BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016368
         (390 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NN3|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii R173a Mutant
 pdb|3NN3|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii R173a Mutant
 pdb|3NN3|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii R173a Mutant
 pdb|3NN3|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii R173a Mutant
 pdb|3NN3|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii R173a Mutant
          Length = 241

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)

Query: 298 NEEELYVVNEGKGRLSKYDADHDWWD-----EVIELAELKG 333
           + E+L   +   G  + +  DHDWWD      VI +AE+KG
Sbjct: 5   DREKLLTESGVYGTFATFQMDHDWWDLPGESRVISVAEVKG 45


>pdb|3NN4|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii R173k Mutant
 pdb|3NN4|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii R173k Mutant
 pdb|3NN4|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii R173k Mutant
 pdb|3NN4|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii R173k Mutant
 pdb|3NN4|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii R173k Mutant
          Length = 241

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)

Query: 298 NEEELYVVNEGKGRLSKYDADHDWWD-----EVIELAELKG 333
           + E+L   +   G  + +  DHDWWD      VI +AE+KG
Sbjct: 5   DREKLLTESGVYGTFATFQMDHDWWDLPGESRVISVAEVKG 45


>pdb|3NN1|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii In Complex With Imidazole
 pdb|3NN1|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii In Complex With Imidazole
 pdb|3NN1|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii In Complex With Imidazole
 pdb|3NN1|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii In Complex With Imidazole
 pdb|3NN1|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii In Complex With Imidazole
 pdb|3NN2|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii In Complex With Cyanide
 pdb|3NN2|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii In Complex With Cyanide
 pdb|3NN2|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii In Complex With Cyanide
 pdb|3NN2|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii In Complex With Cyanide
 pdb|3NN2|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
           Defluvii In Complex With Cyanide
          Length = 241

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)

Query: 298 NEEELYVVNEGKGRLSKYDADHDWWD-----EVIELAELKG 333
           + E+L   +   G  + +  DHDWWD      VI +AE+KG
Sbjct: 5   DREKLLTESGVYGTFATFQMDHDWWDLPGESRVISVAEVKG 45


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,291,671
Number of Sequences: 62578
Number of extensions: 394327
Number of successful extensions: 824
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 824
Number of HSP's gapped (non-prelim): 23
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)