Query 016367
Match_columns 390
No_of_seqs 148 out of 1661
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 06:13:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 1.5E-35 3.2E-40 261.8 26.7 223 101-356 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 3.8E-16 8.2E-21 130.0 17.4 152 209-378 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 4.6E-15 1E-19 118.3 15.0 115 209-342 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.5 3.8E-11 8.3E-16 110.2 24.4 321 2-380 5-373 (373)
5 PHA02713 hypothetical protein; 99.2 4.4E-09 9.5E-14 104.4 20.7 216 100-361 298-540 (557)
6 KOG4441 Proteins containing BT 99.1 1E-08 2.3E-13 101.5 20.4 213 100-361 327-553 (571)
7 PHA03098 kelch-like protein; P 99.0 9.9E-08 2.1E-12 95.1 22.5 196 117-361 311-518 (534)
8 PF12937 F-box-like: F-box-lik 99.0 5.5E-10 1.2E-14 71.8 3.4 42 1-42 1-42 (47)
9 PHA02713 hypothetical protein; 98.9 1.1E-07 2.3E-12 94.6 20.8 198 117-361 272-496 (557)
10 KOG4441 Proteins containing BT 98.9 9.3E-08 2E-12 94.8 19.8 200 116-362 300-507 (571)
11 PHA02790 Kelch-like protein; P 98.9 2.2E-07 4.8E-12 90.9 21.3 185 117-361 287-477 (480)
12 PLN02153 epithiospecifier prot 98.8 4.3E-06 9.4E-11 78.3 25.1 208 117-362 50-292 (341)
13 PLN02193 nitrile-specifier pro 98.8 1.8E-06 4E-11 84.3 22.8 207 117-363 193-419 (470)
14 TIGR03548 mutarot_permut cycli 98.7 5.4E-06 1.2E-10 77.1 23.4 157 118-299 40-204 (323)
15 TIGR03547 muta_rot_YjhT mutatr 98.7 5.7E-06 1.2E-10 77.7 23.7 184 103-301 15-239 (346)
16 PF00646 F-box: F-box domain; 98.7 2.4E-09 5.1E-14 69.3 -0.0 43 2-44 4-46 (48)
17 smart00256 FBOX A Receptor for 98.7 9.5E-09 2.1E-13 64.0 2.6 39 4-42 1-39 (41)
18 PRK14131 N-acetylneuraminic ac 98.6 1.1E-05 2.5E-10 76.5 22.4 186 101-301 34-260 (376)
19 PLN02153 epithiospecifier prot 98.5 3.4E-05 7.4E-10 72.3 21.8 184 101-299 81-294 (341)
20 PHA02790 Kelch-like protein; P 98.5 1.1E-05 2.4E-10 79.1 17.8 140 100-273 313-454 (480)
21 PHA03098 kelch-like protein; P 98.4 2.2E-05 4.7E-10 78.3 18.3 195 118-362 265-472 (534)
22 PLN02193 nitrile-specifier pro 98.3 0.00024 5.2E-09 69.5 23.0 158 180-363 193-360 (470)
23 PRK14131 N-acetylneuraminic ac 98.3 0.00023 4.9E-09 67.7 22.2 93 180-273 189-287 (376)
24 TIGR03547 muta_rot_YjhT mutatr 98.1 0.00059 1.3E-08 64.1 21.1 92 180-273 168-265 (346)
25 TIGR03548 mutarot_permut cycli 98.0 0.0018 3.9E-08 60.2 21.5 137 117-273 88-231 (323)
26 KOG0281 Beta-TrCP (transducin 97.6 0.00048 1E-08 61.6 9.0 42 1-42 75-120 (499)
27 KOG1230 Protein containing rep 97.5 0.0052 1.1E-07 56.6 15.1 221 117-366 98-352 (521)
28 KOG4693 Uncharacterized conser 97.4 0.0036 7.8E-08 54.4 12.0 167 117-300 105-287 (392)
29 KOG4693 Uncharacterized conser 97.2 0.0066 1.4E-07 52.8 11.9 216 116-367 43-289 (392)
30 KOG2120 SCF ubiquitin ligase, 97.1 0.00029 6.3E-09 62.3 2.4 40 2-41 99-138 (419)
31 KOG0379 Kelch repeat-containin 96.6 0.38 8.2E-06 47.3 19.8 210 118-365 89-312 (482)
32 KOG2997 F-box protein FBX9 [Ge 96.5 0.0013 2.8E-08 58.5 1.5 45 1-45 107-156 (366)
33 KOG0379 Kelch repeat-containin 96.2 0.37 8E-06 47.4 17.5 156 181-362 89-257 (482)
34 PF02191 OLF: Olfactomedin-lik 95.9 0.65 1.4E-05 41.2 15.7 137 207-377 72-228 (250)
35 smart00284 OLF Olfactomedin-li 95.2 1.5 3.4E-05 38.7 15.3 73 207-286 77-160 (255)
36 PF13360 PQQ_2: PQQ-like domai 94.5 3 6.5E-05 36.3 16.4 192 104-360 35-236 (238)
37 PF07762 DUF1618: Protein of u 93.8 0.49 1.1E-05 37.4 8.3 70 232-301 7-98 (131)
38 KOG0274 Cdc4 and related F-box 93.7 2.9 6.3E-05 41.6 15.3 42 1-42 108-149 (537)
39 PF13964 Kelch_6: Kelch motif 93.7 0.16 3.5E-06 32.5 4.5 42 207-249 5-47 (50)
40 PF01344 Kelch_1: Kelch motif; 92.9 0.38 8.2E-06 30.1 5.3 42 207-249 5-47 (47)
41 PF07893 DUF1668: Protein of u 92.6 8.4 0.00018 36.1 15.9 155 100-273 71-251 (342)
42 PF13964 Kelch_6: Kelch motif 92.3 0.36 7.7E-06 30.8 4.6 22 116-137 27-48 (50)
43 KOG1230 Protein containing rep 90.3 4.2 9.2E-05 38.2 10.8 126 232-380 99-246 (521)
44 KOG4152 Host cell transcriptio 90.2 8.1 0.00018 37.4 12.8 172 117-307 57-257 (830)
45 smart00612 Kelch Kelch domain. 89.8 0.74 1.6E-05 28.4 4.2 34 179-214 14-47 (47)
46 PF13360 PQQ_2: PQQ-like domai 88.3 16 0.00035 31.6 14.1 139 181-361 4-147 (238)
47 KOG4341 F-box protein containi 87.9 0.3 6.4E-06 45.8 1.8 36 3-38 74-109 (483)
48 PF07646 Kelch_2: Kelch motif; 87.4 1.9 4.2E-05 27.2 4.9 42 207-248 5-47 (49)
49 PF08450 SGL: SMP-30/Gluconola 87.2 20 0.00043 31.5 24.0 208 101-364 7-223 (246)
50 KOG2055 WD40 repeat protein [G 85.6 13 0.00027 35.5 10.9 101 230-361 279-381 (514)
51 PF06433 Me-amine-dh_H: Methyl 85.5 17 0.00037 33.6 11.7 119 207-360 187-326 (342)
52 COG4257 Vgb Streptogramin lyas 84.5 17 0.00036 32.6 10.5 125 100-253 194-319 (353)
53 PF01344 Kelch_1: Kelch motif; 84.1 1.2 2.6E-05 27.7 2.8 20 116-135 27-46 (47)
54 COG3055 Uncharacterized protei 84.1 24 0.00052 32.7 11.8 117 180-301 113-267 (381)
55 TIGR01640 F_box_assoc_1 F-box 83.1 30 0.00065 30.0 13.1 118 211-364 3-137 (230)
56 smart00612 Kelch Kelch domain. 81.7 4.5 9.7E-05 24.7 4.7 23 116-138 14-36 (47)
57 PRK11138 outer membrane biogen 79.7 35 0.00076 32.5 12.3 114 208-360 64-184 (394)
58 PF13415 Kelch_3: Galactose ox 79.5 5 0.00011 25.3 4.4 23 116-138 18-40 (49)
59 KOG3545 Olfactomedin and relat 77.7 28 0.00061 30.6 9.6 87 192-286 57-154 (249)
60 PF07893 DUF1668: Protein of u 77.3 63 0.0014 30.2 13.6 111 232-361 87-214 (342)
61 PF13418 Kelch_4: Galactose ox 77.1 4.9 0.00011 25.2 3.8 38 208-246 6-44 (49)
62 TIGR03300 assembly_YfgL outer 77.1 46 0.00099 31.4 12.2 71 207-295 59-131 (377)
63 TIGR03300 assembly_YfgL outer 75.4 74 0.0016 30.0 15.7 135 181-360 201-344 (377)
64 PF07250 Glyoxal_oxid_N: Glyox 75.3 58 0.0013 28.8 12.5 154 180-361 46-205 (243)
65 COG2706 3-carboxymuconate cycl 75.0 71 0.0015 29.6 16.0 113 231-364 167-286 (346)
66 PRK11138 outer membrane biogen 74.4 81 0.0018 30.0 16.5 134 181-360 216-359 (394)
67 PF13418 Kelch_4: Galactose ox 73.2 6.9 0.00015 24.5 3.8 21 116-136 28-48 (49)
68 COG1520 FOG: WD40-like repeat 72.6 56 0.0012 30.8 11.4 112 209-361 64-178 (370)
69 PLN02772 guanylate kinase 70.5 36 0.00078 32.4 9.2 75 207-285 28-106 (398)
70 COG3055 Uncharacterized protei 70.0 21 0.00046 33.0 7.3 87 180-270 58-151 (381)
71 PF13013 F-box-like_2: F-box-l 65.8 5.2 0.00011 30.4 2.2 28 2-29 23-50 (109)
72 PF10282 Lactonase: Lactonase, 64.4 1.2E+02 0.0027 28.2 17.7 219 97-362 40-285 (345)
73 PF08450 SGL: SMP-30/Gluconola 63.0 1E+02 0.0023 26.8 14.4 73 209-300 5-79 (246)
74 smart00564 PQQ beta-propeller 61.1 24 0.00053 19.6 4.2 26 335-360 5-30 (33)
75 TIGR03075 PQQ_enz_alc_DH PQQ-d 59.0 1.7E+02 0.0038 29.2 12.2 78 207-296 63-147 (527)
76 KOG0316 Conserved WD40 repeat- 58.3 1.3E+02 0.0028 26.4 14.7 114 105-253 28-145 (307)
77 KOG1963 WD40 repeat protein [G 57.1 84 0.0018 32.6 9.4 103 232-361 433-546 (792)
78 PF13570 PQQ_3: PQQ-like domai 56.7 15 0.00032 21.9 2.7 26 207-240 15-40 (40)
79 TIGR03074 PQQ_membr_DH membran 55.1 2.5E+02 0.0054 29.6 12.8 31 207-245 188-220 (764)
80 PF02897 Peptidase_S9_N: Proly 54.8 2E+02 0.0043 27.5 18.7 121 210-362 284-412 (414)
81 cd01206 Homer Homer type EVH1 52.5 40 0.00087 25.5 4.9 40 117-162 11-51 (111)
82 KOG1274 WD40 repeat protein [G 50.1 3.4E+02 0.0073 28.8 18.3 63 276-358 159-222 (933)
83 PF01011 PQQ: PQQ enzyme repea 50.0 32 0.0007 20.2 3.5 24 338-361 2-25 (38)
84 KOG0645 WD40 repeat protein [G 48.8 2E+02 0.0044 25.8 11.0 88 266-378 27-116 (312)
85 PF10282 Lactonase: Lactonase, 48.7 2.3E+02 0.0049 26.4 26.6 171 143-362 145-332 (345)
86 PF12458 DUF3686: ATPase invol 48.7 1.5E+02 0.0033 28.4 9.1 58 103-160 236-301 (448)
87 cd01207 Ena-Vasp Enabled-VASP- 48.6 52 0.0011 25.1 5.1 44 117-163 9-52 (111)
88 PF03088 Str_synth: Strictosid 46.9 36 0.00079 24.8 3.9 17 345-361 36-52 (89)
89 PF15408 PH_7: Pleckstrin homo 46.6 12 0.00026 26.7 1.3 25 18-42 76-100 (104)
90 PF08268 FBA_3: F-box associat 45.4 64 0.0014 25.1 5.6 47 336-382 5-60 (129)
91 KOG2502 Tub family proteins [G 45.2 15 0.00032 33.9 2.0 36 2-37 46-89 (355)
92 KOG0289 mRNA splicing factor [ 44.7 3E+02 0.0064 26.5 11.9 115 209-362 354-470 (506)
93 PLN00181 protein SPA1-RELATED; 44.1 4.1E+02 0.009 28.1 23.1 183 116-356 554-740 (793)
94 PF05096 Glu_cyclase_2: Glutam 43.7 2.4E+02 0.0053 25.3 14.3 143 178-361 66-210 (264)
95 KOG0291 WD40-repeat-containing 43.1 4.1E+02 0.0088 27.7 12.4 56 328-383 438-497 (893)
96 TIGR03866 PQQ_ABC_repeats PQQ- 41.2 2.5E+02 0.0054 24.7 22.0 188 116-361 52-244 (300)
97 PRK05137 tolB translocation pr 40.4 3.5E+02 0.0075 26.1 20.8 139 116-286 225-365 (435)
98 PRK11028 6-phosphogluconolacto 37.5 3.2E+02 0.007 24.9 19.9 205 106-362 1-215 (330)
99 KOG0295 WD40 repeat-containing 36.3 1.6E+02 0.0035 27.5 7.1 67 266-361 304-371 (406)
100 KOG0310 Conserved WD40 repeat- 34.9 4.4E+02 0.0095 25.7 13.9 141 179-364 47-194 (487)
101 KOG0649 WD40 repeat protein [G 34.2 1.4E+02 0.0031 26.4 6.1 63 327-390 116-179 (325)
102 KOG1188 WD40 repeat protein [G 34.1 3.9E+02 0.0085 24.9 9.6 173 91-299 173-361 (376)
103 KOG2055 WD40 repeat protein [G 33.9 1.2E+02 0.0026 29.3 6.0 61 276-362 234-296 (514)
104 KOG0647 mRNA export protein (c 31.7 4.1E+02 0.0089 24.4 9.9 38 328-365 75-113 (347)
105 COG3386 Gluconolactonase [Carb 31.7 4.1E+02 0.009 24.4 11.6 49 214-273 37-85 (307)
106 KOG0319 WD40-repeat-containing 31.6 5.5E+02 0.012 26.6 10.4 65 232-300 41-107 (775)
107 TIGR02658 TTQ_MADH_Hv methylam 31.4 4.5E+02 0.0098 24.8 12.2 107 232-365 28-148 (352)
108 KOG2048 WD40 repeat protein [G 31.3 5.9E+02 0.013 26.1 11.2 143 180-361 403-555 (691)
109 PF14339 DUF4394: Domain of un 30.4 1.6E+02 0.0035 25.8 6.0 54 104-160 37-92 (236)
110 PF13049 DUF3910: Protein of u 30.2 1.9E+02 0.0042 20.1 6.1 57 129-197 9-69 (93)
111 COG4946 Uncharacterized protei 29.6 5.5E+02 0.012 25.2 19.4 49 231-287 382-431 (668)
112 KOG0294 WD40 repeat-containing 29.3 4.6E+02 0.01 24.2 10.5 75 208-301 47-125 (362)
113 KOG3926 F-box proteins [Amino 29.0 44 0.00096 29.7 2.3 35 2-36 203-238 (332)
114 PRK04792 tolB translocation pr 28.7 5.5E+02 0.012 24.9 20.4 139 116-286 241-381 (448)
115 PF14157 YmzC: YmzC-like prote 28.6 70 0.0015 21.4 2.6 15 347-361 42-56 (63)
116 PF06058 DCP1: Dcp1-like decap 27.6 96 0.0021 24.1 3.8 29 339-367 22-50 (122)
117 COG4946 Uncharacterized protei 26.8 6.2E+02 0.013 24.9 14.0 139 181-362 288-439 (668)
118 PF14583 Pectate_lyase22: Olig 26.4 5.8E+02 0.012 24.4 13.0 61 230-295 167-231 (386)
119 KOG2048 WD40 repeat protein [G 25.9 6.2E+02 0.014 25.9 9.6 59 276-360 46-104 (691)
120 KOG0293 WD40 repeat-containing 24.6 2.9E+02 0.0063 26.5 6.8 84 265-377 406-492 (519)
121 PF00568 WH1: WH1 domain; Int 23.9 2.5E+02 0.0055 21.2 5.5 39 117-162 16-55 (111)
122 PF05096 Glu_cyclase_2: Glutam 23.4 5.5E+02 0.012 23.1 14.5 110 212-362 54-166 (264)
123 PF07250 Glyoxal_oxid_N: Glyox 23.3 2.6E+02 0.0056 24.7 6.1 88 232-344 47-136 (243)
124 cd00216 PQQ_DH Dehydrogenases 22.9 5.3E+02 0.011 25.4 9.0 80 181-271 367-454 (488)
125 KOG0283 WD40 repeat-containing 21.6 7.8E+02 0.017 25.6 9.6 98 103-223 378-482 (712)
126 KOG2437 Muskelin [Signal trans 21.2 1.4E+02 0.0031 29.3 4.2 116 122-250 234-365 (723)
127 KOG4378 Nuclear protein COP1 [ 21.1 3.4E+02 0.0073 26.7 6.6 58 276-360 186-245 (673)
128 TIGR02658 TTQ_MADH_Hv methylam 21.1 7E+02 0.015 23.5 23.5 115 211-361 203-338 (352)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=1.5e-35 Score=261.81 Aligned_cols=223 Identities=25% Similarity=0.396 Sum_probs=165.4
Q ss_pred EeecCceEEeeeccccccEEEEcCCCcceecccCccCC--CCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCC
Q 016367 101 VGSCNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQH--AQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPR 178 (390)
Q Consensus 101 ~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 178 (390)
++|||||||+... ..++||||+||+++.||+++.. ......++||||+.+++||||++.... ....
T Consensus 1 ~~sCnGLlc~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~---------~~~~ 68 (230)
T TIGR01640 1 VVPCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS---------GNRN 68 (230)
T ss_pred CcccceEEEEecC---CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec---------CCCC
Confidence 4799999999875 6899999999999999977431 111225799999999999999997632 1113
Q ss_pred CCeEEEEEeCCCCcccccCCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceee-eecCCCCCCCCCc
Q 016367 179 KSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFG-EIGLPDCGSLSVC 257 (390)
Q Consensus 179 ~~~~~vyss~~~~~W~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~~~ 257 (390)
...++||+++++ +||.++..+........+|++||++||+.... .. .....|++||+.+|+|+ .+++|........
T Consensus 69 ~~~~~Vys~~~~-~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~-~~-~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~ 145 (230)
T TIGR01640 69 QSEHQVYTLGSN-SWRTIECSPPHHPLKSRGVCINGVLYYLAYTL-KT-NPDYFIVSFDVSSERFKEFIPLPCGNSDSVD 145 (230)
T ss_pred CccEEEEEeCCC-CccccccCCCCccccCCeEEECCEEEEEEEEC-CC-CCcEEEEEEEcccceEeeeeecCcccccccc
Confidence 468999999999 99998753332222244999999999998764 11 11138999999999999 5899976532223
Q ss_pred ceEEEEeCCeEEEEEe-CCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeC
Q 016367 258 NFHLVVLRGCLSAVHC-LDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKN 336 (390)
Q Consensus 258 ~~~L~~~~G~L~~~~~-~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (390)
...|++++|+||++.. .....++||+|++++. ..|++.++|++ ..... .... ..++++.++
T Consensus 146 ~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~-~~W~k~~~i~~-------------~~~~~---~~~~-~~~~~~~~~ 207 (230)
T TIGR01640 146 YLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGK-QEWSKLFTVPI-------------PPLPD---LVDD-NFLSGFTDK 207 (230)
T ss_pred ceEEEEECCEEEEEEecCCCCcEEEEEECCCCC-CceeEEEEEcC-------------cchhh---hhhh-eeEeEEeeC
Confidence 5789999999999544 3245699999998874 46999999996 22211 1111 457788889
Q ss_pred CceEeeeeC--Ce-EEEEeCCCC
Q 016367 337 GEILLEYAN--GA-LVSYNPENE 356 (390)
Q Consensus 337 g~il~~~~~--~~-l~~yd~~t~ 356 (390)
|+|++...+ .. ++.||++++
T Consensus 208 g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 208 GEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred CEEEEEeCCCCceEEEEEeccCC
Confidence 999988764 34 999999985
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.72 E-value=3.8e-16 Score=130.01 Aligned_cols=152 Identities=26% Similarity=0.423 Sum_probs=104.0
Q ss_pred eEEECCcEEEEEeeccCCCCCceEEEEEECCCcee-eeecCCCCCCCCCcceEEEEe-CCeEEE-EEeCCCCcEEEEEEe
Q 016367 209 EALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDF-GEIGLPDCGSLSVCNFHLVVL-RGCLSA-VHCLDDKGMEIWIMK 285 (390)
Q Consensus 209 ~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~-~~i~lP~~~~~~~~~~~L~~~-~G~L~~-~~~~~~~~~~IW~l~ 285 (390)
+|++||++||++....... ...|++||+++|+| ..+++|...........|++. +|+||+ .+......++||+|+
T Consensus 1 gV~vnG~~hW~~~~~~~~~--~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDE--KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK 78 (164)
T ss_pred CEEECCEEEeeEEecCCCC--ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence 5899999999998762111 12799999999999 889999887633356777554 779999 444435679999999
Q ss_pred eCC-CCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeeeC-------CeEEEEeCCCCc
Q 016367 286 EYK-VRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYAN-------GALVSYNPENEE 357 (390)
Q Consensus 286 ~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~-------~~l~~yd~~t~~ 357 (390)
+++ ++++|+|.++|++ ...... ..... ...+.+.+++++++.... ..++.|+ +++.
T Consensus 79 ~~~~~~~SWtK~~~i~~-------------~~~~~~-~~~~~-~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~ 142 (164)
T PF07734_consen 79 KYGYGKESWTKLFTIDL-------------PPLPSL-FFHFR-NPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGK 142 (164)
T ss_pred eeccCcceEEEEEEEec-------------CCCCCc-ccccc-cceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCE
Confidence 764 2789999999997 222100 00000 112234445566665531 3588888 8888
Q ss_pred EEEEEEeCC-CCceEEEeeecc
Q 016367 358 LKDLVIFDP-PKWFCSIVHVES 378 (390)
Q Consensus 358 ~~~v~~~~~-~~~~~~~~y~~s 378 (390)
.+++.+... ..+..++.|+||
T Consensus 143 ~~~~~~~~~~~~~~~~~~YvpS 164 (164)
T PF07734_consen 143 FIEVDIEDKSSCWPSICNYVPS 164 (164)
T ss_pred EEEcccccCCCCCCCEEEECCC
Confidence 888887433 356678899997
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.65 E-value=4.6e-15 Score=118.35 Aligned_cols=115 Identities=27% Similarity=0.417 Sum_probs=84.5
Q ss_pred eEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCCCCCcceEEEEeCCeEEEEEeCCC---CcEEEEEEe
Q 016367 209 EALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDD---KGMEIWIMK 285 (390)
Q Consensus 209 ~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~~~~~~~~---~~~~IW~l~ 285 (390)
++++||++||++... . .....|++||+.+|+|+.|++|...........|.+++|+|+++..... ..++||+|+
T Consensus 1 gicinGvly~~a~~~-~--~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe 77 (129)
T PF08268_consen 1 GICINGVLYWLAWSE-D--SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE 77 (129)
T ss_pred CEEECcEEEeEEEEC-C--CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEee
Confidence 589999999999872 1 2235999999999999999999222222368899999999999555423 469999999
Q ss_pred eCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEee
Q 016367 286 EYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLE 342 (390)
Q Consensus 286 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~ 342 (390)
|++ +++|++++.+-.. .... ...+.. ..+.++.++|+|++.
T Consensus 78 D~~-k~~Wsk~~~~lp~------------~~~~--~~~~~~-~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 78 DYE-KQEWSKKHIVLPP------------SWQH--FVHDCD-FSFVGVTDTGEIVFA 118 (129)
T ss_pred ccc-cceEEEEEEECCh------------HHhc--ccCCcE-EEEEEEcCCCEEEEE
Confidence 987 6899988664431 1110 011223 788899999998887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.46 E-value=3.8e-11 Score=110.22 Aligned_cols=321 Identities=13% Similarity=0.102 Sum_probs=158.8
Q ss_pred CCCcHHHHHHHHccCC-ccchhhhhhhhHhhhhhhcCCChhhhhhhcCCCCCCeEEEeecCCCCCceEEEEecCCCCCCC
Q 016367 2 ENLPLDVALDILSRLP-ITALVRTKCVCRTWQALAQDPRLPIIYHARASTRDPCLILHYDSPIQNKLCFVSINGDNPDQD 80 (390)
Q Consensus 2 ~~LP~Dll~eIL~rLP-~ksl~r~r~VcK~W~~li~~~~F~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (390)
++||+|||..|..||| .-+++|||+|||+||+.+.... + ..+..+.|.+++..-.|... +...+..... .
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~ 75 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K--KNPFRTRPLILFNPINPSET-LTDDRSYISR---P 75 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c--cCCcccccccccCcccCCCC-cccccccccc---c
Confidence 5799999999999998 6689999999999999887311 0 00011113222211001000 0000000000 0
Q ss_pred CCceeeeccccccccceEE-EEeecCceEEeeecc-ccccEEEEcCCCcceecccCcc----CCCC--cceEEEE-EEec
Q 016367 81 GSRVRRIDARVNSIMAEYQ-VVGSCNGLLCVSDAL-YFNPIIVCNPFTGSYLELAKAT----QHAQ--EELAFGF-GCNS 151 (390)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~s~~GLl~~~~~~-~~~~~~V~NP~T~~~~~LP~~~----~~~~--~~~~~~~-~~d~ 151 (390)
+....+.. + -++. ..++..|+|...+.. ..+.+.+.||+++.-..+|+.. ++.. ..-.+.+ ..+.
T Consensus 76 ~~~ls~~~--~----~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~ 149 (373)
T PLN03215 76 GAFLSRAA--F----FRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAK 149 (373)
T ss_pred cceeeeeE--E----EEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEeccc
Confidence 00000000 0 0110 113567887766542 4678999999999988877531 1110 0011111 1110
Q ss_pred C---CCCe--EEEEEEEeccccccccCCCCCCC-CeEEEE------EeCCCCcccccCCCCcccCCCCceEEECCcEEEE
Q 016367 152 S---TMEY--KVVRIVFNFNTYRSLRDRGWPRK-SDVEVL------TVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWV 219 (390)
Q Consensus 152 ~---~~~y--kvv~~~~~~~~~~~~~~~~~~~~-~~~~vy------ss~~~~~W~~~~~~p~~~~~~~~~v~~~G~lywl 219 (390)
. ...| |++.. ... +.... ..+-|+ --+.+ +|..++. .......-|+++|.+|-+
T Consensus 150 ~~~~~~~~~~~~~~~-~~~---------~~~~~~~vl~i~~~g~l~~w~~~-~Wt~l~~---~~~~~~DIi~~kGkfYAv 215 (373)
T PLN03215 150 RRETRPGYQRSALVK-VKE---------GDNHRDGVLGIGRDGKINYWDGN-VLKALKQ---MGYHFSDIIVHKGQTYAL 215 (373)
T ss_pred ccccccceeEEEEEE-eec---------CCCcceEEEEEeecCcEeeecCC-eeeEccC---CCceeeEEEEECCEEEEE
Confidence 0 0012 11111 111 00000 011111 11246 8888763 222236789999999998
Q ss_pred EeeccCCCCCceEEEEEECCCceeeeecCC--CCCCCC--CcceEEEEeCCeEEEEEeC--C--------------CCcE
Q 016367 220 TMRYKNNPGPRLRIMSFDLAEEDFGEIGLP--DCGSLS--VCNFHLVVLRGCLSAVHCL--D--------------DKGM 279 (390)
Q Consensus 220 ~~~~~~~~~~~~~il~fD~~~e~~~~i~lP--~~~~~~--~~~~~L~~~~G~L~~~~~~--~--------------~~~~ 279 (390)
...+ .+.++|..- +.+.+..+ .....+ ....+|++..|.|.++... . ...+
T Consensus 216 D~~G--------~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f 286 (373)
T PLN03215 216 DSIG--------IVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGF 286 (373)
T ss_pred cCCC--------eEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEE
Confidence 6555 677777432 12222111 111111 1457899999999995441 0 2468
Q ss_pred EEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEE-----EEeeCCceEeeeeCCeEEEEeCC
Q 016367 280 EIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVV-----CDWKNGEILLEYANGALVSYNPE 354 (390)
Q Consensus 280 ~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~g~il~~~~~~~l~~yd~~ 354 (390)
+|+.++.. ...|+++.+++-. .+.. +.+.. .... +. +.+-|++.... ....||++
T Consensus 287 ~VfklD~~--~~~WveV~sLgd~-------------aLFl--G~~~s-~sv~a~e~pG~-k~NcIYFtdd~-~~~v~~~~ 346 (373)
T PLN03215 287 KVYKFDDE--LAKWMEVKTLGDN-------------AFVM--ATDTC-FSVLAHEFYGC-LPNSIYFTEDT-MPKVFKLD 346 (373)
T ss_pred EEEEEcCC--CCcEEEecccCCe-------------EEEE--ECCcc-EEEecCCCCCc-cCCEEEEECCC-cceEEECC
Confidence 88888743 5689999888741 1110 11110 1111 11 22336666544 48899999
Q ss_pred CCcEEEEEEe-CCCCceEEEeeecccc
Q 016367 355 NEELKDLVIF-DPPKWFCSIVHVESLF 380 (390)
Q Consensus 355 t~~~~~v~~~-~~~~~~~~~~y~~sL~ 380 (390)
.++...+... ......+..++.+|++
T Consensus 347 dg~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (373)
T PLN03215 347 NGNGSSIETTISESSQSSFEMFVPSFL 373 (373)
T ss_pred CCCccceEeecCccccchheeeccccC
Confidence 9998777332 2223334567777764
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.15 E-value=4.4e-09 Score=104.43 Aligned_cols=216 Identities=12% Similarity=0.079 Sum_probs=133.3
Q ss_pred EEeecCceEEeeecc-----ccccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCC
Q 016367 100 VVGSCNGLLCVSDAL-----YFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDR 174 (390)
Q Consensus 100 ~~~s~~GLl~~~~~~-----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~ 174 (390)
..+..+|.|.+.++. ....++.+||.+++|..+|+++....... +..++ + |+..++...
T Consensus 298 ~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~~~~~---g--~IYviGG~~--------- 361 (557)
T PHA02713 298 ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--LAVID---D--TIYAIGGQN--------- 361 (557)
T ss_pred EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--EEEEC---C--EEEEECCcC---------
Confidence 345566766665542 12468899999999999999864332222 11222 2 344433211
Q ss_pred CCCCCCeEEEEEeCCCCcccccCCCCcccCCCCceEEECCcEEEEEeeccCC----------------CCCceEEEEEEC
Q 016367 175 GWPRKSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNN----------------PGPRLRIMSFDL 238 (390)
Q Consensus 175 ~~~~~~~~~vyss~~~~~W~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~----------------~~~~~~il~fD~ 238 (390)
+......++.|+..++ +|..++.+|..... ...+.++|.+|.++...... ......+.+||+
T Consensus 362 ~~~~~~sve~Ydp~~~-~W~~~~~mp~~r~~-~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP 439 (557)
T PHA02713 362 GTNVERTIECYTMGDD-KWKMLPDMPIALSS-YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDT 439 (557)
T ss_pred CCCCCceEEEEECCCC-eEEECCCCCccccc-ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECC
Confidence 1122457999999999 99999888765543 45778999999987643110 001236899999
Q ss_pred CCceeeee-cCCCCCCCCCcceEEEEeCCeEEEEEeCCCCcEEEEEEeeC-CCC-CceEEEEEEccCCCcccccCcCcch
Q 016367 239 AEEDFGEI-GLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEY-KVR-ESWSKDYIIGTYLPASLRENARPHL 315 (390)
Q Consensus 239 ~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~-~~~-~~W~~~~~i~~~~~~~~~~~~~~~~ 315 (390)
.+++|+.+ ++|... ....+++.+|+|++++...+.....=..+-| ..+ +.|+.+..++. .
T Consensus 440 ~td~W~~v~~m~~~r----~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-------------~ 502 (557)
T PHA02713 440 VNNIWETLPNFWTGT----IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-------------R 502 (557)
T ss_pred CCCeEeecCCCCccc----ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-------------c
Confidence 99999988 444433 3456789999999955421211111123333 224 58998877664 1
Q ss_pred hhhhccCCCCcceEEEEEeeCCceEeeeeCC---eEEEEeCCCCcEEEE
Q 016367 316 EMLKKSGLGRGSSQVVCDWKNGEILLEYANG---ALVSYNPENEELKDL 361 (390)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~---~l~~yd~~t~~~~~v 361 (390)
.. . .. +++. +|.|++..... .+-.||++|++|..+
T Consensus 503 r~--------~-~~-~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 503 LS--------A-LH-TILH-DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred cc--------c-ce-eEEE-CCEEEEEeeecceeehhhcCcccccccch
Confidence 11 0 22 2222 56677766422 388999999999987
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.10 E-value=1e-08 Score=101.49 Aligned_cols=213 Identities=17% Similarity=0.210 Sum_probs=139.0
Q ss_pred EEeecCceEEeeeccc-----cccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCC
Q 016367 100 VVGSCNGLLCVSDALY-----FNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDR 174 (390)
Q Consensus 100 ~~~s~~GLl~~~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~ 174 (390)
.++..+|.|....+.. ...+..+||.+++|..+|++...+... +.+.- ..++.++....
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~---~v~~l----~g~iYavGG~d--------- 390 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF---GVAVL----DGKLYAVGGFD--------- 390 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc---eeEEE----CCEEEEEeccc---------
Confidence 5666777776665432 357999999999999999996543322 22111 23444444322
Q ss_pred CCCCCCeEEEEEeCCCCcccccCCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeee-cCCCCCC
Q 016367 175 GWPRKSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEI-GLPDCGS 253 (390)
Q Consensus 175 ~~~~~~~~~vyss~~~~~W~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~ 253 (390)
+......+|.|+..++ .|..++.|+... ....++.++|.+|-++... .....-..+.+||+.+++|+.+ +++...
T Consensus 391 g~~~l~svE~YDp~~~-~W~~va~m~~~r-~~~gv~~~~g~iYi~GG~~-~~~~~l~sve~YDP~t~~W~~~~~M~~~R- 466 (571)
T KOG4441|consen 391 GEKSLNSVECYDPVTN-KWTPVAPMLTRR-SGHGVAVLGGKLYIIGGGD-GSSNCLNSVECYDPETNTWTLIAPMNTRR- 466 (571)
T ss_pred cccccccEEEecCCCC-cccccCCCCcce-eeeEEEEECCEEEEEcCcC-CCccccceEEEEcCCCCceeecCCccccc-
Confidence 2334568999999999 999998887633 3256789999999998754 2221235899999999999998 666654
Q ss_pred CCCcceEEEEeCCeEEEEEeCCC-CcEEEEEEeeC-CCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEE
Q 016367 254 LSVCNFHLVVLRGCLSAVHCLDD-KGMEIWIMKEY-KVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVV 331 (390)
Q Consensus 254 ~~~~~~~L~~~~G~L~~~~~~~~-~~~~IW~l~~~-~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (390)
....+++++|+|++++..++ ..++- .+-| ..+..|..+..+.. ... . .. +
T Consensus 467 ---~~~g~a~~~~~iYvvGG~~~~~~~~~--VE~ydp~~~~W~~v~~m~~-------------~rs------~---~g-~ 518 (571)
T KOG4441|consen 467 ---SGFGVAVLNGKIYVVGGFDGTSALSS--VERYDPETNQWTMVAPMTS-------------PRS------A---VG-V 518 (571)
T ss_pred ---ccceEEEECCEEEEECCccCCCccce--EEEEcCCCCceeEcccCcc-------------ccc------c---cc-E
Confidence 35568999999999655322 12221 3322 33678999965554 111 0 11 1
Q ss_pred EEeeCCceEeeee------CCeEEEEeCCCCcEEEE
Q 016367 332 CDWKNGEILLEYA------NGALVSYNPENEELKDL 361 (390)
Q Consensus 332 ~~~~~g~il~~~~------~~~l~~yd~~t~~~~~v 361 (390)
++ -++.+++... -..+-.||+++++|+..
T Consensus 519 ~~-~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 519 VV-LGGKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred EE-ECCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 22 2455666543 13589999999999987
No 7
>PHA03098 kelch-like protein; Provisional
Probab=98.99 E-value=9.9e-08 Score=95.05 Aligned_cols=196 Identities=13% Similarity=0.106 Sum_probs=121.2
Q ss_pred ccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCccccc
Q 016367 117 NPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYL 196 (390)
Q Consensus 117 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~~~ 196 (390)
..++.+||.|++|..+|+++........ ...+ + ++..++... +......+++|+..++ +|+..
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~--~~~~---~--~lyv~GG~~---------~~~~~~~v~~yd~~~~-~W~~~ 373 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPGV--TVFN---N--RIYVIGGIY---------NSISLNTVESWKPGES-KWREE 373 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccceE--EEEC---C--EEEEEeCCC---------CCEecceEEEEcCCCC-ceeeC
Confidence 4689999999999999987543322221 1121 2 233333211 1122457899999999 99998
Q ss_pred CCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeee-cCCCCCCCCCcceEEEEeCCeEEEEEeCC
Q 016367 197 GPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEI-GLPDCGSLSVCNFHLVVLRGCLSAVHCLD 275 (390)
Q Consensus 197 ~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~~~~~~ 275 (390)
+.+|..... ..++.++|.+|-++...... .....+..||+.+++|+.+ ++|... .....+..+|+|++++...
T Consensus 374 ~~lp~~r~~-~~~~~~~~~iYv~GG~~~~~-~~~~~v~~yd~~t~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 374 PPLIFPRYN-PCVVNVNNLIYVIGGISKND-ELLKTVECFSLNTNKWSKGSPLPISH----YGGCAIYHDGKIYVIGGIS 447 (534)
T ss_pred CCcCcCCcc-ceEEEECCEEEEECCcCCCC-cccceEEEEeCCCCeeeecCCCCccc----cCceEEEECCEEEEECCcc
Confidence 877754432 45678899999987643111 1123789999999999987 455433 2445677899999954321
Q ss_pred -CC----cEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeee------
Q 016367 276 -DK----GMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYA------ 344 (390)
Q Consensus 276 -~~----~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~------ 344 (390)
.. .-.+|..+- .+..|..+-.++. ... ....++. ++.|++...
T Consensus 448 ~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~-------------~r~----------~~~~~~~-~~~iyv~GG~~~~~~ 501 (534)
T PHA03098 448 YIDNIKVYNIVESYNP--VTNKWTELSSLNF-------------PRI----------NASLCIF-NNKIYVVGGDKYEYY 501 (534)
T ss_pred CCCCCcccceEEEecC--CCCceeeCCCCCc-------------ccc----------cceEEEE-CCEEEEEcCCcCCcc
Confidence 11 123555552 2568988654332 110 1111222 566766543
Q ss_pred CCeEEEEeCCCCcEEEE
Q 016367 345 NGALVSYNPENEELKDL 361 (390)
Q Consensus 345 ~~~l~~yd~~t~~~~~v 361 (390)
...+..||+++++|+.+
T Consensus 502 ~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 502 INEIEVYDDKTNTWTLF 518 (534)
T ss_pred cceeEEEeCCCCEEEec
Confidence 23589999999999987
No 8
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.96 E-value=5.5e-10 Score=71.82 Aligned_cols=42 Identities=36% Similarity=0.615 Sum_probs=36.7
Q ss_pred CCCCcHHHHHHHHccCCccchhhhhhhhHhhhhhhcCCChhh
Q 016367 1 MENLPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRLPI 42 (390)
Q Consensus 1 i~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~ 42 (390)
|..||+|++.+||++||++++.+++.|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 578999999999999999999999999999999998875544
No 9
>PHA02713 hypothetical protein; Provisional
Probab=98.95 E-value=1.1e-07 Score=94.56 Aligned_cols=198 Identities=12% Similarity=0.087 Sum_probs=121.0
Q ss_pred ccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCccccc
Q 016367 117 NPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYL 196 (390)
Q Consensus 117 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~~~ 196 (390)
..+..+||.|++|..+++++....... ....+ + +|..++... . .......++.|+..++ .|..+
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~--~a~l~----~-~IYviGG~~----~----~~~~~~~v~~Yd~~~n-~W~~~ 335 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYA--SAIVD----N-EIIIAGGYN----F----NNPSLNKVYKINIENK-IHVEL 335 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceE--EEEEC----C-EEEEEcCCC----C----CCCccceEEEEECCCC-eEeeC
Confidence 357889999999999988764332211 11111 1 344443211 0 1112357999999999 99999
Q ss_pred CCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeee-cCCCCCCCCCcceEEEEeCCeEEEEEeCC
Q 016367 197 GPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEI-GLPDCGSLSVCNFHLVVLRGCLSAVHCLD 275 (390)
Q Consensus 197 ~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~~~~~~ 275 (390)
+.||..... ...+.++|.+|-++..... .....+-+||+.+++|+.+ ++|... .....++++|+|++++...
T Consensus 336 ~~m~~~R~~-~~~~~~~g~IYviGG~~~~--~~~~sve~Ydp~~~~W~~~~~mp~~r----~~~~~~~~~g~IYviGG~~ 408 (557)
T PHA02713 336 PPMIKNRCR-FSLAVIDDTIYAIGGQNGT--NVERTIECYTMGDDKWKMLPDMPIAL----SSYGMCVLDQYIYIIGGRT 408 (557)
T ss_pred CCCcchhhc-eeEEEECCEEEEECCcCCC--CCCceEEEEECCCCeEEECCCCCccc----ccccEEEECCEEEEEeCCC
Confidence 888755433 4578999999999875311 1123699999999999988 555543 3456678999999965431
Q ss_pred CCc-----------------EEEEEEeeC-CCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCC
Q 016367 276 DKG-----------------MEIWIMKEY-KVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNG 337 (390)
Q Consensus 276 ~~~-----------------~~IW~l~~~-~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 337 (390)
... ...-.++-| ..++.|+.+..++. ... ...+++. +|
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-------------~r~----------~~~~~~~-~~ 464 (557)
T PHA02713 409 EHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-------------GTI----------RPGVVSH-KD 464 (557)
T ss_pred cccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-------------ccc----------cCcEEEE-CC
Confidence 110 001122222 23568987665543 111 1112233 46
Q ss_pred ceEeeeeC-------CeEEEEeCCC-CcEEEE
Q 016367 338 EILLEYAN-------GALVSYNPEN-EELKDL 361 (390)
Q Consensus 338 ~il~~~~~-------~~l~~yd~~t-~~~~~v 361 (390)
.|++.... ..+..||+++ ++|+.+
T Consensus 465 ~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~ 496 (557)
T PHA02713 465 DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI 496 (557)
T ss_pred EEEEEeCCCCCCccceeEEEecCCCCCCeeEc
Confidence 67776431 2367999999 899988
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.94 E-value=9.3e-08 Score=94.81 Aligned_cols=200 Identities=18% Similarity=0.161 Sum_probs=132.7
Q ss_pred cccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCcccc
Q 016367 116 FNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRY 195 (390)
Q Consensus 116 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~~ 195 (390)
...+..+||.+++|..+.+++...... +.+.-. + +|..++... . +......++.|++.++ .|..
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~r~~~---~~~~~~--~--~lYv~GG~~----~----~~~~l~~ve~YD~~~~-~W~~ 363 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSPRCRV---GVAVLN--G--KLYVVGGYD----S----GSDRLSSVERYDPRTN-QWTP 363 (571)
T ss_pred cceeEEecCCcCcEeecCCCCcccccc---cEEEEC--C--EEEEEcccc----C----CCcccceEEEecCCCC-ceec
Confidence 356788999999999998886433222 222221 1 444443211 0 1234578999999999 9999
Q ss_pred cCCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeee-cCCCCCCCCCcceEEEEeCCeEEEEEeC
Q 016367 196 LGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEI-GLPDCGSLSVCNFHLVVLRGCLSAVHCL 274 (390)
Q Consensus 196 ~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~~~~~ 274 (390)
++.|...... ...+.++|.+|-++..... ..-..+-.||+.+++|+.. +++... ...-.++.+|+||+++..
T Consensus 364 ~a~M~~~R~~-~~v~~l~g~iYavGG~dg~--~~l~svE~YDp~~~~W~~va~m~~~r----~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 364 VAPMNTKRSD-FGVAVLDGKLYAVGGFDGE--KSLNSVECYDPVTNKWTPVAPMLTRR----SGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred cCCccCcccc-ceeEEECCEEEEEeccccc--cccccEEEecCCCCcccccCCCCcce----eeeEEEEECCEEEEEcCc
Confidence 8877655543 4578999999999876522 2223799999999999998 466632 467888999999995543
Q ss_pred CCCcEEEEEEeeC-CCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeeeC------Ce
Q 016367 275 DDKGMEIWIMKEY-KVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYAN------GA 347 (390)
Q Consensus 275 ~~~~~~IW~l~~~-~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~------~~ 347 (390)
+...-.+=..+-| ..++.|+.+..+.. ... ...+++. ++.|+..... ..
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~-------------~R~----------~~g~a~~-~~~iYvvGG~~~~~~~~~ 492 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNT-------------RRS----------GFGVAVL-NGKIYVVGGFDGTSALSS 492 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCccc-------------ccc----------cceEEEE-CCEEEEECCccCCCccce
Confidence 2322233333433 34779999888776 111 2223444 4567776542 23
Q ss_pred EEEEeCCCCcEEEEE
Q 016367 348 LVSYNPENEELKDLV 362 (390)
Q Consensus 348 l~~yd~~t~~~~~v~ 362 (390)
+-.||+++++|..+.
T Consensus 493 VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 493 VERYDPETNQWTMVA 507 (571)
T ss_pred EEEEcCCCCceeEcc
Confidence 889999999999993
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=98.91 E-value=2.2e-07 Score=90.87 Aligned_cols=185 Identities=12% Similarity=0.016 Sum_probs=117.9
Q ss_pred ccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCccccc
Q 016367 117 NPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYL 196 (390)
Q Consensus 117 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~~~ 196 (390)
..+..+||.+++|..+|+++....... +...+ + ++..++. ......++.|+..++ +|..+
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~--~v~~~---~--~iYviGG------------~~~~~sve~ydp~~n-~W~~~ 346 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYAS--GVPAN---N--KLYVVGG------------LPNPTSVERWFHGDA-AWVNM 346 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcce--EEEEC---C--EEEEECC------------cCCCCceEEEECCCC-eEEEC
Confidence 457789999999999998865332222 11222 2 3333332 111245899999999 99999
Q ss_pred CCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCCCCCcceEEEEeCCeEEEEEeCCC
Q 016367 197 GPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDD 276 (390)
Q Consensus 197 ~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~~~~~~~~ 276 (390)
+.+|..... ..++.++|.+|-++... . . ...+..||+.+++|+.++.+.... .....++.+|+|++++..
T Consensus 347 ~~l~~~r~~-~~~~~~~g~IYviGG~~-~-~--~~~ve~ydp~~~~W~~~~~m~~~r---~~~~~~~~~~~IYv~GG~-- 416 (480)
T PHA02790 347 PSLLKPRCN-PAVASINNVIYVIGGHS-E-T--DTTTEYLLPNHDQWQFGPSTYYPH---YKSCALVFGRRLFLVGRN-- 416 (480)
T ss_pred CCCCCCCcc-cEEEEECCEEEEecCcC-C-C--CccEEEEeCCCCEEEeCCCCCCcc---ccceEEEECCEEEEECCc--
Confidence 887754433 46789999999987753 1 1 136788999999999984333221 345667899999997642
Q ss_pred CcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeeeC------CeEEE
Q 016367 277 KGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYAN------GALVS 350 (390)
Q Consensus 277 ~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~------~~l~~ 350 (390)
.++.- ..++.|+....++. ... ....++. +|.|++.... ..+..
T Consensus 417 --~e~yd----p~~~~W~~~~~m~~-------------~r~----------~~~~~v~-~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 417 --AEFYC----ESSNTWTLIDDPIY-------------PRD----------NPELIIV-DNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred --eEEec----CCCCcEeEcCCCCC-------------Ccc----------ccEEEEE-CCEEEEECCcCCCcccceEEE
Confidence 23221 22668998765443 111 1112333 5667776531 35889
Q ss_pred EeCCCCcEEEE
Q 016367 351 YNPENEELKDL 361 (390)
Q Consensus 351 yd~~t~~~~~v 361 (390)
||+++++|+-.
T Consensus 467 Yd~~~~~W~~~ 477 (480)
T PHA02790 467 YNNRTYSWNIW 477 (480)
T ss_pred EECCCCeEEec
Confidence 99999999754
No 12
>PLN02153 epithiospecifier protein
Probab=98.80 E-value=4.3e-06 Score=78.34 Aligned_cols=208 Identities=12% Similarity=0.008 Sum_probs=117.2
Q ss_pred ccEEEEcCCCcceecccCccCCCCc-ceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCcccc
Q 016367 117 NPIIVCNPFTGSYLELAKATQHAQE-ELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRY 195 (390)
Q Consensus 117 ~~~~V~NP~T~~~~~LP~~~~~~~~-~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~~ 195 (390)
..++++||.+++|..+|+....+.. ...+..+.. .+ ++..+.... .......+++|+..++ .|+.
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~--~iyv~GG~~---------~~~~~~~v~~yd~~t~-~W~~ 115 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GT--KLYIFGGRD---------EKREFSDFYSYDTVKN-EWTF 115 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CC--EEEEECCCC---------CCCccCcEEEEECCCC-EEEE
Confidence 4799999999999999876322211 111111111 12 343333211 1112347899999999 9998
Q ss_pred cCCC-----CcccCCCCceEEECCcEEEEEeeccCC----CCCceEEEEEECCCceeeeecCCCCCCCCCcceEEEEeCC
Q 016367 196 LGPV-----PWRLNPGASEALLNGSLHWVTMRYKNN----PGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRG 266 (390)
Q Consensus 196 ~~~~-----p~~~~~~~~~v~~~G~lywl~~~~~~~----~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G 266 (390)
++.+ |... ....++..+|.+|.++...... ...-..+.+||+.+++|..++.+...........+++.+|
T Consensus 116 ~~~~~~~~~p~~R-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~ 194 (341)
T PLN02153 116 LTKLDEEGGPEAR-TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQG 194 (341)
T ss_pred eccCCCCCCCCCc-eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECC
Confidence 8755 2222 1245678899999887653111 0011258899999999998854332111113445678899
Q ss_pred eEEEEEeCC----------CCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeC
Q 016367 267 CLSAVHCLD----------DKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKN 336 (390)
Q Consensus 267 ~L~~~~~~~----------~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (390)
+|+++.... ...-+|++.+-. +.+|+++..... .+. . . . .....+. +
T Consensus 195 ~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~-------------~P~----~-r-~-~~~~~~~-~ 251 (341)
T PLN02153 195 KIWVVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVETTGA-------------KPS----A-R-S-VFAHAVV-G 251 (341)
T ss_pred eEEEEeccccccccCCccceecCceEEEEcC--CCcEEeccccCC-------------CCC----C-c-c-eeeeEEE-C
Confidence 999843210 011245555422 568998764431 010 0 0 0 1112222 3
Q ss_pred CceEeeeeC---------------CeEEEEeCCCCcEEEEE
Q 016367 337 GEILLEYAN---------------GALVSYNPENEELKDLV 362 (390)
Q Consensus 337 g~il~~~~~---------------~~l~~yd~~t~~~~~v~ 362 (390)
+.|++.... ..++.||+++++|+++.
T Consensus 252 ~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 252 KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred CEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 455554321 25899999999999885
No 13
>PLN02193 nitrile-specifier protein
Probab=98.79 E-value=1.8e-06 Score=84.27 Aligned_cols=207 Identities=10% Similarity=0.008 Sum_probs=120.8
Q ss_pred ccEEEEcCCCcceecccCccCCCC-cceEEE-EEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCccc
Q 016367 117 NPIIVCNPFTGSYLELAKATQHAQ-EELAFG-FGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWR 194 (390)
Q Consensus 117 ~~~~V~NP~T~~~~~LP~~~~~~~-~~~~~~-~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~ 194 (390)
..++++||.+++|..+|+....+. ...... ..++ + ++..+.... .......+++|++.++ +|+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~---~--~lYvfGG~~---------~~~~~ndv~~yD~~t~-~W~ 257 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG---S--TLYVFGGRD---------ASRQYNGFYSFDTTTN-EWK 257 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC---C--EEEEECCCC---------CCCCCccEEEEECCCC-EEE
Confidence 468999999999998876532221 111111 1222 1 233332211 1112357999999999 999
Q ss_pred ccCCCCccc--CCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCCCCCcceEEEEeCCeEEEEE
Q 016367 195 YLGPVPWRL--NPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVH 272 (390)
Q Consensus 195 ~~~~~p~~~--~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~~~~ 272 (390)
.+..++..+ ......+..++.+|.+...... .....+.+||+.+.+|+.++.|...........+++.+|+++++.
T Consensus 258 ~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~--~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviG 335 (470)
T PLN02193 258 LLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT--ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVY 335 (470)
T ss_pred EcCcCCCCCCCccceEEEEECCEEEEECCCCCC--CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEE
Confidence 987652211 1124567789999988764311 112368899999999998876543222223456677899999854
Q ss_pred e-CCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeeeC------
Q 016367 273 C-LDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYAN------ 345 (390)
Q Consensus 273 ~-~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~------ 345 (390)
. .....-++|+.+-. +.+|+++..+.. .+.+ . . ....++. ++.|++....
T Consensus 336 G~~g~~~~dv~~yD~~--t~~W~~~~~~g~-------------~P~~-----R-~-~~~~~~~-~~~iyv~GG~~~~~~~ 392 (470)
T PLN02193 336 GFNGCEVDDVHYYDPV--QDKWTQVETFGV-------------RPSE-----R-S-VFASAAV-GKHIVIFGGEIAMDPL 392 (470)
T ss_pred CCCCCccCceEEEECC--CCEEEEeccCCC-------------CCCC-----c-c-eeEEEEE-CCEEEEECCccCCccc
Confidence 3 21223467777632 568998765532 1110 0 0 1112222 3455554321
Q ss_pred ---------CeEEEEeCCCCcEEEEEE
Q 016367 346 ---------GALVSYNPENEELKDLVI 363 (390)
Q Consensus 346 ---------~~l~~yd~~t~~~~~v~~ 363 (390)
..++.||+.|++|+++..
T Consensus 393 ~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 393 AHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred cccCccceeccEEEEEcCcCEEEEccc
Confidence 138999999999999853
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.74 E-value=5.4e-06 Score=77.08 Aligned_cols=157 Identities=14% Similarity=0.095 Sum_probs=93.8
Q ss_pred cEEEE-cCCCc-ceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCcc--
Q 016367 118 PIIVC-NPFTG-SYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTW-- 193 (390)
Q Consensus 118 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W-- 193 (390)
.+++. +|..+ +|..+++++....... +..++ + ++..+.... .......++.|+..++ .|
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~--~~~~~---~--~lyviGG~~---------~~~~~~~v~~~d~~~~-~w~~ 102 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGA--SVSVE---N--GIYYIGGSN---------SSERFSSVYRITLDES-KEEL 102 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceE--EEEEC---C--EEEEEcCCC---------CCCCceeEEEEEEcCC-ceee
Confidence 46666 45433 6888887654332221 22222 1 233333211 1122357889999999 88
Q ss_pred --cccCCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeeec-CCCCCCCCCcceEEEEeCCeEEE
Q 016367 194 --RYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIG-LPDCGSLSVCNFHLVVLRGCLSA 270 (390)
Q Consensus 194 --~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~L~~~~G~L~~ 270 (390)
+.++.+|..... ..++.++|.+|.+........ ...+.+||+.+++|+.++ +|.... .....++.+|+|++
T Consensus 103 ~~~~~~~lp~~~~~-~~~~~~~~~iYv~GG~~~~~~--~~~v~~yd~~~~~W~~~~~~p~~~r---~~~~~~~~~~~iYv 176 (323)
T TIGR03548 103 ICETIGNLPFTFEN-GSACYKDGTLYVGGGNRNGKP--SNKSYLFNLETQEWFELPDFPGEPR---VQPVCVKLQNELYV 176 (323)
T ss_pred eeeEcCCCCcCccC-ceEEEECCEEEEEeCcCCCcc--CceEEEEcCCCCCeeECCCCCCCCC---CcceEEEECCEEEE
Confidence 566666655432 457788999999876421111 237899999999999984 664332 34455788999999
Q ss_pred EEeCC-CCcEEEEEEeeCCCCCceEEEEEE
Q 016367 271 VHCLD-DKGMEIWIMKEYKVRESWSKDYII 299 (390)
Q Consensus 271 ~~~~~-~~~~~IW~l~~~~~~~~W~~~~~i 299 (390)
....+ ....++|..+- .+..|+++..+
T Consensus 177 ~GG~~~~~~~~~~~yd~--~~~~W~~~~~~ 204 (323)
T TIGR03548 177 FGGGSNIAYTDGYKYSP--KKNQWQKVADP 204 (323)
T ss_pred EcCCCCccccceEEEec--CCCeeEECCCC
Confidence 55431 22345665542 25689876544
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.73 E-value=5.7e-06 Score=77.74 Aligned_cols=184 Identities=14% Similarity=0.001 Sum_probs=102.0
Q ss_pred ecCceEEeeeccccccEEEEcC--CCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccC-CCCCCC
Q 016367 103 SCNGLLCVSDALYFNPIIVCNP--FTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRD-RGWPRK 179 (390)
Q Consensus 103 s~~GLl~~~~~~~~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~-~~~~~~ 179 (390)
..++-|.+..+.....+++.++ .+++|..+|+++..++.... ....+ + +|..+.... .... ......
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~-~~~~~---~--~iYv~GG~~----~~~~~~~~~~~ 84 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAV-AAAID---G--KLYVFGGIG----KANSEGSPQVF 84 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccce-EEEEC---C--EEEEEeCCC----CCCCCCcceec
Confidence 3345554443322346777774 67889999987532222111 11222 2 344433211 0000 000113
Q ss_pred CeEEEEEeCCCCcccccCC-CCcccCCCCceE-EECCcEEEEEeeccCC------------C------------------
Q 016367 180 SDVEVLTVGIDHTWRYLGP-VPWRLNPGASEA-LLNGSLHWVTMRYKNN------------P------------------ 227 (390)
Q Consensus 180 ~~~~vyss~~~~~W~~~~~-~p~~~~~~~~~v-~~~G~lywl~~~~~~~------------~------------------ 227 (390)
..++.|+..++ +|+.++. +|..... ..++ .++|.+|.++...... .
T Consensus 85 ~~v~~Yd~~~~-~W~~~~~~~p~~~~~-~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (346)
T TIGR03547 85 DDVYRYDPKKN-SWQKLDTRSPVGLLG-ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPE 162 (346)
T ss_pred ccEEEEECCCC-EEecCCCCCCCcccc-eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChh
Confidence 47999999999 9999863 2222211 2233 6899999987642100 0
Q ss_pred --CCceEEEEEECCCceeeee-cCCCCCCCCCcceEEEEeCCeEEEEEeCC---CCcEEEEEEeeCCCCCceEEEEEEcc
Q 016367 228 --GPRLRIMSFDLAEEDFGEI-GLPDCGSLSVCNFHLVVLRGCLSAVHCLD---DKGMEIWIMKEYKVRESWSKDYIIGT 301 (390)
Q Consensus 228 --~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~~~~~~---~~~~~IW~l~~~~~~~~W~~~~~i~~ 301 (390)
.....+.+||+.+++|+.+ ++|.... ....+++.+|+|+++.... ....++|..+-...+..|.....++.
T Consensus 163 ~~~~~~~v~~YDp~t~~W~~~~~~p~~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~ 239 (346)
T TIGR03547 163 DYFWNKNVLSYDPSTNQWRNLGENPFLGT---AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP 239 (346)
T ss_pred HcCccceEEEEECCCCceeECccCCCCcC---CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence 0013699999999999998 5553221 3456778899999954321 23456776652222568998766543
No 16
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.71 E-value=2.4e-09 Score=69.30 Aligned_cols=43 Identities=33% Similarity=0.521 Sum_probs=36.1
Q ss_pred CCCcHHHHHHHHccCCccchhhhhhhhHhhhhhhcCCChhhhh
Q 016367 2 ENLPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRLPIIY 44 (390)
Q Consensus 2 ~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~~~ 44 (390)
..||+|++.+||.+|+++++.+++.|||+|+.++.++.+...+
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 4699999999999999999999999999999999988776544
No 17
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.70 E-value=9.5e-09 Score=63.97 Aligned_cols=39 Identities=33% Similarity=0.589 Sum_probs=36.5
Q ss_pred CcHHHHHHHHccCCccchhhhhhhhHhhhhhhcCCChhh
Q 016367 4 LPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRLPI 42 (390)
Q Consensus 4 LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~ 42 (390)
||+|++.+||.+|+++++.+++.|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887654
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.63 E-value=1.1e-05 Score=76.54 Aligned_cols=186 Identities=13% Similarity=-0.012 Sum_probs=103.4
Q ss_pred EeecCceEEeeeccccccEEEEcCC--CcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCC-CC
Q 016367 101 VGSCNGLLCVSDALYFNPIIVCNPF--TGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRG-WP 177 (390)
Q Consensus 101 ~~s~~GLl~~~~~~~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~-~~ 177 (390)
.+..++-|.+..+.....++++++. +++|..+|+++..+..... ....+ +. +..+.... ...... ..
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~-~v~~~---~~--IYV~GG~~----~~~~~~~~~ 103 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAV-AAFID---GK--LYVFGGIG----KTNSEGSPQ 103 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccce-EEEEC---CE--EEEEcCCC----CCCCCCcee
Confidence 3444555544433223457777765 5789999876432222111 11122 22 33332211 000000 01
Q ss_pred CCCeEEEEEeCCCCcccccCCC-CcccCCCCceEE-ECCcEEEEEeeccC--CC--------------------------
Q 016367 178 RKSDVEVLTVGIDHTWRYLGPV-PWRLNPGASEAL-LNGSLHWVTMRYKN--NP-------------------------- 227 (390)
Q Consensus 178 ~~~~~~vyss~~~~~W~~~~~~-p~~~~~~~~~v~-~~G~lywl~~~~~~--~~-------------------------- 227 (390)
....++.|+..++ +|+.++.+ |..... ..++. .+|.+|.++..... ..
T Consensus 104 ~~~~v~~YD~~~n-~W~~~~~~~p~~~~~-~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~ 181 (376)
T PRK14131 104 VFDDVYKYDPKTN-SWQKLDTRSPVGLAG-HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK 181 (376)
T ss_pred EcccEEEEeCCCC-EEEeCCCCCCCcccc-eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence 1347999999999 99998742 222211 22344 79999999764310 00
Q ss_pred ----CCceEEEEEECCCceeeee-cCCCCCCCCCcceEEEEeCCeEEEEEeC---CCCcEEEEEEeeCCCCCceEEEEEE
Q 016367 228 ----GPRLRIMSFDLAEEDFGEI-GLPDCGSLSVCNFHLVVLRGCLSAVHCL---DDKGMEIWIMKEYKVRESWSKDYII 299 (390)
Q Consensus 228 ----~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~~~~~---~~~~~~IW~l~~~~~~~~W~~~~~i 299 (390)
.....+.+||+.+++|+.+ ++|.... ....++..+++|+++... .....++|..+-+..+..|+++..+
T Consensus 182 ~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~---~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 258 (376)
T PRK14131 182 PEDYFFNKEVLSYDPSTNQWKNAGESPFLGT---AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL 258 (376)
T ss_pred hhhcCcCceEEEEECCCCeeeECCcCCCCCC---CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC
Confidence 0013699999999999988 4554221 344667789999995432 1345678876633335689987766
Q ss_pred cc
Q 016367 300 GT 301 (390)
Q Consensus 300 ~~ 301 (390)
+.
T Consensus 259 p~ 260 (376)
T PRK14131 259 PP 260 (376)
T ss_pred CC
Confidence 54
No 19
>PLN02153 epithiospecifier protein
Probab=98.51 E-value=3.4e-05 Score=72.30 Aligned_cols=184 Identities=13% Similarity=0.052 Sum_probs=103.2
Q ss_pred EeecCceEEeeecc----ccccEEEEcCCCcceecccCccC--CCCcceEEEEEEecCCCCeEEEEEEEeccccccccC-
Q 016367 101 VGSCNGLLCVSDAL----YFNPIIVCNPFTGSYLELAKATQ--HAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRD- 173 (390)
Q Consensus 101 ~~s~~GLl~~~~~~----~~~~~~V~NP~T~~~~~LP~~~~--~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~- 173 (390)
..++++.|.+-.+. ....++++||.|++|..+|++.. .+......+.... .+ |+..+.... ..+.
T Consensus 81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~--~iyv~GG~~----~~~~~ 152 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--EN--HVYVFGGVS----KGGLM 152 (341)
T ss_pred EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CC--EEEEECCcc----CCCcc
Confidence 44556665554432 13478999999999999986521 0111111122221 12 233332211 0000
Q ss_pred CCCCCCCeEEEEEeCCCCcccccCCCCccc--CCCCceEEECCcEEEEEeecc------CCCCCceEEEEEECCCceeee
Q 016367 174 RGWPRKSDVEVLTVGIDHTWRYLGPVPWRL--NPGASEALLNGSLHWVTMRYK------NNPGPRLRIMSFDLAEEDFGE 245 (390)
Q Consensus 174 ~~~~~~~~~~vyss~~~~~W~~~~~~p~~~--~~~~~~v~~~G~lywl~~~~~------~~~~~~~~il~fD~~~e~~~~ 245 (390)
........+++|+..++ +|+.++.+.... ......+.++|.+|.+..... ........+.+||+.+.+|+.
T Consensus 153 ~~~~~~~~v~~yd~~~~-~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~ 231 (341)
T PLN02153 153 KTPERFRTIEAYNIADG-KWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTE 231 (341)
T ss_pred CCCcccceEEEEECCCC-eEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEe
Confidence 00011246899999999 999987543221 122456789999998764320 000112368999999999998
Q ss_pred ec----CCCCCCCCCcceEEEEeCCeEEEEEeCC---------CC--cEEEEEEeeCCCCCceEEEEEE
Q 016367 246 IG----LPDCGSLSVCNFHLVVLRGCLSAVHCLD---------DK--GMEIWIMKEYKVRESWSKDYII 299 (390)
Q Consensus 246 i~----lP~~~~~~~~~~~L~~~~G~L~~~~~~~---------~~--~~~IW~l~~~~~~~~W~~~~~i 299 (390)
++ +|... .....++.+++|+++.... .. .-++|.++-. +..|+++...
T Consensus 232 ~~~~g~~P~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~~~~ 294 (341)
T PLN02153 232 VETTGAKPSAR----SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKLGEC 294 (341)
T ss_pred ccccCCCCCCc----ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC--ccEEEeccCC
Confidence 84 24322 3445677889999944320 11 1278998843 5689987543
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=98.46 E-value=1.1e-05 Score=79.07 Aligned_cols=140 Identities=11% Similarity=0.011 Sum_probs=94.7
Q ss_pred EEeecCceEEeeecc-ccccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCC
Q 016367 100 VVGSCNGLLCVSDAL-YFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPR 178 (390)
Q Consensus 100 ~~~s~~GLl~~~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 178 (390)
...+.+|-|.+..+. ....+..++|.+++|..+|+++....... +..++ + ++..++... ..
T Consensus 313 ~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~--~~~~~---g--~IYviGG~~-----------~~ 374 (480)
T PHA02790 313 SGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPA--VASIN---N--VIYVIGGHS-----------ET 374 (480)
T ss_pred eEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccE--EEEEC---C--EEEEecCcC-----------CC
Confidence 445678887766653 23467889999999999999865332222 22222 2 333332211 11
Q ss_pred CCeEEEEEeCCCCcccccCCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeee-cCCCCCCCCCc
Q 016367 179 KSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEI-GLPDCGSLSVC 257 (390)
Q Consensus 179 ~~~~~vyss~~~~~W~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~ 257 (390)
...++.|+.+++ .|..++.++..... ..++.++|.+|.++. ...+||+.+++|+.+ ++|... .
T Consensus 375 ~~~ve~ydp~~~-~W~~~~~m~~~r~~-~~~~~~~~~IYv~GG----------~~e~ydp~~~~W~~~~~m~~~r----~ 438 (480)
T PHA02790 375 DTTTEYLLPNHD-QWQFGPSTYYPHYK-SCALVFGRRLFLVGR----------NAEFYCESSNTWTLIDDPIYPR----D 438 (480)
T ss_pred CccEEEEeCCCC-EEEeCCCCCCcccc-ceEEEECCEEEEECC----------ceEEecCCCCcEeEcCCCCCCc----c
Confidence 246899999999 99998877655443 456789999998763 356799999999988 444322 4
Q ss_pred ceEEEEeCCeEEEEEe
Q 016367 258 NFHLVVLRGCLSAVHC 273 (390)
Q Consensus 258 ~~~L~~~~G~L~~~~~ 273 (390)
...+++.+|+|++++.
T Consensus 439 ~~~~~v~~~~IYviGG 454 (480)
T PHA02790 439 NPELIIVDNKLLLIGG 454 (480)
T ss_pred ccEEEEECCEEEEECC
Confidence 5677899999999654
No 21
>PHA03098 kelch-like protein; Provisional
Probab=98.39 E-value=2.2e-05 Score=78.33 Aligned_cols=195 Identities=12% Similarity=0.030 Sum_probs=115.2
Q ss_pred cEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCcccccC
Q 016367 118 PIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYLG 197 (390)
Q Consensus 118 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~~~~ 197 (390)
.+.-+|+.+++|..++..+... .+. +...+ -+++.++... . .......++.|+..++ +|..++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-----~~lyv~GG~~----~----~~~~~~~v~~yd~~~~-~W~~~~ 327 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVY-CFG--SVVLN-----NVIYFIGGMN----K----NNLSVNSVVSYDTKTK-SWNKVP 327 (534)
T ss_pred eeeecchhhhhcccccCccccc-cce--EEEEC-----CEEEEECCCc----C----CCCeeccEEEEeCCCC-eeeECC
Confidence 3455788899998887553211 111 11111 1344333211 0 0112247899999999 999988
Q ss_pred CCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeee-cCCCCCCCCCcceEEEEeCCeEEEEEeC-C
Q 016367 198 PVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEI-GLPDCGSLSVCNFHLVVLRGCLSAVHCL-D 275 (390)
Q Consensus 198 ~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~~~~~-~ 275 (390)
.+|..... ...+.++|.+|-++.... ......+..||+.+.+|+.+ ++|... .....+..+|+|++.+.. .
T Consensus 328 ~~~~~R~~-~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~lp~~r----~~~~~~~~~~~iYv~GG~~~ 400 (534)
T PHA03098 328 ELIYPRKN-PGVTVFNNRIYVIGGIYN--SISLNTVESWKPGESKWREEPPLIFPR----YNPCVVNVNNLIYVIGGISK 400 (534)
T ss_pred CCCccccc-ceEEEECCEEEEEeCCCC--CEecceEEEEcCCCCceeeCCCcCcCC----ccceEEEECCEEEEECCcCC
Confidence 77644332 557889999999876541 11123688999999999987 555433 345567889999995442 1
Q ss_pred -C-CcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeeeC--------
Q 016367 276 -D-KGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYAN-------- 345 (390)
Q Consensus 276 -~-~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~-------- 345 (390)
. ..=.++..+- .+.+|.....++. .. . ... ++..++.|++....
T Consensus 401 ~~~~~~~v~~yd~--~t~~W~~~~~~p~-------------~r-------~---~~~-~~~~~~~iyv~GG~~~~~~~~~ 454 (534)
T PHA03098 401 NDELLKTVECFSL--NTNKWSKGSPLPI-------------SH-------Y---GGC-AIYHDGKIYVIGGISYIDNIKV 454 (534)
T ss_pred CCcccceEEEEeC--CCCeeeecCCCCc-------------cc-------c---Cce-EEEECCEEEEECCccCCCCCcc
Confidence 1 1124455442 2568987654433 11 0 111 12234556665421
Q ss_pred -CeEEEEeCCCCcEEEEE
Q 016367 346 -GALVSYNPENEELKDLV 362 (390)
Q Consensus 346 -~~l~~yd~~t~~~~~v~ 362 (390)
..+..||+++++|+++.
T Consensus 455 ~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 455 YNIVESYNPVTNKWTELS 472 (534)
T ss_pred cceEEEecCCCCceeeCC
Confidence 23899999999999983
No 22
>PLN02193 nitrile-specifier protein
Probab=98.31 E-value=0.00024 Score=69.49 Aligned_cols=158 Identities=12% Similarity=0.119 Sum_probs=91.3
Q ss_pred CeEEEEEeCCCCcccccCC---CCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCCCCC
Q 016367 180 SDVEVLTVGIDHTWRYLGP---VPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSV 256 (390)
Q Consensus 180 ~~~~vyss~~~~~W~~~~~---~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~ 256 (390)
..+++|+..++ +|..++. +|.........+.+++.+|-+...... .....+.+||+.+++|+.+..........
T Consensus 193 ~~v~~yD~~~~-~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~--~~~ndv~~yD~~t~~W~~l~~~~~~P~~R 269 (470)
T PLN02193 193 KHLYVFDLETR-TWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS--RQYNGFYSFDTTTNEWKLLTPVEEGPTPR 269 (470)
T ss_pred CcEEEEECCCC-EEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC--CCCccEEEEECCCCEEEEcCcCCCCCCCc
Confidence 46999999999 9997653 222111123467889999988764311 11136889999999999883221101111
Q ss_pred cceEEEEeCCeEEEEEeC-C-CCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEe
Q 016367 257 CNFHLVVLRGCLSAVHCL-D-DKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDW 334 (390)
Q Consensus 257 ~~~~L~~~~G~L~~~~~~-~-~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (390)
....++..+++|++.... . ...-++|..+-. +.+|+.+..... .. ... . ...+.+.
T Consensus 270 ~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~~~-------------~~-----~~R-~-~~~~~~~ 327 (470)
T PLN02193 270 SFHSMAADEENVYVFGGVSATARLKTLDSYNIV--DKKWFHCSTPGD-------------SF-----SIR-G-GAGLEVV 327 (470)
T ss_pred cceEEEEECCEEEEECCCCCCCCcceEEEEECC--CCEEEeCCCCCC-------------CC-----CCC-C-CcEEEEE
Confidence 344566789999995432 1 222345555422 568986533111 00 000 1 1112233
Q ss_pred eCCceEeeee-----CCeEEEEeCCCCcEEEEEE
Q 016367 335 KNGEILLEYA-----NGALVSYNPENEELKDLVI 363 (390)
Q Consensus 335 ~~g~il~~~~-----~~~l~~yd~~t~~~~~v~~ 363 (390)
++.|++... ...+..||+++++|+++..
T Consensus 328 -~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~ 360 (470)
T PLN02193 328 -QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVET 360 (470)
T ss_pred -CCcEEEEECCCCCccCceEEEECCCCEEEEecc
Confidence 455666542 1459999999999999853
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.30 E-value=0.00023 Score=67.65 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=60.3
Q ss_pred CeEEEEEeCCCCcccccCCCCcccCCCCceEEECCcEEEEEeeccCC-CCCceEEEEEECCCceeeee-cCCCCCCCC--
Q 016367 180 SDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNN-PGPRLRIMSFDLAEEDFGEI-GLPDCGSLS-- 255 (390)
Q Consensus 180 ~~~~vyss~~~~~W~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~~~il~fD~~~e~~~~i-~lP~~~~~~-- 255 (390)
..+++|+..++ .|..++.+|.........+.++|.+|.++...... .........||+.+.+|+.+ ++|......
T Consensus 189 ~~v~~YD~~t~-~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~ 267 (376)
T PRK14131 189 KEVLSYDPSTN-QWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQ 267 (376)
T ss_pred ceEEEEECCCC-eeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcC
Confidence 57999999999 99998877753332245677899999998753111 11123456678899999887 555432110
Q ss_pred --CcceEEEEeCCeEEEEEe
Q 016367 256 --VCNFHLVVLRGCLSAVHC 273 (390)
Q Consensus 256 --~~~~~L~~~~G~L~~~~~ 273 (390)
......++.+|+|++++.
T Consensus 268 ~~~~~~~a~~~~~~iyv~GG 287 (376)
T PRK14131 268 EGVAGAFAGYSNGVLLVAGG 287 (376)
T ss_pred CccceEeceeECCEEEEeec
Confidence 011224678999999543
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.14 E-value=0.00059 Score=64.07 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=58.2
Q ss_pred CeEEEEEeCCCCcccccCCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEE--EEEECCCceeeee-cCCCCCC---
Q 016367 180 SDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRI--MSFDLAEEDFGEI-GLPDCGS--- 253 (390)
Q Consensus 180 ~~~~vyss~~~~~W~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~i--l~fD~~~e~~~~i-~lP~~~~--- 253 (390)
..+++|+..++ +|..++.+|.........+.++|.+|.+...... ......+ ..+|+.+++|+.+ ++|....
T Consensus 168 ~~v~~YDp~t~-~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~ 245 (346)
T TIGR03547 168 KNVLSYDPSTN-QWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKP-GLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQ 245 (346)
T ss_pred ceEEEEECCCC-ceeECccCCCCcCCCceEEEECCEEEEEeeeeCC-CccchheEEEEecCCCceeeecCCCCCCCCCcc
Confidence 57999999999 9999988774332224567889999999765411 1111234 4445577799877 5553211
Q ss_pred CCCcceEEEEeCCeEEEEEe
Q 016367 254 LSVCNFHLVVLRGCLSAVHC 273 (390)
Q Consensus 254 ~~~~~~~L~~~~G~L~~~~~ 273 (390)
........++.+|+|+++..
T Consensus 246 ~~~~~~~a~~~~~~Iyv~GG 265 (346)
T TIGR03547 246 EGLAGAFAGISNGVLLVAGG 265 (346)
T ss_pred ccccEEeeeEECCEEEEeec
Confidence 00012336778999999543
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.02 E-value=0.0018 Score=60.18 Aligned_cols=137 Identities=7% Similarity=-0.087 Sum_probs=81.1
Q ss_pred ccEEEEcCCCcce----ecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCc
Q 016367 117 NPIIVCNPFTGSY----LELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHT 192 (390)
Q Consensus 117 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~ 192 (390)
..++.+|+.+++| ..+|+++....... +..++ + ++..+.... .......+++|+..++ .
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~--~~~~~---~--~iYv~GG~~---------~~~~~~~v~~yd~~~~-~ 150 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGS--ACYKD---G--TLYVGGGNR---------NGKPSNKSYLFNLETQ-E 150 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCce--EEEEC---C--EEEEEeCcC---------CCccCceEEEEcCCCC-C
Confidence 5688899999987 66776654322222 12222 1 333333211 0112457999999999 9
Q ss_pred ccccCCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeeecC-CCCCCC-C-CcceEEEEeCCeEE
Q 016367 193 WRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGL-PDCGSL-S-VCNFHLVVLRGCLS 269 (390)
Q Consensus 193 W~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~l-P~~~~~-~-~~~~~L~~~~G~L~ 269 (390)
|..++.+|.........+.++|.+|-++... ... ...+.+||+.+++|+.++. +..... . .....++..+|+|+
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~-~~~--~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iy 227 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGS-NIA--YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLL 227 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCC-Ccc--ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEE
Confidence 9998876643333244578999999987643 111 1246899999999998843 211100 0 01233445578998
Q ss_pred EEEe
Q 016367 270 AVHC 273 (390)
Q Consensus 270 ~~~~ 273 (390)
++..
T Consensus 228 v~GG 231 (323)
T TIGR03548 228 CIGG 231 (323)
T ss_pred EECC
Confidence 8543
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.56 E-value=0.00048 Score=61.60 Aligned_cols=42 Identities=31% Similarity=0.477 Sum_probs=37.5
Q ss_pred CCCCc----HHHHHHHHccCCccchhhhhhhhHhhhhhhcCCChhh
Q 016367 1 MENLP----LDVALDILSRLPITALVRTKCVCRTWQALAQDPRLPI 42 (390)
Q Consensus 1 i~~LP----~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~ 42 (390)
|..|| +++.+.||+.|...+|+.|..|||+|+.+++++-.-+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 35689 9999999999999999999999999999999876544
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.51 E-value=0.0052 Score=56.61 Aligned_cols=221 Identities=12% Similarity=0.091 Sum_probs=118.2
Q ss_pred ccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCccccc
Q 016367 117 NPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYL 196 (390)
Q Consensus 117 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~~~ 196 (390)
+.+|++|--+.+|..+-.+...+.. .....+..|++ ++.++. +.|-+-..+-.......++|++.+. .|..+
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pR-sshq~va~~s~----~l~~fG--GEfaSPnq~qF~HYkD~W~fd~~tr-kweql 169 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPR-SSHQAVAVPSN----ILWLFG--GEFASPNQEQFHHYKDLWLFDLKTR-KWEQL 169 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCC-ccceeEEeccC----eEEEec--cccCCcchhhhhhhhheeeeeeccc-hheee
Confidence 5699999999999988544211111 12233444443 222221 1110000000011347899999999 99998
Q ss_pred CC--CCcccCCCCceEEECCcEEEEEeeccCCCCCc--eEEEEEECCCceeeeecCCCCCCCCCcceEEEEe-CCeEEE-
Q 016367 197 GP--VPWRLNPGASEALLNGSLHWVTMRYKNNPGPR--LRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVL-RGCLSA- 270 (390)
Q Consensus 197 ~~--~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~--~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~-~G~L~~- 270 (390)
+. -|..... .+-|.....|.-++.-........ .-+.+||+.+-+|+.+..+..........++.+. .|.+++
T Consensus 170 ~~~g~PS~RSG-HRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 170 EFGGGPSPRSG-HRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred ccCCCCCCCcc-ceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEE
Confidence 63 2322211 333433333322221110100001 2489999999999999776653333356677777 788877
Q ss_pred EEeC----------CCCcEEEEEEeeC-C--CCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCC
Q 016367 271 VHCL----------DDKGMEIWIMKEY-K--VRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNG 337 (390)
Q Consensus 271 ~~~~----------~~~~~~IW~l~~~-~--~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 337 (390)
-++. ...+-++|.|+-. + .+-.|.++-.+.+ .+-+ ..+ + .+++++++
T Consensus 249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~-------------kPsp---Rsg---f-sv~va~n~ 308 (521)
T KOG1230|consen 249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGV-------------KPSP---RSG---F-SVAVAKNH 308 (521)
T ss_pred cchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCC-------------CCCC---CCc---e-eEEEecCC
Confidence 3221 1446699999732 2 1236777776666 2221 111 2 23566665
Q ss_pred ceEeee---e------------CCeEEEEeCCCCcEEEEEEeCC
Q 016367 338 EILLEY---A------------NGALVSYNPENEELKDLVIFDP 366 (390)
Q Consensus 338 ~il~~~---~------------~~~l~~yd~~t~~~~~v~~~~~ 366 (390)
.-++.. + -+.|+.||+..++|.+-.+.+.
T Consensus 309 kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~ 352 (521)
T KOG1230|consen 309 KALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGK 352 (521)
T ss_pred ceEEecceecccccchhhhhhhhhhhhheecccchhhHhhhccC
Confidence 533321 1 1349999999999987755443
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.40 E-value=0.0036 Score=54.35 Aligned_cols=167 Identities=16% Similarity=0.124 Sum_probs=101.2
Q ss_pred ccEEEEcCCCcceecccCc---cCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCcc
Q 016367 117 NPIIVCNPFTGSYLELAKA---TQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTW 193 (390)
Q Consensus 117 ~~~~V~NP~T~~~~~LP~~---~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W 193 (390)
+.++-++|-|.+|.+.--. +..++.+.++.++ +.-.|+. +|.++ .......+++++..|- .|
T Consensus 105 N~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g-----n~MyiFG------Gye~~---a~~FS~d~h~ld~~Tm-tW 169 (392)
T KOG4693|consen 105 NLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG-----NQMYIFG------GYEED---AQRFSQDTHVLDFATM-TW 169 (392)
T ss_pred ceeeeeccccccccccceeeecCCccCCceeeEEC-----cEEEEec------ChHHH---HHhhhccceeEeccce-ee
Confidence 4588889999999874322 1222222222222 2222222 22121 1123457889999999 99
Q ss_pred cccC--CCCcccCCCCceEEECCcEEEEEeecc-CC------CCCceEEEEEECCCceeeeecCCCCCCCCCcceEEEEe
Q 016367 194 RYLG--PVPWRLNPGASEALLNGSLHWVTMRYK-NN------PGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVL 264 (390)
Q Consensus 194 ~~~~--~~p~~~~~~~~~v~~~G~lywl~~~~~-~~------~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~ 264 (390)
+.+. ..|.....+..++..+|.+|-++.+.. .+ ...-..|++||+.|+.|...+--.....+.+.....++
T Consensus 170 r~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvY 249 (392)
T KOG4693|consen 170 REMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVY 249 (392)
T ss_pred eehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEE
Confidence 9975 345555555778899999999887652 11 11224799999999999876221112222356677899
Q ss_pred CCeEEEE-EeCC---CCcEEEEEEeeCCCCCceEEEEEEc
Q 016367 265 RGCLSAV-HCLD---DKGMEIWIMKEYKVRESWSKDYIIG 300 (390)
Q Consensus 265 ~G~L~~~-~~~~---~~~~~IW~l~~~~~~~~W~~~~~i~ 300 (390)
+|++++. ++.. ..--++|..+-. +..|+++..-.
T Consensus 250 ng~~Y~FGGYng~ln~HfndLy~FdP~--t~~W~~I~~~G 287 (392)
T KOG4693|consen 250 NGKMYMFGGYNGTLNVHFNDLYCFDPK--TSMWSVISVRG 287 (392)
T ss_pred cceEEEecccchhhhhhhcceeecccc--cchheeeeccC
Confidence 9999993 3432 344478888742 56898865533
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.25 E-value=0.0066 Score=52.77 Aligned_cols=216 Identities=12% Similarity=0.040 Sum_probs=117.2
Q ss_pred cccEEEEcCCCcceecccCcc-C--CCCcceEEEE-EEecCCCCe--EEEEEEEeccccccccCCCCCCCCeEEEEEeCC
Q 016367 116 FNPIIVCNPFTGSYLELAKAT-Q--HAQEELAFGF-GCNSSTMEY--KVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGI 189 (390)
Q Consensus 116 ~~~~~V~NP~T~~~~~LP~~~-~--~~~~~~~~~~-~~d~~~~~y--kvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~ 189 (390)
+-.+.|.|..+-+|..+|+-- . .+....++-+ -|-++.-.| |+....... + ........+-|+.++
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRN----D----~egaCN~Ly~fDp~t 114 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRN----D----DEGACNLLYEFDPET 114 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCcc----C----cccccceeeeecccc
Confidence 678999999999999999841 1 1111110000 000000011 122221100 0 123346788899999
Q ss_pred CCcccccCC---CCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeeecC---CCCCCCCCcceEEEE
Q 016367 190 DHTWRYLGP---VPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGL---PDCGSLSVCNFHLVV 263 (390)
Q Consensus 190 ~~~W~~~~~---~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~l---P~~~~~~~~~~~L~~ 263 (390)
+ .|+..+. +|.... ..++.++++.+|-++.-......-.-.+-+||++|.+|+.+.- |+... ......+
T Consensus 115 ~-~W~~p~v~G~vPgaRD-GHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR---DFH~a~~ 189 (392)
T KOG4693|consen 115 N-VWKKPEVEGFVPGARD-GHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR---DFHTASV 189 (392)
T ss_pred c-cccccceeeecCCccC-CceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh---hhhhhhh
Confidence 9 9998652 333332 2668888888998765431111112368999999999999833 33322 2344556
Q ss_pred eCCeEEEEEe-CC----------CCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEE
Q 016367 264 LRGCLSAVHC-LD----------DKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVC 332 (390)
Q Consensus 264 ~~G~L~~~~~-~~----------~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (390)
++|..++.+. .+ .-.-+|-.|+-. ++.|.+-..-.+ .+. +.. .+..
T Consensus 190 ~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~--T~aW~r~p~~~~-------------~P~----GRR---SHS~- 246 (392)
T KOG4693|consen 190 IDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLA--TGAWTRTPENTM-------------KPG----GRR---SHST- 246 (392)
T ss_pred ccceEEEeccccccCCCccchhhhhcceeEEEecc--ccccccCCCCCc-------------CCC----ccc---ccce-
Confidence 7788888332 21 111133334321 557776533222 111 111 2222
Q ss_pred EeeCCceEeeee--------CCeEEEEeCCCCcEEEEEEeCCC
Q 016367 333 DWKNGEILLEYA--------NGALVSYNPENEELKDLVIFDPP 367 (390)
Q Consensus 333 ~~~~g~il~~~~--------~~~l~~yd~~t~~~~~v~~~~~~ 367 (390)
+.=+|++++... -..++.||++|..|..|...|+.
T Consensus 247 fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~ 289 (392)
T KOG4693|consen 247 FVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKY 289 (392)
T ss_pred EEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCC
Confidence 223667766532 13599999999999999876654
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00029 Score=62.30 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=36.4
Q ss_pred CCCcHHHHHHHHccCCccchhhhhhhhHhhhhhhcCCChh
Q 016367 2 ENLPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRLP 41 (390)
Q Consensus 2 ~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~ 41 (390)
..||||+++.||+.|+.|++++...|||+|+++-++.+..
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 4699999999999999999999999999999998876543
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.59 E-value=0.38 Score=47.30 Aligned_cols=210 Identities=14% Similarity=0.101 Sum_probs=117.7
Q ss_pred cEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCcccccC
Q 016367 118 PIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYLG 197 (390)
Q Consensus 118 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~~~~ 197 (390)
.++++|--++.|.........+.... +....... + +++.+..... .+.....++.|+..|+ .|+.+.
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~--g~~~~~~~-~-~l~lfGG~~~--------~~~~~~~l~~~d~~t~-~W~~l~ 155 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRY--GHSLSAVG-D-KLYLFGGTDK--------KYRNLNELHSLDLSTR-TWSLLS 155 (482)
T ss_pred eeEEeecCCcccccccccCCCCCccc--ceeEEEEC-C-eEEEEccccC--------CCCChhheEeccCCCC-cEEEec
Confidence 59999999988887766633331111 11111111 1 2222221110 1122458999999999 999876
Q ss_pred CC---CcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCCCCCcceEEEEeCCeEEEEEeC
Q 016367 198 PV---PWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCL 274 (390)
Q Consensus 198 ~~---p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~~~~~~ 274 (390)
.. |.... ....+.++..+|..+...... ..-..+.+||+.+.+|..+...............++.+++++++...
T Consensus 156 ~~~~~P~~r~-~Hs~~~~g~~l~vfGG~~~~~-~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~ 233 (482)
T KOG0379|consen 156 PTGDPPPPRA-GHSATVVGTKLVVFGGIGGTG-DSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGG 233 (482)
T ss_pred CcCCCCCCcc-cceEEEECCEEEEECCccCcc-cceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecc
Confidence 42 22222 255667777777776654211 12348999999999999986655444433556777788888884332
Q ss_pred C---CCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeee-------
Q 016367 275 D---DKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYA------- 344 (390)
Q Consensus 275 ~---~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~------- 344 (390)
. .--=++|.|+=. ...|.+.....- . ...+. .....+. +..+++...
T Consensus 234 ~~~~~~l~D~~~ldl~--~~~W~~~~~~g~---------------~----p~~R~-~h~~~~~-~~~~~l~gG~~~~~~~ 290 (482)
T KOG0379|consen 234 DDGDVYLNDVHILDLS--TWEWKLLPTGGD---------------L----PSPRS-GHSLTVS-GDHLLLFGGGTDPKQE 290 (482)
T ss_pred ccCCceecceEeeecc--cceeeeccccCC---------------C----CCCcc-eeeeEEE-CCEEEEEcCCcccccc
Confidence 1 234489998832 235664332221 1 11112 3333332 223444321
Q ss_pred -CCeEEEEeCCCCcEEEEEEeC
Q 016367 345 -NGALVSYNPENEELKDLVIFD 365 (390)
Q Consensus 345 -~~~l~~yd~~t~~~~~v~~~~ 365 (390)
-..++.||.+++.|.++...+
T Consensus 291 ~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 291 PLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cccccccccccccceeeeeccc
Confidence 234889999999999885443
No 32
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.46 E-value=0.0013 Score=58.48 Aligned_cols=45 Identities=27% Similarity=0.411 Sum_probs=39.3
Q ss_pred CCCCcHHHHHHHHccCC-----ccchhhhhhhhHhhhhhhcCCChhhhhh
Q 016367 1 MENLPLDVALDILSRLP-----ITALVRTKCVCRTWQALAQDPRLPIIYH 45 (390)
Q Consensus 1 i~~LP~Dll~eIL~rLP-----~ksl~r~r~VcK~W~~li~~~~F~~~~~ 45 (390)
|+.||||+|.+||.++= ..++.++.+|||.|+-...+|.|-+...
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 46899999999998765 4899999999999999999999876543
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.25 E-value=0.37 Score=47.39 Aligned_cols=156 Identities=15% Similarity=0.078 Sum_probs=98.0
Q ss_pred eEEEEEeCCCCcccccCC---CCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCCCCCc
Q 016367 181 DVEVLTVGIDHTWRYLGP---VPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVC 257 (390)
Q Consensus 181 ~~~vyss~~~~~W~~~~~---~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~ 257 (390)
.+++|+.++. .|..... .|. .......+.++..||.++.... .......+-+||+.+.+|..+..-........
T Consensus 89 dl~~~d~~~~-~w~~~~~~g~~p~-~r~g~~~~~~~~~l~lfGG~~~-~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~ 165 (482)
T KOG0379|consen 89 DLYVLDLESQ-LWTKPAATGDEPS-PRYGHSLSAVGDKLYLFGGTDK-KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRA 165 (482)
T ss_pred eeEEeecCCc-ccccccccCCCCC-cccceeEEEECCeEEEEccccC-CCCChhheEeccCCCCcEEEecCcCCCCCCcc
Confidence 5888888888 8877542 231 1222567888889998877651 12223489999999999998844333222224
Q ss_pred ceEEEEeCCeEEEEEe---CCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEe
Q 016367 258 NFHLVVLRGCLSAVHC---LDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDW 334 (390)
Q Consensus 258 ~~~L~~~~G~L~~~~~---~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (390)
...+++.+.+|++.+. .....-++|+++-. +..|.++.+.+. .+- .+. -+.+.+.
T Consensus 166 ~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~--~~~W~~~~~~g~-------------~P~------pR~-gH~~~~~ 223 (482)
T KOG0379|consen 166 GHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE--TSTWSELDTQGE-------------APS------PRY-GHAMVVV 223 (482)
T ss_pred cceEEEECCEEEEECCccCcccceeeeeeeccc--cccceecccCCC-------------CCC------CCC-CceEEEE
Confidence 5667777788888432 21357799999843 456999888775 221 111 3333444
Q ss_pred eCCceEeeee-C------CeEEEEeCCCCcEEEEE
Q 016367 335 KNGEILLEYA-N------GALVSYNPENEELKDLV 362 (390)
Q Consensus 335 ~~g~il~~~~-~------~~l~~yd~~t~~~~~v~ 362 (390)
+ +.+++... + ..++.+|+.+.+|+++.
T Consensus 224 ~-~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~ 257 (482)
T KOG0379|consen 224 G-NKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP 257 (482)
T ss_pred C-CeEEEEeccccCCceecceEeeecccceeeecc
Confidence 3 34444332 1 24999999999998663
No 34
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.91 E-value=0.65 Score=41.24 Aligned_cols=137 Identities=13% Similarity=0.185 Sum_probs=84.1
Q ss_pred CceEEECCcEEEEEeeccCCCCCceEEEEEECCCceee-eecCCCCCCCC--------CcceEEEEeCCeEEEEEeC--C
Q 016367 207 ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFG-EIGLPDCGSLS--------VCNFHLVVLRGCLSAVHCL--D 275 (390)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~--------~~~~~L~~~~G~L~~~~~~--~ 275 (390)
...|+.||.+|+..... ..|+.||+.++... ...||.....+ .....+++-+..|-++... .
T Consensus 72 tG~vVYngslYY~~~~s-------~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~ 144 (250)
T PF02191_consen 72 TGHVVYNGSLYYNKYNS-------RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN 144 (250)
T ss_pred CCeEEECCcEEEEecCC-------ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC
Confidence 56788999999987643 48999999999998 77888765431 3457778877778774432 1
Q ss_pred CCcEEEEEEeeC--CCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeee-----CCeE
Q 016367 276 DKGMEIWIMKEY--KVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYA-----NGAL 348 (390)
Q Consensus 276 ~~~~~IW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~-----~~~l 348 (390)
...+.|-.|+.. .....|.-- ++- ... -. +|.-.|.++.... ...-
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T~--~~k-------------~~~----------~n--aFmvCGvLY~~~s~~~~~~~I~ 197 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNTS--YPK-------------RSA----------GN--AFMVCGVLYATDSYDTRDTEIF 197 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEec--cCc-------------hhh----------cc--eeeEeeEEEEEEECCCCCcEEE
Confidence 346777777632 222344321 111 000 11 2333455555543 2357
Q ss_pred EEEeCCCCcEEEEEE--eCCCCceEEEeeec
Q 016367 349 VSYNPENEELKDLVI--FDPPKWFCSIVHVE 377 (390)
Q Consensus 349 ~~yd~~t~~~~~v~~--~~~~~~~~~~~y~~ 377 (390)
+.||+.+++-+.+.+ .........+.|-|
T Consensus 198 yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP 228 (250)
T PF02191_consen 198 YAFDTYTGKEEDVSIPFPNPYGNISMLSYNP 228 (250)
T ss_pred EEEECCCCceeceeeeeccccCceEeeeECC
Confidence 999999998887754 33444455566643
No 35
>smart00284 OLF Olfactomedin-like domains.
Probab=95.19 E-value=1.5 Score=38.74 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=52.5
Q ss_pred CceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeee-cCCCCCCC--------CCcceEEEEeCCeEEEEEe--CC
Q 016367 207 ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEI-GLPDCGSL--------SVCNFHLVVLRGCLSAVHC--LD 275 (390)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~--------~~~~~~L~~~~G~L~~~~~--~~ 275 (390)
...|+.||.+|+..... ..|+.||+.+++.... .+|..... +.....|++-+..|-++.. ..
T Consensus 77 tG~VVYngslYY~~~~s-------~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~ 149 (255)
T smart00284 77 TGVVVYNGSLYFNKFNS-------HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN 149 (255)
T ss_pred ccEEEECceEEEEecCC-------ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC
Confidence 56899999999965443 4799999999999644 57753211 2356888888888888433 22
Q ss_pred CCcEEEEEEee
Q 016367 276 DKGMEIWIMKE 286 (390)
Q Consensus 276 ~~~~~IW~l~~ 286 (390)
...|.|-+|+.
T Consensus 150 ~g~ivvSkLnp 160 (255)
T smart00284 150 AGKIVISKLNP 160 (255)
T ss_pred CCCEEEEeeCc
Confidence 57788888874
No 36
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.50 E-value=3 Score=36.33 Aligned_cols=192 Identities=16% Similarity=0.104 Sum_probs=92.7
Q ss_pred cCceEEeeeccccccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEE
Q 016367 104 CNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVE 183 (390)
Q Consensus 104 ~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~ 183 (390)
-+|.+..... ...++.+|+.|++...--........ . .. . .+=+|+... . ...+.
T Consensus 35 ~~~~v~~~~~--~~~l~~~d~~tG~~~W~~~~~~~~~~-~--~~-~----~~~~v~v~~--~-------------~~~l~ 89 (238)
T PF13360_consen 35 DGGRVYVASG--DGNLYALDAKTGKVLWRFDLPGPISG-A--PV-V----DGGRVYVGT--S-------------DGSLY 89 (238)
T ss_dssp ETTEEEEEET--TSEEEEEETTTSEEEEEEECSSCGGS-G--EE-E----ETTEEEEEE--T-------------TSEEE
T ss_pred eCCEEEEEcC--CCEEEEEECCCCCEEEEeeccccccc-e--ee-e----ccccccccc--c-------------eeeeE
Confidence 5777766654 58899999999985422222111000 1 01 1 112222221 1 12677
Q ss_pred EEEeCCCC-ccc-ccCCCCcccCCC-CceEEECCcEEEEEeeccCCCCCceEEEEEECCCcee--ee-ecCCCCCCC---
Q 016367 184 VLTVGIDH-TWR-YLGPVPWRLNPG-ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDF--GE-IGLPDCGSL--- 254 (390)
Q Consensus 184 vyss~~~~-~W~-~~~~~p~~~~~~-~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~--~~-i~lP~~~~~--- 254 (390)
.++..+|+ .|+ .....+...... ......++.+|.....+ .|.++|+.+.+. .. +..|.....
T Consensus 90 ~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 90 ALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG--------KLVALDPKTGKLLWKYPVGEPRGSSPISS 161 (238)
T ss_dssp EEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS--------EEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred ecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC--------cEEEEecCCCcEEEEeecCCCCCCcceee
Confidence 78877776 888 343322221111 23334456666655455 899999987654 22 233332110
Q ss_pred -CCcceEEEEeCCeEEEEEeCCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEE
Q 016367 255 -SVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCD 333 (390)
Q Consensus 255 -~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (390)
......+...+|.+++...+ ...+.+ -++. + +..|.+. +.- ......
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~~-g~~~~~-d~~t-g-~~~w~~~--~~~--------------------------~~~~~~ 209 (238)
T PF13360_consen 162 FSDINGSPVISDGRVYVSSGD-GRVVAV-DLAT-G-EKLWSKP--ISG--------------------------IYSLPS 209 (238)
T ss_dssp ETTEEEEEECCTTEEEEECCT-SSEEEE-ETTT-T-EEEEEEC--SS---------------------------ECECEE
T ss_pred ecccccceEEECCEEEEEcCC-CeEEEE-ECCC-C-CEEEEec--CCC--------------------------ccCCce
Confidence 00123444456766665554 332222 2221 1 1135221 111 111122
Q ss_pred eeCCceEeeeeCCeEEEEeCCCCcEEE
Q 016367 334 WKNGEILLEYANGALVSYNPENEELKD 360 (390)
Q Consensus 334 ~~~g~il~~~~~~~l~~yd~~t~~~~~ 360 (390)
..++.+++...++.++.+|++|++...
T Consensus 210 ~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 210 VDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp CCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred eeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 334445555557889999999998754
No 37
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=93.76 E-value=0.49 Score=37.45 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=51.4
Q ss_pred EEEEEECCCc--eeeeecCCCCCCCC----------CcceEEEEeCCeEEEEEe--C-------CCCcEEEEEEeeC-CC
Q 016367 232 RIMSFDLAEE--DFGEIGLPDCGSLS----------VCNFHLVVLRGCLSAVHC--L-------DDKGMEIWIMKEY-KV 289 (390)
Q Consensus 232 ~il~fD~~~e--~~~~i~lP~~~~~~----------~~~~~L~~~~G~L~~~~~--~-------~~~~~~IW~l~~~-~~ 289 (390)
.|+..|+.++ .++.++||...... .....+++.+|+|-++.. . ....+.+|+|... +.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 6888998765 77888998665321 345678889999977332 1 1557999999974 23
Q ss_pred CCceEEEEEEcc
Q 016367 290 RESWSKDYIIGT 301 (390)
Q Consensus 290 ~~~W~~~~~i~~ 301 (390)
...|.+.++++.
T Consensus 87 ~~~W~~d~~v~~ 98 (131)
T PF07762_consen 87 SWEWKKDCEVDL 98 (131)
T ss_pred CCCEEEeEEEEh
Confidence 678999999998
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.72 E-value=2.9 Score=41.59 Aligned_cols=42 Identities=33% Similarity=0.559 Sum_probs=38.0
Q ss_pred CCCCcHHHHHHHHccCCccchhhhhhhhHhhhhhhcCCChhh
Q 016367 1 MENLPLDVALDILSRLPITALVRTKCVCRTWQALAQDPRLPI 42 (390)
Q Consensus 1 i~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F~~ 42 (390)
+..||.++...||..|+++++++++.||+.|+.++.+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 457999999999999999999999999999999999766655
No 39
>PF13964 Kelch_6: Kelch motif
Probab=93.69 E-value=0.16 Score=32.46 Aligned_cols=42 Identities=10% Similarity=0.151 Sum_probs=31.9
Q ss_pred CceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeee-cCC
Q 016367 207 ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEI-GLP 249 (390)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i-~lP 249 (390)
...|.++|.+|.++..... ......+..||+.+++|+.+ ++|
T Consensus 5 ~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred CEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCC
Confidence 4578999999999876521 22235899999999999998 444
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=92.94 E-value=0.38 Score=30.12 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=32.4
Q ss_pred CceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeee-cCC
Q 016367 207 ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEI-GLP 249 (390)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i-~lP 249 (390)
..++.++|.+|-++.... .......+..||+.+++|..+ ++|
T Consensus 5 ~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 357899999999988762 233346899999999999987 444
No 41
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=92.62 E-value=8.4 Score=36.05 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=83.2
Q ss_pred EEeecCceEEeeeccccccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCC
Q 016367 100 VVGSCNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRK 179 (390)
Q Consensus 100 ~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 179 (390)
+.+-.+.-|++.+. ....+|+++.|+....+|.+........ .+.. .++ +..+.... ..........
T Consensus 71 F~al~gskIv~~d~--~~~t~vyDt~t~av~~~P~l~~pk~~pi--sv~V---G~~--LY~m~~~~----~~~~~~~~~~ 137 (342)
T PF07893_consen 71 FFALHGSKIVAVDQ--SGRTLVYDTDTRAVATGPRLHSPKRCPI--SVSV---GDK--LYAMDRSP----FPEPAGRPDF 137 (342)
T ss_pred EEEecCCeEEEEcC--CCCeEEEECCCCeEeccCCCCCCCcceE--EEEe---CCe--EEEeeccC----ccccccCccc
Confidence 44444444555554 3679999999999999998744222211 2222 222 44433211 0000000001
Q ss_pred CeEEEEEeC--------CCC-cccccCCCCcccCC------C-CceEEECCcEEEEEeeccCCCCCceEEEEEECCCcee
Q 016367 180 SDVEVLTVG--------IDH-TWRYLGPVPWRLNP------G-ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDF 243 (390)
Q Consensus 180 ~~~~vyss~--------~~~-~W~~~~~~p~~~~~------~-~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~ 243 (390)
..+|+++-+ ... +|+.++.+|+.... . ..+|+ +|.--|+...+. ...-.+||+.+.+|
T Consensus 138 ~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~-----~~GTysfDt~~~~W 211 (342)
T PF07893_consen 138 PCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR-----RWGTYSFDTESHEW 211 (342)
T ss_pred eeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCC-----ceEEEEEEcCCcce
Confidence 155665322 111 78887766544432 2 33556 898888866540 02689999999999
Q ss_pred eee---cCCCCCCCC---CcceEEEEe--C--CeEEEEEe
Q 016367 244 GEI---GLPDCGSLS---VCNFHLVVL--R--GCLSAVHC 273 (390)
Q Consensus 244 ~~i---~lP~~~~~~---~~~~~L~~~--~--G~L~~~~~ 273 (390)
+.. .||...... .....++-. + |.||.++.
T Consensus 212 ~~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv 251 (342)
T PF07893_consen 212 RKHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDV 251 (342)
T ss_pred eeccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEec
Confidence 988 888754321 233444433 2 36766443
No 42
>PF13964 Kelch_6: Kelch motif
Probab=92.27 E-value=0.36 Score=30.81 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.4
Q ss_pred cccEEEEcCCCcceecccCccC
Q 016367 116 FNPIIVCNPFTGSYLELAKATQ 137 (390)
Q Consensus 116 ~~~~~V~NP~T~~~~~LP~~~~ 137 (390)
...+.++||.|++|..+|+++.
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cccEEEEcCCCCcEEECCCCCC
Confidence 4789999999999999998753
No 43
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=90.33 E-value=4.2 Score=38.18 Aligned_cols=126 Identities=11% Similarity=0.158 Sum_probs=72.8
Q ss_pred EEEEEECCCceeeeecCCCCCCCCCcceEEEEeCCeEEEEEeC----C----CCcEEEEEEeeCCCCCceEEEEEEccCC
Q 016367 232 RIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCL----D----DKGMEIWIMKEYKVRESWSKDYIIGTYL 303 (390)
Q Consensus 232 ~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~~~~~~----~----~~~~~IW~l~~~~~~~~W~~~~~i~~~~ 303 (390)
-+.+||+.+.+|..+..|...........+++-.|.|.+.+.+ . .+-=++|.++-- +..|+++.--+-+.
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~--trkweql~~~g~PS 176 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLK--TRKWEQLEFGGGPS 176 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeec--cchheeeccCCCCC
Confidence 5899999999999986665544322344555566788874322 1 223389998743 45798875433211
Q ss_pred CcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeee-----e----CCeEEEEeCCCCcEEEEEEeCC----CCce
Q 016367 304 PASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEY-----A----NGALVSYNPENEELKDLVIFDP----PKWF 370 (390)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~-----~----~~~l~~yd~~t~~~~~v~~~~~----~~~~ 370 (390)
+| +. -+ +.+++.--|+|-. + -+.|+.||++|=+|.++...|+ .+.+
T Consensus 177 ~R----------------SG----HR-MvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGc 235 (521)
T KOG1230|consen 177 PR----------------SG----HR-MVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGC 235 (521)
T ss_pred CC----------------cc----ce-eEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcc
Confidence 11 11 11 1234432222210 0 1249999999999999977652 2445
Q ss_pred EEEee-ecccc
Q 016367 371 CSIVH-VESLF 380 (390)
Q Consensus 371 ~~~~y-~~sL~ 380 (390)
++.++ ...++
T Consensus 236 q~~vtpqg~i~ 246 (521)
T KOG1230|consen 236 QFSVTPQGGIV 246 (521)
T ss_pred eEEecCCCcEE
Confidence 66665 44443
No 44
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.22 E-value=8.1 Score=37.39 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=86.0
Q ss_pred ccEEEEcCCCcceecccCc-cCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCC-ccc
Q 016367 117 NPIIVCNPFTGSYLELAKA-TQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDH-TWR 194 (390)
Q Consensus 117 ~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~-~W~ 194 (390)
.++.|+|-+|+||.. |.- .+.+....++||.+|. =+++++..-- +| ..+.=+.|.+.... .||
T Consensus 57 DELHvYNTatnqWf~-PavrGDiPpgcAA~GfvcdG----trilvFGGMv-EY---------GkYsNdLYELQasRWeWk 121 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCDG----TRILVFGGMV-EY---------GKYSNDLYELQASRWEWK 121 (830)
T ss_pred hhhhhhccccceeec-chhcCCCCCchhhcceEecC----ceEEEEccEe-ee---------ccccchHHHhhhhhhhHh
Confidence 469999999999974 433 3444445667777774 2344332100 11 24566778888772 456
Q ss_pred ccCC-C-Cccc----CCCCceEEECCcEEEEEeecc--CC-----CC--CceEEEEEECCCcee--eee----cCCCCCC
Q 016367 195 YLGP-V-PWRL----NPGASEALLNGSLHWVTMRYK--NN-----PG--PRLRIMSFDLAEEDF--GEI----GLPDCGS 253 (390)
Q Consensus 195 ~~~~-~-p~~~----~~~~~~v~~~G~lywl~~~~~--~~-----~~--~~~~il~fD~~~e~~--~~i----~lP~~~~ 253 (390)
.+.. . +.+. ....+-+..++++|.++.-.+ ++ +. ...+++-+-...... ... .+|...+
T Consensus 122 rlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRE 201 (830)
T KOG4152|consen 122 RLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRE 201 (830)
T ss_pred hcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcc
Confidence 6542 1 1221 122455677788998875431 11 11 123455554444432 221 2333322
Q ss_pred CCCcceEE-EEeCC---eEEE-EEeCCCCcEEEEEEeeCCCCCceEEEEEEcc-CCCccc
Q 016367 254 LSVCNFHL-VVLRG---CLSA-VHCLDDKGMEIWIMKEYKVRESWSKDYIIGT-YLPASL 307 (390)
Q Consensus 254 ~~~~~~~L-~~~~G---~L~~-~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~-~~~~~~ 307 (390)
. ....+ .+.|. ++++ -+.....-=++|.|+-+ +..|.+-..-+. ++||.|
T Consensus 202 S--HTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~--Tl~W~kp~~~G~~PlPRSL 257 (830)
T KOG4152|consen 202 S--HTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLD--TLTWNKPSLSGVAPLPRSL 257 (830)
T ss_pred c--ceeEEEEeccCCcceEEEEcccccccccceeEEecc--eeecccccccCCCCCCccc
Confidence 1 11111 12222 3444 23332333489999853 668998533232 245554
No 45
>smart00612 Kelch Kelch domain.
Probab=89.82 E-value=0.74 Score=28.42 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=23.8
Q ss_pred CCeEEEEEeCCCCcccccCCCCcccCCCCceEEECC
Q 016367 179 KSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNG 214 (390)
Q Consensus 179 ~~~~~vyss~~~~~W~~~~~~p~~~~~~~~~v~~~G 214 (390)
...+++|+.+++ .|+..+.+|..... ...+.++|
T Consensus 14 ~~~v~~yd~~~~-~W~~~~~~~~~r~~-~~~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETN-KWTPLPSMPTPRSG-HGVAVING 47 (47)
T ss_pred eeeEEEECCCCC-eEccCCCCCCcccc-ceEEEeCC
Confidence 457999999999 99998877655432 33444443
No 46
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=88.30 E-value=16 Score=31.62 Aligned_cols=139 Identities=14% Similarity=0.101 Sum_probs=77.2
Q ss_pred eEEEEEeCCCC-cccccCCCCcccCCC-CceEEECCcEEEEEeeccCCCCCceEEEEEECCCceee-eecCCCCCCCCCc
Q 016367 181 DVEVLTVGIDH-TWRYLGPVPWRLNPG-ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFG-EIGLPDCGSLSVC 257 (390)
Q Consensus 181 ~~~vyss~~~~-~W~~~~~~p~~~~~~-~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~~~ 257 (390)
.+..++..+|+ .|+.--.. ..... ..++..+|.+|-....+ .+.++|..+.+.. ...++.....
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~--------~l~~~d~~tG~~~W~~~~~~~~~~--- 70 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGP--GIGGPVATAVPDGGRVYVASGDG--------NLYALDAKTGKVLWRFDLPGPISG--- 70 (238)
T ss_dssp EEEEEETTTTEEEEEEECSS--SCSSEEETEEEETTEEEEEETTS--------EEEEEETTTSEEEEEEECSSCGGS---
T ss_pred EEEEEECCCCCEEEEEECCC--CCCCccceEEEeCCEEEEEcCCC--------EEEEEECCCCCEEEEeeccccccc---
Confidence 46777777775 78763211 11110 12455788888775544 9999998665543 3355554321
Q ss_pred ceEEEEeCCeEEEEEeCCCCcEEEEEEe-eCCCCCceEE-EEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEee
Q 016367 258 NFHLVVLRGCLSAVHCLDDKGMEIWIMK-EYKVRESWSK-DYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWK 335 (390)
Q Consensus 258 ~~~L~~~~G~L~~~~~~~~~~~~IW~l~-~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (390)
.....++.+++...+ . .|+.++ ..+ +..|.. ...-+. .... . .....+ .
T Consensus 71 --~~~~~~~~v~v~~~~-~---~l~~~d~~tG-~~~W~~~~~~~~~-------------~~~~-----~---~~~~~~-~ 121 (238)
T PF13360_consen 71 --APVVDGGRVYVGTSD-G---SLYALDAKTG-KVLWSIYLTSSPP-------------AGVR-----S---SSSPAV-D 121 (238)
T ss_dssp --GEEEETTEEEEEETT-S---EEEEEETTTS-CEEEEEEE-SSCT-------------CSTB----------SEEEE-E
T ss_pred --eeeecccccccccce-e---eeEecccCCc-ceeeeeccccccc-------------cccc-----c---ccCceE-e
Confidence 146778888775533 2 677777 444 567874 322121 1110 0 111122 2
Q ss_pred CCceEeeeeCCeEEEEeCCCCcEEEE
Q 016367 336 NGEILLEYANGALVSYNPENEELKDL 361 (390)
Q Consensus 336 ~g~il~~~~~~~l~~yd~~t~~~~~v 361 (390)
++.+++......++.+|++|++...-
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEE
Confidence 34455555577899999999987443
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.86 E-value=0.3 Score=45.78 Aligned_cols=36 Identities=33% Similarity=0.622 Sum_probs=33.6
Q ss_pred CCcHHHHHHHHccCCccchhhhhhhhHhhhhhhcCC
Q 016367 3 NLPLDVALDILSRLPITALVRTKCVCRTWQALAQDP 38 (390)
Q Consensus 3 ~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~ 38 (390)
.||.+++..||+.|..|+++|++.+|+.|+-+..+-
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 589999999999999999999999999999988753
No 48
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=87.42 E-value=1.9 Score=27.25 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=31.0
Q ss_pred CceEEECCcEEEEEeec-cCCCCCceEEEEEECCCceeeeecC
Q 016367 207 ASEALLNGSLHWVTMRY-KNNPGPRLRIMSFDLAEEDFGEIGL 248 (390)
Q Consensus 207 ~~~v~~~G~lywl~~~~-~~~~~~~~~il~fD~~~e~~~~i~l 248 (390)
..++..+|++|.++... .........+-.||+.+.+|+.++.
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 45788999999988761 1222333579999999999998854
No 49
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.20 E-value=20 Score=31.49 Aligned_cols=208 Identities=13% Similarity=0.044 Sum_probs=110.8
Q ss_pred EeecCceEEeeeccccccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCC
Q 016367 101 VGSCNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKS 180 (390)
Q Consensus 101 ~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~ 180 (390)
.+..+|-|.+.+.. ..+++.++|.+++...++.+. ..++.++...+.+.|.. ..
T Consensus 7 ~d~~~g~l~~~D~~-~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g~l~v~~------------------~~ 60 (246)
T PF08450_consen 7 WDPRDGRLYWVDIP-GGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDGRLYVAD------------------SG 60 (246)
T ss_dssp EETTTTEEEEEETT-TTEEEEEETTTTEEEEEESSS-------EEEEEEECTTSEEEEEE------------------TT
T ss_pred EECCCCEEEEEEcC-CCEEEEEECCCCeEEEEecCC-------CceEEEEccCCEEEEEE------------------cC
Confidence 34446666666642 578999999999876544332 34777774334443322 12
Q ss_pred eEEEEEeCCCCcccccCCCCcccCCC----CceEEECCcEEEEEeeccCCCCCc--eEEEEEECCCceeeeecCCCCCCC
Q 016367 181 DVEVLTVGIDHTWRYLGPVPWRLNPG----ASEALLNGSLHWVTMRYKNNPGPR--LRIMSFDLAEEDFGEIGLPDCGSL 254 (390)
Q Consensus 181 ~~~vyss~~~~~W~~~~~~p~~~~~~----~~~v~~~G~lywl~~~~~~~~~~~--~~il~fD~~~e~~~~i~lP~~~~~ 254 (390)
...+++..++ .++.+...+...... .-.+--+|.+|.-.... ...... ..+..++.. .+...+.-....
T Consensus 61 ~~~~~d~~~g-~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~-~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~-- 135 (246)
T PF08450_consen 61 GIAVVDPDTG-KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGG-GGASGIDPGSVYRIDPD-GKVTVVADGLGF-- 135 (246)
T ss_dssp CEEEEETTTT-EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECC-BCTTCGGSEEEEEEETT-SEEEEEEEEESS--
T ss_pred ceEEEecCCC-cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCC-CccccccccceEEECCC-CeEEEEecCccc--
Confidence 4566688998 888776543221111 22344468865544332 111111 579999999 544443111111
Q ss_pred CCcceEEEEeCCe-EEEEEeCCCCcEEEEEEeeCCCCCceEEEEEE-ccCCCcccccCcCcchhhhhccCCCCcceEEEE
Q 016367 255 SVCNFHLVVLRGC-LSAVHCLDDKGMEIWIMKEYKVRESWSKDYII-GTYLPASLRENARPHLEMLKKSGLGRGSSQVVC 332 (390)
Q Consensus 255 ~~~~~~L~~~~G~-L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (390)
.+.-...-+|+ |+++... ... ||..+-......+.....+ .+ ... . .. ..-++
T Consensus 136 --pNGi~~s~dg~~lyv~ds~-~~~--i~~~~~~~~~~~~~~~~~~~~~-------------~~~-----~-g~-pDG~~ 190 (246)
T PF08450_consen 136 --PNGIAFSPDGKTLYVADSF-NGR--IWRFDLDADGGELSNRRVFIDF-------------PGG-----P-GY-PDGLA 190 (246)
T ss_dssp --EEEEEEETTSSEEEEEETT-TTE--EEEEEEETTTCCEEEEEEEEE--------------SSS-----S-CE-EEEEE
T ss_pred --ccceEECCcchheeecccc-cce--eEEEeccccccceeeeeeEEEc-------------CCC-----C-cC-CCcce
Confidence 12222334554 5555554 333 7776643223346554433 33 110 0 11 44467
Q ss_pred EeeCCceEeeee-CCeEEEEeCCCCcEEEEEEe
Q 016367 333 DWKNGEILLEYA-NGALVSYNPENEELKDLVIF 364 (390)
Q Consensus 333 ~~~~g~il~~~~-~~~l~~yd~~t~~~~~v~~~ 364 (390)
+..+|.|++... ..++..||++.+.+++|.+.
T Consensus 191 vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 191 VDSDGNLWVADWGGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp EBTTS-EEEEEETTTEEEEEETTSCEEEEEE-S
T ss_pred EcCCCCEEEEEcCCCEEEEECCCccEEEEEcCC
Confidence 777888877654 67899999997777778776
No 50
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=85.55 E-value=13 Score=35.54 Aligned_cols=101 Identities=12% Similarity=0.052 Sum_probs=59.5
Q ss_pred ceEEEEEECCCceeeeecCCCCCCCCCcceEEEE-eCCeEEEEEeCCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccc
Q 016367 230 RLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVV-LRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLR 308 (390)
Q Consensus 230 ~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~ 308 (390)
+.++.+||+.+.+++.+..|...... .....-+ -++...+.... ...|.+=..+ +..|.--++|+-
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~-~~e~FeVShd~~fia~~G~-~G~I~lLhak----T~eli~s~KieG------- 345 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEK-SMERFEVSHDSNFIAIAGN-NGHIHLLHAK----TKELITSFKIEG------- 345 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccc-hhheeEecCCCCeEEEccc-CceEEeehhh----hhhhhheeeecc-------
Confidence 35999999999999999988876521 1112222 23332222222 4444443333 334554455442
Q ss_pred cCcCcchhhhhccCCCCcceEEEEEeeCCce-EeeeeCCeEEEEeCCCCcEEEE
Q 016367 309 ENARPHLEMLKKSGLGRGSSQVVCDWKNGEI-LLEYANGALVSYNPENEELKDL 361 (390)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i-l~~~~~~~l~~yd~~t~~~~~v 361 (390)
. ..-+++..+|+. +....++.++.+|++++.....
T Consensus 346 -----------------~-v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 346 -----------------V-VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred -----------------E-EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 1 444566666664 4445567899999999976554
No 51
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=85.50 E-value=17 Score=33.64 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=68.0
Q ss_pred CceEEEC--CcEEEEEeeccCCCCCceEEEEEECCCceeeee---cCCCCCC--CC--CcceEEEE---eCCeEEEEEeC
Q 016367 207 ASEALLN--GSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEI---GLPDCGS--LS--VCNFHLVV---LRGCLSAVHCL 274 (390)
Q Consensus 207 ~~~v~~~--G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i---~lP~~~~--~~--~~~~~L~~---~~G~L~~~~~~ 274 (390)
..+++.+ |.+||....+ .|...|++.+.-... ++-...+ .+ ....++.. ..|.|++....
T Consensus 187 ~~~~~~~~~~~~~F~Sy~G--------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~ 258 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSYEG--------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ 258 (342)
T ss_dssp S--EEETTTTEEEEEBTTS--------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred cccceECCCCeEEEEecCC--------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence 4455554 5799998888 999999988765443 2211110 11 11223333 35788882222
Q ss_pred ------CCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCc-eEee-ee-C
Q 016367 275 ------DDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGE-ILLE-YA-N 345 (390)
Q Consensus 275 ------~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-il~~-~~-~ 345 (390)
....=+||+++-. .=.++.+|++ ... ...+.+..+.+ +++. .. +
T Consensus 259 g~~gsHKdpgteVWv~D~~----t~krv~Ri~l-------------~~~----------~~Si~Vsqd~~P~L~~~~~~~ 311 (342)
T PF06433_consen 259 GGEGSHKDPGTEVWVYDLK----THKRVARIPL-------------EHP----------IDSIAVSQDDKPLLYALSAGD 311 (342)
T ss_dssp --TT-TTS-EEEEEEEETT----TTEEEEEEEE-------------EEE----------ESEEEEESSSS-EEEEEETTT
T ss_pred CCCCCccCCceEEEEEECC----CCeEEEEEeC-------------CCc----------cceEEEccCCCcEEEEEcCCC
Confidence 1567799999832 2257888887 221 33567777666 4543 33 4
Q ss_pred CeEEEEeCCCCcEEE
Q 016367 346 GALVSYNPENEELKD 360 (390)
Q Consensus 346 ~~l~~yd~~t~~~~~ 360 (390)
..++.||..|++..+
T Consensus 312 ~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 312 GTLDVYDAATGKLVR 326 (342)
T ss_dssp TEEEEEETTT--EEE
T ss_pred CeEEEEeCcCCcEEe
Confidence 569999999997644
No 52
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.48 E-value=17 Score=32.59 Aligned_cols=125 Identities=12% Similarity=0.112 Sum_probs=71.6
Q ss_pred EEeecCceEEeeeccccccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCC
Q 016367 100 VVGSCNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRK 179 (390)
Q Consensus 100 ~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 179 (390)
+++.-+|=|-...- ..+.+...||.++.-..+|++........ ...-|+- --+++.. ...
T Consensus 194 i~atpdGsvwyasl-agnaiaridp~~~~aev~p~P~~~~~gsR--riwsdpi----g~~witt-------------wg~ 253 (353)
T COG4257 194 ICATPDGSVWYASL-AGNAIARIDPFAGHAEVVPQPNALKAGSR--RIWSDPI----GRAWITT-------------WGT 253 (353)
T ss_pred eEECCCCcEEEEec-cccceEEcccccCCcceecCCCccccccc--ccccCcc----CcEEEec-------------cCC
Confidence 34444444443321 13567778999998888887743111111 2222321 1122221 123
Q ss_pred CeEEEEEeCCCCcccccCCCCcccCCCCceEEECCc-EEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCC
Q 016367 180 SDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGS-LHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGS 253 (390)
Q Consensus 180 ~~~~vyss~~~~~W~~~~~~p~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~ 253 (390)
-.++.|+..+. +|.+-...-.... ...++++.. .-|+.+-+ ...|+.||+++++|+.+++|....
T Consensus 254 g~l~rfdPs~~-sW~eypLPgs~ar--pys~rVD~~grVW~sea~------agai~rfdpeta~ftv~p~pr~n~ 319 (353)
T COG4257 254 GSLHRFDPSVT-SWIEYPLPGSKAR--PYSMRVDRHGRVWLSEAD------AGAIGRFDPETARFTVLPIPRPNS 319 (353)
T ss_pred ceeeEeCcccc-cceeeeCCCCCCC--cceeeeccCCcEEeeccc------cCceeecCcccceEEEecCCCCCC
Confidence 57888999998 9988643212221 234555543 55665433 248999999999999999987653
No 53
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=84.13 E-value=1.2 Score=27.72 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=17.9
Q ss_pred cccEEEEcCCCcceecccCc
Q 016367 116 FNPIIVCNPFTGSYLELAKA 135 (390)
Q Consensus 116 ~~~~~V~NP~T~~~~~LP~~ 135 (390)
...+.++||.|++|..+|++
T Consensus 27 ~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 27 TNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp EEEEEEEETTTTEEEEEEEE
T ss_pred eeeEEEEeCCCCEEEEcCCC
Confidence 56799999999999999876
No 54
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.10 E-value=24 Score=32.69 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=70.5
Q ss_pred CeEEEEEeCCCCcccccCC-CCcccCCCCceEEECC-cEEEEEeecc------------C---------------CC---
Q 016367 180 SDVEVLTVGIDHTWRYLGP-VPWRLNPGASEALLNG-SLHWVTMRYK------------N---------------NP--- 227 (390)
Q Consensus 180 ~~~~vyss~~~~~W~~~~~-~p~~~~~~~~~v~~~G-~lywl~~~~~------------~---------------~~--- 227 (390)
..++.|+..++ +|..++. .|.... ...++..++ .+|....... . +.
T Consensus 113 nd~Y~y~p~~n-sW~kl~t~sP~gl~-G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~ 190 (381)
T COG3055 113 NDAYRYDPSTN-SWHKLDTRSPTGLV-GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAE 190 (381)
T ss_pred eeeEEecCCCC-hhheeccccccccc-cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHH
Confidence 36888999999 9999875 344422 244455555 6666543210 0 00
Q ss_pred --CCceEEEEEECCCceeeee-cCCCCCCCCCcceEEEEeCCeEEEEEeC---CCCcEEEEEEeeCCCCCceEEEEEEcc
Q 016367 228 --GPRLRIMSFDLAEEDFGEI-GLPDCGSLSVCNFHLVVLRGCLSAVHCL---DDKGMEIWIMKEYKVRESWSKDYIIGT 301 (390)
Q Consensus 228 --~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~~~~~---~~~~~~IW~l~~~~~~~~W~~~~~i~~ 301 (390)
--...+++||+.+++|+.. ..|..... ....+..+++|.++..+ .-.+-++|+.+-.++...|.++-.++.
T Consensus 191 dy~~n~ev~sy~p~~n~W~~~G~~pf~~~a---Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 191 DYFFNKEVLSYDPSTNQWRNLGENPFYGNA---GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred HhcccccccccccccchhhhcCcCcccCcc---CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence 0123699999999999999 57876542 22333345557774332 145666777664444678998866554
No 55
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=83.12 E-value=30 Score=30.03 Aligned_cols=118 Identities=10% Similarity=0.075 Sum_probs=63.5
Q ss_pred EECCcEEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCCC--CCcceEEEEe--CC--eEEE-EEe---CCCCcEE
Q 016367 211 LLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSL--SVCNFHLVVL--RG--CLSA-VHC---LDDKGME 280 (390)
Q Consensus 211 ~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~--~~~~~~L~~~--~G--~L~~-~~~---~~~~~~~ 280 (390)
.+||-+ .+.... .++..|+.|.++..+|.|..... ......++-. .+ ++.. ... .....++
T Consensus 3 sCnGLl-c~~~~~--------~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~ 73 (230)
T TIGR01640 3 PCDGLI-CFSYGK--------RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQ 73 (230)
T ss_pred ccceEE-EEecCC--------cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEE
Confidence 467777 333222 79999999999999976654211 0011122221 11 2222 221 1135677
Q ss_pred EEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeeeC------CeEEEEeCC
Q 016367 281 IWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYAN------GALVSYNPE 354 (390)
Q Consensus 281 IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~------~~l~~yd~~ 354 (390)
|..++ +++|........ ... . ... ++.-+|.+.+.... ..++.||++
T Consensus 74 Vys~~----~~~Wr~~~~~~~-------------~~~------~---~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~ 126 (230)
T TIGR01640 74 VYTLG----SNSWRTIECSPP-------------HHP------L---KSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVS 126 (230)
T ss_pred EEEeC----CCCccccccCCC-------------Ccc------c---cCC-eEEECCEEEEEEEECCCCCcEEEEEEEcc
Confidence 77776 347887652111 000 0 111 33336777666532 169999999
Q ss_pred CCcEEE-EEEe
Q 016367 355 NEELKD-LVIF 364 (390)
Q Consensus 355 t~~~~~-v~~~ 364 (390)
++++++ +..+
T Consensus 127 ~E~f~~~i~~P 137 (230)
T TIGR01640 127 SERFKEFIPLP 137 (230)
T ss_pred cceEeeeeecC
Confidence 999995 6543
No 56
>smart00612 Kelch Kelch domain.
Probab=81.65 E-value=4.5 Score=24.69 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=19.0
Q ss_pred cccEEEEcCCCcceecccCccCC
Q 016367 116 FNPIIVCNPFTGSYLELAKATQH 138 (390)
Q Consensus 116 ~~~~~V~NP~T~~~~~LP~~~~~ 138 (390)
...+.++||.|++|..+|+++..
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCc
Confidence 35688999999999999987543
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=79.65 E-value=35 Score=32.50 Aligned_cols=114 Identities=14% Similarity=0.097 Sum_probs=62.4
Q ss_pred ceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeee-ecCCCCCCC------CCcceEEEEeCCeEEEEEeCCCCcEE
Q 016367 208 SEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGE-IGLPDCGSL------SVCNFHLVVLRGCLSAVHCLDDKGME 280 (390)
Q Consensus 208 ~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~------~~~~~~L~~~~G~L~~~~~~~~~~~~ 280 (390)
.+++.+|.+|.....+ .+.+||..+.+... .+++..... ..........+|++++...+ . .
T Consensus 64 sPvv~~~~vy~~~~~g--------~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~--g--~ 131 (394)
T PRK11138 64 HPAVAYNKVYAADRAG--------LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK--G--Q 131 (394)
T ss_pred ccEEECCEEEEECCCC--------eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCC--C--E
Confidence 5788999999877665 89999987544322 244331100 00112345667787774332 1 3
Q ss_pred EEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeeeCCeEEEEeCCCCcEEE
Q 016367 281 IWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYANGALVSYNPENEELKD 360 (390)
Q Consensus 281 IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~~l~~yd~~t~~~~~ 360 (390)
+..++-...+..|+... +- .. . ..|+ +. ++.+++...+..++.+|.+|++...
T Consensus 132 l~ald~~tG~~~W~~~~--~~--------------~~--------~-ssP~-v~-~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 132 VYALNAEDGEVAWQTKV--AG--------------EA--------L-SRPV-VS-DGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred EEEEECCCCCCcccccC--CC--------------ce--------e-cCCE-EE-CCEEEEECCCCEEEEEEccCCCEee
Confidence 55555322256787542 11 00 0 1222 22 4556655556678888988887653
No 58
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=79.55 E-value=5 Score=25.26 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=18.9
Q ss_pred cccEEEEcCCCcceecccCccCC
Q 016367 116 FNPIIVCNPFTGSYLELAKATQH 138 (390)
Q Consensus 116 ~~~~~V~NP~T~~~~~LP~~~~~ 138 (390)
...++++||.|++|.+++..+..
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~~ 40 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPPP 40 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCCC
Confidence 46799999999999999766543
No 59
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=77.70 E-value=28 Score=30.58 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=54.9
Q ss_pred cccccCCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCcee-eeecCCCCCCCC--------CcceEEE
Q 016367 192 TWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDF-GEIGLPDCGSLS--------VCNFHLV 262 (390)
Q Consensus 192 ~W~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~-~~i~lP~~~~~~--------~~~~~L~ 262 (390)
.|...-.+|..... ...|+.||.+|...... ..|+.||+.++.- ....+|.....+ .....++
T Consensus 57 ~~~~~~~lp~~~~g-Tg~VVynGs~yynk~~t-------~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~a 128 (249)
T KOG3545|consen 57 RKAEKYRLPYSWDG-TGHVVYNGSLYYNKAGT-------RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLA 128 (249)
T ss_pred CcceEEeCCCCccc-cceEEEcceEEeeccCC-------cceEEEEeecceeeeeeeccccccCCCcccccCCCccccce
Confidence 56555556655544 56899999999876543 4899999998543 444666543221 3446777
Q ss_pred EeCCeEEEEE--eCCCCcEEEEEEee
Q 016367 263 VLRGCLSAVH--CLDDKGMEIWIMKE 286 (390)
Q Consensus 263 ~~~G~L~~~~--~~~~~~~~IW~l~~ 286 (390)
+.+..|.++. .++...+.|-.|+.
T Consensus 129 vDE~GLWviYat~~~~g~iv~skLdp 154 (249)
T KOG3545|consen 129 VDENGLWVIYATPENAGTIVLSKLDP 154 (249)
T ss_pred ecccceeEEecccccCCcEEeeccCH
Confidence 7776676632 22355666666664
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=77.34 E-value=63 Score=30.21 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=59.0
Q ss_pred EEEEEECCCceeeeecCCCCCCCCCcceEEEEeCCeEEEEEeC--C--CC-----cEEEEEEee----CCCCCceEEEEE
Q 016367 232 RIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCL--D--DK-----GMEIWIMKE----YKVRESWSKDYI 298 (390)
Q Consensus 232 ~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~~~~~~--~--~~-----~~~IW~l~~----~~~~~~W~~~~~ 298 (390)
..+.||..+......|...... .....+..+|+||+.... . .. .+++=.... ......|.-..
T Consensus 87 ~t~vyDt~t~av~~~P~l~~pk---~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~- 162 (342)
T PF07893_consen 87 RTLVYDTDTRAVATGPRLHSPK---RCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS- 162 (342)
T ss_pred CeEEEECCCCeEeccCCCCCCC---cceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-
Confidence 6899999988877553322211 233444458889983221 1 11 455443331 11234555433
Q ss_pred EccCCCcccccCcCcchhhhhcc-CCCCcceEEEEEeeCCc-eEeeeeCC--eEEEEeCCCCcEEEE
Q 016367 299 IGTYLPASLRENARPHLEMLKKS-GLGRGSSQVVCDWKNGE-ILLEYANG--ALVSYNPENEELKDL 361 (390)
Q Consensus 299 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~-il~~~~~~--~l~~yd~~t~~~~~v 361 (390)
++. .++.... ..... +...++. +|. |++..... +.|.||.++.+|+++
T Consensus 163 LP~-------------PPf~~~~~~~~~~-i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 163 LPP-------------PPFVRDRRYSDYR-ITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred CCC-------------CCccccCCcccce-EEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 332 1111000 01111 4455666 554 66655554 799999999999998
No 61
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=77.11 E-value=4.9 Score=25.21 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=22.1
Q ss_pred ceEEE-CCcEEEEEeeccCCCCCceEEEEEECCCceeeee
Q 016367 208 SEALL-NGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEI 246 (390)
Q Consensus 208 ~~v~~-~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i 246 (390)
.++.+ ++.+|-++...... ..-..+..||+.+++|+.+
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~-~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSG-SPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-T-EE---EEEEETTTTEEEE-
T ss_pred EEEEEeCCeEEEECCCCCCC-cccCCEEEEECCCCEEEEC
Confidence 35556 57888776654221 1113688999999999998
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=77.07 E-value=46 Score=31.37 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=39.8
Q ss_pred CceEEECCcEEEEEeeccCCCCCceEEEEEECCCceee-eecCCCCCCCCCcceEEEEeCCeEEEEEeCCCCcEEEEEEe
Q 016367 207 ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFG-EIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMK 285 (390)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~ 285 (390)
..++..+|.+|.....+ .+.+||..+.+-. ..+++.... ...+..++.+++...+ . .++.++
T Consensus 59 ~~p~v~~~~v~v~~~~g--------~v~a~d~~tG~~~W~~~~~~~~~-----~~p~v~~~~v~v~~~~--g--~l~ald 121 (377)
T TIGR03300 59 LQPAVAGGKVYAADADG--------TVVALDAETGKRLWRVDLDERLS-----GGVGADGGLVFVGTEK--G--EVIALD 121 (377)
T ss_pred cceEEECCEEEEECCCC--------eEEEEEccCCcEeeeecCCCCcc-----cceEEcCCEEEEEcCC--C--EEEEEE
Confidence 35678899998776665 8999998765443 235554321 1233445666653332 2 344444
Q ss_pred e-CCCCCceEE
Q 016367 286 E-YKVRESWSK 295 (390)
Q Consensus 286 ~-~~~~~~W~~ 295 (390)
- .+ +..|..
T Consensus 122 ~~tG-~~~W~~ 131 (377)
T TIGR03300 122 AEDG-KELWRA 131 (377)
T ss_pred CCCC-cEeeee
Confidence 2 23 456754
No 63
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=75.38 E-value=74 Score=29.96 Aligned_cols=135 Identities=13% Similarity=0.090 Sum_probs=71.8
Q ss_pred eEEEEEeCCCC-cccccCCCCccc-------CCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeee-cCCCC
Q 016367 181 DVEVLTVGIDH-TWRYLGPVPWRL-------NPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEI-GLPDC 251 (390)
Q Consensus 181 ~~~vyss~~~~-~W~~~~~~p~~~-------~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i-~lP~~ 251 (390)
.+..++..+|+ .|+.-...+... .....++..+|.+|.....+ .+.++|..+.+.... +.+.
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g--------~l~a~d~~tG~~~W~~~~~~- 271 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQG--------RVAALDLRSGRVLWKRDASS- 271 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCC--------EEEEEECCCCcEEEeeccCC-
Confidence 46666766664 676432111111 01145677899999877666 899999976543322 2221
Q ss_pred CCCCCcceEEEEeCCeEEEEEeCCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEE
Q 016367 252 GSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVV 331 (390)
Q Consensus 252 ~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (390)
.......+|.+++... ...+..+-... + +..|.... +.. . .. ..|+
T Consensus 272 ------~~~p~~~~~~vyv~~~--~G~l~~~d~~t-G-~~~W~~~~-~~~-------------~---------~~-ssp~ 317 (377)
T TIGR03300 272 ------YQGPAVDDNRLYVTDA--DGVVVALDRRS-G-SELWKNDE-LKY-------------R---------QL-TAPA 317 (377)
T ss_pred ------ccCceEeCCEEEEECC--CCeEEEEECCC-C-cEEEcccc-ccC-------------C---------cc-ccCE
Confidence 1233455677776443 33344333321 2 34565421 111 0 01 2222
Q ss_pred EEeeCCceEeeeeCCeEEEEeCCCCcEEE
Q 016367 332 CDWKNGEILLEYANGALVSYNPENEELKD 360 (390)
Q Consensus 332 ~~~~~g~il~~~~~~~l~~yd~~t~~~~~ 360 (390)
+ .++.|++...+..++.+|.++++...
T Consensus 318 -i-~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 318 -V-VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred -E-ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 2 24556666667789999999887654
No 64
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=75.30 E-value=58 Score=28.78 Aligned_cols=154 Identities=14% Similarity=0.066 Sum_probs=77.3
Q ss_pred CeEEEEEeCCCCcccccCCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCC----ceeeeecCCCCCCCC
Q 016367 180 SDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAE----EDFGEIGLPDCGSLS 255 (390)
Q Consensus 180 ~~~~vyss~~~~~W~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~----e~~~~i~lP~~~~~~ 255 (390)
....+|+..++ +++.+.. .....+....+.-||.+.-..... +.. ..+-.|++.+ .+|.. .|......
T Consensus 46 a~s~~yD~~tn-~~rpl~v-~td~FCSgg~~L~dG~ll~tGG~~--~G~--~~ir~~~p~~~~~~~~w~e--~~~~m~~~ 117 (243)
T PF07250_consen 46 AHSVEYDPNTN-TFRPLTV-QTDTFCSGGAFLPDGRLLQTGGDN--DGN--KAIRIFTPCTSDGTCDWTE--SPNDMQSG 117 (243)
T ss_pred EEEEEEecCCC-cEEeccC-CCCCcccCcCCCCCCCEEEeCCCC--ccc--cceEEEecCCCCCCCCceE--CcccccCC
Confidence 45677888888 8887753 233334344566677765433322 111 2566788765 34433 33222222
Q ss_pred CcceEEEEe-CCeEEEEEeCCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEe
Q 016367 256 VCNFHLVVL-RGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDW 334 (390)
Q Consensus 256 ~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (390)
........+ +|++.++........+.|=-+... .. ...+++ .... ... ..... +-.+.+.
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~-~~----~~~~~~--l~~~-------~~~----~~~nl-YP~~~ll 178 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG-PG----PVTLPF--LSQT-------SDT----LPNNL-YPFVHLL 178 (243)
T ss_pred CccccceECCCCCEEEEeCcCCCcccccCCccCC-CC----ceeeec--chhh-------hcc----Ccccc-CceEEEc
Confidence 233344443 788888655435555555332111 11 111111 0000 000 00111 2234567
Q ss_pred eCCceEeeeeCCeEEEEeCCCCcE-EEE
Q 016367 335 KNGEILLEYANGALVSYNPENEEL-KDL 361 (390)
Q Consensus 335 ~~g~il~~~~~~~l~~yd~~t~~~-~~v 361 (390)
.+|+|++....+ -..||.+++++ +++
T Consensus 179 PdG~lFi~an~~-s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 179 PDGNLFIFANRG-SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCCEEEEEcCC-cEEEeCCCCeEEeeC
Confidence 899988887655 67789999976 444
No 65
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=74.97 E-value=71 Score=29.59 Aligned_cols=113 Identities=14% Similarity=0.120 Sum_probs=68.5
Q ss_pred eEEEEEECCCceeeee---cCCCCCCCCCcceEEEEeCCeEEEEEeCCCCcEEEEEEeeCCCCCceEEEEEEccCCCccc
Q 016367 231 LRIMSFDLAEEDFGEI---GLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASL 307 (390)
Q Consensus 231 ~~il~fD~~~e~~~~i---~lP~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~ 307 (390)
+.|..||+....+... .+++... ...-+..-+|+++++..+=..++.+|..+.. ..+-+.+.+|.. +|
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~G---PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~t-lP--- 237 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAG---PRHIVFHPNGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDT-LP--- 237 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCC---cceEEEcCCCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeecc-Cc---
Confidence 4777777775555433 3333332 2333445689998844432789999998864 234555556554 22
Q ss_pred ccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeee-CC---eEEEEeCCCCcEEEEEEe
Q 016367 308 RENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYA-NG---ALVSYNPENEELKDLVIF 364 (390)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~-~~---~l~~yd~~t~~~~~v~~~ 364 (390)
..+ ....+ ..-+.+..+|..+.... .. .+|..|..+++++-+...
T Consensus 238 -------~dF----~g~~~-~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 238 -------EDF----TGTNW-AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred -------ccc----CCCCc-eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 122 22333 56667778888666553 21 378889999998888653
No 66
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=74.39 E-value=81 Score=29.99 Aligned_cols=134 Identities=14% Similarity=0.152 Sum_probs=72.0
Q ss_pred eEEEEEeCCCC-cccccCCCCccc------C-CCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCce--eeeecCCC
Q 016367 181 DVEVLTVGIDH-TWRYLGPVPWRL------N-PGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEED--FGEIGLPD 250 (390)
Q Consensus 181 ~~~vyss~~~~-~W~~~~~~p~~~------~-~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~--~~~i~lP~ 250 (390)
.+..++..+|+ .|+.-...|... . ....++..+|.+|.....+ .+.++|..+.+ |+. +.+.
T Consensus 216 ~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g--------~l~ald~~tG~~~W~~-~~~~ 286 (394)
T PRK11138 216 RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG--------NLVALDLRSGQIVWKR-EYGS 286 (394)
T ss_pred EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC--------eEEEEECCCCCEEEee-cCCC
Confidence 34455666664 686432222111 0 1145788899999877665 89999998754 432 2221
Q ss_pred CCCCCCcceEEEEeCCeEEEEEeCCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEE
Q 016367 251 CGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQV 330 (390)
Q Consensus 251 ~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (390)
...+...+|.|++...+ . .+..++-...+..|.... ... . .. ..|
T Consensus 287 -------~~~~~~~~~~vy~~~~~--g--~l~ald~~tG~~~W~~~~-~~~--------------~--------~~-~sp 331 (394)
T PRK11138 287 -------VNDFAVDGGRIYLVDQN--D--RVYALDTRGGVELWSQSD-LLH--------------R--------LL-TAP 331 (394)
T ss_pred -------ccCcEEECCEEEEEcCC--C--eEEEEECCCCcEEEcccc-cCC--------------C--------cc-cCC
Confidence 11235567777775442 2 233343221244565321 010 0 01 222
Q ss_pred EEEeeCCceEeeeeCCeEEEEeCCCCcEEE
Q 016367 331 VCDWKNGEILLEYANGALVSYNPENEELKD 360 (390)
Q Consensus 331 ~~~~~~g~il~~~~~~~l~~yd~~t~~~~~ 360 (390)
+ + .+|.|++...+..++.+|.+|++...
T Consensus 332 ~-v-~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 332 V-L-YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred E-E-ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 2 2 25667777667779999999988654
No 67
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=73.23 E-value=6.9 Score=24.48 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=14.0
Q ss_pred cccEEEEcCCCcceecccCcc
Q 016367 116 FNPIIVCNPFTGSYLELAKAT 136 (390)
Q Consensus 116 ~~~~~V~NP~T~~~~~LP~~~ 136 (390)
...++++|+.|++|.++|+++
T Consensus 28 ~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp ---EEEEETTTTEEEE--SS-
T ss_pred cCCEEEEECCCCEEEECCCCC
Confidence 457999999999999997664
No 68
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=72.61 E-value=56 Score=30.81 Aligned_cols=112 Identities=13% Similarity=0.019 Sum_probs=66.3
Q ss_pred eEEECCcEEEEEeeccCCCCCceEEEEEECCCce--eeeecCC-CCCCCCCcceEEEEeCCeEEEEEeCCCCcEEEEEEe
Q 016367 209 EALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEED--FGEIGLP-DCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMK 285 (390)
Q Consensus 209 ~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~--~~~i~lP-~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~ 285 (390)
++..+|.+|.....+ .|.+||..+.+ |+.-..+ ... ...-+...+|+|++...+ . .++.++
T Consensus 64 ~~~~dg~v~~~~~~G--------~i~A~d~~~g~~~W~~~~~~~~~~----~~~~~~~~~G~i~~g~~~-g---~~y~ld 127 (370)
T COG1520 64 PADGDGTVYVGTRDG--------NIFALNPDTGLVKWSYPLLGAVAQ----LSGPILGSDGKIYVGSWD-G---KLYALD 127 (370)
T ss_pred cEeeCCeEEEecCCC--------cEEEEeCCCCcEEecccCcCccee----ccCceEEeCCeEEEeccc-c---eEEEEE
Confidence 589999999986665 89999998876 5444333 111 222333448888875554 3 788888
Q ss_pred eCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeeeCCeEEEEeCCCCcEEEE
Q 016367 286 EYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYANGALVSYNPENEELKDL 361 (390)
Q Consensus 286 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~~l~~yd~~t~~~~~v 361 (390)
....+..|.....-.. . + ..+ .+..++.+++...+..++..|.+|++.+..
T Consensus 128 ~~~G~~~W~~~~~~~~--------------~---------~-~~~-~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 128 ASTGTLVWSRNVGGSP--------------Y---------Y-ASP-PVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred CCCCcEEEEEecCCCe--------------E---------E-ecC-cEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 7322667776533200 0 0 111 222345455554556688888887776443
No 69
>PLN02772 guanylate kinase
Probab=70.46 E-value=36 Score=32.39 Aligned_cols=75 Identities=7% Similarity=0.034 Sum_probs=49.5
Q ss_pred CceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeeec----CCCCCCCCCcceEEEEeCCeEEEEEeCCCCcEEEE
Q 016367 207 ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIG----LPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIW 282 (390)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~----lP~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW 282 (390)
..+|..+..+|.++... ........+-+||..+.+|.... .|.... .+.....-+++|.+........=+||
T Consensus 28 ~tav~igdk~yv~GG~~-d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~---GhSa~v~~~~rilv~~~~~~~~~~~w 103 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNH-EGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK---GYSAVVLNKDRILVIKKGSAPDDSIW 103 (398)
T ss_pred ceeEEECCEEEEEcccC-CCccccceEEEEECCCCcEecccccCCCCCCCC---cceEEEECCceEEEEeCCCCCccceE
Confidence 67899999999988654 22112248999999999998763 233321 23344444678887443225567899
Q ss_pred EEe
Q 016367 283 IMK 285 (390)
Q Consensus 283 ~l~ 285 (390)
.|+
T Consensus 104 ~l~ 106 (398)
T PLN02772 104 FLE 106 (398)
T ss_pred EEE
Confidence 998
No 70
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.98 E-value=21 Score=33.05 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=58.8
Q ss_pred CeEEEEEeCCCC-cccccCCCCcccCCCCceEEECCcEEEEEeeccCCCC---CceEEEEEECCCceeeee--cCCCCCC
Q 016367 180 SDVEVLTVGIDH-TWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPG---PRLRIMSFDLAEEDFGEI--GLPDCGS 253 (390)
Q Consensus 180 ~~~~vyss~~~~-~W~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~---~~~~il~fD~~~e~~~~i--~lP~~~~ 253 (390)
..+.+.++...+ .|..++..|-....-...+.++|.||.....+...+. --..+..||+.+++|+++ ..|...
T Consensus 58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl- 136 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGL- 136 (381)
T ss_pred ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccccccc-
Confidence 356666666653 8999998776655445578999999999876643331 114688999999999998 556653
Q ss_pred CCCcceEEEEeCC-eEEE
Q 016367 254 LSVCNFHLVVLRG-CLSA 270 (390)
Q Consensus 254 ~~~~~~~L~~~~G-~L~~ 270 (390)
....-..+++ ++++
T Consensus 137 ---~G~~~~~~~~~~i~f 151 (381)
T COG3055 137 ---VGASTFSLNGTKIYF 151 (381)
T ss_pred ---ccceeEecCCceEEE
Confidence 2333344455 6665
No 71
>PF13013 F-box-like_2: F-box-like domain
Probab=65.80 E-value=5.2 Score=30.41 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHccCCccchhhhhhhhH
Q 016367 2 ENLPLDVALDILSRLPITALVRTKCVCR 29 (390)
Q Consensus 2 ~~LP~Dll~eIL~rLP~ksl~r~r~VcK 29 (390)
.+||+||+..|+..-....+...-..|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4799999999999999888877666665
No 72
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=64.38 E-value=1.2e+02 Score=28.17 Aligned_cols=219 Identities=14% Similarity=0.141 Sum_probs=110.2
Q ss_pred eEEEEeecCceEEeeecc--cccc--EEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEecccccccc
Q 016367 97 EYQVVGSCNGLLCVSDAL--YFNP--IIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLR 172 (390)
Q Consensus 97 ~~~~~~s~~GLl~~~~~~--~~~~--~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~ 172 (390)
.+..++..+.+|...... .... .+-+++-|++...+-..... . ...+.+.+++. ++|-++. .+
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~-g-~~p~~i~~~~~-g~~l~va-ny--------- 106 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG-G-SSPCHIAVDPD-GRFLYVA-NY--------- 106 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES-S-SCEEEEEECTT-SSEEEEE-ET---------
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC-C-CCcEEEEEecC-CCEEEEE-Ec---------
Confidence 344555556666555442 1233 33445655555544332211 1 12345667764 3454444 11
Q ss_pred CCCCCCCCeEEEEEeCCCCcccccC-------CCCcc--cCCC-CceEEE--CCcEEEEEeeccCCCCCceEEEEEECCC
Q 016367 173 DRGWPRKSDVEVLTVGIDHTWRYLG-------PVPWR--LNPG-ASEALL--NGSLHWVTMRYKNNPGPRLRIMSFDLAE 240 (390)
Q Consensus 173 ~~~~~~~~~~~vyss~~~~~W~~~~-------~~p~~--~~~~-~~~v~~--~G~lywl~~~~~~~~~~~~~il~fD~~~ 240 (390)
..-.+.+|.+.++.+=.... .-|.. .... ...+.+ +|...|...-+ ...|..|++..
T Consensus 107 -----~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------~D~v~~~~~~~ 175 (345)
T PF10282_consen 107 -----GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------ADRVYVYDIDD 175 (345)
T ss_dssp -----TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------TTEEEEEEE-T
T ss_pred -----cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------CCEEEEEEEeC
Confidence 13468888888742211110 00100 0000 112333 47766666554 24788888866
Q ss_pred ce--ee---eecCCCCCCCCCcceEEEE-eCCeEEE-EEeCCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCc
Q 016367 241 ED--FG---EIGLPDCGSLSVCNFHLVV-LRGCLSA-VHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARP 313 (390)
Q Consensus 241 e~--~~---~i~lP~~~~~~~~~~~L~~-~~G~L~~-~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~ 313 (390)
+. +. .+.+|.... -.++.. -+|+..+ +... ...+.++.+... +..+....++.. ++
T Consensus 176 ~~~~l~~~~~~~~~~G~G----PRh~~f~pdg~~~Yv~~e~-s~~v~v~~~~~~--~g~~~~~~~~~~-~~--------- 238 (345)
T PF10282_consen 176 DTGKLTPVDSIKVPPGSG----PRHLAFSPDGKYAYVVNEL-SNTVSVFDYDPS--DGSLTEIQTIST-LP--------- 238 (345)
T ss_dssp TS-TEEEEEEEECSTTSS----EEEEEE-TTSSEEEEEETT-TTEEEEEEEETT--TTEEEEEEEEES-CE---------
T ss_pred CCceEEEeeccccccCCC----CcEEEEcCCcCEEEEecCC-CCcEEEEeeccc--CCceeEEEEeee-cc---------
Confidence 55 43 346666653 233333 3565555 4444 788999888732 347888888776 11
Q ss_pred chhhhhccCCCCcceEEEEEeeCCceEeee-e-CCeEEEEeC--CCCcEEEEE
Q 016367 314 HLEMLKKSGLGRGSSQVVCDWKNGEILLEY-A-NGALVSYNP--ENEELKDLV 362 (390)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~il~~~-~-~~~l~~yd~--~t~~~~~v~ 362 (390)
... ..... ..-+.+..+|+.++.. + .+.+..|++ ++++++.+.
T Consensus 239 -~~~----~~~~~-~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 239 -EGF----TGENA-PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp -TTS----CSSSS-EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred -ccc----cccCC-ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence 111 11112 5566788888855544 3 456777776 667888884
No 73
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=63.04 E-value=1e+02 Score=26.85 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=46.4
Q ss_pred eEEE--CCcEEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCCCCCcceEEEEeCCeEEEEEeCCCCcEEEEEEee
Q 016367 209 EALL--NGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKE 286 (390)
Q Consensus 209 ~v~~--~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~ 286 (390)
+++. +|.|||..... ..|..+|+.+.+...+.+|.. ....+..-+|.|+++... .+.+. +
T Consensus 5 p~~d~~~g~l~~~D~~~-------~~i~~~~~~~~~~~~~~~~~~-----~G~~~~~~~g~l~v~~~~---~~~~~---d 66 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPG-------GRIYRVDPDTGEVEVIDLPGP-----NGMAFDRPDGRLYVADSG---GIAVV---D 66 (246)
T ss_dssp EEEETTTTEEEEEETTT-------TEEEEEETTTTEEEEEESSSE-----EEEEEECTTSEEEEEETT---CEEEE---E
T ss_pred eEEECCCCEEEEEEcCC-------CEEEEEECCCCeEEEEecCCC-----ceEEEEccCCEEEEEEcC---ceEEE---e
Confidence 4455 69999986543 389999999999998888772 222222246888886653 22222 3
Q ss_pred CCCCCceEEEEEEc
Q 016367 287 YKVRESWSKDYIIG 300 (390)
Q Consensus 287 ~~~~~~W~~~~~i~ 300 (390)
.. ..+++......
T Consensus 67 ~~-~g~~~~~~~~~ 79 (246)
T PF08450_consen 67 PD-TGKVTVLADLP 79 (246)
T ss_dssp TT-TTEEEEEEEEE
T ss_pred cC-CCcEEEEeecc
Confidence 22 44677666653
No 74
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=61.12 E-value=24 Score=19.56 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=19.1
Q ss_pred eCCceEeeeeCCeEEEEeCCCCcEEE
Q 016367 335 KNGEILLEYANGALVSYNPENEELKD 360 (390)
Q Consensus 335 ~~g~il~~~~~~~l~~yd~~t~~~~~ 360 (390)
.+|.+++...+..++.+|.++++...
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 34556666667889999999988654
No 75
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=58.96 E-value=1.7e+02 Score=29.21 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=44.1
Q ss_pred CceEEECCcEEEEEeeccCCCCCceEEEEEECCCc--eeeee-cCCCCCCC----CCcceEEEEeCCeEEEEEeCCCCcE
Q 016367 207 ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEE--DFGEI-GLPDCGSL----SVCNFHLVVLRGCLSAVHCLDDKGM 279 (390)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e--~~~~i-~lP~~~~~----~~~~~~L~~~~G~L~~~~~~~~~~~ 279 (390)
..+++.+|.+|.....+ .|.++|..+. .|+.- ..|..... .....-+...+|++++...+ .
T Consensus 63 stPvv~~g~vyv~s~~g--------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d-g--- 130 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS--------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD-A--- 130 (527)
T ss_pred cCCEEECCEEEEECCCC--------cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-C---
Confidence 45788999999866554 7999998764 44432 33322110 00112245567777774432 2
Q ss_pred EEEEEeeCCCCCceEEE
Q 016367 280 EIWIMKEYKVRESWSKD 296 (390)
Q Consensus 280 ~IW~l~~~~~~~~W~~~ 296 (390)
.+..|+-.-.+..|...
T Consensus 131 ~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKK 147 (527)
T ss_pred EEEEEECCCCCEEeecc
Confidence 46666643226678754
No 76
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=58.27 E-value=1.3e+02 Score=26.44 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=61.7
Q ss_pred CceEEeeeccccccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEE
Q 016367 105 NGLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEV 184 (390)
Q Consensus 105 ~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~v 184 (390)
+|--|+..+. .+.+-+|||..+..+.-=..+.. ...-.+..+|. =|+. ..+....+.+
T Consensus 28 dGnY~ltcGs-drtvrLWNp~rg~liktYsghG~--EVlD~~~s~Dn----skf~---------------s~GgDk~v~v 85 (307)
T KOG0316|consen 28 DGNYCLTCGS-DRTVRLWNPLRGALIKTYSGHGH--EVLDAALSSDN----SKFA---------------SCGGDKAVQV 85 (307)
T ss_pred CCCEEEEcCC-CceEEeecccccceeeeecCCCc--eeeeccccccc----cccc---------------cCCCCceEEE
Confidence 5556666654 67899999998876532111100 00011122221 1111 1133568999
Q ss_pred EEeCCCC---cccccCCCCccc-CCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCC
Q 016367 185 LTVGIDH---TWRYLGPVPWRL-NPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGS 253 (390)
Q Consensus 185 yss~~~~---~W~~~~~~p~~~-~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~ 253 (390)
++..||. .||-...--... .....+|.+.|.+ + ..+-++|..+..+..|+.=....
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgsf-----D--------~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSF-----D--------SSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcceEEEeccc-----c--------ceeEEEEcccCCCCccchhhhhc
Confidence 9999985 566543211111 1124566666655 1 27888888888888887655543
No 77
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=57.13 E-value=84 Score=32.57 Aligned_cols=103 Identities=15% Similarity=0.290 Sum_probs=62.0
Q ss_pred EEEEEECCCcee---eeecCCCCCCCCCcceEEEEeC--Ce-EEEEEeCCCCcEEEEEEeeC----CCCCceEEEEEEcc
Q 016367 232 RIMSFDLAEEDF---GEIGLPDCGSLSVCNFHLVVLR--GC-LSAVHCLDDKGMEIWIMKEY----KVRESWSKDYIIGT 301 (390)
Q Consensus 232 ~il~fD~~~e~~---~~i~lP~~~~~~~~~~~L~~~~--G~-L~~~~~~~~~~~~IW~l~~~----~~~~~W~~~~~i~~ 301 (390)
..=.|+....+| +.|..|.... ......++ -. -|+.... +..+.||++.++ .....|..+..=.+
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~----~vat~~~~~~rs~~~vta~~-dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy 507 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNA----FVATIFLNPTRSVRCVTASV-DGDFKIWVFTDDSNIYKKSSNWTCKAIGSY 507 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCce----eEEEEEecCcccceeEEecc-CCeEEEEEEecccccCcCccceEEeeeecc
Confidence 344566666666 3457787642 12222211 11 2333333 788999999654 33568987654323
Q ss_pred CCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeeeCCeEEEEeCCC-CcEEEE
Q 016367 302 YLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYANGALVSYNPEN-EELKDL 361 (390)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~~l~~yd~~t-~~~~~v 361 (390)
...+ ....++.++|.++....++.+-.||..+ +.++..
T Consensus 508 -------------~k~~---------i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~ 546 (792)
T KOG1963|consen 508 -------------HKTP---------ITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCT 546 (792)
T ss_pred -------------ccCc---------ccchhhcCCCcEEEEecCCEEEEecCCChhhhhcc
Confidence 1111 4455788889898888888899999999 554433
No 78
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=56.69 E-value=15 Score=21.90 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=18.7
Q ss_pred CceEEECCcEEEEEeeccCCCCCceEEEEEECCC
Q 016367 207 ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAE 240 (390)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~ 240 (390)
..+++.+|.+|....++ .+.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~dg--------~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG--------NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS--------EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC--------EEEEEeCCC
Confidence 45688899999888776 999999864
No 79
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=55.05 E-value=2.5e+02 Score=29.64 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=23.9
Q ss_pred CceEEECCcEEEEEeeccCCCCCceEEEEEECCCc--eeee
Q 016367 207 ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEE--DFGE 245 (390)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e--~~~~ 245 (390)
..++.++|.+|...... .++++|..|. .|+.
T Consensus 188 ~TPlvvgg~lYv~t~~~--------~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPHN--------KVIALDAATGKEKWKF 220 (764)
T ss_pred cCCEEECCEEEEECCCC--------eEEEEECCCCcEEEEE
Confidence 56899999999876655 8999998754 4543
No 80
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=54.84 E-value=2e+02 Score=27.47 Aligned_cols=121 Identities=16% Similarity=0.175 Sum_probs=61.7
Q ss_pred EEECCcEEEEEeeccCCCCCceEEEEEECCCce---eeeecCCCCCCCCCcceEEEEeCCeEEEEEeCCCCcEEEEEEee
Q 016367 210 ALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEED---FGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKE 286 (390)
Q Consensus 210 v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~---~~~i~lP~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~ 286 (390)
-..++.+|.++... .....|++.|+.+-. |..+-.|..... ....+...++.|.+.... ...-+|.++.-
T Consensus 284 ~~~~~~~yi~Tn~~----a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~--~l~~~~~~~~~Lvl~~~~-~~~~~l~v~~~ 356 (414)
T PF02897_consen 284 DHHGDRLYILTNDD----APNGRLVAVDLADPSPAEWWTVLIPEDEDV--SLEDVSLFKDYLVLSYRE-NGSSRLRVYDL 356 (414)
T ss_dssp EEETTEEEEEE-TT-----TT-EEEEEETTSTSGGGEEEEEE--SSSE--EEEEEEEETTEEEEEEEE-TTEEEEEEEET
T ss_pred EccCCEEEEeeCCC----CCCcEEEEecccccccccceeEEcCCCCce--eEEEEEEECCEEEEEEEE-CCccEEEEEEC
Confidence 35577788777643 223589999998765 453333322210 234455568888885554 33444444442
Q ss_pred CCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEE-eeCCceEeeee----CCeEEEEeCCCCcEEEE
Q 016367 287 YKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCD-WKNGEILLEYA----NGALVSYNPENEELKDL 361 (390)
Q Consensus 287 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~il~~~~----~~~l~~yd~~t~~~~~v 361 (390)
. ..|... .+++ .. .+. +..+.. ..+.++.+... ...++.||+++++++.+
T Consensus 357 ~---~~~~~~-~~~~-------------p~------~g~--v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 357 D---DGKESR-EIPL-------------PE------AGS--VSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp T----TEEEE-EEES-------------SS------SSE--EEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred C---CCcEEe-eecC-------------Cc------ceE--EeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 1 124333 3333 11 010 111111 12344666553 34699999999999876
Q ss_pred E
Q 016367 362 V 362 (390)
Q Consensus 362 ~ 362 (390)
.
T Consensus 412 k 412 (414)
T PF02897_consen 412 K 412 (414)
T ss_dssp E
T ss_pred E
Confidence 3
No 81
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=52.54 E-value=40 Score=25.49 Aligned_cols=40 Identities=10% Similarity=0.314 Sum_probs=29.7
Q ss_pred ccEEEEcCCCc-ceecccCccCCCCcceEEEEEEecCCCCeEEEEEE
Q 016367 117 NPIIVCNPFTG-SYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIV 162 (390)
Q Consensus 117 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 162 (390)
-.++++||.|+ .|+. ..+. ...+.+-+|+..+.|+||.+.
T Consensus 11 A~V~~yd~~tKk~WvP--s~~~----~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVFQIDPKTKKNWIP--ASKH----AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEEEECCCCcceeEe--CCCC----ceeEEEEecCCCcEEEEEEec
Confidence 46899999997 6753 3321 245678899999999999864
No 82
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=50.05 E-value=3.4e+02 Score=28.76 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=32.1
Q ss_pred CCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeC-CceEeeeeCCeEEEEeCC
Q 016367 276 DKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKN-GEILLEYANGALVSYNPE 354 (390)
Q Consensus 276 ~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~il~~~~~~~l~~yd~~ 354 (390)
+..+.||.+++..-...|..+..-.- .. . .+. +.-++..++ |.+++...++.+.+|+.+
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~--------------~~----~-s~i-~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNE--------------FI----L-SRI-CTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred CceEEEEEcccchhhhhcccCCcccc--------------cc----c-cce-eeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 67899999986432334444332111 10 0 111 222333333 556666666667777766
Q ss_pred CCcE
Q 016367 355 NEEL 358 (390)
Q Consensus 355 t~~~ 358 (390)
+...
T Consensus 219 ~we~ 222 (933)
T KOG1274|consen 219 GWEL 222 (933)
T ss_pred Ccee
Confidence 5443
No 83
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=49.98 E-value=32 Score=20.18 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=17.9
Q ss_pred ceEeeeeCCeEEEEeCCCCcEEEE
Q 016367 338 EILLEYANGALVSYNPENEELKDL 361 (390)
Q Consensus 338 ~il~~~~~~~l~~yd~~t~~~~~v 361 (390)
.|++...+..++.+|.+|++...-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEe
Confidence 355555567899999999987654
No 84
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=48.85 E-value=2e+02 Score=25.82 Aligned_cols=88 Identities=19% Similarity=0.307 Sum_probs=0.0
Q ss_pred CeEEEEEeCCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeee-
Q 016367 266 GCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYA- 344 (390)
Q Consensus 266 G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~- 344 (390)
|.+...... ...++||.+.+ .++|..+..++- +..+- ++.++..+.|+.+....
T Consensus 27 g~ilAscg~-Dk~vriw~~~~---~~s~~ck~vld~--------------------~hkrs-VRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 27 GVILASCGT-DKAVRIWSTSS---GDSWTCKTVLDD--------------------GHKRS-VRSVAWSPHGRYLASASF 81 (312)
T ss_pred ceEEEeecC-CceEEEEecCC---CCcEEEEEeccc--------------------cchhe-eeeeeecCCCcEEEEeec
Q ss_pred CCeEEEEeCCCCcEEEE-EEeCCCCceEEEeeecc
Q 016367 345 NGALVSYNPENEELKDL-VIFDPPKWFCSIVHVES 378 (390)
Q Consensus 345 ~~~l~~yd~~t~~~~~v-~~~~~~~~~~~~~y~~s 378 (390)
+.-+..|.-+.+.++.+ .+.|.+.--.++.+.+|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s 116 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS 116 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCC
No 85
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=48.72 E-value=2.3e+02 Score=26.38 Aligned_cols=171 Identities=14% Similarity=0.101 Sum_probs=86.4
Q ss_pred eEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCc--ccccCC--CCcccCCCCceEEECCc-EE
Q 016367 143 LAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHT--WRYLGP--VPWRLNPGASEALLNGS-LH 217 (390)
Q Consensus 143 ~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~--W~~~~~--~p~~~~~~~~~v~~~G~-ly 217 (390)
......++|.. +|-++.- . ..-.+.+|+...+ . ...... +|.+-.+..-.+.-+|. +|
T Consensus 145 h~H~v~~~pdg-~~v~v~d---l------------G~D~v~~~~~~~~-~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 145 HPHQVVFSPDG-RFVYVPD---L------------GADRVYVYDIDDD-TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAY 207 (345)
T ss_dssp CEEEEEE-TTS-SEEEEEE---T------------TTTEEEEEEE-TT-S-TEEEEEEEECSTTSSEEEEEE-TTSSEEE
T ss_pred cceeEEECCCC-CEEEEEe---c------------CCCEEEEEEEeCC-CceEEEeeccccccCCCCcEEEEcCCcCEEE
Confidence 35567788753 4444431 1 1347899999877 4 433221 12211111112222565 55
Q ss_pred EEEeeccCCCCCceEEEEEECC--Cceeeee----cCCCCCCCCCcceEEEEe-CCe-EEEEEeCCCCcEEEEEEeeCCC
Q 016367 218 WVTMRYKNNPGPRLRIMSFDLA--EEDFGEI----GLPDCGSLSVCNFHLVVL-RGC-LSAVHCLDDKGMEIWIMKEYKV 289 (390)
Q Consensus 218 wl~~~~~~~~~~~~~il~fD~~--~e~~~~i----~lP~~~~~~~~~~~L~~~-~G~-L~~~~~~~~~~~~IW~l~~~~~ 289 (390)
...... ..|.+|+.. +.+++.+ .+|...........+... +|+ |++.... ...|.++.++..
T Consensus 208 v~~e~s-------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-~~sI~vf~~d~~-- 277 (345)
T PF10282_consen 208 VVNELS-------NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-SNSISVFDLDPA-- 277 (345)
T ss_dssp EEETTT-------TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-TTEEEEEEECTT--
T ss_pred EecCCC-------CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-CCEEEEEEEecC--
Confidence 544332 256666665 6666554 344433221123444444 565 4444444 789999999643
Q ss_pred CCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeee--CCeEEE--EeCCCCcEEEEE
Q 016367 290 RESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYA--NGALVS--YNPENEELKDLV 362 (390)
Q Consensus 290 ~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~--~~~l~~--yd~~t~~~~~v~ 362 (390)
++.-.++..++. . +.. .+-+.+.++|+.++... .+.+.. .|.++++++.+.
T Consensus 278 ~g~l~~~~~~~~-------------~--------G~~-Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 278 TGTLTLVQTVPT-------------G--------GKF-PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTTEEEEEEEEE-------------S--------SSS-EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEEeC-------------C--------CCC-ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 234455555554 1 112 44556777888666543 344554 467899999885
No 86
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=48.71 E-value=1.5e+02 Score=28.40 Aligned_cols=58 Identities=22% Similarity=0.186 Sum_probs=35.8
Q ss_pred ecCceEEeeeccc---cccEEEEcCCCcceecccCccCC----C-CcceEEEEEEecCCCCeEEEE
Q 016367 103 SCNGLLCVSDALY---FNPIIVCNPFTGSYLELAKATQH----A-QEELAFGFGCNSSTMEYKVVR 160 (390)
Q Consensus 103 s~~GLl~~~~~~~---~~~~~V~NP~T~~~~~LP~~~~~----~-~~~~~~~~~~d~~~~~ykvv~ 160 (390)
--+.||++.-..+ .-+++|+|..|++..+|...... | +....+.=||.-.++.||++-
T Consensus 236 ~vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd 301 (448)
T PF12458_consen 236 RVGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFD 301 (448)
T ss_pred ecCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeec
Confidence 3355677765422 23799999999999999877321 1 222333345555677777765
No 87
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=48.59 E-value=52 Score=25.12 Aligned_cols=44 Identities=9% Similarity=0.081 Sum_probs=30.0
Q ss_pred ccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEE
Q 016367 117 NPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVF 163 (390)
Q Consensus 117 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~ 163 (390)
-.+++.||.|+.|..+ .... .....+.+.+++..+.|.|+....
T Consensus 9 A~Vm~~d~~tk~W~P~--~~~~-~~ls~V~~~~~~~~~~yrIvg~~~ 52 (111)
T cd01207 9 ASVMVYDDSNKKWVPA--GGGS-QGFSRVQIYHHPRNNTFRVVGRKL 52 (111)
T ss_pred EEeeEEcCCCCcEEcC--CCCC-CCcceEEEEEcCCCCEEEEEEeec
Confidence 4688999999997543 3211 112345677888889999998653
No 88
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=46.91 E-value=36 Score=24.79 Aligned_cols=17 Identities=35% Similarity=0.688 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCCcEEEE
Q 016367 345 NGALVSYNPENEELKDL 361 (390)
Q Consensus 345 ~~~l~~yd~~t~~~~~v 361 (390)
+++++.||+.|++.+.+
T Consensus 36 ~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVL 52 (89)
T ss_dssp -EEEEEEETTTTEEEEE
T ss_pred CcCEEEEECCCCeEEEe
Confidence 45799999999998877
No 89
>PF15408 PH_7: Pleckstrin homology domain
Probab=46.58 E-value=12 Score=26.71 Aligned_cols=25 Identities=20% Similarity=0.684 Sum_probs=20.8
Q ss_pred ccchhhhhhhhHhhhhhhcCCChhh
Q 016367 18 ITALVRTKCVCRTWQALAQDPRLPI 42 (390)
Q Consensus 18 ~ksl~r~r~VcK~W~~li~~~~F~~ 42 (390)
++.+...+-|||+|-....+|+|.-
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhhh
Confidence 4566777899999999999999853
No 90
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=45.40 E-value=64 Score=25.07 Aligned_cols=47 Identities=21% Similarity=0.157 Sum_probs=31.4
Q ss_pred CCceEeeee-----CCeEEEEeCCCCcEEEEEEe----CCCCceEEEeeeccccch
Q 016367 336 NGEILLEYA-----NGALVSYNPENEELKDLVIF----DPPKWFCSIVHVESLFLV 382 (390)
Q Consensus 336 ~g~il~~~~-----~~~l~~yd~~t~~~~~v~~~----~~~~~~~~~~y~~sL~~~ 382 (390)
+|.++.... ...++.||+++++++.+..+ .......-+.|..+|..+
T Consensus 5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v 60 (129)
T PF08268_consen 5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALV 60 (129)
T ss_pred CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEE
Confidence 566655543 35799999999999999774 112234556777777654
No 91
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=45.20 E-value=15 Score=33.88 Aligned_cols=36 Identities=25% Similarity=0.556 Sum_probs=30.7
Q ss_pred CCCcHHHHHHHHccCC--------ccchhhhhhhhHhhhhhhcC
Q 016367 2 ENLPLDVALDILSRLP--------ITALVRTKCVCRTWQALAQD 37 (390)
Q Consensus 2 ~~LP~Dll~eIL~rLP--------~ksl~r~r~VcK~W~~li~~ 37 (390)
+.||.++|.+|+.|.. -++++.+..||+.|+.+..+
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 4699999999999986 23688999999999998764
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=44.72 E-value=3e+02 Score=26.55 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=69.1
Q ss_pred eEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCCCCCcceEEEEeCCeEEE-EEeCCCCcEEEEEEeeC
Q 016367 209 EALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSA-VHCLDDKGMEIWIMKEY 287 (390)
Q Consensus 209 ~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~~-~~~~~~~~~~IW~l~~~ 287 (390)
.++=+|.++-.+..+ ..+=.||+.+.. ..-.+|.+.. .-..+.-.+..-++ +..+ +..+.+|-|...
T Consensus 354 ~fHpDgLifgtgt~d-------~~vkiwdlks~~-~~a~Fpght~---~vk~i~FsENGY~Lat~ad-d~~V~lwDLRKl 421 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPD-------GVVKIWDLKSQT-NVAKFPGHTG---PVKAISFSENGYWLATAAD-DGSVKLWDLRKL 421 (506)
T ss_pred eEcCCceEEeccCCC-------ceEEEEEcCCcc-ccccCCCCCC---ceeEEEeccCceEEEEEec-CCeEEEEEehhh
Confidence 344466665444332 367789998877 5557777643 23344444444555 4554 556999998743
Q ss_pred CCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeee-CCeEEEEeCCCCcEEEEE
Q 016367 288 KVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYA-NGALVSYNPENEELKDLV 362 (390)
Q Consensus 288 ~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~-~~~l~~yd~~t~~~~~v~ 362 (390)
. ...++.. .. .+- ...+.+...|..+.... +-+++.|+-+++.|.++.
T Consensus 422 ~------n~kt~~l-------------~~-------~~~-v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 422 K------NFKTIQL-------------DE-------KKE-VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred c------ccceeec-------------cc-------ccc-ceeEEEcCCCCeEEeecceeEEEEEecccccceeee
Confidence 2 2223333 11 111 55567777787666554 446888899999999983
No 93
>PLN00181 protein SPA1-RELATED; Provisional
Probab=44.12 E-value=4.1e+02 Score=28.07 Aligned_cols=183 Identities=7% Similarity=-0.009 Sum_probs=88.7
Q ss_pred cccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCcccc
Q 016367 116 FNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRY 195 (390)
Q Consensus 116 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~~ 195 (390)
...+.|||..|++....=... ......+.+++..+.+-+.+ . ..-.+.+|+.+++.....
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sg-s---------------~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEH----EKRVWSIDYSSADPTLLASG-S---------------DDGSVKLWSINQGVSIGT 613 (793)
T ss_pred CCeEEEEECCCCeEEEEecCC----CCCEEEEEEcCCCCCEEEEE-c---------------CCCEEEEEECCCCcEEEE
Confidence 578899998877643211111 11355777776544443332 1 124688888877622221
Q ss_pred cCCCCcccCCCCceEEE---CCcEEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCCCCCcceEEEEeCCeEEEEE
Q 016367 196 LGPVPWRLNPGASEALL---NGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVH 272 (390)
Q Consensus 196 ~~~~p~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~~~~ 272 (390)
+.. . .....+.+ +|.....+..+ ..|..+|+.+..-....+..+.. .-..+.-.++...+..
T Consensus 614 ~~~---~--~~v~~v~~~~~~g~~latgs~d-------g~I~iwD~~~~~~~~~~~~~h~~---~V~~v~f~~~~~lvs~ 678 (793)
T PLN00181 614 IKT---K--ANICCVQFPSESGRSLAFGSAD-------HKVYYYDLRNPKLPLCTMIGHSK---TVSYVRFVDSSTLVSS 678 (793)
T ss_pred Eec---C--CCeEEEEEeCCCCCEEEEEeCC-------CeEEEEECCCCCccceEecCCCC---CEEEEEEeCCCEEEEE
Confidence 111 0 00112222 34433333222 37889998764311111112211 1223333466655544
Q ss_pred eCCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeee-eCCeEEEE
Q 016367 273 CLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEY-ANGALVSY 351 (390)
Q Consensus 273 ~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~-~~~~l~~y 351 (390)
.. +..+.||-+........|..+..+.- .. .. ...+++..++.++... .++.+..|
T Consensus 679 s~-D~~ikiWd~~~~~~~~~~~~l~~~~g-------------h~--------~~-i~~v~~s~~~~~lasgs~D~~v~iw 735 (793)
T PLN00181 679 ST-DNTLKLWDLSMSISGINETPLHSFMG-------------HT--------NV-KNFVGLSVSDGYIATGSETNEVFVY 735 (793)
T ss_pred EC-CCEEEEEeCCCCccccCCcceEEEcC-------------CC--------CC-eeEEEEcCCCCEEEEEeCCCEEEEE
Confidence 44 67899999864321224555544432 11 11 3445565556555544 35668888
Q ss_pred eCCCC
Q 016367 352 NPENE 356 (390)
Q Consensus 352 d~~t~ 356 (390)
+..+.
T Consensus 736 ~~~~~ 740 (793)
T PLN00181 736 HKAFP 740 (793)
T ss_pred ECCCC
Confidence 87654
No 94
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=43.66 E-value=2.4e+02 Score=25.26 Aligned_cols=143 Identities=14% Similarity=0.102 Sum_probs=76.4
Q ss_pred CCCeEEEEEeCCCCcccccCCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCc-eeeeecCCCCCCCCC
Q 016367 178 RKSDVEVLTVGIDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEE-DFGEIGLPDCGSLSV 256 (390)
Q Consensus 178 ~~~~~~vyss~~~~~W~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e-~~~~i~lP~~~~~~~ 256 (390)
....+..|++.++ .=.....+|..... ..-..+++.+|-+.+.. .....||..+- ....++.|.
T Consensus 66 G~S~l~~~d~~tg-~~~~~~~l~~~~Fg-EGit~~~d~l~qLTWk~-------~~~f~yd~~tl~~~~~~~y~~------ 130 (264)
T PF05096_consen 66 GQSSLRKVDLETG-KVLQSVPLPPRYFG-EGITILGDKLYQLTWKE-------GTGFVYDPNTLKKIGTFPYPG------ 130 (264)
T ss_dssp TEEEEEEEETTTS-SEEEEEE-TTT--E-EEEEEETTEEEEEESSS-------SEEEEEETTTTEEEEEEE-SS------
T ss_pred CcEEEEEEECCCC-cEEEEEECCccccc-eeEEEECCEEEEEEecC-------CeEEEEccccceEEEEEecCC------
Confidence 3578999999999 54333334432211 44567899999999875 48899999753 333445553
Q ss_pred cceEEEEeCCeEEEEEeCCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeC
Q 016367 257 CNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKN 336 (390)
Q Consensus 257 ~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (390)
...-|+..+..|.+...+ =.|+.++ ......+.+|.... ...+ ... ..-+=.. +
T Consensus 131 EGWGLt~dg~~Li~SDGS----~~L~~~d----P~~f~~~~~i~V~~-----------~g~p----v~~--LNELE~i-~ 184 (264)
T PF05096_consen 131 EGWGLTSDGKRLIMSDGS----SRLYFLD----PETFKEVRTIQVTD-----------NGRP----VSN--LNELEYI-N 184 (264)
T ss_dssp S--EEEECSSCEEEE-SS----SEEEEE-----TTT-SEEEEEE-EE-----------TTEE---------EEEEEEE-T
T ss_pred cceEEEcCCCEEEEECCc----cceEEEC----CcccceEEEEEEEE-----------CCEE----CCC--cEeEEEE-c
Confidence 233444445556664432 3455555 22355666666510 0100 000 1112122 5
Q ss_pred CceEeeee-CCeEEEEeCCCCcEEEE
Q 016367 337 GEILLEYA-NGALVSYNPENEELKDL 361 (390)
Q Consensus 337 g~il~~~~-~~~l~~yd~~t~~~~~v 361 (390)
|.|+-... .+.++..|++|++...+
T Consensus 185 G~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 185 GKIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp TEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred CEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 66655443 56799999999998766
No 95
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=43.13 E-value=4.1e+02 Score=27.69 Aligned_cols=56 Identities=14% Similarity=0.025 Sum_probs=35.7
Q ss_pred eEEEEEeeCCceEeeeeC--CeEEEEeCCCCcEEEEEE--eCCCCceEEEeeeccccchh
Q 016367 328 SQVVCDWKNGEILLEYAN--GALVSYNPENEELKDLVI--FDPPKWFCSIVHVESLFLVE 383 (390)
Q Consensus 328 ~~~~~~~~~g~il~~~~~--~~l~~yd~~t~~~~~v~~--~~~~~~~~~~~y~~sL~~~~ 383 (390)
+.-+++...|+|++.... ..+++++++|+++..+-. .|.....+.-+-...|+|..
T Consensus 438 fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc
Confidence 555566677999988753 469999999999988732 23323333444444555443
No 96
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=41.19 E-value=2.5e+02 Score=24.66 Aligned_cols=188 Identities=11% Similarity=-0.014 Sum_probs=86.4
Q ss_pred cccEEEEcCCCcceec-ccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCccc
Q 016367 116 FNPIIVCNPFTGSYLE-LAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWR 194 (390)
Q Consensus 116 ~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~ 194 (390)
...+.++|+.+++... ++.... ...+.+++..+ +++.... ....+.+|+.+++ .=
T Consensus 52 ~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~~~~g~--~l~~~~~--------------~~~~l~~~d~~~~-~~- 107 (300)
T TIGR03866 52 SDTIQVIDLATGEVIGTLPSGPD------PELFALHPNGK--ILYIANE--------------DDNLVTVIDIETR-KV- 107 (300)
T ss_pred CCeEEEEECCCCcEEEeccCCCC------ccEEEECCCCC--EEEEEcC--------------CCCeEEEEECCCC-eE-
Confidence 4679999999887543 333211 12455666543 2222111 1236888888776 31
Q ss_pred ccCCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeee-ecCCCCCCCCCcceEEEEeCCeEEE-EE
Q 016367 195 YLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGE-IGLPDCGSLSVCNFHLVVLRGCLSA-VH 272 (390)
Q Consensus 195 ~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~~~L~~~~G~L~~-~~ 272 (390)
+...+.......-.+.-+|.+.+.+... ...+..+|..+.+... +..+... ... ...-+|+..+ ..
T Consensus 108 -~~~~~~~~~~~~~~~~~dg~~l~~~~~~------~~~~~~~d~~~~~~~~~~~~~~~~----~~~-~~s~dg~~l~~~~ 175 (300)
T TIGR03866 108 -LAEIPVGVEPEGMAVSPDGKIVVNTSET------TNMAHFIDTKTYEIVDNVLVDQRP----RFA-EFTADGKELWVSS 175 (300)
T ss_pred -EeEeeCCCCcceEEECCCCCEEEEEecC------CCeEEEEeCCCCeEEEEEEcCCCc----cEE-EECCCCCEEEEEc
Confidence 1111111111111223356665554432 1145667877654432 2222111 111 1223555443 33
Q ss_pred eCCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEee-e-eCCeEEE
Q 016367 273 CLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLE-Y-ANGALVS 350 (390)
Q Consensus 273 ~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~-~-~~~~l~~ 350 (390)
.. ...+.+|-++. .....++.... .... ..... ...+.+..+|+.++. . .++.+..
T Consensus 176 ~~-~~~v~i~d~~~------~~~~~~~~~~~-----------~~~~---~~~~~-~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 176 EI-GGTVSVIDVAT------RKVIKKITFEI-----------PGVH---PEAVQ-PVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CC-CCEEEEEEcCc------ceeeeeeeecc-----------cccc---cccCC-ccceEECCCCCEEEEEcCCCCeEEE
Confidence 33 66799998763 12233333210 0000 00000 122445667765433 2 3456899
Q ss_pred EeCCCCcEEEE
Q 016367 351 YNPENEELKDL 361 (390)
Q Consensus 351 yd~~t~~~~~v 361 (390)
||.++++....
T Consensus 234 ~d~~~~~~~~~ 244 (300)
T TIGR03866 234 VDAKTYEVLDY 244 (300)
T ss_pred EECCCCcEEEE
Confidence 99998876543
No 97
>PRK05137 tolB translocation protein TolB; Provisional
Probab=40.41 E-value=3.5e+02 Score=26.11 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=68.8
Q ss_pred cccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCcccc
Q 016367 116 FNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRY 195 (390)
Q Consensus 116 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~~ 195 (390)
...++++|+.|++...+...+. ......+.|.. +.-++... . .....+++++..++ .-+.
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g-----~~~~~~~SPDG-~~la~~~~--~-----------~g~~~Iy~~d~~~~-~~~~ 284 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPG-----MTFAPRFSPDG-RKVVMSLS--Q-----------GGNTDIYTMDLRSG-TTTR 284 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCC-----cccCcEECCCC-CEEEEEEe--c-----------CCCceEEEEECCCC-ceEE
Confidence 4689999999998877654322 12234455533 22222221 1 12356777788888 6665
Q ss_pred cCCCCcccCCCCceEEECCc-EEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCCCCCcceEEEEeCC-eEEEEEe
Q 016367 196 LGPVPWRLNPGASEALLNGS-LHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRG-CLSAVHC 273 (390)
Q Consensus 196 ~~~~p~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G-~L~~~~~ 273 (390)
+...+.. .......-+|. +++..... ....|..+|+.+.+...+....... .... ..-+| .|++...
T Consensus 285 Lt~~~~~--~~~~~~spDG~~i~f~s~~~-----g~~~Iy~~d~~g~~~~~lt~~~~~~---~~~~-~SpdG~~ia~~~~ 353 (435)
T PRK05137 285 LTDSPAI--DTSPSYSPDGSQIVFESDRS-----GSPQLYVMNADGSNPRRISFGGGRY---STPV-WSPRGDLIAFTKQ 353 (435)
T ss_pred ccCCCCc--cCceeEcCCCCEEEEEECCC-----CCCeEEEEECCCCCeEEeecCCCcc---cCeE-ECCCCCEEEEEEc
Confidence 5432211 11122333554 44333221 1136888888877666653221110 1122 22345 4555544
Q ss_pred CCCCcEEEEEEee
Q 016367 274 LDDKGMEIWIMKE 286 (390)
Q Consensus 274 ~~~~~~~IW~l~~ 286 (390)
. .....||+++-
T Consensus 354 ~-~~~~~i~~~d~ 365 (435)
T PRK05137 354 G-GGQFSIGVMKP 365 (435)
T ss_pred C-CCceEEEEEEC
Confidence 3 44567777663
No 98
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=37.54 E-value=3.2e+02 Score=24.93 Aligned_cols=205 Identities=9% Similarity=-0.022 Sum_probs=0.0
Q ss_pred ceEEeeeccccccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEE
Q 016367 106 GLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVL 185 (390)
Q Consensus 106 GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vy 185 (390)
|-.+.....+...+.+++-.|.....+........... .+.++|..+...+.. .....+.+|
T Consensus 1 ~~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~--~l~~spd~~~lyv~~----------------~~~~~i~~~ 62 (330)
T PRK11028 1 KQIVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQ--PMVISPDKRHLYVGV----------------RPEFRVLSY 62 (330)
T ss_pred CeEEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCc--cEEECCCCCEEEEEE----------------CCCCcEEEE
Q ss_pred EeC-CCCcccccCCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCC-----ceeeeecCCCCCCCCCcce
Q 016367 186 TVG-IDHTWRYLGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAE-----EDFGEIGLPDCGSLSVCNF 259 (390)
Q Consensus 186 ss~-~~~~W~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~-----e~~~~i~lP~~~~~~~~~~ 259 (390)
+.. ++ ++..+...+.......-.+.-+|...+.+... ...|.+||+.+ +....++..... ...
T Consensus 63 ~~~~~g-~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~~----~~~ 131 (330)
T PRK11028 63 RIADDG-ALTFAAESPLPGSPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQIIEGLEGC----HSA 131 (330)
T ss_pred EECCCC-ceEEeeeecCCCCceEEEECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCceeeccCCCcc----cEe
Q ss_pred EEEEeCCeEEEEEeCCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCce
Q 016367 260 HLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEI 339 (390)
Q Consensus 260 ~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 339 (390)
.+...+..|++.... ...+.||-++..+ .-.=.....+.. ..+.. .+-+.+.++|+.
T Consensus 132 ~~~p~g~~l~v~~~~-~~~v~v~d~~~~g-~l~~~~~~~~~~--------------------~~g~~-p~~~~~~pdg~~ 188 (330)
T PRK11028 132 NIDPDNRTLWVPCLK-EDRIRLFTLSDDG-HLVAQEPAEVTT--------------------VEGAG-PRHMVFHPNQQY 188 (330)
T ss_pred EeCCCCCEEEEeeCC-CCEEEEEEECCCC-cccccCCCceec--------------------CCCCC-CceEEECCCCCE
Q ss_pred Eeeee--CCeEEEEeCC--CCcEEEEE
Q 016367 340 LLEYA--NGALVSYNPE--NEELKDLV 362 (390)
Q Consensus 340 l~~~~--~~~l~~yd~~--t~~~~~v~ 362 (390)
++... .+.+..||.+ +++++.+.
T Consensus 189 lyv~~~~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 189 AYCVNELNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEecCCCEEEEEEEeCCCCCEEEEE
No 99
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.34 E-value=1.6e+02 Score=27.52 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=44.4
Q ss_pred CeEEEEEeCCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeee-
Q 016367 266 GCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYA- 344 (390)
Q Consensus 266 G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~- 344 (390)
|..+..... +.+|.+|-+.- . .-+.++. +.+.+ ++-+++...|+.++.+.
T Consensus 304 ~~~l~s~Sr-DktIk~wdv~t----g--~cL~tL~---------------------ghdnw-Vr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 304 GQVLGSGSR-DKTIKIWDVST----G--MCLFTLV---------------------GHDNW-VRGVAFSPGGKYILSCAD 354 (406)
T ss_pred ccEEEeecc-cceEEEEeccC----C--eEEEEEe---------------------cccce-eeeeEEcCCCeEEEEEec
Confidence 345555555 78899998872 2 1233333 23345 77788888888777665
Q ss_pred CCeEEEEeCCCCcEEEE
Q 016367 345 NGALVSYNPENEELKDL 361 (390)
Q Consensus 345 ~~~l~~yd~~t~~~~~v 361 (390)
++-+-.||+++++..+.
T Consensus 355 Dktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 355 DKTLRVWDLKNLQCMKT 371 (406)
T ss_pred CCcEEEEEeccceeeec
Confidence 55699999999886654
No 100
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=34.95 E-value=4.4e+02 Score=25.70 Aligned_cols=141 Identities=9% Similarity=0.012 Sum_probs=74.8
Q ss_pred CCeEEEEEeCCCCcccc-cCCCCcccCCCCceEEECCcEEEEEeeccCCCCCceEEEEEECCCcee-eee---cCCCCCC
Q 016367 179 KSDVEVLTVGIDHTWRY-LGPVPWRLNPGASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDF-GEI---GLPDCGS 253 (390)
Q Consensus 179 ~~~~~vyss~~~~~W~~-~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~-~~i---~lP~~~~ 253 (390)
..++.+|++.+. +=+. +....... ....+..+|.|.-.++.. ..+-.||..+... ..+ ..|.+
T Consensus 47 S~rvqly~~~~~-~~~k~~srFk~~v--~s~~fR~DG~LlaaGD~s-------G~V~vfD~k~r~iLR~~~ah~apv~-- 114 (487)
T KOG0310|consen 47 SVRVQLYSSVTR-SVRKTFSRFKDVV--YSVDFRSDGRLLAAGDES-------GHVKVFDMKSRVILRQLYAHQAPVH-- 114 (487)
T ss_pred ccEEEEEecchh-hhhhhHHhhccce--eEEEeecCCeEEEccCCc-------CcEEEeccccHHHHHHHhhccCcee--
Confidence 368999999997 3322 11110000 022345579998776653 3788999555211 122 33332
Q ss_pred CCCcceEEEEeCCeEEEEEeCCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEE
Q 016367 254 LSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCD 333 (390)
Q Consensus 254 ~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (390)
.......++.+.+...+ +....+|.+... . + +..+.- ...+ ++-..+
T Consensus 115 ----~~~f~~~d~t~l~s~sD-d~v~k~~d~s~a----~-v-~~~l~~---------------------htDY-VR~g~~ 161 (487)
T KOG0310|consen 115 ----VTKFSPQDNTMLVSGSD-DKVVKYWDLSTA----Y-V-QAELSG---------------------HTDY-VRCGDI 161 (487)
T ss_pred ----EEEecccCCeEEEecCC-CceEEEEEcCCc----E-E-EEEecC---------------------Ccce-eEeecc
Confidence 22334455666554444 889999999842 1 2 333332 1112 333334
Q ss_pred ee-CCceEeeee-CCeEEEEeCCCCcEEEEEEe
Q 016367 334 WK-NGEILLEYA-NGALVSYNPENEELKDLVIF 364 (390)
Q Consensus 334 ~~-~g~il~~~~-~~~l~~yd~~t~~~~~v~~~ 364 (390)
.. ++-|++... ++.+-.||.++..-+-+.+.
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln 194 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN 194 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCCceeEEec
Confidence 33 333666554 56789999998872222443
No 101
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=34.21 E-value=1.4e+02 Score=26.36 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred ceEEEEEe-eCCceEeeeeCCeEEEEeCCCCcEEEEEEeCCCCceEEEeeeccccchhhhhccCC
Q 016367 327 SSQVVCDW-KNGEILLEYANGALVSYNPENEELKDLVIFDPPKWFCSIVHVESLFLVEAILGIGA 390 (390)
Q Consensus 327 ~~~~~~~~-~~g~il~~~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~~~y~~sL~~~~~~~~~~~ 390 (390)
++..+.+. +++.|++...+..++..|++++++++ .+.|..++.+.++-.++-=.+-++.+=|+
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r-~~rGHtDYvH~vv~R~~~~qilsG~EDGt 179 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR-EYRGHTDYVHSVVGRNANGQILSGAEDGT 179 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE-EEcCCcceeeeeeecccCcceeecCCCcc
No 102
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=34.05 E-value=3.9e+02 Score=24.88 Aligned_cols=173 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred cccccceEEEEeecCceEEeeecccccc----EEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEecc
Q 016367 91 VNSIMAEYQVVGSCNGLLCVSDALYFNP----IIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFN 166 (390)
Q Consensus 91 ~~~~~~~~~~~~s~~GLl~~~~~~~~~~----~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~ 166 (390)
|.+..++.-+.||.+||+++.+...+.. +-|+|-.+- ...+|+. .+.||=+......
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS----------------I~~igw~--~~~ykrI~clTH~- 233 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS----------------IHLIGWL--SKKYKRIMCLTHM- 233 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce----------------eeeeeee--cCCcceEEEEEcc-
Q ss_pred ccccccCCCCCCCCeEEEEEeCCCC--cccccCCCCcccCCC-------CceEEECCcEEEEEeeccCCCCCceEEEEEE
Q 016367 167 TYRSLRDRGWPRKSDVEVLTVGIDH--TWRYLGPVPWRLNPG-------ASEALLNGSLHWVTMRYKNNPGPRLRIMSFD 237 (390)
Q Consensus 167 ~~~~~~~~~~~~~~~~~vyss~~~~--~W~~~~~~p~~~~~~-------~~~v~~~G~lywl~~~~~~~~~~~~~il~fD 237 (390)
..+.+|.++.++ .|-+.+......... -...+-++.-.|..... ......|+.+.
T Consensus 234 -------------Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~---~~n~~~~~~~~ 297 (376)
T KOG1188|consen 234 -------------ETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGT---DSNKGTIFPLV 297 (376)
T ss_pred -------------CceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEecc---ccCceeEEEee
Q ss_pred --CCCceeeeecCCCCCCCCCcceEEEEeCCeEEEEEeCCCCcEEEEEEeeC-CCCCceEEEEEE
Q 016367 238 --LAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEY-KVRESWSKDYII 299 (390)
Q Consensus 238 --~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~-~~~~~W~~~~~i 299 (390)
...+.-+.+..+...........+....+.+.+...+ ...+.+|.-+|. +..-+|.....|
T Consensus 298 ~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE-DG~l~~Wk~~da~e~~~s~~esl~i 361 (376)
T KOG1188|consen 298 DTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE-DGLLQAWKVEDATEINFSWTESLKI 361 (376)
T ss_pred ecccccccCccccccCCcHHHHHHHhhhcccceeeccCC-CceEEEEecCCcccccccccccccc
No 103
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=33.95 E-value=1.2e+02 Score=29.30 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=40.0
Q ss_pred CCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCc-eEeee-eCCeEEEEeC
Q 016367 276 DKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGE-ILLEY-ANGALVSYNP 353 (390)
Q Consensus 276 ~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-il~~~-~~~~l~~yd~ 353 (390)
+..++|..+++.- . .++..|.+ ...+ +.-..+..+|. .++.. +...++.||+
T Consensus 234 d~~lrifqvDGk~--N--~~lqS~~l-------------~~fP---------i~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 234 DGTLRIFQVDGKV--N--PKLQSIHL-------------EKFP---------IQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred CCcEEEEEecCcc--C--hhheeeee-------------ccCc---------cceeeecCCCceEEEecccceEEEEeec
Confidence 6678888887432 1 26677776 3332 33335666776 54444 3456999999
Q ss_pred CCCcEEEEE
Q 016367 354 ENEELKDLV 362 (390)
Q Consensus 354 ~t~~~~~v~ 362 (390)
++.++.++.
T Consensus 288 e~ak~~k~~ 296 (514)
T KOG2055|consen 288 ETAKVTKLK 296 (514)
T ss_pred ccccccccc
Confidence 999999994
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=31.71 E-value=4.1e+02 Score=24.37 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=27.1
Q ss_pred eEEEEEeeCCceEeee-eCCeEEEEeCCCCcEEEEEEeC
Q 016367 328 SQVVCDWKNGEILLEY-ANGALVSYNPENEELKDLVIFD 365 (390)
Q Consensus 328 ~~~~~~~~~g~il~~~-~~~~l~~yd~~t~~~~~v~~~~ 365 (390)
..-++..++|..++.. .++.+-+||+.+++...|....
T Consensus 75 vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd 113 (347)
T KOG0647|consen 75 VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHD 113 (347)
T ss_pred eEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecc
Confidence 3334566677655554 4677999999999999996643
No 105
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=31.69 E-value=4.1e+02 Score=24.42 Aligned_cols=49 Identities=24% Similarity=0.187 Sum_probs=35.2
Q ss_pred CcEEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCCCCCcceEEEEeCCeEEEEEe
Q 016367 214 GSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHC 273 (390)
Q Consensus 214 G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~~~~~ 273 (390)
+.+||..-.+ ..|..+|+.+..-+.+..|... ....+...+|.|..+..
T Consensus 37 ~~L~w~DI~~-------~~i~r~~~~~g~~~~~~~p~~~----~~~~~~d~~g~Lv~~~~ 85 (307)
T COG3386 37 GALLWVDILG-------GRIHRLDPETGKKRVFPSPGGF----SSGALIDAGGRLIACEH 85 (307)
T ss_pred CEEEEEeCCC-------CeEEEecCCcCceEEEECCCCc----ccceeecCCCeEEEEcc
Confidence 5678876554 4899999999999999999876 34455555566665544
No 106
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=31.61 E-value=5.5e+02 Score=26.57 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=36.6
Q ss_pred EEEEEECCCceeeeecCCCCCCCC-CcceEEEE-eCCeEEEEEeCCCCcEEEEEEeeCCCCCceEEEEEEc
Q 016367 232 RIMSFDLAEEDFGEIGLPDCGSLS-VCNFHLVV-LRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIG 300 (390)
Q Consensus 232 ~il~fD~~~e~~~~i~lP~~~~~~-~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~ 300 (390)
.|...|+.+.+.. +|.....+ .....++. .++...+.... ..-+++|.|+...--.+|.-.|.-|
T Consensus 41 ~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a~r-s~llrv~~L~tgk~irswKa~He~P 107 (775)
T KOG0319|consen 41 RVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTASR-SQLLRVWSLPTGKLIRSWKAIHEAP 107 (775)
T ss_pred eEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEeec-cceEEEEEcccchHhHhHhhccCCC
Confidence 6888999988776 44332221 12233333 33443333333 7789999998543344676655433
No 107
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=31.40 E-value=4.5e+02 Score=24.76 Aligned_cols=107 Identities=13% Similarity=-0.033 Sum_probs=61.2
Q ss_pred EEEEEECCCcee-eeecCCCCCCCCCcceEEEEeCC-eEEEEEe--------CCCCcEEEEEEeeCCCCCceEEEEEEcc
Q 016367 232 RIMSFDLAEEDF-GEIGLPDCGSLSVCNFHLVVLRG-CLSAVHC--------LDDKGMEIWIMKEYKVRESWSKDYIIGT 301 (390)
Q Consensus 232 ~il~fD~~~e~~-~~i~lP~~~~~~~~~~~L~~~~G-~L~~~~~--------~~~~~~~IW~l~~~~~~~~W~~~~~i~~ 301 (390)
.|.++|..+.+. ..|+.-... .. +..-+| .|+++.. .+...++||=.+. ...+.+|+.
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P-----~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t------~~~~~~i~~ 95 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLP-----NP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT------HLPIADIEL 95 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCC-----ce-eECCCCCEEEEEeccccccccCCCCCEEEEEECcc------CcEEeEEcc
Confidence 799999988665 445533322 22 233344 5666433 1267788877663 346667775
Q ss_pred CCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEee-e-e-CCeEEEEeCCCCcEE-EEEEeC
Q 016367 302 YLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLE-Y-A-NGALVSYNPENEELK-DLVIFD 365 (390)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~-~-~-~~~l~~yd~~t~~~~-~v~~~~ 365 (390)
.+-+.+ ..... ...+++..+|+.++. + . +..+-.+|+++++.. +|...+
T Consensus 96 -------------p~~p~~-~~~~~-~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 96 -------------PEGPRF-LVGTY-PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred -------------CCCchh-hccCc-cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence 111110 01212 445678888885554 4 3 567999999999874 465543
No 108
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=31.32 E-value=5.9e+02 Score=26.06 Aligned_cols=143 Identities=14% Similarity=0.177 Sum_probs=77.3
Q ss_pred CeEEEEEeCCCC--cccccCCCCcccCCC-CceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeee--cCCCCCCC
Q 016367 180 SDVEVLTVGIDH--TWRYLGPVPWRLNPG-ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEI--GLPDCGSL 254 (390)
Q Consensus 180 ~~~~vyss~~~~--~W~~~~~~p~~~~~~-~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i--~lP~~~~~ 254 (390)
.+..+|.+.-.+ .=+.++.+|...... .-....++..-.++... ...+..|+.++.++..+ .-|.....
T Consensus 403 ~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~------~~~le~~el~~ps~kel~~~~~~~~~~ 476 (691)
T KOG2048|consen 403 SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKN------IFSLEEFELETPSFKELKSIQSQAKCP 476 (691)
T ss_pred cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecc------cceeEEEEecCcchhhhhccccccCCC
Confidence 455566655542 112223344333222 22345566655555422 24788999999888776 22331211
Q ss_pred CCcceEEEEe-CC-eEEEEEeCCCCcEEEEEEeeCCCCCceEE-EEEEccCCCcccccCcCcchhhhhccCCCCcceEEE
Q 016367 255 SVCNFHLVVL-RG-CLSAVHCLDDKGMEIWIMKEYKVRESWSK-DYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVV 331 (390)
Q Consensus 255 ~~~~~~L~~~-~G-~L~~~~~~~~~~~~IW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (390)
..-.++++ +| -|++... ...+.+|-|+.- +..|.+ ...+. +..+
T Consensus 477 --~I~~l~~SsdG~yiaa~~t--~g~I~v~nl~~~--~~~~l~~rln~~---------------------------vTa~ 523 (691)
T KOG2048|consen 477 --SISRLVVSSDGNYIAAIST--RGQIFVYNLETL--ESHLLKVRLNID---------------------------VTAA 523 (691)
T ss_pred --cceeEEEcCCCCEEEEEec--cceEEEEEcccc--eeecchhccCcc---------------------------eeee
Confidence 33445544 34 4555443 668999999842 223333 11111 3333
Q ss_pred EEe--eCCceEeeeeCCeEEEEeCCCCcEEEE
Q 016367 332 CDW--KNGEILLEYANGALVSYNPENEELKDL 361 (390)
Q Consensus 332 ~~~--~~g~il~~~~~~~l~~yd~~t~~~~~v 361 (390)
++. ..+.+++...+++++-||.+.+++.+.
T Consensus 524 ~~~~~~~~~lvvats~nQv~efdi~~~~l~~w 555 (691)
T KOG2048|consen 524 AFSPFVRNRLVVATSNNQVFEFDIEARNLTRW 555 (691)
T ss_pred eccccccCcEEEEecCCeEEEEecchhhhhhh
Confidence 332 345688888899999999977665554
No 109
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=30.38 E-value=1.6e+02 Score=25.84 Aligned_cols=54 Identities=26% Similarity=0.298 Sum_probs=36.5
Q ss_pred cCceEEeeeccccccEEEEcCCCcceecc--cCccCCCCcceEEEEEEecCCCCeEEEE
Q 016367 104 CNGLLCVSDALYFNPIIVCNPFTGSYLEL--AKATQHAQEELAFGFGCNSSTMEYKVVR 160 (390)
Q Consensus 104 ~~GLl~~~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~d~~~~~ykvv~ 160 (390)
.+|.|..... ..++|..||.|+.-..+ .++... .....++|-|+|..++-+||.
T Consensus 37 a~G~LYgl~~--~g~lYtIn~~tG~aT~vg~s~~~~a-l~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 37 ANGQLYGLGS--TGRLYTINPATGAATPVGASPLTVA-LSGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred CCCCEEEEeC--CCcEEEEECCCCeEEEeeccccccc-ccCceEEEecCcccCcEEEEc
Confidence 3666655544 58999999999997666 322111 111367888999988888875
No 110
>PF13049 DUF3910: Protein of unknown function (DUF3910)
Probab=30.17 E-value=1.9e+02 Score=20.14 Aligned_cols=57 Identities=7% Similarity=0.110 Sum_probs=35.8
Q ss_pred eecccCcc----CCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCcccccC
Q 016367 129 YLELAKAT----QHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRYLG 197 (390)
Q Consensus 129 ~~~LP~~~----~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~~~~ 197 (390)
|+--|.+- ........+.|......++||++.+.... ...+++--|-..-| +=+..+
T Consensus 9 wigtpkpyiykddvtyda~~idfsl~~ddnryklivlk~e~-----------~~hyk~vqyg~kpg-sqkpfp 69 (93)
T PF13049_consen 9 WIGTPKPYIYKDDVTYDATSIDFSLENDDNRYKLIVLKHEE-----------NTHYKFVQYGIKPG-SQKPFP 69 (93)
T ss_pred eccCCCceEecccceeeeeEEEEEeccCCCeEEEEEEeccC-----------cceeEEEEeccCcC-CCCCcc
Confidence 66666651 12222345556666667899999987533 23467777888888 776654
No 111
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=29.62 E-value=5.5e+02 Score=25.21 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=33.2
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCCcceEEEEe-CCeEEEEEeCCCCcEEEEEEeeC
Q 016367 231 LRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVL-RGCLSAVHCLDDKGMEIWIMKEY 287 (390)
Q Consensus 231 ~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~ 287 (390)
..+.+||..+.+...+.-+-.. ...+.+. +|+-.++.. .+++||+.+-+
T Consensus 382 D~l~iyd~~~~e~kr~e~~lg~-----I~av~vs~dGK~~vvaN---dr~el~vidid 431 (668)
T COG4946 382 DKLGIYDKDGGEVKRIEKDLGN-----IEAVKVSPDGKKVVVAN---DRFELWVIDID 431 (668)
T ss_pred ceEEEEecCCceEEEeeCCccc-----eEEEEEcCCCcEEEEEc---CceEEEEEEec
Confidence 4899999999998888766552 3344443 566444433 37999998843
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.31 E-value=4.6e+02 Score=24.21 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=39.4
Q ss_pred ceEEECCcEEEEEeeccCCCCCceEEEEEECCCce-eeeecCCCCCCCCCcceEEEEeCCeE---EEEEeCCCCcEEEEE
Q 016367 208 SEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEED-FGEIGLPDCGSLSVCNFHLVVLRGCL---SAVHCLDDKGMEIWI 283 (390)
Q Consensus 208 ~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~-~~~i~lP~~~~~~~~~~~L~~~~G~L---~~~~~~~~~~~~IW~ 283 (390)
.+|.++|-.---+.. ...|-.||+.+.. ...+--|.. ...-.-..+.+ .+....++..|.||.
T Consensus 47 tavAVs~~~~aSGss-------DetI~IYDm~k~~qlg~ll~Hag------sitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 47 TALAVSGPYVASGSS-------DETIHIYDMRKRKQLGILLSHAG------SITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred eEEEecceeEeccCC-------CCcEEEEeccchhhhcceecccc------ceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 466676654322222 2478889986543 233322222 11222222333 342222378999998
Q ss_pred EeeCCCCCceEEEEEEcc
Q 016367 284 MKEYKVRESWSKDYIIGT 301 (390)
Q Consensus 284 l~~~~~~~~W~~~~~i~~ 301 (390)
.+ .|..+.++..
T Consensus 114 ~~------~W~~~~slK~ 125 (362)
T KOG0294|consen 114 VG------SWELLKSLKA 125 (362)
T ss_pred cC------CeEEeeeecc
Confidence 76 5988888765
No 113
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=29.03 E-value=44 Score=29.75 Aligned_cols=35 Identities=31% Similarity=0.428 Sum_probs=27.1
Q ss_pred CCCcHHHHHHHHccCC-ccchhhhhhhhHhhhhhhc
Q 016367 2 ENLPLDVALDILSRLP-ITALVRTKCVCRTWQALAQ 36 (390)
Q Consensus 2 ~~LP~Dll~eIL~rLP-~ksl~r~r~VcK~W~~li~ 36 (390)
.+||.+++.+||.||| -.+|....-|-..-..++.
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHH
Confidence 5799999999999999 7788877776554444444
No 114
>PRK04792 tolB translocation protein TolB; Provisional
Probab=28.73 E-value=5.5e+02 Score=24.94 Aligned_cols=139 Identities=9% Similarity=0.005 Sum_probs=72.2
Q ss_pred cccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCcccc
Q 016367 116 FNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWRY 195 (390)
Q Consensus 116 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~~ 195 (390)
...++++|..|++...+...+.. .....+.|..+ +-++... . .....++++++.++ ..+.
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~-----~~~~~wSPDG~-~La~~~~--~-----------~g~~~Iy~~dl~tg-~~~~ 300 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI-----NGAPRFSPDGK-KLALVLS--K-----------DGQPEIYVVDIATK-ALTR 300 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC-----cCCeeECCCCC-EEEEEEe--C-----------CCCeEEEEEECCCC-CeEE
Confidence 45799999999887666533211 11345565433 3222221 1 12356888888888 7776
Q ss_pred cCCCCcccCCCCceEEECCc-EEEEEeeccCCCCCceEEEEEECCCceeeeecCCCCCCCCCcceEEEEeCCe-EEEEEe
Q 016367 196 LGPVPWRLNPGASEALLNGS-LHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGC-LSAVHC 273 (390)
Q Consensus 196 ~~~~p~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~-L~~~~~ 273 (390)
+..... ........-+|. +++..... ....|..+|+.+.+...+....... .... ..-+|+ |++...
T Consensus 301 lt~~~~--~~~~p~wSpDG~~I~f~s~~~-----g~~~Iy~~dl~~g~~~~Lt~~g~~~---~~~~-~SpDG~~l~~~~~ 369 (448)
T PRK04792 301 ITRHRA--IDTEPSWHPDGKSLIFTSERG-----GKPQIYRVNLASGKVSRLTFEGEQN---LGGS-ITPDGRSMIMVNR 369 (448)
T ss_pred CccCCC--CccceEECCCCCEEEEEECCC-----CCceEEEEECCCCCEEEEecCCCCC---cCee-ECCCCCEEEEEEe
Confidence 543211 111122233564 44433221 1247889999887776653222111 1122 223554 445544
Q ss_pred CCCCcEEEEEEee
Q 016367 274 LDDKGMEIWIMKE 286 (390)
Q Consensus 274 ~~~~~~~IW~l~~ 286 (390)
. .....||+++-
T Consensus 370 ~-~g~~~I~~~dl 381 (448)
T PRK04792 370 T-NGKFNIARQDL 381 (448)
T ss_pred c-CCceEEEEEEC
Confidence 4 56788998873
No 115
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=28.56 E-value=70 Score=21.44 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=13.4
Q ss_pred eEEEEeCCCCcEEEE
Q 016367 347 ALVSYNPENEELKDL 361 (390)
Q Consensus 347 ~l~~yd~~t~~~~~v 361 (390)
++|.||++|++++-+
T Consensus 42 KIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 42 KIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCeEEEE
Confidence 699999999998766
No 116
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=27.58 E-value=96 Score=24.12 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=21.6
Q ss_pred eEeeeeCCeEEEEeCCCCcEEEEEEeCCC
Q 016367 339 ILLEYANGALVSYNPENEELKDLVIFDPP 367 (390)
Q Consensus 339 il~~~~~~~l~~yd~~t~~~~~v~~~~~~ 367 (390)
|+.....-.++.||..+++|++.++.|..
T Consensus 22 Il~~a~~v~vY~f~~~~~~W~K~~iEG~L 50 (122)
T PF06058_consen 22 ILDTASHVVVYKFDHETNEWEKTDIEGTL 50 (122)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred HHhhCCeEEEEeecCCCCcEeecCcEeeE
Confidence 44444555688888999999999887653
No 117
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=26.77 E-value=6.2e+02 Score=24.88 Aligned_cols=139 Identities=14% Similarity=0.043 Sum_probs=79.2
Q ss_pred eEEEEEeCCCCcccccC-CCCcccCC----C-------CceEEECCcEEEEEeeccCCCCCceEEEEEECCCceeeeecC
Q 016367 181 DVEVLTVGIDHTWRYLG-PVPWRLNP----G-------ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFGEIGL 248 (390)
Q Consensus 181 ~~~vyss~~~~~W~~~~-~~p~~~~~----~-------~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~~i~l 248 (390)
.+++|+..++ +-+.++ .+|..... + ..-..++|-++-+..++ ....+++...-. +++
T Consensus 288 dIylydP~td-~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG--------kaFi~~~~~~~~--iqv 356 (668)
T COG4946 288 DIYLYDPETD-SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG--------KAFIMRPWDGYS--IQV 356 (668)
T ss_pred cEEEeCCCcC-cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC--------cEEEECCCCCee--EEc
Confidence 5777888887 666654 23433111 0 22456788888887776 555555544322 333
Q ss_pred CCCCCCCCcceEEEEeCCeEEEEEeCCCCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcce
Q 016367 249 PDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSS 328 (390)
Q Consensus 249 P~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (390)
+..... ...++.+....+.+...+ +..+.|.-.+.. ++.+|.. ..+. +
T Consensus 357 ~~~~~V--rY~r~~~~~e~~vigt~d-gD~l~iyd~~~~-------e~kr~e~--------------------~lg~--I 404 (668)
T COG4946 357 GKKGGV--RYRRIQVDPEGDVIGTND-GDKLGIYDKDGG-------EVKRIEK--------------------DLGN--I 404 (668)
T ss_pred CCCCce--EEEEEccCCcceEEeccC-CceEEEEecCCc-------eEEEeeC--------------------Cccc--e
Confidence 333221 445555555544444443 667777655521 3334443 1111 4
Q ss_pred EEEEEeeCCc-eEeeeeCCeEEEEeCCCCcEEEEE
Q 016367 329 QVVCDWKNGE-ILLEYANGALVSYNPENEELKDLV 362 (390)
Q Consensus 329 ~~~~~~~~g~-il~~~~~~~l~~yd~~t~~~~~v~ 362 (390)
-.+.+..+|. +++.+...++..+|.++++.+.++
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 4457777887 555555668999999999998884
No 118
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=26.43 E-value=5.8e+02 Score=24.39 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=31.0
Q ss_pred ceEEEEEECCCceeeee-cCCCCCCCCCcceEEEEeCCeEEE-EEeCCCCcE--EEEEEeeCCCCCceEE
Q 016367 230 RLRIMSFDLAEEDFGEI-GLPDCGSLSVCNFHLVVLRGCLSA-VHCLDDKGM--EIWIMKEYKVRESWSK 295 (390)
Q Consensus 230 ~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~-~~~~~~~~~--~IW~l~~~~~~~~W~~ 295 (390)
.+.|+..|+.+.+...+ .-.... ......-.+..|.+ |+--.-..+ +||.++.++ ...|..
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wl----gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg-~~~~~v 231 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWL----GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG-SNVKKV 231 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-E----EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EES
T ss_pred CceEEEEECCCCceeEEEecCccc----cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC-Ccceee
Confidence 46899999999888776 322221 12222233555555 765433333 789999765 334443
No 119
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=25.90 E-value=6.2e+02 Score=25.87 Aligned_cols=59 Identities=19% Similarity=0.355 Sum_probs=40.8
Q ss_pred CCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeeeeCCeEEEEeCCC
Q 016367 276 DKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYANGALVSYNPEN 355 (390)
Q Consensus 276 ~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~~l~~yd~~t 355 (390)
...++||-+.. .|-+...|.. .. ++. ...++..++++++=..-++.+.-||+-+
T Consensus 46 ~g~IEiwN~~~-----~w~~~~vi~g-------------~~-------drs-IE~L~W~e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 46 DGNIEIWNLSN-----NWFLEPVIHG-------------PE-------DRS-IESLAWAEGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred CCcEEEEccCC-----CceeeEEEec-------------CC-------CCc-eeeEEEccCCeEEeecCCceEEEEeccc
Confidence 77999999984 5988888876 11 222 5556666666666666677788888887
Q ss_pred CcEEE
Q 016367 356 EELKD 360 (390)
Q Consensus 356 ~~~~~ 360 (390)
.+-+.
T Consensus 100 lk~~~ 104 (691)
T KOG2048|consen 100 LKQKY 104 (691)
T ss_pred CceeE
Confidence 66543
No 120
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=24.60 E-value=2.9e+02 Score=26.46 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCeEEEEEeCCCCcEEEEEEeeCCCCCceEEEEE-EccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeee
Q 016367 265 RGCLSAVHCLDDKGMEIWIMKEYKVRESWSKDYI-IGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEY 343 (390)
Q Consensus 265 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~ 343 (390)
+|++.++.-. ...+.+|-++| |.++.+ .+. ..+.+ ..--||...++-++..
T Consensus 406 d~k~~LvnL~-~qei~LWDl~e------~~lv~kY~Gh--------------------kq~~f-iIrSCFgg~~~~fiaS 457 (519)
T KOG0293|consen 406 DGKLALVNLQ-DQEIHLWDLEE------NKLVRKYFGH--------------------KQGHF-IIRSCFGGGNDKFIAS 457 (519)
T ss_pred CCcEEEEEcc-cCeeEEeecch------hhHHHHhhcc--------------------cccce-EEEeccCCCCcceEEe
Q ss_pred e--CCeEEEEeCCCCcEEEEEEeCCCCceEEEeeec
Q 016367 344 A--NGALVSYNPENEELKDLVIFDPPKWFCSIVHVE 377 (390)
Q Consensus 344 ~--~~~l~~yd~~t~~~~~v~~~~~~~~~~~~~y~~ 377 (390)
. +.+++.++.+++++-. .+.|......++.+.|
T Consensus 458 GSED~kvyIWhr~sgkll~-~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISGKLLA-VLSGHSKTVNCVSWNP 492 (519)
T ss_pred cCCCceEEEEEccCCceeE-eecCCcceeeEEecCC
No 121
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=23.91 E-value=2.5e+02 Score=21.15 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=27.5
Q ss_pred ccEEEEcCCCcc-eecccCccCCCCcceEEEEEEecCCCCeEEEEEE
Q 016367 117 NPIIVCNPFTGS-YLELAKATQHAQEELAFGFGCNSSTMEYKVVRIV 162 (390)
Q Consensus 117 ~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 162 (390)
-+++..+|-+++ |... .....+.+..|...+.|.|..+.
T Consensus 16 A~v~~~~p~~~~~W~~~-------~~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV-------KGTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES-------SSEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC-------CeEEEEEEEEECCCCEEEEEEEE
Confidence 468899999988 8764 11245567778777778777655
No 122
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=23.45 E-value=5.5e+02 Score=23.08 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=62.0
Q ss_pred ECCcEEEEEeeccCCCCCceEEEEEECCCceee-eecCCCCCCCCCcceEEEEeCCeEEEEEeCCCCcEEEEEEeeCCCC
Q 016367 212 LNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFG-EIGLPDCGSLSVCNFHLVVLRGCLSAVHCLDDKGMEIWIMKEYKVR 290 (390)
Q Consensus 212 ~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~ 290 (390)
.+|.+|=-+... .+-.|-.+|+.+.+.. ..++|... +.--++..+++|+..... ....-++-.+
T Consensus 54 ~~g~LyESTG~y-----G~S~l~~~d~~tg~~~~~~~l~~~~----FgEGit~~~d~l~qLTWk-~~~~f~yd~~----- 118 (264)
T PF05096_consen 54 DDGTLYESTGLY-----GQSSLRKVDLETGKVLQSVPLPPRY----FGEGITILGDKLYQLTWK-EGTGFVYDPN----- 118 (264)
T ss_dssp ETTEEEEEECST-----TEEEEEEEETTTSSEEEEEE-TTT------EEEEEEETTEEEEEESS-SSEEEEEETT-----
T ss_pred CCCEEEEeCCCC-----CcEEEEEEECCCCcEEEEEECCccc----cceeEEEECCEEEEEEec-CCeEEEEccc-----
Confidence 456776443322 2348999999998764 66999876 345667778888886665 4444443332
Q ss_pred CceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCc-eEeeeeCCeEEEEeCCCCcE-EEEE
Q 016367 291 ESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGE-ILLEYANGALVSYNPENEEL-KDLV 362 (390)
Q Consensus 291 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-il~~~~~~~l~~yd~~t~~~-~~v~ 362 (390)
...++.++.+ . +.+ + |+..+|+ +++.....+++..|+++-+. ++|.
T Consensus 119 -tl~~~~~~~y-------------~------~EG---W---GLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 119 -TLKKIGTFPY-------------P------GEG---W---GLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp -TTEEEEEEE--------------S------SS--------EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred -cceEEEEEec-------------C------Ccc---e---EEEcCCCEEEEECCccceEEECCcccceEEEEE
Confidence 3556666665 1 111 2 3445555 45555567899999988644 3443
No 123
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=23.32 E-value=2.6e+02 Score=24.75 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=50.0
Q ss_pred EEEEEECCCceeeeecCCCCCCCCCcceEEEEeCCeEEEEEeC--CCCcEEEEEEeeCCCCCceEEEEEEccCCCccccc
Q 016367 232 RIMSFDLAEEDFGEIGLPDCGSLSVCNFHLVVLRGCLSAVHCL--DDKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRE 309 (390)
Q Consensus 232 ~il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~~~~~~--~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 309 (390)
.-..||+.+.+++.+..+...... ....-.+|+|...+.. ....+++..-..+.....|...... +
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCS---gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~-m-------- 114 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCS---GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND-M-------- 114 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCccc---CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc-c--------
Confidence 567899999999999887655432 1222346887774332 2445665544332224468765321 3
Q ss_pred CcCcchhhhhccCCCCcceEEEEEeeCCceEeeee
Q 016367 310 NARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEYA 344 (390)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~ 344 (390)
...++ +-......+|+++++..
T Consensus 115 ------------~~~RW-YpT~~~L~DG~vlIvGG 136 (243)
T PF07250_consen 115 ------------QSGRW-YPTATTLPDGRVLIVGG 136 (243)
T ss_pred ------------cCCCc-cccceECCCCCEEEEeC
Confidence 12223 44445567788777764
No 124
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=22.94 E-value=5.3e+02 Score=25.43 Aligned_cols=80 Identities=10% Similarity=-0.056 Sum_probs=48.0
Q ss_pred eEEEEEeCCCC-cccccCCC-C----cccCCC-CceEEECCcEEEEEeeccCCCCCceEEEEEECCCceee-eecCCCCC
Q 016367 181 DVEVLTVGIDH-TWRYLGPV-P----WRLNPG-ASEALLNGSLHWVTMRYKNNPGPRLRIMSFDLAEEDFG-EIGLPDCG 252 (390)
Q Consensus 181 ~~~vyss~~~~-~W~~~~~~-p----~~~~~~-~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~ 252 (390)
.+..++..+|+ .|+.-... . ...... ...+..+|.+|.-..++ .+.+||..+.+.. ..++|...
T Consensus 367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG--------~l~ald~~tG~~lW~~~~~~~~ 438 (488)
T cd00216 367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADG--------YFRAFDATTGKELWKFRTPSGI 438 (488)
T ss_pred EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCC--------eEEEEECCCCceeeEEECCCCc
Confidence 46667777776 88764320 0 000111 23456777888766655 8999999765443 24776554
Q ss_pred CCCCcceEEEEeCCeEEEE
Q 016367 253 SLSVCNFHLVVLRGCLSAV 271 (390)
Q Consensus 253 ~~~~~~~~L~~~~G~L~~~ 271 (390)
. ....+.+.+|++++.
T Consensus 439 ~---a~P~~~~~~g~~yv~ 454 (488)
T cd00216 439 Q---ATPMTYEVNGKQYVG 454 (488)
T ss_pred e---EcCEEEEeCCEEEEE
Confidence 3 234445779999993
No 125
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.60 E-value=7.8e+02 Score=25.61 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=62.4
Q ss_pred ecCceEEeeeccccccEEEEcCCCcceecccCccCCCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeE
Q 016367 103 SCNGLLCVSDALYFNPIIVCNPFTGSYLELAKATQHAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDV 182 (390)
Q Consensus 103 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~ 182 (390)
|-|++||=..- +.++-+|.|-++++..+=.-. ..+...+|+|..++|-+-.-. .-++
T Consensus 378 SKn~fLLSSSM--DKTVRLWh~~~~~CL~~F~Hn-----dfVTcVaFnPvDDryFiSGSL----------------D~Kv 434 (712)
T KOG0283|consen 378 SKNNFLLSSSM--DKTVRLWHPGRKECLKVFSHN-----DFVTCVAFNPVDDRYFISGSL----------------DGKV 434 (712)
T ss_pred ccCCeeEeccc--cccEEeecCCCcceeeEEecC-----CeeEEEEecccCCCcEeeccc----------------ccce
Confidence 66888876655 688999999999887543222 245678899999999876522 2356
Q ss_pred EEEEeCCCC--cccccCCCCcccCCC--CceE---EECCcEEEEEeec
Q 016367 183 EVLTVGIDH--TWRYLGPVPWRLNPG--ASEA---LLNGSLHWVTMRY 223 (390)
Q Consensus 183 ~vyss~~~~--~W~~~~~~p~~~~~~--~~~v---~~~G~lywl~~~~ 223 (390)
.+.+..... -|..+..+-...+.. ..++ .++|.++++...+
T Consensus 435 RiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 435 RLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred EEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccC
Confidence 666666654 787766543222211 2222 5578777766544
No 126
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=21.19 E-value=1.4e+02 Score=29.30 Aligned_cols=116 Identities=9% Similarity=0.020 Sum_probs=63.3
Q ss_pred EcCCCcceecccCccC-------CCCcceEEEEEEecCCCCeEEEEEEEeccccccccCCCCCCCCeEEEEEeCCCCccc
Q 016367 122 CNPFTGSYLELAKATQ-------HAQEELAFGFGCNSSTMEYKVVRIVFNFNTYRSLRDRGWPRKSDVEVLTVGIDHTWR 194 (390)
Q Consensus 122 ~NP~T~~~~~LP~~~~-------~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~vyss~~~~~W~ 194 (390)
=-|.|-.|-.+|+... .+.......+.+++.++.-.+.. ..+ +...-..+++|+.+.+ .|.
T Consensus 234 q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYG--GWd---------G~~~l~DFW~Y~v~e~-~W~ 301 (723)
T KOG2437|consen 234 QQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYG--GWD---------GTQDLADFWAYSVKEN-QWT 301 (723)
T ss_pred cccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEec--Ccc---------cchhHHHHHhhcCCcc-eeE
Confidence 3466777887776631 12222344566666544322221 111 2233457899999999 999
Q ss_pred ccCC---CCcccCCCCceEEEC--CcEEEEEeec----cCCCCCceEEEEEECCCceeeeecCCC
Q 016367 195 YLGP---VPWRLNPGASEALLN--GSLHWVTMRY----KNNPGPRLRIMSFDLAEEDFGEIGLPD 250 (390)
Q Consensus 195 ~~~~---~p~~~~~~~~~v~~~--G~lywl~~~~----~~~~~~~~~il~fD~~~e~~~~i~lP~ 250 (390)
.+.. .|....+ ..-|..- -++|.++..- +.....+--+-.||.++.+|..+..-.
T Consensus 302 ~iN~~t~~PG~RsC-HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt 365 (723)
T KOG2437|consen 302 CINRDTEGPGARSC-HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDT 365 (723)
T ss_pred EeecCCCCCcchhh-hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccc
Confidence 8753 2322211 2222222 2566655322 122223346899999999999985543
No 127
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=21.12 E-value=3.4e+02 Score=26.71 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=40.3
Q ss_pred CCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCceEeee--eCCeEEEEeC
Q 016367 276 DKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGEILLEY--ANGALVSYNP 353 (390)
Q Consensus 276 ~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~--~~~~l~~yd~ 353 (390)
...+.+|-.+.-.....|.++|.-+- .+ +|+....+.++.. -++++..||.
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~-------------~g--------------icfspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPC-------------RG--------------ICFSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCc-------------Cc--------------ceecCCccceEEEecccceEEEeec
Confidence 78999998886544568888888664 22 3666655544443 3678999999
Q ss_pred CCCcEEE
Q 016367 354 ENEELKD 360 (390)
Q Consensus 354 ~t~~~~~ 360 (390)
..++...
T Consensus 239 ~s~~s~~ 245 (673)
T KOG4378|consen 239 RSQASTD 245 (673)
T ss_pred ccccccc
Confidence 9887643
No 128
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=21.06 E-value=7e+02 Score=23.48 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=68.5
Q ss_pred EECCcEEEEEeeccCCCCCceEEEEEECCCce------eeeecC---CCCCCCCCcceEEEE--eCCeEEE-EEeCC---
Q 016367 211 LLNGSLHWVTMRYKNNPGPRLRIMSFDLAEED------FGEIGL---PDCGSLSVCNFHLVV--LRGCLSA-VHCLD--- 275 (390)
Q Consensus 211 ~~~G~lywl~~~~~~~~~~~~~il~fD~~~e~------~~~i~l---P~~~~~~~~~~~L~~--~~G~L~~-~~~~~--- 275 (390)
-.+|..+|...++ .|..+|+++.. |..+.. +.......... +.. -++.|++ .+...
T Consensus 203 ~~dg~~~~vs~eG--------~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~-ia~~~dg~~lyV~~~~~~~~t 273 (352)
T TIGR02658 203 NKSGRLVWPTYTG--------KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ-VAYHRARDRIYLLADQRAKWT 273 (352)
T ss_pred cCCCcEEEEecCC--------eEEEEecCCCcceecceeeeccccccccccCCCccee-EEEcCCCCEEEEEecCCcccc
Confidence 3379999999887 89999975542 333211 11111111112 222 2456776 32111
Q ss_pred --CCcEEEEEEeeCCCCCceEEEEEEccCCCcccccCcCcchhhhhccCCCCcceEEEEEeeCCc-eEeeee--CCeEEE
Q 016367 276 --DKGMEIWIMKEYKVRESWSKDYIIGTYLPASLRENARPHLEMLKKSGLGRGSSQVVCDWKNGE-ILLEYA--NGALVS 350 (390)
Q Consensus 276 --~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-il~~~~--~~~l~~ 350 (390)
...=+||+++ ..++..+.+|.. +.. ...+.+..+|+ .++... .+.+..
T Consensus 274 hk~~~~~V~ViD----~~t~kvi~~i~v--------------------G~~---~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 274 HKTASRFLFVVD----AKTGKRLRKIEL--------------------GHE---IDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred ccCCCCEEEEEE----CCCCeEEEEEeC--------------------CCc---eeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 2233899998 457888888887 221 55567888888 666543 355999
Q ss_pred EeCCCCcE-EEE
Q 016367 351 YNPENEEL-KDL 361 (390)
Q Consensus 351 yd~~t~~~-~~v 361 (390)
+|..+.+. +.+
T Consensus 327 iD~~t~k~i~~i 338 (352)
T TIGR02658 327 FDAETGKELSSV 338 (352)
T ss_pred EECcCCeEEeee
Confidence 99999854 444
Done!