Query 016366
Match_columns 390
No_of_seqs 178 out of 1971
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 12:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 5E-54 1.7E-58 414.2 30.5 330 21-390 5-345 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 4.6E-53 1.6E-57 409.1 36.5 341 17-390 13-364 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 3.5E-53 1.2E-57 410.7 34.1 357 1-390 1-366 (368)
4 3lst_A CALO1 methyltransferase 100.0 4.3E-48 1.5E-52 372.4 32.4 324 21-390 19-347 (348)
5 3gwz_A MMCR; methyltransferase 100.0 3.2E-48 1.1E-52 376.1 30.3 327 18-390 32-368 (369)
6 1fp1_D Isoliquiritigenin 2'-O- 100.0 1.8E-47 6.3E-52 371.3 30.1 341 19-390 17-372 (372)
7 3i53_A O-methyltransferase; CO 100.0 4.7E-48 1.6E-52 369.8 25.5 316 26-390 7-331 (332)
8 1zg3_A Isoflavanone 4'-O-methy 100.0 2.3E-47 8E-52 368.7 29.6 337 20-390 6-358 (358)
9 1fp2_A Isoflavone O-methyltran 100.0 1.1E-46 3.8E-51 363.1 31.3 336 19-390 11-352 (352)
10 2ip2_A Probable phenazine-spec 100.0 1.4E-46 4.8E-51 359.8 30.1 319 23-390 7-333 (334)
11 3dp7_A SAM-dependent methyltra 100.0 2.2E-44 7.6E-49 348.4 24.8 327 17-390 8-354 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 7.1E-44 2.4E-48 346.2 25.7 325 21-390 13-355 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 1.8E-43 6.1E-48 341.7 26.7 323 23-390 18-355 (360)
14 2r3s_A Uncharacterized protein 100.0 1.5E-42 5.2E-47 331.7 27.9 314 26-389 8-333 (335)
15 1x19_A CRTF-related protein; m 100.0 4.3E-42 1.5E-46 332.0 28.5 313 20-390 26-358 (359)
16 3mcz_A O-methyltransferase; ad 100.0 9.5E-42 3.2E-46 328.6 25.2 316 20-390 20-348 (352)
17 4gek_A TRNA (CMO5U34)-methyltr 99.9 1E-20 3.5E-25 174.0 18.5 171 217-390 62-256 (261)
18 3dtn_A Putative methyltransfer 99.8 2.2E-19 7.6E-24 162.0 18.6 174 216-390 33-225 (234)
19 3dlc_A Putative S-adenosyl-L-m 99.8 1.6E-19 5.4E-24 160.7 9.1 169 215-389 33-213 (219)
20 3dh0_A SAM dependent methyltra 99.8 4.4E-18 1.5E-22 151.8 14.6 154 217-390 28-192 (219)
21 3hnr_A Probable methyltransfer 99.8 1.5E-17 5.2E-22 148.4 17.4 167 217-390 36-211 (220)
22 1vl5_A Unknown conserved prote 99.8 5.5E-18 1.9E-22 155.4 13.6 153 216-379 27-190 (260)
23 3ujc_A Phosphoethanolamine N-m 99.7 1.3E-17 4.6E-22 152.9 14.9 156 215-380 44-207 (266)
24 3ou2_A SAM-dependent methyltra 99.7 1.6E-17 5.5E-22 147.8 14.0 160 216-380 35-206 (218)
25 1ve3_A Hypothetical protein PH 99.7 1.9E-18 6.5E-23 154.9 7.9 161 227-390 38-226 (227)
26 3bus_A REBM, methyltransferase 99.7 2.6E-17 8.9E-22 151.9 15.3 157 215-380 50-217 (273)
27 3dli_A Methyltransferase; PSI- 99.7 4.4E-17 1.5E-21 147.7 16.2 163 203-380 17-185 (240)
28 3pfg_A N-methyltransferase; N, 99.7 9.6E-18 3.3E-22 154.1 11.6 163 226-390 49-248 (263)
29 1kpg_A CFA synthase;, cyclopro 99.7 3.2E-17 1.1E-21 152.5 14.7 162 216-380 54-229 (287)
30 1xxl_A YCGJ protein; structura 99.7 4.7E-17 1.6E-21 147.5 15.2 153 216-379 11-174 (239)
31 2o57_A Putative sarcosine dime 99.7 5.6E-17 1.9E-21 151.6 15.0 155 215-380 67-235 (297)
32 1xtp_A LMAJ004091AAA; SGPP, st 99.7 1.4E-17 4.9E-22 151.8 10.1 149 216-380 83-239 (254)
33 3hem_A Cyclopropane-fatty-acyl 99.7 1.2E-16 4.1E-21 149.9 16.5 163 216-381 62-245 (302)
34 1nkv_A Hypothetical protein YJ 99.7 6E-17 2E-21 147.9 14.0 153 215-379 25-187 (256)
35 3ege_A Putative methyltransfer 99.7 2.1E-16 7E-21 145.2 16.7 153 215-380 23-179 (261)
36 3bxo_A N,N-dimethyltransferase 99.7 5.1E-17 1.8E-21 146.6 12.1 163 226-390 39-238 (239)
37 3f4k_A Putative methyltransfer 99.7 1.3E-16 4.3E-21 145.8 14.6 152 216-380 35-197 (257)
38 3vc1_A Geranyl diphosphate 2-C 99.7 1.3E-16 4.4E-21 150.5 15.0 163 207-380 97-270 (312)
39 3kkz_A Uncharacterized protein 99.7 1.1E-16 3.6E-21 147.5 14.0 151 217-380 36-197 (267)
40 2p7i_A Hypothetical protein; p 99.7 7.6E-17 2.6E-21 146.1 12.8 153 218-379 33-199 (250)
41 2fk8_A Methoxy mycolic acid sy 99.7 2E-16 6.7E-21 149.5 16.0 163 215-380 79-255 (318)
42 3mgg_A Methyltransferase; NYSG 99.7 5.4E-17 1.8E-21 150.1 11.2 150 225-379 35-198 (276)
43 3h2b_A SAM-dependent methyltra 99.7 4.5E-17 1.5E-21 143.5 9.6 138 228-381 42-184 (203)
44 3ocj_A Putative exported prote 99.7 1.2E-16 4.1E-21 150.2 12.7 166 225-390 116-303 (305)
45 3l8d_A Methyltransferase; stru 99.7 5.2E-16 1.8E-20 140.3 16.2 142 226-379 52-200 (242)
46 3i9f_A Putative type 11 methyl 99.7 8.4E-17 2.9E-21 137.7 10.4 146 218-389 9-158 (170)
47 2ex4_A Adrenal gland protein A 99.7 5.7E-17 2E-21 147.0 9.5 138 227-380 79-226 (241)
48 2qe6_A Uncharacterized protein 99.7 5.6E-16 1.9E-20 143.4 16.2 151 216-375 66-238 (274)
49 3gu3_A Methyltransferase; alph 99.7 2.1E-16 7.2E-21 147.0 13.2 161 216-379 11-190 (284)
50 1pjz_A Thiopurine S-methyltran 99.7 1E-16 3.4E-21 141.7 10.5 142 217-380 13-177 (203)
51 3g2m_A PCZA361.24; SAM-depende 99.7 1.7E-16 6E-21 148.6 12.7 175 202-380 58-275 (299)
52 3jwg_A HEN1, methyltransferase 99.7 3.3E-16 1.1E-20 139.7 13.8 151 217-376 20-189 (219)
53 3jwh_A HEN1; methyltransferase 99.7 3.4E-16 1.2E-20 139.5 13.2 150 217-375 20-188 (217)
54 4fsd_A Arsenic methyltransfera 99.7 3.3E-16 1.1E-20 152.0 14.1 144 226-378 82-250 (383)
55 3e23_A Uncharacterized protein 99.7 2.1E-16 7.1E-21 140.2 10.8 139 225-380 41-183 (211)
56 3bkx_A SAM-dependent methyltra 99.7 6.9E-16 2.4E-20 142.4 14.6 162 216-380 33-220 (275)
57 3bkw_A MLL3908 protein, S-aden 99.7 3.1E-16 1.1E-20 141.8 11.1 159 217-379 34-214 (243)
58 2p35_A Trans-aconitate 2-methy 99.7 2.7E-16 9.4E-21 143.7 10.8 152 216-374 23-185 (259)
59 3lcc_A Putative methyl chlorid 99.7 4.7E-16 1.6E-20 140.3 11.9 132 228-380 67-208 (235)
60 3ccf_A Cyclopropane-fatty-acyl 99.7 1.1E-15 3.8E-20 141.6 14.6 157 217-380 48-211 (279)
61 2yqz_A Hypothetical protein TT 99.7 1E-15 3.4E-20 140.2 13.9 147 225-378 37-195 (263)
62 4htf_A S-adenosylmethionine-de 99.6 6.5E-16 2.2E-20 143.5 12.0 155 217-380 60-233 (285)
63 1vlm_A SAM-dependent methyltra 99.6 2.6E-15 9E-20 134.0 15.3 137 228-379 48-188 (219)
64 3g5l_A Putative S-adenosylmeth 99.6 5.5E-16 1.9E-20 141.4 11.0 159 217-379 35-216 (253)
65 3sm3_A SAM-dependent methyltra 99.6 1.9E-15 6.4E-20 135.8 14.2 149 226-379 29-207 (235)
66 1y8c_A S-adenosylmethionine-de 99.6 1.7E-15 5.7E-20 137.1 13.5 162 227-390 37-244 (246)
67 2qm3_A Predicted methyltransfe 99.6 5.7E-15 1.9E-19 142.7 17.9 219 48-326 47-279 (373)
68 3cgg_A SAM-dependent methyltra 99.6 2.1E-15 7E-20 131.3 13.1 132 217-379 38-175 (195)
69 3g07_A 7SK snRNA methylphospha 99.6 3.7E-16 1.3E-20 146.0 7.6 146 226-379 45-269 (292)
70 3e8s_A Putative SAM dependent 99.6 1E-15 3.5E-20 136.6 9.9 153 217-378 43-208 (227)
71 3d2l_A SAM-dependent methyltra 99.6 3.3E-15 1.1E-19 135.0 13.3 169 216-390 25-242 (243)
72 3ggd_A SAM-dependent methyltra 99.6 1.6E-15 5.6E-20 137.5 9.6 148 225-379 54-219 (245)
73 4hg2_A Methyltransferase type 99.6 2.7E-15 9.3E-20 137.3 10.9 97 227-328 39-139 (257)
74 2zfu_A Nucleomethylin, cerebra 99.6 6.3E-15 2.2E-19 130.9 13.0 133 215-390 55-190 (215)
75 2xvm_A Tellurite resistance pr 99.6 5.4E-15 1.9E-19 129.3 12.3 142 217-379 23-173 (199)
76 3cc8_A Putative methyltransfer 99.6 2.1E-15 7.3E-20 134.9 8.8 152 216-380 23-186 (230)
77 2aot_A HMT, histamine N-methyl 99.6 4.5E-15 1.5E-19 138.5 11.1 140 226-376 51-218 (292)
78 2p8j_A S-adenosylmethionine-de 99.6 1.7E-15 6E-20 133.7 6.7 152 225-377 21-181 (209)
79 3g5t_A Trans-aconitate 3-methy 99.6 1.7E-14 5.6E-19 135.1 12.0 160 202-372 13-197 (299)
80 2gb4_A Thiopurine S-methyltran 99.6 2E-14 6.9E-19 131.2 12.2 133 226-379 67-227 (252)
81 3thr_A Glycine N-methyltransfe 99.5 3.1E-15 1.1E-19 139.4 4.9 108 215-325 46-176 (293)
82 3giw_A Protein of unknown func 99.5 1.7E-13 5.7E-18 125.2 15.2 151 217-375 68-243 (277)
83 4e2x_A TCAB9; kijanose, tetron 99.5 2.9E-14 9.9E-19 139.7 10.7 152 213-380 94-254 (416)
84 2i62_A Nicotinamide N-methyltr 99.5 2E-14 6.8E-19 131.6 8.8 140 226-380 55-240 (265)
85 1ri5_A MRNA capping enzyme; me 99.5 5.2E-14 1.8E-18 131.1 11.7 154 226-380 63-251 (298)
86 2a14_A Indolethylamine N-methy 99.5 1.1E-14 3.9E-19 133.7 6.7 140 225-379 53-238 (263)
87 3q87_B N6 adenine specific DNA 99.5 2.7E-13 9.2E-18 116.1 14.7 119 226-380 22-150 (170)
88 3mq2_A 16S rRNA methyltransfer 99.5 7.8E-14 2.7E-18 124.2 11.7 143 225-380 25-185 (218)
89 2gs9_A Hypothetical protein TT 99.5 6.6E-14 2.3E-18 123.8 10.6 137 218-370 29-171 (211)
90 2kw5_A SLR1183 protein; struct 99.5 1.1E-13 3.7E-18 121.6 11.5 131 230-379 32-171 (202)
91 1wzn_A SAM-dependent methyltra 99.5 5E-13 1.7E-17 121.5 16.2 105 217-324 32-145 (252)
92 3ofk_A Nodulation protein S; N 99.5 1.3E-14 4.6E-19 128.8 5.4 100 225-326 49-156 (216)
93 3m70_A Tellurite resistance pr 99.5 1.9E-13 6.5E-18 126.9 12.8 141 217-378 111-259 (286)
94 3e05_A Precorrin-6Y C5,15-meth 99.5 4.8E-13 1.6E-17 117.8 14.7 121 216-371 30-160 (204)
95 2g72_A Phenylethanolamine N-me 99.5 2.4E-14 8.3E-19 133.2 6.6 150 216-380 59-257 (289)
96 1fbn_A MJ fibrillarin homologu 99.5 5.5E-13 1.9E-17 119.9 14.5 141 225-390 72-227 (230)
97 3orh_A Guanidinoacetate N-meth 99.5 1.7E-14 5.7E-19 130.5 4.5 134 226-377 59-208 (236)
98 3p2e_A 16S rRNA methylase; met 99.5 2.6E-13 9.1E-18 121.7 11.1 145 226-380 23-186 (225)
99 3grz_A L11 mtase, ribosomal pr 99.5 1.8E-13 6E-18 120.7 9.5 129 226-389 59-195 (205)
100 1dus_A MJ0882; hypothetical pr 99.4 7.9E-13 2.7E-17 114.7 13.2 141 216-390 42-193 (194)
101 2b3t_A Protein methyltransfera 99.4 1E-12 3.6E-17 121.4 14.6 143 216-390 100-275 (276)
102 3uwp_A Histone-lysine N-methyl 99.4 3.2E-13 1.1E-17 129.3 11.1 113 215-331 162-295 (438)
103 3hm2_A Precorrin-6Y C5,15-meth 99.4 5.6E-13 1.9E-17 114.3 10.3 102 217-326 16-129 (178)
104 3htx_A HEN1; HEN1, small RNA m 99.4 1.9E-12 6.4E-17 132.8 15.0 108 217-326 712-836 (950)
105 4dzr_A Protein-(glutamine-N5) 99.4 1E-13 3.4E-18 122.5 4.9 145 216-389 19-203 (215)
106 1zx0_A Guanidinoacetate N-meth 99.4 2.2E-13 7.4E-18 123.0 6.3 100 226-326 59-172 (236)
107 2vdw_A Vaccinia virus capping 99.4 8.3E-13 2.8E-17 123.7 9.4 151 227-379 48-246 (302)
108 1yzh_A TRNA (guanine-N(7)-)-me 99.4 3.4E-12 1.2E-16 113.3 12.1 98 227-324 41-156 (214)
109 1af7_A Chemotaxis receptor met 99.4 7.7E-13 2.6E-17 121.8 7.8 96 227-322 105-250 (274)
110 1yb2_A Hypothetical protein TA 99.4 5.2E-13 1.8E-17 123.4 6.3 125 217-378 101-236 (275)
111 3iv6_A Putative Zn-dependent a 99.4 1.5E-12 5.1E-17 118.9 9.2 106 216-325 35-149 (261)
112 3njr_A Precorrin-6Y methylase; 99.4 1E-11 3.5E-16 109.5 14.0 122 217-377 46-178 (204)
113 1nt2_A Fibrillarin-like PRE-rR 99.3 7.8E-12 2.7E-16 110.8 13.1 137 225-390 55-209 (210)
114 3mb5_A SAM-dependent methyltra 99.3 1.5E-12 5.3E-17 118.6 8.8 128 215-379 82-222 (255)
115 2pxx_A Uncharacterized protein 99.3 1.2E-12 4.2E-17 115.6 7.3 101 226-327 41-162 (215)
116 4df3_A Fibrillarin-like rRNA/T 99.3 5.5E-12 1.9E-16 112.9 11.0 133 225-381 75-219 (233)
117 2ipx_A RRNA 2'-O-methyltransfe 99.3 5.1E-12 1.7E-16 113.7 10.3 141 225-389 75-230 (233)
118 1l3i_A Precorrin-6Y methyltran 99.3 4.7E-12 1.6E-16 109.5 9.4 121 217-374 24-155 (192)
119 3m33_A Uncharacterized protein 99.3 2.3E-12 7.8E-17 115.4 7.5 114 226-379 47-167 (226)
120 3evz_A Methyltransferase; NYSG 99.3 1.1E-11 3.7E-16 111.1 11.5 128 225-381 53-208 (230)
121 1g8a_A Fibrillarin-like PRE-rR 99.3 3.2E-11 1.1E-15 107.9 14.0 141 225-390 71-226 (227)
122 3bgv_A MRNA CAP guanine-N7 met 99.3 7E-12 2.4E-16 117.9 10.0 100 226-326 33-157 (313)
123 3mti_A RRNA methylase; SAM-dep 99.3 8.7E-12 3E-16 107.8 9.7 133 225-380 20-170 (185)
124 2nxc_A L11 mtase, ribosomal pr 99.3 4.2E-12 1.4E-16 116.0 7.7 122 226-383 119-248 (254)
125 3bwc_A Spermidine synthase; SA 99.3 6.2E-12 2.1E-16 117.9 9.0 129 226-379 94-240 (304)
126 3fzg_A 16S rRNA methylase; met 99.3 3.8E-12 1.3E-16 109.2 6.8 95 226-324 48-152 (200)
127 2ld4_A Anamorsin; methyltransf 99.3 3.3E-12 1.1E-16 109.7 6.3 114 225-378 10-133 (176)
128 2pwy_A TRNA (adenine-N(1)-)-me 99.3 8.6E-12 2.9E-16 113.6 9.4 127 215-378 85-223 (258)
129 3id6_C Fibrillarin-like rRNA/T 99.3 5.7E-11 2E-15 106.5 14.5 150 216-389 63-229 (232)
130 3eey_A Putative rRNA methylase 99.3 1E-11 3.6E-16 108.4 9.4 102 225-326 20-141 (197)
131 1xdz_A Methyltransferase GIDB; 99.3 4.8E-12 1.7E-16 114.4 7.3 120 226-378 69-201 (240)
132 4dcm_A Ribosomal RNA large sub 99.3 9.4E-12 3.2E-16 119.9 9.6 109 217-326 213-336 (375)
133 2h00_A Methyltransferase 10 do 99.3 5.9E-13 2E-17 121.4 1.0 145 227-380 65-239 (254)
134 2yxd_A Probable cobalt-precorr 99.3 1.5E-11 5.1E-16 105.6 9.7 121 216-376 25-154 (183)
135 3fpf_A Mtnas, putative unchara 99.3 1.3E-11 4.5E-16 113.9 9.7 95 225-324 120-222 (298)
136 3dxy_A TRNA (guanine-N(7)-)-me 99.3 3.8E-12 1.3E-16 113.5 5.5 99 227-325 34-151 (218)
137 2fca_A TRNA (guanine-N(7)-)-me 99.3 1E-11 3.4E-16 110.3 8.2 98 227-324 38-153 (213)
138 2avn_A Ubiquinone/menaquinone 99.2 1.3E-11 4.4E-16 112.9 8.9 97 227-326 54-154 (260)
139 2pjd_A Ribosomal RNA small sub 99.2 6.2E-12 2.1E-16 120.0 6.4 110 216-326 186-305 (343)
140 3hp7_A Hemolysin, putative; st 99.2 4.2E-11 1.4E-15 110.7 11.7 149 216-380 74-233 (291)
141 3kr9_A SAM-dependent methyltra 99.2 5.3E-11 1.8E-15 105.9 11.9 129 226-389 14-156 (225)
142 3lpm_A Putative methyltransfer 99.2 4.2E-11 1.4E-15 109.5 11.5 124 225-379 46-201 (259)
143 2plw_A Ribosomal RNA methyltra 99.2 5.8E-11 2E-15 103.9 11.8 106 215-324 10-154 (201)
144 1ej0_A FTSJ; methyltransferase 99.2 3.3E-11 1.1E-15 102.6 9.9 106 217-326 12-138 (180)
145 1o54_A SAM-dependent O-methylt 99.2 1.4E-11 4.9E-16 113.7 8.3 128 215-379 101-239 (277)
146 3opn_A Putative hemolysin; str 99.2 1.3E-11 4.6E-16 111.0 7.5 149 216-380 26-185 (232)
147 3duw_A OMT, O-methyltransferas 99.2 2.5E-11 8.7E-16 108.1 9.1 99 225-328 56-171 (223)
148 3lec_A NADB-rossmann superfami 99.2 5.5E-11 1.9E-15 106.0 10.9 129 226-389 20-162 (230)
149 1o9g_A RRNA methyltransferase; 99.2 3.3E-11 1.1E-15 109.6 9.3 109 217-326 42-216 (250)
150 3ckk_A TRNA (guanine-N(7)-)-me 99.2 2.9E-11 9.9E-16 109.0 8.8 100 226-325 45-169 (235)
151 1u2z_A Histone-lysine N-methyl 99.2 7.2E-11 2.4E-15 115.1 11.9 112 215-330 231-365 (433)
152 3g89_A Ribosomal RNA small sub 99.2 1.1E-11 3.7E-16 112.9 5.5 121 226-379 79-212 (249)
153 2y1w_A Histone-arginine methyl 99.2 2.3E-11 8E-16 116.2 7.8 105 217-323 41-154 (348)
154 2frn_A Hypothetical protein PH 99.2 5.8E-11 2E-15 109.8 10.3 120 226-375 124-253 (278)
155 3p9n_A Possible methyltransfer 99.2 9.2E-11 3.2E-15 101.8 10.5 100 226-327 43-156 (189)
156 3lbf_A Protein-L-isoaspartate 99.2 4.9E-11 1.7E-15 105.2 8.3 100 216-326 67-176 (210)
157 1jsx_A Glucose-inhibited divis 99.2 3.4E-11 1.2E-15 105.9 7.0 91 227-323 65-164 (207)
158 3b3j_A Histone-arginine methyl 99.2 3.2E-11 1.1E-15 119.8 7.5 106 215-322 147-261 (480)
159 2yxe_A Protein-L-isoaspartate 99.2 6.1E-11 2.1E-15 105.0 8.6 101 216-325 67-178 (215)
160 2fyt_A Protein arginine N-meth 99.2 1.1E-10 3.9E-15 111.0 10.8 103 217-321 55-168 (340)
161 3u81_A Catechol O-methyltransf 99.2 2.5E-11 8.6E-16 108.2 5.7 100 225-327 56-173 (221)
162 3gnl_A Uncharacterized protein 99.1 1.5E-10 5E-15 104.1 10.4 129 226-389 20-162 (244)
163 3ntv_A MW1564 protein; rossman 99.1 4.7E-11 1.6E-15 107.4 6.8 98 225-327 69-179 (232)
164 3tfw_A Putative O-methyltransf 99.1 1.1E-10 3.9E-15 105.9 9.3 98 225-327 61-173 (248)
165 2b25_A Hypothetical protein; s 99.1 7E-11 2.4E-15 112.3 8.2 104 215-326 94-221 (336)
166 2bm8_A Cephalosporin hydroxyla 99.1 1.9E-10 6.6E-15 103.7 10.2 94 227-325 81-188 (236)
167 3r3h_A O-methyltransferase, SA 99.1 5.5E-11 1.9E-15 107.7 6.6 99 226-329 59-175 (242)
168 1vbf_A 231AA long hypothetical 99.1 1.1E-10 3.8E-15 104.5 8.0 101 215-326 59-167 (231)
169 3q7e_A Protein arginine N-meth 99.1 8.1E-11 2.8E-15 112.4 7.4 96 226-322 65-171 (349)
170 3sso_A Methyltransferase; macr 99.1 5.2E-11 1.8E-15 113.8 5.9 96 226-327 215-327 (419)
171 2vdv_E TRNA (guanine-N(7)-)-me 99.1 5.9E-11 2E-15 107.7 6.0 94 226-324 48-173 (246)
172 1i9g_A Hypothetical protein RV 99.1 3.4E-10 1.2E-14 104.4 11.1 104 215-326 88-205 (280)
173 2gpy_A O-methyltransferase; st 99.1 7.1E-11 2.4E-15 106.1 6.2 98 225-327 52-163 (233)
174 1jg1_A PIMT;, protein-L-isoasp 99.1 1.2E-10 4.2E-15 104.7 7.8 103 214-326 79-191 (235)
175 3adn_A Spermidine synthase; am 99.1 1.3E-10 4.5E-15 108.1 8.1 99 226-324 82-198 (294)
176 1p91_A Ribosomal RNA large sub 99.1 2.1E-10 7E-15 105.2 9.3 93 226-327 84-181 (269)
177 1dl5_A Protein-L-isoaspartate 99.1 1.4E-10 4.9E-15 109.3 8.1 102 216-326 65-177 (317)
178 2ozv_A Hypothetical protein AT 99.1 1.5E-10 5.1E-15 106.0 7.8 100 225-324 34-170 (260)
179 3lcv_B Sisomicin-gentamicin re 99.1 1.7E-10 5.8E-15 103.6 7.7 131 226-376 131-269 (281)
180 1nv8_A HEMK protein; class I a 99.1 3.1E-10 1.1E-14 105.2 9.7 103 217-322 114-247 (284)
181 3tr6_A O-methyltransferase; ce 99.1 5.5E-11 1.9E-15 106.1 4.2 98 226-328 63-178 (225)
182 3dmg_A Probable ribosomal RNA 99.1 4.2E-10 1.4E-14 108.5 10.7 98 227-326 233-342 (381)
183 3gjy_A Spermidine synthase; AP 99.1 1.1E-10 3.9E-15 108.9 6.5 98 228-325 90-201 (317)
184 3r0q_C Probable protein argini 99.1 1.6E-10 5.6E-15 111.4 7.7 101 225-326 61-171 (376)
185 3bzb_A Uncharacterized protein 99.1 8.4E-10 2.9E-14 102.1 12.1 96 225-323 77-204 (281)
186 2nyu_A Putative ribosomal RNA 99.1 4.5E-10 1.5E-14 97.7 9.3 105 217-325 12-146 (196)
187 2hnk_A SAM-dependent O-methylt 99.1 6.8E-10 2.3E-14 100.1 10.5 98 225-327 58-184 (239)
188 2fhp_A Methylase, putative; al 99.0 1.4E-10 4.9E-15 100.0 5.4 107 217-327 34-157 (187)
189 2esr_A Methyltransferase; stru 99.0 7.1E-11 2.4E-15 101.2 3.3 108 217-328 21-142 (177)
190 1g6q_1 HnRNP arginine N-methyl 99.0 3.4E-10 1.2E-14 107.1 8.3 96 226-322 37-143 (328)
191 3dou_A Ribosomal RNA large sub 99.0 4.8E-10 1.7E-14 97.7 8.3 106 214-325 12-140 (191)
192 3c3p_A Methyltransferase; NP_9 99.0 1.9E-10 6.4E-15 101.6 5.5 98 226-328 55-164 (210)
193 2yvl_A TRMI protein, hypotheti 99.0 1.9E-09 6.7E-14 97.3 11.8 102 215-326 80-192 (248)
194 1ws6_A Methyltransferase; stru 99.0 1.8E-10 6.2E-15 97.7 4.6 96 227-328 41-151 (171)
195 3tma_A Methyltransferase; thum 99.0 8.7E-10 3E-14 105.4 9.6 112 213-325 190-318 (354)
196 2ift_A Putative methylase HI07 99.0 1.7E-10 5.7E-15 101.4 4.1 97 227-327 53-166 (201)
197 3gdh_A Trimethylguanosine synt 99.0 2.3E-11 8E-16 109.7 -1.5 137 226-383 77-223 (241)
198 1sui_A Caffeoyl-COA O-methyltr 99.0 3.3E-10 1.1E-14 102.9 5.8 98 225-327 77-193 (247)
199 2oxt_A Nucleoside-2'-O-methylt 99.0 1.3E-09 4.6E-14 99.8 9.9 105 216-326 64-187 (265)
200 3dr5_A Putative O-methyltransf 99.0 3.5E-10 1.2E-14 100.9 5.8 95 228-327 57-166 (221)
201 1r18_A Protein-L-isoaspartate( 99.0 5.9E-10 2E-14 99.6 7.0 101 217-325 73-195 (227)
202 1ixk_A Methyltransferase; open 99.0 9.4E-10 3.2E-14 103.5 8.6 103 225-327 116-249 (315)
203 2fpo_A Methylase YHHF; structu 99.0 7.2E-10 2.5E-14 97.4 6.8 96 227-326 54-162 (202)
204 2p41_A Type II methyltransfera 99.0 1.7E-09 5.8E-14 101.1 9.7 96 225-323 80-190 (305)
205 2wa2_A Non-structural protein 98.9 1.5E-09 5.3E-14 99.9 8.8 105 216-326 72-195 (276)
206 2pbf_A Protein-L-isoaspartate 98.9 1.2E-09 4.2E-14 97.4 7.6 94 225-326 78-195 (227)
207 2avd_A Catechol-O-methyltransf 98.9 5.1E-10 1.8E-14 100.0 5.0 98 225-327 67-182 (229)
208 2i7c_A Spermidine synthase; tr 98.9 3.8E-10 1.3E-14 104.6 4.2 99 226-324 77-192 (283)
209 1iy9_A Spermidine synthase; ro 98.9 5.2E-10 1.8E-14 103.2 5.1 97 227-323 75-188 (275)
210 2o07_A Spermidine synthase; st 98.9 5.5E-10 1.9E-14 104.5 5.1 99 226-324 94-209 (304)
211 1xj5_A Spermidine synthase 1; 98.9 6E-10 2.1E-14 105.5 5.4 98 226-323 119-234 (334)
212 1i1n_A Protein-L-isoaspartate 98.9 2.5E-09 8.6E-14 95.3 9.0 94 225-326 75-184 (226)
213 1uir_A Polyamine aminopropyltr 98.9 5.8E-10 2E-14 104.9 5.0 99 226-324 76-195 (314)
214 1mjf_A Spermidine synthase; sp 98.9 7.1E-10 2.4E-14 102.6 5.2 98 226-324 74-193 (281)
215 3c3y_A Pfomt, O-methyltransfer 98.9 7.6E-10 2.6E-14 99.8 5.3 97 225-326 68-183 (237)
216 1zq9_A Probable dimethyladenos 98.9 9.3E-10 3.2E-14 102.0 6.0 104 214-321 16-144 (285)
217 1ne2_A Hypothetical protein TA 98.9 2.9E-09 1E-13 93.0 8.6 88 225-314 49-139 (200)
218 3cbg_A O-methyltransferase; cy 98.9 6.2E-10 2.1E-14 100.0 4.3 98 226-328 71-186 (232)
219 2b2c_A Spermidine synthase; be 98.9 6.3E-10 2.1E-14 104.5 4.4 99 226-324 107-222 (314)
220 2pt6_A Spermidine synthase; tr 98.9 7.4E-10 2.5E-14 104.4 4.7 99 226-324 115-230 (321)
221 3frh_A 16S rRNA methylase; met 98.9 2.7E-09 9.2E-14 94.9 7.2 95 226-324 104-206 (253)
222 3a27_A TYW2, uncharacterized p 98.9 1.1E-09 3.9E-14 100.8 4.9 97 225-327 117-222 (272)
223 2cmg_A Spermidine synthase; tr 98.9 3.3E-09 1.1E-13 97.0 7.6 89 226-323 71-170 (262)
224 1inl_A Spermidine synthase; be 98.9 1.5E-09 5.1E-14 101.2 5.2 97 227-323 90-204 (296)
225 3tm4_A TRNA (guanine N2-)-meth 98.8 1E-08 3.6E-13 98.6 10.8 122 225-380 215-353 (373)
226 4hc4_A Protein arginine N-meth 98.8 4.2E-09 1.4E-13 100.9 6.9 95 227-322 83-187 (376)
227 1wy7_A Hypothetical protein PH 98.8 2.9E-08 9.8E-13 87.0 11.2 87 226-314 48-141 (207)
228 3ajd_A Putative methyltransfer 98.8 4.9E-09 1.7E-13 96.6 6.0 104 225-328 81-215 (274)
229 4azs_A Methyltransferase WBDD; 98.8 1.3E-09 4.5E-14 110.8 2.3 102 226-329 65-178 (569)
230 2yxl_A PH0851 protein, 450AA l 98.8 1.4E-08 4.8E-13 100.2 9.4 108 220-328 253-393 (450)
231 2xyq_A Putative 2'-O-methyl tr 98.8 1.4E-08 4.8E-13 93.9 8.3 116 225-377 61-195 (290)
232 2f8l_A Hypothetical protein LM 98.8 1.1E-08 3.7E-13 97.4 7.8 100 226-325 129-257 (344)
233 2ih2_A Modification methylase 98.8 2.2E-08 7.4E-13 97.8 10.0 106 216-325 29-165 (421)
234 1qam_A ERMC' methyltransferase 98.8 1.2E-08 4.2E-13 92.3 7.4 104 214-320 18-142 (244)
235 3b5i_A S-adenosyl-L-methionine 98.7 1.9E-07 6.5E-12 89.2 15.5 152 228-379 53-298 (374)
236 2h1r_A Dimethyladenosine trans 98.7 1.9E-08 6.5E-13 93.8 8.4 101 214-318 30-153 (299)
237 3k6r_A Putative transferase PH 98.7 1.8E-08 6.2E-13 92.5 7.4 120 225-374 123-252 (278)
238 1yub_A Ermam, rRNA methyltrans 98.7 3.5E-09 1.2E-13 95.9 2.6 106 216-324 19-145 (245)
239 2efj_A 3,7-dimethylxanthine me 98.7 2.5E-07 8.5E-12 88.5 13.6 151 228-378 53-291 (384)
240 2igt_A SAM dependent methyltra 98.7 5.1E-08 1.7E-12 92.2 8.7 96 227-326 153-274 (332)
241 1sqg_A SUN protein, FMU protei 98.6 5E-08 1.7E-12 95.7 8.3 108 219-327 239-377 (429)
242 1m6e_X S-adenosyl-L-methionnin 98.6 5.8E-07 2E-11 85.3 15.1 152 226-377 50-278 (359)
243 2frx_A Hypothetical protein YE 98.6 1.2E-07 4.1E-12 94.0 9.9 101 227-327 117-249 (479)
244 3m6w_A RRNA methylase; rRNA me 98.6 3.7E-08 1.3E-12 96.8 5.9 102 225-327 99-232 (464)
245 1rjd_A PPM1P, carboxy methyl t 98.6 4.7E-07 1.6E-11 85.5 12.9 146 226-372 96-281 (334)
246 3k0b_A Predicted N6-adenine-sp 98.5 2.2E-07 7.4E-12 89.8 8.4 112 213-325 188-351 (393)
247 3ldg_A Putative uncharacterize 98.5 5.8E-07 2E-11 86.5 10.7 114 211-325 179-344 (384)
248 1wxx_A TT1595, hypothetical pr 98.4 1.3E-07 4.3E-12 91.3 5.2 98 227-326 209-327 (382)
249 3ftd_A Dimethyladenosine trans 98.4 5.7E-07 2E-11 81.4 9.1 86 214-301 19-110 (249)
250 3gru_A Dimethyladenosine trans 98.4 5.5E-07 1.9E-11 83.4 8.8 80 214-296 38-125 (295)
251 2as0_A Hypothetical protein PH 98.4 9.5E-08 3.2E-12 92.7 3.7 99 227-326 217-337 (396)
252 2okc_A Type I restriction enzy 98.4 1.6E-07 5.6E-12 92.4 5.5 110 215-325 160-308 (445)
253 2yx1_A Hypothetical protein MJ 98.4 2.1E-07 7.4E-12 88.1 5.7 93 226-327 194-294 (336)
254 3m4x_A NOL1/NOP2/SUN family pr 98.4 1.9E-07 6.6E-12 91.6 4.8 103 225-327 103-237 (456)
255 3ldu_A Putative methylase; str 98.4 6.3E-07 2.1E-11 86.4 8.2 112 213-325 182-345 (385)
256 3c0k_A UPF0064 protein YCCW; P 98.4 1.9E-07 6.3E-12 90.6 4.0 99 226-325 219-340 (396)
257 2b78_A Hypothetical protein SM 98.4 1.1E-07 3.6E-12 91.9 2.2 99 226-325 211-332 (385)
258 4dmg_A Putative uncharacterize 98.3 5.2E-07 1.8E-11 87.2 6.6 98 227-326 214-328 (393)
259 3fut_A Dimethyladenosine trans 98.3 1E-06 3.5E-11 80.6 8.0 90 215-309 36-133 (271)
260 1uwv_A 23S rRNA (uracil-5-)-me 98.3 1.5E-06 5.1E-11 85.2 9.6 99 216-323 276-388 (433)
261 2jjq_A Uncharacterized RNA met 98.3 2.8E-06 9.5E-11 82.9 11.5 91 226-324 289-387 (425)
262 2qfm_A Spermine synthase; sper 98.3 3E-07 1E-11 86.9 3.8 98 226-324 187-314 (364)
263 3o4f_A Spermidine synthase; am 98.3 8.6E-07 2.9E-11 81.6 6.6 100 226-325 82-199 (294)
264 3evf_A RNA-directed RNA polyme 98.3 3.5E-06 1.2E-10 76.1 10.0 109 213-322 61-182 (277)
265 3uzu_A Ribosomal RNA small sub 98.3 4.4E-07 1.5E-11 83.5 4.0 68 216-284 32-105 (279)
266 3v97_A Ribosomal RNA large sub 98.2 6.4E-07 2.2E-11 92.9 5.0 99 227-326 539-659 (703)
267 3tqs_A Ribosomal RNA small sub 98.2 1.5E-06 5.2E-11 78.9 6.8 68 214-284 17-90 (255)
268 1qyr_A KSGA, high level kasuga 98.2 1.1E-06 3.8E-11 79.6 5.9 91 214-307 9-111 (252)
269 4gqb_A Protein arginine N-meth 98.2 1.1E-06 3.9E-11 89.0 6.5 126 189-321 323-464 (637)
270 3iei_A Leucine carboxyl methyl 98.1 8.3E-05 2.9E-09 69.8 16.4 145 227-379 90-281 (334)
271 2qy6_A UPF0209 protein YFCK; s 98.1 2.2E-06 7.5E-11 77.8 4.6 121 227-380 60-236 (257)
272 3ua3_A Protein arginine N-meth 98.0 5.9E-06 2E-10 83.8 7.3 126 189-321 378-531 (745)
273 1m6y_A S-adenosyl-methyltransf 98.0 5.7E-06 1.9E-10 76.9 5.3 77 216-293 16-106 (301)
274 3v97_A Ribosomal RNA large sub 97.9 1.9E-05 6.4E-10 81.9 9.0 112 213-325 177-348 (703)
275 2b9e_A NOL1/NOP2/SUN domain fa 97.9 2.2E-05 7.4E-10 73.3 8.4 101 225-326 100-236 (309)
276 3gcz_A Polyprotein; flavivirus 97.9 1.3E-05 4.6E-10 72.4 6.7 111 213-325 77-202 (282)
277 2dul_A N(2),N(2)-dimethylguano 97.9 1E-05 3.4E-10 77.7 5.5 92 227-324 47-164 (378)
278 3bt7_A TRNA (uracil-5-)-methyl 97.9 4.3E-06 1.5E-10 80.1 2.8 87 228-324 214-326 (369)
279 2r6z_A UPF0341 protein in RSP 97.9 2E-05 6.7E-10 71.6 6.9 99 225-327 81-219 (258)
280 2uyo_A Hypothetical protein ML 97.7 0.00028 9.6E-09 65.6 12.1 144 227-374 102-274 (310)
281 2ar0_A M.ecoki, type I restric 97.7 3.8E-05 1.3E-09 77.2 6.2 109 216-325 159-313 (541)
282 3axs_A Probable N(2),N(2)-dime 97.7 1.9E-05 6.4E-10 76.0 3.7 93 226-324 51-158 (392)
283 2k4m_A TR8_protein, UPF0146 pr 97.7 0.00018 6.2E-09 58.5 8.8 83 226-325 34-122 (153)
284 4auk_A Ribosomal RNA large sub 97.6 0.00027 9.1E-09 66.8 10.3 96 225-325 209-307 (375)
285 3eld_A Methyltransferase; flav 97.6 0.00043 1.5E-08 63.0 10.6 110 213-324 68-191 (300)
286 3c6k_A Spermine synthase; sper 97.5 4.3E-05 1.5E-09 72.5 3.6 96 227-323 205-330 (381)
287 3lkz_A Non-structural protein 97.4 0.0011 3.7E-08 60.1 10.8 108 213-322 81-202 (321)
288 3p8z_A Mtase, non-structural p 97.4 0.00093 3.2E-08 58.6 10.0 107 213-322 65-184 (267)
289 3lkd_A Type I restriction-modi 97.4 0.0006 2.1E-08 68.3 10.1 98 227-325 221-359 (542)
290 3khk_A Type I restriction-modi 97.4 0.00011 3.6E-09 73.9 4.4 110 214-325 233-396 (544)
291 2px2_A Genome polyprotein [con 97.4 0.00085 2.9E-08 59.7 9.6 111 213-326 60-185 (269)
292 3s1s_A Restriction endonucleas 97.4 0.00043 1.5E-08 71.5 8.8 100 226-325 320-466 (878)
293 2vz8_A Fatty acid synthase; tr 97.3 9.1E-05 3.1E-09 86.6 2.7 141 227-377 1240-1393(2512)
294 2zwa_A Leucine carboxyl methyl 97.2 0.0052 1.8E-07 63.7 15.0 147 227-379 107-309 (695)
295 2oyr_A UPF0341 protein YHIQ; a 97.2 0.00038 1.3E-08 63.0 5.5 77 218-297 78-176 (258)
296 3ll7_A Putative methyltransfer 97.1 0.0002 6.9E-09 69.0 3.0 64 227-292 93-170 (410)
297 3cvo_A Methyltransferase-like 97.1 0.002 6.8E-08 55.9 8.8 90 226-326 29-155 (202)
298 1xmk_A Double-stranded RNA-spe 97.1 0.00038 1.3E-08 50.6 3.5 61 45-110 12-73 (79)
299 3b73_A PHIH1 repressor-like pr 97.0 0.00028 9.7E-09 55.0 2.9 65 45-116 14-80 (111)
300 2wk1_A NOVP; transferase, O-me 97.0 0.0022 7.6E-08 58.6 8.9 95 226-324 105-244 (282)
301 1wg8_A Predicted S-adenosylmet 97.0 0.00072 2.5E-08 61.4 5.4 64 215-281 11-77 (285)
302 3pqk_A Biofilm growth-associat 96.7 0.0018 6.3E-08 49.4 5.2 59 44-107 23-81 (102)
303 2heo_A Z-DNA binding protein 1 96.7 0.00071 2.4E-08 47.6 2.5 54 46-106 12-66 (67)
304 1y0u_A Arsenical resistance op 96.7 0.0012 4.1E-08 49.9 3.9 61 40-110 27-87 (96)
305 3cuo_A Uncharacterized HTH-typ 96.6 0.0013 4.4E-08 49.8 3.2 60 44-107 24-83 (99)
306 1u2w_A CADC repressor, cadmium 96.6 0.0017 5.8E-08 51.5 4.0 64 40-107 38-101 (122)
307 3jth_A Transcription activator 96.5 0.0013 4.3E-08 49.9 3.0 60 43-107 22-81 (98)
308 1qgp_A Protein (double strande 96.5 0.0015 5.2E-08 47.3 2.8 58 45-107 15-75 (77)
309 3ech_A MEXR, multidrug resista 96.5 0.0059 2E-07 49.3 6.7 67 43-113 36-105 (142)
310 2htj_A P fimbrial regulatory p 96.4 0.0027 9.3E-08 46.3 4.1 44 47-94 3-46 (81)
311 1qbj_A Protein (double-strande 96.4 0.0028 9.6E-08 46.3 4.0 63 45-112 11-76 (81)
312 1ub9_A Hypothetical protein PH 96.4 0.0014 4.9E-08 49.5 2.3 68 39-110 11-81 (100)
313 3f6o_A Probable transcriptiona 96.3 0.0018 6.3E-08 51.0 2.5 65 39-108 13-77 (118)
314 2hzt_A Putative HTH-type trans 96.1 0.0054 1.8E-07 47.3 4.4 75 25-113 4-82 (107)
315 1tbx_A ORF F-93, hypothetical 96.1 0.0022 7.7E-08 48.6 2.1 64 46-113 10-77 (99)
316 2oqg_A Possible transcriptiona 96.1 0.0027 9.3E-08 49.3 2.6 60 45-109 22-81 (114)
317 3tka_A Ribosomal RNA small sub 96.1 0.01 3.5E-07 55.1 6.8 67 214-281 45-115 (347)
318 1r1u_A CZRA, repressor protein 96.0 0.0038 1.3E-07 48.0 3.1 46 45-95 27-72 (106)
319 2jsc_A Transcriptional regulat 96.0 0.0038 1.3E-07 49.2 3.1 63 40-107 17-79 (118)
320 3k0l_A Repressor protein; heli 96.0 0.0064 2.2E-07 50.4 4.8 66 44-113 46-114 (162)
321 2kko_A Possible transcriptiona 96.0 0.01 3.4E-07 45.8 5.4 73 21-107 11-83 (108)
322 4fzv_A Putative methyltransfer 96.0 0.0071 2.4E-07 57.2 5.4 103 225-327 146-287 (359)
323 3g3z_A NMB1585, transcriptiona 96.0 0.0058 2E-07 49.5 4.2 66 44-113 31-99 (145)
324 3kp7_A Transcriptional regulat 95.9 0.026 8.9E-07 45.9 8.2 63 46-113 40-107 (151)
325 1xn7_A Hypothetical protein YH 95.9 0.0052 1.8E-07 44.5 3.3 42 49-94 7-48 (78)
326 2k02_A Ferrous iron transport 95.8 0.0053 1.8E-07 45.4 2.9 43 49-95 7-49 (87)
327 3nrv_A Putative transcriptiona 95.8 0.0068 2.3E-07 49.2 4.0 66 44-113 40-108 (148)
328 3vyw_A MNMC2; tRNA wobble urid 95.8 0.025 8.7E-07 52.0 8.1 123 226-381 95-250 (308)
329 3mq0_A Transcriptional repress 95.8 0.0064 2.2E-07 55.4 4.1 57 47-110 33-90 (275)
330 2qww_A Transcriptional regulat 95.8 0.028 9.5E-07 45.8 7.7 65 45-113 42-111 (154)
331 1i4w_A Mitochondrial replicati 95.7 0.017 5.6E-07 54.5 6.9 67 214-281 40-116 (353)
332 3f6v_A Possible transcriptiona 95.7 0.0042 1.4E-07 51.2 2.4 68 37-109 51-118 (151)
333 3df8_A Possible HXLR family tr 95.7 0.005 1.7E-07 47.9 2.7 75 24-113 16-93 (111)
334 1r1t_A Transcriptional repress 95.7 0.0068 2.3E-07 48.0 3.4 58 45-107 47-104 (122)
335 3bja_A Transcriptional regulat 95.7 0.0078 2.7E-07 48.2 3.8 66 44-113 33-101 (139)
336 3bdd_A Regulatory protein MARR 95.6 0.014 4.9E-07 46.8 5.3 65 45-113 32-99 (142)
337 4a5n_A Uncharacterized HTH-typ 95.6 0.013 4.3E-07 47.1 4.7 79 21-113 12-94 (131)
338 3oop_A LIN2960 protein; protei 95.5 0.0046 1.6E-07 50.0 1.9 66 44-113 37-105 (143)
339 2nyx_A Probable transcriptiona 95.5 0.029 9.9E-07 46.7 7.0 66 44-113 45-113 (168)
340 2fsw_A PG_0823 protein; alpha- 95.5 0.013 4.5E-07 45.1 4.5 78 22-113 12-93 (107)
341 1on2_A Transcriptional regulat 95.5 0.0079 2.7E-07 48.7 3.2 54 53-113 17-70 (142)
342 2xrn_A HTH-type transcriptiona 95.5 0.0071 2.4E-07 54.0 3.1 61 47-113 9-70 (241)
343 2wte_A CSA3; antiviral protein 95.5 0.0073 2.5E-07 54.0 3.1 64 45-114 153-216 (244)
344 1jgs_A Multiple antibiotic res 95.4 0.008 2.7E-07 48.1 3.1 65 45-113 35-102 (138)
345 1z7u_A Hypothetical protein EF 95.4 0.0078 2.7E-07 46.8 2.9 78 22-113 9-90 (112)
346 3bpv_A Transcriptional regulat 95.4 0.0083 2.8E-07 48.0 3.0 65 45-113 30-97 (138)
347 3hsr_A HTH-type transcriptiona 95.4 0.0042 1.4E-07 50.1 1.2 65 45-113 37-104 (140)
348 3r24_A NSP16, 2'-O-methyl tran 95.4 0.014 4.9E-07 52.8 4.6 91 226-323 108-216 (344)
349 2nnn_A Probable transcriptiona 95.3 0.0075 2.6E-07 48.3 2.5 66 44-113 38-106 (140)
350 1s3j_A YUSO protein; structura 95.3 0.037 1.3E-06 45.1 6.8 64 46-113 39-105 (155)
351 1oyi_A Double-stranded RNA-bin 95.3 0.0097 3.3E-07 43.3 2.7 59 44-108 17-75 (82)
352 2jt1_A PEFI protein; solution 95.3 0.0099 3.4E-07 42.9 2.7 43 49-95 9-57 (77)
353 2zkz_A Transcriptional repress 95.3 0.0082 2.8E-07 45.6 2.4 60 43-107 26-85 (99)
354 2rdp_A Putative transcriptiona 95.2 0.0094 3.2E-07 48.4 2.9 65 45-113 43-110 (150)
355 2gxg_A 146AA long hypothetical 95.2 0.03 1E-06 45.1 5.9 65 44-113 37-104 (146)
356 2hr3_A Probable transcriptiona 95.2 0.012 4.2E-07 47.6 3.6 67 43-113 34-104 (147)
357 3tgn_A ADC operon repressor AD 95.2 0.012 4E-07 47.6 3.4 65 44-113 38-105 (146)
358 3f3x_A Transcriptional regulat 95.2 0.023 8E-07 45.7 5.3 65 44-113 37-104 (144)
359 1mkm_A ICLR transcriptional re 95.2 0.013 4.5E-07 52.4 4.1 56 47-109 11-67 (249)
360 4hbl_A Transcriptional regulat 95.2 0.0062 2.1E-07 49.7 1.7 66 44-113 41-109 (149)
361 2fbh_A Transcriptional regulat 95.2 0.013 4.5E-07 47.2 3.6 65 45-113 38-106 (146)
362 2bv6_A MGRA, HTH-type transcri 95.2 0.013 4.3E-07 47.2 3.4 66 44-113 37-105 (142)
363 3eco_A MEPR; mutlidrug efflux 95.2 0.0093 3.2E-07 47.8 2.6 65 45-113 32-101 (139)
364 3cdh_A Transcriptional regulat 95.1 0.0096 3.3E-07 48.8 2.7 65 45-113 44-111 (155)
365 1lj9_A Transcriptional regulat 95.1 0.01 3.6E-07 47.8 2.8 64 46-113 31-97 (144)
366 3s2w_A Transcriptional regulat 95.1 0.0081 2.8E-07 49.5 2.1 63 47-113 53-118 (159)
367 3bj6_A Transcriptional regulat 95.1 0.011 3.7E-07 48.2 2.8 65 45-113 41-108 (152)
368 2a61_A Transcriptional regulat 95.1 0.0099 3.4E-07 48.0 2.6 66 44-113 33-101 (145)
369 2fu4_A Ferric uptake regulatio 95.1 0.013 4.3E-07 42.8 2.9 47 45-95 18-71 (83)
370 1yyv_A Putative transcriptiona 95.1 0.012 4.1E-07 47.2 3.0 78 22-113 22-103 (131)
371 2eth_A Transcriptional regulat 95.1 0.013 4.4E-07 48.0 3.2 66 44-113 44-112 (154)
372 2fa5_A Transcriptional regulat 95.1 0.012 4.1E-07 48.5 3.1 65 45-113 50-117 (162)
373 3jw4_A Transcriptional regulat 95.0 0.01 3.5E-07 48.3 2.5 65 45-113 42-111 (148)
374 2y75_A HTH-type transcriptiona 95.0 0.028 9.6E-07 44.7 5.1 48 57-109 25-72 (129)
375 3r4k_A Transcriptional regulat 95.0 0.0069 2.4E-07 54.7 1.6 58 47-110 9-67 (260)
376 3bro_A Transcriptional regulat 95.0 0.017 5.9E-07 46.2 3.8 65 45-113 35-104 (141)
377 3e6m_A MARR family transcripti 95.0 0.031 1E-06 46.1 5.4 65 45-113 54-121 (161)
378 2frh_A SARA, staphylococcal ac 94.9 0.0075 2.6E-07 48.0 1.4 65 45-113 38-107 (127)
379 3ufb_A Type I restriction-modi 94.9 0.1 3.5E-06 52.0 9.9 111 214-325 205-363 (530)
380 1r7j_A Conserved hypothetical 94.9 0.013 4.5E-07 44.1 2.6 56 49-114 13-68 (95)
381 2pex_A Transcriptional regulat 94.9 0.013 4.3E-07 47.9 2.7 66 45-114 48-116 (153)
382 2fbi_A Probable transcriptiona 94.8 0.0099 3.4E-07 47.7 1.8 66 44-113 36-104 (142)
383 3deu_A Transcriptional regulat 94.8 0.014 4.9E-07 48.6 2.8 66 44-113 53-122 (166)
384 3cjn_A Transcriptional regulat 94.8 0.013 4.5E-07 48.4 2.5 66 44-113 52-120 (162)
385 3lwf_A LIN1550 protein, putati 94.8 0.033 1.1E-06 46.2 5.0 46 57-107 43-88 (159)
386 3boq_A Transcriptional regulat 94.7 0.072 2.5E-06 43.6 6.9 65 45-113 48-116 (160)
387 3k69_A Putative transcription 94.6 0.048 1.6E-06 45.3 5.5 49 57-110 27-75 (162)
388 2lkp_A Transcriptional regulat 94.5 0.024 8.2E-07 44.3 3.4 47 44-95 32-78 (119)
389 1z91_A Organic hydroperoxide r 94.5 0.013 4.3E-07 47.5 1.7 67 44-114 40-109 (147)
390 1p6r_A Penicillinase repressor 94.5 0.025 8.6E-07 41.0 3.2 51 45-95 10-60 (82)
391 2pg4_A Uncharacterized protein 94.4 0.015 5.1E-07 43.6 1.8 59 49-113 20-83 (95)
392 2f2e_A PA1607; transcription f 94.4 0.026 9E-07 46.1 3.4 80 20-113 9-90 (146)
393 3t8r_A Staphylococcus aureus C 94.3 0.042 1.4E-06 44.7 4.6 48 57-109 27-74 (143)
394 2zig_A TTHA0409, putative modi 94.2 0.041 1.4E-06 50.6 4.8 52 213-268 223-275 (297)
395 3fm5_A Transcriptional regulat 94.2 0.021 7.3E-07 46.4 2.6 66 44-113 39-108 (150)
396 1ylf_A RRF2 family protein; st 94.2 0.046 1.6E-06 44.7 4.6 62 39-110 15-76 (149)
397 4b8x_A SCO5413, possible MARR- 94.2 0.032 1.1E-06 45.5 3.6 63 47-113 38-105 (147)
398 3nqo_A MARR-family transcripti 94.2 0.074 2.5E-06 45.2 6.0 68 43-114 40-112 (189)
399 1sfx_A Conserved hypothetical 94.2 0.028 9.5E-07 42.7 3.0 47 45-95 21-67 (109)
400 2g7u_A Transcriptional regulat 94.2 0.017 5.8E-07 52.0 2.1 59 47-113 17-76 (257)
401 2o0y_A Transcriptional regulat 94.1 0.022 7.6E-07 51.3 2.6 56 47-109 26-82 (260)
402 4aik_A Transcriptional regulat 94.0 0.052 1.8E-06 44.4 4.5 64 46-113 33-100 (151)
403 2ia2_A Putative transcriptiona 93.9 0.018 6.1E-07 52.1 1.7 56 47-110 24-80 (265)
404 3u2r_A Regulatory protein MARR 93.9 0.025 8.6E-07 47.0 2.4 66 44-113 46-116 (168)
405 2h09_A Transcriptional regulat 93.8 0.051 1.7E-06 44.5 4.1 55 52-113 48-102 (155)
406 2x4h_A Hypothetical protein SS 93.6 0.04 1.4E-06 44.2 3.1 50 56-113 29-78 (139)
407 1bja_A Transcription regulator 93.6 0.037 1.3E-06 41.4 2.6 61 46-114 18-79 (95)
408 2fxa_A Protease production reg 93.5 0.023 7.9E-07 49.3 1.5 65 45-113 49-116 (207)
409 2k4b_A Transcriptional regulat 93.4 0.021 7E-07 43.4 0.8 51 45-95 36-86 (99)
410 2qvo_A Uncharacterized protein 93.1 0.03 1E-06 41.9 1.5 48 59-113 31-81 (95)
411 3r0a_A Putative transcriptiona 92.9 0.051 1.7E-06 42.9 2.6 46 46-95 28-75 (123)
412 2fbk_A Transcriptional regulat 92.8 0.037 1.3E-06 46.7 1.8 65 45-113 70-140 (181)
413 2lnb_A Z-DNA-binding protein 1 92.7 0.063 2.1E-06 38.0 2.5 55 45-106 20-75 (80)
414 2w25_A Probable transcriptiona 92.7 0.084 2.9E-06 43.0 3.8 46 45-94 8-53 (150)
415 1xd7_A YWNA; structural genomi 92.7 0.15 5E-06 41.5 5.2 46 58-110 24-69 (145)
416 2cfx_A HTH-type transcriptiona 92.7 0.086 2.9E-06 42.7 3.8 46 45-94 6-51 (144)
417 2p4w_A Transcriptional regulat 92.7 0.088 3E-06 45.4 4.0 66 39-109 10-80 (202)
418 3hrs_A Metalloregulator SCAR; 92.6 0.057 1.9E-06 47.1 2.7 51 56-113 18-68 (214)
419 2pn6_A ST1022, 150AA long hypo 92.3 0.077 2.6E-06 43.2 3.0 46 45-94 4-49 (150)
420 2p5v_A Transcriptional regulat 92.2 0.11 3.6E-06 43.1 3.8 46 45-94 11-56 (162)
421 2dk5_A DNA-directed RNA polyme 92.0 0.11 3.8E-06 38.6 3.3 45 46-94 22-68 (91)
422 1ku9_A Hypothetical protein MJ 91.7 0.098 3.4E-06 42.0 3.0 44 48-95 30-74 (152)
423 1hsj_A Fusion protein consisti 91.7 0.046 1.6E-06 53.7 1.1 66 44-113 404-474 (487)
424 2d1h_A ST1889, 109AA long hypo 91.5 0.11 3.9E-06 39.2 3.0 36 56-95 34-69 (109)
425 2ia0_A Putative HTH-type trans 91.4 0.15 5E-06 42.7 3.8 46 45-94 18-63 (171)
426 1okr_A MECI, methicillin resis 91.3 0.061 2.1E-06 42.0 1.3 50 46-95 12-61 (123)
427 2dbb_A Putative HTH-type trans 91.3 0.13 4.4E-06 41.9 3.3 46 45-94 10-55 (151)
428 2cg4_A Regulatory protein ASNC 91.2 0.13 4.3E-06 42.1 3.2 46 45-94 9-54 (152)
429 2cyy_A Putative HTH-type trans 91.2 0.11 3.8E-06 42.4 2.8 46 45-94 8-53 (151)
430 1sd4_A Penicillinase repressor 91.1 0.091 3.1E-06 41.2 2.1 51 45-95 11-61 (126)
431 3i4p_A Transcriptional regulat 91.0 0.13 4.3E-06 42.7 3.0 46 45-94 4-49 (162)
432 1p4x_A Staphylococcal accessor 90.8 0.097 3.3E-06 46.8 2.2 65 45-113 159-228 (250)
433 1q1h_A TFE, transcription fact 90.7 0.087 3E-06 40.4 1.6 45 46-94 20-65 (110)
434 2e1c_A Putative HTH-type trans 90.7 0.15 5.3E-06 42.6 3.2 47 44-94 27-73 (171)
435 1i1g_A Transcriptional regulat 90.6 0.14 4.6E-06 41.1 2.8 45 46-94 6-50 (141)
436 4fx0_A Probable transcriptiona 90.6 0.11 3.7E-06 42.3 2.2 63 46-113 35-105 (148)
437 2g9w_A Conserved hypothetical 90.4 0.17 5.9E-06 40.5 3.2 47 45-95 10-61 (138)
438 1uly_A Hypothetical protein PH 90.3 0.23 7.7E-06 42.5 4.0 51 40-95 16-66 (192)
439 2qlz_A Transcription factor PF 90.2 0.053 1.8E-06 47.9 -0.1 67 39-110 7-79 (232)
440 2obp_A Putative DNA-binding pr 90.1 0.3 1E-05 36.6 4.0 36 57-96 35-70 (96)
441 3tos_A CALS11; methyltransfera 90.0 0.41 1.4E-05 42.8 5.6 95 227-325 69-218 (257)
442 3cta_A Riboflavin kinase; stru 89.8 0.16 5.6E-06 44.6 2.8 54 57-114 26-79 (230)
443 3k2z_A LEXA repressor; winged 89.4 0.25 8.5E-06 42.2 3.6 39 52-94 17-56 (196)
444 2esh_A Conserved hypothetical 89.2 0.57 2E-05 36.4 5.3 69 40-113 9-90 (118)
445 2vn2_A DNAD, chromosome replic 89.1 0.15 5.2E-06 40.4 1.8 34 58-95 51-84 (128)
446 3eyi_A Z-DNA-binding protein 1 87.9 0.53 1.8E-05 32.4 3.6 46 46-95 12-58 (72)
447 4g6q_A Putative uncharacterize 87.9 0.16 5.6E-06 42.9 1.3 70 38-112 17-92 (182)
448 3ggo_A Prephenate dehydrogenas 87.7 2.3 8E-05 39.0 9.2 89 228-321 33-125 (314)
449 3u1d_A Uncharacterized protein 87.5 0.35 1.2E-05 39.4 3.0 67 45-115 30-107 (151)
450 3mag_A VP39; methylated adenin 87.3 2.2 7.4E-05 38.5 8.3 80 227-329 60-143 (307)
451 1p4x_A Staphylococcal accessor 87.3 0.29 9.9E-06 43.7 2.7 65 45-113 35-104 (250)
452 1g60_A Adenine-specific methyl 87.2 0.66 2.3E-05 41.4 5.1 52 213-268 200-252 (260)
453 2o03_A Probable zinc uptake re 86.9 0.48 1.6E-05 37.6 3.5 50 42-95 9-64 (131)
454 1v4r_A Transcriptional repress 86.9 0.36 1.2E-05 36.4 2.7 51 40-94 15-67 (102)
455 1g55_A DNA cytosine methyltran 86.5 1.8 6.2E-05 40.3 7.9 122 228-375 2-145 (343)
456 1bia_A BIRA bifunctional prote 85.8 0.5 1.7E-05 43.8 3.5 57 46-108 7-63 (321)
457 3ps9_A TRNA 5-methylaminomethy 85.3 0.88 3E-05 46.6 5.5 95 227-321 66-216 (676)
458 2fe3_A Peroxide operon regulat 84.9 0.93 3.2E-05 36.6 4.4 49 43-95 21-75 (145)
459 2hoe_A N-acetylglucosamine kin 84.8 0.57 2E-05 44.3 3.6 54 37-95 13-66 (380)
460 1sfu_A 34L protein; protein/Z- 84.7 0.58 2E-05 33.1 2.6 42 50-95 21-62 (75)
461 2o0m_A Transcriptional regulat 84.6 0.19 6.3E-06 47.2 0.0 62 46-115 22-83 (345)
462 1fx7_A Iron-dependent represso 84.3 0.43 1.5E-05 41.8 2.2 47 60-113 26-72 (230)
463 3pvc_A TRNA 5-methylaminomethy 84.1 0.54 1.8E-05 48.3 3.2 118 227-377 58-231 (689)
464 2qlz_A Transcription factor PF 84.1 0.58 2E-05 41.2 3.0 53 46-106 167-219 (232)
465 2xvc_A ESCRT-III, SSO0910; cel 83.7 0.68 2.3E-05 30.6 2.4 45 46-94 12-57 (59)
466 3iht_A S-adenosyl-L-methionine 83.4 4.1 0.00014 33.2 7.3 104 216-326 31-149 (174)
467 4esf_A PADR-like transcription 83.3 1.3 4.3E-05 34.4 4.4 70 39-113 6-86 (117)
468 1j5y_A Transcriptional regulat 83.3 0.61 2.1E-05 39.4 2.7 57 44-108 21-79 (187)
469 2b0l_A GTP-sensing transcripti 83.2 0.45 1.5E-05 36.0 1.6 43 48-94 32-75 (102)
470 1z6r_A MLC protein; transcript 82.6 0.92 3.1E-05 43.3 4.0 48 44-95 16-63 (406)
471 1jhg_A Trp operon repressor; c 82.5 2.2 7.6E-05 32.1 5.2 42 42-88 43-84 (101)
472 3l7w_A Putative uncharacterize 81.9 0.62 2.1E-05 35.5 2.0 66 43-113 8-81 (108)
473 2p5k_A Arginine repressor; DNA 81.9 1.3 4.4E-05 29.8 3.5 36 50-92 11-51 (64)
474 1z05_A Transcriptional regulat 81.8 1.3 4.3E-05 42.7 4.6 50 42-95 37-86 (429)
475 2v79_A DNA replication protein 81.8 0.4 1.4E-05 38.4 0.9 49 58-110 51-104 (135)
476 2xig_A Ferric uptake regulatio 81.5 1.2 4.3E-05 36.1 3.9 49 43-95 26-80 (150)
477 3g7u_A Cytosine-specific methy 81.5 4.8 0.00017 37.9 8.5 96 229-327 3-121 (376)
478 2oo3_A Protein involved in cat 81.5 2.4 8.4E-05 38.2 6.1 98 228-329 92-203 (283)
479 2yu3_A DNA-directed RNA polyme 81.5 0.73 2.5E-05 34.3 2.2 47 45-95 38-86 (95)
480 3elk_A Putative transcriptiona 81.3 1 3.4E-05 35.0 3.1 72 38-114 8-90 (117)
481 3i71_A Ethanolamine utilizatio 81.3 1.9 6.4E-05 28.5 3.7 44 57-108 17-60 (68)
482 3rkx_A Biotin-[acetyl-COA-carb 81.1 1.1 3.7E-05 41.5 3.7 57 46-108 5-63 (323)
483 2qq9_A Diphtheria toxin repres 81.0 1.2 4.3E-05 38.7 3.9 49 58-113 24-72 (226)
484 3f8b_A Transcriptional regulat 80.3 1.8 6.3E-05 33.3 4.3 70 39-113 7-89 (116)
485 1zkd_A DUF185; NESG, RPR58, st 80.1 4.5 0.00015 38.3 7.7 61 196-261 54-121 (387)
486 3b1f_A Putative prephenate deh 80.0 8.7 0.0003 34.3 9.5 88 229-321 7-98 (290)
487 2vxz_A Pyrsv_GP04; viral prote 79.8 1.1 3.9E-05 35.9 2.9 44 47-95 14-57 (165)
488 3cuq_B Vacuolar protein-sortin 79.7 1.8 6.1E-05 37.6 4.4 37 56-96 166-202 (218)
489 2pjp_A Selenocysteine-specific 79.4 0.76 2.6E-05 35.9 1.8 54 46-107 9-62 (121)
490 1xma_A Predicted transcription 78.1 0.95 3.2E-05 36.6 2.0 68 41-113 38-118 (145)
491 3mwm_A ZUR, putative metal upt 78.0 1.3 4.4E-05 35.5 2.8 65 42-106 12-79 (139)
492 2py6_A Methyltransferase FKBM; 77.7 2.1 7.1E-05 41.0 4.7 41 226-266 225-268 (409)
493 1mzb_A Ferric uptake regulatio 77.6 1.3 4.6E-05 35.1 2.8 48 44-95 18-72 (136)
494 2p8t_A Hypothetical protein PH 76.6 1.4 4.8E-05 37.6 2.7 49 57-113 29-77 (200)
495 2g5c_A Prephenate dehydrogenas 76.2 12 0.00042 33.1 9.2 88 230-322 3-94 (281)
496 1vpt_A VP39; RNA CAP, poly(A) 76.1 9.7 0.00033 34.7 8.2 79 228-329 76-158 (348)
497 1yg2_A Gene activator APHA; vi 76.1 1.7 5.9E-05 36.3 3.2 63 45-112 3-78 (179)
498 2dph_A Formaldehyde dismutase; 75.6 9.3 0.00032 36.0 8.7 99 225-326 183-301 (398)
499 1pl8_A Human sorbitol dehydrog 75.5 6.2 0.00021 36.6 7.2 93 225-325 169-274 (356)
500 3hhh_A Transcriptional regulat 75.4 2 6.8E-05 33.2 3.1 71 38-113 7-88 (116)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=5e-54 Score=414.20 Aligned_cols=330 Identities=25% Similarity=0.407 Sum_probs=291.6
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~ 99 (390)
+.+++..|++++.||+.+++|++|++|||||.|.+. ||+|++|||+++|+ +++.+.|+||+|++.|++.+.....
T Consensus 5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~~ 80 (353)
T 4a6d_A 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRGG 80 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccCc
Confidence 447889999999999999999999999999999875 58999999999999 9999999999999999997643234
Q ss_pred CcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCc
Q 016366 100 ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGI 179 (390)
Q Consensus 100 ~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~ 179 (390)
.+.|++|+.+..++.+.++.++++++.+.. +..+..|. .|.+++++|++
T Consensus 81 ~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~------------------------------~L~~~vr~g~~ 129 (353)
T 4a6d_A 81 KAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWG------------------------------HLADAVREGRN 129 (353)
T ss_dssp EEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHT------------------------------THHHHHHHTSC
T ss_pred cceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHH------------------------------HHHHHHhcCCC
Confidence 568999999988777766677887776542 33445554 89999999999
Q ss_pred hhhhhcC---CChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEE
Q 016366 180 PFNRVHG---MHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVN 256 (390)
Q Consensus 180 ~~~~~~g---~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~ 256 (390)
++...+| .++|+++.++|+....|+++|...+....+.+++.++ +++..+|||||||+|.++..+++++|++++++
T Consensus 130 ~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~ 208 (353)
T 4a6d_A 130 QYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITV 208 (353)
T ss_dssp CHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEE
T ss_pred hhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEe
Confidence 9888877 4688999999999999999999999888888999888 88889999999999999999999999999999
Q ss_pred ecchHHHhhCCC------CCCceEEECCCCC-CCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 257 FDLPHVVQDAPS------YAGVEHVGGNMFE-SVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 257 ~Dl~~~~~~a~~------~~rv~~~~gd~~~-~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
+|+|.+++.+++ .+||+++.+|+++ +.|.+|+|++.++||+|+|+++.++|++++++|+|||+++|+|.+.++
T Consensus 209 ~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~ 288 (353)
T 4a6d_A 209 FDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDE 288 (353)
T ss_dssp EECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCT
T ss_pred ccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCC
Confidence 999999988765 2789999999998 566679999999999999999999999999999999999999999887
Q ss_pred CCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 330 IPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 330 ~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
++... .....+|+.|+..+ +|++||.+||+++|+++||+.+++.+.++..++|+++|
T Consensus 289 ~~~~~---~~~~~~dl~ml~~~-~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 289 DRRGP---LLTQLYSLNMLVQT-EGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp TSCCC---HHHHHHHHHHHHSS-SCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CCCCC---HHHHHHHHHHHHhC-CCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 54432 23457889998876 99999999999999999999999999999999999998
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=4.6e-53 Score=409.09 Aligned_cols=341 Identities=47% Similarity=0.876 Sum_probs=301.6
Q ss_pred chHHhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhc--CCCCHHHHHHHhcc-CCCCCCC---cHHHHHHHHhcCc
Q 016366 17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GELSAPEIAAQLQA-QNVKAPM---MLDRMLRLLVSHR 90 (390)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~--g~~t~~eLa~~~~~-~~~~~~~---~l~r~L~~L~~~g 90 (390)
...++.+++..+++++.+++.+++|++|+++||||.|.++ +|.|++|||+++|+ + +++ .|+||||+|++.|
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~---~~~~~~~l~rlLr~L~~~g 89 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAA---NPEAPDMVDRILRLLASYN 89 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTT---CTTHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCC---CccchhhHHHHHHHHHhCC
Confidence 4455778999999999999999999999999999999984 48999999999995 2 455 8999999999999
Q ss_pred ceeeccc--CC---CcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchh
Q 016366 91 VLECSVS--GG---ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNA 165 (390)
Q Consensus 91 ll~~~~~--~~---~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (390)
+|.+... .+ ++.|++|+.+..|..+.++.+++.++.+..++.++..|.
T Consensus 90 ~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 142 (364)
T 3p9c_A 90 VVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWY--------------------------- 142 (364)
T ss_dssp SEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGG---------------------------
T ss_pred CEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHh---------------------------
Confidence 9987310 01 478999999998887776668888887766676777776
Q ss_pred hccchhhhHhcCCchhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHH
Q 016366 166 CRLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMI 245 (390)
Q Consensus 166 ~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l 245 (390)
+|.+++++|.++++..+|.++|+|+..+|+..+.|+++|...+....+.+++.++++++..+|||||||+|.++..+
T Consensus 143 ---~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l 219 (364)
T 3p9c_A 143 ---YLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAI 219 (364)
T ss_dssp ---GHHHHHHHCSCHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHH
T ss_pred ---CHHHHHhhCCChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHH
Confidence 89999999999999999999999999999999999999999888888888888876778899999999999999999
Q ss_pred HhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 246 TSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 246 ~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
++++|+++++++|+|.+++.+++.++|+++.+|+++++|.+|+|++.+++|+|+++++.++|++++++|+|||+++|.|.
T Consensus 220 ~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 220 AAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp HHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99999999999999999999999899999999999888877999999999999999999999999999999999999999
Q ss_pred ccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 326 IVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
+.++.+...........+|+.|+....+|+.||.++|+++|+++||+.+++.++.+..++||++|
T Consensus 300 ~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 300 ILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp CBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred ccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 98775443333334467888888544589999999999999999999999999999999999997
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=3.5e-53 Score=410.67 Aligned_cols=357 Identities=51% Similarity=0.905 Sum_probs=299.1
Q ss_pred CCchhHHHHhhccCCcchHHhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhc-C---CCCHHHHHHHhccCCCCCC
Q 016366 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-G---ELSAPEIAAQLQAQNVKAP 76 (390)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~-g---~~t~~eLa~~~~~~~~~~~ 76 (390)
|||+.|-|...+ + ...++.+++.++++++.+++.+++|++|+++||||.|.+. | |.|++|||++++..++.++
T Consensus 1 ~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~ 77 (368)
T 3reo_A 1 MGSTGNAEIQII-P--THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAP 77 (368)
T ss_dssp -------------------CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHH
T ss_pred CCCccccccccc-C--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcch
Confidence 888888765322 2 3446778999999999999999999999999999999984 3 6999999999983111122
Q ss_pred CcHHHHHHHHhcCcceeeccc--CC---CcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCc
Q 016366 77 MMLDRMLRLLVSHRVLECSVS--GG---ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSG 151 (390)
Q Consensus 77 ~~l~r~L~~L~~~gll~~~~~--~~---~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (390)
..|+||||+|++.|+|.+... .. +++|++|+.+..|..+.++.+++.++.+..++.++..|.
T Consensus 78 ~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 144 (368)
T 3reo_A 78 VMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWF------------- 144 (368)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGG-------------
T ss_pred hhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhh-------------
Confidence 499999999999999987310 01 368999999998887776678888887776676777776
Q ss_pred chhhhhhccccchhhccchhhhHhcCCchhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceE
Q 016366 152 QIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERL 231 (390)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~i 231 (390)
+|.+++++|.++|+..+|.++|+|+..+|+..+.|+++|...+....+.+++.++++++..+|
T Consensus 145 -----------------~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~v 207 (368)
T 3reo_A 145 -----------------YLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTI 207 (368)
T ss_dssp -----------------GHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEE
T ss_pred -----------------chHHHHhcCCCHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEE
Confidence 899999999999999999999999999999999999999998888888888888657778999
Q ss_pred EEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHH
Q 016366 232 VDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCY 311 (390)
Q Consensus 232 LDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~ 311 (390)
||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|+++++|.+|+|++.+++|+|+++++.++|++++
T Consensus 208 lDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~ 287 (368)
T 3reo_A 208 VDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCY 287 (368)
T ss_dssp EEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHH
T ss_pred EEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988999999999998888779999999999999999999999999
Q ss_pred HhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 312 KAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 312 ~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
++|+|||+++|.|.+.++.+...........+|+.|+....+++.||.++|+++|+++||+++++.+..+..+++|++|
T Consensus 288 ~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 288 AALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp HHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 9999999999999998775544333445567888888654589999999999999999999999999999999999987
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=4.3e-48 Score=372.40 Aligned_cols=324 Identities=25% Similarity=0.354 Sum_probs=286.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
..++..++++++.+++.+++|++++++||||.|.+ ||.|++|||+++|+ +++.++||||+|++.|+|.+ ++
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~----~~ 89 (348)
T 3lst_A 19 RLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD-GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRE----SD 89 (348)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT-SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ET
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEe----cC
Confidence 34788889999999999999999999999999987 69999999999999 99999999999999999995 46
Q ss_pred cceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCch
Q 016366 101 RLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIP 180 (390)
Q Consensus 101 ~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~ 180 (390)
+.|++|+.+..|..+.+ .++++++.+..++.++..|. +|.+.+++|.++
T Consensus 90 ~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~------------------------------~l~~~l~~g~~~ 138 (348)
T 3lst_A 90 GRFALTDKGAALRSDSP-VPARAGILMFTDTMFWTMSH------------------------------RVASALGPERPA 138 (348)
T ss_dssp TEEEECTTTGGGSTTSS-SCSHHHHHHHTSHHHHHHHH------------------------------THHHHTCTTCCC
T ss_pred CEEecCHHHHHHhcCCC-ccHHHHHHHhcCHHHHHHHH------------------------------HHHHHHhcCCCh
Confidence 89999999998865543 46788777666665667776 899999999999
Q ss_pred hhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecch
Q 016366 181 FNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP 260 (390)
Q Consensus 181 ~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~ 260 (390)
++..+|.++|+|+.++|+..+.|++.|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|++
T Consensus 139 ~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 217 (348)
T 3lst_A 139 FADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA 217 (348)
T ss_dssp HHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH
T ss_pred hhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH
Confidence 9999998999999999999999999999988877788888888 888899999999999999999999999999999998
Q ss_pred HHHhhCCC-----CCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcch
Q 016366 261 HVVQDAPS-----YAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS 335 (390)
Q Consensus 261 ~~~~~a~~-----~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~ 335 (390)
.++...+. .+||+++.+|+++++|..|+|++.+++|+|+++++.++|++++++|||||+++|.|.+.++...+
T Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~-- 295 (348)
T 3lst_A 218 EVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA-- 295 (348)
T ss_dssp HHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC--
T ss_pred HHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc--
Confidence 88773321 25799999999987774499999999999999999999999999999999999999988765332
Q ss_pred HHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 336 AARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 336 ~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
.....+++.|+... +++.++.++|+++|+++||+++++.+..+..++++++|
T Consensus 296 --~~~~~~d~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 296 --HQSKEMDFMMLAAR-TGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp --CHHHHHHHHHHHTT-SCCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred --chhhhcChhhhhcC-CCcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 22346777777654 89999999999999999999999999888899999985
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=3.2e-48 Score=376.10 Aligned_cols=327 Identities=24% Similarity=0.442 Sum_probs=290.7
Q ss_pred hHHhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeeccc
Q 016366 18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 97 (390)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~ 97 (390)
+........++++++.+++.+++|++++++||||.|.+ ||.|++|||+++|+ +++.++||||+|++.|++.+
T Consensus 32 ~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~--- 103 (369)
T 3gwz_A 32 TAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDD--- 103 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEE---
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEE---
Confidence 34445778899999999999999999999999999996 69999999999999 99999999999999999997
Q ss_pred CCCcc-eecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhc
Q 016366 98 GGERL-YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVME 176 (390)
Q Consensus 98 ~~~~~-y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 176 (390)
..++. |++|+.++.|..+.+ .++++++.+..++..+..|. +|.+++++
T Consensus 104 ~~~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~------------------------------~l~~~l~~ 152 (369)
T 3gwz_A 104 LGHDDLFAQNALSAVLLPDPA-SPVATDARFQAAPWHWRAWE------------------------------QLTHSVRT 152 (369)
T ss_dssp CSSTTEEECCHHHHTTSCCTT-CHHHHHHHHHHSHHHHHHHH------------------------------THHHHHHH
T ss_pred eCCCceEecCHHHHHHhcCCc-hhHHHHHHHcCCHHHHHHHH------------------------------hHHHHHhC
Confidence 35678 999999998865443 46888887766655566776 89999999
Q ss_pred CCchhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEE
Q 016366 177 GGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVN 256 (390)
Q Consensus 177 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~ 256 (390)
|.++|...+|.++|+|+.++|+..+.|+++|...+....+.+++.++ +++..+|||||||+|.++..+++++|++++++
T Consensus 153 g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~ 231 (369)
T 3gwz_A 153 GEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTL 231 (369)
T ss_dssp SSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEE
T ss_pred CCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEE
Confidence 99999999998999999999999999999999998888888988887 88889999999999999999999999999999
Q ss_pred ecchHHHhhCCC-------CCCceEEECCCCCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 257 FDLPHVVQDAPS-------YAGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 257 ~Dl~~~~~~a~~-------~~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
+|+|.+++.+++ .++|+++.+|+++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|.+.+
T Consensus 232 ~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 311 (369)
T 3gwz_A 232 LERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLID 311 (369)
T ss_dssp EECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred EcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 999989988875 368999999999877754 999999999999999999999999999999999999999987
Q ss_pred CCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe-cCCceeEEEEeC
Q 016366 329 EIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS-CVCNLYIMEFFK 390 (390)
Q Consensus 329 ~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~k 390 (390)
+.... . ...+++.|+... +++.+|.++|+++|+++||+++++.+ ..+..++|+++|
T Consensus 312 ~~~~~----~-~~~~d~~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 312 ERPAA----S-TLFVDLLLLVLV-GGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp SSCCH----H-HHHHHHHHHHHH-SCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred CCCCC----c-hhHhhHHHHhhc-CCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 75322 1 457788887765 89999999999999999999999999 678899999986
No 6
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=1.8e-47 Score=371.27 Aligned_cols=341 Identities=42% Similarity=0.738 Sum_probs=275.6
Q ss_pred HHhhHHHHHHH--HHHhhhhHHHHHHHHHHhChhHHHhhcC-C---CCHHHHHHHhcc--CCCCCCCcHHHHHHHHhcCc
Q 016366 19 EEEEESYSHAM--QLAMGVVLPMATQAAIQLGVFEIIAKAG-E---LSAPEIAAQLQA--QNVKAPMMLDRMLRLLVSHR 90 (390)
Q Consensus 19 ~~~~~~~~~l~--~~~~~~~~~~~l~~a~~lglfd~L~~~g-~---~t~~eLa~~~~~--~~~~~~~~l~r~L~~L~~~g 90 (390)
++..++...++ +++.+++.+++|++|+++|||+.|.+.| | .|++|||+++|+ +++.+++.++||||+|++.|
T Consensus 17 ~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~g 96 (372)
T 1fp1_D 17 SEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYS 96 (372)
T ss_dssp --CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCC
Confidence 34557777888 9999999999999999999999999755 6 999999999998 13336789999999999999
Q ss_pred ceeecc---cCC--CcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchh
Q 016366 91 VLECSV---SGG--ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNA 165 (390)
Q Consensus 91 ll~~~~---~~~--~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (390)
+|.+.. ..+ ++.|++|+.+..|..+.+..++++++.+..++.++..|.
T Consensus 97 ll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 149 (372)
T 1fp1_D 97 VLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWM--------------------------- 149 (372)
T ss_dssp SEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHT---------------------------
T ss_pred ceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHH---------------------------
Confidence 998731 001 368999999987776544246788877766666666675
Q ss_pred hccchhhhHhcC-CchhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHH
Q 016366 166 CRLGLKDAVMEG-GIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSM 244 (390)
Q Consensus 166 ~~~~l~~~l~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~ 244 (390)
+|.+.+++| .++++..+|.++|+++..+|+..+.|++.|...+....+.+++.++.+++..+|||||||+|.++..
T Consensus 150 ---~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~ 226 (372)
T 1fp1_D 150 ---NFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLEL 226 (372)
T ss_dssp ---THHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHH
T ss_pred ---HHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHH
Confidence 999999998 7889888898999999999999999999999888877788888886567788999999999999999
Q ss_pred HHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 245 ITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 245 l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+++++|+++++++|++.+++.+++.++|+++.+|+++++|..|+|++.+++|+|+++++.++|++++++|+|||+++|.|
T Consensus 227 l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 227 IISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp HHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999999999999999999888999999999987776799999999999999999999999999999999999999
Q ss_pred cccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCc-eeEEEEeC
Q 016366 325 SIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCN-LYIMEFFK 390 (390)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 390 (390)
...++.............+++.|+... +++.|+.++|+++|+++||+++++.+...+ .+|||++|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 307 FILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp EEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred eccCCCCccchHHHHHHHhhHHHHhcc-CCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 987765432211123456777776543 788999999999999999999999885433 69999987
No 7
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=4.7e-48 Score=369.82 Aligned_cols=316 Identities=24% Similarity=0.378 Sum_probs=277.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceec
Q 016366 26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (390)
Q Consensus 26 ~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~ 105 (390)
.++++++.|++.+++|++|+++||||.|.+ ||.|++|||+++|+ +++.++||||+|++.|++.+ .+++.|.+
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~---~~~~~y~~ 78 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA-GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTR---DGQGVYGL 78 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---CTTSBEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEe---cCCCeEEc
Confidence 457899999999999999999999999987 79999999999999 99999999999999999997 45789999
Q ss_pred CccccccccCCCCCChHHHHhcccChhhh-hhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCchhhhh
Q 016366 106 NPVSKYFVSNKDGASLGHFMALPLDKVFM-ESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRV 184 (390)
Q Consensus 106 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~ 184 (390)
|+.+..+..+.+ .++++++.+..++..+ ..|. .|.+++++|.++|...
T Consensus 79 t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------------~l~~~l~~~~~~~~~~ 127 (332)
T 3i53_A 79 TEFGEQLRDDHA-AGKRKWLDMNSAVGRGDLGFV------------------------------ELAHSIRTGQPAYPVR 127 (332)
T ss_dssp CTTGGGGSTTCT-TCCHHHHCTTSHHHHHGGGGG------------------------------GHHHHHHHSSCSHHHH
T ss_pred CHhHHHHhcCCc-hhHHHHHHHcCCHhHHHHHHH------------------------------HhHHHHhcCCCHHHHh
Confidence 999999865544 5678887665544333 4554 8999999999999988
Q ss_pred cCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHh
Q 016366 185 HGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQ 264 (390)
Q Consensus 185 ~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~ 264 (390)
+|.++|+++.++|+..+.|.+.|...+....+.+++.++ +++..+|||||||+|.++..+++++|+.+++++|+|.+++
T Consensus 128 ~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 206 (332)
T 3i53_A 128 YGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPAS 206 (332)
T ss_dssp HSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHH
T ss_pred hCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHH
Confidence 998899999999999999999999888777777777777 7778999999999999999999999999999999999998
Q ss_pred hCCC-------CCCceEEECCCCCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchH
Q 016366 265 DAPS-------YAGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSA 336 (390)
Q Consensus 265 ~a~~-------~~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~ 336 (390)
.+++ .++|+++.+|+++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|.+.++. .+
T Consensus 207 ~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~--- 282 (332)
T 3i53_A 207 AAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA--- 282 (332)
T ss_dssp HHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C---
T ss_pred HHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc---
Confidence 8875 268999999999877754 99999999999999989999999999999999999999987764 11
Q ss_pred HhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 337 ARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 337 ~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
...+++.|+... +++.||.++|+++|+++||+++++.+.++ .+++|++|
T Consensus 283 ---~~~~d~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 283 ---GTGMDLRMLTYF-GGKERSLAELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp ---CHHHHHHHHHHH-SCCCCCHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred ---cHHHHHHHHhhC-CCCCCCHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 246777777664 89999999999999999999999999988 99999975
No 8
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=2.3e-47 Score=368.70 Aligned_cols=337 Identities=28% Similarity=0.485 Sum_probs=288.1
Q ss_pred HhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeeccc-
Q 016366 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS- 97 (390)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~- 97 (390)
+..++..++++++.+++.+++|++++++|||+.|.+. ||.|++|||+++|+ ++.+++.++||||+|++.|+|.+...
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~~~ 84 (358)
T 1zg3_A 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTIVK 84 (358)
T ss_dssp CCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEeccc
Confidence 3456667899999999999999999999999999875 49999999999999 33357899999999999999987300
Q ss_pred -CC-----CcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchh
Q 016366 98 -GG-----ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLK 171 (390)
Q Consensus 98 -~~-----~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (390)
.. ++.|++|+.+..|..+.+ .++++++.+..++.++..|. .|.
T Consensus 85 ~~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~------------------------------~L~ 133 (358)
T 1zg3_A 85 GKEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWS------------------------------SSK 133 (358)
T ss_dssp CSSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGG------------------------------GHH
T ss_pred ccccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHH------------------------------HHH
Confidence 01 478999999987776554 57888887766665666665 899
Q ss_pred hhHhcC--CchhhhhcCCChhhhcccCchHHH--HHHHHHhhccHHHHHHHHHHhh-ccCCcceEEEEcCCccHHHHHHH
Q 016366 172 DAVMEG--GIPFNRVHGMHIFEYASGNPRFNE--TYHEAMFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMIT 246 (390)
Q Consensus 172 ~~l~~g--~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~m~~~~~~~~~~l~~~~~-~~~~~~~iLDiG~G~G~~~~~l~ 246 (390)
+.+++| .++|+..+|.++|+++..+|+..+ .|++.|...+.... .+++.++ .+++..+|||||||+|.++..++
T Consensus 134 ~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~ 212 (358)
T 1zg3_A 134 KWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIH 212 (358)
T ss_dssp HHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHH
T ss_pred HHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHH
Confidence 999998 678888889999999999999999 99999998887666 7777773 26677899999999999999999
Q ss_pred hhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCC---CcEEEEE
Q 016366 247 SKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPG---NGKVIVM 323 (390)
Q Consensus 247 ~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~lli~ 323 (390)
+++|+++++++|++.+++.+++.++|+++.+|+++++|..|+|++.++||+|+++++.++|++++++|+| ||+++|.
T Consensus 213 ~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~ 292 (358)
T 1zg3_A 213 EIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIII 292 (358)
T ss_dssp HHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred HHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 9999999999999999999998888999999999877767999999999999999999999999999999 9999999
Q ss_pred ecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 324 NSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 324 e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
|.+.++.............+++.|+... +++.|+.++|+++|+++||+++++.+.++..++||++|
T Consensus 293 e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 293 DISIDETSDDRGLTELQLDYDLVMLTMF-LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp ECEECTTCSCHHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred EeccCCCCccchhhhHHHhhCHHHhccC-CCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 9988765432111234566788777654 88999999999999999999999999888889999986
No 9
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=1.1e-46 Score=363.09 Aligned_cols=336 Identities=28% Similarity=0.491 Sum_probs=288.1
Q ss_pred HHhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeeccc
Q 016366 19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 97 (390)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~ 97 (390)
++..++..++++++.+++.+++|++++++|||+.|... ||.|++|||+++|+ ++.+++.++||||+|++.|+|.+..
T Consensus 11 ~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~~- 88 (352)
T 1fp2_A 11 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT- 88 (352)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEec-
Confidence 45667888999999999999999999999999999875 49999999999999 2324778999999999999998730
Q ss_pred CCCcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHh-c
Q 016366 98 GGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVM-E 176 (390)
Q Consensus 98 ~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~ 176 (390)
.+++.|++|+.+..|..+.+ .++++++.+..++.++..|. .|.+.++ +
T Consensus 89 ~~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~------------------------------~L~~~l~~~ 137 (352)
T 1fp2_A 89 KEEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYH------------------------------ELKKWIYEE 137 (352)
T ss_dssp SSSEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGG------------------------------GHHHHHTCS
T ss_pred CCCCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHH------------------------------HHHHHHHhc
Confidence 02589999999997776554 56888877666655566665 8999999 8
Q ss_pred CCchhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhh-ccCCcceEEEEcCCccHHHHHHHhhCCCCeEE
Q 016366 177 GGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAV 255 (390)
Q Consensus 177 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~-~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~ 255 (390)
|.++++..+|.++|+++.++|+..+.|++.|...+....+. ++.++ .+++..+|||||||+|.++..+++++|+.+++
T Consensus 138 g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~ 216 (352)
T 1fp2_A 138 DLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCI 216 (352)
T ss_dssp SCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEE
T ss_pred CCChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEE
Confidence 88899988899999999999999999999999988877666 77772 26778899999999999999999999999999
Q ss_pred EecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCC---CcEEEEEecccCCCCC
Q 016366 256 NFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPG---NGKVIVMNSIVPEIPE 332 (390)
Q Consensus 256 ~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~lli~e~~~~~~~~ 332 (390)
++|++.+++.+++.++|+++.+|+++++|..|+|++.+++|+|+++++.++|++++++|+| ||+++|.|...++...
T Consensus 217 ~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~ 296 (352)
T 1fp2_A 217 VFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKD 296 (352)
T ss_dssp EEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTS
T ss_pred EeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCC
Confidence 9999999999998888999999998877767999999999999999999999999999999 9999999998776432
Q ss_pred cchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 333 VSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 333 ~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
..........+++.|+. . +++.++.++|+++|+++||+++++.+.++..+|||++|
T Consensus 297 ~~~~~~~~~~~d~~~~~-~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 297 ENQVTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp CHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred ccchhhhHhhccHHHHh-c-cCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 21112334567777776 4 58899999999999999999999999888889999986
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.4e-46 Score=359.79 Aligned_cols=319 Identities=24% Similarity=0.377 Sum_probs=279.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc
Q 016366 23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL 102 (390)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~ 102 (390)
...+.+++++.+++.+++|++++++|||+.|.+ ||.|++|||+++|+ +++.++||||+|++.|++.+ .+++.
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~-~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~---~~~~~ 78 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES-GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQG---DTRDG 78 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---ETTTE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEe---cCCCe
Confidence 466789999999999999999999999999986 69999999999999 99999999999999999987 34579
Q ss_pred eecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCchhh
Q 016366 103 YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFN 182 (390)
Q Consensus 103 y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~ 182 (390)
|++|+.+..+. +. +.++++++.+..++.. ..|. .|.+.+++|.++|+
T Consensus 79 y~~t~~s~~l~-~~-~~~~~~~~~~~~~~~~-~~~~------------------------------~l~~~l~~~~~~~~ 125 (334)
T 2ip2_A 79 YANTPTSHLLR-DV-EGSFRDMVLFYGEEFH-AAWT------------------------------PACEALLSGTPGFE 125 (334)
T ss_dssp EEECHHHHTTS-SS-TTCSHHHHHHHTTHHH-HHTT------------------------------THHHHHHHCCCHHH
T ss_pred EecCHHHHHHh-CC-CccHHHHHHHhcCchh-hHHH------------------------------HHHHHHhcCCChhh
Confidence 99999998877 43 3467887766554433 4554 89999999999998
Q ss_pred hhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHH
Q 016366 183 RVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV 262 (390)
Q Consensus 183 ~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~ 262 (390)
..+|.++|+++.++|+..+.|++.| ..+....+.+++.++ +++ .+|||||||+|.++..+++++|+.+++++|++.+
T Consensus 126 ~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~ 202 (334)
T 2ip2_A 126 LAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGS 202 (334)
T ss_dssp HHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTC
T ss_pred hhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHH
Confidence 8889899999999999999999999 888877788888887 777 9999999999999999999999999999999888
Q ss_pred HhhCCCC-------CCceEEECCCCCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcc
Q 016366 263 VQDAPSY-------AGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS 334 (390)
Q Consensus 263 ~~~a~~~-------~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~ 334 (390)
++.+++. ++|+++.+|+++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|...++...+
T Consensus 203 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~- 281 (334)
T 2ip2_A 203 LGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS- 281 (334)
T ss_dssp THHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC-
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-
Confidence 8887652 68999999999877765 99999999999999999999999999999999999999987664322
Q ss_pred hHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 335 SAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 335 ~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
.....+++.|+... +++.++.++|+++++++||+++++.+.++..++|+++|
T Consensus 282 ---~~~~~~~~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 282 ---PMSVLWDVHLFMAC-AGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp ---HHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred ---chhHHhhhHhHhhC-CCcCCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 23456777777655 78999999999999999999999999988899999986
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=2.2e-44 Score=348.37 Aligned_cols=327 Identities=18% Similarity=0.259 Sum_probs=262.4
Q ss_pred chHHhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+++..++..++++++.|++.+++|++++++||||.|.+ .||.|++|||+++|+ +++.++||||+|++.|+|++
T Consensus 8 ~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~- 82 (363)
T 3dp7_A 8 EQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILL- 82 (363)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE-
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEe-
Confidence 344556788899999999999999999999999999997 469999999999999 99999999999999999985
Q ss_pred ccCCCcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHh
Q 016366 96 VSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVM 175 (390)
Q Consensus 96 ~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 175 (390)
++++|++|+.+..|..+++ ....+.+ ..+..+..|. .|.++++
T Consensus 83 ---~~~~y~~t~~s~~L~~~~~---~~~~~~~-~~~~~~~~~~------------------------------~L~~~lr 125 (363)
T 3dp7_A 83 ---EEDRYVLAKAGWFLLNDKM---ARVNMEF-NHDVNYQGLF------------------------------HLEEALL 125 (363)
T ss_dssp ---ETTEEEECHHHHHHHHCHH---HHHHHHH-HHHTTHHHHT------------------------------THHHHHH
T ss_pred ---cCCEEecccchHHhhCCCc---ccchhee-ecHHhhhhHH------------------------------HHHHHHh
Confidence 4789999999987776543 1122211 2233445554 9999999
Q ss_pred cCCchhhhhcC--CChhhhcccCchHHH----HHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC
Q 016366 176 EGGIPFNRVHG--MHIFEYASGNPRFNE----TYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY 249 (390)
Q Consensus 176 ~g~~~~~~~~g--~~~~~~~~~~~~~~~----~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~ 249 (390)
+|.+++...+| .++|+++.++|+..+ .|++.|..... ..++..+. ..+..+|||||||+|.++..+++++
T Consensus 126 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~ 201 (363)
T 3dp7_A 126 NGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYN 201 (363)
T ss_dssp HSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHS
T ss_pred cCCCccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhC
Confidence 99988887888 689999999998766 36777765543 23444443 3567899999999999999999999
Q ss_pred CCCeEEEecchHHHhhCCCC-------CCceEEECCCCCC---CCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCc
Q 016366 250 PQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFES---VPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNG 318 (390)
Q Consensus 250 p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~~---~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG 318 (390)
|+++++++|+|.+++.++++ +||+++.+|++++ +|.. |+|++.+++|+|+++++.++|++++++|+|||
T Consensus 202 p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG 281 (363)
T 3dp7_A 202 KEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDS 281 (363)
T ss_dssp TTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999888752 5799999999983 6754 99999999999999999999999999999999
Q ss_pred EEEEEecccCCCCCcch-HHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC-CceeEEEEeC
Q 016366 319 KVIVMNSIVPEIPEVSS-AARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFFK 390 (390)
Q Consensus 319 ~lli~e~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 390 (390)
+++|.|.+.++...... ........++.|+.. .+++.|+.++|+++|+++||+++++.+.. ...++++++|
T Consensus 282 ~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 282 KVYIMETLWDRQRYETASYCLTQISLYFTAMAN-GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp EEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSC-SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred EEEEEeeccCCccccchhhHHHHhhhhHHhhhC-CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 99999998876532211 001112233333332 36789999999999999999999998765 5588999875
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=7.1e-44 Score=346.16 Aligned_cols=325 Identities=23% Similarity=0.381 Sum_probs=276.6
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
..+....+++++.+++.+++|++++++|||+.|.. ||.|++|||+++|+ +++.++||||+|++.|++.+ ..+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~---~~~ 84 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEG---GEK 84 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---CCC
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEE---eCC
Confidence 34567789999999999999999999999999975 79999999999999 99999999999999999986 345
Q ss_pred c--ceecCccccccccCCCCCChHHHHhcccChhhh-hhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcC
Q 016366 101 R--LYALNPVSKYFVSNKDGASLGHFMALPLDKVFM-ESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEG 177 (390)
Q Consensus 101 ~--~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g 177 (390)
+ .|++|+.+..+..+.+ .++++++.+..++..+ ..|. .|.+.+++|
T Consensus 85 ~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------------~l~~~l~~~ 133 (374)
T 1qzz_A 85 QGRPLRPTRLGMLLADGHP-AQQRAWLDLNGAVSHADLAFT------------------------------GLLDVVRTG 133 (374)
T ss_dssp -CCCCEECTTGGGGSTTCT-TCHHHHHCTTSHHHHHHGGGG------------------------------GHHHHHHHS
T ss_pred CCeEEEEChHHHhhcCCCc-ccHHHHHHHcCChhhHHHHHH------------------------------HHHHHHhcC
Confidence 6 8999999987776543 5788887766544344 4554 899999999
Q ss_pred CchhhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEe
Q 016366 178 GIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNF 257 (390)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~ 257 (390)
.+++...+|.++|++...+|+....|++.|........+.+++.++ +.+..+|||||||+|.++..+++++|+++++++
T Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~ 212 (374)
T 1qzz_A 134 RPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLV 212 (374)
T ss_dssp CCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred CChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEE
Confidence 9888888899999999999999999999999887777778888877 778899999999999999999999999999999
Q ss_pred cchHHHhhCCCC-------CCceEEECCCCCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec--cc
Q 016366 258 DLPHVVQDAPSY-------AGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS--IV 327 (390)
Q Consensus 258 Dl~~~~~~a~~~-------~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~--~~ 327 (390)
|++.+++.+++. ++|+++.+|+++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|. ..
T Consensus 213 D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (374)
T 1qzz_A 213 ELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVE 292 (374)
T ss_dssp ECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH--
T ss_pred eCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhc
Confidence 998888887752 48999999998877775 999999999999999888999999999999999999998 76
Q ss_pred CCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCce-----eEEEEeC
Q 016366 328 PEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNL-----YIMEFFK 390 (390)
Q Consensus 328 ~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~k 390 (390)
++... ......+++.|+... +++.++.++|.++|+++||+++++...++.. ++++++|
T Consensus 293 ~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 293 GDGAD----RFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp ---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CCCCC----cchhhhcchHHHHhC-CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 54321 123446677776654 7899999999999999999999999988777 8999875
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=1.8e-43 Score=341.69 Aligned_cols=323 Identities=23% Similarity=0.382 Sum_probs=278.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc
Q 016366 23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL 102 (390)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~ 102 (390)
...+++++++.+++.+++|.+++++|||+.|.. |+.|++|||+++|+ ++..++|+|++|++.|+|.+ ..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~---~~~g~ 89 (360)
T 1tw3_A 18 IDALRTLIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEE---DAPGE 89 (360)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---EETTE
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEe---cCCCe
Confidence 557889999999999999999999999999976 69999999999999 99999999999999999986 35678
Q ss_pred eecCccccccccCCCCCChHHHHhcccChh-hhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCchh
Q 016366 103 YALNPVSKYFVSNKDGASLGHFMALPLDKV-FMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPF 181 (390)
Q Consensus 103 y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~ 181 (390)
|++|+.+..+..+.+ .++++++.+...+. .+..|. .|.+.+++|.+++
T Consensus 90 y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------------~l~~~l~~g~~~~ 138 (360)
T 1tw3_A 90 FVPTEVGELLADDHP-AAQRAWHDLTQAVARADISFT------------------------------RLPDAIRTGRPTY 138 (360)
T ss_dssp EEECTTGGGGSTTST-TCHHHHTCTTSHHHHHGGGGG------------------------------GHHHHHHHCCCCH
T ss_pred EEeCHHHHHHhcCCc-hhHHHHHHHhcCchhHHHHHH------------------------------HHHHHHHcCCCHH
Confidence 999999887776543 57888776654432 344454 8889999998888
Q ss_pred hhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchH
Q 016366 182 NRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPH 261 (390)
Q Consensus 182 ~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~ 261 (390)
...+|.++|+++..+|+....|...|........+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|++.
T Consensus 139 ~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~ 217 (360)
T 1tw3_A 139 ESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAG 217 (360)
T ss_dssp HHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTT
T ss_pred HHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHH
Confidence 888898999999999999999999999888777778888887 7788999999999999999999999999999999988
Q ss_pred HHhhCCCC-------CCceEEECCCCCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc-cCCCCC
Q 016366 262 VVQDAPSY-------AGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI-VPEIPE 332 (390)
Q Consensus 262 ~~~~a~~~-------~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~-~~~~~~ 332 (390)
+++.+++. ++|+++.+|+++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|.. .++...
T Consensus 218 ~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~ 297 (360)
T 1tw3_A 218 TVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSF 297 (360)
T ss_dssp HHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCC
T ss_pred HHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCC
Confidence 88877752 48999999999877775 9999999999999998899999999999999999999988 654322
Q ss_pred cchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCc-----eeEEEEeC
Q 016366 333 VSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCN-----LYIMEFFK 390 (390)
Q Consensus 333 ~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-----~~vi~~~k 390 (390)
. .....+++.|+... +++.++.++|+++|+++||+++++.+.++. .++++++|
T Consensus 298 ~----~~~~~~~~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 298 N----EQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp S----HHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred c----chhhhccHHHhhhc-CCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 1 22345677776654 788999999999999999999999988766 78999875
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-42 Score=331.70 Aligned_cols=314 Identities=18% Similarity=0.230 Sum_probs=269.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceec
Q 016366 26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (390)
Q Consensus 26 ~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~ 105 (390)
+.+++++.+++.+++|++++++|||+.|.+ ||.|++|||+++|+ +++.++||||+|++.|+|++ +++.|++
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~----~~~~y~~ 78 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ-GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTK----QAEGYRL 78 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT-SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEe----cCCEEec
Confidence 679999999999999999999999999997 69999999999999 99999999999999999985 5689999
Q ss_pred Ccccc-ccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCchhhhh
Q 016366 106 NPVSK-YFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRV 184 (390)
Q Consensus 106 t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~ 184 (390)
|+.+. .+..+. +.++++++.+..++..+..|. .|.+.+++|.+++.
T Consensus 79 t~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------------~l~~~l~~~~~~~~-- 125 (335)
T 2r3s_A 79 TSDSAMFLDRQS-KFYVGDAIEFLLSPMITNGFN------------------------------DLTAAVLKGGTAIS-- 125 (335)
T ss_dssp CHHHHHHTCTTS-TTCCGGGHHHHTCHHHHGGGT------------------------------THHHHHHHTSCCST--
T ss_pred CHHHHHHhccCC-cHHHHHHHHHhcchhhHHHHH------------------------------hHHHHHhcCCCCCC--
Confidence 99994 554433 456777776655544555554 89999999887654
Q ss_pred cCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhcc--CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHH
Q 016366 185 HGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGF--QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV 262 (390)
Q Consensus 185 ~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~--~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~ 262 (390)
+ |+++.++++....|...|..........+++.++ + .+..+|||||||+|.++..+++++|+.+++++|++.+
T Consensus 126 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~ 200 (335)
T 2r3s_A 126 ---S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASV 200 (335)
T ss_dssp ---T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHH
T ss_pred ---C-cccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHH
Confidence 3 7888889999999999999988887788888887 6 7788999999999999999999999999999999888
Q ss_pred HhhCCCC-------CCceEEECCCCC-CCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCc
Q 016366 263 VQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEV 333 (390)
Q Consensus 263 ~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~ 333 (390)
++.+++. ++|+++.+|+++ +++.. |+|++.+++|+++++++.++|++++++|+|||+++|.|...++....
T Consensus 201 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~ 280 (335)
T 2r3s_A 201 LEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRIT 280 (335)
T ss_dssp HHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSC
T ss_pred HHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCC
Confidence 8887753 479999999998 67765 99999999999999999999999999999999999999987664322
Q ss_pred chHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEe
Q 016366 334 SSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFF 389 (390)
Q Consensus 334 ~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 389 (390)
. .....+++.|+...++++.++.++|+++++++||+++++.+..+..++++++
T Consensus 281 ~---~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 281 P---PDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp S---HHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred c---hHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 2 2344667777766557899999999999999999999999998888877765
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=4.3e-42 Score=331.98 Aligned_cols=313 Identities=19% Similarity=0.341 Sum_probs=259.7
Q ss_pred HhhHHHHHHHHHHh-hhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccC
Q 016366 20 EEEESYSHAMQLAM-GVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG 98 (390)
Q Consensus 20 ~~~~~~~~l~~~~~-~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~ 98 (390)
+..++..++++++. +++.+++|++++++|||+.|.+ ||.|++|||+++|+ +++.++||||+|++.|+|.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~-~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~---- 96 (359)
T 1x19_A 26 DLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINL---- 96 (359)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC-CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEe----
Confidence 33456677888885 8999999999999999999997 79999999999999 99999999999999999996
Q ss_pred CCcceecCccccccccCCCC---CChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHh
Q 016366 99 GERLYALNPVSKYFVSNKDG---ASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVM 175 (390)
Q Consensus 99 ~~~~y~~t~~s~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 175 (390)
.++.|++|+.+..+..+.++ .++++++.+. .+..+..|. .|.++++
T Consensus 97 ~~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------------------~L~~~l~ 145 (359)
T 1x19_A 97 EDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYM------------------------------GLSQAVR 145 (359)
T ss_dssp ETTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGG------------------------------GHHHHHT
T ss_pred eCCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHH------------------------------HHHHHHh
Confidence 35699999976655555444 5677766553 233444454 8899998
Q ss_pred cCCchhhhhcCCChhhhcccCch---HHHHHHHHHhhccH-HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC
Q 016366 176 EGGIPFNRVHGMHIFEYASGNPR---FNETYHEAMFNHST-IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ 251 (390)
Q Consensus 176 ~g~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~m~~~~~-~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~ 251 (390)
+|.+ |++...+|+ ....|...|..... ...+.+++.++ +.+..+|||||||+|.++..+++++|+
T Consensus 146 ~g~~----------~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~ 214 (359)
T 1x19_A 146 GQKN----------FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPE 214 (359)
T ss_dssp TSCC----------CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTT
T ss_pred cCCC----------CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCC
Confidence 7653 677778888 89999999999888 77788888887 788899999999999999999999999
Q ss_pred CeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 252 IKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 252 ~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.+++++|++.+++.+++. ++|+++.+|+++ +++.+|+|++.+++|+|+++++.++|++++++|+|||+++|.
T Consensus 215 ~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~ 294 (359)
T 1x19_A 215 LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 294 (359)
T ss_dssp CEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999998888887742 469999999998 666669999999999999988999999999999999999999
Q ss_pred ecccCCCCCcchHHhhhhhhhhhhhhhcCCCcc----cCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 324 NSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE----RTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 324 e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
|...++...+ .. ...+ .|+....+++. ++.++|+++|+++||+++++.+.+ ..++++++|
T Consensus 295 e~~~~~~~~~-~~---~~~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 295 DMVIDDPENP-NF---DYLS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp EECCCCTTSC-CH---HHHH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred ecccCCCCCc-hH---HHHH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 9887664211 11 1122 33332335667 999999999999999999999887 888999987
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=9.5e-42 Score=328.60 Aligned_cols=316 Identities=14% Similarity=0.205 Sum_probs=258.4
Q ss_pred HhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCC
Q 016366 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (390)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~ 99 (390)
...++...+++++.+++.+++|++++++|||+.|.+ |.|++|||+++|+ +++.++||||+|++.|++.+ .
T Consensus 20 ~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~--~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~----~ 89 (352)
T 3mcz_A 20 AALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT--GRTPAEVAASFGM----VEGKAAILLHALAALGLLTK----E 89 (352)
T ss_dssp CCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----E
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC--CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEe----c
Confidence 334555669999999999999999999999999975 9999999999999 99999999999999999996 3
Q ss_pred CcceecCccccccccCCCCCChHHHHhcccChhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCc
Q 016366 100 ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGI 179 (390)
Q Consensus 100 ~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~ 179 (390)
++.|++|+.+..++.+..+.+++.++.+. ...+..|. +|.+.+++|.+
T Consensus 90 ~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~------------------------------~l~~~l~~g~~ 137 (352)
T 3mcz_A 90 GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWP------------------------------RLGEILRSEKP 137 (352)
T ss_dssp TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGG------------------------------GHHHHHTCSSC
T ss_pred CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHH------------------------------HHHHHHhCCCC
Confidence 57899999998776666556677665432 12333443 89999998865
Q ss_pred h-hhhhcCCChhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCC-cceEEEEcCCccHHHHHHHhhCCCCeEEEe
Q 016366 180 P-FNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQN-VERLVDVGGGFGVTLSMITSKYPQIKAVNF 257 (390)
Q Consensus 180 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~-~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~ 257 (390)
. |... .++..+|+....|.++|...... +..+++.++ +.+ ..+|||||||+|.++..+++++|+.+++++
T Consensus 138 ~~f~~~------~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~ 209 (352)
T 3mcz_A 138 LAFQQE------SRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIW 209 (352)
T ss_dssp CTTSHH------HHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEE
T ss_pred CCcccc------cccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEE
Confidence 3 2221 23356888889999999873332 346788887 666 889999999999999999999999999999
Q ss_pred cchHHHhhCCCC-------CCceEEECCCCC-C--CCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 258 DLPHVVQDAPSY-------AGVEHVGGNMFE-S--VPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 258 Dl~~~~~~a~~~-------~rv~~~~gd~~~-~--~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|++.+++.+++. ++|+++.+|+++ + .+.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|.+
T Consensus 210 D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 210 DLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp ECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 998888877652 479999999998 4 5665 9999999999999999999999999999999999999998
Q ss_pred cCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 327 VPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 327 ~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
.++..... .....+++.|+....+++.++.++|+++|+++||++++.. .+..++++++|
T Consensus 290 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 290 MNDDRVTP---ALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp CCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred cCCCCCCC---chHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 87754322 2345678888766668899999999999999999999843 36678888776
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.86 E-value=1e-20 Score=173.95 Aligned_cols=171 Identities=13% Similarity=0.185 Sum_probs=126.3
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhC--CCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~ 285 (390)
.+++.+ .+++.+|||||||+|.++..+++++ |+++++++|+ +.|++.|+++ .+|+++++|+.+ +++.
T Consensus 62 ~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~ 139 (261)
T 4gek_A 62 MLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN 139 (261)
T ss_dssp HHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCS
T ss_pred HHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccc
Confidence 344443 3577899999999999999999975 6789999998 8899988752 579999999988 6666
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhh-hc------------C
Q 016366 286 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT-RD------------G 352 (390)
Q Consensus 286 ~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~------------~ 352 (390)
.|+|++.+++|++++++..++|++++++|+|||++++.|.....++...... .....++.... .. .
T Consensus 140 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~ei~~~~~~l~~ 218 (261)
T 4gek_A 140 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELL-FNMHHDFKRANGYSELEISQKRSMLEN 218 (261)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHH-HHHHHHHHHHTTGGGSTTHHHHHHHHH
T ss_pred cccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhhcc
Confidence 6999999999999998888999999999999999999998876643211000 00000000000 00 0
Q ss_pred CCcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 353 GGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 353 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
--...+.+++.++|+++||+.++++..-.++..+.++|
T Consensus 219 ~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 219 VMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp HCCCBCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred cccCCCHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 01346889999999999999999876555555555665
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.83 E-value=2.2e-19 Score=162.01 Aligned_cols=174 Identities=15% Similarity=0.181 Sum_probs=130.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCCC-cE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG-DA 288 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~~-D~ 288 (390)
..++..++...+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++++|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 44455444334668999999999999999999999999999998 8888877652 489999999988 55544 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhh------------hhhhcCCCcc
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL------------LMTRDGGGRE 356 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~------------~~~~~~~g~~ 356 (390)
|++..++|++++++...+|++++++|+|||++++.+...++....... ....+.... ..........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 999999999999888889999999999999999999887653211000 000000000 0000013455
Q ss_pred cCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 357 RTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 357 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
++.+++.++|+++||+.+++......++++..+|
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence 7899999999999999999988887777766543
No 19
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.79 E-value=1.6e-19 Score=160.68 Aligned_cols=169 Identities=14% Similarity=0.218 Sum_probs=122.1
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~ 285 (390)
...+++.++ ..+. +|||||||+|.++..++++ |+.+++++|+ +.+++.+++. ++++++++|+.+ +++.
T Consensus 33 ~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 33 AENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 345555555 3444 9999999999999999998 7889999998 8888877753 579999999988 6665
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhh-hhhhhhhcCCCcccCHHHH
Q 016366 286 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL-DVLLMTRDGGGRERTKKEY 362 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~g~~~t~~e~ 362 (390)
. |+|++..++|++++.. .+|+++++.|+|||++++.+...+............... .+..... .....++.++|
T Consensus 110 ~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 186 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDVA--TAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNR-KNISQENVERF 186 (219)
T ss_dssp TCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHH-HHSSHHHHHHH
T ss_pred ccccEEEECchHhhccCHH--HHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhh-hccccCCHHHH
Confidence 4 9999999999997765 899999999999999999876543310000000000000 0000000 12334578999
Q ss_pred HHHHHHCCCCeeEEEecCCceeEEEEe
Q 016366 363 TELAIAAGFKGINFASCVCNLYIMEFF 389 (390)
Q Consensus 363 ~~ll~~aGf~~~~~~~~~~~~~vi~~~ 389 (390)
.++|+++||+++++.......+++..+
T Consensus 187 ~~~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 187 QNVLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHHHcCCCeEEEEecCCceEEEEec
Confidence 999999999999999888777765543
No 20
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.77 E-value=4.4e-18 Score=151.80 Aligned_cols=154 Identities=15% Similarity=0.158 Sum_probs=125.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~- 286 (390)
.+++.++ ..+..+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++. ++++++.+|+.+ +++..
T Consensus 28 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 106 (219)
T 3dh0_A 28 KVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNT 106 (219)
T ss_dssp HHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSC
T ss_pred HHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCC
Confidence 4555565 6677899999999999999999987 8889999998 8888887753 579999999987 66654
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
|+|++..++|++++.. .+|++++++|+|||++++.+.......... .....++.++|.++
T Consensus 107 fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~ 167 (219)
T 3dh0_A 107 VDFIFMAFTFHELSEPL--KFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGLI 167 (219)
T ss_dssp EEEEEEESCGGGCSSHH--HHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHHH
T ss_pred eeEEEeehhhhhcCCHH--HHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHHH
Confidence 9999999999998765 899999999999999999987655431110 01223589999999
Q ss_pred HHHCCCCeeEEEecCCceeEEEEeC
Q 016366 366 AIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 366 l~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
++++||+++++.........+.++|
T Consensus 168 l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 168 LEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHCCCEEEEEEeeCCceEEEEEEe
Confidence 9999999999998887777777665
No 21
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.76 E-value=1.5e-17 Score=148.40 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=121.0
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CCceEEECCCCC-CCCCC-cEEEe
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG-DAILM 291 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~-~~p~~-D~i~~ 291 (390)
.+++.+. ..+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 4445554 456789999999999999999987 568999998 8888887754 489999999988 66533 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhh---hhhh-hhhcCCCcccCHHHHHHHHH
Q 016366 292 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL---DVLL-MTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~---d~~~-~~~~~~g~~~t~~e~~~ll~ 367 (390)
.+++|++++++...+|++++++|+|||++++.++..+.... ........ .... .........++.++|.++|+
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 189 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDA---YDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFE 189 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHH---HHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHH---HHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHH
Confidence 99999999988777999999999999999999876544211 00000000 0000 00000123458999999999
Q ss_pred HCCCCeeEEEecCCceeEEEEeC
Q 016366 368 AAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 368 ~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
++||+++.+.. ....+++.+.|
T Consensus 190 ~aGf~v~~~~~-~~~~w~~~~~~ 211 (220)
T 3hnr_A 190 NNGFHVTFTRL-NHFVWVMEATK 211 (220)
T ss_dssp HTTEEEEEEEC-SSSEEEEEEEE
T ss_pred HCCCEEEEeec-cceEEEEeehh
Confidence 99998765544 46777776653
No 22
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.76 E-value=5.5e-18 Score=155.44 Aligned_cols=153 Identities=16% Similarity=0.298 Sum_probs=117.5
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~- 286 (390)
..+++.++ ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 27 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 103 (260)
T 1vl5_A 27 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 103 (260)
T ss_dssp HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCC
Confidence 45666666 56778999999999999999999876 7888998 8888887653 579999999988 77654
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhh-hhhcCCCcccCHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL-MTRDGGGRERTKKEYTE 364 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~g~~~t~~e~~~ 364 (390)
|+|++..++|++++.. .+|++++++|+|||++++.+...+..+ .. ..+..... .........++.++|.+
T Consensus 104 fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (260)
T 1vl5_A 104 FHIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPEND---AF---DVFYNYVEKERDYSHHRAWKKSDWLK 175 (260)
T ss_dssp EEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSSH---HH---HHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred EEEEEEhhhhHhcCCHH--HHHHHHHHHcCCCCEEEEEEcCCCCCH---HH---HHHHHHHHHhcCccccCCCCHHHHHH
Confidence 9999999999999876 899999999999999999988765531 11 11111111 11111345678999999
Q ss_pred HHHHCCCCeeEEEec
Q 016366 365 LAIAAGFKGINFASC 379 (390)
Q Consensus 365 ll~~aGf~~~~~~~~ 379 (390)
+|+++||+++++...
T Consensus 176 ~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 176 MLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHTCEEEEEEEE
T ss_pred HHHHCCCeEEEEEEe
Confidence 999999998877654
No 23
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.75 E-value=1.3e-17 Score=152.87 Aligned_cols=156 Identities=18% Similarity=0.307 Sum_probs=122.4
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCCC--
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG-- 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~~-- 286 (390)
...+++.++ ..+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 345566665 6677899999999999999999987 678999998 7888877754 689999999988 66654
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|+|++..++||+++++...+|++++++|+|||++++.+...+..... . ..+...... .+...++.++|.+++
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~----~~~~~~~~~--~~~~~~~~~~~~~~l 193 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENW--D----DEFKEYVKQ--RKYTLITVEEYADIL 193 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGC--C----HHHHHHHHH--HTCCCCCHHHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccc--h----HHHHHHHhc--CCCCCCCHHHHHHHH
Confidence 99999999999987778899999999999999999999876541111 0 011111111 134567999999999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||+++++....
T Consensus 194 ~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 194 TACNFKNVVSKDLS 207 (266)
T ss_dssp HHTTCEEEEEEECH
T ss_pred HHcCCeEEEEEeCC
Confidence 99999999887654
No 24
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.74 E-value=1.6e-17 Score=147.75 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=114.1
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CCceEEECCCCCCCCCC--cEEE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFESVPEG--DAIL 290 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~~~p~~--D~i~ 290 (390)
..+++.+....+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++++|+.+..+.+ |+|+
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 344555543556679999999999999999998 468899998 8888888763 67999999998864443 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCC-------CcccCHHHHH
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG-------GRERTKKEYT 363 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-------g~~~t~~e~~ 363 (390)
+.+++|+++++....+|+++++.|+|||++++.+...+.......... ........ ..+. ...++.++|.
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 189 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRR-TLQDGRSFRIVKVFRSPAELT 189 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEE-ECTTSCEEEEECCCCCHHHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceee-ecCCcchhhHhhcCCCHHHHH
Confidence 999999999987889999999999999999999887543211000000 00000000 0011 1245999999
Q ss_pred HHHHHCCCCeeEEEecC
Q 016366 364 ELAIAAGFKGINFASCV 380 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~~ 380 (390)
++++++||++.......
T Consensus 190 ~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 190 ERLTALGWSCSVDEVHP 206 (218)
T ss_dssp HHHHHTTEEEEEEEEET
T ss_pred HHHHHCCCEEEeeeccc
Confidence 99999999955444433
No 25
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.74 E-value=1.9e-18 Score=154.87 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=115.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~ 297 (390)
...+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++++|+.+ +++.+ |+|++..++|+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 468999999999999999999887 7888887 8888887753 689999999988 66643 99999999777
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcc--h-HHhhhhhhhhhhhh--------hc-C-------CCcccC
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS--S-AARETSLLDVLLMT--------RD-G-------GGRERT 358 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~--~-~~~~~~~~d~~~~~--------~~-~-------~g~~~t 358 (390)
+...+..++|++++++|+|||++++.++..+...... . ......+....+.. .+ . ....++
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 195 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG 195 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhhc
Confidence 7777778999999999999999999876532210000 0 00000000000000 00 0 011122
Q ss_pred HHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 359 KKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 359 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
.+|.++|+++||+.+++..+....++++.+|
T Consensus 196 -~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 196 -KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp -HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred -hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 4899999999999999999988888988875
No 26
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.74 E-value=2.6e-17 Score=151.87 Aligned_cols=157 Identities=15% Similarity=0.195 Sum_probs=121.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~ 285 (390)
...+++.++ ..+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 345666666 6678899999999999999999987 679999998 7788777642 479999999988 6665
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHH
Q 016366 286 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 363 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~ 363 (390)
+ |+|++..++||+++.. .+|++++++|+|||++++.+.......... . ....+..... ++.+..++.++|.
T Consensus 128 ~~fD~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~---~~~~~~~~~~-~~~~~~~~~~~~~ 200 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDRG--RALREMARVLRPGGTVAIADFVLLAPVEGA-K---KEAVDAFRAG-GGVLSLGGIDEYE 200 (273)
T ss_dssp TCEEEEEEESCTTTSSCHH--HHHHHHHTTEEEEEEEEEEEEEESSCCCHH-H---HHHHHHHHHH-HTCCCCCCHHHHH
T ss_pred CCccEEEEechhhhCCCHH--HHHHHHHHHcCCCeEEEEEEeeccCCCChh-H---HHHHHHHHhh-cCccCCCCHHHHH
Confidence 4 9999999999998865 899999999999999999998765422111 1 1111111111 2356778999999
Q ss_pred HHHHHCCCCeeEEEecC
Q 016366 364 ELAIAAGFKGINFASCV 380 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~~ 380 (390)
++++++||+++++...+
T Consensus 201 ~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 201 SDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHTTCEEEEEEECH
T ss_pred HHHHHcCCeEEEEEECc
Confidence 99999999999887764
No 27
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.74 E-value=4.4e-17 Score=147.67 Aligned_cols=163 Identities=15% Similarity=0.294 Sum_probs=120.3
Q ss_pred HHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC
Q 016366 203 YHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE 281 (390)
Q Consensus 203 ~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~ 281 (390)
|..............+...++.+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~ 92 (240)
T 3dli_A 17 FEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIE 92 (240)
T ss_dssp HHHHHTCCHHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHH
Confidence 3333333333344445455554566789999999999999999988 446889998 8889888865 9999999876
Q ss_pred ---CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcc
Q 016366 282 ---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 356 (390)
Q Consensus 282 ---~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 356 (390)
+++.+ |+|++.+++||+++++...+|++++++|+|||++++..+.... .. ...+.. ........
T Consensus 93 ~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~~----~~~~~~--~~~~~~~~ 161 (240)
T 3dli_A 93 YLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS-----LY----SLINFY--IDPTHKKP 161 (240)
T ss_dssp HHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS-----HH----HHHHHT--TSTTCCSC
T ss_pred HhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch-----hH----HHHHHh--cCcccccc
Confidence 55544 9999999999999887789999999999999999987765322 11 111111 11123456
Q ss_pred cCHHHHHHHHHHCCCCeeEEEecC
Q 016366 357 RTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 357 ~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
++.+++.++++++||+++++....
T Consensus 162 ~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 162 VHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp CCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred CCHHHHHHHHHHCCCeEEEEEEec
Confidence 789999999999999999887654
No 28
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.73 E-value=9.6e-18 Score=154.07 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=118.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCC-CCCCC-cEEEecc-ccccCCh
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-SVPEG-DAILMKW-ILHCWDD 300 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~-~~p~~-D~i~~~~-vlh~~~d 300 (390)
.+..+|||||||+|.++..++++.+ +++++|+ +.+++.+++ .++++++++|+.+ +.+.. |+|++.. ++|++++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 4568999999999999999999864 6788888 888888876 3689999999988 55544 9999998 9999974
Q ss_pred -hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHH--------------------hhhhhhhhhhhhhcCC------
Q 016366 301 -DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAA--------------------RETSLLDVLLMTRDGG------ 353 (390)
Q Consensus 301 -~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~--------------------~~~~~~d~~~~~~~~~------ 353 (390)
++..++|++++++|+|||+++|.+...++........ .....+++.+.....+
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 5677899999999999999998654433321100000 0000011111110011
Q ss_pred -----CcccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 354 -----GRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 354 -----g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
.+.++.++|.++|+++||+++++........+++++|
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2346899999999999999999987777777777765
No 29
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.73 E-value=3.2e-17 Score=152.54 Aligned_cols=162 Identities=18% Similarity=0.202 Sum_probs=121.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~- 286 (390)
..+++.++ ..+..+|||||||+|.++..++++++ .+++++|+ +.+++.+++. ++++++.+|+.+ +|..
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPV 130 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCC
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCCe
Confidence 45566665 66778999999999999999997765 48999998 7888877652 589999999965 3343
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCC-----cchHHhhhhhhhhhhhhhcCCCcccCHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE-----VSSAARETSLLDVLLMTRDGGGRERTKKE 361 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~g~~~t~~e 361 (390)
|+|++..++||+++++...+|++++++|+|||++++.+...+.... ...........+......++++..++.++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 210 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM 210 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHH
Confidence 9999999999997666679999999999999999999987654211 00000001111211122235778889999
Q ss_pred HHHHHHHCCCCeeEEEecC
Q 016366 362 YTELAIAAGFKGINFASCV 380 (390)
Q Consensus 362 ~~~ll~~aGf~~~~~~~~~ 380 (390)
+.++++++||+++++....
T Consensus 211 ~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 211 VQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHhCCcEEEEEEeCc
Confidence 9999999999999987654
No 30
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.73 E-value=4.7e-17 Score=147.46 Aligned_cols=153 Identities=18% Similarity=0.326 Sum_probs=117.5
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~- 286 (390)
..+++.+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 11 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 11 GLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred chHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 45566666 67889999999999999999999875 7888887 7888877652 679999999987 66643
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhh-hhhhcCCCcccCHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL-LMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~g~~~t~~e~~~ 364 (390)
|+|++.+++|++++.. .+|++++++|+|||++++.+...+..+ ... .+.... ..........++.++|.+
T Consensus 88 fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVDHYAPEDP---VLD---EFVNHLNRLRDPSHVRESSLSEWQA 159 (239)
T ss_dssp EEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECBCSSH---HHH---HHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred EEEEEECCchhhccCHH--HHHHHHHHHcCCCcEEEEEEcCCCCCh---hHH---HHHHHHHHhccccccCCCCHHHHHH
Confidence 9999999999998765 899999999999999999988765431 111 111111 111111345678999999
Q ss_pred HHHHCCCCeeEEEec
Q 016366 365 LAIAAGFKGINFASC 379 (390)
Q Consensus 365 ll~~aGf~~~~~~~~ 379 (390)
+|+++||+++++...
T Consensus 160 ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 160 MFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHCCCcEEEEEee
Confidence 999999998887654
No 31
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.72 E-value=5.6e-17 Score=151.64 Aligned_cols=155 Identities=17% Similarity=0.254 Sum_probs=119.2
Q ss_pred HHHHHHHh---hccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-C
Q 016366 215 MERILEHY---EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S 282 (390)
Q Consensus 215 ~~~l~~~~---~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~ 282 (390)
...+++.+ +.+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +
T Consensus 67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 34566666 126678899999999999999999986 468999998 7888877652 579999999988 7
Q ss_pred CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHH
Q 016366 283 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 360 (390)
Q Consensus 283 ~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~ 360 (390)
++.+ |+|++..++||+++. ..+|++++++|+|||++++.++..++...... ...... ... .....+.+
T Consensus 146 ~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---~~~~~~---~~~--~~~~~~~~ 215 (297)
T 2o57_A 146 CEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKSS---IQPILD---RIK--LHDMGSLG 215 (297)
T ss_dssp SCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGG---GHHHHH---HHT--CSSCCCHH
T ss_pred CCCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCchHH---HHHHHH---Hhc--CCCCCCHH
Confidence 6654 999999999999984 48999999999999999999987655322111 111111 111 23356899
Q ss_pred HHHHHHHHCCCCeeEEEecC
Q 016366 361 EYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 361 e~~~ll~~aGf~~~~~~~~~ 380 (390)
+|.++++++||+++++....
T Consensus 216 ~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 216 LYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HHHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHHHCCCeEEEEEECc
Confidence 99999999999999887653
No 32
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.72 E-value=1.4e-17 Score=151.79 Aligned_cols=149 Identities=17% Similarity=0.287 Sum_probs=117.3
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCCC--c
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 287 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~~--D 287 (390)
..+++.++ ..+..+|||||||+|.++..++++. ..+++++|+ +.+++.+++. ++++++++|+.+ +++.+ |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 45555555 5567899999999999999999886 457889997 7888877653 579999999987 66543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
+|++.+++|++++++..++|++++++|+|||++++.+........ ..+ .......++.++|.++|+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVD-----KEDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEE-----TTTTEEEBCHHHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eec-----ccCCcccCCHHHHHHHHH
Confidence 999999999999888889999999999999999999875443210 000 011334578999999999
Q ss_pred HCCCCeeEEEecC
Q 016366 368 AAGFKGINFASCV 380 (390)
Q Consensus 368 ~aGf~~~~~~~~~ 380 (390)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999987664
No 33
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.72 E-value=1.2e-16 Score=149.91 Aligned_cols=163 Identities=17% Similarity=0.260 Sum_probs=123.7
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~- 286 (390)
..+++.++ ..+..+|||||||+|.++..++++++ .+++++|+ +.+++.+++. ++++++.+|+.+. +..
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~f 138 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPV 138 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCC
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCc
Confidence 45666665 67778999999999999999999976 78999998 8888887752 3799999999754 444
Q ss_pred cEEEeccccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchH-----HhhhhhhhhhhhhhcCCC
Q 016366 287 DAILMKWILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSA-----ARETSLLDVLLMTRDGGG 354 (390)
Q Consensus 287 D~i~~~~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~g 354 (390)
|+|++..++|++++ +....+|++++++|+|||++++.+...++....... .....+.++.....++++
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 218 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 218 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC
Confidence 99999999999955 556799999999999999999998876542100000 000001122222234577
Q ss_pred cccCHHHHHHHHHHCCCCeeEEEecCC
Q 016366 355 RERTKKEYTELAIAAGFKGINFASCVC 381 (390)
Q Consensus 355 ~~~t~~e~~~ll~~aGf~~~~~~~~~~ 381 (390)
..++.+++.++++++||+++++.....
T Consensus 219 ~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 219 RLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 889999999999999999999887653
No 34
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.71 E-value=6e-17 Score=147.93 Aligned_cols=153 Identities=10% Similarity=0.060 Sum_probs=117.1
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~ 285 (390)
...+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++++|+.+ +.+.
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 345666665 6677899999999999999999987 568899998 8888877652 479999999988 4433
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 286 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
. |+|++..++|++++.. ++|++++++|+|||++++.++.....+..... ... ... ......++.++|.+
T Consensus 103 ~fD~V~~~~~~~~~~~~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~------~~~-~~~-~~~~~~~~~~~~~~ 172 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGFA--GAEELLAQSLKPGGIMLIGEPYWRQLPATEEI------AQA-CGV-SSTSDFLTLPGLVG 172 (256)
T ss_dssp CEEEEEEESCGGGTSSSH--HHHHHHTTSEEEEEEEEEEEEEETTCCSSHHH------HHT-TTC-SCGGGSCCHHHHHH
T ss_pred CCCEEEECCChHhcCCHH--HHHHHHHHHcCCCeEEEEecCcccCCCChHHH------HHH-Hhc-ccccccCCHHHHHH
Confidence 3 9999999999998755 89999999999999999998876543221110 000 000 01224678999999
Q ss_pred HHHHCCCCeeEEEec
Q 016366 365 LAIAAGFKGINFASC 379 (390)
Q Consensus 365 ll~~aGf~~~~~~~~ 379 (390)
+++++||+++++...
T Consensus 173 ~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 173 AFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHCCCeeEEEEeC
Confidence 999999999887654
No 35
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.71 E-value=2.1e-16 Score=145.18 Aligned_cols=153 Identities=10% Similarity=0.132 Sum_probs=116.7
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEE
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAIL 290 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~ 290 (390)
...+++.++ ..+..+|||||||+|.++..+++ +..+++++|+ +.+++.+++..+++++.+|+.+ +++.+ |+|+
T Consensus 23 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 23 VNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 345666665 56788999999999999999997 6789999998 8899999988899999999988 66643 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
+.+++|++++.. ++|++++++|+ ||++++.+...+.... .+.. ..+...... . ....++.+++. +|+++|
T Consensus 100 ~~~~l~~~~~~~--~~l~~~~~~Lk-gG~~~~~~~~~~~~~~-~~~~---~~~~~~~~~-~-~~~~~~~~~~~-~l~~aG 169 (261)
T 3ege_A 100 SILAIHHFSHLE--KSFQEMQRIIR-DGTIVLLTFDIRLAQR-IWLY---DYFPFLWED-A-LRFLPLDEQIN-LLQENT 169 (261)
T ss_dssp EESCGGGCSSHH--HHHHHHHHHBC-SSCEEEEEECGGGCCC-CGGG---GTCHHHHHH-H-HTSCCHHHHHH-HHHHHH
T ss_pred EcchHhhccCHH--HHHHHHHHHhC-CcEEEEEEcCCchhHH-HHHH---HHHHHHhhh-h-hhhCCCHHHHH-HHHHcC
Confidence 999999998765 89999999999 9999998875433211 1110 111100111 1 23445678889 999999
Q ss_pred CCeeEEEecC
Q 016366 371 FKGINFASCV 380 (390)
Q Consensus 371 f~~~~~~~~~ 380 (390)
|+.+++....
T Consensus 170 F~~v~~~~~~ 179 (261)
T 3ege_A 170 KRRVEAIPFL 179 (261)
T ss_dssp CSEEEEEECC
T ss_pred CCceeEEEec
Confidence 9999887663
No 36
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.71 E-value=5.1e-17 Score=146.64 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=117.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC-cEEEe-ccccccCCh
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILM-KWILHCWDD 300 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~-D~i~~-~~vlh~~~d 300 (390)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|++ ..++|++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4568999999999999999999876 7888888 8888888764 689999999987 55444 99995 559999864
Q ss_pred -hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHh--------------------hhhhhhhhhhhhcCCC-----
Q 016366 301 -DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR--------------------ETSLLDVLLMTRDGGG----- 354 (390)
Q Consensus 301 -~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~--------------------~~~~~d~~~~~~~~~g----- 354 (390)
++..++|++++++|+|||++++.+...++......... ......+.++....++
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 56789999999999999999987665543211000000 0000011111100011
Q ss_pred ------cccCHHHHHHHHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 355 ------RERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 355 ------~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
+.+|.++|+++|+++||+++.+....+...+++++|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 356999999999999998877766666777888775
No 37
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.70 E-value=1.3e-16 Score=145.83 Aligned_cols=152 Identities=13% Similarity=0.094 Sum_probs=116.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~ 286 (390)
..++..+....+..+|||||||+|.++..+++.++. +++++|+ +.+++.+++. ++++++++|+.+ +++.+
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 345555544567789999999999999999999985 8999998 7788877652 469999999987 66643
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
|+|++..++|++ +. .++|++++++|+|||++++.+........... ..+.... . ....++.++|.+
T Consensus 114 ~fD~v~~~~~l~~~-~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~-~--~~~~~~~~~~~~ 181 (257)
T 3f4k_A 114 ELDLIWSEGAIYNI-GF--ERGMNEWSKYLKKGGFIAVSEASWFTSERPAE------IEDFWMD-A--YPEISVIPTCID 181 (257)
T ss_dssp CEEEEEEESCSCCC-CH--HHHHHHHHTTEEEEEEEEEEEEEESSSCCCHH------HHHHHHH-H--CTTCCBHHHHHH
T ss_pred CEEEEEecChHhhc-CH--HHHHHHHHHHcCCCcEEEEEEeeccCCCChHH------HHHHHHH-h--CCCCCCHHHHHH
Confidence 999999999998 33 48999999999999999999976433221111 1111111 1 133568999999
Q ss_pred HHHHCCCCeeEEEecC
Q 016366 365 LAIAAGFKGINFASCV 380 (390)
Q Consensus 365 ll~~aGf~~~~~~~~~ 380 (390)
+++++||+++++...+
T Consensus 182 ~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 182 KMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHTTEEEEEEEECC
T ss_pred HHHHCCCeEEEEEECC
Confidence 9999999999987775
No 38
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.70 E-value=1.3e-16 Score=150.48 Aligned_cols=163 Identities=12% Similarity=0.108 Sum_probs=122.1
Q ss_pred HhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECC
Q 016366 207 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGN 278 (390)
Q Consensus 207 m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd 278 (390)
+..........+++.++.+.+..+|||||||+|.++..+++++ +.+++++|+ +.+++.++++ ++++++.+|
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 175 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 4444444445566666545677899999999999999999985 578999998 8888877752 479999999
Q ss_pred CCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCc
Q 016366 279 MFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR 355 (390)
Q Consensus 279 ~~~-~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~ 355 (390)
+.+ +++.+ |+|++..++|+++ ..++|++++++|+|||++++.+....+...... .......... ...
T Consensus 176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~ 245 (312)
T 3vc1_A 176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-----KWVSQINAHF--ECN 245 (312)
T ss_dssp TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-----HHHHHHHHHH--TCC
T ss_pred hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-----HHHHHHHhhh--cCC
Confidence 988 66644 9999999999994 558999999999999999999987665321110 0111111111 123
Q ss_pred ccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 356 ERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 356 ~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.++.++|.++++++||+++++..+.
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 6789999999999999999987754
No 39
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.70 E-value=1.1e-16 Score=147.48 Aligned_cols=151 Identities=13% Similarity=0.062 Sum_probs=116.8
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~- 286 (390)
.++..++.+.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 44444443567789999999999999999998 7889999998 8888877652 579999999987 66544
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
|+|++..++|++ +. ..+|++++++|+|||++++.+........... ..+.... . ....++.+++.++
T Consensus 115 fD~i~~~~~~~~~-~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~-~--~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 115 LDLIWSEGAIYNI-GF--ERGLNEWRKYLKKGGYLAVSECSWFTDERPAE------INDFWMD-A--YPEIDTIPNQVAK 182 (267)
T ss_dssp EEEEEESSCGGGT-CH--HHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH------HHHHHHH-H--CTTCEEHHHHHHH
T ss_pred EEEEEEcCCceec-CH--HHHHHHHHHHcCCCCEEEEEEeeecCCCChHH------HHHHHHH-h--CCCCCCHHHHHHH
Confidence 999999999999 43 48999999999999999999986543322111 1111111 1 2345789999999
Q ss_pred HHHCCCCeeEEEecC
Q 016366 366 AIAAGFKGINFASCV 380 (390)
Q Consensus 366 l~~aGf~~~~~~~~~ 380 (390)
++++||+++++..++
T Consensus 183 l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 183 IHKAGYLPVATFILP 197 (267)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCEEEEEEECC
Confidence 999999999988776
No 40
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.70 E-value=7.6e-17 Score=146.11 Aligned_cols=153 Identities=12% Similarity=0.165 Sum_probs=110.5
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-C-CceEEECCCCCCCCC-C-cEEEec
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-A-GVEHVGGNMFESVPE-G-DAILMK 292 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~-rv~~~~gd~~~~~p~-~-D~i~~~ 292 (390)
+++.+....+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++. . +++++++|+.+..+. . |+|++.
T Consensus 33 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 110 (250)
T 2p7i_A 33 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLT 110 (250)
T ss_dssp HHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEE
T ss_pred HHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEh
Confidence 333333234567899999999999999999887 5677777 7888887753 2 899999999875343 3 999999
Q ss_pred cccccCChhHHHHHHHHHH-HhCCCCcEEEEEecccCCCCCcchHHhhhhhhhh-------h-hhhhcCCCcccCHHHHH
Q 016366 293 WILHCWDDDHCLRILKNCY-KAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDV-------L-LMTRDGGGRERTKKEYT 363 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~-~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~-------~-~~~~~~~g~~~t~~e~~ 363 (390)
+++||+++.. ++|++++ ++|+|||++++.++..... .......... . ..........++.+++.
T Consensus 111 ~~l~~~~~~~--~~l~~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (250)
T 2p7i_A 111 HVLEHIDDPV--ALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLE 183 (250)
T ss_dssp SCGGGCSSHH--HHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHH
T ss_pred hHHHhhcCHH--HHHHHHHHHhcCCCCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccccccccccCCHHHHH
Confidence 9999998875 8999999 9999999999987643221 0000000000 0 00011234567999999
Q ss_pred HHHHHCCCCeeEEEec
Q 016366 364 ELAIAAGFKGINFASC 379 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~ 379 (390)
++|+++||+++++...
T Consensus 184 ~~l~~~Gf~~~~~~~~ 199 (250)
T 2p7i_A 184 RDASRAGLQVTYRSGI 199 (250)
T ss_dssp HHHHHTTCEEEEEEEE
T ss_pred HHHHHCCCeEEEEeee
Confidence 9999999999988643
No 41
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.70 E-value=2e-16 Score=149.51 Aligned_cols=163 Identities=16% Similarity=0.274 Sum_probs=121.5
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~ 286 (390)
...+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +|..
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 155 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP 155 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCC
Confidence 345566665 6677899999999999999999986 568999998 7888877652 569999999865 2343
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcc----hHH-hhhhhhhhhhhhhcCCCcccCHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS----SAA-RETSLLDVLLMTRDGGGRERTKK 360 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~----~~~-~~~~~~d~~~~~~~~~g~~~t~~ 360 (390)
|+|++..++|++++++..++|++++++|+|||++++.+...+...... ... ......+......++++..++.+
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 235 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE 235 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHH
Confidence 999999999999877777999999999999999999998765421000 000 00011122111223567788999
Q ss_pred HHHHHHHHCCCCeeEEEecC
Q 016366 361 EYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 361 e~~~ll~~aGf~~~~~~~~~ 380 (390)
++.++++++||+++++....
T Consensus 236 ~~~~~l~~aGf~~~~~~~~~ 255 (318)
T 2fk8_A 236 MMVEHGEKAGFTVPEPLSLR 255 (318)
T ss_dssp HHHHHHHHTTCBCCCCEECH
T ss_pred HHHHHHHhCCCEEEEEEecc
Confidence 99999999999999877653
No 42
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.70 E-value=5.4e-17 Score=150.06 Aligned_cols=150 Identities=18% Similarity=0.330 Sum_probs=115.2
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC--cEEEeccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKWI 294 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~--D~i~~~~v 294 (390)
+.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56778999999999999999999999999999998 7888877652 579999999987 66544 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCC---CCcchHH-hhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI---PEVSSAA-RETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~---~~~~~~~-~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
+|++++.. .+|++++++|+|||++++.+...... +...... ....... .... .++..++..++.++|+++|
T Consensus 115 l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~~~l~~aG 189 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIR--VQAY-MKGNSLVGRQIYPLLQESG 189 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHH--HHHH-TTCCTTGGGGHHHHHHHTT
T ss_pred hhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHH--HHHh-cCCCcchHHHHHHHHHHCC
Confidence 99999876 89999999999999999988643221 1111111 1111111 1111 2556677899999999999
Q ss_pred CCeeEEEec
Q 016366 371 FKGINFASC 379 (390)
Q Consensus 371 f~~~~~~~~ 379 (390)
|+++++...
T Consensus 190 f~~v~~~~~ 198 (276)
T 3mgg_A 190 FEKIRVEPR 198 (276)
T ss_dssp CEEEEEEEE
T ss_pred CCeEEEeeE
Confidence 999988754
No 43
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.69 E-value=4.5e-17 Score=143.53 Aligned_cols=138 Identities=16% Similarity=0.074 Sum_probs=111.8
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCC-CCCCC--cEEEeccccccCChhH
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 302 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~ 302 (390)
..+|||||||+|.++..++++ +.+++++|+ +.+++.+++ .++++++++|+.+ +++.+ |+|++.+++|+++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 689999999999999999988 457899998 888888876 4789999999988 66543 9999999999998667
Q ss_pred HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecCC
Q 016366 303 CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVC 381 (390)
Q Consensus 303 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 381 (390)
...+|++++++|+|||++++.+...+... .+.. . ......++.++|.++|+++||+++++...+.
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~----------~~~~--~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE----------PMYH--P--VATAYRWPLPELAQALETAGFQVTSSHWDPR 184 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCE----------EECC--S--SSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchh----------hhhc--h--hhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence 78999999999999999999886543310 0000 0 0123457899999999999999999987764
No 44
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.69 E-value=1.2e-16 Score=150.16 Aligned_cols=166 Identities=16% Similarity=0.166 Sum_probs=119.2
Q ss_pred cCCcceEEEEcCCccHHHHHHH-hhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC-cEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~-~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~ 293 (390)
+.+..+|||||||+|.++..++ ...|+.+++++|+ +.+++.++++ ++++++++|+.+ +++.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4577899999999999999996 6789999999998 8888877752 359999999988 66644 9999999
Q ss_pred ccccCChhH-HHHHHHHHHHhCCCCcEEEEEecccCCCCCcch--H----Hhhh-hhhhhhhhhhcCC--CcccCHHHHH
Q 016366 294 ILHCWDDDH-CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS--A----ARET-SLLDVLLMTRDGG--GRERTKKEYT 363 (390)
Q Consensus 294 vlh~~~d~~-~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~--~----~~~~-~~~d~~~~~~~~~--g~~~t~~e~~ 363 (390)
++|++++.. ..++|++++++|+|||++++.+...+....... . .... ......+...... ...++.+++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 999997554 446899999999999999998876543221100 0 0000 0000001111111 1347999999
Q ss_pred HHHHHCCCCeeEEEecC-CceeEEEEeC
Q 016366 364 ELAIAAGFKGINFASCV-CNLYIMEFFK 390 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~~-~~~~vi~~~k 390 (390)
++|+++||+++++.... .....+.++|
T Consensus 276 ~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 276 AQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 99999999999998755 3444555554
No 45
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.69 E-value=5.2e-16 Score=140.34 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=110.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCCC--cEEEeccccccC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKWILHCW 298 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~ 298 (390)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +++.. |+|++.+++||+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 36679999999999999999998 457889998 8888888764 689999999988 66544 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 378 (390)
++.. .+|++++++|+|||++++.+......... ...... . ........++.+++.++++++||++++...
T Consensus 130 ~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~~~~~~----~-~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 130 EEPL--RALNEIKRVLKSDGYACIAILGPTAKPRE---NSYPRL----Y-GKDVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SCHH--HHHHHHHHHEEEEEEEEEEEECTTCGGGG---GGGGGG----G-TCCCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCHH--HHHHHHHHHhCCCeEEEEEEcCCcchhhh---hhhhhh----c-cccccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 8765 88999999999999999988654332111 000111 1 011133457899999999999999999875
Q ss_pred c
Q 016366 379 C 379 (390)
Q Consensus 379 ~ 379 (390)
+
T Consensus 200 ~ 200 (242)
T 3l8d_A 200 V 200 (242)
T ss_dssp E
T ss_pred c
Confidence 4
No 46
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.69 E-value=8.4e-17 Score=137.69 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=116.7
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCCCCCCC--cEEEecc
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFESVPEG--DAILMKW 293 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~~~p~~--D~i~~~~ 293 (390)
+++.++ ..+..+|||||||+|.++..+++... +++++|+ +.+++.+++ .++++++.+| .+++.+ |+|++..
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 444555 66778999999999999999999874 8899998 888888776 5789999999 444443 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCe
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 373 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 373 (390)
++|++++.. .+|+++++.|+|||++++.+.......... +....++.++|+++++ ||++
T Consensus 84 ~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~ 142 (170)
T 3i9f_A 84 SFHDMDDKQ--HVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVV 142 (170)
T ss_dssp CSTTCSCHH--HHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEE
T ss_pred chhcccCHH--HHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEE
Confidence 999998765 899999999999999999987755432110 0122368999999998 9999
Q ss_pred eEEEecCCceeEEEEe
Q 016366 374 INFASCVCNLYIMEFF 389 (390)
Q Consensus 374 ~~~~~~~~~~~vi~~~ 389 (390)
+++.........+.++
T Consensus 143 ~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 143 EKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEECSSTTEEEEEEE
T ss_pred EEccCCCCceEEEEEe
Confidence 9999998777666654
No 47
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.68 E-value=5.7e-17 Score=146.97 Aligned_cols=138 Identities=17% Similarity=0.259 Sum_probs=112.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC--cEEEeccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKWILH 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~--D~i~~~~vlh 296 (390)
+..+|||||||+|.++..++++. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999999887 568899998 8888877653 258899999877 55543 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEE
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 376 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 376 (390)
+++++....+|++++++|+|||++++.++..+.. . .++ .......++.++|.++|+++||+++++
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~--------~~~-----~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG--V--------ILD-----DVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS--E--------EEE-----TTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc--c--------eec-----ccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9999888899999999999999999999876541 0 000 011334568999999999999999998
Q ss_pred EecC
Q 016366 377 ASCV 380 (390)
Q Consensus 377 ~~~~ 380 (390)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7664
No 48
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.68 E-value=5.6e-16 Score=143.37 Aligned_cols=151 Identities=17% Similarity=0.246 Sum_probs=113.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCc---cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCCC-----
Q 016366 216 ERILEHYEGFQNVERLVDVGGGF---GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFES----- 282 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~---G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~~----- 282 (390)
..+++.+....+..+|||||||+ |.++..+.+.+|+.+++++|+ |.|++.+++. ++++++++|+.++
T Consensus 66 ~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~ 145 (274)
T 2qe6_A 66 VRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILN 145 (274)
T ss_dssp HHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhc
Confidence 34444443123457999999999 999888888899999999999 8899988753 6899999999762
Q ss_pred -------CC--CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCC
Q 016366 283 -------VP--EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 353 (390)
Q Consensus 283 -------~p--~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 353 (390)
++ ..|+|++..+||++++++...+|++++++|+|||+|++.+...+. + ... ....+....... .
T Consensus 146 ~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~-~--~~~---~~~~~~~~~~~~-~ 218 (274)
T 2qe6_A 146 HPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG-L--PAQ---QKLARITRENLG-E 218 (274)
T ss_dssp SHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS-C--HHH---HHHHHHHHHHHS-C
T ss_pred cchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc-h--HHH---HHHHHHHHhcCC-C
Confidence 22 239999999999999877789999999999999999999987532 1 111 112222221112 4
Q ss_pred CcccCHHHHHHHHHHCCCCeeE
Q 016366 354 GRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 354 g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
...++.+++.++| .||++++
T Consensus 219 ~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 219 GWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp CCCBCHHHHHHTT--TTCEECT
T ss_pred CccCCHHHHHHHh--CCCeEcc
Confidence 5678999999999 6998775
No 49
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.68 E-value=2.1e-16 Score=146.98 Aligned_cols=161 Identities=16% Similarity=0.192 Sum_probs=116.3
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~- 286 (390)
..+++.+....+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++++++|+.+ +.+..
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 90 (284)
T 3gu3_A 11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY 90 (284)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCe
Confidence 344555543567889999999999999999999985 89999998 7788777652 379999999998 55554
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc-----C---CCCCcchHHhhhhhhhhhh--hhhcCCCcc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV-----P---EIPEVSSAARETSLLDVLL--MTRDGGGRE 356 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~-----~---~~~~~~~~~~~~~~~d~~~--~~~~~~g~~ 356 (390)
|+|++..++|++++.. ++|+++++.|+|||++++.++.. . ++...........+..+.. ... .+...
T Consensus 91 D~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 167 (284)
T 3gu3_A 91 DIAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQR-NGKDG 167 (284)
T ss_dssp EEEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHH-TCCCT
T ss_pred eEEEECChhhcCCCHH--HHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhh-hcccc
Confidence 9999999999998875 89999999999999999988761 1 1110000000111111111 111 13445
Q ss_pred cCHHHHHHHHHHCCCCeeEEEec
Q 016366 357 RTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 357 ~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
.+.+++.++|+++||+.+++...
T Consensus 168 ~~~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 168 NIGMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp TGGGTHHHHHHHTTCEEEEEEEC
T ss_pred cHHHHHHHHHHHcCCCeEEEEEc
Confidence 56788999999999999877543
No 50
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.68 E-value=1e-16 Score=141.74 Aligned_cols=142 Identities=11% Similarity=0.087 Sum_probs=108.1
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------------------CCceEEEC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------------AGVEHVGG 277 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------------------~rv~~~~g 277 (390)
.++..+. .....+|||+|||+|..+..++++ ..+++++|+ +.|++.+++. .+++++++
T Consensus 13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 3344444 556789999999999999999997 458999998 8888877642 57999999
Q ss_pred CCCC-CCCC--C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCC
Q 016366 278 NMFE-SVPE--G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 353 (390)
Q Consensus 278 d~~~-~~p~--~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 353 (390)
|+++ +.+. . |+|++..++|++++++..+++++++++|||||+++++....+... . ...
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~---------------~---~~~ 151 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL---------------L---EGP 151 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS---------------S---SSC
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc---------------c---CCC
Confidence 9998 5442 3 999999999999988888899999999999999555544332210 0 001
Q ss_pred CcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 354 GRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 354 g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
....+.+++.+++++ ||++..+....
T Consensus 152 ~~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 152 PFSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp CCCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred CCCCCHHHHHHHhcC-CcEEEEecccc
Confidence 112579999999998 99988776654
No 51
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.68 E-value=1.7e-16 Score=148.57 Aligned_cols=175 Identities=10% Similarity=0.120 Sum_probs=116.0
Q ss_pred HHHHHHhhc-cHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---------C
Q 016366 202 TYHEAMFNH-STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------A 270 (390)
Q Consensus 202 ~~~~~m~~~-~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---------~ 270 (390)
.|...+... .......+++.++ . ...+|||||||+|.++..++++ ..+++++|+ +.+++.+++. .
T Consensus 58 ~y~~~~~~~~~~~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~ 133 (299)
T 3g2m_A 58 TYRDLIQDADGTSEAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRD 133 (299)
T ss_dssp --------CCCHHHHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHT
T ss_pred HHHHHhcccCccHHHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhccccccc
Confidence 344444432 3344556666665 2 3459999999999999999998 457888888 8888888753 5
Q ss_pred CceEEECCCCC-CCCCC-cEEEec-cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCC---CcchHH---hhhh
Q 016366 271 GVEHVGGNMFE-SVPEG-DAILMK-WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP---EVSSAA---RETS 341 (390)
Q Consensus 271 rv~~~~gd~~~-~~p~~-D~i~~~-~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~---~~~~~~---~~~~ 341 (390)
+++++++|+.+ +.+.. |+|++. .++|++++++..++|++++++|+|||+|++.....+... ...... ....
T Consensus 134 ~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 213 (299)
T 3g2m_A 134 RCTLVQGDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGR 213 (299)
T ss_dssp TEEEEECBTTBCCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC----------
T ss_pred ceEEEeCchhcCCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCc
Confidence 79999999998 66554 988865 778888877788999999999999999998776543210 000000 0000
Q ss_pred hh-------------hhhhhh----------hcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 342 LL-------------DVLLMT----------RDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 342 ~~-------------d~~~~~----------~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.. .+.+.. .....+.++.++|.++|+++||+++++.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 214 RYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp ---CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred EEEEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 00 000000 0001124699999999999999999998876
No 52
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.68 E-value=3.3e-16 Score=139.72 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=107.8
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----------CCceEEECCCCC-CC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SV 283 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----------~rv~~~~gd~~~-~~ 283 (390)
.+.+.+. ..+..+|||||||+|.++..++++.|..+++++|+ +.+++.+++. ++++++.+|+.. +.
T Consensus 20 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (219)
T 3jwg_A 20 TVVAVLK-SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK 98 (219)
T ss_dssp HHHHHHH-HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred HHHHHHh-hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence 3444444 34568999999999999999999999899999998 8888887753 289999999966 44
Q ss_pred CC--CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHH
Q 016366 284 PE--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 361 (390)
Q Consensus 284 p~--~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e 361 (390)
+. .|+|++..++|++++++..++|+++++.|+|||.+++........... ......+. .......++.++
T Consensus 99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~ 170 (219)
T 3jwg_A 99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYG-------NLFEGNLR-HRDHRFEWTRKE 170 (219)
T ss_dssp GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCC-------CT-----G-GGCCTTSBCHHH
T ss_pred ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhc-------ccCccccc-ccCceeeecHHH
Confidence 33 399999999999999888899999999999999666544321110000 00000001 111234468889
Q ss_pred HH----HHHHHCCCCeeEE
Q 016366 362 YT----ELAIAAGFKGINF 376 (390)
Q Consensus 362 ~~----~ll~~aGf~~~~~ 376 (390)
++ ++++++||++...
T Consensus 171 l~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 171 FQTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHCCcEEEEE
Confidence 88 8889999976443
No 53
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.67 E-value=3.4e-16 Score=139.45 Aligned_cols=150 Identities=12% Similarity=0.105 Sum_probs=107.3
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----------CCceEEECCCCC-CC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SV 283 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----------~rv~~~~gd~~~-~~ 283 (390)
.+.+.++ ..+..+|||||||+|.++..+++++|..+++++|+ +.+++.+++. ++++++++|+.. +.
T Consensus 20 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (217)
T 3jwh_A 20 GVVAALK-QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK 98 (217)
T ss_dssp HHHHHHH-HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG
T ss_pred HHHHHHH-hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc
Confidence 3444444 45668999999999999999999998889999998 8888877653 279999999865 44
Q ss_pred CC-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHH
Q 016366 284 PE-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 361 (390)
Q Consensus 284 p~-~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e 361 (390)
+. . |+|++..++|++++++..++|+++++.|+|||.+++....... ..+ ..+....+........++.++
T Consensus 99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~ 170 (217)
T 3jwh_A 99 RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYN-------VKF-ANLPAGKLRHKDHRFEWTRSQ 170 (217)
T ss_dssp GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHH-------HHT-C-----------CCSCBCHHH
T ss_pred cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccc-------hhh-cccccccccccccccccCHHH
Confidence 32 3 9999999999999988889999999999999977665442100 000 000000011111234468999
Q ss_pred HH----HHHHHCCCCeeE
Q 016366 362 YT----ELAIAAGFKGIN 375 (390)
Q Consensus 362 ~~----~ll~~aGf~~~~ 375 (390)
+. ++++++||++..
T Consensus 171 l~~~~~~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 171 FQNWANKITERFAYNVQF 188 (217)
T ss_dssp HHHHHHHHHHHSSEEEEE
T ss_pred HHHHHHHHHHHcCceEEE
Confidence 98 889999998643
No 54
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.67 E-value=3.3e-16 Score=151.96 Aligned_cols=144 Identities=17% Similarity=0.283 Sum_probs=113.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC--------------CCceEEECCCCC-------C
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFE-------S 282 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~--------------~rv~~~~gd~~~-------~ 282 (390)
.+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.++++ ++++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 456899999999999999999986 7889999998 8888887754 689999999987 4
Q ss_pred CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHH
Q 016366 283 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 360 (390)
Q Consensus 283 ~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~ 360 (390)
++.+ |+|++..++|++++.. .+|++++++|+|||++++.+...+..... .. ..+...... ..+..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~-----~~~~~~~~~-~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKL--ALFKEIHRVLRDGGELYFSDVYADRRLSE-AA-----QQDPILYGE-CLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEESSCCCH-HH-----HHCHHHHHT-TCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCCHH--HHHHHHHHHcCCCCEEEEEEeccccccCH-hH-----hhhHHHhhc-ccccCCCHH
Confidence 5543 9999999999998865 89999999999999999998775542111 11 111111221 244567899
Q ss_pred HHHHHHHHCCCCeeEEEe
Q 016366 361 EYTELAIAAGFKGINFAS 378 (390)
Q Consensus 361 e~~~ll~~aGf~~~~~~~ 378 (390)
+|.++|+++||+++++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999887654
No 55
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.67 E-value=2.1e-16 Score=140.17 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=110.2
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC-cEEEeccccccCChh
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG-DAILMKWILHCWDDD 301 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~ 301 (390)
+.+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++..+++++.+|+.+ +.+.. |+|++.+++|+++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 446789999999999999999987 458899998 8888888876678999999987 52233 999999999999988
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC-CCeeEEEecC
Q 016366 302 HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG-FKGINFASCV 380 (390)
Q Consensus 302 ~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG-f~~~~~~~~~ 380 (390)
+...+|++++++|+|||++++........... .. ......++.++|.++|+++| |+++++....
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~-------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~ 183 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRD--------KL-------ARYYNYPSEEWLRARYAEAGTWASVAVESSE 183 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC--------TT-------SCEECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCccccc--------cc-------chhccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence 88899999999999999999876543321100 00 00123468999999999999 9999887553
No 56
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.67 E-value=6.9e-16 Score=142.44 Aligned_cols=162 Identities=10% Similarity=0.071 Sum_probs=115.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hH------HHhhCCCC-------CCceEEECC-C
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH------VVQDAPSY-------AGVEHVGGN-M 279 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~------~~~~a~~~-------~rv~~~~gd-~ 279 (390)
..+++.++ ..+..+|||||||+|.++..+++++ |+.+++++|+ +. +++.++++ ++++++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 35566666 6677899999999999999999985 7789999998 43 67766642 579999998 5
Q ss_pred CC---CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc---
Q 016366 280 FE---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD--- 351 (390)
Q Consensus 280 ~~---~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~--- 351 (390)
.. +++.+ |+|++..++|++++.. .+++.++++++|||++++.+...+..................+....
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD 189 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence 43 33433 9999999999999876 57888888888899999999877554221111000001110111000
Q ss_pred --CCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 352 --GGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 352 --~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.....++.+++.++++++||+++++..+.
T Consensus 190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~ 220 (275)
T 3bkx_A 190 VANIRTLITPDTLAQIAHDNTWTYTAGTIVE 220 (275)
T ss_dssp TCSCCCCCCHHHHHHHHHHHTCEEEECCCBC
T ss_pred cccccccCCHHHHHHHHHHCCCeeEEEEEec
Confidence 01246799999999999999998877653
No 57
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.66 E-value=3.1e-16 Score=141.83 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=110.4
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCCC--cEE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAI 289 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~~--D~i 289 (390)
.+...++ ..+..+|||||||+|.++..+++... .+++++|+ +.+++.+++. .+++++++|+.+ +++.. |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 3455555 45678999999999999999998743 37888888 7888887754 479999999987 66543 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC--CCCCcchHH--------hhhhhh-----hhhhhhhcCCC
Q 016366 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP--EIPEVSSAA--------RETSLL-----DVLLMTRDGGG 354 (390)
Q Consensus 290 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~--~~~~~~~~~--------~~~~~~-----d~~~~~~~~~g 354 (390)
++..++|++++.. .+|++++++|+|||++++.+.... ......+.. .....+ ...........
T Consensus 112 ~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 3bkw_A 112 YSSLALHYVEDVA--RLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK 189 (243)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCE
T ss_pred EEeccccccchHH--HHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEE
Confidence 9999999998755 899999999999999998764311 000000000 000000 00001001122
Q ss_pred cccCHHHHHHHHHHCCCCeeEEEec
Q 016366 355 RERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 355 ~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
..++.++|.++|+++||+++++...
T Consensus 190 ~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 190 HHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EeccHHHHHHHHHHcCCEeeeeccC
Confidence 3468999999999999999998754
No 58
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.66 E-value=2.7e-16 Score=143.69 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=112.1
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCC-CCCCC--cEEE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-SVPEG--DAIL 290 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~-~~p~~--D~i~ 290 (390)
..+++.++ ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+ + +.. |+|+
T Consensus 23 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLY 100 (259)
T ss_dssp HHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEE
Confidence 35566665 56778999999999999999999999899999998 888888876 4789999999987 5 443 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhh-hc-----CCCcccCHHHHHH
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT-RD-----GGGRERTKKEYTE 364 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~-----~~g~~~t~~e~~~ 364 (390)
+..++|++++.. .+|++++++|+|||++++.++.....+ .............+. .. .....++.++|.+
T Consensus 101 ~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (259)
T 2p35_A 101 ANAVFQWVPDHL--AVLSQLMDQLESGGVLAVQMPDNLQEP---THIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFN 175 (259)
T ss_dssp EESCGGGSTTHH--HHHHHHGGGEEEEEEEEEEEECCTTSH---HHHHHHHHHHHSTTGGGC-------CCCCCHHHHHH
T ss_pred EeCchhhCCCHH--HHHHHHHHhcCCCeEEEEEeCCCCCcH---HHHHHHHHhcCcchHHHhccccccccCCCCHHHHHH
Confidence 999999998755 899999999999999999876432211 000000000000000 00 1234578999999
Q ss_pred HHHHCCCCee
Q 016366 365 LAIAAGFKGI 374 (390)
Q Consensus 365 ll~~aGf~~~ 374 (390)
+|+++||++.
T Consensus 176 ~l~~aGf~v~ 185 (259)
T 2p35_A 176 ALSPKSSRVD 185 (259)
T ss_dssp HHGGGEEEEE
T ss_pred HHHhcCCceE
Confidence 9999999743
No 59
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.66 E-value=4.7e-16 Score=140.30 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=107.3
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC-C-cEEEecccccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKWILHC 297 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~-~-D~i~~~~vlh~ 297 (390)
..+|||||||+|.++..+++ +..+++++|+ +.+++.+++. .+++++++|+.+..+. . |+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999987 4678999998 7888877652 3599999999983343 3 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
+++++..++|++++++|+|||++++.+......... ....++.++|.++|+++||+++++.
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEE
Confidence 997778899999999999999999987654332110 1112579999999999999999988
Q ss_pred ecC
Q 016366 378 SCV 380 (390)
Q Consensus 378 ~~~ 380 (390)
..+
T Consensus 206 ~~~ 208 (235)
T 3lcc_A 206 ENP 208 (235)
T ss_dssp ECT
T ss_pred ecC
Confidence 775
No 60
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.65 E-value=1.1e-15 Score=141.59 Aligned_cols=157 Identities=16% Similarity=0.121 Sum_probs=114.1
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC-cEEEec
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILMK 292 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~-D~i~~~ 292 (390)
.+++.++ ..+..+|||||||+|.++..+++ +..+++++|+ +.+++.+++. ++++++.+|+.+ +++.. |+|++.
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 124 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN 124 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence 4555555 56778999999999999999998 6789999998 8888888764 789999999988 55444 999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhh---hhcCCCcccCHHHHHHHHHHC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM---TRDGGGRERTKKEYTELAIAA 369 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~g~~~t~~e~~~ll~~a 369 (390)
+++|++++.. .+|++++++|+|||++++........ ................ ........++.++|.++|+++
T Consensus 125 ~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 200 (279)
T 3ccf_A 125 AMLHWVKEPE--AAIASIHQALKSGGRFVAEFGGKGNI--KYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQ 200 (279)
T ss_dssp SCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECTTTT--HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHH
T ss_pred chhhhCcCHH--HHHHHHHHhcCCCcEEEEEecCCcch--HHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHc
Confidence 9999998865 89999999999999999876643221 0111000000000000 000012356899999999999
Q ss_pred CCCeeEEEecC
Q 016366 370 GFKGINFASCV 380 (390)
Q Consensus 370 Gf~~~~~~~~~ 380 (390)
||+++++....
T Consensus 201 Gf~~~~~~~~~ 211 (279)
T 3ccf_A 201 GFDVTYAALFN 211 (279)
T ss_dssp TEEEEEEEEEE
T ss_pred CCEEEEEEEec
Confidence 99998876543
No 61
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.65 E-value=1e-15 Score=140.17 Aligned_cols=147 Identities=12% Similarity=0.100 Sum_probs=104.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--cEEEecccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWIL 295 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~--D~i~~~~vl 295 (390)
..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++.+++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 466789999999999999999987 467888998 7788877643 689999999987 66654 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcC---CCcccCHHHHHHHHHHCCCC
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG---GGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~g~~~t~~e~~~ll~~aGf~ 372 (390)
|++++.. .+|++++++|+|||++++. ...++ . .........+..+......+ ....++.+++.++|+++||+
T Consensus 115 ~~~~~~~--~~l~~~~~~L~pgG~l~~~-~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPDWP--KVLAEAIRVLKPGGALLEG-WDQAE-A-SPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTTHH--HHHHHHHHHEEEEEEEEEE-EEEEC-C-CHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCCHH--HHHHHHHHHCCCCcEEEEE-ecCCC-c-cHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 9998755 8999999999999999987 21111 0 11000001111111111010 12346789999999999999
Q ss_pred eeEEEe
Q 016366 373 GINFAS 378 (390)
Q Consensus 373 ~~~~~~ 378 (390)
++.+..
T Consensus 190 ~~~~~~ 195 (263)
T 2yqz_A 190 PRTREV 195 (263)
T ss_dssp CEEEEE
T ss_pred cceEEE
Confidence 876543
No 62
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.65 E-value=6.5e-16 Score=143.55 Aligned_cols=155 Identities=16% Similarity=0.181 Sum_probs=112.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-C-CCCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S-VPEG 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~-~p~~ 286 (390)
.++..++ .++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+ + ++.+
T Consensus 60 ~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 60 RVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred HHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence 4555554 23579999999999999999988 568899998 8888887753 679999999987 4 3443
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhh-------hcCCCccc
Q 016366 287 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT-------RDGGGRER 357 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~g~~~ 357 (390)
|+|++.+++|++++.. ++|++++++|+|||++++.+....... ............... .......+
T Consensus 136 ~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (285)
T 4htf_A 136 PVDLILFHAVLEWVADPR--SVLQTLWSVLRPGGVLSLMFYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLSPDYPR 210 (285)
T ss_dssp CEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEEBHHHHH---HHHHHTTCHHHHHTTCCCC----CCCSCCB
T ss_pred CceEEEECchhhcccCHH--HHHHHHHHHcCCCeEEEEEEeCCchHH---HHHHHhcCHHHHhhhccccccccCCCCCCC
Confidence 9999999999998875 899999999999999999876532210 000000000000000 00123567
Q ss_pred CHHHHHHHHHHCCCCeeEEEecC
Q 016366 358 TKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 358 t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
+.+++.++|+++||+++++..+.
T Consensus 211 ~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 211 DPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEES
T ss_pred CHHHHHHHHHHCCCceeeeeeEE
Confidence 89999999999999999887764
No 63
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.64 E-value=2.6e-15 Score=133.99 Aligned_cols=137 Identities=22% Similarity=0.189 Sum_probs=103.7
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCChhHH
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHC 303 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~ 303 (390)
..+|||||||+|.++..+++. +++|+ +.+++.+++. +++++.+|+.+ +++.+ |+|++.+++|++++..
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~- 119 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPE- 119 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHH-
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHH-
Confidence 789999999999999998765 77887 8888888776 79999999987 66543 9999999999998765
Q ss_pred HHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 304 LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 304 ~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
.+|++++++|+|||++++.+..... .......... ...........++.++|.++|+++||+++++...
T Consensus 120 -~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 120 -RALKEAYRILKKGGYLIVGIVDRES-----FLGREYEKNK-EKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp -HHHHHHHHHEEEEEEEEEEEECSSS-----HHHHHHHHTT-TC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred -HHHHHHHHHcCCCcEEEEEEeCCcc-----HHHHHHHHHh-cCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 8999999999999999998764322 1111000000 0000011345579999999999999999988655
No 64
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.64 E-value=5.5e-16 Score=141.39 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=110.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCCC--cEE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAI 289 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~~--D~i 289 (390)
.+.+.++ ..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 4445444 446789999999999999999998764 8899998 8888887753 689999999987 66543 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC--C---------CCcchHHhhhhhhh-----hhhhhhcCC
Q 016366 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE--I---------PEVSSAARETSLLD-----VLLMTRDGG 353 (390)
Q Consensus 290 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~--~---------~~~~~~~~~~~~~d-----~~~~~~~~~ 353 (390)
++..++|++++.. ++|++++++|+|||++++....... . ............++ .........
T Consensus 113 ~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
T 3g5l_A 113 LSSLALHYIASFD--DICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ 190 (253)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred EEchhhhhhhhHH--HHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence 9999999997754 8999999999999999987443110 0 00000000000000 000000001
Q ss_pred CcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 354 GRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 354 g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
...+|.++|.++|+++||+++++...
T Consensus 191 ~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 191 KYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cEecCHHHHHHHHHHcCCeeeeeecC
Confidence 12349999999999999999998754
No 65
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.64 E-value=1.9e-15 Score=135.75 Aligned_cols=149 Identities=19% Similarity=0.166 Sum_probs=109.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----------CCceEEECCCCC-CCCCC--cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SVPEG--DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----------~rv~~~~gd~~~-~~p~~--D~i~ 290 (390)
++..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. .+++++.+|+.+ +++.. |+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 46789999999999999999998 568899998 7787776641 257999999988 66543 9999
Q ss_pred eccccccCChh-HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc--------C------CCc
Q 016366 291 MKWILHCWDDD-HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD--------G------GGR 355 (390)
Q Consensus 291 ~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~--------~------~g~ 355 (390)
+..++|++++. ...++|++++++|+|||++++.+........ ................ . ...
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK---LYRKRYLHDFPITKEEGSFLARDPETGETEFIAH 183 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH---HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH---HHHHHhhhhccchhhhcceEecccccCCcceeeE
Confidence 99999999764 4668999999999999999999876543211 1000111111110000 0 013
Q ss_pred ccCHHHHHHHHHHCCCCeeEEEec
Q 016366 356 ERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 356 ~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
.++.++|.++|+++||+++++...
T Consensus 184 ~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 184 HFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eCCHHHHHHHHHHcCCEEEEEEec
Confidence 579999999999999999988643
No 66
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.64 E-value=1.7e-15 Score=137.08 Aligned_cols=162 Identities=12% Similarity=0.088 Sum_probs=111.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-cEEEecc-cccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKW-ILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D~i~~~~-vlh~ 297 (390)
+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .+++++++|+.+ +.+.. |+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 56799999999999999999884 57899998 8888887753 279999999987 56544 9999998 9999
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEEEecccC-------CCCCcchHH-----hh------hhhhhhhhhhhcC------
Q 016366 298 WD-DDHCLRILKNCYKAVPGNGKVIVMNSIVP-------EIPEVSSAA-----RE------TSLLDVLLMTRDG------ 352 (390)
Q Consensus 298 ~~-d~~~~~~L~~~~~~L~pgG~lli~e~~~~-------~~~~~~~~~-----~~------~~~~d~~~~~~~~------ 352 (390)
++ +++..++|++++++|+|||++++...... ......... +. .....+.++....
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF 194 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccccc
Confidence 94 35677999999999999999987433210 000000000 00 0000000000000
Q ss_pred ----CCcccCHHHHHHHHHHCCCCeeEEEec--------CCceeEEEEeC
Q 016366 353 ----GGRERTKKEYTELAIAAGFKGINFASC--------VCNLYIMEFFK 390 (390)
Q Consensus 353 ----~g~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~vi~~~k 390 (390)
..+.++.++|.++|+++||+++++... .+...++.++|
T Consensus 195 ~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK 244 (246)
T 1y8c_A 195 DEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred EEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence 124569999999999999999998754 13444666664
No 67
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.64 E-value=5.7e-15 Score=142.67 Aligned_cols=219 Identities=10% Similarity=0.033 Sum_probs=136.9
Q ss_pred ChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccCCCCCChHHHHhc
Q 016366 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMAL 127 (390)
Q Consensus 48 glfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~ 127 (390)
++|..| . +|.|++|||+++++ +++.+++||+.|.+.|+++. .++ |++|+.+..+.......+..+.+..
T Consensus 47 ~ll~~L-~-~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~----~~~-~~lt~~~~~~l~~~~~~~~~~~~~~ 115 (373)
T 2qm3_A 47 NVLSAV-L-ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTF----EDG-VKLTEKGEELVAEYGIGKRYDFTCP 115 (373)
T ss_dssp HHHHHH-H-HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC----SSS-SEECHHHHHHHHHHTCCCCCC----
T ss_pred HHHHHh-c-CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEE----CCC-EEECHHHHHHHHhcCccccccccch
Confidence 778888 4 59999999999999 99999999999999999985 334 9999876655443211111111000
Q ss_pred -ccC-hhhhhhHHHHHhhccccCCCcchhhhhhccccchhhccchhhhHhcCCchhhhhcCCChhhhcccCchHHHHHHH
Q 016366 128 -PLD-KVFMESWYIIILSFFFFPLSGQIYIVVNLSNFKNACRLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHE 205 (390)
Q Consensus 128 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 205 (390)
..+ ...+..| ...+..+.+.++....+. ..++.....++ .....
T Consensus 116 ~~~g~g~~~~~~--------------------------~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~--~~~~~ 161 (373)
T 2qm3_A 116 HCQGKTVDLQAF--------------------------ADLLEQFREIVKDRPEPL------HEFDQAYVTPE--TTVAR 161 (373)
T ss_dssp --------CGGG--------------------------HHHHHHHHHHHTTCCCCC------GGGTCCCBCHH--HHHHH
T ss_pred hhcCCCcchhhh--------------------------HHHHHHHHHHHhcCCccc------hhcCCeecCHH--HHHHH
Confidence 000 0000000 001113334444322110 01110000111 11110
Q ss_pred HHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECC
Q 016366 206 AMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGN 278 (390)
Q Consensus 206 ~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd 278 (390)
.. .... .. ..++.+|||+| |+|.++..+++..|+.+++++|+ +.+++.++++ ++|+++.+|
T Consensus 162 ~l---------~~~~-~~-~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D 229 (373)
T 2qm3_A 162 VI---------LMHT-RG-DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFD 229 (373)
T ss_dssp HH---------HHHH-TT-CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred HH---------HHhh-cC-CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEECh
Confidence 00 0011 11 23468999999 99999999999988889999999 8899888753 379999999
Q ss_pred CCCCCCC----C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 279 MFESVPE----G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 279 ~~~~~p~----~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+.+++|. . |+|+++..++... ...+|++++++|+|||++++.+..
T Consensus 230 ~~~~l~~~~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 230 LRKPLPDYALHKFDTFITDPPETLEA---IRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp TTSCCCTTTSSCBSEEEECCCSSHHH---HHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred hhhhchhhccCCccEEEECCCCchHH---HHHHHHHHHHHcccCCeEEEEEEe
Confidence 9885542 3 9999988776542 468999999999999976555544
No 68
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.63 E-value=2.1e-15 Score=131.30 Aligned_cols=132 Identities=18% Similarity=0.238 Sum_probs=108.3
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC--cEEEe
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILM 291 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~--D~i~~ 291 (390)
.++..+ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.. |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 455554 356789999999999999999987 468888888 7888887763 679999999988 66643 99999
Q ss_pred c-cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 292 K-WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 292 ~-~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
. .++|+++++....+|+++++.|+|||++++..... ..++.+++.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcC
Confidence 8 89999988888899999999999999999864321 1257899999999999
Q ss_pred CCeeEEEec
Q 016366 371 FKGINFASC 379 (390)
Q Consensus 371 f~~~~~~~~ 379 (390)
|+++++...
T Consensus 167 f~~~~~~~~ 175 (195)
T 3cgg_A 167 LELENAFES 175 (195)
T ss_dssp EEEEEEESS
T ss_pred CEEeeeecc
Confidence 999888654
No 69
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.62 E-value=3.7e-16 Score=145.99 Aligned_cols=146 Identities=14% Similarity=0.247 Sum_probs=105.4
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----------------------------------
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------------------------------- 269 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------------------------------- 269 (390)
....+|||||||+|.++..++++++..+++++|+ +.+++.|++.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 3568999999999999999999999999999998 7788877642
Q ss_pred -----------------------------CCceEEECCCCCCC------CC-C-cEEEeccccccC----ChhHHHHHHH
Q 016366 270 -----------------------------AGVEHVGGNMFESV------PE-G-DAILMKWILHCW----DDDHCLRILK 308 (390)
Q Consensus 270 -----------------------------~rv~~~~gd~~~~~------p~-~-D~i~~~~vlh~~----~d~~~~~~L~ 308 (390)
.+|+|+++|+.... +. . |+|++.++++++ +++...++|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 47999999998632 33 3 999999999775 6777889999
Q ss_pred HHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHH--CCCCeeEEEec
Q 016366 309 NCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA--AGFKGINFASC 379 (390)
Q Consensus 309 ~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~--aGf~~~~~~~~ 379 (390)
+++++|+|||+|++........ ......... ....+ ......++++.++|.+ +||+.+++...
T Consensus 205 ~~~~~LkpGG~lil~~~~~~~y------~~~~~~~~~-~~~~~-~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQPWSSY------GKRKTLTET-IYKNY-YRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHEEEEEEEEEECCCHHHH------HTTTTSCHH-HHHHH-HHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHhCCCcEEEEecCCchhh------hhhhcccHH-HHhhh-hcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 9999999999988753321110 000000000 00001 1223347899999999 99998887655
No 70
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.62 E-value=1e-15 Score=136.63 Aligned_cols=153 Identities=17% Similarity=0.103 Sum_probs=110.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCC-----CCCC--cE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-----VPEG--DA 288 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~-----~p~~--D~ 288 (390)
.++..+. ...+.+|||||||+|.++..+++. ..+++++|+ +.+++.+++..++++..+|+.+. .+.. |+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 4555555 445689999999999999999988 568899998 88999998888899999887641 2222 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc-----CCCcccCHHHHH
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD-----GGGRERTKKEYT 363 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~g~~~t~~e~~ 363 (390)
|++.+++| .++.. .+|++++++|+|||++++.++........... ..+......... .....++.++|.
T Consensus 120 v~~~~~l~-~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 120 ICANFALL-HQDII--ELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEESCCC-SSCCH--HHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred EEECchhh-hhhHH--HHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHHH
Confidence 99999999 66655 89999999999999999988764432211000 000000000000 011346999999
Q ss_pred HHHHHCCCCeeEEEe
Q 016366 364 ELAIAAGFKGINFAS 378 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~ 378 (390)
++|+++||+++++..
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999999875
No 71
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.62 E-value=3.3e-15 Score=135.04 Aligned_cols=169 Identities=18% Similarity=0.225 Sum_probs=113.7
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-c
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-D 287 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D 287 (390)
..+.+.++ ...+|||||||+|.++..+++. .+++++|+ +.+++.+++. .+++++++|+.+ +.+.. |
T Consensus 25 ~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD 98 (243)
T 3d2l_A 25 AWVLEQVE---PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVD 98 (243)
T ss_dssp HHHHHHSC---TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEE
T ss_pred HHHHHHcC---CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcC
Confidence 34444433 4589999999999999999887 68899998 8888887753 579999999987 56544 9
Q ss_pred EEEecc-ccccC-ChhHHHHHHHHHHHhCCCCcEEEEEecccC-------CCC-----Cc---chHH-----hhhhhhhh
Q 016366 288 AILMKW-ILHCW-DDDHCLRILKNCYKAVPGNGKVIVMNSIVP-------EIP-----EV---SSAA-----RETSLLDV 345 (390)
Q Consensus 288 ~i~~~~-vlh~~-~d~~~~~~L~~~~~~L~pgG~lli~e~~~~-------~~~-----~~---~~~~-----~~~~~~d~ 345 (390)
+|++.. ++|++ +.++..++|++++++|+|||++++...... ... .. .+.. ......++
T Consensus 99 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (243)
T 3d2l_A 99 AITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHEL 178 (243)
T ss_dssp EEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEE
T ss_pred EEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEE
Confidence 999986 99998 456677999999999999999887432110 000 00 0000 00000001
Q ss_pred hhhhhcCCC-----------cccCHHHHHHHHHHCCCCeeEEEecC--------CceeEEEEeC
Q 016366 346 LLMTRDGGG-----------RERTKKEYTELAIAAGFKGINFASCV--------CNLYIMEFFK 390 (390)
Q Consensus 346 ~~~~~~~~g-----------~~~t~~e~~~ll~~aGf~~~~~~~~~--------~~~~vi~~~k 390 (390)
.++....++ +.++.++++++|+++||+++++.... +...++.++|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K 242 (243)
T 3d2l_A 179 TFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEK 242 (243)
T ss_dssp EEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEE
T ss_pred EEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEe
Confidence 111000111 35799999999999999999987541 3445666665
No 72
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.60 E-value=1.6e-15 Score=137.54 Aligned_cols=148 Identities=12% Similarity=0.076 Sum_probs=107.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCC-------CcEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPE-------GDAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~-------~D~i~~~ 292 (390)
..+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++. .+++++++|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999988 6777887 7888887652 589999999987 3322 4899999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhh-----hhhh-hhhhcCCCcccCHHHHHHHH
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL-----LDVL-LMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~-----~d~~-~~~~~~~g~~~t~~e~~~ll 366 (390)
.++|++++++..++|++++++|+|||++++.+...++.. ........ ..+. ..........++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCID---FFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH---HHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccH---HHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999977778999999999999999999998654310 00000000 0000 00000112236899999999
Q ss_pred HHCCCCeeEEEec
Q 016366 367 IAAGFKGINFASC 379 (390)
Q Consensus 367 ~~aGf~~~~~~~~ 379 (390)
+||+++.....
T Consensus 209 --aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 --PDFEILSQGEG 219 (245)
T ss_dssp --TTEEEEEEECC
T ss_pred --CCCEEEecccc
Confidence 99999886544
No 73
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.60 E-value=2.7e-15 Score=137.29 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=85.1
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCChhH
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 302 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~ 302 (390)
...+|||||||+|.++..+++.+. +++++|+ +.|++.+++.++|+++++|+++ +++.+ |+|++..++|+++. +
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~-~ 115 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL-D 115 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH-H
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH-H
Confidence 457999999999999999998874 6788887 8899999999999999999998 78765 99999999998763 3
Q ss_pred HHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 303 CLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 303 ~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
+++++++|+|||||+|++.....+
T Consensus 116 --~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 116 --RFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp --HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred --HHHHHHHHHcCCCCEEEEEECCCC
Confidence 789999999999999999876543
No 74
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.60 E-value=6.3e-15 Score=130.94 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=103.3
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEe
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILM 291 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~ 291 (390)
...+++.+....+..+|||||||+|.++..++ .+++++|+... +++++.+|+.+ +++.+ |+|++
T Consensus 55 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 55 VDRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEE
Confidence 33455555434566899999999999998873 56888887322 68899999988 66654 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCC
Q 016366 292 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 371 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf 371 (390)
..++|+ ++. ..+|++++++|+|||++++.+.... ..+.++|.++++++||
T Consensus 122 ~~~l~~-~~~--~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf 171 (215)
T 2zfu_A 122 CLSLMG-TNI--RDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGF 171 (215)
T ss_dssp ESCCCS-SCH--HHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTE
T ss_pred ehhccc-cCH--HHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCC
Confidence 999984 544 4899999999999999999875310 1278999999999999
Q ss_pred CeeEEEecCCceeEEEEeC
Q 016366 372 KGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 372 ~~~~~~~~~~~~~vi~~~k 390 (390)
++++.........++.++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 172 KIVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEEECCSTTCEEEEEEE
T ss_pred EEEEEecCCCeEEEEEEEe
Confidence 9998877777777777664
No 75
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.60 E-value=5.4e-15 Score=129.33 Aligned_cols=142 Identities=11% Similarity=0.124 Sum_probs=110.0
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCC-c
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-D 287 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~-D 287 (390)
.+++.++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3444455 445679999999999999999987 568999998 7888877652 479999999987 55444 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
+|++..++|++++++...+|++++++|+|||++++.+.......... ......++.++++++|+
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhc
Confidence 99999999999977778999999999999999998887654421100 01233568899999997
Q ss_pred HCCCCeeEEEec
Q 016366 368 AAGFKGINFASC 379 (390)
Q Consensus 368 ~aGf~~~~~~~~ 379 (390)
+ |++++....
T Consensus 164 ~--f~~~~~~~~ 173 (199)
T 2xvm_A 164 G--WERVKYNED 173 (199)
T ss_dssp T--SEEEEEECC
T ss_pred C--CeEEEeccc
Confidence 6 998887544
No 76
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.59 E-value=2.1e-15 Score=134.85 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=110.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC---CCCCC--cEE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DAI 289 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~---~~p~~--D~i 289 (390)
..+++.++ .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++.. .+++.+|+.+ +++.+ |+|
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 34555443 46689999999999999999988 4 78999998 78888877643 4789999875 34433 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhh-hhhh-----hhcCCCcccCHHHHH
Q 016366 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLD-VLLM-----TRDGGGRERTKKEYT 363 (390)
Q Consensus 290 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d-~~~~-----~~~~~g~~~t~~e~~ 363 (390)
++.+++|++++.. .+|+++++.|+|||++++..+..... ........ .... ........++.++|.
T Consensus 98 ~~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (230)
T 3cc8_A 98 IFGDVLEHLFDPW--AVIEKVKPYIKQNGVILASIPNVSHI------SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEML 169 (230)
T ss_dssp EEESCGGGSSCHH--HHHHHTGGGEEEEEEEEEEEECTTSH------HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHH
T ss_pred EECChhhhcCCHH--HHHHHHHHHcCCCCEEEEEeCCcchH------HHHHHHhcCCceeccCCCCCcceEEEecHHHHH
Confidence 9999999998875 89999999999999999987653221 00000000 0000 000122457999999
Q ss_pred HHHHHCCCCeeEEEecC
Q 016366 364 ELAIAAGFKGINFASCV 380 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~~ 380 (390)
++++++||+++++....
T Consensus 170 ~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 170 RMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHTTEEEEEEEEEE
T ss_pred HHHHHcCCeEEEEEecc
Confidence 99999999999887654
No 77
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.59 E-value=4.5e-15 Score=138.54 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=96.8
Q ss_pred CCcceEEEEcCCccHHHH----HHHhhCCCCeE--EEecc-hHHHhhCCCC-------CCceE--EECCCCC-C------
Q 016366 226 QNVERLVDVGGGFGVTLS----MITSKYPQIKA--VNFDL-PHVVQDAPSY-------AGVEH--VGGNMFE-S------ 282 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~----~l~~~~p~~~~--~~~Dl-~~~~~~a~~~-------~rv~~--~~gd~~~-~------ 282 (390)
.+..+|||||||+|.++. .++.++|++++ +++|. +.|++.+++. +++++ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 346799999999997654 45566788854 99998 7888876642 34444 4555543 2
Q ss_pred CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcC---CCccc
Q 016366 283 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG---GGRER 357 (390)
Q Consensus 283 ~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~g~~~ 357 (390)
++.+ |+|++.+++||++|.. ++|++++++|||||++++.+...+. .... .+... ....+ ....+
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~-----~~~~--~~~~~--~~~~~~~~~~~~~ 199 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSGSS-----GWDK--LWKKY--GSRFPQDDLCQYI 199 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECTTS-----HHHH--HHHHH--GGGSCCCTTCCCC
T ss_pred cCCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCCCcEEEEEEecCCc-----cHHH--HHHHH--HHhccCCCcccCC
Confidence 2333 9999999999999876 8899999999999999998654211 1111 01110 00011 12457
Q ss_pred CHHHHHHHHHHCCCCeeEE
Q 016366 358 TKKEYTELAIAAGFKGINF 376 (390)
Q Consensus 358 t~~e~~~ll~~aGf~~~~~ 376 (390)
+.++|.++|+++||+++..
T Consensus 200 ~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 200 TSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHCCCceEEE
Confidence 8999999999999998764
No 78
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.57 E-value=1.7e-15 Score=133.74 Aligned_cols=152 Identities=7% Similarity=-0.045 Sum_probs=107.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--cEEEecccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWIL 295 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~--D~i~~~~vl 295 (390)
..+..+|||+|||+|..+..++.. ++.+++++|. +.+++.+++. .+++++++|+.+ +++.+ |+|++.+++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 446789999999999985555444 4678999998 7888877653 679999999988 66543 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
||++.++..++|++++++|+|||++++.+...++.............+.............++.+++.++|++.||...+
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 99987778899999999999999999988875543211000000000000000000012456899999999999987665
Q ss_pred EE
Q 016366 376 FA 377 (390)
Q Consensus 376 ~~ 377 (390)
..
T Consensus 180 ~~ 181 (209)
T 2p8j_A 180 DR 181 (209)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 79
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.7e-14 Score=135.06 Aligned_cols=160 Identities=17% Similarity=0.195 Sum_probs=110.3
Q ss_pred HHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC--------CCC
Q 016366 202 TYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS--------YAG 271 (390)
Q Consensus 202 ~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~--------~~r 271 (390)
.|.+....+.......+.... ..+..+|||||||+|.++..+++++ +..+++++|+ +.+++.+++ .++
T Consensus 13 ~y~~~rp~y~~~~~~~l~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~ 90 (299)
T 3g5t_A 13 RYSSSRPSYPSDFYKMIDEYH--DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN 90 (299)
T ss_dssp HHHHHSCCCCHHHHHHHHHHC--CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTT
T ss_pred HHhhcCCCCCHHHHHHHHHHh--cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCc
Confidence 344444444444444444432 2467899999999999999999987 8899999998 888888765 368
Q ss_pred ceEEECCCCC-CCCC------C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc---cCCCCCcchHHhh
Q 016366 272 VEHVGGNMFE-SVPE------G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI---VPEIPEVSSAARE 339 (390)
Q Consensus 272 v~~~~gd~~~-~~p~------~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~---~~~~~~~~~~~~~ 339 (390)
++++++|+.+ +++. + |+|++..++|++ +. .++|+++++.|+|||++++.+.. ..+.+..
T Consensus 91 v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~------ 161 (299)
T 3g5t_A 91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DF--EKFQRSAYANLRKDGTIAIWGYADPIFPDYPEF------ 161 (299)
T ss_dssp EEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-CH--HHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGG------
T ss_pred eEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-CH--HHHHHHHHHhcCCCcEEEEEecCCccccCcHHH------
Confidence 9999999988 5544 3 999999999999 54 48999999999999999995443 3222111
Q ss_pred hhhhhhhhhhh-cCCCc--ccCHHHHHHHHHHCCCC
Q 016366 340 TSLLDVLLMTR-DGGGR--ERTKKEYTELAIAAGFK 372 (390)
Q Consensus 340 ~~~~d~~~~~~-~~~g~--~~t~~e~~~ll~~aGf~ 372 (390)
...+.-..... ..+.. .+..+.++++++++||.
T Consensus 162 ~~~~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gfp 197 (299)
T 3g5t_A 162 DDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLD 197 (299)
T ss_dssp TTHHHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCCC
T ss_pred HHHHHHhccCcccccchhhchhhHHHHHhhhccCCC
Confidence 11111111000 00111 14567789999999994
No 80
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.56 E-value=2e-14 Score=131.16 Aligned_cols=133 Identities=10% Similarity=-0.015 Sum_probs=103.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----------------------CCCceEEECCCCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------------------YAGVEHVGGNMFE 281 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------------~~rv~~~~gd~~~ 281 (390)
.+..+|||+|||+|..+..+++. +.+++++|+ +.+++.|++ ..+|+++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46689999999999999999987 458999998 888887642 1579999999998
Q ss_pred -CCC--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCccc
Q 016366 282 -SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRER 357 (390)
Q Consensus 282 -~~p--~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~ 357 (390)
+.+ .. |+|++..++|++++++..+++++++++|+|||+++++....+.... .......
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~------------------~g~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH------------------AGPPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC------------------CCSSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC------------------CCCCCCC
Confidence 544 33 9999999999999888889999999999999999876655332100 0011125
Q ss_pred CHHHHHHHHHHCCCCeeEEEec
Q 016366 358 TKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 358 t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
+.+++.+++++ +|+++.....
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEecc
Confidence 79999999987 5998877543
No 81
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.53 E-value=3.1e-15 Score=139.40 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=88.1
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------CCceEEECCCCC-C
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE-S 282 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------~rv~~~~gd~~~-~ 282 (390)
...+...++ ..+..+|||||||+|.++..++++.. +++++|+ +.+++.+++. .++.+..+|+.+ +
T Consensus 46 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 46 KAWLLGLLR-QHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 122 (293)
T ss_dssp HHHHHHHHH-HTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHHhc-ccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence 344555555 45678999999999999999999854 8889998 7888877541 578899999887 5
Q ss_pred ---CCCC--cEEEec-cccccCCh-----hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 283 ---VPEG--DAILMK-WILHCWDD-----DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 283 ---~p~~--D~i~~~-~vlh~~~d-----~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
++.+ |+|++. +++||+++ ++..++|++++++|+|||++++..+
T Consensus 123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4543 999998 99999998 6677999999999999999998764
No 82
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.52 E-value=1.7e-13 Score=125.18 Aligned_cols=151 Identities=19% Similarity=0.273 Sum_probs=105.7
Q ss_pred HHHHHhhccCCcceEEEEcCCc--cHHHHHHH-hhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC---C
Q 016366 217 RILEHYEGFQNVERLVDVGGGF--GVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---V 283 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~--G~~~~~l~-~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~---~ 283 (390)
..+..+..-.+..+|||||||+ +.++.+++ +..|+.+++++|. |.|++++++. .+++++++|+.++ +
T Consensus 68 rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l 147 (277)
T 3giw_A 68 RAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASIL 147 (277)
T ss_dssp HHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHH
T ss_pred HHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhh
Confidence 3344443123567999999997 44445554 4689999999998 9999999862 3699999999873 1
Q ss_pred --C---C------CcEEEeccccccCChhH-HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhc
Q 016366 284 --P---E------GDAILMKWILHCWDDDH-CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD 351 (390)
Q Consensus 284 --p---~------~D~i~~~~vlh~~~d~~-~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 351 (390)
| . ..+|+++.+||++++++ ...+|++++++|+|||+|++.+...+..+ ... ....+..... .
T Consensus 148 ~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p--~~~---~~~~~~~~~~-g 221 (277)
T 3giw_A 148 DAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP--QEV---GRVAREYAAR-N 221 (277)
T ss_dssp TCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH--HHH---HHHHHHHHHT-T
T ss_pred cccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH--HHH---HHHHHHHHhc-C
Confidence 1 1 13789999999999875 46899999999999999999988754321 111 1111211111 1
Q ss_pred CCCcccCHHHHHHHHHHCCCCeeE
Q 016366 352 GGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 352 ~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
.....||.+++.++|. ||.+++
T Consensus 222 ~p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 222 MPMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp CCCCCCCHHHHHHTTT--TSEECT
T ss_pred CCCccCCHHHHHHHhC--CCcccC
Confidence 1245689999999994 998764
No 83
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.52 E-value=2.9e-14 Score=139.69 Aligned_cols=152 Identities=12% Similarity=0.080 Sum_probs=109.6
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC------CCC-
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE------SVP- 284 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~------~~p- 284 (390)
.....+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++. .+......+.. +++
T Consensus 94 ~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 94 MLARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCC
Confidence 34456666666 6677899999999999999999874 48899998 7888888865 34443332221 122
Q ss_pred CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHH
Q 016366 285 EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 363 (390)
Q Consensus 285 ~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~ 363 (390)
.. |+|++.+++||+++.. .+|++++++|+|||++++..+.... .. ....+.... ......++.++|.
T Consensus 170 ~~fD~I~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~------~~---~~~~~~~~~-~~~~~~~s~~~l~ 237 (416)
T 4e2x_A 170 GPANVIYAANTLCHIPYVQ--SVLEGVDALLAPDGVFVFEDPYLGD------IV---AKTSFDQIF-DEHFFLFSATSVQ 237 (416)
T ss_dssp CCEEEEEEESCGGGCTTHH--HHHHHHHHHEEEEEEEEEEEECHHH------HH---HHTCGGGCS-TTCCEECCHHHHH
T ss_pred CCEEEEEECChHHhcCCHH--HHHHHHHHHcCCCeEEEEEeCChHH------hh---hhcchhhhh-hhhhhcCCHHHHH
Confidence 23 9999999999998765 8999999999999999987654321 00 000011110 1244567999999
Q ss_pred HHHHHCCCCeeEEEecC
Q 016366 364 ELAIAAGFKGINFASCV 380 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~~ 380 (390)
++++++||+++++...+
T Consensus 238 ~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 238 GMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHTTEEEEEEEEEC
T ss_pred HHHHHcCCEEEEEEEcc
Confidence 99999999999998765
No 84
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.52 E-value=2e-14 Score=131.62 Aligned_cols=140 Identities=11% Similarity=0.102 Sum_probs=103.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----C------------------------------
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A------------------------------ 270 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~------------------------------ 270 (390)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. +
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4567999999999999999988766 57888898 7788877542 1
Q ss_pred -Cc-eEEECCCCC-C-CCC---C--cEEEeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhh
Q 016366 271 -GV-EHVGGNMFE-S-VPE---G--DAILMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARE 339 (390)
Q Consensus 271 -rv-~~~~gd~~~-~-~p~---~--D~i~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~ 339 (390)
++ +++.+|+.+ + .+. + |+|++..++|++++. +...+|++++++|+|||++++.+....+. .
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-----~--- 205 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY-----Y--- 205 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E---
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce-----E---
Confidence 17 899999987 2 233 3 999999999954432 56699999999999999999988543210 0
Q ss_pred hhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 340 TSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 340 ~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
...+.. . .....+.+++.++|+++||+++++....
T Consensus 206 -~~~~~~----~-~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 -MIGEQK----F-SSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp -EETTEE----E-ECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred -EcCCcc----c-cccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 000000 0 1234588999999999999999887654
No 85
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.52 E-value=5.2e-14 Score=131.11 Aligned_cols=154 Identities=12% Similarity=0.011 Sum_probs=107.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CC-CCC--cEEEecc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SV-PEG--DAILMKW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~-p~~--D~i~~~~ 293 (390)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++++|+.+ ++ +.+ |+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 56789999999999999998876 4568999998 7888877652 368999999988 66 333 9999999
Q ss_pred cccc--CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCC--------CcchHH-------hhh----hhhhhhhhhhc-
Q 016366 294 ILHC--WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP--------EVSSAA-------RET----SLLDVLLMTRD- 351 (390)
Q Consensus 294 vlh~--~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~--------~~~~~~-------~~~----~~~d~~~~~~~- 351 (390)
++|+ .+.++..++|++++++|+|||++++..+....-. ...... ... ....+......
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 221 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 221 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence 9998 5666778999999999999999998775421100 000000 000 00000000000
Q ss_pred -CCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 352 -GGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 352 -~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.....++.++++++++++||+++++....
T Consensus 222 ~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 222 NCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred CCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 01245689999999999999999887653
No 86
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.51 E-value=1.1e-14 Score=133.75 Aligned_cols=140 Identities=14% Similarity=0.098 Sum_probs=98.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------------------------------
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------------------- 269 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---------------------------------- 269 (390)
..++.+|||||||+|.++..++...- .+++++|+ +.+++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 34567999999999988776665432 26888898 8888866531
Q ss_pred -CCce-EEECCCCCC--CC---C-C-cEEEeccccccC-C-hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHh
Q 016366 270 -AGVE-HVGGNMFES--VP---E-G-DAILMKWILHCW-D-DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 338 (390)
Q Consensus 270 -~rv~-~~~gd~~~~--~p---~-~-D~i~~~~vlh~~-~-d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 338 (390)
.+|+ ++++|+.+. ++ . . |+|++..+||+. + .++..++|++++++|||||+|++.+...... .
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-----~-- 204 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-----Y-- 204 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E--
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-----c--
Confidence 0133 889999872 22 2 2 999999999985 2 2456789999999999999999987643210 0
Q ss_pred hhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 339 ETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 339 ~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
...-. .+ ....++.+++.++|+++||+++++...
T Consensus 205 ---~~g~~---~~-~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 205 ---MVGKR---EF-SCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp ---EETTE---EE-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---eeCCe---Ee-eccccCHHHHHHHHHHCCCEEEEEeec
Confidence 00000 00 122458999999999999999988654
No 87
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.51 E-value=2.7e-13 Score=116.15 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=97.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCCCC--cEEEeccccccCChh-
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEG--DAILMKWILHCWDDD- 301 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p~~--D~i~~~~vlh~~~d~- 301 (390)
.+..+|||+|||+|.++..++++. +++++|+ +.+++. .++++++++|+.++++.. |+|+++..+|+.++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 345699999999999999999987 8888898 788887 567999999999866543 999999999865544
Q ss_pred ------HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 302 ------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 302 ------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
+...+++++.+.+ |||++++.+... .+.+++.++++++||+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEE
Confidence 3457899999999 999999876431 1367789999999999988
Q ss_pred EEecC
Q 016366 376 FASCV 380 (390)
Q Consensus 376 ~~~~~ 380 (390)
+....
T Consensus 146 ~~~~~ 150 (170)
T 3q87_B 146 LKVRK 150 (170)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 87654
No 88
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.51 E-value=7.8e-14 Score=124.17 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=97.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhh----CCC------CCCceEEECCCCC-CCCCC-cEEEe
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD----APS------YAGVEHVGGNMFE-SVPEG-DAILM 291 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~----a~~------~~rv~~~~gd~~~-~~p~~-D~i~~ 291 (390)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++++|+.+ +++.+ |.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 45678999999999999999999999999999998 776664 222 2589999999988 66544 66552
Q ss_pred c---ccc--ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 292 K---WIL--HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 292 ~---~vl--h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
. ..+ |+.++.. .+|++++++|||||++++........+... .+... ......+..+++.+++
T Consensus 105 ~~~~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~~~l~~~l 171 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSP--EMLRGMAAVCRPGASFLVALNLHAWRPSVP---------EVGEH--PEPTPDSADEWLAPRY 171 (218)
T ss_dssp ESCCHHHHHHHHTSSS--HHHHHHHHTEEEEEEEEEEEEGGGBTTBCG---------GGTTC--CCCCHHHHHHHHHHHH
T ss_pred EccchhhhhhhhccHH--HHHHHHHHHcCCCcEEEEEecccccccccc---------ccccC--CccchHHHHHHHHHHH
Confidence 2 222 2444443 899999999999999998443321111000 00000 0011122345688899
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||++.++..+.
T Consensus 172 ~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 172 AEAGWKLADCRYLE 185 (218)
T ss_dssp HHTTEEEEEEEEEC
T ss_pred HHcCCCceeeeccc
Confidence 99999999887654
No 89
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.50 E-value=6.6e-14 Score=123.85 Aligned_cols=137 Identities=17% Similarity=0.097 Sum_probs=99.3
Q ss_pred HHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCC-eEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC--cEEEe
Q 016366 218 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILM 291 (390)
Q Consensus 218 l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~--D~i~~ 291 (390)
++..+. .+..+|||||||+|.++..+ .. +++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++
T Consensus 29 ~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 101 (211)
T 2gs9_A 29 ALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLL 101 (211)
T ss_dssp HHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred HHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEE
Confidence 444443 26689999999999999887 34 8899998 7888887764 689999999987 66653 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCC
Q 016366 292 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 370 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aG 370 (390)
.+++|++++.. ++|++++++|+|||++++.++.... .+. .........-.......+.++.++++++|+ |
T Consensus 102 ~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 102 FTTLEFVEDVE--RVLLEARRVLRPGGALVVGVLEALS----PWA-ALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp ESCTTTCSCHH--HHHHHHHHHEEEEEEEEEEEECTTS----HHH-HHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred cChhhhcCCHH--HHHHHHHHHcCCCCEEEEEecCCcC----cHH-HHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 99999998765 8999999999999999998765322 111 000000000000001245679999999998 8
No 90
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.50 E-value=1.1e-13 Score=121.61 Aligned_cols=131 Identities=8% Similarity=0.053 Sum_probs=100.1
Q ss_pred eEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC--cEEEeccccccCCh
Q 016366 230 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDD 300 (390)
Q Consensus 230 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d 300 (390)
+|||||||+|.++..+++. ..+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|++. +++++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~ 107 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPS 107 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCH
Confidence 9999999999999999987 458999998 7888887753 379999999988 66643 999985 345676
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
++..++|++++++|+|||++++.+....... . ..... ......++.++++++|+ ||+++++...
T Consensus 108 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~--~~~~~----~~~~~~~~~~~l~~~l~--Gf~v~~~~~~ 171 (202)
T 2kw5_A 108 SLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ-------Y--NTGGP----KDLDLLPKLETLQSELP--SLNWLIANNL 171 (202)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEEEECTTTGG-------G--TSCCS----SSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccccc-------C--CCCCC----CcceeecCHHHHHHHhc--CceEEEEEEE
Confidence 7788999999999999999999887643310 0 00000 00123579999999998 9999987654
No 91
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.50 E-value=5e-13 Score=121.49 Aligned_cols=105 Identities=19% Similarity=0.330 Sum_probs=84.3
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-cE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 288 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D~ 288 (390)
.++.... ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++++|+.+ +.+.. |+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 108 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence 3444443 345689999999999999999987 468899998 8888887752 479999999987 55544 99
Q ss_pred EEec-cccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 289 ILMK-WILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 289 i~~~-~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
|++. ..+++++.++..++|++++++|+|||++++..
T Consensus 109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 9986 56777787788899999999999999988643
No 92
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.49 E-value=1.3e-14 Score=128.82 Aligned_cols=100 Identities=13% Similarity=0.213 Sum_probs=83.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCCCCCC-C-cEEEecccccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFESVPE-G-DAILMKWILHC 297 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~~~p~-~-D~i~~~~vlh~ 297 (390)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++++|+.+..+. . |+|++.+++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 5567899999999999999999986 47888887 778877765 35799999999883343 3 99999999999
Q ss_pred CCh-hHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 298 WDD-DHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 298 ~~d-~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+++ +...++|+++++.|+|||++++.++.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 996 45568999999999999999987764
No 93
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.49 E-value=1.9e-13 Score=126.88 Aligned_cols=141 Identities=10% Similarity=0.119 Sum_probs=107.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-cE
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 288 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D~ 288 (390)
.+++.++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++++|+.+ +.+.. |+
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 3444444 346789999999999999999988 458899998 7788877652 279999999987 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHH
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 368 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~ 368 (390)
|++..++|+++++....+|+++++.|+|||+++++.....+..... ......++.++++++++.
T Consensus 188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~ 251 (286)
T 3m70_A 188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD 251 (286)
T ss_dssp EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT
T ss_pred EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC
Confidence 9999999999988888999999999999999888776644321110 012334678889998854
Q ss_pred CCCCeeEEEe
Q 016366 369 AGFKGINFAS 378 (390)
Q Consensus 369 aGf~~~~~~~ 378 (390)
|+++....
T Consensus 252 --~~~~~~~~ 259 (286)
T 3m70_A 252 --WEFLEYNE 259 (286)
T ss_dssp --SEEEEEEC
T ss_pred --CEEEEEEc
Confidence 88877643
No 94
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.48 E-value=4.8e-13 Score=117.82 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=98.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC---C
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---E 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p---~ 285 (390)
..++..+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.++++ ++++++.+|+.+.++ .
T Consensus 30 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 30 AVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 34555565 66778999999999999999999999999999998 8888887753 689999999977433 2
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 286 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 286 ~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
.|+|++...++ ...++++++++.|+|||++++...... +.+++.++
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------------~~~~~~~~ 154 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTLD-----------------------------TLTKAVEF 154 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBHH-----------------------------HHHHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEecccc-----------------------------cHHHHHHH
Confidence 39999998876 244899999999999999998654310 25667889
Q ss_pred HHHCCC
Q 016366 366 AIAAGF 371 (390)
Q Consensus 366 l~~aGf 371 (390)
++++||
T Consensus 155 l~~~g~ 160 (204)
T 3e05_A 155 LEDHGY 160 (204)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 999998
No 95
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.48 E-value=2.4e-14 Score=133.24 Aligned_cols=150 Identities=12% Similarity=0.115 Sum_probs=101.0
Q ss_pred HHHHHHhhc-cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----C-------------------
Q 016366 216 ERILEHYEG-FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A------------------- 270 (390)
Q Consensus 216 ~~l~~~~~~-~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~------------------- 270 (390)
..+.+.+.. ..++.+|||||||+|.++. ++...+..+++++|+ +.+++.+++. +
T Consensus 59 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (289)
T 2g72_A 59 RCLAQTFATGEVSGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 137 (289)
T ss_dssp HHHHHHHHTSCSCCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred HHHHHHhCCCCCCCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence 344444431 1256799999999999543 343334568999998 8888766541 0
Q ss_pred -------------CceEEECCCCC--C-----CCCC--cEEEeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 271 -------------GVEHVGGNMFE--S-----VPEG--DAILMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 271 -------------rv~~~~gd~~~--~-----~p~~--D~i~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.++++.+|+.+ + ++.+ |+|++..++|++++. +..++|++++++|||||+|++.+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~ 217 (289)
T 2g72_A 138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL 217 (289)
T ss_dssp CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 14566778876 2 2232 999999999995433 5669999999999999999998644
Q ss_pred cCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 327 VPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 327 ~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.... . . ..+. . . ....++.++|.++|+++||+++++....
T Consensus 218 ~~~~-----~---~-~~~~---~-~-~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 218 EESW-----Y---L-AGEA---R-L-TVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp SCCE-----E---E-ETTE---E-E-ECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred Ccce-----E---E-cCCe---e-e-eeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 2110 0 0 0000 0 0 1234689999999999999998876543
No 96
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.47 E-value=5.5e-13 Score=119.89 Aligned_cols=141 Identities=13% Similarity=0.122 Sum_probs=100.0
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhC----CCCCCceEEECCCCC-----CCCCC-cEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA----PSYAGVEHVGGNMFE-----SVPEG-DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a----~~~~rv~~~~gd~~~-----~~p~~-D~i~~~~ 293 (390)
+.+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+ +..++++++.+|+.+ +++.. |+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55678999999999999999999988788999998 7777544 345789999999976 22333 9988
Q ss_pred ccccCChh-HHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 294 ILHCWDDD-HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 294 vlh~~~d~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
|+.++. ....+|+++++.|+|||++++. ......+..... . ....+++. +|+++||+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~-------~-----------~~~~~~l~-~l~~~Gf~ 206 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKDP-------K-----------EIFKEQKE-ILEAGGFK 206 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSCH-------H-----------HHHHHHHH-HHHHHTEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCCH-------H-----------HhhHHHHH-HHHHCCCE
Confidence 555543 3357799999999999999987 211111000000 0 01146777 89999999
Q ss_pred eeEEEecCCc---eeEEEEeC
Q 016366 373 GINFASCVCN---LYIMEFFK 390 (390)
Q Consensus 373 ~~~~~~~~~~---~~vi~~~k 390 (390)
++++..+... ..++.++|
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 207 IVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEEE
T ss_pred EEEEEccCCCccceEEEEEEe
Confidence 9998877643 56666543
No 97
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.47 E-value=1.7e-14 Score=130.51 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=92.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC---CCCCC--cEEEe---
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAILM--- 291 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~---~~p~~--D~i~~--- 291 (390)
.++.+|||||||+|..+..+++..|. +++++|+ |.+++.|++. .+++++.+|+.+ +++.. |.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 46789999999999999999988774 6888898 8899888752 468889998754 34543 77764
Q ss_pred --ccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHC
Q 016366 292 --KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 369 (390)
Q Consensus 292 --~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~a 369 (390)
...++++++. ..++++++|+|||||+|++.+...... ......+ .-.....+.+...|.++
T Consensus 138 ~~~~~~~~~~~~--~~~~~e~~rvLkPGG~l~f~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHTHQF--NFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKYS--------DITIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTTHHH--HHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTCS--------CHHHHHHHHTHHHHHHH
T ss_pred ecccchhhhcch--hhhhhhhhheeCCCCEEEEEecCCchh-------hhhhhhh--------hhhhhhHHHHHHHHHHc
Confidence 4555566554 489999999999999998765431110 0000000 00111245667788899
Q ss_pred CCCeeEEE
Q 016366 370 GFKGINFA 377 (390)
Q Consensus 370 Gf~~~~~~ 377 (390)
||+++.+.
T Consensus 201 GF~~~~i~ 208 (236)
T 3orh_A 201 GFRRENIR 208 (236)
T ss_dssp TCCGGGEE
T ss_pred CCeEEEEE
Confidence 99976553
No 98
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.46 E-value=2.6e-13 Score=121.66 Aligned_cols=145 Identities=12% Similarity=0.024 Sum_probs=92.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc--hHHHhhC---CCC------CCceEEECCCCCCCCC--CcEEEec
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDA---PSY------AGVEHVGGNMFESVPE--GDAILMK 292 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a---~~~------~rv~~~~gd~~~~~p~--~D~i~~~ 292 (390)
.+..+|||||||+|.++..++++.|+.+++++|+ +.|++.| +++ ++++++.+|+.+. |. .|.|.+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEEE
Confidence 4667999999999999999999999999999998 4455554 542 5799999999762 32 2555444
Q ss_pred cccccCChhH------HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 293 WILHCWDDDH------CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 293 ~vlh~~~d~~------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
.+.+.|+... ...+|++++++|||||++++......... .... ..... ... .......+++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~~~----~~~~~---~~~-~~~~~~~~el~~~l 172 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYE-EAEI----KKRGL---PLL-SKAYFLSEQYKAEL 172 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC----------------------C-CHHHHHSHHHHHHH
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccch-hchh----hhcCC---CCC-ChhhcchHHHHHHH
Confidence 4443333210 13689999999999999998554332210 0000 00000 000 00111123599999
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
+++||++..+....
T Consensus 173 ~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 173 SNSGFRIDDVKELD 186 (225)
T ss_dssp HHHTCEEEEEEEEC
T ss_pred HHcCCCeeeeeecC
Confidence 99999998877654
No 99
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.45 E-value=1.8e-13 Score=120.66 Aligned_cols=129 Identities=12% Similarity=0.044 Sum_probs=103.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCCC-cEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-DAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~~-D~i~~~~vlh~ 297 (390)
.+..+|||||||+|.++..+++ .+..+++++|+ +.+++.++++ .+++++.+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4568999999999999999776 46678999998 8888877752 34999999998754444 99999888765
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
...+++++++.|+|||++++.+.... +.+++.++++++||+++++.
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEee
Confidence 35889999999999999998655421 36678899999999999988
Q ss_pred ecCCceeEEEEe
Q 016366 378 SCVCNLYIMEFF 389 (390)
Q Consensus 378 ~~~~~~~vi~~~ 389 (390)
.......++.-+
T Consensus 184 ~~~~w~~~~~~~ 195 (205)
T 3grz_A 184 RAGRWIGLAISR 195 (205)
T ss_dssp EETTEEEEEEEE
T ss_pred ccCCEEEEEEec
Confidence 877666666543
No 100
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.45 E-value=7.9e-13 Score=114.68 Aligned_cols=141 Identities=14% Similarity=0.240 Sum_probs=108.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C--CceEEECCCCCCCCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFESVPE- 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~--rv~~~~gd~~~~~p~- 285 (390)
..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. + +++++.+|+.++.+.
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 34555555 557789999999999999999988 678899998 7788777652 3 499999999885554
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 286 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
. |+|++...+|+ ..+....+++++++.|+|||++++....... ..++.+
T Consensus 119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-----------------------------~~~~~~ 168 (194)
T 1dus_A 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQG-----------------------------AKSLAK 168 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTHH-----------------------------HHHHHH
T ss_pred CceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCCC-----------------------------hHHHHH
Confidence 3 99999988875 3455679999999999999999987664210 234566
Q ss_pred HHHHCCCCeeEEEecCCceeEEEEeC
Q 016366 365 LAIAAGFKGINFASCVCNLYIMEFFK 390 (390)
Q Consensus 365 ll~~aGf~~~~~~~~~~~~~vi~~~k 390 (390)
.+++. |..+++.....++.++.++|
T Consensus 169 ~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 169 YMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHH-hcceEEEecCCcEEEEEEee
Confidence 77776 77777777777888887765
No 101
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.45 E-value=1e-12 Score=121.41 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=108.7
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-C-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~-~- 286 (390)
..+++.++ .+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++++ ++++++++|++++++. .
T Consensus 100 ~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~f 177 (276)
T 2b3t_A 100 EQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQF 177 (276)
T ss_dssp HHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCE
T ss_pred HHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCc
Confidence 34445443 3567999999999999999999999999999998 7888877753 4799999999886543 3
Q ss_pred cEEEecc-------------ccccCCh----------hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhh
Q 016366 287 DAILMKW-------------ILHCWDD----------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL 343 (390)
Q Consensus 287 D~i~~~~-------------vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 343 (390)
|+|+++- ++++.|. ....++++++.+.|+|||++++...
T Consensus 178 D~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~------------------ 239 (276)
T 2b3t_A 178 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG------------------ 239 (276)
T ss_dssp EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC------------------
T ss_pred cEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------------
Confidence 9999983 4444331 3457899999999999999887421
Q ss_pred hhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe-cCCceeEEEEeC
Q 016366 344 DVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS-CVCNLYIMEFFK 390 (390)
Q Consensus 344 d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~k 390 (390)
..+.+++.++++++||+.+++.. ..+...++.++|
T Consensus 240 ------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 01367789999999999888765 446666666654
No 102
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.44 E-value=3.2e-13 Score=129.31 Aligned_cols=113 Identities=12% Similarity=0.178 Sum_probs=91.1
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC---------------CCCceEEECC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGN 278 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------------~~rv~~~~gd 278 (390)
+..+++.+. ..+..+|||||||+|..+..++...+..+++++|+ +.+++.|++ .++|+|+++|
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 345666666 77889999999999999999999887767999998 666665543 2689999999
Q ss_pred CCC-CCC----CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCC
Q 016366 279 MFE-SVP----EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP 331 (390)
Q Consensus 279 ~~~-~~p----~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~ 331 (390)
+++ +++ ..|+|+++++++ + ++....|+++++.|||||+|++.|.+.+++.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 998 653 359999988764 3 3455789999999999999999999887653
No 103
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.42 E-value=5.6e-13 Score=114.35 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=82.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C-CceEEECCCCCCCC---C
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFESVP---E 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~-rv~~~~gd~~~~~p---~ 285 (390)
.+++.+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. + ++ ++.+|..+.++ .
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 4455555 56778999999999999999999999999999998 7788877742 3 78 88899876443 2
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 286 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 286 -~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.|+|++...+|+ ..+++++++.|+|||++++.+..
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeec
Confidence 399999999987 37899999999999999986653
No 104
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.41 E-value=1.9e-12 Score=132.84 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=90.2
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC------------CCCceEEECCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------------YAGVEHVGGNMFE- 281 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~------------~~rv~~~~gd~~~- 281 (390)
.+++.+. ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ .++|+++++|+.+
T Consensus 712 ~LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL 790 (950)
T 3htx_A 712 YALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF 790 (950)
T ss_dssp HHHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC
T ss_pred HHHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC
Confidence 3444444 3467899999999999999999998 5678999998 888888765 2579999999988
Q ss_pred CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 282 SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 282 ~~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+.+.+ |+|++..++||++++....+++++++.|+|| .++|.++.
T Consensus 791 p~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 791 DSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp CTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred CcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 65533 9999999999999988888999999999999 77776654
No 105
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.41 E-value=1e-13 Score=122.53 Aligned_cols=145 Identities=14% Similarity=0.052 Sum_probs=92.4
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCC-----CceEEECCCCCCCC-----
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA-----GVEHVGGNMFESVP----- 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~-----rv~~~~gd~~~~~p----- 284 (390)
..+++.++...+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++++- +++++++|+.++++
T Consensus 19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 98 (215)
T 4dzr_A 19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER 98 (215)
T ss_dssp HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence 44555554225678999999999999999999999999999998 88888888641 68888899877443
Q ss_pred -CC-cEEEecccccc------CChhHH------------------HHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHh
Q 016366 285 -EG-DAILMKWILHC------WDDDHC------------------LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 338 (390)
Q Consensus 285 -~~-D~i~~~~vlh~------~~d~~~------------------~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 338 (390)
.. |+|+++-.++. +++... ..++++++++|+|||++++++...
T Consensus 99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------- 167 (215)
T 4dzr_A 99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH----------- 167 (215)
T ss_dssp TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-----------
T ss_pred cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-----------
Confidence 23 99999654433 222221 688999999999999955554321
Q ss_pred hhhhhhhhhhhhcCCCcccCHHHHHHHHH--HCCCCeeEEEecC-CceeEEEEe
Q 016366 339 ETSLLDVLLMTRDGGGRERTKKEYTELAI--AAGFKGINFASCV-CNLYIMEFF 389 (390)
Q Consensus 339 ~~~~~d~~~~~~~~~g~~~t~~e~~~ll~--~aGf~~~~~~~~~-~~~~vi~~~ 389 (390)
...+++.++++ ++||..+++.... +...++.++
T Consensus 168 ------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~ 203 (215)
T 4dzr_A 168 ------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVT 203 (215)
T ss_dssp ------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred ------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence 12456677888 8899888876655 343444443
No 106
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.40 E-value=2.2e-13 Score=122.95 Aligned_cols=100 Identities=18% Similarity=0.264 Sum_probs=77.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC---CCCCC--cEEEe-cc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAILM-KW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~---~~p~~--D~i~~-~~ 293 (390)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4568999999999999999976544 37899998 8888877652 569999999865 35543 99998 55
Q ss_pred c--cccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 294 I--LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 294 v--lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
. .+.+.......+|++++++|||||++++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4 33444445567899999999999999987654
No 107
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.38 E-value=8.3e-13 Score=123.69 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=98.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----C--------CceEEECCCCC---------CCC
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A--------GVEHVGGNMFE---------SVP 284 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~--------rv~~~~gd~~~---------~~p 284 (390)
...+|||||||+|..+..+++.. ..+++++|+ +.+++.|+++ . ++++.+.|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 46799999999998777666543 457899998 8899988863 1 25688888732 234
Q ss_pred CC--cEEEeccccccC-ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCC---C--------cch-HHhhhhh----hhh
Q 016366 285 EG--DAILMKWILHCW-DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP---E--------VSS-AARETSL----LDV 345 (390)
Q Consensus 285 ~~--D~i~~~~vlh~~-~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~---~--------~~~-~~~~~~~----~d~ 345 (390)
.+ |+|+|..++|+. .+++..++|++++++|||||++++..+....-. . ... ...+... .+.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 33 999999999974 444557999999999999999988765311100 0 000 0000000 000
Q ss_pred hhhhhcCCC-------cccCHHHHHHHHHHCCCCeeEEEec
Q 016366 346 LLMTRDGGG-------RERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 346 ~~~~~~~~g-------~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
.. ...+.+ ...+.+++.++++++||+++.....
T Consensus 207 ~~-~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 207 IV-VYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp EE-EBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred cc-eeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 00 000111 2457899999999999999887654
No 108
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.37 E-value=3.4e-12 Score=113.30 Aligned_cols=98 Identities=17% Similarity=0.265 Sum_probs=78.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C--CCCC--cEEEeccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG--DAILMKWI 294 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~--~p~~--D~i~~~~v 294 (390)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ ++++++++|+.+ + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 467899999999999999999999999999998 7888877652 689999999987 4 5543 99998865
Q ss_pred cccCChh------HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 295 LHCWDDD------HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 295 lh~~~d~------~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.++.... ....+|+++.++|+|||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4322211 12479999999999999998854
No 109
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.36 E-value=7.7e-13 Score=121.81 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=79.9
Q ss_pred CcceEEEEcCCccH----HHHHHHhhCC----CCeEEEecc-hHHHhhCCCC----------------------------
Q 016366 227 NVERLVDVGGGFGV----TLSMITSKYP----QIKAVNFDL-PHVVQDAPSY---------------------------- 269 (390)
Q Consensus 227 ~~~~iLDiG~G~G~----~~~~l~~~~p----~~~~~~~Dl-~~~~~~a~~~---------------------------- 269 (390)
+..+|+|+|||+|. ++..+++..| +.+++++|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5555666644 468899998 8888877642
Q ss_pred ---------CCceEEECCCCC-CCC--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 270 ---------AGVEHVGGNMFE-SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 270 ---------~rv~~~~gd~~~-~~p--~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
.+|+|.++|+.+ +++ .. |+|+|.+++++++++...+++++++++|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 258999999998 565 23 999999999999998888999999999999999887
No 110
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.36 E-value=5.2e-13 Score=123.43 Aligned_cols=125 Identities=11% Similarity=0.096 Sum_probs=94.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCC----C---CCceEEECCCCCCCCCC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS----Y---AGVEHVGGNMFESVPEG- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~----~---~rv~~~~gd~~~~~p~~- 286 (390)
.++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ . ++++++.+|+.++++..
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4555555 667789999999999999999998 78899999998 778776654 2 57999999998866643
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
|+|++ +.++.+ ++|+++++.|+|||++++.+.... ..+++.++
T Consensus 180 fD~Vi~-----~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIPDPW--NHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCSCGG--GSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred ccEEEE-----cCcCHH--HHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence 99987 355554 889999999999999998764310 13445667
Q ss_pred HHHCCCCeeEEEe
Q 016366 366 AIAAGFKGINFAS 378 (390)
Q Consensus 366 l~~aGf~~~~~~~ 378 (390)
++++||+.+++..
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 7778888777654
No 111
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.36 E-value=1.5e-12 Score=118.90 Aligned_cols=106 Identities=12% Similarity=0.135 Sum_probs=81.8
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CC------CCC-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SV------PEG- 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~------p~~- 286 (390)
..+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.|++.++++..-.++.+++.+ +. +..
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g--~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALERG--ASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF 111 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence 45666666 6778899999999999999999874 57888888 8899888764211123333333 22 223
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|+|++..++||++.++...++++++++| |||++++...
T Consensus 112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 9999999999999888889999999999 9999998754
No 112
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.35 E-value=1e-11 Score=109.54 Aligned_cols=122 Identities=12% Similarity=0.123 Sum_probs=93.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C-CceEEECCCCCCCC---C
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFESVP---E 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~-rv~~~~gd~~~~~p---~ 285 (390)
.++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. + +++++.+|+.+.++ .
T Consensus 46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 3455555 667789999999999999999988 678999998 8888877752 4 89999999987322 3
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 286 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 286 ~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
.|+|++...+ + .. +++++++.|+|||++++...... +..++.++
T Consensus 123 ~D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~~-----------------------------~~~~~~~~ 166 (204)
T 3njr_A 123 PEAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTLE-----------------------------SETLLTQL 166 (204)
T ss_dssp CSEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSHH-----------------------------HHHHHHHH
T ss_pred CCEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCcc-----------------------------cHHHHHHH
Confidence 4999987744 1 23 89999999999999988654310 24566778
Q ss_pred HHHCCCCeeEEE
Q 016366 366 AIAAGFKGINFA 377 (390)
Q Consensus 366 l~~aGf~~~~~~ 377 (390)
+++.||++.++.
T Consensus 167 l~~~g~~i~~i~ 178 (204)
T 3njr_A 167 HARHGGQLLRID 178 (204)
T ss_dssp HHHHCSEEEEEE
T ss_pred HHhCCCcEEEEE
Confidence 888898877754
No 113
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.35 E-value=7.8e-12 Score=110.82 Aligned_cols=137 Identities=14% Similarity=0.157 Sum_probs=95.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hH----HHhhCCCCCCceEEECCCCCC-----CCCC-cEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFES-----VPEG-DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~----~~~~a~~~~rv~~~~gd~~~~-----~p~~-D~i~~~~ 293 (390)
..++.+|||||||+|.++..+++..++.+++++|+ +. +++.+++..++.++.+|+.++ ++.. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45678999999999999999999987778999998 54 445555567899999998763 2333 999987
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHH----HHHHHHC
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY----TELAIAA 369 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~----~~ll~~a 369 (390)
+.+ ..+...+|++++++|||||++++.-... ..+ . ..+.+++ .+.++++
T Consensus 134 ~~~---~~~~~~~l~~~~r~LkpgG~l~i~~~~~--------------~~~---------~-~~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKEKGEVVIMVKAR--------------SID---------S-TAEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEEEEEEEEEEEHH--------------HHC---------T-TSCHHHHHHHHHHHHHTT
T ss_pred ccC---hhHHHHHHHHHHHHhCCCCEEEEEEecC--------------Ccc---------c-cCCHHHHHHHHHHHHHhh
Confidence 322 2334456999999999999999873221 000 0 0122332 1237888
Q ss_pred CCCeeEEEecC---CceeEEEEeC
Q 016366 370 GFKGINFASCV---CNLYIMEFFK 390 (390)
Q Consensus 370 Gf~~~~~~~~~---~~~~vi~~~k 390 (390)
|++++..... ..+.++.++|
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEEc
Confidence 9999998774 3556666553
No 114
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.35 E-value=1.5e-12 Score=118.57 Aligned_cols=128 Identities=14% Similarity=0.160 Sum_probs=100.8
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~ 285 (390)
...++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. ++++++.+|+.+.++.
T Consensus 82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 345566665 677889999999999999999999 88999999998 7888887753 4599999999887665
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHH
Q 016366 286 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 363 (390)
Q Consensus 286 ~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~ 363 (390)
. |+|++ +.++.. .+|++++++|+|||++++..+... ...++.
T Consensus 161 ~~~D~v~~-----~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 204 (255)
T 3mb5_A 161 ENVDHVIL-----DLPQPE--RVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLH 204 (255)
T ss_dssp CSEEEEEE-----CSSCGG--GGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred CCcCEEEE-----CCCCHH--HHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHH
Confidence 4 99987 345544 789999999999999998754310 144567
Q ss_pred HHHHHCC--CCeeEEEec
Q 016366 364 ELAIAAG--FKGINFASC 379 (390)
Q Consensus 364 ~ll~~aG--f~~~~~~~~ 379 (390)
++++++| |..+++...
T Consensus 205 ~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 205 EKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHTGGGBSCCEEECC
T ss_pred HHHHHcCCCccccEEEEE
Confidence 7888899 988877654
No 115
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=115.57 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=84.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCCC--cEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--DAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~ 297 (390)
.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 46689999999999999999998764 7888887 7787776652 689999999988 66643 99999999987
Q ss_pred CC-------------hhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 298 WD-------------DDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 298 ~~-------------d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
+. .....++|++++++|+|||++++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 65 3456799999999999999999988653
No 116
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.33 E-value=5.5e-12 Score=112.90 Aligned_cols=133 Identities=12% Similarity=0.088 Sum_probs=94.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCC----CCCCceEEECCCCCC--CC--CC--cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAP----SYAGVEHVGGNMFES--VP--EG--DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~----~~~rv~~~~gd~~~~--~p--~~--D~i~~~ 292 (390)
++++.+|||+|||+|.++..+++. .|+-+++++|+ +.+++.++ +.+++..+.+|..++ .+ .. |+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 678899999999999999999986 58889999998 77776554 457899999998762 12 22 888764
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
.. +.. +...+++++++.|||||+++|+......+ ... .. ....++..+.|+++||+
T Consensus 155 ~~--~~~--~~~~~l~~~~r~LKpGG~lvI~ik~r~~d--------------~~~-----p~-~~~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 155 VA--QPE--QAAIVVRNARFFLRDGGYMLMAIKARSID--------------VTT-----EP-SEVYKREIKTLMDGGLE 210 (233)
T ss_dssp CC--CTT--HHHHHHHHHHHHEEEEEEEEEEEECCHHH--------------HHT-----CC-CHHHHHHHHHHHHTTCC
T ss_pred cc--CCh--hHHHHHHHHHHhccCCCEEEEEEecccCC--------------CCC-----Ch-HHHHHHHHHHHHHCCCE
Confidence 32 222 34578999999999999999875432110 000 00 00123445678899999
Q ss_pred eeEEEecCC
Q 016366 373 GINFASCVC 381 (390)
Q Consensus 373 ~~~~~~~~~ 381 (390)
+++...+..
T Consensus 211 l~e~i~L~p 219 (233)
T 4df3_A 211 IKDVVHLDP 219 (233)
T ss_dssp EEEEEECTT
T ss_pred EEEEEccCC
Confidence 999887753
No 117
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.32 E-value=5.1e-12 Score=113.68 Aligned_cols=141 Identities=11% Similarity=0.015 Sum_probs=96.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hH----HHhhCCCCCCceEEECCCCCC--CC--C-C-cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFES--VP--E-G-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~----~~~~a~~~~rv~~~~gd~~~~--~p--~-~-D~i~~~ 292 (390)
+.+..+|||+|||+|.++..+++.+ |..+++++|+ +. +++.+++.++++++.+|+.++ ++ . . |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 7789999998 44 455555568899999999872 22 2 3 999985
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
.. ..+....+++++++.|+|||++++.-........... .. +-.++ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~----------~~---------~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASA----------EA---------VFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCH----------HH---------HHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCH----------HH---------HHHHH-HHHHHHCCCc
Confidence 44 2233456799999999999999984221100000000 00 00123 5889999999
Q ss_pred eeEEEecCCc---eeEEEEe
Q 016366 373 GINFASCVCN---LYIMEFF 389 (390)
Q Consensus 373 ~~~~~~~~~~---~~vi~~~ 389 (390)
++++..+..+ ..++.++
T Consensus 211 ~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 211 PQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp EEEEEECTTTSSSEEEEEEE
T ss_pred eEEEEecCCccCCcEEEEEE
Confidence 9997766532 4544443
No 118
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.31 E-value=4.7e-12 Score=109.52 Aligned_cols=121 Identities=21% Similarity=0.178 Sum_probs=93.5
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC--C
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--G 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~--~ 286 (390)
.+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++. ++++++.+|+.++++. .
T Consensus 24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 3444455 5677899999999999999999987 68899998 7788777652 5799999998763332 3
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
|+|++..+++++ ..+++++.+.|+|||++++...... +..++.++
T Consensus 101 ~D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~~~~-----------------------------~~~~~~~~ 146 (192)
T 1l3i_A 101 IDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAILLE-----------------------------TKFEAMEC 146 (192)
T ss_dssp EEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECBHH-----------------------------HHHHHHHH
T ss_pred CCEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEecCcc-----------------------------hHHHHHHH
Confidence 999999887653 5889999999999999998654210 14567888
Q ss_pred HHHCCCCee
Q 016366 366 AIAAGFKGI 374 (390)
Q Consensus 366 l~~aGf~~~ 374 (390)
+++.||.+.
T Consensus 147 l~~~g~~~~ 155 (192)
T 1l3i_A 147 LRDLGFDVN 155 (192)
T ss_dssp HHHTTCCCE
T ss_pred HHHCCCceE
Confidence 999999543
No 119
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.31 E-value=2.3e-12 Score=115.45 Aligned_cols=114 Identities=12% Similarity=0.147 Sum_probs=88.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCC--CCC-CC--cEEEeccccccC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE--SVP-EG--DAILMKWILHCW 298 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~--~~p-~~--D~i~~~~vlh~~ 298 (390)
.+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++++|+.+ +++ .+ |+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 45689999999999999999998 468899998 888888876 4789999999965 444 33 999987
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEe
Q 016366 299 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 378 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 378 (390)
.+ ...+|++++++|+|||+++.. +...+.+++.++++++||++.++..
T Consensus 119 ~~--~~~~l~~~~~~LkpgG~l~~~------------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 119 RG--PTSVILRLPELAAPDAHFLYV------------------------------GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp SC--CSGGGGGHHHHEEEEEEEEEE------------------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred CC--HHHHHHHHHHHcCCCcEEEEe------------------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 22 237899999999999998800 1112456788888999998877654
Q ss_pred c
Q 016366 379 C 379 (390)
Q Consensus 379 ~ 379 (390)
.
T Consensus 167 ~ 167 (226)
T 3m33_A 167 V 167 (226)
T ss_dssp E
T ss_pred e
Confidence 3
No 120
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.30 E-value=1.1e-11 Score=111.05 Aligned_cols=128 Identities=17% Similarity=0.158 Sum_probs=94.9
Q ss_pred cCCcceEEEEcCC-ccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCC--CCCCCC--cEEEecc
Q 016366 225 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMF--ESVPEG--DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~--~~~p~~--D~i~~~~ 293 (390)
..+..+|||+||| +|.++..+++.. ..+++++|+ +.+++.++++ .+++++.+|+. .+++.. |+|+++-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 3567899999999 999999999986 678899998 8888887752 27999999964 355543 9999987
Q ss_pred ccccCChhH-----------------HHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcc
Q 016366 294 ILHCWDDDH-----------------CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 356 (390)
Q Consensus 294 vlh~~~d~~-----------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 356 (390)
.+++.++.. ..++|+++.+.|+|||++++......
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------------
Confidence 776654322 26899999999999999998633200
Q ss_pred cCHHHHHHHHHHCCCCeeEEEecCC
Q 016366 357 RTKKEYTELAIAAGFKGINFASCVC 381 (390)
Q Consensus 357 ~t~~e~~~ll~~aGf~~~~~~~~~~ 381 (390)
...+++.+++++.||.+..+....+
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred hHHHHHHHHHHHcCCceEEEEecCC
Confidence 1256778899999998777655443
No 121
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.30 E-value=3.2e-11 Score=107.89 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=96.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhh----CCCCCCceEEECCCCCC-----CCCC-cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQD----APSYAGVEHVGGNMFES-----VPEG-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~----a~~~~rv~~~~gd~~~~-----~p~~-D~i~~~ 292 (390)
+.+..+|||+|||+|.++..+++.. |+.+++++|. +.+++. +++.++++++.+|+.++ .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999885 6678999998 654443 44457899999999872 2333 999976
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
.. .+ .....+++++++.|+|||++++. .......... .......+++.++ +++ |+
T Consensus 151 ~~---~~-~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~------------------~~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA---QP-TQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK------------------EPEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC---ST-THHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS------------------CHHHHHHHHHHHH-HTT-SE
T ss_pred CC---CH-hHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC------------------ChhhhhHHHHHHH-Hhh-ce
Confidence 54 22 23345699999999999999987 2211100000 0001135677777 777 99
Q ss_pred eeEEEecCCc---eeEEEEeC
Q 016366 373 GINFASCVCN---LYIMEFFK 390 (390)
Q Consensus 373 ~~~~~~~~~~---~~vi~~~k 390 (390)
+++...+..+ ..++.++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred eeeEeccCcccCCCEEEEEEe
Confidence 9998887644 55666554
No 122
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.29 E-value=7e-12 Score=117.93 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=81.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------------CCceEEECCCCC-C----CC--
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------------AGVEHVGGNMFE-S----VP-- 284 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------------~rv~~~~gd~~~-~----~p-- 284 (390)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++++|+.+ + ++
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 36679999999999999999874 5678999998 7888877642 268999999987 4 42
Q ss_pred C-C-cEEEeccccccC--ChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 285 E-G-DAILMKWILHCW--DDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 285 ~-~-D~i~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
. . |+|++..++|+. +.++...+|++++++|+|||.+++..+.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 2 3 999999999987 3455679999999999999999987663
No 123
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.29 E-value=8.7e-12 Score=107.81 Aligned_cols=133 Identities=12% Similarity=0.115 Sum_probs=90.3
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC--CCCC-C-cEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--SVPE-G-DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~--~~p~-~-D~i~~~~ 293 (390)
..+..+|||+|||+|.++..++++ ..+++++|+ +.+++.++++ ++++++.+|+.. +.+. . |+|++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 356789999999999999999988 678999998 8888888753 679999977765 1333 3 9998763
Q ss_pred -ccccC------ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 294 -ILHCW------DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 294 -vlh~~------~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
.+++. ..+....+|+++++.|+|||++++........... . .....+|.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--~-------------------~~~~~~~~~~l 156 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDM--E-------------------KDAVLEYVIGL 156 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CH--H-------------------HHHHHHHHHHS
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHH--H-------------------HHHHHHHHHhC
Confidence 32220 22455688999999999999999876542221000 0 01134455555
Q ss_pred HHCCCCeeEEEecC
Q 016366 367 IAAGFKGINFASCV 380 (390)
Q Consensus 367 ~~aGf~~~~~~~~~ 380 (390)
...+|.+.+.....
T Consensus 157 ~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 157 DQRVFTAMLYQPLN 170 (185)
T ss_dssp CTTTEEEEEEEESS
T ss_pred CCceEEEEEehhhc
Confidence 66788888877664
No 124
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.28 E-value=4.2e-12 Score=115.96 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=95.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---C--CceEEECCCCCCCCC-C-cEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---A--GVEHVGGNMFESVPE-G-DAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~--rv~~~~gd~~~~~p~-~-D~i~~~~vlh~ 297 (390)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ . .+++..+|+.+.++. . |+|+++...|+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAEL 196 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHHH
Confidence 4568999999999999999988766 8888887 7888877652 1 289999998765443 3 99998755442
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
...+++++++.|+|||++++.+.... +.+++.++++++||+++++.
T Consensus 197 -----~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 197 -----HAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp -----HHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred -----HHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHHHHHHHHCCCEEEEEe
Confidence 46899999999999999998765421 26788999999999999887
Q ss_pred ecCCce
Q 016366 378 SCVCNL 383 (390)
Q Consensus 378 ~~~~~~ 383 (390)
....-.
T Consensus 243 ~~~~W~ 248 (254)
T 2nxc_A 243 AEGEWV 248 (254)
T ss_dssp EETTEE
T ss_pred ccCCeE
Confidence 765433
No 125
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.28 E-value=6.2e-12 Score=117.87 Aligned_cols=129 Identities=14% Similarity=0.178 Sum_probs=94.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCC-CC--CC-C-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE-SV--PE-G-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~-~~--p~-~-D~i 289 (390)
.++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .++++++.+|+.+ .. +. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998877889999998 788877664 2689999999876 22 33 3 999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 290 LMKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 290 ~~~~vlh~~~d~~~--~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
++....+..+.... .+++++++++|+|||++++..... +. ......++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~-----------~~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WL-----------DLELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TT-----------CHHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------cc-----------chHHHHHHHHHHH
Confidence 99877766554322 589999999999999998863210 00 0113677889999
Q ss_pred HCCCCeeEEEec
Q 016366 368 AAGFKGINFASC 379 (390)
Q Consensus 368 ~aGf~~~~~~~~ 379 (390)
++||..+++...
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998887654
No 126
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.28 E-value=3.8e-12 Score=109.21 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=77.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C-CceEEECCCCC-CCCCC-cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFE-SVPEG-DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~-rv~~~~gd~~~-~~p~~-D~i~~~~vl 295 (390)
..+.+|||||||+|.++..++...|+++++++|+ +.+++.++++ . ++++ .|..+ +.+.. |+|+...++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 4678999999999999999999999999999999 8899988863 1 3444 66665 33333 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
|++++ ....+.++++.|+|||.++-.+
T Consensus 126 HlL~~--~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 126 PVLKQ--QDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHHH--TTCCHHHHHHTCEEEEEEEEEE
T ss_pred Hhhhh--hHHHHHHHHHHhCCCCEEEEeC
Confidence 99933 3467779999999999877655
No 127
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.28 E-value=3.3e-12 Score=109.69 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=87.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CCceEEECCCCC-CC---CCC--cEEEecccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SV---PEG--DAILMKWIL 295 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~-~~---p~~--D~i~~~~vl 295 (390)
..++.+|||||||. +.+|+ +.|++.++++ .+++++.+|+.+ +. +.+ |+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56788999999996 22776 7888888764 369999999987 54 443 999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCee
Q 016366 296 HCW-DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 374 (390)
Q Consensus 296 h~~-~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 374 (390)
|++ ++.. ++|++++++|||||++++.++...... .....++.++|.++|+++|| +.
T Consensus 74 ~~~~~~~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 74 GSTTLHSA--EILAEIARILRPGGCLFLKEPVETAVD--------------------NNSKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp TCCCCCCH--HHHHHHHHHEEEEEEEEEEEEEESSSC--------------------SSSSSCCHHHHHHHHHHTTC-EE
T ss_pred hhcccCHH--HHHHHHHHHCCCCEEEEEEcccccccc--------------------cccccCCHHHHHHHHHHCCC-cE
Confidence 999 7654 899999999999999999766432210 01223578999999999999 44
Q ss_pred EEEe
Q 016366 375 NFAS 378 (390)
Q Consensus 375 ~~~~ 378 (390)
+..
T Consensus 131 -~~~ 133 (176)
T 2ld4_A 131 -VKE 133 (176)
T ss_dssp -EEE
T ss_pred -eec
Confidence 443
No 128
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.28 E-value=8.6e-12 Score=113.62 Aligned_cols=127 Identities=14% Similarity=0.165 Sum_probs=98.1
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP 284 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p 284 (390)
...++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. ++++++.+|+.+ +++
T Consensus 85 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 85 ASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 345666666 677889999999999999999998 67889999998 7787777642 689999999987 476
Q ss_pred CC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHH
Q 016366 285 EG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 362 (390)
Q Consensus 285 ~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~ 362 (390)
.. |+|++ ++++.. .+|+++.++|+|||++++.++... ...++
T Consensus 164 ~~~~D~v~~-----~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~ 207 (258)
T 2pwy_A 164 EAAYDGVAL-----DLMEPW--KVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLEL 207 (258)
T ss_dssp TTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHH
T ss_pred CCCcCEEEE-----CCcCHH--HHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHH
Confidence 53 99987 345544 789999999999999999775310 12345
Q ss_pred HHHHHHCCCCeeEEEe
Q 016366 363 TELAIAAGFKGINFAS 378 (390)
Q Consensus 363 ~~ll~~aGf~~~~~~~ 378 (390)
.+.++++||..+++..
T Consensus 208 ~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 208 VRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHTTTTEEEEEEEE
T ss_pred HHHHHHCCCceEEEEE
Confidence 6667778988776654
No 129
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.28 E-value=5.7e-11 Score=106.45 Aligned_cols=150 Identities=17% Similarity=0.124 Sum_probs=98.8
Q ss_pred HHHHHHhh--ccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHH----HhhCCCCCCceEEECCCCCC-----
Q 016366 216 ERILEHYE--GFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHV----VQDAPSYAGVEHVGGNMFES----- 282 (390)
Q Consensus 216 ~~l~~~~~--~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~----~~~a~~~~rv~~~~gd~~~~----- 282 (390)
..++..++ .+.++.+|||+|||+|.++..+++. .|+.+++++|+ +.+ ++.++++.++.++.+|+..+
T Consensus 63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~ 142 (232)
T 3id6_C 63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKS 142 (232)
T ss_dssp HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTT
T ss_pred HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhc
Confidence 34444443 1567889999999999999999986 46789999998 655 44555568899999999763
Q ss_pred CCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHH
Q 016366 283 VPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 361 (390)
Q Consensus 283 ~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e 361 (390)
+... |+|++.... +++ ...++..+++.|||||++++...... .|... .. .-..++
T Consensus 143 ~~~~~D~I~~d~a~---~~~-~~il~~~~~~~LkpGG~lvisik~~~--------------~d~t~-----~~-~e~~~~ 198 (232)
T 3id6_C 143 VVENVDVLYVDIAQ---PDQ-TDIAIYNAKFFLKVNGDMLLVIKARS--------------IDVTK-----DP-KEIYKT 198 (232)
T ss_dssp TCCCEEEEEECCCC---TTH-HHHHHHHHHHHEEEEEEEEEEEC---------------------C-----CS-SSSTTH
T ss_pred cccceEEEEecCCC---hhH-HHHHHHHHHHhCCCCeEEEEEEccCC--------------cccCC-----CH-HHHHHH
Confidence 1223 999887543 333 23345666779999999998732211 11100 01 111234
Q ss_pred HHHHHHHCCCCeeEEEecCC---ceeEEEEe
Q 016366 362 YTELAIAAGFKGINFASCVC---NLYIMEFF 389 (390)
Q Consensus 362 ~~~ll~~aGf~~~~~~~~~~---~~~vi~~~ 389 (390)
..+.|+++||++.+...+.. .+.++.++
T Consensus 199 ~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 199 EVEKLENSNFETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp HHHHHHHTTEEEEEEEECTTTCSSCEEEEEE
T ss_pred HHHHHHHCCCEEEEEeccCCCcCceEEEEEE
Confidence 56677899999999988853 35555554
No 130
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.27 E-value=1e-11 Score=108.42 Aligned_cols=102 Identities=12% Similarity=0.159 Sum_probs=80.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-C-CCC-C-cEEEe
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S-VPE-G-DAILM 291 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~-~p~-~-D~i~~ 291 (390)
..+..+|||+|||+|.++..+++++ |+.+++++|+ +.+++.+++. ++++++++|+.+ + ... . |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999986 6779999998 7888887753 579999999876 3 333 3 99998
Q ss_pred cccccc-------CChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 292 KWILHC-------WDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 292 ~~vlh~-------~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
...+.. .......++++++.+.|+|||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 865511 12234557999999999999999988754
No 131
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.27 E-value=4.8e-12 Score=114.42 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=92.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCC----CC-cEEEec
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP----EG-DAILMK 292 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p----~~-D~i~~~ 292 (390)
.+..+|||||||+|..+..++...|+.+++++|+ +.+++.+++. ++|+++++|+.+ +.+ .. |+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4568999999999999999999889999999998 7788877652 479999999876 532 23 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
.+ .+ ...+++.+++.|+|||++++...... . ...+++.+.+++.||+
T Consensus 149 ~~----~~--~~~~l~~~~~~LkpgG~l~~~~g~~~-------~--------------------~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKKNGLFVALKAASA-------E--------------------EELNAGKKAITTLGGE 195 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEEEEEEEEEECC-C-------H--------------------HHHHHHHHHHHHTTEE
T ss_pred cc----CC--HHHHHHHHHHhcCCCCEEEEEeCCCc-------h--------------------HHHHHHHHHHHHcCCe
Confidence 63 33 44899999999999999988632110 0 0134567889999999
Q ss_pred eeEEEe
Q 016366 373 GINFAS 378 (390)
Q Consensus 373 ~~~~~~ 378 (390)
+.++..
T Consensus 196 ~~~~~~ 201 (240)
T 1xdz_A 196 LENIHS 201 (240)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 887754
No 132
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.27 E-value=9.4e-12 Score=119.93 Aligned_cols=109 Identities=22% Similarity=0.262 Sum_probs=87.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---------CCceEEECCCCCCCCCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFESVPEG 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---------~rv~~~~gd~~~~~p~~ 286 (390)
.+++.++ .....+|||+|||+|.++..+++++|..+++++|+ +.+++.++++ .+++++.+|++++++..
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566666 44558999999999999999999999999999998 7888887752 25888999999876653
Q ss_pred --cEEEecccccc---CChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 --DAILMKWILHC---WDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 --D~i~~~~vlh~---~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+|+++-.+|+ ..+....++|+++++.|+|||+++++...
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 99999999985 34555568999999999999999996543
No 133
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.27 E-value=5.9e-13 Score=121.40 Aligned_cols=145 Identities=8% Similarity=0.011 Sum_probs=96.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC----CCC----CC-cEE
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE----SVP----EG-DAI 289 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~----~~p----~~-D~i 289 (390)
+..+|||+|||+|.++..++++.|+.+++++|+ +.+++.|+++ ++++++++|+.+ +++ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999988899999998 8888887752 469999999643 444 23 999
Q ss_pred EeccccccCCh-------------hHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcc
Q 016366 290 LMKWILHCWDD-------------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 356 (390)
Q Consensus 290 ~~~~vlh~~~d-------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 356 (390)
+++-.+|.... +....++.+++++|+|||.+.+++.+.... ... .....+.. ...+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~------~~~--l~~~g~~~-~~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS------LQL--KKRLRWYS-CMLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH------HHH--GGGBSCEE-EEESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH------Hhc--ccceEEEE-ECCCCh
Confidence 99876665431 112356788999999999988876543210 000 00000111 112444
Q ss_pred cCHHHHHHHHHHCCCCeeEEEecC
Q 016366 357 RTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 357 ~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
.+.+++.++++++||+.+++....
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEEe
Confidence 556899999999999998877664
No 134
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.26 E-value=1.5e-11 Score=105.57 Aligned_cols=121 Identities=10% Similarity=0.086 Sum_probs=93.1
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC--C
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE--G 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~--~ 286 (390)
..+++.++ ..+..+|||+|||+|.++..+++ +..+++++|+ +.+++.+++. ++++++.+|+.++++. .
T Consensus 25 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (183)
T 2yxd_A 25 AVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF 101 (183)
T ss_dssp HHHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence 34455555 56678999999999999999998 7788999998 7888877753 5799999999875553 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 366 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll 366 (390)
|+|++..+ .+ ...+++++++. |||++++.+.... +..++.+++
T Consensus 102 D~i~~~~~----~~--~~~~l~~~~~~--~gG~l~~~~~~~~-----------------------------~~~~~~~~l 144 (183)
T 2yxd_A 102 NKAFIGGT----KN--IEKIIEILDKK--KINHIVANTIVLE-----------------------------NAAKIINEF 144 (183)
T ss_dssp SEEEECSC----SC--HHHHHHHHHHT--TCCEEEEEESCHH-----------------------------HHHHHHHHH
T ss_pred cEEEECCc----cc--HHHHHHHHhhC--CCCEEEEEecccc-----------------------------cHHHHHHHH
Confidence 99999988 22 34889999988 9999998764310 145568889
Q ss_pred HHCCCCeeEE
Q 016366 367 IAAGFKGINF 376 (390)
Q Consensus 367 ~~aGf~~~~~ 376 (390)
+++||.+..+
T Consensus 145 ~~~g~~~~~~ 154 (183)
T 2yxd_A 145 ESRGYNVDAV 154 (183)
T ss_dssp HHTTCEEEEE
T ss_pred HHcCCeEEEE
Confidence 9999876654
No 135
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.26 E-value=1.3e-11 Score=113.91 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=78.2
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCCCCcEEEeccccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEGDAILMKWILH 296 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p~~D~i~~~~vlh 296 (390)
..++.+|||||||+|.++..++.+.++.+++++|+ +.+++.|++. ++|+++++|+.+ +-...|+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 67889999999999988777667778999999998 8899988863 689999999987 4112399998654
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 297 CWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 297 ~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.++ ..++++++++.|||||++++.+
T Consensus 198 -~~d--~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 198 -AEP--KRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp -CSC--HHHHHHHHHHHCCTTCEEEEEE
T ss_pred -ccC--HHHHHHHHHHHcCCCcEEEEEc
Confidence 344 3489999999999999999865
No 136
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.25 E-value=3.8e-12 Score=113.50 Aligned_cols=99 Identities=10% Similarity=0.178 Sum_probs=77.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCC----CCCC--cEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES----VPEG--DAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~----~p~~--D~i~~~~ 293 (390)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++++|+.+. ++.+ |.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 567999999999999999999999999999998 778777654 25799999998762 5554 9998875
Q ss_pred ccccCChhHH------HHHHHHHHHhCCCCcEEEEEec
Q 016366 294 ILHCWDDDHC------LRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 294 vlh~~~d~~~------~~~L~~~~~~L~pgG~lli~e~ 325 (390)
...+...... ..+++.+++.|+|||++++...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 4432222111 1589999999999999998654
No 137
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.25 E-value=1e-11 Score=110.31 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=77.1
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-C--CCCC--cEEEeccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-S--VPEG--DAILMKWI 294 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~--~p~~--D~i~~~~v 294 (390)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ + ++.+ |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999998 778887764 2679999999986 3 5543 98876544
Q ss_pred cccCChh------HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 295 LHCWDDD------HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 295 lh~~~d~------~~~~~L~~~~~~L~pgG~lli~e 324 (390)
..+.... ....+|+++++.|+|||.+++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 3221110 02478999999999999998864
No 138
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.25 E-value=1.3e-11 Score=112.90 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=78.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCChhH
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 302 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~ 302 (390)
+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++...-.++.+|+.+ +++.+ |+|++.++++++.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5679999999999999999987 457899998 8888887764222389999987 66554 999998876666332
Q ss_pred HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 303 CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 303 ~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
...+|++++++|+|||++++..+.
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 558999999999999999987654
No 139
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.24 E-value=6.2e-12 Score=119.96 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=88.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCCCC-cE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEG-DA 288 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p~~-D~ 288 (390)
..+++.++ .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ ..++++.+|+.+..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 44566664 34467999999999999999999999889999998 7788877752 34778999998744444 99
Q ss_pred EEeccccccC---ChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 289 ILMKWILHCW---DDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 289 i~~~~vlh~~---~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+++.++|+. ..+...++|++++++|+|||+++++...
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 9999999862 4455679999999999999999997764
No 140
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.24 E-value=4.2e-11 Score=110.67 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=97.4
Q ss_pred HHHHHHhhccC-CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhh-CCCCCCceEEE-CCCCC----CCCC--
Q 016366 216 ERILEHYEGFQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD-APSYAGVEHVG-GNMFE----SVPE-- 285 (390)
Q Consensus 216 ~~l~~~~~~~~-~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~-a~~~~rv~~~~-gd~~~----~~p~-- 285 (390)
..+++.+. .. ...+|||||||+|.++..+++. +..+++++|+ +.|++. +++.+++.... .|+.. .+|.
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 45566665 33 4569999999999999998887 4568999998 778877 34445655443 34322 2343
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe-cccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 286 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN-SIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 286 ~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
.|+|++..++|++ ..+|.+++++|+|||++++.. +.+.-.+. .........|- ....++.+++.+
T Consensus 152 fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~--~~~~~G~vrd~-------~~~~~~~~~v~~ 217 (291)
T 3hp7_A 152 PSFASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGRE--QIGKNGIVRES-------SIHEKVLETVTA 217 (291)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCGG--GCC-CCCCCCH-------HHHHHHHHHHHH
T ss_pred CCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccChh--hcCCCCccCCH-------HHHHHHHHHHHH
Confidence 3999998888865 378999999999999998852 21111100 00000000000 011235789999
Q ss_pred HHHHCCCCeeEEEecC
Q 016366 365 LAIAAGFKGINFASCV 380 (390)
Q Consensus 365 ll~~aGf~~~~~~~~~ 380 (390)
+++++||++..+...+
T Consensus 218 ~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 218 FAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHTTEEEEEEEECS
T ss_pred HHHHCCCEEEEEEECC
Confidence 9999999998887654
No 141
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.23 E-value=5.3e-11 Score=105.94 Aligned_cols=129 Identities=13% Similarity=0.046 Sum_probs=100.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC---CcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---GDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~---~D~i~~~~v 294 (390)
+++.+|+|||||+|.++..+++.+|..+++++|+ +.+++.|+++ ++|+++.+|.+++++. .|+|+...+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 3567999999999999999999999889999998 7888887752 4799999999886652 499887654
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCee
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 374 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 374 (390)
..+....+|..+.+.|+|+|++++.-.. ..+.++++|.+.||.++
T Consensus 94 ----Gg~~i~~Il~~~~~~L~~~~~lVlq~~~-------------------------------~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 94 ----GGRLIARILEEGLGKLANVERLILQPNN-------------------------------REDDLRIWLQDHGFQIV 138 (225)
T ss_dssp ----CHHHHHHHHHHTGGGCTTCCEEEEEESS-------------------------------CHHHHHHHHHHTTEEEE
T ss_pred ----ChHHHHHHHHHHHHHhCCCCEEEEECCC-------------------------------CHHHHHHHHHHCCCEEE
Confidence 3344678999999999999998862220 25667899999999998
Q ss_pred EEEec---CCceeEEEEe
Q 016366 375 NFASC---VCNLYIMEFF 389 (390)
Q Consensus 375 ~~~~~---~~~~~vi~~~ 389 (390)
+..-+ .-++.++.+.
T Consensus 139 ~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 139 AESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 87543 2345566553
No 142
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.23 E-value=4.2e-11 Score=109.50 Aligned_cols=124 Identities=9% Similarity=0.117 Sum_probs=93.5
Q ss_pred cC-CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-C--CCC-C-cEEE
Q 016366 225 FQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S--VPE-G-DAIL 290 (390)
Q Consensus 225 ~~-~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~--~p~-~-D~i~ 290 (390)
.. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.++++ ++++++++|+.+ + ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999999775 8999998 7888877752 479999999987 3 333 3 9999
Q ss_pred eccccccC------------------ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcC
Q 016366 291 MKWILHCW------------------DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG 352 (390)
Q Consensus 291 ~~~vlh~~------------------~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 352 (390)
++-.++.. .......+++.+.+.|+|||+++++.. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~----------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P----------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------------
Confidence 97554332 113345799999999999999998421 1
Q ss_pred CCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 353 GGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 353 ~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
....++.+++++.||...++.++
T Consensus 179 ----~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ----ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ----TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----HHHHHHHHHHHHCCCceEEEEEe
Confidence 02456677888899988877655
No 143
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.23 E-value=5.8e-11 Score=103.93 Aligned_cols=106 Identities=18% Similarity=0.199 Sum_probs=80.6
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC--CCeEEEecchHHHhhCCCCCCceEEECCCCC-C---------
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP--QIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-S--------- 282 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p--~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~--------- 282 (390)
..++.+.+..+.+..+|||||||+|.++..+++++| +.+++++|+..+ ...++++++++|+.+ +
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC-----
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhccccc
Confidence 345566655345678999999999999999999998 689999998543 124679999999987 4
Q ss_pred ----------------CCC-C-cEEEeccccccCC----hhH-----HHHHHHHHHHhCCCCcEEEEEe
Q 016366 283 ----------------VPE-G-DAILMKWILHCWD----DDH-----CLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 283 ----------------~p~-~-D~i~~~~vlh~~~----d~~-----~~~~L~~~~~~L~pgG~lli~e 324 (390)
++. . |+|++...+|+.. +.. ..++|++++++|+|||++++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 343 3 9999988877632 221 1248999999999999998744
No 144
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.23 E-value=3.3e-11 Score=102.62 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=83.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecchHHHhhCCCCCCceEEECCCCC-C--------CCCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-S--------VPEG 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~--------~p~~ 286 (390)
.+++.+....+..+|||+|||+|.++..+++.+ |+.+++++|+..+++ .++++++.+|+.+ + ++..
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCC
Confidence 455555434567799999999999999999984 778999999844433 2679999999988 5 5543
Q ss_pred --cEEEeccccccCChhH---------HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 --DAILMKWILHCWDDDH---------CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~---------~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+|++..++|+..... ...+++++.+.|+|||.+++.+..
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999999998776441 148899999999999999987654
No 145
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.23 E-value=1.4e-11 Score=113.72 Aligned_cols=128 Identities=17% Similarity=0.234 Sum_probs=97.6
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~ 285 (390)
...++..++ ..+..+|||+|||+|.++..++++ .|..+++++|+ +.+++.++++ ++++++.+|+.+.++.
T Consensus 101 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 101 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 345666666 677789999999999999999998 68899999998 7888877653 4799999999876654
Q ss_pred -C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHH
Q 016366 286 -G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 363 (390)
Q Consensus 286 -~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~ 363 (390)
. |+|++. .++.. .+|+++.++|+|||++++.+.... ...++.
T Consensus 180 ~~~D~V~~~-----~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~-----------------------------~~~~~~ 223 (277)
T 1o54_A 180 KDVDALFLD-----VPDPW--NYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETL 223 (277)
T ss_dssp CSEEEEEEC-----CSCGG--GTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred CccCEEEEC-----CcCHH--HHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3 999873 45443 789999999999999998764310 123455
Q ss_pred HHHHHCCCCeeEEEec
Q 016366 364 ELAIAAGFKGINFASC 379 (390)
Q Consensus 364 ~ll~~aGf~~~~~~~~ 379 (390)
+.++++||..+++...
T Consensus 224 ~~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 224 KKLQELPFIRIEVWES 239 (277)
T ss_dssp HHHHHSSEEEEEEECC
T ss_pred HHHHHCCCceeEEEEE
Confidence 6677788887766543
No 146
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.22 E-value=1.3e-11 Score=110.95 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=89.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCc--------eEEE-CCCCCCCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGV--------EHVG-GNMFESVP 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv--------~~~~-gd~~~~~p 284 (390)
..+++.++......+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. +++ ++.. .|+..+.+
T Consensus 26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (232)
T 3opn_A 26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP 104 (232)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC
T ss_pred HHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC
Confidence 3455666522345699999999999999999883 348999998 7787775542 333 2222 22222111
Q ss_pred CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHH
Q 016366 285 EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 364 (390)
Q Consensus 285 ~~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ 364 (390)
|.+.+..++..+ ..+|++++++|+|||++++.. .+. ...........-....+.....+.+++.+
T Consensus 105 --d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~------~e~~~~~~~~~G~~~d~~~~~~~~~~l~~ 169 (232)
T 3opn_A 105 --SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQ------FEAGREQVGKNGIIRDPKVHQMTIEKVLK 169 (232)
T ss_dssp --SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHH------HHSCHHHHC-CCCCCCHHHHHHHHHHHHH
T ss_pred --CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Ccc------cccCHHHhCcCCeecCcchhHHHHHHHHH
Confidence 445455454443 478999999999999999853 110 00000000000000000011236889999
Q ss_pred HHHHCCCCeeEEEecC
Q 016366 365 LAIAAGFKGINFASCV 380 (390)
Q Consensus 365 ll~~aGf~~~~~~~~~ 380 (390)
+++++||++..+...+
T Consensus 170 ~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 170 TATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHTEEEEEEEECS
T ss_pred HHHHCCCEEEEEEEcc
Confidence 9999999998886554
No 147
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.22 E-value=2.5e-11 Score=108.14 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=78.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCC-------C-Cc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-------E-GD 287 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p-------~-~D 287 (390)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++ ++++++.+|+.+.++ . .|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 34678999999999999999999998 789999998 7788877642 469999999865221 2 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
+|++.... .....+++++.+.|+|||++++.+...+
T Consensus 136 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 99876542 2345899999999999998887666543
No 148
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.21 E-value=5.5e-11 Score=106.02 Aligned_cols=129 Identities=14% Similarity=0.027 Sum_probs=101.4
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC---CcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---GDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~---~D~i~~~~v 294 (390)
+++.+|+|||||+|.++..+++..|..+++++|+ +.+++.|+++ ++|+++.+|.++.++. .|+|+..++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 3568999999999999999999998888999998 8888887752 5799999999984442 399987665
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCee
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 374 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 374 (390)
- .+-...+|....+.|+++|+|++.-.. ..+.+++||.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~l~~~~~lIlqp~~-------------------------------~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQHVKTLVLQPNN-------------------------------REDDLRKWLAANDFEIV 144 (230)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHTTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCcCCEEEEECCC-------------------------------ChHHHHHHHHHCCCEEE
Confidence 4 355678999999999999988863311 26678999999999999
Q ss_pred EEEecC---CceeEEEEe
Q 016366 375 NFASCV---CNLYIMEFF 389 (390)
Q Consensus 375 ~~~~~~---~~~~vi~~~ 389 (390)
+..-+. -++.|+.+.
T Consensus 145 ~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 145 AEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEC--CEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 876443 455566654
No 149
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.21 E-value=3.3e-11 Score=109.56 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=84.6
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhh--CCCCeEEEecc-hHHHhhCCCC---C-------C------------
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK--YPQIKAVNFDL-PHVVQDAPSY---A-------G------------ 271 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~--~p~~~~~~~Dl-~~~~~~a~~~---~-------r------------ 271 (390)
.+++.++ .....+|||+|||+|.++..+++. .+..+++++|+ +.+++.|++. . +
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 3444333 235679999999999999999998 77788999998 8888887742 2 2
Q ss_pred -------------ce-------------EEECCCCCCC------CC-C-cEEEeccccccCCh-------hHHHHHHHHH
Q 016366 272 -------------VE-------------HVGGNMFESV------PE-G-DAILMKWILHCWDD-------DHCLRILKNC 310 (390)
Q Consensus 272 -------------v~-------------~~~gd~~~~~------p~-~-D~i~~~~vlh~~~d-------~~~~~~L~~~ 310 (390)
++ ++++|++++. +. . |+|+++..++...+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 67 9999998854 33 3 99999887766543 5567899999
Q ss_pred HHhCCCCcEEEEEecc
Q 016366 311 YKAVPGNGKVIVMNSI 326 (390)
Q Consensus 311 ~~~L~pgG~lli~e~~ 326 (390)
+++|+|||+++++...
T Consensus 201 ~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 201 ASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHSCTTCEEEEEESS
T ss_pred HHhcCCCcEEEEeCcc
Confidence 9999999999985543
No 150
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.20 E-value=2.9e-11 Score=109.01 Aligned_cols=100 Identities=13% Similarity=0.275 Sum_probs=74.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCC------------CCCCceEEECCCCC--C--CCCC--
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------------SYAGVEHVGGNMFE--S--VPEG-- 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~------------~~~rv~~~~gd~~~--~--~p~~-- 286 (390)
....+|||||||+|.++..+++.+|+..++++|+ +.+++.|+ ...+|+++.+|+.+ + ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567899999999999999999999999999998 77776543 23689999999986 2 4444
Q ss_pred cEEEeccccccCCh--hH----HHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 DAILMKWILHCWDD--DH----CLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 D~i~~~~vlh~~~d--~~----~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|.|++...-.+... .. ...+|++++++|+|||.|++...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 88876543222110 00 13699999999999999988643
No 151
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.20 E-value=7.2e-11 Score=115.07 Aligned_cols=112 Identities=13% Similarity=0.191 Sum_probs=85.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhC-------CC--------CCCceEEECC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-------PS--------YAGVEHVGGN 278 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a-------~~--------~~rv~~~~gd 278 (390)
+..+++.+. ..+..+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ .++|+++.+|
T Consensus 231 v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 231 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 345566665 67788999999999999999999888778999998 6666655 42 2589999986
Q ss_pred CCC-C--C---CC-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCC
Q 016366 279 MFE-S--V---PE-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 330 (390)
Q Consensus 279 ~~~-~--~---p~-~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 330 (390)
.+. + + .. .|+|+++++++. ++...+|+++.+.|+|||++++.+.+.+..
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred ccccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 543 2 2 12 399999877732 345578999999999999999998776654
No 152
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.20 E-value=1.1e-11 Score=112.88 Aligned_cols=121 Identities=14% Similarity=0.058 Sum_probs=93.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCC----CC-cEEEec
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP----EG-DAILMK 292 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p----~~-D~i~~~ 292 (390)
....+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .+|+++++|+++ +.. .. |+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4568999999999999999999999999999998 7788877652 569999999977 432 23 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCC
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 372 (390)
.+ .+ ...+++.+.+.|+|||++++....... . ...++.+.+++.||+
T Consensus 159 a~----~~--~~~ll~~~~~~LkpgG~l~~~~g~~~~-------~--------------------e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AV----AP--LCVLSELLLPFLEVGGAAVAMKGPRVE-------E--------------------ELAPLPPALERLGGR 205 (249)
T ss_dssp SS----CC--HHHHHHHHGGGEEEEEEEEEEECSCCH-------H--------------------HHTTHHHHHHHHTEE
T ss_pred Cc----CC--HHHHHHHHHHHcCCCeEEEEEeCCCcH-------H--------------------HHHHHHHHHHHcCCe
Confidence 54 22 248899999999999999875532100 0 123456777888999
Q ss_pred eeEEEec
Q 016366 373 GINFASC 379 (390)
Q Consensus 373 ~~~~~~~ 379 (390)
+.++.++
T Consensus 206 ~~~~~~~ 212 (249)
T 3g89_A 206 LGEVLAL 212 (249)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9888755
No 153
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.19 E-value=2.3e-11 Score=116.16 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=85.0
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCCC-c
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-D 287 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D 287 (390)
.+++.+. ..+..+|||||||+|.++..++++ +..+++++|...+++.+++. ++|+++.+|+.+ +.+.. |
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 4555555 456789999999999999998886 55689999985576666542 679999999988 66655 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
+|++..+++++..+.....+.++++.|+|||++++.
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999999998887776778899999999999998853
No 154
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.19 E-value=5.8e-11 Score=109.81 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=92.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCC-C-cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~-~-D~i~~~~vl 295 (390)
.++.+|||+|||+|.++..+++..+. +++++|+ +.+++.++++ ++++++++|+++..+. . |+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 45789999999999999999999876 8999998 8888877752 4599999999984333 3 999885432
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
. ...+++++.+.|+|||++++.+...... ......+++.+.++++||++..
T Consensus 203 ----~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ----R--THEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ----S--GGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred ----h--HHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence 1 2478999999999999999887753210 0012467788999999998766
No 155
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.18 E-value=9.2e-11 Score=101.80 Aligned_cols=100 Identities=11% Similarity=-0.028 Sum_probs=80.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C--CC-CC-cEEEecc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VP-EG-DAILMKW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~--~p-~~-D~i~~~~ 293 (390)
.+..+|||+|||+|.++..++++ +..+++++|+ +.+++.++++ ++++++++|+.+ . ++ .. |+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35679999999999999988774 4567899998 8888887753 589999999976 2 32 23 9999998
Q ss_pred ccccCChhHHHHHHHHHHH--hCCCCcEEEEEeccc
Q 016366 294 ILHCWDDDHCLRILKNCYK--AVPGNGKVIVMNSIV 327 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~--~L~pgG~lli~e~~~ 327 (390)
.+|+. .+...++++.+.+ .|+|||++++.....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 87653 3456789999999 999999999876553
No 156
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.17 E-value=4.9e-11 Score=105.18 Aligned_cols=100 Identities=14% Similarity=0.174 Sum_probs=80.6
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCCCCC-C-C
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFESVP-E-G 286 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~~~p-~-~ 286 (390)
..+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+..+ . .
T Consensus 67 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 67 ARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 34455555 667889999999999999999998 567888888 888887765 2579999999987433 2 3
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+|++..++|++++ .+++.|+|||++++....
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred ccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999999886 467899999999986654
No 157
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.16 E-value=3.4e-11 Score=105.94 Aligned_cols=91 Identities=19% Similarity=0.221 Sum_probs=75.1
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-C-cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~-~-D~i~~~~vlh~ 297 (390)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+..+. . |+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~--- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF--- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc---
Confidence 367999999999999999999999999999998 7788777642 4599999999884343 3 99997543
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.+ ...+++++++.|+|||++++.
T Consensus 142 -~~--~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 142 -AS--LNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp -SS--HHHHHHHHTTSEEEEEEEEEE
T ss_pred -CC--HHHHHHHHHHhcCCCcEEEEE
Confidence 22 348999999999999999986
No 158
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.16 E-value=3.2e-11 Score=119.82 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=86.6
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~ 286 (390)
...+++.+. ..+..+|||||||+|.++..+++ .+..+++++|+..+++.|++. ++|+++.+|+++ +++..
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 345566555 45668999999999999998887 577899999995577766642 689999999998 66655
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
|+|++..++|++.++.....+.++++.|+|||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999998888888777777889999999999999885
No 159
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.16 E-value=6.1e-11 Score=105.00 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=82.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC-C-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E- 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p-~- 285 (390)
..+++.+. ..+..+|||||||+|.++..+++.. |+.+++++|. +.+++.+++. ++++++.+|+..+++ .
T Consensus 67 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 67 GMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 34555555 5677899999999999999999987 6688999998 7888877752 579999999866554 2
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 286 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
. |+|++..++|++++ ++.+.|+|||++++...
T Consensus 146 ~fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred CeeEEEECCchHHHHH--------HHHHHcCCCcEEEEEEC
Confidence 3 99999999998873 67889999999998754
No 160
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.16 E-value=1.1e-10 Score=110.96 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=78.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCC-C-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~-~- 286 (390)
.+.+.+. ..+..+|||||||+|.++..++++ +..+++++|+..+++.+++. ++++++.+|+.+ +++. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3444444 556789999999999999999887 45689999985587777652 689999999998 6774 3
Q ss_pred cEEEeccccccC-ChhHHHHHHHHHHHhCCCCcEEE
Q 016366 287 DAILMKWILHCW-DDDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 287 D~i~~~~vlh~~-~d~~~~~~L~~~~~~L~pgG~ll 321 (390)
|+|++..+.+.+ .......+|+++++.|+|||+++
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 999987732222 22345589999999999999987
No 161
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.15 E-value=2.5e-11 Score=108.21 Aligned_cols=100 Identities=12% Similarity=0.212 Sum_probs=79.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC---CCC-----CC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVP-----EG- 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~---~~p-----~~- 286 (390)
..++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.++++ ++|+++.+|+.+ .++ ..
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34568999999999999999999864 789999998 8888887762 479999999744 222 23
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|++....+++.+. .+++..+ +.|+|||++++.+...
T Consensus 136 D~V~~d~~~~~~~~~--~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 136 DMVFLDHWKDRYLPD--TLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp SEEEECSCGGGHHHH--HHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEEEcCCcccchHH--HHHHHhc-cccCCCeEEEEeCCCC
Confidence 999999888776543 3678888 9999999988765553
No 162
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.15 E-value=1.5e-10 Score=104.11 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=99.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCC-C--CcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-E--GDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p-~--~D~i~~~~v 294 (390)
+++.+|||||||+|.++..+++..|..+++++|+ +.+++.|+++ ++|+++.+|.++.++ . .|+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 3568999999999999999999998888999998 8888887753 579999999998444 2 499887654
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCee
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 374 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 374 (390)
- .+-...+|....+.|+++++|++.-.. ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLAGVTKLILQPNI-------------------------------AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHHTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------ChHHHHHHHHHCCCEEE
Confidence 3 355778999999999999998874311 25667999999999997
Q ss_pred EEEec---CCceeEEEEe
Q 016366 375 NFASC---VCNLYIMEFF 389 (390)
Q Consensus 375 ~~~~~---~~~~~vi~~~ 389 (390)
+..-+ .-++.++.+.
T Consensus 145 ~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 145 SEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 65433 3455566553
No 163
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.14 E-value=4.7e-11 Score=107.38 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=79.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCC----CC-cEEEe
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP----EG-DAILM 291 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p----~~-D~i~~ 291 (390)
..+..+|||||||+|..+..+++..|+.+++++|+ +.+++.+++. ++|+++.+|+.+.++ .. |+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34678999999999999999999889999999998 8888877752 489999999987433 23 99986
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 292 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.... .....+++++.+.|+|||++++.+...
T Consensus 149 ~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 149 DAAK-----AQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp ETTS-----SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred cCcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 6432 224579999999999999988755554
No 164
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=1.1e-10 Score=105.94 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=78.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC---CCCC--C-cEE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVPE--G-DAI 289 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~---~~p~--~-D~i 289 (390)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++ ++|+++.+|+.+ ..+. . |+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 44678999999999999999999998 789999998 8888877752 489999999865 2222 3 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 290 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 290 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
++... ......+|+++.+.|+|||+|++.+...
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 88653 3334579999999999999988766654
No 165
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.13 E-value=7e-11 Score=112.25 Aligned_cols=104 Identities=15% Similarity=0.214 Sum_probs=79.6
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCCC-----------------CCceEE
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-----------------AGVEHV 275 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~~-----------------~rv~~~ 275 (390)
...++..+. ..+..+|||+|||+|.++..+++. .|+.+++++|+ +.+++.++++ ++++++
T Consensus 94 ~~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 94 INMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 344556565 667789999999999999999998 57789999998 7777776641 579999
Q ss_pred ECCCCCC---CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 276 GGNMFES---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 276 ~gd~~~~---~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.+|+.+. ++.+ |+|++.. +++. .+++++++.|+|||++++....
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~-----~~~~--~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDM-----LNPH--VTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ESCTTCCC-------EEEEEECS-----SSTT--TTHHHHGGGEEEEEEEEEEESS
T ss_pred ECChHHcccccCCCCeeEEEECC-----CCHH--HHHHHHHHhcCCCcEEEEEeCC
Confidence 9999873 3443 9998743 2222 4799999999999999987654
No 166
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.12 E-value=1.9e-10 Score=103.68 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=76.6
Q ss_pred CcceEEEEcCCccHHHHHHHhh----CCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCCC--CC---C--CcEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFES--VP---E--GDAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~~--~p---~--~D~i~~~~ 293 (390)
++.+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. .++|+++++|+.+. ++ . .|+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999997 78899999998 888888765 36899999999873 22 2 29998765
Q ss_pred ccccCChhHHHHHHHHHHH-hCCCCcEEEEEec
Q 016366 294 ILHCWDDDHCLRILKNCYK-AVPGNGKVIVMNS 325 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~-~L~pgG~lli~e~ 325 (390)
. |. +...+|+++.+ .|+|||++++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 4 42 24578999997 9999999998665
No 167
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.12 E-value=5.5e-11 Score=107.67 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=78.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---C-----CCC-c
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V-----PEG-D 287 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~-----p~~-D 287 (390)
.++.+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ ++|+++.+|+.+. + +.. |
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 4568999999999999999999886 789999998 7777777652 5899999998762 2 233 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
+|++... ......+|+++.+.|+|||++++.+...+.
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 9987654 233457899999999999999987766543
No 168
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.11 E-value=1.1e-10 Score=104.46 Aligned_cols=101 Identities=13% Similarity=0.196 Sum_probs=80.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCCCCC--CC-
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFESVP--EG- 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~~~p--~~- 286 (390)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .+++++.+|+.+..+ ..
T Consensus 59 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 59 GIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 345555555 5677899999999999999999986 67888887 7888877653 379999999987443 23
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+|++..++|++++ ++.+.|+|||++++....
T Consensus 136 D~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 136 DRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 99999999999874 477899999999987653
No 169
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.11 E-value=8.1e-11 Score=112.43 Aligned_cols=96 Identities=19% Similarity=0.284 Sum_probs=76.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCCC--cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~--D~i~~~~vl 295 (390)
.+..+|||||||+|.++..++++ +..+++++|+..+++.|++. ++|+++.+|+.+ ++|.. |+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 45689999999999999999988 56689999986677777642 459999999998 77743 999997764
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCcEEEE
Q 016366 296 HCW-DDDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 296 h~~-~d~~~~~~L~~~~~~L~pgG~lli 322 (390)
+.+ .......+++.+.++|+|||+++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 443 223345899999999999999873
No 170
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.11 E-value=5.2e-11 Score=113.80 Aligned_cols=96 Identities=11% Similarity=0.173 Sum_probs=75.9
Q ss_pred CCcceEEEEcCC------ccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCC-------CC-cE
Q 016366 226 QNVERLVDVGGG------FGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVP-------EG-DA 288 (390)
Q Consensus 226 ~~~~~iLDiG~G------~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p-------~~-D~ 288 (390)
.+..+||||||| +|..+..++++ +|+.+++++|+ +.+. ...++|+++++|+.+ +++ .. |+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 356899999999 67777777765 59999999998 5553 235789999999988 554 33 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|++.. .|++++ ..+.|++++++|||||++++.|...
T Consensus 292 Visdg-sH~~~d--~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 292 VIDDG-SHINAH--VRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp EEECS-CCCHHH--HHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred EEECC-cccchh--HHHHHHHHHHhcCCCeEEEEEeccc
Confidence 99864 566544 4589999999999999999988763
No 171
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.11 E-value=5.9e-11 Score=107.66 Aligned_cols=94 Identities=16% Similarity=0.356 Sum_probs=72.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC--------------CCCceEEECCCCCC----CCCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--------------YAGVEHVGGNMFES----VPEG 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--------------~~rv~~~~gd~~~~----~p~~ 286 (390)
....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+. ++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4667999999999999999999999999999998 777765532 35799999999863 3333
Q ss_pred --cEEEeccccccCChhHH-----------HHHHHHHHHhCCCCcEEEEEe
Q 016366 287 --DAILMKWILHCWDDDHC-----------LRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 287 --D~i~~~~vlh~~~d~~~-----------~~~L~~~~~~L~pgG~lli~e 324 (390)
|.|++. ++++.. ..+++++.++|+|||+|++..
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 666532 343321 379999999999999999853
No 172
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.10 E-value=3.4e-10 Score=104.40 Aligned_cols=104 Identities=13% Similarity=0.230 Sum_probs=82.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh-CCCCeEEEecc-hHHHhhCCC---------CCCceEEECCCCC-C
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFE-S 282 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~---------~~rv~~~~gd~~~-~ 282 (390)
...++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+ +
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 345666666 677789999999999999999996 57889999998 778777654 2479999999987 5
Q ss_pred CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 283 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 283 ~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
++.. |+|++ +.++.. .+|+++.++|+|||++++..+.
T Consensus 167 ~~~~~~D~v~~-----~~~~~~--~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 167 LPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCceeEEEE-----CCcCHH--HHHHHHHHhCCCCCEEEEEeCC
Confidence 5543 99987 234444 7899999999999999997754
No 173
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.10 E-value=7.1e-11 Score=106.05 Aligned_cols=98 Identities=13% Similarity=0.205 Sum_probs=80.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCC-----CCC-cEEE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV-----PEG-DAIL 290 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~-----p~~-D~i~ 290 (390)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+.. +.. |+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34567999999999999999999999999999998 7888877653 47999999997632 233 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
+....+ ....+|+++.+.|+|||++++.+...
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred ECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 877654 24588999999999999998876543
No 174
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.10 E-value=1.2e-10 Score=104.71 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=82.6
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE- 285 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~- 285 (390)
....+++.+. ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. ++++++.+|+..+++.
T Consensus 79 ~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 79 MVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence 3445666665 66778999999999999999999987 78899997 7788877652 4699999998555553
Q ss_pred --CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 286 --GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 286 --~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.|+|++..+++++++ ++.+.|+|||++++....
T Consensus 157 ~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred CCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEec
Confidence 299999999998874 567899999999986653
No 175
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.10 E-value=1.3e-10 Score=108.11 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=74.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----------CCCceEEECCCCCCCC--C-C-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESVP--E-G-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~gd~~~~~p--~-~-D~i 289 (390)
.++.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+.++ . . |+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4578999999999999999999877888999998 888887764 2589999999987432 2 3 999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 016366 290 LMKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 290 ~~~~vlh~~~d~~~--~~~L~~~~~~L~pgG~lli~e 324 (390)
++...-+..+.... ..+++.++++|+|||++++..
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEec
Confidence 99655443333222 579999999999999998854
No 176
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.10 E-value=2.1e-10 Score=105.23 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=78.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCC-CCCCC--cEEEeccccccCCh
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDD 300 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d 300 (390)
.+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++. +++.++.+|+.+ +++.+ |+|++.++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4567999999999999999999988889999998 8888887763 679999999987 66553 999986653
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 301 DHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 301 ~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
..+++++++|+|||++++.++..
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 34899999999999999987654
No 177
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.09 E-value=1.4e-10 Score=109.25 Aligned_cols=102 Identities=19% Similarity=0.279 Sum_probs=81.9
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC-C-
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E- 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p-~- 285 (390)
..+++.+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++. ++++++.+|+.+..+ .
T Consensus 65 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 34555555 66778999999999999999999887 478899998 7888877652 569999999987333 2
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 286 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
. |+|++..++|+++ +++.+.|+|||++++....
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 3 9999999999887 4567899999999987543
No 178
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.09 E-value=1.5e-10 Score=105.99 Aligned_cols=100 Identities=11% Similarity=0.192 Sum_probs=77.0
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------CCceEEECCCCCC--------CCC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFES--------VPE 285 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------~rv~~~~gd~~~~--------~p~ 285 (390)
..+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.++++ ++++++++|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45677999999999999999999999999999998 7777766542 2589999999874 333
Q ss_pred -C-cEEEeccccccC----------------ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 286 -G-DAILMKWILHCW----------------DDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 286 -~-D~i~~~~vlh~~----------------~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
. |+|+++-.++.. .......+++.+.+.|+|||+++++.
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 999997433321 12225689999999999999998853
No 179
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.08 E-value=1.7e-10 Score=103.57 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=99.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCC-CCCC-cEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES-VPEG-DAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~-~p~~-D~i~~~~vlh~ 297 (390)
..+.+|||||||+|-++..++...|+.+++++|+ +.+++.++++ .+.++...|.... .+.. |++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999998 8888887763 4578899999884 4443 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEE
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 376 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 376 (390)
+.++.....+ ++.++|+|+|.++-.+.-.=..+. .. |... -...|++.+.+.|+.+.++
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs--------~g----m~~~-------Y~~~~e~~~~~~g~~~~~~ 269 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS--------KG----MFQN-------YSQSFESQARERSCRIQRL 269 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC---------------C----HHHH-------HHHHHHHHHHHHTCCEEEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC--------cc----hhhH-------HHHHHHHHHHhcCCceeee
Confidence 9888766667 999999999987765552111110 01 1111 2677899999999855443
No 180
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.08 E-value=3.1e-10 Score=105.19 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=78.7
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCC-CC-
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-EG- 286 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p-~~- 286 (390)
.+++.++ .....+|||+|||+|.++..+++. |+.+++++|+ +.+++.++++ ++++++++|++++++ ..
T Consensus 114 ~~l~~~~-~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~ 191 (284)
T 1nv8_A 114 LALELIR-KYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFA 191 (284)
T ss_dssp HHHHHHH-HHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTT
T ss_pred HHHHHhc-ccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccC
Confidence 3444433 234579999999999999999999 9999999998 8888887752 369999999988543 45
Q ss_pred --cEEEec------------cccccCChh------HHHHHHHHHH-HhCCCCcEEEE
Q 016366 287 --DAILMK------------WILHCWDDD------HCLRILKNCY-KAVPGNGKVIV 322 (390)
Q Consensus 287 --D~i~~~------------~vlh~~~d~------~~~~~L~~~~-~~L~pgG~lli 322 (390)
|+|+++ .+. +-|.. +...+++++. +.|+|||++++
T Consensus 192 ~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 192 SIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp TCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 999996 333 22321 1227899999 99999999886
No 181
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.07 E-value=5.5e-11 Score=106.05 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=78.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---CC-----CC-c
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-----EG-D 287 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~p-----~~-D 287 (390)
.++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|+.+. .+ .. |
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 4567999999999999999999987 789999998 7788877652 5699999998652 11 33 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
+|++... ......+++++++.|+|||++++.+...+
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 9986543 23345899999999999999998776643
No 182
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.07 E-value=4.2e-10 Score=108.53 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=80.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCC-CC-cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVP-EG-DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p-~~-D~i~~~~vlh~ 297 (390)
+..+|||+|||+|.++..++++ +.+++++|+ +.+++.++++ .+++++.+|+.+ ..+ .. |+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999998 458888887 7888887753 258999999998 444 23 99999999987
Q ss_pred ---CChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 298 ---WDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 298 ---~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
...+...++++++++.|+|||+++++...
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 33456679999999999999999987543
No 183
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.07 E-value=1.1e-10 Score=108.95 Aligned_cols=98 Identities=14% Similarity=0.246 Sum_probs=78.0
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC---CCCC-C-cEEEecccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE---SVPE-G-DAILMKWIL 295 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~---~~p~-~-D~i~~~~vl 295 (390)
..+|||||||+|.++..+++.+|+++++++|+ +.+++.++++ +|++++.+|..+ ..+. . |+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 34999999999999999999999999999998 8899888752 689999999875 2333 3 999986544
Q ss_pred ccCChhH--HHHHHHHHHHhCCCCcEEEEEec
Q 016366 296 HCWDDDH--CLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 296 h~~~d~~--~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+...... ...+++.++++|+|||++++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 4322221 14899999999999999887654
No 184
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.07 E-value=1.6e-10 Score=111.44 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=79.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCCC-cEEEecccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWIL 295 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~vl 295 (390)
..+..+|||||||+|.++..++++. ..+++++|+..+++.+++. ++|+++.+|+.+ +++.. |+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4567899999999999999999874 3488999987777776642 569999999988 66644 999997766
Q ss_pred ccCCh-hHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 296 HCWDD-DHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 296 h~~~d-~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|.... .....+++.+++.|+|||++++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 65532 33557999999999999999875543
No 185
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.07 E-value=8.4e-10 Score=102.13 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=72.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc--hHHHhhCCCC----------------CCceEEECCCCCC---C
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPSY----------------AGVEHVGGNMFES---V 283 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~~~----------------~rv~~~~gd~~~~---~ 283 (390)
.....+|||||||+|.++..+++.. ..+++++|+ +.+++.++++ ++++++..|..+. +
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3456799999999999999888764 347888887 5777665432 2688886665432 2
Q ss_pred ----C-CC-cEEEeccccccCChhHHHHHHHHHHHhCC---C--CcEEEEE
Q 016366 284 ----P-EG-DAILMKWILHCWDDDHCLRILKNCYKAVP---G--NGKVIVM 323 (390)
Q Consensus 284 ----p-~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~---p--gG~lli~ 323 (390)
+ .. |+|++.+++|+.++. ..+++.++++|+ | ||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~~--~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQAH--DALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGGH--HHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChHHH--HHHHHHHHHHhcccCCCCCCEEEEE
Confidence 2 23 999999999986654 489999999999 9 9987764
No 186
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.06 E-value=4.5e-10 Score=97.69 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=77.4
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC---------CeEEEecchHHHhhCCCCCCceEE-ECCCCC-C---
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ---------IKAVNFDLPHVVQDAPSYAGVEHV-GGNMFE-S--- 282 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~---------~~~~~~Dl~~~~~~a~~~~rv~~~-~gd~~~-~--- 282 (390)
++.+.+..+.+..+|||||||+|.++..++++++. .+++++|+..+ ...++++++ .+|+.+ +
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence 44555553466789999999999999999999765 78999998542 123679999 999876 3
Q ss_pred -----CCC-C-cEEEecccccc----CChhH-----HHHHHHHHHHhCCCCcEEEEEec
Q 016366 283 -----VPE-G-DAILMKWILHC----WDDDH-----CLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 283 -----~p~-~-D~i~~~~vlh~----~~d~~-----~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
++. . |+|++...+|. ..+.. ...++++++++|+|||++++...
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 232 3 99998655443 12221 14789999999999999998765
No 187
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.05 E-value=6.8e-10 Score=100.08 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=77.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---C---------
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V--------- 283 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~--------- 283 (390)
..+..+|||||||+|..+..+++..| ..+++++|+ +.+++.+++. ++++++.+|+.+. +
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 44678999999999999999999987 689999998 7788777653 3599999998652 1
Q ss_pred ------C-CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 284 ------P-EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 284 ------p-~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
+ .. |+|++.... +....+|+++.+.|+|||++++.+...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred cccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 1 33 999887543 334588999999999999999876543
No 188
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.04 E-value=1.4e-10 Score=99.96 Aligned_cols=107 Identities=9% Similarity=-0.019 Sum_probs=78.9
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCC-----
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV----- 283 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~----- 283 (390)
.+.+.+....+..+|||+|||+|.++..+++ .+..+++++|+ +.+++.++++ ++++++.+|+.+..
T Consensus 34 ~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (187)
T 2fhp_A 34 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE 112 (187)
T ss_dssp HHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence 3444443234667999999999999999887 45678999998 8888887752 47999999997622
Q ss_pred -CCC-cEEEeccccccCChhHHHHHHHHH--HHhCCCCcEEEEEeccc
Q 016366 284 -PEG-DAILMKWILHCWDDDHCLRILKNC--YKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 284 -p~~-D~i~~~~vlh~~~d~~~~~~L~~~--~~~L~pgG~lli~e~~~ 327 (390)
+.. |+|++...++....+ .+++.+ .+.|+|||++++.....
T Consensus 113 ~~~~fD~i~~~~~~~~~~~~---~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 113 EKLQFDLVLLDPPYAKQEIV---SQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp TTCCEEEEEECCCGGGCCHH---HHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred cCCCCCEEEECCCCCchhHH---HHHHHHHHhcccCCCCEEEEEeCCc
Confidence 233 999998886633322 556666 88899999998876553
No 189
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.04 E-value=7.1e-11 Score=101.22 Aligned_cols=108 Identities=10% Similarity=0.013 Sum_probs=80.1
Q ss_pred HHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---CCC
Q 016366 217 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VPE 285 (390)
Q Consensus 217 ~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~p~ 285 (390)
.+.+.+.......+|||+|||+|.++..++++ +..+++++|+ +.+++.++++ ++++++.+|+.+. .+.
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 33444432345679999999999999999987 6678999998 8888877652 4699999998762 223
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHH--HhCCCCcEEEEEecccC
Q 016366 286 G-DAILMKWILHCWDDDHCLRILKNCY--KAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~~~~~L~~~~--~~L~pgG~lli~e~~~~ 328 (390)
. |+|++...++. ....++++.+. +.|+|||++++......
T Consensus 100 ~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 100 RFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 3 99999877643 23346677776 99999999998766543
No 190
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.04 E-value=3.4e-10 Score=107.15 Aligned_cols=96 Identities=15% Similarity=0.234 Sum_probs=74.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC-------CCceEEECCCCC-CCCC-C-cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G-DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~-------~rv~~~~gd~~~-~~p~-~-D~i~~~~vl 295 (390)
.+..+|||||||+|.++..++++ +..+++++|...+++.+++. ++|+++.+|+.+ ++|. . |+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 35679999999999999998886 45689999986677766642 579999999988 6763 3 999988654
Q ss_pred ccCC-hhHHHHHHHHHHHhCCCCcEEEE
Q 016366 296 HCWD-DDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 296 h~~~-d~~~~~~L~~~~~~L~pgG~lli 322 (390)
+.+. ......+|..+++.|+|||+++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 4432 23345889999999999999873
No 191
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.03 E-value=4.8e-10 Score=97.66 Aligned_cols=106 Identities=17% Similarity=0.316 Sum_probs=77.4
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCCCC----------
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV---------- 283 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~---------- 283 (390)
...++.+.+..+.+..+|||+|||+|.++..++++ ..+++++|+..+ ...++++++++|+.+..
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhh
Confidence 34566777764567789999999999999999988 678999998432 23468999999998731
Q ss_pred ----CCCcEEEeccccccC----Ch-----hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 284 ----PEGDAILMKWILHCW----DD-----DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 284 ----p~~D~i~~~~vlh~~----~d-----~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
...|+|++....... .+ +.+..+|+.+.+.|+|||++++..+
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 223999986422111 11 2245789999999999999987554
No 192
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.02 E-value=1.9e-10 Score=101.60 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=77.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC--CCCC-CcEEEecc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--SVPE-GDAILMKW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~--~~p~-~D~i~~~~ 293 (390)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ ++++++.+|+.+ +... .|+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 3567999999999999999999987 789999998 8888877752 479999999865 2223 48888763
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
. . .....+++++++.|+|||++++.+....
T Consensus 135 ~---~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 135 D---V--FNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp T---T--SCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred C---h--hhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 2 2 2245899999999999999887665543
No 193
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.01 E-value=1.9e-09 Score=97.26 Aligned_cols=102 Identities=15% Similarity=0.190 Sum_probs=80.9
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCC-CC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV-PE 285 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~-p~ 285 (390)
...++..++ ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+.. +.
T Consensus 80 ~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 156 (248)
T 2yvl_A 80 SFYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE 156 (248)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC
Confidence 345555555 667789999999999999999998 678999998 7787777652 57999999998854 43
Q ss_pred -C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 286 -G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 286 -~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
. |+|++. .++.. .+++++.+.|+|||++++..+.
T Consensus 157 ~~~D~v~~~-----~~~~~--~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 157 GIFHAAFVD-----VREPW--HYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp TCBSEEEEC-----SSCGG--GGHHHHHHHBCTTCEEEEEESS
T ss_pred CcccEEEEC-----CcCHH--HHHHHHHHHcCCCCEEEEEeCC
Confidence 3 999873 34433 7899999999999999997764
No 194
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.01 E-value=1.8e-10 Score=97.73 Aligned_cols=96 Identities=17% Similarity=0.055 Sum_probs=73.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----C-CceEEECCCCCCCC-------CCcEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFESVP-------EGDAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~-rv~~~~gd~~~~~p-------~~D~i~~~~ 293 (390)
...+|||+|||+|.++..++++.++ ++++|+ +.+++.++++ . +++++++|+.+..+ ..|+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999999998776 888888 8888887753 2 79999999876221 239999998
Q ss_pred ccccCChhHHHHHHHHHH--HhCCCCcEEEEEecccC
Q 016366 294 ILHCWDDDHCLRILKNCY--KAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~--~~L~pgG~lli~e~~~~ 328 (390)
.+| ...+ ++++.+. +.|+|||++++......
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCc-hhHH---HHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 876 2222 4455555 99999999988766543
No 195
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.00 E-value=8.7e-10 Score=105.45 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV 283 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~ 283 (390)
..+..++.... +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.|+++ ++++++++|+.+ +.
T Consensus 190 ~la~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~ 268 (354)
T 3tma_A 190 VLAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR 268 (354)
T ss_dssp HHHHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG
T ss_pred HHHHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc
Confidence 34445555555 7778899999999999999999987 8889999998 8888887753 379999999987 44
Q ss_pred CC-C-cEEEeccccccCCh--h----HHHHHHHHHHHhCCCCcEEEEEec
Q 016366 284 PE-G-DAILMKWILHCWDD--D----HCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 284 p~-~-D~i~~~~vlh~~~d--~----~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+. . |+|+++-.++.... . ....+++++++.|+|||++++...
T Consensus 269 ~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 269 FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 33 3 99999655543221 1 125799999999999999998643
No 196
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.00 E-value=1.7e-10 Score=101.42 Aligned_cols=97 Identities=12% Similarity=0.045 Sum_probs=75.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCC-CC----CC-CcEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE-SV----PE-GDAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~-~~----p~-~D~i~~ 291 (390)
+..+|||+|||+|.++..++.+.. .+++++|+ +.+++.++++ ++++++.+|+.+ .. .. .|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 457999999999999998777653 57899998 7888887752 589999999876 21 23 599999
Q ss_pred ccccccCChhHHHHHHHHH--HHhCCCCcEEEEEeccc
Q 016366 292 KWILHCWDDDHCLRILKNC--YKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~--~~~L~pgG~lli~e~~~ 327 (390)
...+| ..+ ..++++.+ .+.|+|||++++.....
T Consensus 132 ~~~~~-~~~--~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-FNL--AEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS-SCH--HHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC-Ccc--HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 88865 333 45788888 56799999998866543
No 197
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.00 E-value=2.3e-11 Score=109.74 Aligned_cols=137 Identities=15% Similarity=0.071 Sum_probs=96.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC-cEEEecccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWIL 295 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~vl 295 (390)
.+..+|||+|||+|.++..+++.. .+++++|+ +.+++.++++ ++++++++|+.+ +.+.. |+|++...+
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCc
Confidence 356899999999999999999875 78899998 8888887752 479999999987 42233 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeE
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 375 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 375 (390)
|+..+.. ..+.+++++|+|||.+++..... ... +.... -.+....+++.+++...|.-.+.
T Consensus 155 ~~~~~~~--~~~~~~~~~L~pgG~~i~~~~~~-~~~------------~~~~~----lp~~~~~~~~~~~l~~~g~~~i~ 215 (241)
T 3gdh_A 155 GGPDYAT--AETFDIRTMMSPDGFEIFRLSKK-ITN------------NIVYF----LPRNADIDQVASLAGPGGQVEIE 215 (241)
T ss_dssp SSGGGGG--SSSBCTTTSCSSCHHHHHHHHHH-HCS------------CEEEE----EETTBCHHHHHHTTCTTCCEEEE
T ss_pred CCcchhh--hHHHHHHhhcCCcceeHHHHHHh-hCC------------ceEEE----CCCCCCHHHHHHHhccCCCEEEE
Confidence 9877654 46888999999999855422110 000 00000 11233577788888777766555
Q ss_pred EEecCCce
Q 016366 376 FASCVCNL 383 (390)
Q Consensus 376 ~~~~~~~~ 383 (390)
.....+..
T Consensus 216 ~~~~~~~~ 223 (241)
T 3gdh_A 216 QNFLNNKL 223 (241)
T ss_dssp EEEETTEE
T ss_pred ehhhcCcc
Confidence 55554443
No 198
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.99 E-value=3.3e-10 Score=102.86 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=77.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---C------CCC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V------PEG 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~------p~~ 286 (390)
..++.+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ ++|+++.+|+.+. + +..
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34568999999999999999999987 789999998 7888877652 4799999998652 2 233
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|++.... .....+++++.+.|+|||++++.+...
T Consensus 157 fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 157 YDFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp BSEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 999886432 224588999999999999988766543
No 199
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.99 E-value=1.3e-09 Score=99.77 Aligned_cols=105 Identities=15% Similarity=0.055 Sum_probs=75.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC--C------CceEE--ECCCCC-CCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFE-SVP 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~--~------rv~~~--~gd~~~-~~p 284 (390)
..+.+. ..+.+..+|||||||+|.++..++++ .+++++|+..++..+++. . ++.++ ++|+.+ + +
T Consensus 64 ~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~ 138 (265)
T 2oxt_A 64 AWMEER-GYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-V 138 (265)
T ss_dssp HHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-C
T ss_pred HHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC-C
Confidence 344444 22556789999999999999999887 578899984464443322 2 68999 999987 4 3
Q ss_pred C-CcEEEeccccccCChh----H-HHHHHHHHHHhCCCCc--EEEEEecc
Q 016366 285 E-GDAILMKWILHCWDDD----H-CLRILKNCYKAVPGNG--KVIVMNSI 326 (390)
Q Consensus 285 ~-~D~i~~~~vlh~~~d~----~-~~~~L~~~~~~L~pgG--~lli~e~~ 326 (390)
. .|+|++... +..+.. . ...+|+.++++|+||| .+++..+.
T Consensus 139 ~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 139 ERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 3 399999876 443322 1 1248999999999999 98885554
No 200
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=98.99 E-value=3.5e-10 Score=100.94 Aligned_cols=95 Identities=6% Similarity=0.119 Sum_probs=74.8
Q ss_pred cceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCC---CC-CC-cEEEec
Q 016366 228 VERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFES---VP-EG-DAILMK 292 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~---~p-~~-D~i~~~ 292 (390)
..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ ++|+++.+|+.+. ++ .. |+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999875 789999998 7788877652 4799999998762 32 33 999886
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 293 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 293 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
...+ ....+++++.+.|+|||++++.+...
T Consensus 137 ~~~~-----~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSPM-----DLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCTT-----THHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcHH-----HHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 5332 23478999999999999988755543
No 201
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.98 E-value=5.9e-10 Score=99.64 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=78.8
Q ss_pred HHHHHhh-ccCCcceEEEEcCCccHHHHHHHhhCC------CCeEEEecc-hHHHhhCCC-----------CCCceEEEC
Q 016366 217 RILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYP------QIKAVNFDL-PHVVQDAPS-----------YAGVEHVGG 277 (390)
Q Consensus 217 ~l~~~~~-~~~~~~~iLDiG~G~G~~~~~l~~~~p------~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~g 277 (390)
.+++.+. ...+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ .++++++.+
T Consensus 73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 152 (227)
T 1r18_A 73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 152 (227)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC
Confidence 3444442 145668999999999999999998765 368899997 778877764 257999999
Q ss_pred CCCCCCCC-C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 278 NMFESVPE-G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 278 d~~~~~p~-~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|..++++. + |+|++...+++++ +++.+.|+|||++++.-.
T Consensus 153 d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 153 DGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 99876553 3 9999999998765 567889999999988654
No 202
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=98.98 E-value=9.4e-10 Score=103.49 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=77.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CC-CCC-cEEEec-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV-PEG-DAILMK- 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~-p~~-D~i~~~- 292 (390)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ ++++++++|+.+ +. +.. |+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56778999999999999999999875 478999998 7777777652 479999999987 32 333 999873
Q ss_pred -----cccccCCh-------hH-------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 293 -----WILHCWDD-------DH-------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 293 -----~vlh~~~d-------~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.+++..++ .+ ..++|+++.+.|||||++++++-..
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 33443232 11 1489999999999999999876543
No 203
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.96 E-value=7.2e-10 Score=97.37 Aligned_cols=96 Identities=11% Similarity=0.048 Sum_probs=74.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC--CCCC-C-cEEEecccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--SVPE-G-DAILMKWIL 295 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~--~~p~-~-D~i~~~~vl 295 (390)
+..+|||+|||+|.++..++++.. .+++++|+ +.+++.++++ ++++++++|+.+ +.+. . |+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 457999999999999998887753 37899998 8888887752 489999999876 3333 3 999998776
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCcEEEEEecc
Q 016366 296 HCWDDDHCLRILKNCYK--AVPGNGKVIVMNSI 326 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~--~L~pgG~lli~e~~ 326 (390)
| ..+ ...+++.+.+ .|+|||++++....
T Consensus 133 ~-~~~--~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RGL--LEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp S-TTT--HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C-CCc--HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 5 333 3467888876 49999999886654
No 204
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.96 E-value=1.7e-09 Score=101.15 Aligned_cols=96 Identities=19% Similarity=0.139 Sum_probs=68.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-----hHHHhhCC--CC--CCceEEEC-CCCC-CCCCCcEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAP--SY--AGVEHVGG-NMFE-SVPEGDAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-----~~~~~~a~--~~--~rv~~~~g-d~~~-~~p~~D~i~~~~ 293 (390)
+.+..+|||||||+|.++..++++ .+++++|+ +.+++... .. ++|+++++ |+.+ +....|+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 456789999999999999999987 36778886 44443322 12 57999999 9886 332349999976
Q ss_pred ccc---cCChhH-HHHHHHHHHHhCCCCcEEEEE
Q 016366 294 ILH---CWDDDH-CLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 294 vlh---~~~d~~-~~~~L~~~~~~L~pgG~lli~ 323 (390)
.++ +..+.. ...+|+.++++|+|||.+++.
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 653 222222 225899999999999988874
No 205
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.95 E-value=1.5e-09 Score=99.91 Aligned_cols=105 Identities=14% Similarity=0.018 Sum_probs=74.5
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCC--C------CceEE--ECCCCC-CCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFE-SVP 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~--~------rv~~~--~gd~~~-~~p 284 (390)
..+.+... +.+..+|||||||+|.++..++++ .+++++|+..++..+++. . +++++ ++|+.+ + +
T Consensus 72 ~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~ 146 (276)
T 2wa2_A 72 AWIDERGG-VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME-P 146 (276)
T ss_dssp HHHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-C
T ss_pred HHHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-C
Confidence 34444422 456789999999999999999987 478889984464444322 2 68999 999886 4 3
Q ss_pred C-CcEEEeccccccCChh----H-HHHHHHHHHHhCCCCc--EEEEEecc
Q 016366 285 E-GDAILMKWILHCWDDD----H-CLRILKNCYKAVPGNG--KVIVMNSI 326 (390)
Q Consensus 285 ~-~D~i~~~~vlh~~~d~----~-~~~~L~~~~~~L~pgG--~lli~e~~ 326 (390)
. .|+|++... +..+.. . ...+|+.++++|+||| .+++..+.
T Consensus 147 ~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 147 FQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 3 399999877 443321 1 1247999999999999 98885544
No 206
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.94 E-value=1.2e-09 Score=97.38 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=76.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-----CCCeEEEecc-hHHHhhCCC-----------CCCceEEECCCCCCC----
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESV---- 283 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-----p~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~gd~~~~~---- 283 (390)
..+..+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999986 5678999998 778777764 247999999998743
Q ss_pred C--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 284 P--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 284 p--~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+ .. |+|++...+|++ ++++.+.|+|||++++.-..
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEcc
Confidence 2 23 999999999865 46778899999999987543
No 207
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.94 E-value=5.1e-10 Score=99.96 Aligned_cols=98 Identities=11% Similarity=0.202 Sum_probs=77.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---CC-----CC-
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-----EG- 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~p-----~~- 286 (390)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++++++.+|+.+. ++ ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 44678999999999999999999887 789999998 7787777642 5899999998652 21 33
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
|+|++... ......+++++.+.|+|||.+++.+...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 99988643 2334588999999999999998876553
No 208
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.94 E-value=3.8e-10 Score=104.57 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=77.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCC---CCCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~---~p~~-D~i~ 290 (390)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+. .+.. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998878889999998 888887654 25899999998762 2333 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 016366 291 MKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 291 ~~~vlh~~~d~~~--~~~L~~~~~~L~pgG~lli~e 324 (390)
+....+..+.... ..++++++++|+|||++++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 8655443333222 589999999999999998753
No 209
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.94 E-value=5.2e-10 Score=103.20 Aligned_cols=97 Identities=20% Similarity=0.167 Sum_probs=75.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCC---CCCC-cEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~---~p~~-D~i~~ 291 (390)
++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|+.+. .+.. |+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999998877788999998 888887664 26899999998762 2233 99998
Q ss_pred ccccccCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 016366 292 KWILHCWDDDH--CLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 292 ~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~ 323 (390)
....+..+... ..+++++++++|+|||++++.
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 65544332110 147899999999999998875
No 210
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.93 E-value=5.5e-10 Score=104.50 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=74.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCC--C-CCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES--V-PEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~--~-p~~-D~i~ 290 (390)
.++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. . +.. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999998 888877664 36899999998652 2 233 9999
Q ss_pred eccccccCChh--HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 291 MKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 291 ~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+....+..+.. ...+++++++++|+|||++++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 86554432221 12478999999999999988755
No 211
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.93 E-value=6e-10 Score=105.46 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=76.3
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCC---CCCC-C-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPE-G-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~---~~p~-~-D~i 289 (390)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+ ..+. . |+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999998 888887764 2589999999865 2333 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 016366 290 LMKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 290 ~~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~ 323 (390)
++...-+..+.+. ...++++++++|+|||++++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9865422211111 358999999999999999875
No 212
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.93 E-value=2.5e-09 Score=95.27 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=75.1
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC-----------CCCceEEECCCCCCC-CC-C-cE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESV-PE-G-DA 288 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~gd~~~~~-p~-~-D~ 288 (390)
..+..+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ .++++++.+|+.... +. . |+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3567899999999999999999885 6678999998 778777664 247999999987632 22 3 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 289 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|++...++++. +++++.|+|||++++....
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 99999887654 5678999999999987543
No 213
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.92 E-value=5.8e-10 Score=104.86 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=77.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----------CCCceEEECCCCCC---CCCC-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFES---VPEG-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~gd~~~~---~p~~-D~i 289 (390)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.. |+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 3568999999999999999999878889999998 778776653 35899999998762 2233 999
Q ss_pred Eecccccc---CChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 016366 290 LMKWILHC---WDDDH--CLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 290 ~~~~vlh~---~~d~~--~~~~L~~~~~~L~pgG~lli~e 324 (390)
++....|. -+... ..+++++++++|+|||++++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99876654 21111 2588999999999999999864
No 214
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.92 E-value=7.1e-10 Score=102.62 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=74.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------------CCCceEEECCCCCCC--CCC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------------YAGVEHVGGNMFESV--PEG 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------------~~rv~~~~gd~~~~~--p~~ 286 (390)
.++.+|||||||+|.++..+++. |..+++++|+ +.+++.+++ .++++++.+|+.+.+ +..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35689999999999999999998 8889999998 778776552 357999999986521 333
Q ss_pred -cEEEeccccccCChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 016366 287 -DAILMKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~e 324 (390)
|+|++....+..+... ..++++++++.|+|||++++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999876544322222 2578999999999999988763
No 215
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.92 E-value=7.6e-10 Score=99.78 Aligned_cols=97 Identities=14% Similarity=0.183 Sum_probs=76.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---C------CCC
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V------PEG 286 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~------p~~ 286 (390)
..++.+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ ++|+++.+|+.+. + +..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 34568999999999999999999987 789999998 7788777642 4799999998752 2 233
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 287 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 287 -D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
|+|++... ......+++++.+.|+|||.+++.+..
T Consensus 148 fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~ 183 (237)
T 3c3y_A 148 YDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTL 183 (237)
T ss_dssp EEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred cCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 99987632 233568999999999999998875544
No 216
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.92 E-value=9.3e-10 Score=102.03 Aligned_cols=104 Identities=15% Similarity=0.261 Sum_probs=76.6
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP 284 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p 284 (390)
....+++.++ ..+..+|||||||+|.++..++++.. +++++|+ +.+++.+++. ++++++.+|+.+ +++
T Consensus 16 i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 16 IINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 3456666666 66778999999999999999999864 6777777 7787776642 479999999988 677
Q ss_pred CCcEEEeccccccCChhHHHHHHHH--------------H--HHhCCCCcEEE
Q 016366 285 EGDAILMKWILHCWDDDHCLRILKN--------------C--YKAVPGNGKVI 321 (390)
Q Consensus 285 ~~D~i~~~~vlh~~~d~~~~~~L~~--------------~--~~~L~pgG~ll 321 (390)
..|+|+++-.+ ++..+....+|.. + +++++|||+++
T Consensus 93 ~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 93 FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 56999885544 4555555555532 2 46999999653
No 217
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.91 E-value=2.9e-09 Score=93.01 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=67.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-CCceEEECCCCCCCCCC-cEEEeccccccCChh
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVPEG-DAILMKWILHCWDDD 301 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~rv~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~ 301 (390)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ .+++++++|+.+ ++.. |+|+++..+|++++.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCc
Confidence 345679999999999999999987 5557899998 8888888764 389999999986 3444 999999999998765
Q ss_pred HHHHHHHHHHHhC
Q 016366 302 HCLRILKNCYKAV 314 (390)
Q Consensus 302 ~~~~~L~~~~~~L 314 (390)
...++++++.+.+
T Consensus 127 ~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 127 SDRAFIDKAFETS 139 (200)
T ss_dssp -CHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc
Confidence 5568899999998
No 218
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.90 E-value=6.2e-10 Score=99.99 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=77.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCC---CC-----CC-c
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-----EG-D 287 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~---~p-----~~-D 287 (390)
.++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++|+++.+|+.+. ++ .. |
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 3567999999999999999999987 689999998 7788877652 4799999997541 21 33 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 288 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 288 ~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
+|++... ......+++++.+.|+|||++++.+...+
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 9987654 23345899999999999999988766543
No 219
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.90 E-value=6.3e-10 Score=104.48 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=73.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCCC---CCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFESV---PEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~~---p~~-D~i~ 290 (390)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+.+ +.. |+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999999888889999998 888877653 257999999987622 233 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 016366 291 MKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 291 ~~~vlh~~~d~~~--~~~L~~~~~~L~pgG~lli~e 324 (390)
+...-+..++... ..++++++++|+|||++++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8654332222211 589999999999999988754
No 220
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.90 E-value=7.4e-10 Score=104.42 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=75.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCC---CCCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~---~p~~-D~i~ 290 (390)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.. |+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998878889999998 888877653 25799999998762 2333 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 016366 291 MKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 291 ~~~vlh~~~d~~~--~~~L~~~~~~L~pgG~lli~e 324 (390)
+...-+..+.... .++++++++.|+|||++++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8653222122211 589999999999999988753
No 221
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.88 E-value=2.7e-09 Score=94.90 Aligned_cols=95 Identities=8% Similarity=0.080 Sum_probs=78.8
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-CCCCC-cEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~ 297 (390)
..+.+|||||||+|-++..+. |..+++++|+ +.+++.+++. .+.++...|... +.|.. |++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 467899999999999999888 8899999998 8888887763 567889999988 55554 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+.+++....+ ++.+.|++++.++-..
T Consensus 181 LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 9877665555 8999999988766544
No 222
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.87 E-value=1.1e-09 Score=100.76 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=79.7
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC-CCCC-cEEEecccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES-VPEG-DAILMKWIL 295 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~-~p~~-D~i~~~~vl 295 (390)
+.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.++++ ++++++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999998 8888887752 5789999999874 3223 999887654
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 296 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
...+++.++.+.|+|||++++.+...
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 23478999999999999999888764
No 223
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.87 E-value=3.3e-09 Score=97.02 Aligned_cols=89 Identities=10% Similarity=0.052 Sum_probs=73.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----------CCceEEECCCCCCCCCCcEEEeccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFESVPEGDAILMKWI 294 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----------~rv~~~~gd~~~~~p~~D~i~~~~v 294 (390)
.++.+|||||||+|..+..+++. + .+++.+|+ +.+++.++++ +|++++.+|..+.....|+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 35689999999999999999988 7 89999998 8899988763 47999999998733223999986
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.+++. .+++.+++.|+|||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEEEEEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcCCCcEEEEE
Confidence 24444 4899999999999999885
No 224
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.86 E-value=1.5e-09 Score=101.20 Aligned_cols=97 Identities=23% Similarity=0.245 Sum_probs=72.4
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----------CCCceEEECCCCCCC---CCC-cEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFESV---PEG-DAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~rv~~~~gd~~~~~---p~~-D~i~~ 291 (390)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+.+ +.. |+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 458999999999999999999878889999998 778776654 268999999986522 233 99997
Q ss_pred ccccccCChh---HHHHHHHHHHHhCCCCcEEEEE
Q 016366 292 KWILHCWDDD---HCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 292 ~~vlh~~~d~---~~~~~L~~~~~~L~pgG~lli~ 323 (390)
...-+..... ...++++++++.|+|||++++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 5332211110 1258899999999999998875
No 225
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.85 E-value=1e-08 Score=98.64 Aligned_cols=122 Identities=13% Similarity=0.098 Sum_probs=90.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCC-C-cEEEecc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G-DAILMKW 293 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~-~-D~i~~~~ 293 (390)
+.+..+|||+|||+|.++..++...+..+++++|+ +.+++.|+++ ++++++++|+.+ +.+. . |+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 46778999999999999999999988667888888 8888888753 479999999988 6553 3 9999975
Q ss_pred ccccCC------hhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHH
Q 016366 294 ILHCWD------DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 367 (390)
Q Consensus 294 vlh~~~------d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~ 367 (390)
.++... ..-..++++.+++.| ||.++++.. +.+.+.+.++
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------------~~~~~~~~~~ 340 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------------EKKAIEEAIA 340 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------------------------CHHHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------------------------CHHHHHHHHH
Confidence 544321 111257889999988 555554322 2445567888
Q ss_pred HCCCCeeEEEecC
Q 016366 368 AAGFKGINFASCV 380 (390)
Q Consensus 368 ~aGf~~~~~~~~~ 380 (390)
+.||+..+...+.
T Consensus 341 ~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 341 ENGFEIIHHRVIG 353 (373)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HcCCEEEEEEEEE
Confidence 9999998877765
No 226
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.82 E-value=4.2e-09 Score=100.92 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=71.4
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC-------CCCceEEECCCCC-CCCCC-cEEEecccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPEG-DAILMKWILHC 297 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-------~~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~ 297 (390)
++.+|||||||+|.++...+++. ..+++++|...+++.|++ .++|+++.+|+++ ++|+. |+|++...-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 45789999999999988777654 357889997556666654 2679999999998 78865 99987443333
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEE
Q 016366 298 WD-DDHCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 298 ~~-d~~~~~~L~~~~~~L~pgG~lli 322 (390)
+. +.....++....+.|+|||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 22 22355788888999999998763
No 227
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.80 E-value=2.9e-08 Score=87.04 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=70.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----C-CceEEECCCCCCCCC-CcEEEeccccccC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFESVPE-GDAILMKWILHCW 298 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~-rv~~~~gd~~~~~p~-~D~i~~~~vlh~~ 298 (390)
....+|||+|||+|.++..+++..+ .+++++|+ +.+++.++++ . +++++++|+.+ ++. .|+|+++-.+|..
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCccc
Confidence 4567999999999999999998743 37888998 7888877653 2 79999999986 333 4999999999887
Q ss_pred ChhHHHHHHHHHHHhC
Q 016366 299 DDDHCLRILKNCYKAV 314 (390)
Q Consensus 299 ~d~~~~~~L~~~~~~L 314 (390)
......++|+++.+.+
T Consensus 126 ~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 126 RKHADRPFLLKAFEIS 141 (207)
T ss_dssp STTTTHHHHHHHHHHC
T ss_pred cCCchHHHHHHHHHhc
Confidence 6555568899999998
No 228
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.79 E-value=4.9e-09 Score=96.59 Aligned_cols=104 Identities=10% Similarity=0.054 Sum_probs=76.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CC-----CCC-cEE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV-----PEG-DAI 289 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~-----p~~-D~i 289 (390)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ ++++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999998876 78999998 7777766542 479999999876 32 333 999
Q ss_pred Eec------ccccc---CCh-------hHHHHHHHHHHHhCCCCcEEEEEecccC
Q 016366 290 LMK------WILHC---WDD-------DHCLRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 290 ~~~------~vlh~---~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
++. .+++. |.. ....++|+++.+.|+|||++++.+-...
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~ 215 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME 215 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 886 22221 111 1125899999999999999998775543
No 229
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.78 E-value=1.3e-09 Score=110.76 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=81.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----C--CCceEEECCCCC---CCCC-C-cEEEecc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----Y--AGVEHVGGNMFE---SVPE-G-DAILMKW 293 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~--~rv~~~~gd~~~---~~p~-~-D~i~~~~ 293 (390)
.++.+|||||||.|.++..+++. +.+++++|+ +.+++.|+. . .+|++.++++++ ..+. . |+|+|..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 46789999999999999999997 468999998 778887764 2 358999999876 2333 3 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
+|||.+++....-+.++.+.|+++|+.++...+..+
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 999999887555666778888888877777665544
No 230
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.78 E-value=1.4e-08 Score=100.19 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=82.5
Q ss_pred HHhhccCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C--CC-CC-
Q 016366 220 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VP-EG- 286 (390)
Q Consensus 220 ~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~--~p-~~- 286 (390)
..++ ..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ ++++++++|+.+ + ++ ..
T Consensus 253 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~f 331 (450)
T 2yxl_A 253 IVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVA 331 (450)
T ss_dssp HHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCE
T ss_pred HhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCC
Confidence 3344 566789999999999999999999877 78999998 6677666542 579999999987 3 44 33
Q ss_pred cEEEe------ccccccCChhH-------H-------HHHHHHHHHhCCCCcEEEEEecccC
Q 016366 287 DAILM------KWILHCWDDDH-------C-------LRILKNCYKAVPGNGKVIVMNSIVP 328 (390)
Q Consensus 287 D~i~~------~~vlh~~~d~~-------~-------~~~L~~~~~~L~pgG~lli~e~~~~ 328 (390)
|+|++ ..+++..++.. . .++|+++.+.|+|||++++++....
T Consensus 332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99986 34555544421 1 5789999999999999998876543
No 231
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.76 E-value=1.4e-08 Score=93.88 Aligned_cols=116 Identities=11% Similarity=0.059 Sum_probs=80.7
Q ss_pred cCCcceEEEEcC------CccHHHHHHHhhCC-CCeEEEecchHHHhhCCCCCCceE-EECCCCC-CCCCC-cEEEeccc
Q 016366 225 FQNVERLVDVGG------GFGVTLSMITSKYP-QIKAVNFDLPHVVQDAPSYAGVEH-VGGNMFE-SVPEG-DAILMKWI 294 (390)
Q Consensus 225 ~~~~~~iLDiG~------G~G~~~~~l~~~~p-~~~~~~~Dl~~~~~~a~~~~rv~~-~~gd~~~-~~p~~-D~i~~~~v 294 (390)
+.+..+|||+|| |+|. ..+++..| +.+++++|+.+. .+++++ +++|+.+ +++.. |+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------CCCCEEEEECccccCCccCcccEEEEcCC
Confidence 566789999999 4477 44566666 689999998433 247999 9999987 55444 99998633
Q ss_pred ccc--------C-ChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 295 LHC--------W-DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 295 lh~--------~-~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
.+. . .......+|+.+++.|+|||++++...... ...++.++
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~~ 183 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYKL 183 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHHH
Confidence 211 0 022345899999999999999998543211 12356677
Q ss_pred HHHCCCCeeEEE
Q 016366 366 AIAAGFKGINFA 377 (390)
Q Consensus 366 l~~aGf~~~~~~ 377 (390)
+++.||..+++.
T Consensus 184 l~~~GF~~v~~~ 195 (290)
T 2xyq_A 184 MGHFSWWTAFVT 195 (290)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHcCCcEEEEE
Confidence 778888776665
No 232
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.76 E-value=1.1e-08 Score=97.39 Aligned_cols=100 Identities=10% Similarity=0.158 Sum_probs=79.9
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCC-----CeEEEecc-hHHHhhCCCC-----CCceEEECCCCCCCC-CC-cEEEec
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQ-----IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVP-EG-DAILMK 292 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~-----~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~~p-~~-D~i~~~ 292 (390)
....+|||+|||+|.++..+++..+. .+++++|+ +.+++.|+.. .+++++++|.+++.+ .. |+|+++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 45679999999999999999988764 67899998 7787777642 368999999988544 33 999999
Q ss_pred cccccCChhHH----------------HHHHHHHHHhCCCCcEEEEEec
Q 016366 293 WILHCWDDDHC----------------LRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 293 ~vlh~~~d~~~----------------~~~L~~~~~~L~pgG~lli~e~ 325 (390)
-.+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 88777654432 2589999999999999888664
No 233
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.76 E-value=2.2e-08 Score=97.82 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=78.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCC-CC-cEEEe
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP-EG-DAILM 291 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p-~~-D~i~~ 291 (390)
..+++.+. .....+|||+|||+|.++..+++++ +..+++++|+ +.+++.| .+++++++|+++..+ .. |+|++
T Consensus 29 ~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 29 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 34444444 3345699999999999999999987 6788999998 7777776 679999999987433 33 99999
Q ss_pred cccccc----------CChhHH-----------------HHHHHHHHHhCCCCcEEEEEec
Q 016366 292 KWILHC----------WDDDHC-----------------LRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 292 ~~vlh~----------~~d~~~-----------------~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+=.+.. ++++.. ..+++++.+.|+|||+++++.+
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 522211 222221 2679999999999999988665
No 234
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.75 E-value=1.2e-08 Score=92.28 Aligned_cols=104 Identities=8% Similarity=0.186 Sum_probs=72.4
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCCC-C
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPE-G 286 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p~-~ 286 (390)
....+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .
T Consensus 18 ~~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 94 (244)
T 1qam_A 18 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 94 (244)
T ss_dssp HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence 3455666655 5677899999999999999999986 57888887 778777664 3689999999988 6764 3
Q ss_pred cEEEeccccccCChhHHHHHH--------------HHHHHhCCCCcEE
Q 016366 287 DAILMKWILHCWDDDHCLRIL--------------KNCYKAVPGNGKV 320 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L--------------~~~~~~L~pgG~l 320 (390)
+.++.++.-++++.+....++ ..+.+.++|+|++
T Consensus 95 ~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l 142 (244)
T 1qam_A 95 SYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL 142 (244)
T ss_dssp CCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred CeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence 444445544444444333443 3366677776644
No 235
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.74 E-value=1.9e-07 Score=89.20 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=96.7
Q ss_pred cceEEEEcCCccHHHHHH--------HhhC-------CCCeEEEecchHH--------HhhCCCC-----------CC--
Q 016366 228 VERLVDVGGGFGVTLSMI--------TSKY-------PQIKAVNFDLPHV--------VQDAPSY-----------AG-- 271 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l--------~~~~-------p~~~~~~~Dl~~~--------~~~a~~~-----------~r-- 271 (390)
..+|+|+|||+|..+..+ .+++ |.+++...|+|.- ++..++. .+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 578999999999888776 3333 7888999898531 2222110 01
Q ss_pred -ceEEECCCCC-CCCCC--cEEEeccccccCChh------------------------------------HHHHHHHHHH
Q 016366 272 -VEHVGGNMFE-SVPEG--DAILMKWILHCWDDD------------------------------------HCLRILKNCY 311 (390)
Q Consensus 272 -v~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~------------------------------------~~~~~L~~~~ 311 (390)
+.-+.+.|.. .+|.. |+|+++.+||++++. +-..+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788887 77875 999999999998721 3345799999
Q ss_pred HhCCCCcEEEEEecccCCCC-CcchH-Hh-----h-hhhhhhhhh-----hhcC--C--CcccCHHHHHHHHH-HCCCCe
Q 016366 312 KAVPGNGKVIVMNSIVPEIP-EVSSA-AR-----E-TSLLDVLLM-----TRDG--G--GRERTKKEYTELAI-AAGFKG 373 (390)
Q Consensus 312 ~~L~pgG~lli~e~~~~~~~-~~~~~-~~-----~-~~~~d~~~~-----~~~~--~--g~~~t~~e~~~ll~-~aGf~~ 373 (390)
+.|+|||++++.-...++.. ..... .. . ..+.++..- .... + -..++.+|++++++ +.||++
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I 292 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI 292 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence 99999999998777654421 11000 00 0 001111000 0000 1 12479999999998 589999
Q ss_pred eEEEec
Q 016366 374 INFASC 379 (390)
Q Consensus 374 ~~~~~~ 379 (390)
.++...
T Consensus 293 ~~le~~ 298 (374)
T 3b5i_A 293 DKLVVY 298 (374)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 876543
No 236
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.74 E-value=1.9e-08 Score=93.80 Aligned_cols=101 Identities=12% Similarity=0.258 Sum_probs=72.5
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------CCCceEEECCCCC-CCCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPE 285 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~~p~ 285 (390)
....+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 30 i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~~--~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~ 106 (299)
T 2h1r_A 30 ILDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPLA--KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK 106 (299)
T ss_dssp HHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTTS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCC
T ss_pred HHHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCccc
Confidence 3455666665 5677899999999999999999873 57888888 778877664 2689999999987 6655
Q ss_pred CcEEEeccccccCChhHHHHHH---------------HHHHHhCCCCc
Q 016366 286 GDAILMKWILHCWDDDHCLRIL---------------KNCYKAVPGNG 318 (390)
Q Consensus 286 ~D~i~~~~vlh~~~d~~~~~~L---------------~~~~~~L~pgG 318 (390)
.|+|+++-.. +++.+...++| ..+.+.++|+|
T Consensus 107 ~D~Vv~n~py-~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 107 FDVCTANIPY-KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp CSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred CCEEEEcCCc-ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 5999986554 46666666666 34678888876
No 237
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.72 E-value=1.8e-08 Score=92.55 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=88.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCC--cEEEeccc
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG--DAILMKWI 294 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~--D~i~~~~v 294 (390)
..++.+|||+|||+|.++..++++. ..+++++|+ |.+++.++++ ++|+++.+|..+-.+.. |.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 3567899999999999999999874 568999998 8887777652 67999999998743333 98887643
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCee
Q 016366 295 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 374 (390)
Q Consensus 295 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 374 (390)
. . ...+|..+.+.|+|||+|.+.+....+.. .....+.++++.++.|+++.
T Consensus 202 ~----~--~~~~l~~a~~~lk~gG~ih~~~~~~e~~~-----------------------~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 V----R--THEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------PREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp S----S--GGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------TTTTHHHHHHHHHHTTCEEE
T ss_pred C----c--HHHHHHHHHHHcCCCCEEEEEeeeccccc-----------------------chhHHHHHHHHHHHcCCcEE
Confidence 1 1 23678889999999999988777643210 01235667888889998764
No 238
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.72 E-value=3.5e-09 Score=95.85 Aligned_cols=106 Identities=8% Similarity=0.176 Sum_probs=77.0
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCC-CcE
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPE-GDA 288 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~-~D~ 288 (390)
..+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.++++ ++++++.+|+.+ +++. ...
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 45566665 5677899999999999999999986 68899998 7888888764 579999999988 6664 333
Q ss_pred EEeccccccCChhHHHHHH--------------HHHHHhCCCCcEEEEEe
Q 016366 289 ILMKWILHCWDDDHCLRIL--------------KNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 289 i~~~~vlh~~~d~~~~~~L--------------~~~~~~L~pgG~lli~e 324 (390)
++.++.-++.+++....++ +.+.+.|+|||++.+..
T Consensus 96 ~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 96 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 4444433333333333333 66899999999877643
No 239
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.66 E-value=2.5e-07 Score=88.50 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=94.6
Q ss_pred cceEEEEcCCccHHHHHHHhh-----------------CCCCeEEEecch-----------H-HHhhCCC----CCC---
Q 016366 228 VERLVDVGGGFGVTLSMITSK-----------------YPQIKAVNFDLP-----------H-VVQDAPS----YAG--- 271 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~-----------------~p~~~~~~~Dl~-----------~-~~~~a~~----~~r--- 271 (390)
..+|+|+||++|..+..+... .|.+.++..|+| . ..+..++ ..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 679999999999988877765 477888888987 1 1111111 112
Q ss_pred ceEEECCCCC-CCCCC--cEEEeccccccCChhH-------------------------H------------HHHHHHHH
Q 016366 272 VEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH-------------------------C------------LRILKNCY 311 (390)
Q Consensus 272 v~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~-------------------------~------------~~~L~~~~ 311 (390)
+.-+.|.|.. .+|.. |+|+++.+||++++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677877 68876 9999999999976321 1 12388889
Q ss_pred HhCCCCcEEEEEecccCCCC-CcchH-Hhhhhhhhhhhhhh--------c-CCCcccCHHHHHHHHHHCC-CCeeEEEe
Q 016366 312 KAVPGNGKVIVMNSIVPEIP-EVSSA-ARETSLLDVLLMTR--------D-GGGRERTKKEYTELAIAAG-FKGINFAS 378 (390)
Q Consensus 312 ~~L~pgG~lli~e~~~~~~~-~~~~~-~~~~~~~d~~~~~~--------~-~~g~~~t~~e~~~ll~~aG-f~~~~~~~ 378 (390)
+.|+|||++++.-...++.. .+... .-...+.++..... + .--..++.+|++++++++| |++.++..
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~ 291 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLET 291 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEE
Confidence 99999999998777654420 11100 11112222111100 1 0123478999999999985 88877643
No 240
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.65 E-value=5.1e-08 Score=92.20 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=73.4
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C--CceEEECCCCCCC------CC-CcEEE
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFESV------PE-GDAIL 290 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~--rv~~~~gd~~~~~------p~-~D~i~ 290 (390)
+..+|||+|||+|.++..+++... +++++|+ +.+++.++++ + +++++++|+++.. .. .|+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 457999999999999999998654 8999998 8888887752 2 4999999997722 22 39999
Q ss_pred eccc----------cccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 291 MKWI----------LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 291 ~~~v----------lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+.-. ++. .....++++++.+.|+|||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL--FDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHH--HHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 8432 122 233568999999999999997776554
No 241
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.63 E-value=5e-08 Score=95.67 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=81.0
Q ss_pred HHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-C--CCC-C-c
Q 016366 219 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S--VPE-G-D 287 (390)
Q Consensus 219 ~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~--~p~-~-D 287 (390)
...++ ..++.+|||+|||+|..+..+++..++.+++++|+ +.+++.++++ -+++++++|+.+ + ++. . |
T Consensus 239 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD 317 (429)
T 1sqg_A 239 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD 317 (429)
T ss_dssp HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEE
T ss_pred HHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCC
Confidence 33344 56678999999999999999999998889999998 6666665542 258999999987 3 343 3 9
Q ss_pred EEEe------ccccccCChh-------HH-------HHHHHHHHHhCCCCcEEEEEeccc
Q 016366 288 AILM------KWILHCWDDD-------HC-------LRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 288 ~i~~------~~vlh~~~d~-------~~-------~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
+|++ ..+++..++. +. .++|+++.+.|+|||++++++-..
T Consensus 318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9986 2445544442 11 488999999999999999877544
No 242
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.63 E-value=5.8e-07 Score=85.27 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=95.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhh----------------CCCCeEEEecchH-----HHhhCCC---CCC---ceEEECC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSK----------------YPQIKAVNFDLPH-----VVQDAPS---YAG---VEHVGGN 278 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~----------------~p~~~~~~~Dl~~-----~~~~a~~---~~r---v~~~~gd 278 (390)
+...+|+|+||++|..+..+... .|.+.++..|+|. ....... ..+ +.-+.|.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999776654443 5678888899853 1111111 012 3446788
Q ss_pred CCC-CCCCC--cEEEeccccccCChh-------------------------------HHHHHHHHHHHhCCCCcEEEEEe
Q 016366 279 MFE-SVPEG--DAILMKWILHCWDDD-------------------------------HCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 279 ~~~-~~p~~--D~i~~~~vlh~~~d~-------------------------------~~~~~L~~~~~~L~pgG~lli~e 324 (390)
|.. .+|.. |+|+++..||++++. +-..+|+..++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 888 78876 999999999997641 22346999999999999999877
Q ss_pred cccCCCCC-cc-----hHHhhhhhhhhhhhhhc---------CCCcccCHHHHHHHHHHCC-CCeeEEE
Q 016366 325 SIVPEIPE-VS-----SAARETSLLDVLLMTRD---------GGGRERTKKEYTELAIAAG-FKGINFA 377 (390)
Q Consensus 325 ~~~~~~~~-~~-----~~~~~~~~~d~~~~~~~---------~~g~~~t~~e~~~ll~~aG-f~~~~~~ 377 (390)
...++... .. +..-...+.++...... .--..++.+|++++++++| |++.+..
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 76554311 00 10111122222111100 0113568999999999996 4776654
No 243
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.60 E-value=1.2e-07 Score=93.97 Aligned_cols=101 Identities=17% Similarity=0.270 Sum_probs=76.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCC-CCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C--CCCC-cEEEec--
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILMK-- 292 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~--~p~~-D~i~~~-- 292 (390)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+|+++.+|+.+ + .+.. |+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 478999998 7777776642 579999999987 3 3344 999872
Q ss_pred ----cccc-------cCChhH-------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 293 ----WILH-------CWDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 293 ----~vlh-------~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.+++ +|+.++ ..++|+++.+.|||||+|++++-..
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 2232 233222 2478999999999999999876544
No 244
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.59 E-value=3.7e-08 Score=96.83 Aligned_cols=102 Identities=9% Similarity=0.095 Sum_probs=76.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC------CCceEEECCCCC-C--CCCC-cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~--~p~~-D~i~~~ 292 (390)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ . |+++.+|+.+ + .+.. |+|++.
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999998765 68999998 7787777652 4 8999999876 3 2333 999851
Q ss_pred ------cccc-------cCChhHH-------HHHHHHHHHhCCCCcEEEEEeccc
Q 016366 293 ------WILH-------CWDDDHC-------LRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 293 ------~vlh-------~~~d~~~-------~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.+++ .+..+.. .++|+++.+.|+|||+|+.++-..
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 2222 2222222 679999999999999998766443
No 245
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.58 E-value=4.7e-07 Score=85.47 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=105.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC---------------------------CCCceEEECC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------------------------YAGVEHVGGN 278 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~---------------------------~~rv~~~~gd 278 (390)
.+...|+.+|||.......+...+++++++.+|.|++++.-++ .+++.++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3567999999999999999999888999999999988765432 1578999999
Q ss_pred CCC-CC---------C-CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhh
Q 016366 279 MFE-SV---------P-EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL 346 (390)
Q Consensus 279 ~~~-~~---------p-~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~ 346 (390)
+.+ ++ . .. .++++-.+|++++.+++.++|+.+.+.+ |+|.+++.|.+.+..+.......+...+.-.
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~~l~~~ 254 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSNLKES 254 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHHHhhcc
Confidence 987 32 1 22 7889999999999999999999999988 7888888998876322111111000000000
Q ss_pred hhhhcC-CCcccCHHHHHHHHHHCCCC
Q 016366 347 LMTRDG-GGRERTKKEYTELAIAAGFK 372 (390)
Q Consensus 347 ~~~~~~-~g~~~t~~e~~~ll~~aGf~ 372 (390)
...... .....+.++..+.|.++||+
T Consensus 255 rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 255 RNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred cCCcccccccCCCHHHHHHHHHHCCCC
Confidence 000001 12456899999999999997
No 246
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.50 E-value=2.2e-07 Score=89.84 Aligned_cols=112 Identities=8% Similarity=0.013 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC--------------------------------------CeE
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKA 254 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~ 254 (390)
..+..++.... +.+..+|||.+||+|.++++.+....+ .++
T Consensus 188 ~lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 188 TMAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 34445555555 777889999999999999998875443 568
Q ss_pred EEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC-cEEEeccccccC--ChhHHHHHHHHHHHhCCC--CcEE
Q 016366 255 VNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHCW--DDDHCLRILKNCYKAVPG--NGKV 320 (390)
Q Consensus 255 ~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~--~d~~~~~~L~~~~~~L~p--gG~l 320 (390)
+++|+ +.+++.|+++ ++|+++++|+.+ +.+.. |+|+++=-++.- ..++...+.+.+.+.|++ ||.+
T Consensus 267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 346 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSV 346 (393)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEE
Confidence 89998 8888887752 469999999988 44444 999998443321 224455667767667665 8888
Q ss_pred EEEec
Q 016366 321 IVMNS 325 (390)
Q Consensus 321 li~e~ 325 (390)
+++..
T Consensus 347 ~iit~ 351 (393)
T 3k0b_A 347 YVLTS 351 (393)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88654
No 247
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.47 E-value=5.8e-07 Score=86.47 Aligned_cols=114 Identities=11% Similarity=0.005 Sum_probs=84.3
Q ss_pred cHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC--------------------------------------C
Q 016366 211 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------I 252 (390)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--------------------------------------~ 252 (390)
....+..++.... +.+...++|.+||+|.++++.+....+ .
T Consensus 179 ~e~LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 257 (384)
T 3ldg_A 179 KENMAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL 257 (384)
T ss_dssp CHHHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred cHHHHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence 3344455555555 778889999999999999998875444 5
Q ss_pred eEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC-cEEEecccccc--CChhHHHHHHHHHHHhCCC--Cc
Q 016366 253 KAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHC--WDDDHCLRILKNCYKAVPG--NG 318 (390)
Q Consensus 253 ~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~--~~d~~~~~~L~~~~~~L~p--gG 318 (390)
+++++|+ +.+++.|+++ ++++++++|+.+ +.+.. |+|+++=-++. -...+...+.+.+.+.|++ |+
T Consensus 258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~ 337 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTW 337 (384)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTS
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCc
Confidence 6888888 8888887752 469999999988 44444 99999844432 2345667788888888876 88
Q ss_pred EEEEEec
Q 016366 319 KVIVMNS 325 (390)
Q Consensus 319 ~lli~e~ 325 (390)
.+.++..
T Consensus 338 ~~~iit~ 344 (384)
T 3ldg_A 338 SQFILTN 344 (384)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 8888655
No 248
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.44 E-value=1.3e-07 Score=91.34 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=74.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCC------CCC-cEEEec
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV------PEG-DAILMK 292 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~------p~~-D~i~~~ 292 (390)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ ++++++++|+++.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 567889998 8888877752 45999999997622 223 999985
Q ss_pred cccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 293 WILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 293 ~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
-.....+. ....++++++.+.|+|||.+++....
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 33222111 33557999999999999999887653
No 249
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.44 E-value=5.7e-07 Score=81.40 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=64.4
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CCceEEECCCCC-CCCCC--c
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG--D 287 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~-~~p~~--D 287 (390)
....+++.++ .....+|||||||+|.++..++++ +..+++++|+ +.+++.+++. .+++++++|+.+ +++.. +
T Consensus 19 i~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 96 (249)
T 3ftd_A 19 VLKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKE 96 (249)
T ss_dssp HHHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSS
T ss_pred HHHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCC
Confidence 3456666666 567789999999999999999987 4567888888 8888887764 578999999998 66642 4
Q ss_pred EEEeccccccCChh
Q 016366 288 AILMKWILHCWDDD 301 (390)
Q Consensus 288 ~i~~~~vlh~~~d~ 301 (390)
.++..+.=++.+.+
T Consensus 97 ~~vv~NlPy~i~~~ 110 (249)
T 3ftd_A 97 LKVVGNLPYNVASL 110 (249)
T ss_dssp EEEEEECCTTTHHH
T ss_pred cEEEEECchhccHH
Confidence 55555555544443
No 250
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.42 E-value=5.5e-07 Score=83.41 Aligned_cols=80 Identities=11% Similarity=0.235 Sum_probs=62.7
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCCC--
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPE-- 285 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p~-- 285 (390)
++..+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++++|+.+ +++.
T Consensus 38 i~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~~--~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~ 114 (295)
T 3gru_A 38 FVNKAVESAN-LTKDDVVLEIGLGKGILTEELAKNA--KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD 114 (295)
T ss_dssp HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred HHHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence 3456666666 6677899999999999999999984 56777776 778877765 3789999999998 7775
Q ss_pred CcEEEeccccc
Q 016366 286 GDAILMKWILH 296 (390)
Q Consensus 286 ~D~i~~~~vlh 296 (390)
.|+|+++-.++
T Consensus 115 fD~Iv~NlPy~ 125 (295)
T 3gru_A 115 FNKVVANLPYQ 125 (295)
T ss_dssp CSEEEEECCGG
T ss_pred ccEEEEeCccc
Confidence 39998775544
No 251
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.42 E-value=9.5e-08 Score=92.67 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=74.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C-CceEEECCCCCCC------CCC-cEEEe
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFESV------PEG-DAILM 291 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~-rv~~~~gd~~~~~------p~~-D~i~~ 291 (390)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ + +++++++|+++.. +.. |+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5689999999999999999987 3457899998 7888877652 2 7999999987622 223 99998
Q ss_pred ccccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 292 KWILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 292 ~~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.-..+..+. .....++.++.+.|+|||.++++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 543322211 34568999999999999998877653
No 252
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.42 E-value=1.6e-07 Score=92.39 Aligned_cols=110 Identities=18% Similarity=0.109 Sum_probs=79.8
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-------------CCCeEEEecc-hHHHhhCCCC------C--Cc
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPSY------A--GV 272 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-------------p~~~~~~~Dl-~~~~~~a~~~------~--rv 272 (390)
+..+++.+. .....+|+|.|||+|.++..+++.. +..+++++|+ +.+++.|+.. . ++
T Consensus 160 ~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~ 238 (445)
T 2okc_A 160 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 238 (445)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence 344455444 4556799999999999999988753 3456888887 7777776531 2 68
Q ss_pred eEEECCCCC-CCCCC-cEEEeccccccCChh---------------HHHHHHHHHHHhCCCCcEEEEEec
Q 016366 273 EHVGGNMFE-SVPEG-DAILMKWILHCWDDD---------------HCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 273 ~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~---------------~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.++++|.+. +.... |+|+++-.++..... .-..+++++.+.|+|||+++++.+
T Consensus 239 ~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 239 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 899999988 44334 999998666543211 123789999999999999988764
No 253
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.41 E-value=2.1e-07 Score=88.10 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=73.2
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------CCceEEECCCCCCCCCCcEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGDAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~~~p~~D~i~~~~vlh~ 297 (390)
.++.+|||+|||+|.++.. ++ ...+++++|+ +.+++.++++ ++++++++|+++.....|+|++.-.-+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~~- 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKF- 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTTT-
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcHh-
Confidence 4668999999999999999 77 4678999998 8888877652 579999999987442339999853211
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
..++++.+.+.|+|||.+++.+...
T Consensus 270 -----~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 270 -----AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp -----GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred -----HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 2278999999999999999877653
No 254
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.38 E-value=1.9e-07 Score=91.62 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=75.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCC------CCCceEEECCCCC-C--CCCC-cEEEec
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-S--VPEG-DAILMK 292 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~--~p~~-D~i~~~ 292 (390)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ ..+|.++.+|..+ + .+.. |+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 566789999999999999999998654 68999998 777776664 2578999999876 2 3333 999873
Q ss_pred c------ccccCCh-------hH-------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 293 W------ILHCWDD-------DH-------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 293 ~------vlh~~~d-------~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
- ++..-++ +. ..++|+++.+.|+|||+|+.++-..
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 2 2222111 11 1378999999999999998766443
No 255
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.37 E-value=6.3e-07 Score=86.41 Aligned_cols=112 Identities=16% Similarity=0.078 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC--------------------------------------CeE
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKA 254 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~ 254 (390)
..+..++.... +.+..+|||.+||+|.++++++....+ .++
T Consensus 182 ~lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 182 TLAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 34445555544 777889999999999999998876432 568
Q ss_pred EEecc-hHHHhhCCCC-------CCceEEECCCCC-CCCCC-cEEEeccccccC--ChhHHHHHHHHHHHhCCC--CcEE
Q 016366 255 VNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHCW--DDDHCLRILKNCYKAVPG--NGKV 320 (390)
Q Consensus 255 ~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~--~d~~~~~~L~~~~~~L~p--gG~l 320 (390)
+++|+ +.+++.|+++ ++|++.++|+.+ +.+.. |+|+++=-++.- ..++...+.+.+.+.|++ |+.+
T Consensus 261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 340 (385)
T 3ldu_A 261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSY 340 (385)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEE
Confidence 89998 8899888763 369999999988 44444 999997554321 134566777777777776 8888
Q ss_pred EEEec
Q 016366 321 IVMNS 325 (390)
Q Consensus 321 li~e~ 325 (390)
.++..
T Consensus 341 ~iit~ 345 (385)
T 3ldu_A 341 YLITS 345 (385)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 87654
No 256
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.36 E-value=1.9e-07 Score=90.60 Aligned_cols=99 Identities=14% Similarity=0.045 Sum_probs=73.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-------C-CceEEECCCCCCC------CCC-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------A-GVEHVGGNMFESV------PEG-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-------~-rv~~~~gd~~~~~------p~~-D~i 289 (390)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ + +++++++|+++.. +.. |+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 356799999999999999999874 457889998 7788777642 2 7899999987632 223 999
Q ss_pred EeccccccCC-------hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 290 LMKWILHCWD-------DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 290 ~~~~vlh~~~-------d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
++.-.....+ .....+++.++.+.|+|||.+++...
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9863221110 13355899999999999999888654
No 257
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.35 E-value=1.1e-07 Score=91.92 Aligned_cols=99 Identities=9% Similarity=0.025 Sum_probs=72.7
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------C--CceEEECCCCCCCC------CC-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFESVP------EG-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~--rv~~~~gd~~~~~p------~~-D~i 289 (390)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|+++ + +++++++|+++.++ .. |+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 356799999999999999999863 237889998 8888877752 2 89999999876221 23 999
Q ss_pred Eecccc-----ccCC--hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 290 LMKWIL-----HCWD--DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 290 ~~~~vl-----h~~~--d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
++.-.. +... -....++++.+.+.|+|||.+++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 985333 1222 12345688999999999999887654
No 258
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.34 E-value=5.2e-07 Score=87.16 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=71.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCCC---CCCC-cEEEeccccc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES---VPEG-DAILMKWILH 296 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~~---~p~~-D~i~~~~vlh 296 (390)
++.+|||+|||+|.++..+++... +++++|+ +.+++.++++ -..++.++|+++. .+.. |+|++.-...
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 478999999999999999998754 4889998 8888887753 1245778998762 2333 9998864331
Q ss_pred cCCh-------hHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 297 CWDD-------DHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 297 ~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
..+. ....++++.+.+.|+|||+|+++...
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1111 22357899999999999999876554
No 259
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.32 E-value=1e-06 Score=80.60 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=64.3
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---CCceEEECCCCC-CCCC--C-
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPE--G- 286 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~-~~p~--~- 286 (390)
+..+++.+. ..+. +|||||||+|.++..++++.. +++++|+ +.+++.+++. ++++++++|+.+ +++. .
T Consensus 36 ~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 36 LRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 345666666 5666 999999999999999999864 5666666 7787776642 689999999988 6653 2
Q ss_pred cEEEeccccccCChhHHHHHHHH
Q 016366 287 DAILMKWILHCWDDDHCLRILKN 309 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~ 309 (390)
|.|+.+ .=++.+.+-..++|..
T Consensus 112 ~~iv~N-lPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLVAN-LPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEEEE-ECSSCCHHHHHHHHHH
T ss_pred cEEEec-CcccccHHHHHHHhcC
Confidence 665544 4445666555555544
No 260
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.32 E-value=1.5e-06 Score=85.21 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=70.4
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCC----
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---- 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p---- 284 (390)
..+++.++ ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|+++ ++++|+.+|+++.++
T Consensus 276 ~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 276 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 34445554 556689999999999999999987 567899998 8888887752 579999999987432
Q ss_pred -C-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 285 -E-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 285 -~-~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
. . |+|++.--... +..+++.+.+ ++|++.+++.
T Consensus 353 ~~~~fD~Vv~dPPr~g-----~~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 353 AKNGFDKVLLDPARAG-----AAGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp GTTCCSEEEECCCTTC-----CHHHHHHHHH-HCCSEEEEEE
T ss_pred hcCCCCEEEECCCCcc-----HHHHHHHHHh-cCCCeEEEEE
Confidence 2 2 99987533222 1245555543 6888877763
No 261
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.32 E-value=2.8e-06 Score=82.90 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=67.5
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCCCCC-CcEEEecccccc
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-GDAILMKWILHC 297 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~~p~-~D~i~~~~vlh~ 297 (390)
.+..+|||+|||+|.++..+++.. .+++++|+ +.+++.|+++ + ++++.+|+++..+. .|+|++.-....
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~--~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRG--FNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 456799999999999999999874 47888887 8888887753 3 89999999884443 499998544322
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 298 WDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 298 ~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
... .+++.+. .|+|||.+++..
T Consensus 366 ~~~----~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 LHP----RLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp SCH----HHHHHHH-HHCCSEEEEEES
T ss_pred hHH----HHHHHHH-hcCCCcEEEEEC
Confidence 221 3555554 489999988753
No 262
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.30 E-value=3e-07 Score=86.95 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=70.4
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------------CCceEEECCCCCCC------C
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFESV------P 284 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------------~rv~~~~gd~~~~~------p 284 (390)
.++.+|||||||+|.++.++++..+ .+++.+|+ +.+++.++++ +|++++.+|.++-+ .
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 3578999999999999999998765 78888888 8888877642 17999999998722 2
Q ss_pred CC-cEEEecccc-cc--CCh-hHHHHHHHHH----HHhCCCCcEEEEEe
Q 016366 285 EG-DAILMKWIL-HC--WDD-DHCLRILKNC----YKAVPGNGKVIVMN 324 (390)
Q Consensus 285 ~~-D~i~~~~vl-h~--~~d-~~~~~~L~~~----~~~L~pgG~lli~e 324 (390)
.. |+|++.-.- .. -+. .....+++.+ +++|+|||.+++..
T Consensus 266 ~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs 314 (364)
T 2qfm_A 266 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 314 (364)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEc
Confidence 23 999886432 10 010 0123556665 99999999988653
No 263
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.29 E-value=8.6e-07 Score=81.57 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=75.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-----------CCCceEEECCCCCCCCC---C-cEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESVPE---G-DAI 289 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~~rv~~~~gd~~~~~p~---~-D~i 289 (390)
+++.+||-||+|.|..++++++..+..+++.+|+ |.+++.+++ .+|++++.+|..+-+.. . |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 5678999999999999999998877778888888 888887764 37999999999884332 2 999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEec
Q 016366 290 LMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 290 ~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+....=..-+.. -...+++.|+++|+|||.++....
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 865431111110 123789999999999999887543
No 264
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.27 E-value=3.5e-06 Score=76.13 Aligned_cols=109 Identities=13% Similarity=0.052 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHh-hCCCC----CCceEEECCCCC-CCCC-
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQ-DAPSY----AGVEHVGGNMFE-SVPE- 285 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~-~a~~~----~rv~~~~gd~~~-~~p~- 285 (390)
+.+.++.+... +.+..+|||+|||+|.++..++++.+...++++|+..-+. ..... .++.....++.. .++.
T Consensus 61 ~KL~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~ 139 (277)
T 3evf_A 61 AKLRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPV 139 (277)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCC
Confidence 34456666633 6777899999999999999888776554555666521111 11111 145555665533 4443
Q ss_pred -CcEEEeccccc---cCChh-HHHHHHHHHHHhCCCC-cEEEE
Q 016366 286 -GDAILMKWILH---CWDDD-HCLRILKNCYKAVPGN-GKVIV 322 (390)
Q Consensus 286 -~D~i~~~~vlh---~~~d~-~~~~~L~~~~~~L~pg-G~lli 322 (390)
.|+|++....+ ++-|+ ....+|+.+.+.|+|| |.+++
T Consensus 140 ~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 140 KCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 39999987555 11122 2234689999999999 99887
No 265
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.26 E-value=4.4e-07 Score=83.53 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=54.3
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCC--CeEEEecc-hHHHhhCCCC--CCceEEECCCCC-CCC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVP 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~-~~p 284 (390)
..+++.+. ..+..+|||||||+|.++..++++.+. .+++++|+ +.+++.+++. ++++++++|+.+ +++
T Consensus 32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 45666665 667789999999999999999998764 44677776 8888887764 689999999987 654
No 266
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.23 E-value=6.4e-07 Score=92.88 Aligned_cols=99 Identities=11% Similarity=0.109 Sum_probs=73.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCC---CCCC-cEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFES---VPEG-DAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~---~p~~-D~i~~~~ 293 (390)
.+.+|||+|||+|.++..++.... .+++++|+ +.+++.++++ ++++++++|+++. .... |+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 567999999999999999988543 46899998 7888877752 3799999999872 2223 9999854
Q ss_pred cccc--------CC-hhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 294 ILHC--------WD-DDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 294 vlh~--------~~-d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.... +. .....++++.+.+.|+|||+|++....
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 2210 11 134568899999999999999965543
No 267
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.23 E-value=1.5e-06 Score=78.86 Aligned_cols=68 Identities=12% Similarity=0.222 Sum_probs=54.4
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC----CCCceEEECCCCC-CCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVP 284 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~rv~~~~gd~~~-~~p 284 (390)
++..+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 17 i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 17 VLQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 3455666666 6677899999999999999999986 56777777 888887765 3689999999988 654
No 268
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.23 E-value=1.1e-06 Score=79.58 Aligned_cols=91 Identities=8% Similarity=0.068 Sum_probs=61.5
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCC-CCCC--
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPE-- 285 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~-~~p~-- 285 (390)
+...+++.+. ..+..+|||||||+|.++. +. +.+..+++++|+ +.+++.++++ ++++++.+|+.+ +++.
T Consensus 9 i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence 4456666665 6677899999999999999 54 555534788887 8888887764 479999999987 5432
Q ss_pred ----CcEEEeccccccCChhHHHHHH
Q 016366 286 ----GDAILMKWILHCWDDDHCLRIL 307 (390)
Q Consensus 286 ----~D~i~~~~vlh~~~d~~~~~~L 307 (390)
.+.++.++.=++.+.+-..++|
T Consensus 86 ~~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 86 EKMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred cccCCceEEEECCCCCccHHHHHHHH
Confidence 2344444444444444333333
No 269
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.23 E-value=1.1e-06 Score=89.00 Aligned_cols=126 Identities=20% Similarity=0.230 Sum_probs=81.6
Q ss_pred hhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhc---cCCcceEEEEcCCccHHHHHHHh---h-CCCCeEEEecchH
Q 016366 189 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEG---FQNVERLVDVGGGFGVTLSMITS---K-YPQIKAVNFDLPH 261 (390)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~---~~~~~~iLDiG~G~G~~~~~l~~---~-~p~~~~~~~Dl~~ 261 (390)
.|+-+++|+.....|.+++.. .+.+..+. ..+...|||||||+|-++...++ + .-++++.+++-..
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 466677888877777776522 22222221 22446799999999987444433 3 2334678888644
Q ss_pred HHhhCCC-------CCCceEEECCCCC-CCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE
Q 016366 262 VVQDAPS-------YAGVEHVGGNMFE-SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 262 ~~~~a~~-------~~rv~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll 321 (390)
+...+++ .++|+++.+|+++ .+|+- |+|++-..=...-.+-...+|....+.|||||.++
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 5555443 2679999999999 88865 99976532111222334467888889999999764
No 270
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=98.12 E-value=8.3e-05 Score=69.83 Aligned_cols=145 Identities=12% Similarity=0.164 Sum_probs=103.1
Q ss_pred CcceEEEEcCCccHHHHHHHhh-CCCCeEEEecchHHHhhCC-----------------------------CCCCceEEE
Q 016366 227 NVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDLPHVVQDAP-----------------------------SYAGVEHVG 276 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~Dl~~~~~~a~-----------------------------~~~rv~~~~ 276 (390)
+...|+-+|||.=.....+... .++++++.+|.|++++.-+ ..++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4678999999999888888765 3688999999998876421 135788999
Q ss_pred CCCCC--C---------CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhh
Q 016366 277 GNMFE--S---------VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL 343 (390)
Q Consensus 277 gd~~~--~---------~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 343 (390)
.|+.+ . ++.. -++++-.++.+++.+++.++|+.+.+..+ +|.+++.|.+.++++. ...|
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~f-------g~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDRF-------GQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSHH-------HHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCHH-------HHHH
Confidence 99976 2 2222 68888999999999999999999999875 5667778988554311 1111
Q ss_pred hhhhhhh---cCC-CcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 344 DVLLMTR---DGG-GRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 344 d~~~~~~---~~~-g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
--++-.. ..+ ...++.++..+.|.++||+.+++..+
T Consensus 242 ~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 1111000 001 13467899999999999998776654
No 271
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.08 E-value=2.2e-06 Score=77.83 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=77.5
Q ss_pred CcceEEEEcCCccHHHHHHHhh-------CCC-----CeEEEecc-h---HHHhh-----------CC------------
Q 016366 227 NVERLVDVGGGFGVTLSMITSK-------YPQ-----IKAVNFDL-P---HVVQD-----------AP------------ 267 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~-------~p~-----~~~~~~Dl-~---~~~~~-----------a~------------ 267 (390)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.++. ++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988887664 674 57888885 3 22221 11
Q ss_pred --------CCCCceEEECCCCCC---CCC----C-cEEEecc-ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCC
Q 016366 268 --------SYAGVEHVGGNMFES---VPE----G-DAILMKW-ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 330 (390)
Q Consensus 268 --------~~~rv~~~~gd~~~~---~p~----~-D~i~~~~-vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 330 (390)
...+++++.||+.+- ++. . |+|++.- .-...|+-....+|+.+++.|+|||.|+... .
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys----a- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT----S- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC----C-
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe----C-
Confidence 113577899998652 322 3 9988752 1111122123478999999999999987411 0
Q ss_pred CCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEEecC
Q 016366 331 PEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 380 (390)
Q Consensus 331 ~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 380 (390)
...+++.|.++||++.++...+
T Consensus 215 ----------------------------a~~vrr~L~~aGF~v~~~~g~~ 236 (257)
T 2qy6_A 215 ----------------------------AGFVRRGLQEAGFTMQKRKGFG 236 (257)
T ss_dssp ----------------------------BHHHHHHHHHHTEEEEEECCST
T ss_pred ----------------------------CHHHHHHHHHCCCEEEeCCCCC
Confidence 0135677888999977664444
No 272
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.05 E-value=5.9e-06 Score=83.84 Aligned_cols=126 Identities=14% Similarity=0.101 Sum_probs=78.0
Q ss_pred hhhhcccCchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh----C---------CCCeEE
Q 016366 189 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK----Y---------PQIKAV 255 (390)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~----~---------p~~~~~ 255 (390)
.|+-+.+|+.+...|.+++.. .+.+..++..+...|||||||+|-++...+++ . ...+++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~-------al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVG-------ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHH-------HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHH-------HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 355566677666666666532 12222221123568999999999986543222 1 235788
Q ss_pred Eecc-hHHHhhCCC------CCCceEEECCCCC-CC------CC-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEE
Q 016366 256 NFDL-PHVVQDAPS------YAGVEHVGGNMFE-SV------PE-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKV 320 (390)
Q Consensus 256 ~~Dl-~~~~~~a~~------~~rv~~~~gd~~~-~~------p~-~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l 320 (390)
+++- +.++...+. .++|+++.+|+++ .+ |+ .|+|++-..=.....+-....|..+.+.|+|||.+
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 8886 322222111 2679999999998 56 44 49998765522223343456788888999999975
Q ss_pred E
Q 016366 321 I 321 (390)
Q Consensus 321 l 321 (390)
+
T Consensus 531 i 531 (745)
T 3ua3_A 531 I 531 (745)
T ss_dssp E
T ss_pred E
Confidence 4
No 273
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.98 E-value=5.7e-06 Score=76.85 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=60.8
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC-----CCceEEECCCCC-C--CC--
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S--VP-- 284 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~rv~~~~gd~~~-~--~p-- 284 (390)
..+++.+. ..+..+|||+|||+|.++..+++++|+.+++++|. +.+++.++++ ++++++++|+.+ + ++
T Consensus 16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~ 94 (301)
T 1m6y_A 16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 94 (301)
T ss_dssp HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence 45556665 56678999999999999999999998889999998 8888877652 589999999875 3 11
Q ss_pred ---CCcEEEecc
Q 016366 285 ---EGDAILMKW 293 (390)
Q Consensus 285 ---~~D~i~~~~ 293 (390)
..|+|++.-
T Consensus 95 g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 95 GIEKVDGILMDL 106 (301)
T ss_dssp TCSCEEEEEEEC
T ss_pred CCCCCCEEEEcC
Confidence 228887644
No 274
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.94 E-value=1.9e-05 Score=81.90 Aligned_cols=112 Identities=13% Similarity=0.013 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC------------------------------------------C
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY------------------------------------------P 250 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~------------------------------------------p 250 (390)
..+..++.... +.+..+|||.+||+|.++++.+... +
T Consensus 177 ~LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~ 255 (703)
T 3v97_A 177 TLAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY 255 (703)
T ss_dssp HHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence 34445555555 7778899999999999999877642 3
Q ss_pred CCeEEEecc-hHHHhhCCCC-------CCceEEECCCCC-CCC--C-C-cEEEecccccc--CChhHHHHHHHHHHH---
Q 016366 251 QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP--E-G-DAILMKWILHC--WDDDHCLRILKNCYK--- 312 (390)
Q Consensus 251 ~~~~~~~Dl-~~~~~~a~~~-------~rv~~~~gd~~~-~~p--~-~-D~i~~~~vlh~--~~d~~~~~~L~~~~~--- 312 (390)
+.+++++|+ +.+++.|+.+ +.|++.++|+.+ ..| . . |+|+++=-+.. -.+.+...+.+.+.+
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk 335 (703)
T 3v97_A 256 SSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK 335 (703)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHH
Confidence 367888888 8898888753 358999999976 333 2 3 99999833322 223344455554444
Q ss_pred hCCCCcEEEEEec
Q 016366 313 AVPGNGKVIVMNS 325 (390)
Q Consensus 313 ~L~pgG~lli~e~ 325 (390)
.+.|||+++|+..
T Consensus 336 ~~~~g~~~~ilt~ 348 (703)
T 3v97_A 336 NQFGGWNLSLFSA 348 (703)
T ss_dssp HHCTTCEEEEEES
T ss_pred hhCCCCeEEEEeC
Confidence 4458999888654
No 275
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.93 E-value=2.2e-05 Score=73.27 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=68.4
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCCC------CCceEEECCCCC-CCC----CC-cEEE
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP----EG-DAIL 290 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~-~~p----~~-D~i~ 290 (390)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .+|+++.+|+.+ +.. .. |.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999874 5578999998 7777766542 579999999876 221 22 9998
Q ss_pred ec------cccccCChh---------H-------HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 291 MK------WILHCWDDD---------H-------CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 291 ~~------~vlh~~~d~---------~-------~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+. .++...+|. + -.++|+++.+.++ ||+|+.++-.
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 62 222221111 1 1357888888886 8987765543
No 276
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.93 E-value=1.3e-05 Score=72.40 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecch-HHHhhCCC----CCCceEEE-C-CCCCCCCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQDAPS----YAGVEHVG-G-NMFESVPE 285 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~-~~~~~a~~----~~rv~~~~-g-d~~~~~p~ 285 (390)
+.+.++.+.+. +.+..+|||||||.|.++...+++.+-..++++|+. .+...+.. ..++.... . |+. .++.
T Consensus 77 fKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~-~l~~ 154 (282)
T 3gcz_A 77 AKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVF-NMEV 154 (282)
T ss_dssp HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGG-GSCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchh-hcCC
Confidence 44557777774 777889999999999999998887776667788872 22222221 11233333 2 333 2332
Q ss_pred --CcEEEeccccc----cCChhHHHHHHHHHHHhCCCC--cEEEEEec
Q 016366 286 --GDAILMKWILH----CWDDDHCLRILKNCYKAVPGN--GKVIVMNS 325 (390)
Q Consensus 286 --~D~i~~~~vlh----~~~d~~~~~~L~~~~~~L~pg--G~lli~e~ 325 (390)
.|+|++.-..+ .........+|.-+.+.|+|| |.+++--+
T Consensus 155 ~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 155 IPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 39999887665 111122235788889999999 99887433
No 277
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.89 E-value=1e-05 Score=77.71 Aligned_cols=92 Identities=10% Similarity=0.002 Sum_probs=69.7
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC---------------------CCceEEECCCCCC--
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------AGVEHVGGNMFES-- 282 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~---------------------~rv~~~~gd~~~~-- 282 (390)
.+.+|||+|||+|..+..++++.+..+++.+|+ +.+++.++++ .+++++++|+.+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 457999999999999999999988888999998 7777665531 2388999998652
Q ss_pred -CCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 283 -VPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 283 -~p~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.+.. |+|++. ... . ...+|..+.+.|+|||.+++..
T Consensus 127 ~~~~~fD~I~lD-P~~---~--~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLD-PFG---S--PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEEC-CSS---C--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeC-CCC---C--HHHHHHHHHHhcCCCCEEEEEe
Confidence 2333 998853 221 1 1378999999999999877754
No 278
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.88 E-value=4.3e-06 Score=80.12 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=62.2
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC------CCceEEECCCCCC---CC-------------
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VP------------- 284 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~------~rv~~~~gd~~~~---~p------------- 284 (390)
..+|||+|||+|.++..+++.. .+++++|+ +.+++.|+++ ++++++.+|+++. ++
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4689999999999999998864 47888887 8888877642 5799999998652 11
Q ss_pred --CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 285 --EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 285 --~~-D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.. |+|++.---. .+..++.+.|+|+|+++++.
T Consensus 292 ~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 292 KSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp GGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEE
T ss_pred ccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEE
Confidence 13 8887642211 23445566667888887654
No 279
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.88 E-value=2e-05 Score=71.63 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=67.5
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-h-------HHHhhCCCC-------CCceEEECCCCCC---CC--
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P-------HVVQDAPSY-------AGVEHVGGNMFES---VP-- 284 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~-------~~~~~a~~~-------~rv~~~~gd~~~~---~p-- 284 (390)
..+..+|||+|||+|..+..+++. ..+++++|+ + .+++.++++ .+|+++++|+.+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345579999999999999999986 357888888 7 777777653 4699999998762 33
Q ss_pred -C-CcEEEeccccccCC------------------hhHHHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 285 -E-GDAILMKWILHCWD------------------DDHCLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 285 -~-~D~i~~~~vlh~~~------------------d~~~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
. .|+|++.-.+++-. +.+...+++.+.+..+ .+++|..+..
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~ 219 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL 219 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence 3 39999876554421 1223456666666653 3566655543
No 280
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.72 E-value=0.00028 Score=65.64 Aligned_cols=144 Identities=10% Similarity=0.032 Sum_probs=95.0
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCC---------CCCceEEECCCCCCCC----------CC-
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESVP----------EG- 286 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~---------~~rv~~~~gd~~~~~p----------~~- 286 (390)
+...||+||||-=.....+.. .++++++.+|.|.+++..++ .++..++..|+.+.+. ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456899999998877666542 12489999999988876543 3568899999976311 11
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhh-hhh-hhh-----hcCCCcc-cC
Q 016366 287 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL-DVL-LMT-----RDGGGRE-RT 358 (390)
Q Consensus 287 D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d~~-~~~-----~~~~g~~-~t 358 (390)
-++++-.++|++++++...+|+.+.+.+.||+.++ .|.+.++.+.. ........ ... -.. ....... ++
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~-~d~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 257 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIA-VETSPLHGDEW--REQMQLRFRRVSDALGFEQAVDVQELIYHDE 257 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEE-EECCCTTCSHH--HHHHHHHHHHHHC-----------CCTTCCT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEE-EEecCCCCcch--hHHHHHHHHHHHHHcCCcCCCCccccccCCC
Confidence 57889999999999999999999999999988765 56554442100 00001011 000 000 0001122 36
Q ss_pred -HHHHHHHHHHCCCCee
Q 016366 359 -KKEYTELAIAAGFKGI 374 (390)
Q Consensus 359 -~~e~~~ll~~aGf~~~ 374 (390)
.++..++|.+.||+.+
T Consensus 258 ~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 258 NRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCCHHHHHTTTTEEEE
T ss_pred ChHHHHHHHHHCcCccc
Confidence 7899999999999987
No 281
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.69 E-value=3.8e-05 Score=77.17 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=75.2
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC------------------CCeEEEecc-hHHHhhCCC------CC
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP------------------QIKAVNFDL-PHVVQDAPS------YA 270 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p------------------~~~~~~~Dl-~~~~~~a~~------~~ 270 (390)
..+++.+. .....+|+|.+||+|.++..+.+... ..+++++|+ +.+++.|+. ..
T Consensus 159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 33444444 44567999999999999988876531 236788887 777776653 23
Q ss_pred C-----ceEEECCCCC-C-CC--CCcEEEeccccccCCh------------hHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 271 G-----VEHVGGNMFE-S-VP--EGDAILMKWILHCWDD------------DHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 271 r-----v~~~~gd~~~-~-~p--~~D~i~~~~vlh~~~d------------~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
. +.+.++|.+. + .+ ..|+|+++=.+..... ..-..++.++.+.|+|||++.++-+
T Consensus 238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 3 7899999987 3 22 2399998754443211 1123789999999999999988744
No 282
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.68 E-value=1.9e-05 Score=75.98 Aligned_cols=93 Identities=11% Similarity=0.014 Sum_probs=70.4
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCC-CeEEEecc-hHHHhhCCCC-------CC-ceEEECCCCCC----CCCC-cEEE
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFES----VPEG-DAIL 290 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~-------~r-v~~~~gd~~~~----~p~~-D~i~ 290 (390)
.++.+|||++||+|.++..++++.++ .+++.+|+ +..++.++++ ++ ++++.+|.++- .+.. |+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 34679999999999999999998655 57899998 7777777652 34 89999998652 2223 9998
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 291 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 291 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
+.= . ... ..++..+.+.|+|||.|++..
T Consensus 131 lDP-~---g~~--~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP-F---GTP--VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC-S---SCC--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC-C---cCH--HHHHHHHHHHhCCCCEEEEEe
Confidence 764 1 111 268999999999999877755
No 283
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.68 E-value=0.00018 Score=58.51 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=58.6
Q ss_pred CCcceEEEEcCCcc-HHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCC---CC-cEEEeccccccCC
Q 016366 226 QNVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP---EG-DAILMKWILHCWD 299 (390)
Q Consensus 226 ~~~~~iLDiG~G~G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p---~~-D~i~~~~vlh~~~ 299 (390)
....++||||||.| ..+..|++. .+..++++|+ |..++ +++.|++++.. .+ |+|+..+ |
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir-----P 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR-----P 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----C
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----C
Confidence 35679999999999 688888874 2567888886 54433 89999999655 24 9998766 4
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 300 DDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 300 d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
+.+....+.++.+.. |.-++|...
T Consensus 99 P~El~~~i~~lA~~v--~adliI~pL 122 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV--GARLIIKPL 122 (153)
T ss_dssp CTTTHHHHHHHHHHH--TCEEEEECB
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 455566666666665 455665443
No 284
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.61 E-value=0.00027 Score=66.82 Aligned_cols=96 Identities=9% Similarity=0.039 Sum_probs=66.6
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhhCCCCCCceEEECCCCC-CCCCC--cEEEeccccccCChh
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDD 301 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~ 301 (390)
+.++.++||+||++|.++..++++ ..+++++|...+-......++|+++.+|.++ ..+.. |+|+|..+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 457889999999999999999987 4789999975555555567899999999998 43333 9999887653 23
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEec
Q 016366 302 HCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 302 ~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
....++.+.......++.++....
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred HhHHHHHHHHhccccceEEEEEEe
Confidence 333444443333333354444433
No 285
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.57 E-value=0.00043 Score=63.03 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchH-HHhhCCC----CCC-ceEEEC-CCCCCCCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPH-VVQDAPS----YAG-VEHVGG-NMFESVPE 285 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~-~~~~a~~----~~r-v~~~~g-d~~~~~p~ 285 (390)
+.+.++.+. .-+.+..++||+||++|.++..++++.+-..++++|+.. ....... ..+ +.+..+ |+..-.+.
T Consensus 68 ~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~ 146 (300)
T 3eld_A 68 AKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTE 146 (300)
T ss_dssp HHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCC
Confidence 344556565 435677899999999999999999876655677788732 1111110 112 233333 44431222
Q ss_pred -CcEEEeccccccCC----hh-HHHHHHHHHHHhCCCC-cEEEEEe
Q 016366 286 -GDAILMKWILHCWD----DD-HCLRILKNCYKAVPGN-GKVIVMN 324 (390)
Q Consensus 286 -~D~i~~~~vlh~~~----d~-~~~~~L~~~~~~L~pg-G~lli~e 324 (390)
.|+|++.-.-+ -. |+ ....+|.-+.+.|+|| |.+++--
T Consensus 147 ~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~Kv 191 (300)
T 3eld_A 147 PSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKV 191 (300)
T ss_dssp CCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred CcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 39999875554 21 11 2245688889999999 9988753
No 286
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.52 E-value=4.3e-05 Score=72.53 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=69.8
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------------CCceEEECCCCCCC---C---C
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFESV---P---E 285 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------------~rv~~~~gd~~~~~---p---~ 285 (390)
++.+||-||+|.|..++++++. |..+++.+|+ |.+++.++++ +|++++.+|..+-+ + .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999975 4568888888 8898877651 46899999987522 1 1
Q ss_pred -CcEEEecccccc--------CChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 286 -GDAILMKWILHC--------WDDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 286 -~D~i~~~~vlh~--------~~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.|+|+..-.=.. ....-...+++.++++|+|||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 299987532111 01112357899999999999988764
No 287
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.39 E-value=0.0011 Score=60.10 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHH-Hh---hCCCC--CCceEEEC-CCCC-CCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV-VQ---DAPSY--AGVEHVGG-NMFE-SVP 284 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~-~~---~a~~~--~rv~~~~g-d~~~-~~p 284 (390)
+.+.++.+.+. +....+||||||++|.++...+....-.+++++|+... .+ ..++. .-|.++.+ |++. +..
T Consensus 81 ~KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~ 159 (321)
T 3lkz_A 81 AKLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSE 159 (321)
T ss_dssp HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCC
Confidence 44556666655 67778999999999999997777665557899997222 11 11122 33889988 8766 322
Q ss_pred CCcEEEeccccccCChhH-----HHHHHHHHHHhCCCC-cEEEE
Q 016366 285 EGDAILMKWILHCWDDDH-----CLRILKNCYKAVPGN-GKVIV 322 (390)
Q Consensus 285 ~~D~i~~~~vlh~~~d~~-----~~~~L~~~~~~L~pg-G~lli 322 (390)
..|+|+|.-. .--+.+. ..++|.-+.+.|++| |.++|
T Consensus 160 ~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 160 CCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 3499888755 3333322 234778888999998 88877
No 288
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.39 E-value=0.00093 Score=58.62 Aligned_cols=107 Identities=14% Similarity=0.153 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecchHHHhh----CCCC--CCceEEEC-CCCC-CCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD----APSY--AGVEHVGG-NMFE-SVP 284 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~~~~~~----a~~~--~rv~~~~g-d~~~-~~p 284 (390)
+...++.+.+. +....+|||+||++|.++...+....-.+++++|+...-.. .+.+ +.|+|.++ |++. +..
T Consensus 65 ~KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~ 143 (267)
T 3p8z_A 65 AKLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPE 143 (267)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCc
Confidence 44567777774 77888999999999999998877765557999998322111 1112 56999999 9765 222
Q ss_pred CCcEEEeccccccCCh----h-HHHHHHHHHHHhCCCCcEEEE
Q 016366 285 EGDAILMKWILHCWDD----D-HCLRILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 285 ~~D~i~~~~vlh~~~d----~-~~~~~L~~~~~~L~pgG~lli 322 (390)
..|.|+|.-.= --+. + ...++|.-+.++|++ |.++|
T Consensus 144 ~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 144 KCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp CCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred cccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence 35998876432 1222 1 123477888899999 77776
No 289
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.38 E-value=0.0006 Score=68.31 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=70.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhC---CCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCC-CCC---C--CcE
Q 016366 227 NVERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE-SVP---E--GDA 288 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~---p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~-~~p---~--~D~ 288 (390)
...+|+|.+||+|.++..+++.. +..+++++|+ +.+...|+.+ +++.+.++|.+. ++| . .|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 56799999999999999998874 3567888888 7777766531 357899999987 433 2 299
Q ss_pred EEeccccc-cC------------------C---hhHHHHHHHHHHHhCC-CCcEEEEEec
Q 016366 289 ILMKWILH-CW------------------D---DDHCLRILKNCYKAVP-GNGKVIVMNS 325 (390)
Q Consensus 289 i~~~~vlh-~~------------------~---d~~~~~~L~~~~~~L~-pgG~lli~e~ 325 (390)
|+++=-+. .| + ..+ ..++.++.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEec
Confidence 99762211 11 1 111 258999999999 9999887544
No 290
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.37 E-value=0.00011 Score=73.91 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=72.6
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCC---------------CCeEEEecc-hHHHhhCCCC-------C
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP---------------QIKAVNFDL-PHVVQDAPSY-------A 270 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p---------------~~~~~~~Dl-~~~~~~a~~~-------~ 270 (390)
++..+++.+. . ...+|+|.+||+|.++..+++..+ ..+++++|+ +.+++.|+.+ .
T Consensus 233 Vv~lmv~ll~-p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 310 (544)
T 3khk_A 233 IVTLIVEMLE-P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF 310 (544)
T ss_dssp HHHHHHHHHC-C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHh-c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 3444555544 2 234999999999999988765432 467899998 7777776631 2
Q ss_pred CceEEECCCCC-C-CCC-C-cEEEecccccc--CChh-------------------------HHHHHHHHHHHhCCCCcE
Q 016366 271 GVEHVGGNMFE-S-VPE-G-DAILMKWILHC--WDDD-------------------------HCLRILKNCYKAVPGNGK 319 (390)
Q Consensus 271 rv~~~~gd~~~-~-~p~-~-D~i~~~~vlh~--~~d~-------------------------~~~~~L~~~~~~L~pgG~ 319 (390)
++.+.++|.+. + .+. . |+|+++=-+.. |..+ .-..++.++.+.|+|||+
T Consensus 311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 390 (544)
T 3khk_A 311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS 390 (544)
T ss_dssp BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence 35558889876 4 232 2 99998633321 2110 012589999999999999
Q ss_pred EEEEec
Q 016366 320 VIVMNS 325 (390)
Q Consensus 320 lli~e~ 325 (390)
+.++-+
T Consensus 391 ~aiVlP 396 (544)
T 3khk_A 391 MALLLA 396 (544)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 888643
No 291
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.36 E-value=0.00085 Score=59.73 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhh--CCCCeE--EEecchHHHhhCCCCCCc---eEEEC-CCCCCCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK--YPQIKA--VNFDLPHVVQDAPSYAGV---EHVGG-NMFESVP 284 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~--~p~~~~--~~~Dl~~~~~~a~~~~rv---~~~~g-d~~~~~p 284 (390)
+.+.+|-+.. -+++..+|||+||+.|..+.-.+++ -..+.+ ++.|+ .........+++ .+.++ |+++.-+
T Consensus 60 yKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~ 137 (269)
T 2px2_A 60 AKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPS 137 (269)
T ss_dssp HHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCC
T ss_pred HHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCC
Confidence 4455677665 3788899999999999999998885 211122 33342 111111111455 45557 9987333
Q ss_pred C-CcEEEeccccccCC----hhH-HHHHHHHHHHhCCCCc-EEEEEecc
Q 016366 285 E-GDAILMKWILHCWD----DDH-CLRILKNCYKAVPGNG-KVIVMNSI 326 (390)
Q Consensus 285 ~-~D~i~~~~vlh~~~----d~~-~~~~L~~~~~~L~pgG-~lli~e~~ 326 (390)
. .|+|+|.-.=. -+ |+. ...+|.-+.+.|+||| .+++--+.
T Consensus 138 ~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 138 EISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 3 49998764321 11 222 2236777889999999 88874443
No 292
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.36 E-value=0.00043 Score=71.48 Aligned_cols=100 Identities=10% Similarity=0.040 Sum_probs=67.6
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCC---CCeEEEecc-hHHHhhC--CC----------CCCceEEECCCCCCC--C-CC
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYP---QIKAVNFDL-PHVVQDA--PS----------YAGVEHVGGNMFESV--P-EG 286 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p---~~~~~~~Dl-~~~~~~a--~~----------~~rv~~~~gd~~~~~--p-~~ 286 (390)
....+|+|.|||+|.++..++++.+ ..+++++|+ +.+++.| +. .+...+...|+.++. + ..
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3567999999999999999998876 356888888 6666665 21 122355666666521 2 23
Q ss_pred -cEEEecccccc-CC-hh-------------------------HHHHHHHHHHHhCCCCcEEEEEec
Q 016366 287 -DAILMKWILHC-WD-DD-------------------------HCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 287 -D~i~~~~vlh~-~~-d~-------------------------~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
|+|+++=-+.. .. +. -...++.++.+.|+|||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99998744411 11 11 123478899999999999988654
No 293
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.25 E-value=9.1e-05 Score=86.63 Aligned_cols=141 Identities=14% Similarity=0.141 Sum_probs=63.4
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCC-----CeEEEecc-hHHHhhCCCC---CCceEEECCCCCC---CCCC-cEEEecc
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQ-----IKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFES---VPEG-DAILMKW 293 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~-----~~~~~~Dl-~~~~~~a~~~---~rv~~~~gd~~~~---~p~~-D~i~~~~ 293 (390)
...+||+||+|+|..+..+++...+ .+++..|+ +...+.+++. -.++....|..++ .+.. |+|+..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 4569999999999877776665432 24666676 5555555543 1122222233222 2233 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCe
Q 016366 294 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 373 (390)
Q Consensus 294 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 373 (390)
+||.-++.. ..|+++++.|+|||++++.+...... ......+.+.. .. .++...+.++|.++|+++||+.
T Consensus 1320 vl~~t~~~~--~~l~~~~~lL~p~G~l~~~e~~~~~~-----~g~~~~~~~~~--~r-~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATLGDPA--VAVGNMAATLKEGGFLLLHTLLAGHP-----LGEMVGFLTSP--EQ-GGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred cccccccHH--HHHHHHHHhcCCCcEEEEEecccccc-----ccccccccccc--cc-cCCcccCHHHHHHHHHhCCCce
Confidence 999765544 78999999999999999877642110 00000000000 00 0123456788999999999988
Q ss_pred eEEE
Q 016366 374 INFA 377 (390)
Q Consensus 374 ~~~~ 377 (390)
+...
T Consensus 1390 ~~~~ 1393 (2512)
T 2vz8_A 1390 VALK 1393 (2512)
T ss_dssp EEEE
T ss_pred eeec
Confidence 7653
No 294
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.20 E-value=0.0052 Score=63.65 Aligned_cols=147 Identities=10% Similarity=0.102 Sum_probs=103.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCC--------CCeEEEecchHHHhhCCC------------------------------
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYP--------QIKAVNFDLPHVVQDAPS------------------------------ 268 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p--------~~~~~~~Dl~~~~~~a~~------------------------------ 268 (390)
+...|+-+|||.=.....+...+| +++++.+|+|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467899999999999999988755 788999999888664221
Q ss_pred CCCceEEECCCCC--CC----------CCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcc
Q 016366 269 YAGVEHVGGNMFE--SV----------PEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS 334 (390)
Q Consensus 269 ~~rv~~~~gd~~~--~~----------p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~ 334 (390)
.++..++..|+.+ .+ ... -++++--+|.+++.+++.++|+.+.+ + |+|.+++.|.+.+..+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence 0378899999987 21 222 67788899999999999999999985 4 6888898898876533221
Q ss_pred hHHhhhhhhhhhhhhh---c-CCCcccCHHHHHHHHHHCCCCeeEEEec
Q 016366 335 SAARETSLLDVLLMTR---D-GGGRERTKKEYTELAIAAGFKGINFASC 379 (390)
Q Consensus 335 ~~~~~~~~~d~~~~~~---~-~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 379 (390)
. ...+--++... . .-...++.++..+.|.+.||+.+....+
T Consensus 265 -f---~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 265 -F---SKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp -H---HHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred -H---HHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 1 11111111100 0 0113457999999999999987665543
No 295
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.18 E-value=0.00038 Score=62.97 Aligned_cols=77 Identities=9% Similarity=0.173 Sum_probs=54.3
Q ss_pred HHHHhhccCCc--ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHH-------HhhCCC-------C-CCceEEECCC
Q 016366 218 ILEHYEGFQNV--ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV-------VQDAPS-------Y-AGVEHVGGNM 279 (390)
Q Consensus 218 l~~~~~~~~~~--~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~-------~~~a~~-------~-~rv~~~~gd~ 279 (390)
+.+.+. ..++ .+|||+|||+|..+..++++. .+++++|. +.+ ++.+++ . .+++++++|.
T Consensus 78 l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~g--~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 344443 4455 799999999999999999984 46888887 533 433321 1 4699999998
Q ss_pred CC---CCCCC-cEEEecccccc
Q 016366 280 FE---SVPEG-DAILMKWILHC 297 (390)
Q Consensus 280 ~~---~~p~~-D~i~~~~vlh~ 297 (390)
.+ .++.. |+|++.-.+++
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhCcccCCEEEEcCCCCC
Confidence 75 23334 99999876654
No 296
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.10 E-value=0.0002 Score=68.99 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=50.5
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--------CCceEEECCCCCCCC-----CCcEEEec
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP-----EGDAILMK 292 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--------~rv~~~~gd~~~~~p-----~~D~i~~~ 292 (390)
.+.+|||+|||+|..+..+++.. .+++++|+ +.+++.++++ ++++++++|+.+.++ ..|+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 36899999999999999998874 57888887 7888877642 469999999987322 23999884
No 297
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.08 E-value=0.002 Score=55.87 Aligned_cols=90 Identities=9% Similarity=0.085 Sum_probs=60.0
Q ss_pred CCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC---------CCCceEEECCCCCC-------------
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFES------------- 282 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~rv~~~~gd~~~~------------- 282 (390)
.+..+||||||| ..+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+-
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 356899999985 56666666 45778888886 555555443 34799999996431
Q ss_pred -----------CC--C-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 283 -----------VP--E-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 283 -----------~p--~-~D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
.+ . .|+|+...-. ....+..+.+.|+|||.|+ .|.+
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv-~DNv 155 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLL-FDDY 155 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEE-ETTG
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEE-EeCC
Confidence 22 2 2999877631 1244666779999999874 5553
No 298
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.07 E-value=0.00038 Score=50.59 Aligned_cols=61 Identities=10% Similarity=0.104 Sum_probs=50.0
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCC-cHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM-MLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~-~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
.+-.|++.|...||.|+.+||+.+|+ ... .+++.|..|...|+|...+...+ .|++|+.+.
T Consensus 12 ~~~~IL~~Lk~~g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~~gRP-~w~LT~~g~ 73 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQGTTPP-IWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEECSSSC-EEEECHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecCCCCC-CeEeCHhHH
Confidence 45567888888899999999999999 888 99999999999999975322223 788887665
No 299
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.05 E-value=0.00028 Score=54.98 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=55.3
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHh--ccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccCC
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNK 116 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~--~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~ 116 (390)
.+..|++.|.++|+.|+.+||+.+ ++ .+..+++.|+.|...|+|... ..+.|++|+.+..+....
T Consensus 14 ~d~~IL~~L~~~g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL---ANGVYVITEEGEAYLNGE 80 (111)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC---STTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec---CCceEEECchHHHHHHHH
Confidence 356788889876899999999999 99 999999999999999999863 334899999998777543
No 300
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=97.01 E-value=0.0022 Score=58.60 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=66.1
Q ss_pred CCcceEEEEcCCccHHHHHHHhhC-----CCCeEEEecc-hH--------------------------HHhhCCC-----
Q 016366 226 QNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PH--------------------------VVQDAPS----- 268 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~~~~-----p~~~~~~~Dl-~~--------------------------~~~~a~~----- 268 (390)
..+++|||+|+..|..+..+++.. ++.+++++|. +. .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 456899999999999988887654 4778888883 11 1122222
Q ss_pred ---CCCceEEECCCCCC---CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 016366 269 ---YAGVEHVGGNMFES---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 324 (390)
Q Consensus 269 ---~~rv~~~~gd~~~~---~p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 324 (390)
.++|+++.||+.+- ++.. |+|++..-. -+.....|..++..|+|||.+++-|
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~----y~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL----YESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS----HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc----cccHHHHHHHHHhhcCCCEEEEEcC
Confidence 16899999999763 3322 888776532 1334578999999999999766533
No 301
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.99 E-value=0.00072 Score=61.40 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=52.4
Q ss_pred HHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC--CCceEEECCCCC
Q 016366 215 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE 281 (390)
Q Consensus 215 ~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~--~rv~~~~gd~~~ 281 (390)
..++++.+. ..+...+||.+||.|..+..++++ +.+++++|. |.+++.+++. +|++++++||.+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 456777776 677789999999999999999998 678999998 7777666532 589999999865
No 302
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.74 E-value=0.0018 Score=49.43 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=45.0
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
-.++.|+..|.. |+.|+.|||+.+|+ .+..+.+.|+.|...|+|..........|++++
T Consensus 23 ~~r~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (102)
T 3pqk_A 23 PVRLMLVCTLVE-GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRRNIKQIFYRLTE 81 (102)
T ss_dssp HHHHHHHHHHHT-CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEECSSSCCEEEECS
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECc
Confidence 344556666755 69999999999999 999999999999999999864222223466665
No 303
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.72 E-value=0.00071 Score=47.64 Aligned_cols=54 Identities=9% Similarity=0.269 Sum_probs=44.8
Q ss_pred HhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 46 ~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
+..|++.|..+ +++|..|||+.+|+ +...+.+.|..|...|+|.. ...+.|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~---~~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSS---PSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEE---EETTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEec---CCCceEeeC
Confidence 55688888765 38999999999999 99999999999999999875 244677754
No 304
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.72 E-value=0.0012 Score=49.95 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=50.1
Q ss_pred HHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
++..-.++.|++.| . |+.|+.|||+.+++ .+..+.+.|+.|...|+|.+. . +.|++++.+.
T Consensus 27 ~l~~~~r~~Il~~L-~-~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---~-g~y~l~~~g~ 87 (96)
T 1y0u_A 27 AVTNPVRRKILRML-D-KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---G-ERWVVTDAGK 87 (96)
T ss_dssp HHSCHHHHHHHHHH-H-TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---T-TEEEECTTTC
T ss_pred HhCCHHHHHHHHHH-c-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---C-CEEEECCCch
Confidence 34444566788888 5 69999999999999 999999999999999999873 3 5888887654
No 305
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.58 E-value=0.0013 Score=49.77 Aligned_cols=60 Identities=12% Similarity=0.157 Sum_probs=46.4
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
-.++.|+..|..+++.|..|||+.+|+ ++..+.+.|+.|...|+|..........|++++
T Consensus 24 ~~~~~il~~l~~~~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~ 83 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQRDAQRILYSIKN 83 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECC
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEECh
Confidence 445667777876569999999999999 999999999999999999864221122355554
No 306
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.57 E-value=0.0017 Score=51.52 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=48.1
Q ss_pred HHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
++..-.++.|+..|...|+.|+.+||+.+|+ .+..+.+.|+.|...|++..........|++++
T Consensus 38 al~~~~rl~IL~~L~~~~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~ 101 (122)
T 1u2w_A 38 AIADENRAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEGKLALYSLGD 101 (122)
T ss_dssp HHHSHHHHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----CCEEEESC
T ss_pred HhCCHHHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEECCEEEEEECH
Confidence 3444456778888875579999999999999 999999999999999999863211112466664
No 307
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.55 E-value=0.0013 Score=49.92 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=46.6
Q ss_pred HHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
.-.++.|+..|.+ |+.|+.|||+.+|+ .+..+.+.|+.|...|+|..........|++++
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKS 81 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECH
Confidence 3445667778877 79999999999999 999999999999999999864222223466654
No 308
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.47 E-value=0.0015 Score=47.28 Aligned_cols=58 Identities=16% Similarity=0.307 Sum_probs=47.6
Q ss_pred HHhChhHHHhhcC---CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 45 IQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 45 ~~lglfd~L~~~g---~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
.+..|++.|..++ ++|+.|||+++|+ +...+.+.|+-|...|+|...+ ..++.|..++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g-~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC-SSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCceEecC
Confidence 3566888888877 8999999999999 8999999999999999998643 2346676654
No 309
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.45 E-value=0.0059 Score=49.30 Aligned_cols=67 Identities=12% Similarity=0.180 Sum_probs=47.8
Q ss_pred HHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
...++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 36 t~~~~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 36 TPPDVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence 3566778888888789999999999999 999999999999999999874332222 266777666554
No 310
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.43 E-value=0.0027 Score=46.31 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=39.2
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..|++.|...|++|..|||+.+|+ .+..+.+.|+.|...|+|..
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 346777776679999999999999 99999999999999999984
No 311
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.42 E-value=0.0028 Score=46.30 Aligned_cols=63 Identities=14% Similarity=0.300 Sum_probs=47.6
Q ss_pred HHhChhHHHhhcC---CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccc
Q 016366 45 IQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF 112 (390)
Q Consensus 45 ~~lglfd~L~~~g---~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l 112 (390)
.+..|++.|.+++ ++|+.+||+++|+ ....+.+.|.-|...|+|...+ ...+.|...+....+
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES-SSSCEEEEC------
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCeeEEeCcHHhc
Confidence 4556788888776 7999999999999 8999999999999999998643 244678777655433
No 312
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.35 E-value=0.0014 Score=49.54 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=52.2
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccC---CCcceecCcccc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSK 110 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~---~~~~y~~t~~s~ 110 (390)
.++..-.++.|+..|..+++.|..+||+.+++ ++..+.+.|+.|...|+|...... ....|++|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 45556667888888865569999999999999 999999999999999999853211 112477776554
No 313
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.26 E-value=0.0018 Score=50.98 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=50.7
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
.+|.--.++.|+..|.. |+.|+.|||+.+|+ .+..+.+.|+.|...|+|..........|++++.
T Consensus 13 ~al~~~~R~~Il~~L~~-~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~ 77 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR-GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKE 77 (118)
T ss_dssp HHHTSHHHHHHHHHHHT-CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSH
T ss_pred HHhCCHHHHHHHHHHHh-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHH
Confidence 34555567778888875 79999999999999 9999999999999999998642222235777763
No 314
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.10 E-value=0.0054 Score=47.31 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCC---
Q 016366 25 YSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE--- 100 (390)
Q Consensus 25 ~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~--- 100 (390)
...++++..+.|...+|. .|.. |+.+..||++.+ ++ ++..+.+.|+.|...|+|.+.....+
T Consensus 4 ~~~~l~~l~~~~~~~IL~---------~L~~-~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~ 69 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILX---------HLTH-GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPK 69 (107)
T ss_dssp HHHHHHHHCSTTHHHHHH---------HHTT-CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCE
T ss_pred HHHHHHHHcCccHHHHHH---------HHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCCCCe
Confidence 345566666666655443 3443 689999999999 99 99999999999999999987533222
Q ss_pred cceecCccccccc
Q 016366 101 RLYALNPVSKYFV 113 (390)
Q Consensus 101 ~~y~~t~~s~~l~ 113 (390)
-.|++|+.+..+.
T Consensus 70 ~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 70 VEYELSEYGRSLE 82 (107)
T ss_dssp EEEEECTTGGGGH
T ss_pred EEEEECccHHHHH
Confidence 2488888766544
No 315
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.09 E-value=0.0022 Score=48.58 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=50.4
Q ss_pred HhChhHHHhhcCCCCHHHH----HHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEI----AAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eL----a~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
++.++..|..+|+.|..+| |+.+++ ++..+.++++.|+..|++.+........|.+|+.+..+.
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHH
Confidence 4456777776679999999 899999 999999999999999999874322334577787776555
No 316
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.07 E-value=0.0027 Score=49.35 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=45.7
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
.++.|+..|.. |+.|+.+||+.+|+ ++..+.+.|+.|...|+|..........|++++.+
T Consensus 22 ~r~~IL~~L~~-~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~ 81 (114)
T 2oqg_A 22 TRWEILTELGR-ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKVGREIRYRALGAE 81 (114)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHH
Confidence 45567777744 69999999999999 99999999999999999986321112237766644
No 317
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.06 E-value=0.01 Score=55.14 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=54.3
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-CCCeEEEecc-hHHHhhCCC--CCCceEEECCCCC
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS--YAGVEHVGGNMFE 281 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~--~~rv~~~~gd~~~ 281 (390)
+..++++.+. ..++..++|..||.|..+..++++. |+.+++++|. |.+++.+++ .+|++++.+++.+
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 3457777776 6778899999999999999999985 7889999998 788887753 2578888887754
No 318
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.01 E-value=0.0038 Score=48.03 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=39.5
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.++.|+..|.. |+.|+.|||+.+|+ ++..+.+.|+.|...|+|...
T Consensus 27 ~r~~IL~~L~~-~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 27 NRIRIMELLSV-SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 44556666764 68999999999999 999999999999999999864
No 319
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.01 E-value=0.0038 Score=49.17 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=47.4
Q ss_pred HHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
+|..-.++.|+..|.. |+.++.|||+.+|+ ++..+.+.|+.|...|+|........-.|++++
T Consensus 17 aL~~~~r~~IL~~L~~-~~~~~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~ 79 (118)
T 2jsc_A 17 ALADPTRCRILVALLD-GVCYPGQLAAHLGL----TRSNVSNHLSCLRGCGLVVATYEGRQVRYALAD 79 (118)
T ss_dssp HHSSHHHHHHHHHHHT-TCCSTTTHHHHHSS----CHHHHHHHHHHHTTTTSEEEEECSSSEEEEESS
T ss_pred HhCCHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEECCEEEEEECh
Confidence 3334455667777775 68999999999999 999999999999999999864221222466665
No 320
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.00 E-value=0.0064 Score=50.39 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=52.5
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 345567888887789999999999999 999999999999999999875433333 267777776555
No 321
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.97 E-value=0.01 Score=45.84 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
..+....+++....... +.|+..|.. |+.|+.|||+.+|+ ++..+.+.|+.|...|+|........
T Consensus 11 ~~~~~~~~~~al~~~~r---------~~IL~~L~~-~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~gr~ 76 (108)
T 2kko_A 11 LLDQVARVGKALANGRR---------LQILDLLAQ-GERAVEAIATATGM----NLTTASANLQALKSGGLVEARREGTR 76 (108)
T ss_dssp HHHHHHHHHHHHTTSTT---------HHHHHHHTT-CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEEETTE
T ss_pred hHHHHHHHHHHhCCHHH---------HHHHHHHHc-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCE
Confidence 33444455554444443 445556665 69999999999999 99999999999999999986421111
Q ss_pred cceecCc
Q 016366 101 RLYALNP 107 (390)
Q Consensus 101 ~~y~~t~ 107 (390)
..|++++
T Consensus 77 ~~y~l~~ 83 (108)
T 2kko_A 77 QYYRIAG 83 (108)
T ss_dssp EEEEESC
T ss_pred EEEEECh
Confidence 2355554
No 322
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=95.96 E-value=0.0071 Score=57.23 Aligned_cols=103 Identities=13% Similarity=0.058 Sum_probs=68.9
Q ss_pred cCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC------------CCCceEEECCCCC-C--CCCC-c
Q 016366 225 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------YAGVEHVGGNMFE-S--VPEG-D 287 (390)
Q Consensus 225 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------~~rv~~~~gd~~~-~--~p~~-D 287 (390)
..++.+|||+.+|.|.=+.++++..++..++..|+ +.-++..++ ..++.+...|... + .+.. |
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56778999999999999999998877667888886 333222211 1468888888765 2 2233 8
Q ss_pred EEEec----c----cc-------ccCChhH-------HHHHHHHHHHhCCCCcEEEEEeccc
Q 016366 288 AILMK----W----IL-------HCWDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 288 ~i~~~----~----vl-------h~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 327 (390)
.|++. . ++ ..+...+ -.++|.++.+.|||||+|+-++=.+
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 88752 1 11 1122222 2478999999999999987655433
No 323
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.96 E-value=0.0058 Score=49.52 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=52.1
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 346677788877679999999999999 999999999999999999874332232 367777776554
No 324
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.94 E-value=0.026 Score=45.92 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=46.2
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecc--cCCCcc---eecCccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV--SGGERL---YALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~--~~~~~~---y~~t~~s~~l~ 113 (390)
++.++..| ..+++|..+||+.+++ ++..+.+.++.|+..|+|.+.. ...+++ +.+|+.+..+.
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHH-HcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 44478888 6679999999999999 9999999999999999998621 222332 56666665544
No 325
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.94 E-value=0.0052 Score=44.48 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=39.3
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
|.+.|.++|.++++|||+.+++ .+..++|-|+.|...|++.+
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R 48 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVR 48 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 6678888889999999999999 99999999999999999986
No 326
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.80 E-value=0.0053 Score=45.36 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=39.6
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
|.+.|...|.+|+.|||+.+++ .+..++|.|+.|...|+|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 6778888889999999999999 999999999999999999863
No 327
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.80 E-value=0.0068 Score=49.23 Aligned_cols=66 Identities=12% Similarity=0.208 Sum_probs=49.9
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC---cceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~---~~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..+.+|+.+..+.
T Consensus 40 ~~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 40 MTEWRIISVLSSASDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHHSSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 456677888887789999999999999 99999999999999999986432222 2366677665544
No 328
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=95.79 E-value=0.025 Score=51.97 Aligned_cols=123 Identities=18% Similarity=0.235 Sum_probs=72.2
Q ss_pred CCcceEEEEcCCccHHHHH----HHhhCCCCe--EEEecc---------hH----HH----hhCCC--CCC--ceEEECC
Q 016366 226 QNVERLVDVGGGFGVTLSM----ITSKYPQIK--AVNFDL---------PH----VV----QDAPS--YAG--VEHVGGN 278 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~----l~~~~p~~~--~~~~Dl---------~~----~~----~~a~~--~~r--v~~~~gd 278 (390)
...-+|||+|-|+|..... +.+..|+.+ ++.++. +. .. +.... ..+ +++..||
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 3456899999999975543 234567755 455552 00 00 00000 133 3567788
Q ss_pred CCCC---CCC--CcEEEecccc-ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcC
Q 016366 279 MFES---VPE--GDAILMKWIL-HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG 352 (390)
Q Consensus 279 ~~~~---~p~--~D~i~~~~vl-h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 352 (390)
+.+. ++. .|++++...= .--|+-.-..+++++++.++|||.+.- .+
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt-------------------------- 226 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS-------------------------- 226 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC--------------------------
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee--------------------------
Confidence 8652 333 2888775311 111233345899999999999998652 11
Q ss_pred CCcccCHHHHHHHHHHCCCCeeEEEecCC
Q 016366 353 GGRERTKKEYTELAIAAGFKGINFASCVC 381 (390)
Q Consensus 353 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 381 (390)
....+++-|.++||++.++-..++
T Consensus 227 -----aag~VRR~L~~aGF~V~k~~G~g~ 250 (308)
T 3vyw_A 227 -----SSLSVRKSLLTLGFKVGSSREIGR 250 (308)
T ss_dssp -----CCHHHHHHHHHTTCEEEEEECC--
T ss_pred -----CcHHHHHHHHHCCCEEEecCCCCC
Confidence 123457889999999877765543
No 329
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=95.77 E-value=0.0064 Score=55.41 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=45.9
Q ss_pred hChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 47 lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|++.|...+ ++|+.|||+++|+ +...+.|+|..|+..|+|.++ .+++|++++...
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~---~~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS---ADGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC---TTSEEEECTHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCcEEehHHHH
Confidence 45778887653 7999999999999 999999999999999999973 346899987543
No 330
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.77 E-value=0.028 Score=45.82 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=50.3
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee--cccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC--SVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~--~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..++++|..+||+.+++ ++..+.++++.|+..|+|.+ .....++ .+.+|+.+..+.
T Consensus 42 ~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYSTPGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 45667778877779999999999999 99999999999999999987 4322233 366777666544
No 331
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.75 E-value=0.017 Score=54.52 Aligned_cols=67 Identities=9% Similarity=0.211 Sum_probs=45.8
Q ss_pred HHHHHHHHhhccC------CcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCC---CCCCceEEECCCCC
Q 016366 214 AMERILEHYEGFQ------NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP---SYAGVEHVGGNMFE 281 (390)
Q Consensus 214 ~~~~l~~~~~~~~------~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~---~~~rv~~~~gd~~~ 281 (390)
++..|++... .. ....|||||.|.|.++..|+++...-+++++++ +..++..+ ..++++++.+|+++
T Consensus 40 i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 40 VYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp HHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred HHHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 3455666554 33 347899999999999999998743234555554 44433332 35789999999975
No 332
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.73 E-value=0.0042 Score=51.23 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
...+|.--.++.|+..|.. |+.|+.+||+.+|+ .+..+.+.|+.|...|+|..........|++++.+
T Consensus 51 ~l~aL~~p~R~~IL~~L~~-~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~ 118 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS-GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQG 118 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG-CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHH
T ss_pred HHHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence 3556667788889999985 79999999999999 99999999999999999986422222357777644
No 333
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.72 E-value=0.005 Score=47.89 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCC--HHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 24 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELS--APEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 24 ~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t--~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
....++++..+.|...+|. .|.. |+.+ +.||++.+ |+ .+..+.+.|+.|...|+|.+... ..
T Consensus 16 ~~~~~l~~l~~~wrl~IL~---------~L~~-g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~-r~ 80 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLIIS---------VLGN-GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG-QI 80 (111)
T ss_dssp TTSSTHHHHHSTTHHHHHH---------HHTS-SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES-SS
T ss_pred HHHHHHHHHcCccHHHHHH---------HHhc-CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec-Cc
Confidence 4455666777777655554 4453 6777 99999999 99 99999999999999999987432 24
Q ss_pred cceecCccccccc
Q 016366 101 RLYALNPVSKYFV 113 (390)
Q Consensus 101 ~~y~~t~~s~~l~ 113 (390)
..|++|+.+..+.
T Consensus 81 ~~y~LT~~G~~l~ 93 (111)
T 3df8_A 81 TTYALTEKGMNVR 93 (111)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEEECccHHHHH
Confidence 4689998877655
No 334
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.69 E-value=0.0068 Score=48.00 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=44.6
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
.++.|+..|.+ |+.++.+||+.+|+ .+..+.+.|+.|...|++........-.|++++
T Consensus 47 ~rl~IL~~L~~-~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~ 104 (122)
T 1r1t_A 47 NRLRLLSLLAR-SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQD 104 (122)
T ss_dssp HHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECh
Confidence 45667777775 68999999999999 999999999999999999864211112355554
No 335
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.69 E-value=0.0078 Score=48.16 Aligned_cols=66 Identities=17% Similarity=0.307 Sum_probs=50.7
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 33 ~~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 33 YVQFGVIQVLAKSGKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 345667778877679999999999999 999999999999999999874322222 266677665544
No 336
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.64 E-value=0.014 Score=46.75 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=52.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..++++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .|.+|+.+..+.
T Consensus 32 ~~~~iL~~l~~~~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKDAPLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 45567888877679999999999999 999999999999999999875332222 377888777666
No 337
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.59 E-value=0.013 Score=47.05 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCC
Q 016366 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (390)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~ 99 (390)
..+.....+++..+-|...+|... .. |+.+..||++.+ ++ .+..|.+.|+.|+..|+|.+.....
T Consensus 12 ~~Cpi~~~l~~lg~kW~l~IL~~L---------~~-g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~ 77 (131)
T 4a5n_A 12 EGSPVEFTLDVIGGKWKGILFYHM---------ID-GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQ 77 (131)
T ss_dssp -CCHHHHHHHHHCSSSHHHHHHHH---------TT-SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred CCCcHHHHHHHHcCcCHHHHHHHH---------hc-CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCC
Confidence 347888899999999988776542 33 699999999999 99 9999999999999999998753322
Q ss_pred C---cceecCccccccc
Q 016366 100 E---RLYALNPVSKYFV 113 (390)
Q Consensus 100 ~---~~y~~t~~s~~l~ 113 (390)
+ -.|++|+.+..+.
T Consensus 78 d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 78 VPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp SSCEEEEEECTTGGGGH
T ss_pred CCCeEEEEECHhHHHHH
Confidence 1 2489999888766
No 338
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.54 E-value=0.0046 Score=50.01 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=50.5
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 37 PEQWSVLEGIEANEPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 455667777876679999999999999 999999999999999999874322232 366777666555
No 339
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=95.54 E-value=0.029 Score=46.70 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=51.4
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 45 ~~~~~iL~~L~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 45 IPQFRTLVILSNHGPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 345667888877679999999999999 9999999999999999998743322222 66777665544
No 340
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.54 E-value=0.013 Score=45.06 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
.+....++++..+.|...+|. .|.. |+.+..||++.+ |+ ++..+.+.|+.|...|+|.+.....+
T Consensus 12 ~c~~~~~l~~l~~~~~~~IL~---------~L~~-~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~d 77 (107)
T 2fsw_A 12 ECPVRKSMQIFAGKWTLLIIF---------QINR-RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEV 77 (107)
T ss_dssp TCHHHHHHHHHTSSSHHHHHH---------HHTT-SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred CCCHHHHHHHHcCccHHHHHH---------HHHh-CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 466777888888887765554 3443 589999999999 49 99999999999999999987533222
Q ss_pred ---cceecCccccccc
Q 016366 101 ---RLYALNPVSKYFV 113 (390)
Q Consensus 101 ---~~y~~t~~s~~l~ 113 (390)
-.|++|+.+..+.
T Consensus 78 ~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 78 PPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SCEEEEEECHHHHTTH
T ss_pred CCeeEEEECccHHHHH
Confidence 2488998876544
No 341
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.50 E-value=0.0079 Score=48.70 Aligned_cols=54 Identities=22% Similarity=0.221 Sum_probs=44.8
Q ss_pred HhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 53 IAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 53 L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+...+++|..+||+.+++ ++..+.+.++.|...|+|.+. ....|.+|+.+..+.
T Consensus 17 ~~~~~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 17 IEEKGYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIG 70 (142)
T ss_dssp HHHHSSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHH
T ss_pred HhhcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHH
Confidence 334468999999999999 999999999999999999863 346788888776554
No 342
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.46 E-value=0.0071 Score=53.96 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=48.9
Q ss_pred hChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+.|++.|...+ ++|+.|||+++|+ ++..+.|+|+.|+..|+|.++ .++++|++++....+.
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~--~~~~~Y~lg~~~~~lg 70 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEAL--GPAGGFRLGPALGQLI 70 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEEC--GGGCEEEECSHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--CCCCeEEECHHHHHHH
Confidence 45677776653 7999999999999 999999999999999999873 2347899987554433
No 343
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.46 E-value=0.0073 Score=53.97 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=52.8
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
.++.++..|..++++|..|||+++|+ ++..+.|.|+.|...|++.+. .....|++|+.+..+..
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDK----SEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIK 216 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHH
Confidence 35566777765579999999999999 999999999999999999864 34567999998876643
No 344
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.45 E-value=0.008 Score=48.11 Aligned_cols=65 Identities=22% Similarity=0.146 Sum_probs=50.4
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.++.++..|..+++.|..+||+.+++ ++..+.+.++.|...|+|.+.....+++ +.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 35 AQFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 35556777776679999999999999 9999999999999999998743322332 66777666554
No 345
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.44 E-value=0.0078 Score=46.80 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
.+....++++..+.|...+|. .|.. |+.+..+||+.+ ++ ++..+.+.|+.|...|+|.+.....+
T Consensus 9 ~c~~~~~l~~l~~~~~~~IL~---------~L~~-~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d 74 (112)
T 1z7u_A 9 QTSINLALSTINGKWKLSLMD---------ELFQ-GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNEL 74 (112)
T ss_dssp HHHHHHHHHTTCSTTHHHHHH---------HHHH-SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCS
T ss_pred CCCHHHHHHHHcCccHHHHHH---------HHHh-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 466677777777777665544 3444 589999999999 99 99999999999999999987533222
Q ss_pred c---ceecCccccccc
Q 016366 101 R---LYALNPVSKYFV 113 (390)
Q Consensus 101 ~---~y~~t~~s~~l~ 113 (390)
. .|++|+.+..+.
T Consensus 75 ~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 75 PPRVEYTLTPEGYALY 90 (112)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCeEEEEECHhHHHHH
Confidence 2 388888776544
No 346
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.40 E-value=0.0083 Score=47.97 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=49.7
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.++.++..|..+++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 30 ~~~~iL~~l~~~~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 30 AQVACLLRIHREPGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHHSTTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 45556777777679999999999999 9999999999999999998743222222 56666665444
No 347
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.37 E-value=0.0042 Score=50.14 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=49.4
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+++|+.+..+.
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 44556677766679999999999999 999999999999999999875332232 367777776555
No 348
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=95.36 E-value=0.014 Score=52.82 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=60.0
Q ss_pred CCcceEEEEcC------CccHHHHHHHhhCCC-CeEEEecchHHHhhCCCCCCceEEECCCCC-CCCCC-cEEEecc---
Q 016366 226 QNVERLVDVGG------GFGVTLSMITSKYPQ-IKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG-DAILMKW--- 293 (390)
Q Consensus 226 ~~~~~iLDiG~------G~G~~~~~l~~~~p~-~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~-~~p~~-D~i~~~~--- 293 (390)
+.+.+|||+|+ -.|.. .+.+..|. ..++.+|+.++...+. .+++||..+ ..... |+|++..
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~-----~~IqGD~~~~~~~~k~DLVISDMAPN 180 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDAD-----STLIGDCATVHTANKWDLIISDMYDP 180 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSS-----EEEESCGGGEEESSCEEEEEECCCCT
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCC-----eEEEccccccccCCCCCEEEecCCCC
Confidence 46789999996 67773 33345776 6899999855543222 458999765 23233 8886642
Q ss_pred ccccC------ChhHHHHHHHHHHHhCCCCcEEEEE
Q 016366 294 ILHCW------DDDHCLRILKNCYKAVPGNGKVIVM 323 (390)
Q Consensus 294 vlh~~------~d~~~~~~L~~~~~~L~pgG~lli~ 323 (390)
.-.+. ...-+..+|.=+.+.|+|||.+++-
T Consensus 181 tTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 181 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp TSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 11111 1224667888899999999999874
No 349
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.33 E-value=0.0075 Score=48.33 Aligned_cols=66 Identities=11% Similarity=0.181 Sum_probs=51.1
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 38 PTQWAALVRLGETGPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 346678888876679999999999999 999999999999999999874322222 266777665444
No 350
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.32 E-value=0.037 Score=45.08 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=48.8
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
++.++..|..++++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 4557777776679999999999999 999999999999999999874322222 256666655444
No 351
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.29 E-value=0.0097 Score=43.27 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=46.2
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
.....|.+.|..+| .|+.|||+++|+ ....+++.|..|...|+|.... ..+-.|+++..
T Consensus 17 ~~~~~IL~lL~~~g-~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~-~~PP~W~~~~~ 75 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG-ATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD-DIPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHSSST-EEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS-SSSCEEESCC-
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-CCCCcceeccC
Confidence 44566778888764 999999999999 9999999999999999998632 23345666653
No 352
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.28 E-value=0.0099 Score=42.86 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=37.1
Q ss_pred hhHHHhhc------CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 49 VFEIIAKA------GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 49 lfd~L~~~------g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
|++.|... +|.|+.|||+.+|+ .+..+++-|..|...|+|.+.
T Consensus 9 IL~~I~~~i~~~~g~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 9 IISIVQERQNMDDGAPVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 45555554 69999999999999 888999999999999999863
No 353
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=95.27 E-value=0.0082 Score=45.57 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=43.7
Q ss_pred HHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
.-.++.|+..|...|+.|+.|||+++|+ .+..+.+.|+.|... ++.....+....|++++
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~ 85 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINN 85 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEEETTEEEEECCC
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheEeCcEEEEEECh
Confidence 3455566644443469999999999999 999999999999999 99753222222466654
No 354
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=95.24 E-value=0.0094 Score=48.45 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=49.6
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+++|+.+..+.
T Consensus 43 ~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 43 PQFVALQWLLEEGDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 35567778877679999999999999 999999999999999999874322222 266677665544
No 355
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.24 E-value=0.03 Score=45.09 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=50.1
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|. .+++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~-~~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 37 YLDFLVLRATS-DGPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHHT-TSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHh-cCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 34666777887 679999999999999 999999999999999999874332222 256676665444
No 356
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.23 E-value=0.012 Score=47.59 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=50.7
Q ss_pred HHHHhChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 43 AAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 43 ~a~~lglfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
...++.++..|.. +|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 34 ~~~~~~iL~~l~~~~~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 34 QFSQLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 3456778888887 679999999999999 999999999999999999874322222 266777665444
No 357
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=95.23 E-value=0.012 Score=47.62 Aligned_cols=65 Identities=18% Similarity=0.364 Sum_probs=48.1
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.|+..|..+| +|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~~-~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 38 NTQEHILMLLSEES-LTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 45667788888765 999999999999 999999999999999999874322222 366676665444
No 358
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.23 E-value=0.023 Score=45.74 Aligned_cols=65 Identities=8% Similarity=0.167 Sum_probs=51.3
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+++ |..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+++|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 37 YLDFSILKATSEEPR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHHSCE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence 345678888887666 99999999999 999999999999999999875332222 377788776555
No 359
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=95.23 E-value=0.013 Score=52.45 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=46.9
Q ss_pred hChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 47 lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
+.|++.|...+ ++|+.|||+++|+ +...+.|+|+.|+..|+|... .++.|++++..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~---~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK---KDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC---CCCcEEECHHH
Confidence 45677777654 7999999999999 999999999999999999862 35789988754
No 360
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.21 E-value=0.0062 Score=49.72 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=49.3
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 456677788877789999999999999 999999999999999999874332233 266677666544
No 361
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.19 E-value=0.013 Score=47.23 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=48.4
Q ss_pred HHhChhHHH-hhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L-~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..| ...+++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~~~~~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 38 ARWLVLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp THHHHHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 345577777 55579999999999999 999999999999999999874322222 255666555443
No 362
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.17 E-value=0.013 Score=47.24 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=50.8
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 37 YPQFLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 345667778877678999999999999 999999999999999999874332222 356676665444
No 363
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.16 E-value=0.0093 Score=47.83 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=49.8
Q ss_pred HHhChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+| ++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence 4556777777665 9999999999999 999999999999999999875332333 256677666555
No 364
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=95.13 E-value=0.0096 Score=48.78 Aligned_cols=65 Identities=6% Similarity=0.093 Sum_probs=49.1
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 44 ~~~~iL~~l~~~~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 44 PEWRVLACLVDNDAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHHSSCSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 45567777877679999999999999 999999999999999999864222222 366777666554
No 365
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=95.12 E-value=0.01 Score=47.80 Aligned_cols=64 Identities=9% Similarity=0.045 Sum_probs=49.4
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
++.++..|..++++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 31 ~~~iL~~l~~~~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 31 QYLYLVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHCcCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 4456777777678999999999999 9999999999999999998753322222 66677665444
No 366
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=95.11 E-value=0.0081 Score=49.55 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=48.3
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
+.++..|..++++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 53 ~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYREDGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 445677766679999999999999 999999999999999999875332233 366777666554
No 367
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.10 E-value=0.011 Score=48.21 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=50.0
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 41 ~~~~iL~~l~~~~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 41 GQRAILEGLSLTPGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 35567778877679999999999999 999999999999999999874322222 356666655444
No 368
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.09 E-value=0.0099 Score=47.95 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=50.9
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 33 ~~~~~iL~~l~~~~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 33 PAQFDILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 345667777776679999999999999 999999999999999999874322222 366777666544
No 369
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.08 E-value=0.013 Score=42.79 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=40.5
Q ss_pred HHhChhHHHhhc--CCCCHHHHHHHh-----ccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKA--GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~eLa~~~-----~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+..|++.|... +++|++||++.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEE
Confidence 345688888754 589999999999 88 899999999999999999864
No 370
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.07 E-value=0.012 Score=47.21 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHh-ccCCCCCCCcHHHHHHHHhcCcceeecccCCC
Q 016366 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (390)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~-~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~ 100 (390)
.+....++++..+.|...+|. .|.. |+.+..||++.+ |+ ++..+.+.|+.|+..|+|.+.....+
T Consensus 22 ~c~~~~~l~~l~~~w~l~IL~---------~L~~-g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d 87 (131)
T 1yyv_A 22 QCPSREVLKHVTSRWGVLILV---------ALRD-GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVV 87 (131)
T ss_dssp TCTHHHHHHHHHSHHHHHHHH---------HGGG-CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSS
T ss_pred CCCHHHHHHHHcCCcHHHHHH---------HHHc-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCC
Confidence 456677777777777654443 3443 699999999999 79 99999999999999999987533222
Q ss_pred c---ceecCccccccc
Q 016366 101 R---LYALNPVSKYFV 113 (390)
Q Consensus 101 ~---~y~~t~~s~~l~ 113 (390)
. .|++|+.+..+.
T Consensus 88 ~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 88 PPHVEYSLTPLGEQVS 103 (131)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCeEEEEECccHHHHH
Confidence 2 488998776554
No 371
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.07 E-value=0.013 Score=48.03 Aligned_cols=66 Identities=18% Similarity=0.144 Sum_probs=50.9
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..++++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 44 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 44 TTELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 446677888877679999999999999 999999999999999999874322222 266676665544
No 372
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=95.06 E-value=0.012 Score=48.55 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=48.5
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC---cceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~---~~y~~t~~s~~l~ 113 (390)
.++.++..|..++++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..+.+|+.+..+.
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 45567888877679999999999999 99999999999999999986422112 2366666665444
No 373
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=95.05 E-value=0.01 Score=48.26 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=42.0
Q ss_pred HHhChhHHHhhc--CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+ +++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 42 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 42 QQGRMIGYIYENQESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 345567777765 69999999999999 999999999999999999874322232 356676666554
No 374
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.05 E-value=0.028 Score=44.72 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
+++|.++||+++++ ++..+.++|+.|...|+|.... ...+.|.+++..
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~-g~~ggy~L~~~~ 72 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR-GAYGGYVLGSEP 72 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESSCG
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC-CCCCceEeCCCH
Confidence 48999999999999 9999999999999999998631 124678877643
No 375
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=95.01 E-value=0.0069 Score=54.70 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=47.5
Q ss_pred hChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 47 lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|++.|... +++|+.|||+++|+ +...+.|+|..|+..|+|..+ .+.++|++++...
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~--~~~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQV--EGARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEC--SSSSEEEECTTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEcCHHHH
Confidence 3467777653 58999999999999 999999999999999999873 2347899987543
No 376
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.00 E-value=0.017 Score=46.23 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=49.0
Q ss_pred HHhChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|...+ ++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 3455677777665 8999999999999 999999999999999999874332222 355666655444
No 377
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=94.99 E-value=0.031 Score=46.10 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=50.0
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.++..|..+|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 54 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 54 PKLRLLSSLSAYGELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence 35557778876679999999999999 999999999999999999875332222 366777666555
No 378
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=94.94 E-value=0.0075 Score=47.96 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=49.7
Q ss_pred HHhChhHHHhhc--CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.++.++..|..+ +++|..+||+.+++ ++..+.++++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 38 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 38 EEFAVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345567777665 68999999999999 9999999999999999998743333332 56677666544
No 379
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=94.91 E-value=0.1 Score=52.02 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=69.9
Q ss_pred HHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-------------CCCeEEEecc-hHHHhhCCC------CCCce
Q 016366 214 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPS------YAGVE 273 (390)
Q Consensus 214 ~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-------------p~~~~~~~Dl-~~~~~~a~~------~~rv~ 273 (390)
++.-+++.+. .....+|+|-+||+|.++....+.. ......++|+ +.+...|+- .+.-.
T Consensus 205 Vv~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~ 283 (530)
T 3ufb_A 205 VVRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPR 283 (530)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCE
T ss_pred HHHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccc
Confidence 3444455554 4556799999999999998766532 1245778887 666655542 23456
Q ss_pred EEECCCCC-CCC------CCcEEEecccccc---------CC-----hhHHHHHHHHHHHhCC-------CCcEEEEEec
Q 016366 274 HVGGNMFE-SVP------EGDAILMKWILHC---------WD-----DDHCLRILKNCYKAVP-------GNGKVIVMNS 325 (390)
Q Consensus 274 ~~~gd~~~-~~p------~~D~i~~~~vlh~---------~~-----d~~~~~~L~~~~~~L~-------pgG~lli~e~ 325 (390)
+..+|... +.. ..|+|+++=-+.. ++ ......++.++.+.|+ |||++.++-+
T Consensus 284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 77888775 322 1299988744421 11 1112357888888887 6999888644
No 380
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=94.91 E-value=0.013 Score=44.12 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=47.2
Q ss_pred hhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 49 lfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
|+..+.. | ++..+||..+|+ +++.+...++.|...|++.. ..+.|.+|+.+..+..
T Consensus 13 IL~~i~~-~-~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~----~~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 13 ILEACKS-G-SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQ----EGKQYMLTKKGEELLE 68 (95)
T ss_dssp HHHHHTT-C-BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECHHHHHHHH
T ss_pred HHHHHHc-C-CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEE----ECCeeEEChhHHHHHH
Confidence 4445554 4 899999999999 99999999999999999996 3567999999987663
No 381
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.89 E-value=0.013 Score=47.93 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=50.7
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCcccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~ 114 (390)
.++.++..|..++++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+..
T Consensus 48 ~~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 48 PQYLVMLVLWETDERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 45667778877679999999999999 999999999999999999874322222 3677887776554
No 382
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.80 E-value=0.0099 Score=47.71 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
..++.++..|..++++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 36 ~~~~~iL~~l~~~~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 36 EQQWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 345667778877679999999999999 9999999999999999998743222222 66676665444
No 383
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.79 E-value=0.014 Score=48.59 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=49.1
Q ss_pred HHHhChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|.. .+++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 53 ~~q~~vL~~L~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 53 QTHWVTLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence 345667777776 468999999999999 999999999999999999875332232 366777666555
No 384
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=94.78 E-value=0.013 Score=48.35 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=50.5
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.|+..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 52 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 52 TAKMRALAILSAKDGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345667888887779999999999999 999999999999999999874322222 266676665444
No 385
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=94.78 E-value=0.033 Score=46.21 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
+++|+++||+.+++ ++..++++|..|...|+|...+ ..+|.|.+++
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR-GAHGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-STTCEEEECS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec-CCCCceEecC
Confidence 48999999999999 9999999999999999998643 2356788765
No 386
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=94.69 E-value=0.072 Score=43.59 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=47.9
Q ss_pred HHhChhHHH-hhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 45 IQLGVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L-~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.++.++..| ...+++|..+||+.+++ ++..+.++++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 456678888 44569999999999999 9999999999999999998743222222 66677665544
No 387
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.55 E-value=0.048 Score=45.35 Aligned_cols=49 Identities=27% Similarity=0.440 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+++|.++||+++++ ++..++++|..|...|+|...+ ..+|.|++.+...
T Consensus 27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar~p~ 75 (162)
T 3k69_A 27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTV-GKNGGYQLDLALA 75 (162)
T ss_dssp SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEEC-STTCEEECCSCGG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec-CCCCCeEecCChh
Confidence 38999999999999 9999999999999999997532 2456788876443
No 388
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.54 E-value=0.024 Score=44.30 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=40.8
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
..++.|+..|.+ ++.|+.+||+.+++ ++..+.+.|+.|...|++...
T Consensus 32 ~~~~~il~~L~~-~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 32 PSRLMILTQLRN-GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHHHH-CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 345667777776 68999999999999 999999999999999999753
No 389
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.50 E-value=0.013 Score=47.48 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=52.0
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCcccccccc
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~ 114 (390)
..++.++..|..+|++|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+..
T Consensus 40 ~~~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 40 YPQYLALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 345667777776679999999999999 999999999999999999874322222 2677887776654
No 390
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=94.49 E-value=0.025 Score=41.05 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=40.4
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+..|++.|...++.|+.||++.++..+.-.+..+.++|+.|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 456677788766799999999999731001678899999999999999874
No 391
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=94.38 E-value=0.015 Score=43.59 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=45.4
Q ss_pred hhHHHhhcC-CCCHHHHHHHhccCCCCCCCc-HHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 49 VFEIIAKAG-ELSAPEIAAQLQAQNVKAPMM-LDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 49 lfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~-l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
++..|..+| ++|..+||+.+++ ++.. +.+.++.|+..|+|..+ ..+. .+++|+.+..+.
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~--~~drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEE--TLSYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEE--EEETTEEEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecC--CCCCCeEEEEECHhHHHHH
Confidence 455566556 8999999999999 9999 99999999999999842 2222 366777666554
No 392
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=94.38 E-value=0.026 Score=46.07 Aligned_cols=80 Identities=16% Similarity=0.138 Sum_probs=59.2
Q ss_pred HhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCC
Q 016366 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (390)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~ 99 (390)
...+...+.+++....|...+|.. |.. |+.+..||++.+++ ++..+.+.|+.|+..|+|.+.....
T Consensus 9 ~~~c~~~~~l~~l~~~w~l~IL~~---------L~~-g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~ 74 (146)
T 2f2e_A 9 QASCPVARPLDVIGDGWSMLIVRD---------AFE-GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAES 74 (146)
T ss_dssp TCSCTTTTTHHHHCSSSHHHHHHH---------HHT-TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred CCCCcHHHHHHHhCCchHHHHHHH---------HHh-CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCC
Confidence 334556667777777777655543 333 58999999999999 9999999999999999998743211
Q ss_pred --CcceecCccccccc
Q 016366 100 --ERLYALNPVSKYFV 113 (390)
Q Consensus 100 --~~~y~~t~~s~~l~ 113 (390)
.-.|++|+.+..+.
T Consensus 75 d~~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 75 GSHQEYRLTDKGRALF 90 (146)
T ss_dssp SSCEEEEECHHHHTTH
T ss_pred CCeEEEEECchHHHHH
Confidence 13588888776544
No 393
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.35 E-value=0.042 Score=44.70 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
+++|+++||+++++ ++..++++|..|...|+|...+ ..+|.|++++..
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar~p 74 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR-GAKGGYQLRVPA 74 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS-SSSSEEEESSCG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC-CCCCCeeecCCc
Confidence 38999999999999 9999999999999999997532 234678877643
No 394
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=94.22 E-value=0.041 Score=50.56 Aligned_cols=52 Identities=23% Similarity=0.218 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS 268 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~ 268 (390)
.++..++..+. .+...|||++||+|.++.++++.. .+++++|+ +.+++.+++
T Consensus 223 ~l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 223 ELAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHH
Confidence 34455666554 456799999999999999988764 57888888 778877764
No 395
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=94.22 E-value=0.021 Score=46.37 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=47.7
Q ss_pred HHHhChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 44 AIQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
..++.++..|..++ ++|..+||+.+++ ++..+.++++.|+..|+|.+.....+++ +.+|+.+..+.
T Consensus 39 ~~q~~vL~~l~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 39 VRSYSVLVLACEQAEGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHHSTTCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence 44566777776543 7899999999999 9999999999999999998743322222 66777766555
No 396
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=94.21 E-value=0.046 Score=44.71 Aligned_cols=62 Identities=11% Similarity=0.091 Sum_probs=45.2
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
.++++.+.+... .. +++|+++||+++++ ++..++++|..|...|+|...+ +.+.|.+++...
T Consensus 15 yAl~~L~~La~~---~~-~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r--G~GGy~L~~~p~ 76 (149)
T 1ylf_A 15 IAVHILSILKNN---PS-SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR--GPGGAGLLKDLH 76 (149)
T ss_dssp HHHHHHHHHHHS---CG-GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESSCGG
T ss_pred HHHHHHHHHHhC---CC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc--CCCceEeCCChh
Confidence 455555544331 22 38999999999999 9999999999999999998642 256788876433
No 397
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=94.21 E-value=0.032 Score=45.47 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=45.9
Q ss_pred hChhHHHh--hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 47 LGVFEIIA--KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~--~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
+.++..|. .+|++|..+||+.+++ ++..+.++++-|+..|+|.+.....+++ .++|+.+..+.
T Consensus 38 ~~vL~~L~~~~~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 38 YEALVLLTFSKSGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHHHTSGGGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 33445553 2358999999999999 9999999999999999998754433333 66777776554
No 398
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=94.19 E-value=0.074 Score=45.21 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=53.3
Q ss_pred HHHHhChhHHHhh--cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCcccccccc
Q 016366 43 AAIQLGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (390)
Q Consensus 43 ~a~~lglfd~L~~--~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~ 114 (390)
...++.++..|.. .|++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+++|+.+..+..
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 4566777888875 358999999999999 999999999999999999875433332 3677877765554
No 399
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.19 E-value=0.028 Score=42.69 Aligned_cols=47 Identities=15% Similarity=0.371 Sum_probs=40.6
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.++.|+..|..++++|..+||+.+++ ++..+.+.|+.|...|+|...
T Consensus 21 ~~~~il~~l~~~~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 35556677765579999999999999 999999999999999999863
No 400
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=94.19 E-value=0.017 Score=51.97 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=48.3
Q ss_pred hChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 47 lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+.|++.|... +++|+.|||+++|+ ++..+.|+|+.|+..|+|.. +++.|++++....+.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~----~~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAG----SGGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----CCCEEEEcHHHHHHH
Confidence 3456666543 48999999999999 99999999999999999986 358899988655444
No 401
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=94.09 E-value=0.022 Score=51.31 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=45.2
Q ss_pred hChhHHHhh-cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccc
Q 016366 47 LGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (390)
Q Consensus 47 lglfd~L~~-~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s 109 (390)
+.|++.|.. .+++|+.|||+++|+ +...+.|+|+.|+..|+|..+ .+++|++++..
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~---~~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSR---ADGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCeEEecHHH
Confidence 345666653 358999999999999 999999999999999999863 23389998754
No 402
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=93.96 E-value=0.052 Score=44.39 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=48.6
Q ss_pred HhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
++.++-.|... ++.+..+||+.+++ ++..+.++++.|+..|+|.+..++.+++ .++|+.+..+.
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 34456666543 36788999999999 9999999999999999998754434433 66777776555
No 403
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=93.94 E-value=0.018 Score=52.10 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=46.5
Q ss_pred hChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 47 lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
+.|++.|... +++|+.|||+++|+ +...+.|+|+.|+..|+|.. ++++|++++...
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~----~~~~Y~Lg~~~~ 80 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL----TRATARRFLLTLVELGYVAT----DGSAFWLTPRVL 80 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE----SSSEEEECGGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----cCCEEEEcHHHH
Confidence 3466666542 48999999999999 99999999999999999986 358899987543
No 404
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=93.86 E-value=0.025 Score=47.01 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=48.0
Q ss_pred HHHhChhHHHhhc--CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 44 AIQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~--g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
..++.++..|..+ +++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 46 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 46 AQQYNTLRLLRSVHPEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHH
Confidence 3456677777764 49999999999999 999999999999999999875433333 366777666555
No 405
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.79 E-value=0.051 Score=44.51 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=44.5
Q ss_pred HHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 52 ~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
.|..+|+.|..+||+.+++ ++..+.+.++.|...|+|.+. .+..+.+|+.+..+.
T Consensus 48 ~l~~~~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 48 LIREVGEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI---PWRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE---TTTEEEECHHHHHHH
T ss_pred HHHhCCCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe---cCCceEEChhHHHHH
Confidence 4544468999999999999 999999999999999999862 345677887766444
No 406
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=93.62 E-value=0.04 Score=44.16 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=42.4
Q ss_pred cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 56 ~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+++.|..+||+++++ ++..+.+.++.|...|+|.+. ...|.+|+.+..+.
T Consensus 29 ~~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~----~~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK----EDGVWITNNGTRSI 78 (139)
T ss_dssp TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec----CCeEEEChhHHHHH
Confidence 358999999999999 999999999999999999863 26788888766443
No 407
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=93.58 E-value=0.037 Score=41.39 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=49.6
Q ss_pred HhChhHHHhhcCCCCHHHHHH-HhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 46 QLGVFEIIAKAGELSAPEIAA-QLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~-~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
+..|+-.|.++++.|+.+||+ .+++ +...+.|-++.|...|+|.. ..+| +.+|+.+..+..
T Consensus 18 QfsiL~~L~~~~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~---~~~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKKDFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEK---SGDG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHSTTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEE---ETTE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeec---CCCC-eeeCHhHHHHHH
Confidence 344566677778999999999 9999 99999999999999999983 2334 888888776653
No 408
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.47 E-value=0.023 Score=49.31 Aligned_cols=65 Identities=14% Similarity=-0.032 Sum_probs=49.9
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.|+..|..++++|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 49 ~q~~iL~~L~~~~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 49 NEHHILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 35566777776679999999999999 999999999999999999875332222 366777776555
No 409
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=93.35 E-value=0.021 Score=43.39 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=40.5
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.++.|+..|.+.|++|+.||+++++..+.-.+..+.++|+-|+..|+|.+.
T Consensus 36 ~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 36 AELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp SCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 355677888766799999999999851111467899999999999999874
No 410
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=93.12 E-value=0.03 Score=41.92 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=39.8
Q ss_pred CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 59 ~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
+|..+||+++++ ++..+.++++.|...|+|.. ..++ .+++|+.+..+.
T Consensus 31 ~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~---~~d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 31 VYIQYIASKVNS----PHSYVWLIIKKFEEAKMVEC---ELEGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp EEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEE---EEETTEEEEEECHHHHHHH
T ss_pred cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccC---CCCCCeEEEEEChhHHHHH
Confidence 999999999999 99999999999999999943 2233 478888776554
No 411
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=92.93 E-value=0.051 Score=42.90 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=39.8
Q ss_pred HhChhHHHhhcC-C-CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 46 QLGVFEIIAKAG-E-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 46 ~lglfd~L~~~g-~-~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..|+..|..++ | +|+.|||+++++ +...+.|.|+.|...|+|.+.
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 556777777654 4 899999999999 999999999999999999863
No 412
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=92.85 E-value=0.037 Score=46.65 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=47.7
Q ss_pred HHhChhHHHhhcCC---CCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCc---ceecCccccccc
Q 016366 45 IQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g~---~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 113 (390)
.++.|+..|..+++ +|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 35667788876553 999999999999 999999999999999999864221222 366666665444
No 413
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=92.75 E-value=0.063 Score=38.01 Aligned_cols=55 Identities=13% Similarity=0.273 Sum_probs=45.3
Q ss_pred HHhChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 45 IQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 45 ~~lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
.+-.|++.|.+.| |+++.+||+++|+ +..-+...|..|...|.|.. ...-.|.++
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~S---PkRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSL---TSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE---EETTEEEES
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccC---CCCceeeCC
Confidence 3556788888765 9999999999999 99999999999999999875 334466665
No 414
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=92.75 E-value=0.084 Score=43.04 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=41.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|+..|..+|+.|..|||+++|+ .+..+.+.++.|...|++.+
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRAGL----SVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 35567888887779999999999999 99999999999999999974
No 415
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=92.73 E-value=0.15 Score=41.47 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=38.9
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~ 110 (390)
. |+++||+++++ ++..++++|..|...|+|...+ . .+.|++++...
T Consensus 24 ~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r-G-~GGy~Lar~p~ 69 (145)
T 1xd7_A 24 T-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA-G-VPGASLKKDPA 69 (145)
T ss_dssp C-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS-S-SSSCEESSCGG
T ss_pred C-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec-C-CCCceecCCHH
Confidence 5 99999999999 9999999999999999997542 2 66788876443
No 416
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=92.71 E-value=0.086 Score=42.70 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=41.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|++.|..+++.|..|||+++|+ .+..+.+.++.|...|++.+
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 35567888887779999999999999 99999999999999999974
No 417
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=92.68 E-value=0.088 Score=45.43 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=48.9
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccC-----CCcceecCccc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVS 109 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~-----~~~~y~~t~~s 109 (390)
.+|..-.++.|+..|.. ||.|+.+||+.+|+ ++..+.+.|+.|...|+|...... ..-.|++++..
T Consensus 10 kaL~~~~rl~IL~~L~~-~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK-RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHHSHHHHHHHHHHHH-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence 34444556666777765 69999999999999 999999999999999999864321 11237776543
No 418
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=92.61 E-value=0.057 Score=47.09 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=43.9
Q ss_pred cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 56 ~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+++++..+||+.+++ ++..+.+.++.|...|+|.+. ....+.+|+.+..+.
T Consensus 18 ~~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD---KKAGYLLTDLGLKLV 68 (214)
T ss_dssp CSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe---cCCCeEECHHHHHHH
Confidence 469999999999999 999999999999999999873 345678888777555
No 419
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=92.31 E-value=0.077 Score=43.20 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=41.6
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|+..|..+++.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 45678888887779999999999999 99999999999999999974
No 420
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=92.22 E-value=0.11 Score=43.06 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=41.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|++.|..+++.|..|||+++|+ .+..+.+.++.|...|++.+
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEee
Confidence 35567888887789999999999999 99999999999999999984
No 421
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=92.01 E-value=0.11 Score=38.57 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=39.3
Q ss_pred HhChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 46 QLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 46 ~lglfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
++.|+..|...| +++..+||+++++ +...+.++|+.|...|+|.+
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 455677777633 8999999999999 99999999999999999985
No 422
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=91.75 E-value=0.098 Score=42.04 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=37.2
Q ss_pred ChhHHHh-hcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 48 GVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 48 glfd~L~-~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.++..|. ..+++|..+||+++|+ ++..+.+.++.|+..|+|.+.
T Consensus 30 ~il~~L~~~~~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3455553 2369999999999999 999999999999999999864
No 423
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=91.69 E-value=0.046 Score=53.71 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=51.4
Q ss_pred HHHhChhHHHhhc--CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 44 AIQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 44 a~~lglfd~L~~~--g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.-++.|+..|.++ +++|..|||+++++ ++..+.|+++-|+..|+|.+.....++| ..+|+.+..+.
T Consensus 404 ~~q~~vl~~l~~~~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 404 YEEIYILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 3456677888777 78999999999999 9999999999999999998865433433 55566655443
No 424
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.50 E-value=0.11 Score=39.19 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=33.6
Q ss_pred cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 56 ~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
++++|..|||+.+|+ ++..+.+.|+.|...|+|.+.
T Consensus 34 ~~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 34 EKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp CSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 469999999999999 999999999999999999864
No 425
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=91.40 E-value=0.15 Score=42.74 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=41.3
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|+..|..+++.|..|||+++|+ .+..+.+.++.|...|++..
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQLKK----PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 45567888887789999999999999 99999999999999999974
No 426
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=91.30 E-value=0.061 Score=42.05 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=38.9
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
++.|+..|..++++|..+||+.++..+.-.+..+.++|+.|+..|+|.+.
T Consensus 12 ~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 12 EWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEE
Confidence 44566666655799999999999930000689999999999999999874
No 427
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=91.26 E-value=0.13 Score=41.91 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=41.3
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|+..|..+++.|..|||+++|+ .+..+.+.++.|...|++.+
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADILNT----TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 45568888887789999999999999 99999999999999999974
No 428
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=91.22 E-value=0.13 Score=42.05 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=41.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|+..|.++++.|..|||+++|+ .+..+.+.++.|...|++..
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcce
Confidence 35567888887779999999999999 99999999999999999984
No 429
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=91.19 E-value=0.11 Score=42.35 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|+..|..+|+.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 35567888887789999999999999 99999999999999999974
No 430
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=91.09 E-value=0.091 Score=41.21 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=41.2
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.++.|+..|..+|++|..|||++++.....++..+.++|+-|+..|+|.+.
T Consensus 11 ~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 456677888877899999999999741111688999999999999999874
No 431
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=91.04 E-value=0.13 Score=42.65 Aligned_cols=46 Identities=11% Similarity=0.215 Sum_probs=42.0
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+..|++.|.++|++|..+||+++|+ .+..+.+-++.|...|++..
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 45678899988789999999999999 99999999999999999973
No 432
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=90.78 E-value=0.097 Score=46.80 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=50.7
Q ss_pred HHhChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
.++.++..|..++ ++|..|||+++++ ++..+.++++-|+..|+|.+..+..+++ ..+|+.+..+.
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 4556777777654 5999999999999 9999999999999999999865444443 55677666554
No 433
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=90.68 E-value=0.087 Score=40.40 Aligned_cols=45 Identities=27% Similarity=0.377 Sum_probs=37.9
Q ss_pred HhChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 46 ~lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
++.|+..+...| ++|..+||+.+|+ +...+++.|..|...|+|..
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~ 65 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSY 65 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 345666664335 8999999999999 99999999999999999975
No 434
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=90.67 E-value=0.15 Score=42.60 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=42.2
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
..+..|+..|..++..|..|||+++|+ .+..+.+.++.|...|++..
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 356678888887789999999999999 99999999999999999974
No 435
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=90.64 E-value=0.14 Score=41.14 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=39.9
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+..|+..|..+++.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEec
Confidence 4567778876678999999999999 99999999999999999974
No 436
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=90.60 E-value=0.11 Score=42.27 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=40.5
Q ss_pred HhChhHHHhhc-----CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 46 QLGVFEIIAKA-----GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 46 ~lglfd~L~~~-----g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
++.++..|..+ +++|..+||+.+++ ++..+.++++.|+..|+|... ...+++ .++|+.+..+.
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~-~~~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM-AGADARCKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee-CCCCCCeeEEEECHHHHHHH
Confidence 34455555543 36899999999999 999999999999999999542 222222 55666665544
No 437
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=90.35 E-value=0.17 Score=40.55 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=40.9
Q ss_pred HHhChhHHHhh-cCCCCHHHHHHHhc----cCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAK-AGELSAPEIAAQLQ----AQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~-~g~~t~~eLa~~~~----~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.++.|+..|.. ++++|+.||++.++ + ++..+.++|+-|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~----~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDL----AYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 45667788876 47999999999998 6 888999999999999999874
No 438
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=90.32 E-value=0.23 Score=42.45 Aligned_cols=51 Identities=10% Similarity=0.230 Sum_probs=44.1
Q ss_pred HHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
++....+..|+..|.+ |+.|..+||+++|+ .+..+.+.++.|...|++...
T Consensus 16 ~l~d~~~~~IL~~L~~-~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKILKLLRN-KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3344567778888885 79999999999999 999999999999999999864
No 439
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=90.19 E-value=0.053 Score=47.89 Aligned_cols=67 Identities=7% Similarity=0.166 Sum_probs=51.3
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee-cccCC-----CcceecCcccc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC-SVSGG-----ERLYALNPVSK 110 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~-~~~~~-----~~~y~~t~~s~ 110 (390)
.+|..-.++.|+..|.. ||+|+.+||+.+|+ .+..+.+.|+.|...|+|.. ..... ...|++++.+.
T Consensus 7 kaL~~~~R~~IL~~L~~-g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 7 YILGNKVRRDLLSHLTC-MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHHTSHHHHHHHHHHTT-TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 44555567778888886 79999999999999 99999999999999999986 21111 12477777554
No 440
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=90.07 E-value=0.3 Score=36.57 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~ 96 (390)
++.+..+||+++++ +...|.|.|..|...|+|.+..
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~ 70 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSV 70 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeec
Confidence 57899999999999 9999999999999999998753
No 441
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=90.04 E-value=0.41 Score=42.80 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=64.3
Q ss_pred CcceEEEEcCCccHHHHHHHhh-------CCCCeEEEecc----hHH------------------------Hh-------
Q 016366 227 NVERLVDVGGGFGVTLSMITSK-------YPQIKAVNFDL----PHV------------------------VQ------- 264 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~-------~p~~~~~~~Dl----~~~------------------------~~------- 264 (390)
-++.|+|+|+-.|..+..++.. .++-++.++|. |+. ++
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 4578999999999988886542 46778899983 321 11
Q ss_pred hCCC----CCCceEEECCCCCCC-------CCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 265 DAPS----YAGVEHVGGNMFESV-------PEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 265 ~a~~----~~rv~~~~gd~~~~~-------p~~--D~i~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
..+. .++|+++.|++.+-+ |.. |++++-.=. -+.....|..+...|+|||.+++-|.
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCCCcEEEEcCC
Confidence 0111 267999999997622 322 777666522 23355789999999999998876553
No 442
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=89.79 E-value=0.16 Score=44.55 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcccccccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 114 (390)
++.|..++|+++++ .+..+.+.++.|...|+|.+...+....+++|+.+..+..
T Consensus 26 ~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHH
Confidence 46899999999999 9999999999999999999742222456788888776663
No 443
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=89.42 E-value=0.25 Score=42.24 Aligned_cols=39 Identities=28% Similarity=0.226 Sum_probs=33.8
Q ss_pred HHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 52 IIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 52 ~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.+.++| |.|..|||+++|+ ....+.+.|+.|...|++.+
T Consensus 17 ~~~~~g~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 17 FIEKNGYPPSVREIARRFRI----TPRGALLHLIALEKKGYIER 56 (196)
T ss_dssp HHHHHSSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHhCCCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEe
Confidence 344445 8999999999999 77789999999999999985
No 444
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=89.17 E-value=0.57 Score=36.37 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=51.9
Q ss_pred HHHHHHHhChhHHHhhcCCCCHHHHHHHhc--------cCCCCCC-CcHHHHHHHHhcCcceeecccCCC----cceecC
Q 016366 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQ--------AQNVKAP-MMLDRMLRLLVSHRVLECSVSGGE----RLYALN 106 (390)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~eLa~~~~--------~~~~~~~-~~l~r~L~~L~~~gll~~~~~~~~----~~y~~t 106 (390)
++....++-|+..|.. +|.+.-+|++.+. + ++ ..+.+.|+-|...|+|.......+ ..|++|
T Consensus 9 ~~~~~~~~~IL~~L~~-~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT 83 (118)
T 2esh_A 9 FRGWWLASTILLLVAE-KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRIT 83 (118)
T ss_dssp HHHHHHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEEC
T ss_pred cccchHHHHHHHHHHc-CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEC
Confidence 3445566677778876 5999999999984 6 88 999999999999999976432111 248888
Q ss_pred ccccccc
Q 016366 107 PVSKYFV 113 (390)
Q Consensus 107 ~~s~~l~ 113 (390)
+.+....
T Consensus 84 ~~G~~~l 90 (118)
T 2esh_A 84 PQGKLYL 90 (118)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 8877554
No 445
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=89.10 E-value=0.15 Score=40.43 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=32.0
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+.|.++||+++++ ++..+.+.++.|...|+|.+.
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 5899999999999 999999999999999999873
No 446
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=87.94 E-value=0.53 Score=32.45 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=39.6
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCc-HHHHHHHHhcCcceeec
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMM-LDRMLRLLVSHRVLECS 95 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~-l~r~L~~L~~~gll~~~ 95 (390)
+-.|++.|..+||.++=.||+++|+ .... +-+.|..|...|+|..+
T Consensus 12 ee~I~~fL~~~Gp~~AL~IAK~LGl----ktAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDNGPQRALVIAQALGM----RTAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTC----CSGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcCCchHHHHHHHhCc----chhhhcCHHHHHHHHccCcCCC
Confidence 5568899998899999999999999 4444 88999999999999753
No 447
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=87.86 E-value=0.16 Score=42.94 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=52.3
Q ss_pred HHHHHHHHHhChhHHHhhcCCCCHHHHHHHhc-cCCCCCCCcHHHHHHHHhcCcceeecccC--C---CcceecCccccc
Q 016366 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSG--G---ERLYALNPVSKY 111 (390)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~-~~~~~~~~~l~r~L~~L~~~gll~~~~~~--~---~~~y~~t~~s~~ 111 (390)
..+|.--.++.|+..|.+ |+.|+.+||+.++ + ....+.+.|+.|...|+|...... . ...|++++.+..
T Consensus 17 ~~~La~P~Rl~il~~L~~-~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~ 91 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLIG-RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGD 91 (182)
T ss_dssp HHHTTSHHHHHHHHHTTT-SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTT
T ss_pred HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccccc
Confidence 345555678888999986 6999999999996 8 888999999999999999753211 1 234777765543
Q ss_pred c
Q 016366 112 F 112 (390)
Q Consensus 112 l 112 (390)
+
T Consensus 92 ~ 92 (182)
T 4g6q_A 92 A 92 (182)
T ss_dssp S
T ss_pred C
Confidence 3
No 448
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=87.67 E-value=2.3 Score=39.01 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=56.2
Q ss_pred cceEEEEcCCc--cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CCCCCcEEEeccccccCChhHH
Q 016366 228 VERLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEGDAILMKWILHCWDDDHC 303 (390)
Q Consensus 228 ~~~iLDiG~G~--G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~p~~D~i~~~~vlh~~~d~~~ 303 (390)
..+|.=||+|. +.++..+.+.....+++++|. ++.++.+.+..-+.-...|..+ ....+|+|+++- |....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 36899999884 345556666544347888887 5566665544333223334333 234459988664 44456
Q ss_pred HHHHHHHHHhCCCCcEEE
Q 016366 304 LRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 304 ~~~L~~~~~~L~pgG~ll 321 (390)
.++++++...++||..++
T Consensus 108 ~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVT 125 (314)
T ss_dssp HHHHHHHHHHSCTTCEEE
T ss_pred HHHHHHHhhccCCCcEEE
Confidence 688999999999987544
No 449
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=87.50 E-value=0.35 Score=39.43 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=50.3
Q ss_pred HHhChhHHHhhc--CCCCHHHHHHHhc-cCCCCCCCcHHHHHHHHhcCcceeecccC----C-C---cceecCccccccc
Q 016366 45 IQLGVFEIIAKA--GELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSG----G-E---RLYALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~eLa~~~~-~~~~~~~~~l~r~L~~L~~~gll~~~~~~----~-~---~~y~~t~~s~~l~ 113 (390)
.+..|++.|..+ +..|+++|++.++ + ....+.+.|+.|+..|+|...... . + ..|.+|+.+....
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 566677777654 3589999999999 8 999999999999999999853110 1 1 1589998887555
Q ss_pred cC
Q 016366 114 SN 115 (390)
Q Consensus 114 ~~ 115 (390)
..
T Consensus 106 ~~ 107 (151)
T 3u1d_A 106 RA 107 (151)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 450
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=87.29 E-value=2.2 Score=38.54 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=49.2
Q ss_pred CcceEEEEcCCccHHHHHHHhhCCC----CeEEEecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhH
Q 016366 227 NVERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDH 302 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~p~----~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~ 302 (390)
++..|+-||||.|.....+.+.+|+ ++++++|-..-.......+ ++.+.... + ++.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l~~~~----------------NV~li~~f---v-de~ 119 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLR----------------DVTLVTRF---V-DEE 119 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCT----------------TEEEEECC---C-CHH
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhhcCCC----------------cEEEEecc---C-CHH
Confidence 4569999999999999999887775 6888888210000001111 44443332 2 232
Q ss_pred HHHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 303 CLRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 303 ~~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
-+++.++.+....+++|.|.-...
T Consensus 120 ---dl~~l~~~~~~~~iLLISDIRS~r 143 (307)
T 3mag_A 120 ---YLRSIKKQLHPSKIILISDVRSKR 143 (307)
T ss_dssp ---HHHHHHHHHTTSCEEEEECCCC--
T ss_pred ---HHHHHHHhccCCCEEEEEEecCCC
Confidence 256666677778899998876543
No 451
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=87.26 E-value=0.29 Score=43.65 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=50.1
Q ss_pred HHhChhHHHhhc--CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcc---eecCccccccc
Q 016366 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (390)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~---y~~t~~s~~l~ 113 (390)
-+..++..|.++ +++|..|||+++++ ++..+.++++-|...|+|.+..+..+.+ ..+|+.+..+.
T Consensus 35 ~q~~vL~~L~~~~~~~~~~~el~~~l~~----~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 35 KEFILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 345566777653 47999999999999 9999999999999999998865544443 55677766544
No 452
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=87.21 E-value=0.66 Score=41.40 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC
Q 016366 213 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS 268 (390)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~ 268 (390)
.++..+++.+. ..+..|||..||+|.++.+..+. +.+++++|+ +..++.+++
T Consensus 200 ~l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~ 252 (260)
T 1g60_A 200 DLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANF 252 (260)
T ss_dssp HHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 34455665543 45679999999999999998876 467888888 767766553
No 453
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=86.91 E-value=0.48 Score=37.59 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=42.1
Q ss_pred HHHHHhChhHHHhhc-CCCCHHHHHHHh-----ccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 42 QAAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 42 ~~a~~lglfd~L~~~-g~~t~~eLa~~~-----~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+..+.-|++.|... ++.|++||.+++ ++ +..-+-|.|+.|+..|+|.+-
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEE
Confidence 355677788888754 489999999999 66 888999999999999999864
No 454
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=86.91 E-value=0.36 Score=36.39 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=39.2
Q ss_pred HHHHHHHhChhH-HHhhcCCC-CHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 40 ATQAAIQLGVFE-IIAKAGEL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 40 ~l~~a~~lglfd-~L~~~g~~-t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.++..++..|.+ .+..+..+ |..+||+.+|+ ....+++-|+.|...|+|..
T Consensus 15 ~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~ 67 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAPGDTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSS 67 (102)
T ss_dssp HHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEE
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 344455555555 33432255 99999999999 99999999999999999986
No 455
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=86.48 E-value=1.8 Score=40.30 Aligned_cols=122 Identities=11% Similarity=0.032 Sum_probs=72.3
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCC-eEEEecc-hHHHhhCCC-CCCceEEECCCCCC----CC--CCcEEEeccccccC
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPS-YAGVEHVGGNMFES----VP--EGDAILMKWILHCW 298 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~~----~p--~~D~i~~~~vlh~~ 298 (390)
..+++|+-||.|.++..+.++.-+. .+..+|+ +.+++..+. .+...++.+|+.+- ++ ..|+++...-...|
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 3589999999999999999875322 3566676 666666554 35567888998762 22 24999988776666
Q ss_pred ChhH--------HHHHHHHH---HHhCC--CCcEEEEEecccCCCCCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHH
Q 016366 299 DDDH--------CLRILKNC---YKAVP--GNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 365 (390)
Q Consensus 299 ~d~~--------~~~~L~~~---~~~L~--pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~l 365 (390)
+..- .-.++.++ .+.++ | .+++.|.+..- . .+ .+.+.+.+.
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P--~~~~~ENV~~l-------------~---------~~--~~~~~i~~~ 135 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKGF-------------E---------VS--STRDLLIQT 135 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCC--SEEEEEEETTG-------------G---------GS--HHHHHHHHH
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHhcCCC--CEEEEeCCccc-------------c---------CH--HHHHHHHHH
Confidence 5221 11233333 33444 4 35666766311 0 01 135677888
Q ss_pred HHHCCCCeeE
Q 016366 366 AIAAGFKGIN 375 (390)
Q Consensus 366 l~~aGf~~~~ 375 (390)
|++.||.+..
T Consensus 136 l~~~GY~v~~ 145 (343)
T 1g55_A 136 IENCGFQYQE 145 (343)
T ss_dssp HHHTTEEEEE
T ss_pred HHHCCCeeEE
Confidence 8999998754
No 456
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=85.81 E-value=0.5 Score=43.77 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=45.6
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
+..|++.|.+++++|.++||+++++ .+..+.|-|+.|...|++.+. ..+..|++.+.
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~--~~g~GY~l~~~ 63 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFT--VPGKGYSLPEP 63 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEE--ETTTEEECSSC
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEE--ecCCCcEEeec
Confidence 3456777876568999999999999 999999999999999998653 23446877653
No 457
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=85.30 E-value=0.88 Score=46.61 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=55.3
Q ss_pred CcceEEEEcCCccHHHHHHHhhC-------CC-----CeEEEecc----hHHHhhCCC---------------C------
Q 016366 227 NVERLVDVGGGFGVTLSMITSKY-------PQ-----IKAVNFDL----PHVVQDAPS---------------Y------ 269 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~-------p~-----~~~~~~Dl----~~~~~~a~~---------------~------ 269 (390)
+.-+|+|+|-|+|.......+.+ |+ ++++.++. ++.+..+-. .
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 44699999999998776665542 22 55777774 333331111 0
Q ss_pred --------C--CceEEECCCCCC---CC---C--CcEEEeccccc-cCChhHHHHHHHHHHHhCCCCcEEE
Q 016366 270 --------A--GVEHVGGNMFES---VP---E--GDAILMKWILH-CWDDDHCLRILKNCYKAVPGNGKVI 321 (390)
Q Consensus 270 --------~--rv~~~~gd~~~~---~p---~--~D~i~~~~vlh-~~~d~~~~~~L~~~~~~L~pgG~ll 321 (390)
+ ++++..||+.+- ++ . .|++++.-.-- --|+-.-..+++.+++.++|||.+.
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 216 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA 216 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 1 244566777552 21 1 28887643211 1122224478999999999998765
No 458
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=84.93 E-value=0.93 Score=36.58 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=40.7
Q ss_pred HHHHhChhHHHhhc-CCCCHHHHHHHh-----ccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 43 AAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 43 ~a~~lglfd~L~~~-g~~t~~eLa~~~-----~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..+.-|++.|... ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEE
Confidence 34556688888753 489999999999 56 788899999999999999864
No 459
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=84.82 E-value=0.57 Score=44.34 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+++++..-+..|++.|. +|++|..|||+++|+ .+..+.++++.|...|++.+.
T Consensus 13 ~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 13 MPKSVRAENISRILKRIM-KSPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp ---------CCCSHHHHH-HSCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred CchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 456677777888999999 789999999999999 999999999999999999874
No 460
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=84.67 E-value=0.58 Score=33.11 Aligned_cols=42 Identities=10% Similarity=0.089 Sum_probs=35.1
Q ss_pred hHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 50 FEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 50 fd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
++.|..++..|+.+||.++|+ ...-+.|.|.-|...|.|...
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCCCcchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecC
Confidence 335555335999999999999 888999999999999999753
No 461
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=84.63 E-value=0.19 Score=47.20 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=0.0
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccccC
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN 115 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~ 115 (390)
+..++..|..++++|..|||+++++ ++..++|.|+.|...|+|.+ ......+|+.+..+...
T Consensus 22 ~~~iL~~l~~~~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~----~~~gi~LT~~G~~~~~~ 83 (345)
T 2o0m_A 22 RFQILRNIYWMQPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEP----SKSGMTLTERGLEVYQG 83 (345)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE----EecceEEcHHHHHHHHH
Confidence 4567777777679999999999999 99999999999999999974 22346688877766643
No 462
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=84.26 E-value=0.43 Score=41.84 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=39.7
Q ss_pred CHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 60 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 60 t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+..+||+++++ ++..+.+.++.|...|+|.+. .+..+.+|+.+..+.
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA---GDRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe---CCccEEECHHHHHHH
Confidence 44999999999 999999999999999999973 345688888776554
No 463
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=84.15 E-value=0.54 Score=48.34 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=69.2
Q ss_pred CcceEEEEcCCccHHHHHHHhhC-------CC-----CeEEEecc----hHHHhhCCC----------------------
Q 016366 227 NVERLVDVGGGFGVTLSMITSKY-------PQ-----IKAVNFDL----PHVVQDAPS---------------------- 268 (390)
Q Consensus 227 ~~~~iLDiG~G~G~~~~~l~~~~-------p~-----~~~~~~Dl----~~~~~~a~~---------------------- 268 (390)
+.-+|+|+|.|+|.......+.+ |+ ++++.++. .+.+..+-.
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45699999999998777766542 32 56777774 222222100
Q ss_pred -------CC--CceEEECCCCCC---CC---CC--cEEEecccc-ccCChhHHHHHHHHHHHhCCCCcEEEEEecccCCC
Q 016366 269 -------YA--GVEHVGGNMFES---VP---EG--DAILMKWIL-HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 330 (390)
Q Consensus 269 -------~~--rv~~~~gd~~~~---~p---~~--D~i~~~~vl-h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 330 (390)
.+ .++++.||+.+- ++ .+ |++++...- ..-|+-.-..+++.+.+.++|||.+.- ..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t--~~---- 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST--FT---- 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE--SC----
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe--cc----
Confidence 01 355677887652 22 12 887764311 111222234788888888888887542 10
Q ss_pred CCcchHHhhhhhhhhhhhhhcCCCcccCHHHHHHHHHHCCCCeeEEE
Q 016366 331 PEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 377 (390)
Q Consensus 331 ~~~~~~~~~~~~~d~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 377 (390)
.....++.|.++||.+.++.
T Consensus 212 ---------------------------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 ---------------------------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp ---------------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred ---------------------------CcHHHHHHHHhCCeEEEecc
Confidence 01345778889999877654
No 464
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=84.11 E-value=0.58 Score=41.16 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=42.5
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecC
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t 106 (390)
+.-|.-.|.. |+.|.++||+.+|+ ++.-+...|.-|...|+|.+ ..+++....
T Consensus 167 ~~~l~~~l~~-~~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~---~~~~~~~~~ 219 (232)
T 2qlz_A 167 LAILHYLLLN-GRATVEELSDRLNL----KEREVREKISEMARFVPVKI---INDNTVVLD 219 (232)
T ss_dssp HHHHHHHHHS-SEEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEE---ETTTEEEEC
T ss_pred HHHHHHHHhc-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEE---ecCCeEEec
Confidence 3445556665 69999999999999 99999999999999999975 345555443
No 465
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=83.66 E-value=0.68 Score=30.61 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=38.9
Q ss_pred HhChhHHHhhcC-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 46 ~lglfd~L~~~g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
+-.|++.+..+| -+.++.++++.|+ +..-+-..|+-|.+.|++..
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 345678887764 6999999999999 99999999999999999874
No 466
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=83.41 E-value=4.1 Score=33.19 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=61.8
Q ss_pred HHHHHHhhccCCcceEEEEcCCccHHHHHHHhhCCCCeEEEecch-----HHHhhCCCCCCceEEECCCCCCCCC-----
Q 016366 216 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-----HVVQDAPSYAGVEHVGGNMFESVPE----- 285 (390)
Q Consensus 216 ~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl~-----~~~~~a~~~~rv~~~~gd~~~~~p~----- 285 (390)
.+.+..+. .-.+-|||+|=|+|..=.++.+.+|+.++.++|.. +... +.=.++.||+.+-+|.
T Consensus 31 ~~a~~~v~--~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P-----~~e~~ilGdi~~tL~~~~~r~ 103 (174)
T 3iht_A 31 EHAIAQTA--GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTP-----PEAQLILGDIRETLPATLERF 103 (174)
T ss_dssp HHHHHHTT--TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCC-----CGGGEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCC-----chHheecccHHHHHHHHHHhc
Confidence 34444443 34567999999999999999999999999999941 1111 2345777777653221
Q ss_pred C-cEEEeccccccCChhH----HHHHHHHHHHhCCCCcEEEEEecc
Q 016366 286 G-DAILMKWILHCWDDDH----CLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 286 ~-D~i~~~~vlh~~~d~~----~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
+ .+.+...=+.....++ +..+=.-+..+|.|||.++-..+.
T Consensus 104 g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 104 GATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp CSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 2 3333222222222222 222333455678889977654444
No 467
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=83.33 E-value=1.3 Score=34.39 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=52.0
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHh------ccCCCCCCCcHHHHHHHHhcCcceeecccC-----CCcceecCc
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNP 107 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~------~~~~~~~~~~l~r~L~~L~~~gll~~~~~~-----~~~~y~~t~ 107 (390)
.++.-.+++-|+..|.. +|.+.-+|++.+ ++ .+..+...|+-|...|+|...... ....|++|+
T Consensus 6 ~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~ 80 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISR-RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNE 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHH-SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECH
T ss_pred HHHHChHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECH
Confidence 34455556666777776 599999999998 67 889999999999999999864211 112488898
Q ss_pred cccccc
Q 016366 108 VSKYFV 113 (390)
Q Consensus 108 ~s~~l~ 113 (390)
.+....
T Consensus 81 ~G~~~l 86 (117)
T 4esf_A 81 AGRQEL 86 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887555
No 468
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=83.29 E-value=0.61 Score=39.44 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=45.1
Q ss_pred HHHhChhHHHhhc-CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcc-eeecccCCCcceecCcc
Q 016366 44 AIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSGGERLYALNPV 108 (390)
Q Consensus 44 a~~lglfd~L~~~-g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gl-l~~~~~~~~~~y~~t~~ 108 (390)
--...|.+.|..+ +++|..|||+++|+ ..+.+.|-++.|...|+ +.. ..+.|.+.+.
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~----~~~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA----TPRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE----ETTEEECCTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----ECCEEEECCc
Confidence 3456678888754 47999999999999 99999999999999999 653 2356766653
No 469
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=83.22 E-value=0.45 Score=36.04 Aligned_cols=43 Identities=28% Similarity=0.328 Sum_probs=34.8
Q ss_pred ChhHHHhhcCCC-CHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceee
Q 016366 48 GVFEIIAKAGEL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (390)
Q Consensus 48 glfd~L~~~g~~-t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~ 94 (390)
.|...|..++.+ |..+||+.+|+ ...-+++-|+.|...|+|..
T Consensus 32 ~I~~~l~~g~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~ 75 (102)
T 2b0l_A 32 HIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIES 75 (102)
T ss_dssp HHTTSSBTTEEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhhhcCCCcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 334444432245 99999999999 99999999999999999986
No 470
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=82.58 E-value=0.92 Score=43.28 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=42.4
Q ss_pred HHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 44 a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.-+..|++.|..+|++|..|||+++|+ .+..+.++++.|...|++.+.
T Consensus 16 ~n~~~il~~l~~~~~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 16 TNAGAVYRLIDQLGPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHSSCSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEee
Confidence 334457888888889999999999999 999999999999999999874
No 471
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=82.50 E-value=2.2 Score=32.07 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=35.1
Q ss_pred HHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhc
Q 016366 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVS 88 (390)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~ 88 (390)
..+.++||+..|.. |..|..|||+.+|+ ....+.|+-++|..
T Consensus 43 ~l~~R~~l~~~L~~-ge~TQREIA~~lGi----S~stISRi~r~L~~ 84 (101)
T 1jhg_A 43 ALGTRVRIIEELLR-GEMSQRELKNELGA----GIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHHH-CCSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence 45667999999987 57999999999999 88888888776643
No 472
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=81.87 E-value=0.62 Score=35.52 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=48.4
Q ss_pred HHHHhChhHHHhhcCCCCHHHHHHHh----ccCCCCCCCcHHHHHHHHhcCcceeecccCCCc----ceecCccccccc
Q 016366 43 AAIQLGVFEIIAKAGELSAPEIAAQL----QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER----LYALNPVSKYFV 113 (390)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~eLa~~~----~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~----~y~~t~~s~~l~ 113 (390)
-..++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+.|...|+|.......++ .|++|+.+....
T Consensus 8 g~l~~~IL~~L~~-~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 8 LLIEYLILAIVSK-HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHHHHHHH-SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 3455566777776 588888888775 78 899999999999999999864221122 388888877554
No 473
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=81.86 E-value=1.3 Score=29.76 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=28.5
Q ss_pred hHHHhhcCCCCHHHHHHHh-----ccCCCCCCCcHHHHHHHHhcCcce
Q 016366 50 FEIIAKAGELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVL 92 (390)
Q Consensus 50 fd~L~~~g~~t~~eLa~~~-----~~~~~~~~~~l~r~L~~L~~~gll 92 (390)
...+..++++|++||++.+ ++ ...-+.|.|+ ..|++
T Consensus 11 ~~ll~~~~~~t~~el~~~l~~~~~~v----s~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 11 REIITSNEIETQDELVDMLKQDGYKV----TQATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHTTCCC----CHHHHHHHHH---HHTCE
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCCc----CHHHHHHHHH---HcCCE
Confidence 3445555699999999999 88 8888888888 55777
No 474
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=81.79 E-value=1.3 Score=42.72 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=43.0
Q ss_pred HHHHHhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..-+..|++.|..+|++|..|||+++|+ .+..+.++++.|...|++.+.
T Consensus 37 r~~n~~~il~~l~~~~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 37 KQINAGRVYKLIDQKGPISRIDLSKESEL----APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 33444557888887789999999999999 999999999999999999874
No 475
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=81.76 E-value=0.4 Score=38.38 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=38.3
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCC-----cceecCcccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE-----RLYALNPVSK 110 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~-----~~y~~t~~s~ 110 (390)
..|.++||+++|+ ++.-+.++|+-|...|++......+. ..|.++|.-.
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~e 104 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWG 104 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHH
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHH
Confidence 6899999999999 99999999999999999987321111 3466666443
No 476
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=81.54 E-value=1.2 Score=36.05 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=41.7
Q ss_pred HHHHhChhHHHhhc-CCCCHHHHHHHh-----ccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 43 AAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 43 ~a~~lglfd~L~~~-g~~t~~eLa~~~-----~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
+..+.-|++.|... ++.|++||.+.+ ++ +..-+-|.|+.|+..|+|.+.
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEE
Confidence 56677788888764 489999999998 56 888999999999999999864
No 477
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=81.51 E-value=4.8 Score=37.93 Aligned_cols=96 Identities=9% Similarity=0.059 Sum_probs=62.3
Q ss_pred ceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCC-CCCceEEECCCCCC----C-----C--CCcEEEecccc
Q 016366 229 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFES----V-----P--EGDAILMKWIL 295 (390)
Q Consensus 229 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~rv~~~~gd~~~~----~-----p--~~D~i~~~~vl 295 (390)
.+++|+-||.|.++..+.++.-+ .+..+|+ +..++..+. .+...++++|+.+- + + ..|+|+..--.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~-~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPC 81 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFD-VKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPC 81 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCE-EEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCCc-EEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCC
Confidence 47999999999999999887522 2346676 556555543 46788889998762 2 1 23999988877
Q ss_pred ccCCh-------hHHHHHHH---HHHHhCCCCcEEEEEeccc
Q 016366 296 HCWDD-------DHCLRILK---NCYKAVPGNGKVIVMNSIV 327 (390)
Q Consensus 296 h~~~d-------~~~~~~L~---~~~~~L~pgG~lli~e~~~ 327 (390)
..|+. +..-.++. ++.+.++| ++++.|.+.
T Consensus 82 Q~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~ 121 (376)
T 3g7u_A 82 QGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVP 121 (376)
T ss_dssp CTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECT
T ss_pred CCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecch
Confidence 77651 11122332 34445566 467778774
No 478
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=81.47 E-value=2.4 Score=38.21 Aligned_cols=98 Identities=10% Similarity=-0.058 Sum_probs=67.7
Q ss_pred cceEEEEcCCccHHHHHHHhhCCCCeEEEecc-hHHHhhCCCC----CCceEEECCCCCC----CCC---CcEEEecccc
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFES----VPE---GDAILMKWIL 295 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~----~rv~~~~gd~~~~----~p~---~D~i~~~~vl 295 (390)
...+||+=+|+|.++.+++++. -+++.+|+ +..++..+++ ++++++..|.++- .|. .|+|++.=-+
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 4668999999999999999943 67888887 6666655543 6799999997541 232 3998877655
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCcEEEEEecccCC
Q 016366 296 HCWDDDHCLRILKNCYK--AVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 296 h~~~d~~~~~~L~~~~~--~L~pgG~lli~e~~~~~ 329 (390)
..- .+..++++.+.+ .+.|+|.++|-=++.+.
T Consensus 170 e~k--~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~ 203 (283)
T 2oo3_A 170 ERK--EEYKEIPYAIKNAYSKFSTGLYCVWYPVVNK 203 (283)
T ss_dssp CST--THHHHHHHHHHHHHHHCTTSEEEEEEEESSH
T ss_pred CCC--cHHHHHHHHHHHhCccCCCeEEEEEEeccch
Confidence 421 234466666655 34588988887666543
No 479
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.46 E-value=0.73 Score=34.35 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=40.3
Q ss_pred HHhChhHHHhhcC--CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
.+.-|+..+.+.| +++..+|+.++++ +...+.++|+.|++.|++...
T Consensus 38 ~E~lVy~~I~~aGn~GIw~kdL~~~tnL----~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 38 QEKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCEEEe
Confidence 4555677777644 7999999999999 999999999999999999863
No 480
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=81.30 E-value=1 Score=34.98 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=54.0
Q ss_pred HHHHHHHHHhChhHHHhhcCCCCHHHHHHHhc------cCCCCCCCcHHHHHHHHhcCcceeecccC-CC----cceecC
Q 016366 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ------AQNVKAPMMLDRMLRLLVSHRVLECSVSG-GE----RLYALN 106 (390)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~~------~~~~~~~~~l~r~L~~L~~~gll~~~~~~-~~----~~y~~t 106 (390)
.+++.-..++-|+..|.. +|.+.-+|++.+. + .+..+.+.|+.|...|+|...... .+ ..|++|
T Consensus 8 ~~l~~g~l~~~IL~lL~~-~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT 82 (117)
T 3elk_A 8 ERILHGLITLYILKELVK-RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHIT 82 (117)
T ss_dssp CHHHHHHHHHHHHHHHHH-SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEEC
T ss_pred HHHHhhHHHHHHHHHHHc-CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 345556667777888876 6999999999887 6 788999999999999999864210 11 248999
Q ss_pred cccccccc
Q 016366 107 PVSKYFVS 114 (390)
Q Consensus 107 ~~s~~l~~ 114 (390)
+.+.....
T Consensus 83 ~~G~~~l~ 90 (117)
T 3elk_A 83 DAGKKFLC 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98875553
No 481
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=81.28 E-value=1.9 Score=28.51 Aligned_cols=44 Identities=25% Similarity=0.237 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
.++|+.|+|...++ +....+.-|+.|-+.|-+. +...+|++.|-
T Consensus 17 QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LR----KRsSRYrlkph 60 (68)
T 3i71_A 17 QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLR----KRSSRYRLKPH 60 (68)
T ss_dssp TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEE----EECCEEEECC-
T ss_pred ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhh----hhccccccCcc
Confidence 38999999999999 8888889999999999998 46789988763
No 482
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=81.06 E-value=1.1 Score=41.49 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=45.0
Q ss_pred HhChhHHHhhc-C-CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCcc
Q 016366 46 QLGVFEIIAKA-G-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (390)
Q Consensus 46 ~lglfd~L~~~-g-~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~ 108 (390)
+..|++.|.++ | ++|.++||+++|+ ....+.+.++.|...|+..++ ..+..|++.+.
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgv----Sr~aV~k~i~~L~~~G~~i~~--~~~~GY~L~~~ 63 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNI----SRTAVKKVIDQLKLEGCKIDS--VNHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE--ETTTEEEEEEC
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCC----CHHHHHHHHHHHHhcCCeEEE--eCCCeEEEecC
Confidence 34577777432 3 8999999999999 999999999999999996653 24567888764
No 483
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=81.02 E-value=1.2 Score=38.73 Aligned_cols=49 Identities=10% Similarity=0.204 Sum_probs=41.0
Q ss_pred CCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 58 ~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
+.+..+||+++++ ++..+.+.++.|...|+|.+ .....+++|+.+..+.
T Consensus 24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r---~~~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVV---ASDRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---CTTSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE---eCCCCeEECHHHHHHH
Confidence 3456999999999 99999999999999999987 3445688998887555
No 484
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=80.32 E-value=1.8 Score=33.34 Aligned_cols=70 Identities=11% Similarity=0.196 Sum_probs=52.1
Q ss_pred HHHHHHHHhChhHHHhhcCCCCHHHHHHHh--------ccCCCCCCCcHHHHHHHHhcCcceeecccC-CC----cceec
Q 016366 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GE----RLYAL 105 (390)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~eLa~~~--------~~~~~~~~~~l~r~L~~L~~~gll~~~~~~-~~----~~y~~ 105 (390)
.++.-..++-|+..|.+ +|.+.-+|.+.+ ++ ++..+.+.|+.|...|+|...... .+ ..|++
T Consensus 7 ~~~~g~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~L 81 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRL 81 (116)
T ss_dssp HHHHHHHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEE
T ss_pred HHHhchHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEE
Confidence 45555566677778876 699999999887 56 889999999999999999864211 11 24889
Q ss_pred Cccccccc
Q 016366 106 NPVSKYFV 113 (390)
Q Consensus 106 t~~s~~l~ 113 (390)
|+.+....
T Consensus 82 T~~G~~~l 89 (116)
T 3f8b_A 82 TEIGHENM 89 (116)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 98887555
No 485
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=80.15 E-value=4.5 Score=38.31 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=37.2
Q ss_pred CchHHHHHHHHHhhccHHHHHHHHHHhhccCCcceEEEEcCCccHHHHHHHhhC-------CCCeEEEecchH
Q 016366 196 NPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------PQIKAVNFDLPH 261 (390)
Q Consensus 196 ~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-------p~~~~~~~Dl~~ 261 (390)
.|+....|.+....+-. . ...... .+..-+|+|+|+|.|.++..+++.. ..+++..++...
T Consensus 54 apeis~~FGe~la~~~~---~-~w~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp 121 (387)
T 1zkd_A 54 SPEISQMFGELLGLWSA---S-VWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP 121 (387)
T ss_dssp HHHHCHHHHHHHHHHHH---H-HHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred CCchHHHHHHHHHHHHH---H-HHHHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence 35555566655433221 1 112222 3345689999999999998887642 345788888733
No 486
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=80.03 E-value=8.7 Score=34.30 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=52.9
Q ss_pred ceEEEEcCCc-c-HHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHHHH
Q 016366 229 ERLVDVGGGF-G-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLR 305 (390)
Q Consensus 229 ~~iLDiG~G~-G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~ 305 (390)
.+|.=||+|. | .++..+.+..+..+++++|. ++.++.+++...+.....|..+.+...|+|++.- ++.....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHHH
Confidence 4788899885 3 45555666555667888887 5555544332222122334332233449887654 4455568
Q ss_pred HHHHHHHh-CCCCcEEE
Q 016366 306 ILKNCYKA-VPGNGKVI 321 (390)
Q Consensus 306 ~L~~~~~~-L~pgG~ll 321 (390)
+++.+... ++|+..++
T Consensus 82 v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 82 FIKILADLDLKEDVIIT 98 (290)
T ss_dssp HHHHHHTSCCCTTCEEE
T ss_pred HHHHHHhcCCCCCCEEE
Confidence 88888888 88876544
No 487
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=79.80 E-value=1.1 Score=35.89 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=39.3
Q ss_pred hChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 47 lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
-.|.+.|. .|+.|..+||+++|+ ......-.|..|.-.|+|.+.
T Consensus 14 ~~ILE~Lk-~G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~V 57 (165)
T 2vxz_A 14 RDILALLA-DGCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRV 57 (165)
T ss_dssp HHHHHHHT-TCCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHH-hCCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEE
Confidence 45778888 589999999999999 888999999999999999864
No 488
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=79.73 E-value=1.8 Score=37.59 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=34.0
Q ss_pred cCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecc
Q 016366 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (390)
Q Consensus 56 ~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~ 96 (390)
.|++|+.+||+++|+ ........|+.+...|++.++.
T Consensus 166 ~g~vt~~~la~~l~w----s~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 166 KGSLTSEEFAKLVGM----SVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCEEEEC
Confidence 479999999999999 9999999999999999998753
No 489
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=79.45 E-value=0.76 Score=35.85 Aligned_cols=54 Identities=9% Similarity=0.026 Sum_probs=41.7
Q ss_pred HhChhHHHhhcCCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCc
Q 016366 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (390)
Q Consensus 46 ~lglfd~L~~~g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~ 107 (390)
...|.+.+.+ .|.++.++|+.+++ ++..+..+|+.|+..|.+.. ..++.|..+.
T Consensus 9 ~~~i~~~~~~-~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~---i~~~~~~~~~ 62 (121)
T 2pjp_A 9 WQKAEPLFGD-EPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITA---IVKDRYYRND 62 (121)
T ss_dssp HHHHGGGCSS-SCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEE---EETTEEEEHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEE---ecCCceECHH
Confidence 3445555544 37899999999999 99999999999999998875 3556665444
No 490
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=78.06 E-value=0.95 Score=36.60 Aligned_cols=68 Identities=10% Similarity=0.178 Sum_probs=50.0
Q ss_pred HHHHHHhChhHHHhhcCCCCHHHHHHHh--------ccCCCCCCCcHHHHHHHHhcCcceeecccC--C---CcceecCc
Q 016366 41 TQAAIQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG--G---ERLYALNP 107 (390)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~eLa~~~--------~~~~~~~~~~l~r~L~~L~~~gll~~~~~~--~---~~~y~~t~ 107 (390)
+....++-|+..|.. +|.+.-+|++.+ ++ .+..|.+.|+-|...|+|...... . .-.|++|+
T Consensus 38 ~~g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~ 112 (145)
T 1xma_A 38 IRGYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITP 112 (145)
T ss_dssp GGGTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECH
T ss_pred hcCcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECH
Confidence 344456666777766 589999998888 47 899999999999999999764221 1 12488888
Q ss_pred cccccc
Q 016366 108 VSKYFV 113 (390)
Q Consensus 108 ~s~~l~ 113 (390)
.+..+.
T Consensus 113 ~G~~~l 118 (145)
T 1xma_A 113 EGIKYY 118 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877554
No 491
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=78.04 E-value=1.3 Score=35.47 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=45.6
Q ss_pred HHHHHhChhHHHhhc-CCCCHHHHHHHhccC-CCCCCCcHHHHHHHHhcCcceeecccC-CCcceecC
Q 016366 42 QAAIQLGVFEIIAKA-GELSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECSVSG-GERLYALN 106 (390)
Q Consensus 42 ~~a~~lglfd~L~~~-g~~t~~eLa~~~~~~-~~~~~~~l~r~L~~L~~~gll~~~~~~-~~~~y~~t 106 (390)
.+..+.-|++.|... +++|++||.+.+.-. +..+..-+-|.|+.|+..|+|.+.... +..+|...
T Consensus 12 ~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~ 79 (139)
T 3mwm_A 12 ATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred cCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence 345677788888764 489999999998410 011778899999999999999764221 12356554
No 492
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=77.65 E-value=2.1 Score=40.96 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=32.3
Q ss_pred CCcceEEEEcCCccHHHHHHH-hhCCC-CeEEEecc-hHHHhhC
Q 016366 226 QNVERLVDVGGGFGVTLSMIT-SKYPQ-IKAVNFDL-PHVVQDA 266 (390)
Q Consensus 226 ~~~~~iLDiG~G~G~~~~~l~-~~~p~-~~~~~~Dl-~~~~~~a 266 (390)
++...++|||++.|.++..++ +..++ .+++.++- |...+..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L 268 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTL 268 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 567899999999999999988 56665 78999985 5554443
No 493
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=77.63 E-value=1.3 Score=35.14 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=39.8
Q ss_pred HHHhChhHHHhhc--CCCCHHHHHHHh-----ccCCCCCCCcHHHHHHHHhcCcceeec
Q 016366 44 AIQLGVFEIIAKA--GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (390)
Q Consensus 44 a~~lglfd~L~~~--g~~t~~eLa~~~-----~~~~~~~~~~l~r~L~~L~~~gll~~~ 95 (390)
-.+.-|++.|... ++.|++||.+.+ ++ +..-+-|.|+.|+..|+|.+.
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 72 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRH 72 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 4456678888753 489999999999 56 788899999999999999864
No 494
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=76.64 E-value=1.4 Score=37.63 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHhccCCCCCCCcHHHHHHHHhcCcceeecccCCCcceecCccccccc
Q 016366 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (390)
Q Consensus 57 g~~t~~eLa~~~~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 113 (390)
++++..+||+++++ .++.++..++-|...|++... . +...+|+.+..+.
T Consensus 29 ~~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~---~-~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK---Q-RGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC------CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---C-CCeEECHHHHHHH
Confidence 48999999999999 999999999999999999863 3 6778998877544
No 495
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=76.22 E-value=12 Score=33.13 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=50.8
Q ss_pred eEEEEcCCc-cH-HHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCCCCC-CCcEEEeccccccCChhHHHH
Q 016366 230 RLVDVGGGF-GV-TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP-EGDAILMKWILHCWDDDHCLR 305 (390)
Q Consensus 230 ~iLDiG~G~-G~-~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~~~p-~~D~i~~~~vlh~~~d~~~~~ 305 (390)
+|.=||+|. |. ++..+.+.....+++++|. ++.++.+++..-......|..+.+. ..|+|++. .+......
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 77 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFRE 77 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEc-----CCHHHHHH
Confidence 677889884 33 3444444332336888887 5555554433211112233322334 45888765 35556668
Q ss_pred HHHHHHHhCCCCcEEEE
Q 016366 306 ILKNCYKAVPGNGKVIV 322 (390)
Q Consensus 306 ~L~~~~~~L~pgG~lli 322 (390)
++..+...++|+..++.
T Consensus 78 v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 78 IAKKLSYILSEDATVTD 94 (281)
T ss_dssp HHHHHHHHSCTTCEEEE
T ss_pred HHHHHHhhCCCCcEEEE
Confidence 88999889999875443
No 496
>1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1vp3_A*
Probab=76.15 E-value=9.7 Score=34.75 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=50.3
Q ss_pred cceEEEEcCCccHHHHHHHhhCCC----CeEEEecchHHHhhCCCCCCceEEECCCCCCCCCCcEEEeccccccCChhHH
Q 016366 228 VERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHC 303 (390)
Q Consensus 228 ~~~iLDiG~G~G~~~~~l~~~~p~----~~~~~~Dl~~~~~~a~~~~rv~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~ 303 (390)
+..|+-+|++.|.....|.+.||+ ++++.+|-.......+..++|+++.. .++++
T Consensus 76 g~~VVYaGsAPG~HI~fL~~lF~~l~~~lkwvLiDp~~f~~~Le~~~ni~li~~-------------------ffde~-- 134 (348)
T 1vpt_A 76 GATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTR-------------------FVDEE-- 134 (348)
T ss_dssp TCEEEEESCSSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCTTEEEEEC-------------------CCCHH--
T ss_pred CCeEEEeCcCCcchHHHHHHHhhhcCCceEEEEECCCchhhhhcCCCcEEeehh-------------------hcCHH--
Confidence 359999999999999888887775 79999994222222222233443331 12222
Q ss_pred HHHHHHHHHhCCCCcEEEEEecccCC
Q 016366 304 LRILKNCYKAVPGNGKVIVMNSIVPE 329 (390)
Q Consensus 304 ~~~L~~~~~~L~pgG~lli~e~~~~~ 329 (390)
-++.+++.+.+...|+|+|.-..+
T Consensus 135 --~i~~l~~~~~~~~vLfISDIRS~~ 158 (348)
T 1vpt_A 135 --YLRSIKKQLHPSKIILISDVASAA 158 (348)
T ss_dssp --HHHHHHHHHTTSCEEEEECCCC--
T ss_pred --HHHHHHHHhcCCCEEEEEecccCC
Confidence 366666677777888888876533
No 497
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=76.10 E-value=1.7 Score=36.25 Aligned_cols=63 Identities=10% Similarity=0.290 Sum_probs=47.5
Q ss_pred HHhChhHHHhhcCCCCHHHHHHHh--------ccCCCCCCCcHHHHHHHHhcCcceeecccCC-----CcceecCccccc
Q 016366 45 IQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG-----ERLYALNPVSKY 111 (390)
Q Consensus 45 ~~lglfd~L~~~g~~t~~eLa~~~--------~~~~~~~~~~l~r~L~~L~~~gll~~~~~~~-----~~~y~~t~~s~~ 111 (390)
+++-|+..|.. +|.+.-+|++.+ ++ .+..+.+.|+-|...|+|....... ...|++|+.+..
T Consensus 3 l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~ 77 (179)
T 1yg2_A 3 LPHVILTVLST-RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRS 77 (179)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHH
T ss_pred hHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHH
Confidence 34557777876 699999999999 56 8889999999999999998642211 124999988764
Q ss_pred c
Q 016366 112 F 112 (390)
Q Consensus 112 l 112 (390)
.
T Consensus 78 ~ 78 (179)
T 1yg2_A 78 A 78 (179)
T ss_dssp H
T ss_pred H
Confidence 3
No 498
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=75.64 E-value=9.3 Score=35.99 Aligned_cols=99 Identities=11% Similarity=0.033 Sum_probs=61.7
Q ss_pred cCCcceEEEEcCCc-cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECCCCC-CC---------CC-C-cEEE
Q 016366 225 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SV---------PE-G-DAIL 290 (390)
Q Consensus 225 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd~~~-~~---------p~-~-D~i~ 290 (390)
+....+||-+|+|. |.++..+++.....+++++|. ++-++.+++..- ..+. ..+ ++ +. + |+|+
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-~~i~--~~~~~~~~~~~~~~~~g~g~Dvvi 259 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGF-ETID--LRNSAPLRDQIDQILGKPEVDCGV 259 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTC-EEEE--TTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-cEEc--CCCcchHHHHHHHHhCCCCCCEEE
Confidence 66788999999986 889999998764337888885 666676665432 3332 222 21 11 3 8876
Q ss_pred eccccccCC--h----hHHHHHHHHHHHhCCCCcEEEEEecc
Q 016366 291 MKWILHCWD--D----DHCLRILKNCYKAVPGNGKVIVMNSI 326 (390)
Q Consensus 291 ~~~vlh~~~--d----~~~~~~L~~~~~~L~pgG~lli~e~~ 326 (390)
-.---.... + ......+..+.+.|+|||+++++-..
T Consensus 260 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~ 301 (398)
T 2dph_A 260 DAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY 301 (398)
T ss_dssp ECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred ECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence 543221100 0 00013588889999999998876543
No 499
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=75.49 E-value=6.2 Score=36.60 Aligned_cols=93 Identities=10% Similarity=0.078 Sum_probs=58.1
Q ss_pred cCCcceEEEEcCCc-cHHHHHHHhhCCCCeEEEecc-hHHHhhCCCCCCceEEECC------CCCC----CCCC-cEEEe
Q 016366 225 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN------MFES----VPEG-DAILM 291 (390)
Q Consensus 225 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~rv~~~~gd------~~~~----~p~~-D~i~~ 291 (390)
.....+||-+|+|. |.++..+++.....+++++|. ++-.+.+++..--..+..+ +.+. .+.+ |+|+-
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid 248 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 248 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence 66778999999885 888888998764337888875 5555555543221222221 0000 0123 88764
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEec
Q 016366 292 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 325 (390)
Q Consensus 292 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 325 (390)
.-- .+ ..+..+.+.|+|||+++++-.
T Consensus 249 ~~g-----~~---~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 249 CTG-----AE---ASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CSC-----CH---HHHHHHHHHSCTTCEEEECSC
T ss_pred CCC-----Ch---HHHHHHHHHhcCCCEEEEEec
Confidence 321 11 457888899999999987654
No 500
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=75.40 E-value=2 Score=33.19 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=52.3
Q ss_pred HHHHHHHHHhChhHHHhhcCCCCHHHHHHHh------ccCCCCCCCcHHHHHHHHhcCcceeecccC-CC----cceecC
Q 016366 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GE----RLYALN 106 (390)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~eLa~~~------~~~~~~~~~~l~r~L~~L~~~gll~~~~~~-~~----~~y~~t 106 (390)
..++.-..++-|+..|.+ +|.+--+|++.+ ++ .+..+...|+-|...|+|...... .+ ..|++|
T Consensus 7 ~~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT 81 (116)
T 3hhh_A 7 TELLKGILEGLVLAIIQR-KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLT 81 (116)
T ss_dssp HHHHTTHHHHHHHHHHHH-SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEEC
T ss_pred HHHHhhhHHHHHHHHHhc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 345555566667777776 599999999998 57 889999999999999999764211 11 248889
Q ss_pred ccccccc
Q 016366 107 PVSKYFV 113 (390)
Q Consensus 107 ~~s~~l~ 113 (390)
+.+....
T Consensus 82 ~~G~~~l 88 (116)
T 3hhh_A 82 SSGEAEL 88 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877555
Done!