BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016367
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GZX|A Chain A, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
From Staphylococcus Aureus. Northeast Structural
Genomics Consortium Target Zr237.
pdb|2GZX|B Chain B, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
From Staphylococcus Aureus. Northeast Structural
Genomics Consortium Target Zr237
Length = 265
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 43/168 (25%)
Query: 25 KCVCRTWQALAQDPRLPIIYHARASTRDPCLIL---HYD-----------SP-----IQN 65
K V R ALA+ +LPII H R +T+D IL H + SP + N
Sbjct: 108 KEVFRKQIALAKRLKLPIIIHNREATQDCIDILLEEHAEEVGGIXHSFSGSPEIADIVTN 167
Query: 66 KLCF-VSINGDNPDQDGSRVRRIDARVNSIMAEYQVVGSCNGLLCVSDALYFNPIIVCNP 124
KL F +S+ G ++ + + + V S LL +DA Y +P +P
Sbjct: 168 KLNFYISLGGPVTFKNAKQPKEVAKHV-----------SXERLLVETDAPYLSP----HP 212
Query: 125 FTGSYLELAKATQHAQE-----ELAFGFGCNSSTMEYKVVRIVFNFNT 167
+ G E A+ T A++ L++ C +T K +FN N+
Sbjct: 213 YRGKRNEPARVTLVAEQIAELKGLSYEEVCEQTT---KNAEKLFNLNS 257
>pdb|3CE1|A Chain A, Crystal Structure Of The CuZN SUPEROXIDE DISMUTASE FROM
Cryptococcus Liquefaciens Strain N6
Length = 168
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 48 ASTRDPCLILHYDSPIQNKLCFVSINGDNPDQDGSRVRRIDARVNSIMAEYQVVGSCNGL 107
+ST +L DSP+Q + F + P ++ +DA +Q + NG
Sbjct: 2 SSTIKAIAVLKGDSPVQGVITFTQESSGGPVTVSGEIKNMDANAQRGFHVHQFGDNSNG- 60
Query: 108 LCVSDALYFNP 118
C S +FNP
Sbjct: 61 -CTSAGPHFNP 70
>pdb|2P01|A Chain A, The Structure Of Receptor-Associated Protein(Rap)
pdb|2P03|A Chain A, The Structure Of Receptor-Associated Protein(Rap)
Length = 323
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 57 LHYDSPIQ--NKLCFVSINGDNPDQDGSRVRRIDARVNSIMAEYQVVGSCNGLLCVSDAL 114
LH D IQ ++L + + D D+DG + R+ +N I+A+Y + G + S++L
Sbjct: 45 LHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQVTSNSL 104
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 4 LPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRL 40
LP ++AL +LS L L++ CR W+ LA+D L
Sbjct: 22 LPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 58
>pdb|1OP1|A Chain A, Solution Nmr Structure Of Domain 1 Of Receptor Associated
Protein
Length = 82
Score = 28.1 bits (61), Expect = 8.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 57 LHYDSPIQ--NKLCFVSINGDNPDQDGSRVRRIDARVNSIMAEYQVVG 102
LH D IQ ++L + + D D+DG + R+ +N I+A+Y + G
Sbjct: 29 LHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDG 76
>pdb|1LRE|A Chain A, Receptor Associated Protein (Rap) Domain 1, Nmr, 20
Structures
pdb|1NRE|A Chain A, Receptor Associated Protein (Rap) Domain 1, Nmr, Minimized
Average Structure
pdb|2FYL|A Chain A, Haddock Model Of The Complex Between Double Module Of Lrp,
Cr56, And First Domain Of Receptor Associated Protein,
Rap- D1
Length = 81
Score = 28.1 bits (61), Expect = 9.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 57 LHYDSPIQ--NKLCFVSINGDNPDQDGSRVRRIDARVNSIMAEYQVVG 102
LH D IQ ++L + + D D+DG + R+ +N I+A+Y + G
Sbjct: 29 LHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDG 76
>pdb|1OV2|A Chain A, Ensemble Of The Solution Structures Of Domain One Of
Receptor Associated Protein
Length = 99
Score = 27.7 bits (60), Expect = 10.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 57 LHYDSPIQ--NKLCFVSINGDNPDQDGSRVRRIDARVNSIMAEYQVVG 102
LH D IQ ++L + + D D+DG + R+ +N I+A+Y + G
Sbjct: 45 LHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDG 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,460,897
Number of Sequences: 62578
Number of extensions: 528488
Number of successful extensions: 973
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 12
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)