Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>016368
MDQSTSNRSKIINDNNNNSTSDHGTQNETILLLLPGLPNHLADRCLSSLPPALLFSVCHS
WRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQ
NPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGP
QLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR
FSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE
ELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVL
ASPARAWLVDPPRGFQVVAVHVLPRMCKQD

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  016368
        (390 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2197540 - symbol:KUF1 "KAR-UP F-box 1" species...   684  2.4e-67   1


>TAIR|locus:2197540 [details] [associations]
            symbol:KUF1 "KAR-UP F-box 1" species:3702 "Arabidopsis
            thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0080167 "response to karrikin"
            evidence=IEP] PROSITE:PS50181 UniPathway:UPA00143 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0080167 GO:GO:0016567
            Gene3D:2.130.10.80 InterPro:IPR015916 EMBL:AC007654 EMBL:AK118467
            EMBL:BT005351 IPI:IPI00528105 RefSeq:NP_174420.1 UniGene:At.40363
            ProteinModelPortal:Q8GX29 SMR:Q8GX29 IntAct:Q8GX29 STRING:Q8GX29
            PRIDE:Q8GX29 DNASU:840024 EnsemblPlants:AT1G31350.1 GeneID:840024
            KEGG:ath:AT1G31350 TAIR:At1g31350 eggNOG:NOG294098
            HOGENOM:HOG000242069 InParanoid:Q8GX29 OMA:LLHAVCR PhylomeDB:Q8GX29
            ProtClustDB:CLSN2682379 Genevestigator:Q8GX29 Uniprot:Q8GX29
        Length = 395

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 150/351 (42%), Positives = 204/351 (58%)

Query:    45 CLSSLP-PALLFSVCHSWRRLLYSPYFPPFFSLYALLFXXXXXXXXXXXXXXXXXXMEFF 103
             CLS +  P+LL +VC  WRRLLYSP FP F SLYAL                    + F 
Sbjct:    47 CLSLVHRPSLLSAVCTRWRRLLYSPEFPSFPSLYALFVDSTSDTGRVNPS------VRFM 100

Query:   104 CFDPISSTWNXXXXXXXXX-XXXXXYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPA 162
             CF+P+SS W                YRHPSF+S  LP+Q +     L+LIA +     PA
Sbjct:   101 CFNPVSSKWYPLPPPPPDPPLHRILYRHPSFISFNLPIQCVSAAGKLILIAGSNQQLSPA 160

Query:   163 LASPLAFNPQSNTWFFGPQLSIPRRWCAMXXXXXXXXXXXXXXXHYRGDVARSMKKWDL- 221
             ++ PL F+P S++W  GP++  PRRWCA                 +   VA+S++K DL 
Sbjct:   161 ISHPLIFDPISSSWSSGPRIGSPRRWCATGACDGAIYIASGISSQFSSTVAKSVEKLDLT 220

Query:   222 KSDRED--WKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWK 279
             + +R +  + WEK   ++D RFSREA++AVG++  L MVN+KG+  K+GAIY+V  D W+
Sbjct:   221 EQNRNNHRFNWEKLRDMRDLRFSREAIDAVGYRRKLLMVNVKGDAVKEGAIYDVVKDDWE 280

Query:   280 EMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVI--ELAE--LKGAE 335
              MPE M  GW GP A+ M EE LY V+E +G + KYD +   W EV+  E  E  LKGA 
Sbjct:   281 PMPEEMLVGWRGPVAA-MEEEILYSVDERRGTVRKYDDEKREWREVVVVEGGEEMLKGAT 339

Query:   336 KITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPRM 386
             ++TA  G++C V  +G +I+VVDV A PA+ W V+ P G + V+VHVLPRM
Sbjct:   340 QVTADSGKLCVVTGDG-KIVVVDVAAEPAKIWNVEIPDGLEPVSVHVLPRM 389


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.447    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      390       315   0.00082  116 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  268 KB (2139 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.13u 0.11s 23.24t   Elapsed:  00:00:01
  Total cpu time:  23.13u 0.11s 23.24t   Elapsed:  00:00:01
  Start:  Sat May 11 03:11:31 2013   End:  Sat May 11 03:11:32 2013

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