Query 016368
Match_columns 390
No_of_seqs 228 out of 2805
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 06:13:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 8.6E-38 1.9E-42 307.1 32.8 296 34-370 228-553 (571)
2 PHA02713 hypothetical protein; 100.0 1.3E-37 2.9E-42 307.0 27.9 241 101-372 273-542 (557)
3 PHA03098 kelch-like protein; P 100.0 1.5E-32 3.4E-37 272.8 27.9 237 101-369 265-517 (534)
4 PLN02153 epithiospecifier prot 100.0 5.5E-32 1.2E-36 253.6 28.8 232 108-368 5-289 (341)
5 KOG4441 Proteins containing BT 100.0 1.7E-32 3.7E-37 269.7 25.0 245 58-340 310-568 (571)
6 PHA02790 Kelch-like protein; P 100.0 6.8E-32 1.5E-36 262.8 26.3 205 142-369 267-476 (480)
7 PLN02153 epithiospecifier prot 100.0 5E-31 1.1E-35 247.1 29.1 243 100-360 50-339 (341)
8 PLN02193 nitrile-specifier pro 100.0 1.7E-30 3.6E-35 252.5 31.6 242 101-368 138-415 (470)
9 TIGR03548 mutarot_permut cycli 100.0 8.8E-31 1.9E-35 243.7 28.2 222 101-350 40-312 (323)
10 PHA02713 hypothetical protein; 100.0 2.6E-30 5.7E-35 255.2 27.3 197 163-373 271-501 (557)
11 TIGR03547 muta_rot_YjhT mutatr 100.0 1.1E-29 2.4E-34 238.8 27.4 228 100-350 29-330 (346)
12 PLN02193 nitrile-specifier pro 100.0 5.1E-29 1.1E-33 242.1 28.6 241 100-361 193-469 (470)
13 PRK14131 N-acetylneuraminic ac 100.0 3.9E-29 8.5E-34 236.9 26.7 239 101-362 51-370 (376)
14 PHA02790 Kelch-like protein; P 100.0 2.6E-29 5.7E-34 244.7 25.1 187 100-326 287-478 (480)
15 PHA03098 kelch-like protein; P 100.0 6.5E-29 1.4E-33 246.8 26.9 207 100-334 311-527 (534)
16 TIGR03547 muta_rot_YjhT mutatr 100.0 4.8E-28 1E-32 227.7 27.9 216 141-374 12-311 (346)
17 TIGR03548 mutarot_permut cycli 100.0 5E-28 1.1E-32 225.3 27.0 214 141-369 8-285 (323)
18 KOG4693 Uncharacterized conser 100.0 1E-28 2.3E-33 208.6 20.0 244 97-349 41-310 (392)
19 KOG4693 Uncharacterized conser 100.0 3.3E-27 7.1E-32 199.5 17.9 225 141-375 18-288 (392)
20 PRK14131 N-acetylneuraminic ac 100.0 3.7E-26 7.9E-31 216.7 27.3 225 111-368 18-325 (376)
21 KOG0379 Kelch repeat-containin 99.9 8E-22 1.7E-26 191.4 24.1 219 141-369 65-307 (482)
22 KOG0379 Kelch repeat-containin 99.9 1.2E-19 2.7E-24 176.1 23.0 209 101-329 89-312 (482)
23 KOG1230 Protein containing rep 99.8 4.7E-20 1E-24 165.1 17.2 215 146-368 78-345 (521)
24 KOG4152 Host cell transcriptio 99.8 9.8E-20 2.1E-24 166.9 19.0 273 60-362 18-365 (830)
25 KOG1230 Protein containing rep 99.8 7.5E-20 1.6E-24 163.8 17.6 265 32-325 31-347 (521)
26 KOG4152 Host cell transcriptio 99.7 5.8E-17 1.3E-21 148.9 16.2 198 141-348 37-271 (830)
27 COG3055 Uncharacterized protei 99.6 3.4E-14 7.3E-19 126.1 19.3 228 99-350 57-358 (381)
28 COG3055 Uncharacterized protei 99.4 1.5E-11 3.3E-16 109.5 19.3 201 164-377 58-342 (381)
29 TIGR01640 F_box_assoc_1 F-box 99.2 7.5E-09 1.6E-13 91.6 21.6 200 145-362 3-230 (230)
30 PF13964 Kelch_6: Kelch motif 99.1 1.5E-10 3.3E-15 75.9 6.2 50 185-240 1-50 (50)
31 PF01344 Kelch_1: Kelch motif; 99.0 1.2E-09 2.6E-14 70.6 5.2 47 185-237 1-47 (47)
32 KOG2437 Muskelin [Signal trans 98.9 7.7E-10 1.7E-14 102.4 4.8 174 171-352 236-458 (723)
33 PF13964 Kelch_6: Kelch motif 98.8 7.1E-09 1.5E-13 67.9 5.4 45 141-186 6-50 (50)
34 PLN03215 ascorbic acid mannose 98.8 5.3E-06 1.2E-10 76.9 26.1 134 223-373 189-359 (373)
35 KOG0281 Beta-TrCP (transducin 98.8 3.9E-08 8.5E-13 87.2 11.5 278 34-361 75-389 (499)
36 PF07646 Kelch_2: Kelch motif; 98.8 1.2E-08 2.7E-13 66.3 6.1 49 185-237 1-49 (49)
37 PF13418 Kelch_4: Galactose ox 98.7 2.2E-08 4.8E-13 65.2 4.4 47 185-237 1-48 (49)
38 PF13415 Kelch_3: Galactose ox 98.6 7E-08 1.5E-12 62.8 4.9 48 147-194 2-49 (49)
39 KOG2437 Muskelin [Signal trans 98.6 3.7E-08 7.9E-13 91.5 3.4 189 108-310 237-458 (723)
40 PF12937 F-box-like: F-box-lik 98.5 6.2E-08 1.3E-12 62.4 2.8 36 34-69 1-39 (47)
41 TIGR01640 F_box_assoc_1 F-box 98.5 2.4E-05 5.2E-10 69.2 20.1 203 100-320 14-230 (230)
42 PF01344 Kelch_1: Kelch motif; 98.5 1.7E-07 3.8E-12 60.3 4.1 41 288-329 1-47 (47)
43 PF13415 Kelch_3: Galactose ox 98.5 4E-07 8.7E-12 59.2 5.6 48 195-250 1-48 (49)
44 smart00612 Kelch Kelch domain. 98.5 3.3E-07 7.1E-12 58.9 4.8 47 197-253 1-47 (47)
45 smart00612 Kelch Kelch domain. 98.4 3.8E-07 8.2E-12 58.6 4.9 47 148-196 1-47 (47)
46 PF07893 DUF1668: Protein of u 98.3 0.0013 2.9E-08 61.5 26.9 141 141-294 70-226 (342)
47 smart00256 FBOX A Receptor for 98.3 7.2E-07 1.6E-11 55.5 3.2 35 37-71 1-38 (41)
48 PF13854 Kelch_5: Kelch motif 98.3 3E-06 6.6E-11 52.9 5.6 42 182-224 1-42 (42)
49 PF07646 Kelch_2: Kelch motif; 98.2 2.8E-06 6E-11 55.1 5.2 43 141-183 6-49 (49)
50 PF07250 Glyoxal_oxid_N: Glyox 98.2 2.5E-05 5.4E-10 68.5 12.3 139 215-362 47-199 (243)
51 PF13418 Kelch_4: Galactose ox 98.2 1.7E-06 3.7E-11 56.2 3.6 41 288-329 1-48 (49)
52 PLN02772 guanylate kinase 98.1 1.9E-05 4.1E-10 73.6 10.7 86 184-275 23-109 (398)
53 PF00646 F-box: F-box domain; 98.1 6E-07 1.3E-11 58.1 0.5 36 34-69 3-41 (48)
54 PLN02772 guanylate kinase 98.1 1.6E-05 3.4E-10 74.2 9.7 75 287-362 23-110 (398)
55 PF07250 Glyoxal_oxid_N: Glyox 98.1 5.2E-05 1.1E-09 66.5 12.3 154 99-287 45-210 (243)
56 PRK11138 outer membrane biogen 97.9 0.015 3.2E-07 55.9 25.5 181 164-371 170-363 (394)
57 PRK11138 outer membrane biogen 97.9 0.011 2.4E-07 56.7 24.3 165 164-359 215-393 (394)
58 PF13360 PQQ_2: PQQ-like domai 97.8 0.017 3.7E-07 50.8 23.8 190 144-368 33-237 (238)
59 TIGR03300 assembly_YfgL outer 97.7 0.031 6.7E-07 53.2 24.0 163 164-357 200-376 (377)
60 KOG0274 Cdc4 and related F-box 97.6 0.011 2.4E-07 58.5 20.9 288 30-362 104-402 (537)
61 PF13360 PQQ_2: PQQ-like domai 97.6 0.018 3.9E-07 50.7 20.5 179 165-370 4-200 (238)
62 TIGR03300 assembly_YfgL outer 97.4 0.046 1E-06 52.0 21.7 189 145-369 63-267 (377)
63 PF13854 Kelch_5: Kelch motif 97.4 0.00053 1.2E-08 42.6 5.0 34 285-319 1-41 (42)
64 PF05096 Glu_cyclase_2: Glutam 97.3 0.04 8.6E-07 48.8 17.5 156 190-368 49-211 (264)
65 PF07893 DUF1668: Protein of u 97.2 0.056 1.2E-06 50.7 18.9 120 194-331 75-222 (342)
66 KOG0310 Conserved WD40 repeat- 97.0 0.048 1E-06 51.4 15.9 263 34-357 35-306 (487)
67 COG4257 Vgb Streptogramin lyas 97.0 0.18 4E-06 44.5 18.1 162 168-347 172-334 (353)
68 PF08450 SGL: SMP-30/Gluconola 96.9 0.054 1.2E-06 48.2 15.4 179 162-362 20-215 (246)
69 KOG0310 Conserved WD40 repeat- 96.8 0.056 1.2E-06 50.9 14.7 177 164-362 48-227 (487)
70 PF03178 CPSF_A: CPSF A subuni 96.8 0.079 1.7E-06 49.2 16.2 137 214-360 62-202 (321)
71 TIGR03866 PQQ_ABC_repeats PQQ- 96.8 0.35 7.5E-06 43.7 20.0 172 164-362 11-189 (300)
72 KOG2055 WD40 repeat protein [G 96.7 0.063 1.4E-06 50.4 14.0 151 195-363 224-377 (514)
73 PF08450 SGL: SMP-30/Gluconola 96.6 0.11 2.5E-06 46.1 15.4 206 100-348 22-244 (246)
74 TIGR03866 PQQ_ABC_repeats PQQ- 96.5 0.57 1.2E-05 42.3 23.4 174 164-362 53-239 (300)
75 PLN02919 haloacid dehalogenase 96.4 1.3 2.7E-05 48.2 23.7 153 195-362 694-890 (1057)
76 KOG2120 SCF ubiquitin ligase, 96.4 0.0035 7.5E-08 55.9 3.7 38 32-69 96-136 (419)
77 PF05096 Glu_cyclase_2: Glutam 96.3 0.092 2E-06 46.6 12.4 111 246-362 48-159 (264)
78 cd00200 WD40 WD40 domain, foun 96.2 0.75 1.6E-05 40.4 20.0 173 164-362 31-209 (289)
79 KOG0646 WD40 repeat protein [G 96.0 0.62 1.3E-05 44.0 16.3 195 142-362 87-309 (476)
80 PRK11028 6-phosphogluconolacto 96.0 1.4 3E-05 41.0 20.0 179 164-361 12-206 (330)
81 KOG2055 WD40 repeat protein [G 95.9 0.49 1.1E-05 44.6 15.2 183 148-361 226-418 (514)
82 cd00200 WD40 WD40 domain, foun 95.8 1.2 2.5E-05 39.2 22.2 173 164-362 73-251 (289)
83 PF10282 Lactonase: Lactonase, 95.7 1.8 3.9E-05 40.6 20.6 234 97-361 12-276 (345)
84 KOG0281 Beta-TrCP (transducin 95.7 0.27 5.8E-06 44.7 12.4 109 245-362 322-430 (499)
85 PRK11028 6-phosphogluconolacto 95.7 1.8 3.8E-05 40.3 24.9 195 146-362 45-260 (330)
86 TIGR02800 propeller_TolB tol-p 95.7 2.1 4.5E-05 41.2 27.3 145 164-327 214-363 (417)
87 KOG0296 Angio-associated migra 95.5 1.5 3.3E-05 40.3 16.4 145 195-362 75-222 (399)
88 PRK04792 tolB translocation pr 95.5 2.7 5.9E-05 41.1 22.7 185 99-324 241-430 (448)
89 PF12768 Rax2: Cortical protei 95.4 0.3 6.5E-06 44.2 11.9 110 162-283 14-130 (281)
90 KOG0315 G-protein beta subunit 95.4 1.7 3.7E-05 37.9 18.8 177 164-361 61-246 (311)
91 KOG0291 WD40-repeat-containing 95.3 3.8 8.2E-05 41.4 21.7 133 215-361 415-551 (893)
92 PF03089 RAG2: Recombination a 95.2 2.1 4.6E-05 38.2 17.9 107 148-261 39-173 (337)
93 KOG0299 U3 snoRNP-associated p 95.2 0.84 1.8E-05 43.1 14.1 145 194-363 212-359 (479)
94 PF08268 FBA_3: F-box associat 95.1 0.6 1.3E-05 36.9 11.7 77 249-326 2-88 (129)
95 PRK00178 tolB translocation pr 95.1 3.6 7.8E-05 39.9 22.6 181 99-319 222-407 (430)
96 PF10282 Lactonase: Lactonase, 95.0 2.9 6.3E-05 39.2 18.0 194 150-361 2-223 (345)
97 PF14870 PSII_BNR: Photosynthe 95.0 2.9 6.3E-05 38.3 18.0 171 172-369 4-180 (302)
98 KOG2997 F-box protein FBX9 [Ge 94.9 0.012 2.7E-07 52.6 1.4 39 34-72 107-153 (366)
99 TIGR02658 TTQ_MADH_Hv methylam 94.8 3.5 7.6E-05 38.7 21.3 63 298-362 258-332 (352)
100 PRK04792 tolB translocation pr 94.8 4.4 9.6E-05 39.6 26.6 177 164-361 242-426 (448)
101 PLN00181 protein SPA1-RELATED; 94.7 4.4 9.6E-05 42.8 20.1 173 164-362 555-740 (793)
102 PRK00178 tolB translocation pr 94.7 4.5 9.7E-05 39.2 25.2 177 164-362 223-408 (430)
103 KOG4378 Nuclear protein COP1 [ 94.5 2.8 6E-05 40.3 15.6 89 269-364 190-284 (673)
104 PF12768 Rax2: Cortical protei 94.4 1.1 2.5E-05 40.5 12.9 118 199-327 2-130 (281)
105 PRK05137 tolB translocation pr 94.4 5.5 0.00012 38.7 22.8 189 99-326 225-420 (435)
106 PF08268 FBA_3: F-box associat 94.3 0.4 8.7E-06 37.9 8.9 69 298-368 4-85 (129)
107 PF07734 FBA_1: F-box associat 94.3 1.1 2.4E-05 37.0 11.9 81 249-329 2-94 (164)
108 cd00216 PQQ_DH Dehydrogenases 94.2 4.7 0.0001 39.9 18.0 119 190-324 56-191 (488)
109 KOG0278 Serine/threonine kinas 94.2 2.4 5.3E-05 37.1 13.5 139 213-370 164-308 (334)
110 PRK04922 tolB translocation pr 94.1 6.1 0.00013 38.4 23.4 182 99-320 227-413 (433)
111 PRK05137 tolB translocation pr 94.0 6.3 0.00014 38.3 27.4 177 164-362 226-414 (435)
112 TIGR02800 propeller_TolB tol-p 94.0 6 0.00013 38.0 22.9 148 100-283 214-363 (417)
113 PLN02919 haloacid dehalogenase 94.0 11 0.00024 41.1 24.2 184 163-362 589-835 (1057)
114 KOG0316 Conserved WD40 repeat- 94.0 3.8 8.3E-05 35.6 18.8 212 142-387 66-283 (307)
115 PF06433 Me-amine-dh_H: Methyl 93.9 1.2 2.6E-05 41.1 12.0 63 298-362 248-322 (342)
116 PRK13684 Ycf48-like protein; P 93.9 5.5 0.00012 37.2 22.9 125 230-372 121-254 (334)
117 KOG0296 Angio-associated migra 93.8 5.3 0.00012 36.8 15.5 157 136-321 63-223 (399)
118 TIGR03032 conserved hypothetic 93.3 1.1 2.3E-05 40.9 10.4 113 268-389 187-319 (335)
119 PF02897 Peptidase_S9_N: Proly 93.3 8.2 0.00018 37.1 20.4 190 163-368 201-412 (414)
120 cd00216 PQQ_DH Dehydrogenases 92.8 11 0.00023 37.4 22.2 106 164-280 71-191 (488)
121 PF14870 PSII_BNR: Photosynthe 92.7 8 0.00017 35.5 19.1 183 141-351 108-296 (302)
122 PRK04922 tolB translocation pr 92.3 12 0.00025 36.5 27.2 178 164-362 228-413 (433)
123 PF03089 RAG2: Recombination a 92.1 3 6.5E-05 37.2 11.2 64 285-349 84-172 (337)
124 PRK03629 tolB translocation pr 92.0 13 0.00028 36.2 23.0 138 164-320 267-408 (429)
125 PLN00181 protein SPA1-RELATED; 92.0 19 0.00041 38.1 21.9 175 164-359 598-792 (793)
126 KOG0286 G-protein beta subunit 91.7 9.6 0.00021 34.3 14.7 176 165-361 78-260 (343)
127 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.6 5.8 0.00013 39.7 14.3 119 190-324 64-197 (527)
128 KOG0318 WD40 repeat stress pro 91.3 15 0.00033 35.7 20.8 76 293-368 448-527 (603)
129 KOG0647 mRNA export protein (c 91.2 11 0.00024 34.0 17.3 149 141-318 77-228 (347)
130 PTZ00420 coronin; Provisional 91.1 19 0.0004 36.3 22.9 142 197-362 139-295 (568)
131 smart00284 OLF Olfactomedin-li 90.7 8.8 0.00019 34.2 12.9 128 252-381 34-188 (255)
132 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.7 9.3 0.0002 38.2 14.8 115 247-369 64-197 (527)
133 KOG1897 Damage-specific DNA bi 90.6 24 0.00051 37.3 17.2 149 196-358 787-940 (1096)
134 KOG1036 Mitotic spindle checkp 90.5 13 0.00028 33.6 15.5 130 215-362 36-165 (323)
135 PF02191 OLF: Olfactomedin-lik 90.3 13 0.00028 33.2 16.1 169 175-360 58-247 (250)
136 PF03178 CPSF_A: CPSF A subuni 90.3 14 0.00029 34.3 14.8 134 164-317 62-203 (321)
137 KOG0266 WD40 repeat-containing 90.0 21 0.00045 35.0 19.7 189 145-362 212-411 (456)
138 KOG0274 Cdc4 and related F-box 89.9 23 0.0005 35.5 18.3 174 164-363 311-485 (537)
139 KOG0293 WD40 repeat-containing 89.8 18 0.00039 34.1 19.2 187 142-362 275-472 (519)
140 COG3823 Glutamine cyclotransfe 89.6 11 0.00024 32.3 11.9 158 189-368 49-212 (262)
141 KOG0305 Anaphase promoting com 89.6 22 0.00047 34.8 17.8 175 164-362 197-378 (484)
142 KOG0289 mRNA splicing factor [ 89.3 17 0.00036 34.6 13.9 133 188-341 350-485 (506)
143 COG1520 FOG: WD40-like repeat 89.3 20 0.00043 33.9 22.5 185 165-372 79-279 (370)
144 KOG0645 WD40 repeat protein [G 89.2 16 0.00034 32.6 14.0 98 264-362 35-137 (312)
145 KOG1036 Mitotic spindle checkp 88.8 18 0.00039 32.7 15.5 128 165-320 36-165 (323)
146 PRK13684 Ycf48-like protein; P 88.7 21 0.00045 33.4 21.6 172 165-360 153-331 (334)
147 KOG0291 WD40-repeat-containing 88.5 32 0.00068 35.2 24.9 186 147-362 319-510 (893)
148 KOG0282 mRNA splicing factor [ 88.4 11 0.00023 36.2 12.1 93 265-362 279-374 (503)
149 PRK01742 tolB translocation pr 88.0 27 0.00059 33.9 18.6 164 100-310 228-393 (429)
150 PRK02889 tolB translocation pr 87.8 28 0.0006 33.8 21.3 180 163-362 175-362 (427)
151 PRK10115 protease 2; Provision 87.5 39 0.00084 35.1 25.6 185 162-362 197-396 (686)
152 KOG0316 Conserved WD40 repeat- 87.4 19 0.00041 31.5 18.2 181 96-320 77-259 (307)
153 KOG0266 WD40 repeat-containing 86.7 33 0.00072 33.6 19.4 146 195-362 214-366 (456)
154 PRK03629 tolB translocation pr 86.5 33 0.00071 33.3 27.8 178 164-362 223-408 (429)
155 PF02191 OLF: Olfactomedin-lik 86.5 23 0.0005 31.5 16.4 160 141-318 73-247 (250)
156 PTZ00421 coronin; Provisional 86.4 37 0.00079 33.7 23.7 144 196-362 138-292 (493)
157 KOG2048 WD40 repeat protein [G 86.3 28 0.00061 34.9 14.1 133 230-368 418-556 (691)
158 KOG1898 Splicing factor 3b, su 86.3 33 0.00071 36.6 15.1 133 214-357 912-1045(1205)
159 PRK02889 tolB translocation pr 85.9 35 0.00076 33.1 27.0 187 164-374 220-415 (427)
160 PF06433 Me-amine-dh_H: Methyl 85.5 10 0.00022 35.2 10.3 193 97-322 115-324 (342)
161 PRK04043 tolB translocation pr 84.9 39 0.00085 32.7 21.3 181 99-320 212-402 (419)
162 KOG0294 WD40 repeat-containing 84.7 31 0.00068 31.4 13.1 45 173-225 28-74 (362)
163 KOG0647 mRNA export protein (c 84.6 11 0.00025 34.0 9.7 118 254-382 86-206 (347)
164 PRK04043 tolB translocation pr 83.9 43 0.00093 32.4 19.3 176 164-362 213-402 (419)
165 KOG2321 WD40 repeat protein [G 83.9 10 0.00022 37.4 9.7 104 252-362 145-260 (703)
166 KOG0640 mRNA cleavage stimulat 83.4 12 0.00027 33.9 9.5 107 252-362 227-337 (430)
167 TIGR03074 PQQ_membr_DH membran 82.8 58 0.0012 34.3 15.6 37 189-236 188-224 (764)
168 KOG1332 Vesicle coat complex C 82.5 34 0.00073 30.2 13.6 69 246-327 226-296 (299)
169 PF02239 Cytochrom_D1: Cytochr 82.3 43 0.00094 31.8 13.6 176 163-362 15-204 (369)
170 COG3391 Uncharacterized conser 82.2 47 0.001 31.6 16.0 148 195-362 85-241 (381)
171 PF11768 DUF3312: Protein of u 82.0 56 0.0012 32.4 14.3 89 269-362 239-331 (545)
172 COG2706 3-carboxymuconate cycl 81.8 44 0.00095 31.0 25.6 246 73-365 51-326 (346)
173 COG1520 FOG: WD40-like repeat 81.7 48 0.001 31.3 21.8 229 101-373 79-334 (370)
174 PLN00033 photosystem II stabil 81.5 52 0.0011 31.6 22.1 124 219-357 265-396 (398)
175 COG4257 Vgb Streptogramin lyas 81.4 40 0.00088 30.3 16.5 176 164-368 83-267 (353)
176 smart00284 OLF Olfactomedin-li 81.2 40 0.00086 30.1 16.3 160 141-318 78-252 (255)
177 KOG1274 WD40 repeat protein [G 80.9 77 0.0017 33.2 16.9 60 299-361 200-263 (933)
178 COG4946 Uncharacterized protei 80.6 58 0.0012 31.6 17.7 183 162-365 105-300 (668)
179 KOG0318 WD40 repeat stress pro 80.6 60 0.0013 31.8 20.9 111 248-363 450-563 (603)
180 KOG4378 Nuclear protein COP1 [ 79.9 45 0.00097 32.5 12.3 94 215-319 188-281 (673)
181 KOG0279 G protein beta subunit 79.1 48 0.001 29.8 16.0 146 195-362 74-224 (315)
182 COG4946 Uncharacterized protei 77.9 70 0.0015 31.0 22.2 121 141-282 176-303 (668)
183 KOG0265 U5 snRNP-specific prot 77.8 42 0.0009 30.5 10.8 135 195-361 58-205 (338)
184 PF07433 DUF1513: Protein of u 77.4 59 0.0013 29.8 18.9 96 147-258 16-115 (305)
185 KOG0278 Serine/threonine kinas 77.1 52 0.0011 29.1 11.7 60 252-317 235-296 (334)
186 KOG1523 Actin-related protein 76.5 62 0.0014 29.7 13.4 151 212-372 30-194 (361)
187 PRK02888 nitrous-oxide reducta 75.7 98 0.0021 31.5 14.2 63 298-362 286-353 (635)
188 cd00094 HX Hemopexin-like repe 75.3 50 0.0011 28.0 17.9 100 253-362 63-177 (194)
189 KOG0639 Transducin-like enhanc 73.8 94 0.002 30.4 14.3 107 250-361 474-582 (705)
190 KOG4649 PQQ (pyrrolo-quinoline 73.7 53 0.0012 29.3 10.2 106 248-362 17-125 (354)
191 PTZ00421 coronin; Provisional 73.6 1E+02 0.0022 30.7 18.2 93 265-362 147-247 (493)
192 PF09910 DUF2139: Uncharacteri 71.6 81 0.0018 28.8 15.4 161 141-319 40-231 (339)
193 KOG0639 Transducin-like enhanc 71.1 1.1E+02 0.0023 30.0 15.2 105 195-319 476-582 (705)
194 COG3823 Glutamine cyclotransfe 71.0 68 0.0015 27.7 14.0 165 163-351 67-250 (262)
195 PF15525 DUF4652: Domain of un 69.9 67 0.0014 27.1 10.0 74 100-186 88-162 (200)
196 KOG0285 Pleiotropic regulator 69.7 98 0.0021 28.9 12.5 131 215-362 174-309 (460)
197 PLN00033 photosystem II stabil 68.7 1.1E+02 0.0025 29.3 21.8 132 172-325 73-214 (398)
198 KOG2048 WD40 repeat protein [G 68.2 1.4E+02 0.0031 30.2 16.0 40 214-259 47-87 (691)
199 KOG1539 WD repeat protein [Gen 68.1 1.6E+02 0.0035 30.8 15.0 142 162-324 468-612 (910)
200 PTZ00420 coronin; Provisional 67.5 1.5E+02 0.0032 30.1 16.8 143 164-325 148-300 (568)
201 KOG0289 mRNA splicing factor [ 67.4 47 0.001 31.7 9.1 63 298-362 357-421 (506)
202 KOG0286 G-protein beta subunit 66.6 1E+02 0.0022 28.0 22.6 178 164-362 119-305 (343)
203 KOG1517 Guanine nucleotide bin 66.6 1.3E+02 0.0028 32.5 12.8 103 251-362 1176-1289(1387)
204 PF07734 FBA_1: F-box associat 66.1 72 0.0016 26.1 14.4 83 192-282 2-91 (164)
205 cd00094 HX Hemopexin-like repe 65.9 82 0.0018 26.7 16.7 63 252-321 110-178 (194)
206 PF13013 F-box-like_2: F-box-l 65.0 9.3 0.0002 29.1 3.5 17 34-50 22-38 (109)
207 PF13859 BNR_3: BNR repeat-lik 65.0 1.2E+02 0.0025 28.1 14.2 186 141-329 3-217 (310)
208 KOG0263 Transcription initiati 64.3 86 0.0019 32.1 10.8 109 248-362 541-651 (707)
209 PLN03215 ascorbic acid mannose 64.3 1.3E+02 0.0029 28.5 13.8 35 33-67 3-41 (373)
210 KOG0276 Vesicle coat complex C 63.5 1.7E+02 0.0038 29.5 17.1 101 270-372 160-278 (794)
211 KOG1445 Tumor-specific antigen 63.4 59 0.0013 32.7 9.3 95 268-362 744-846 (1012)
212 PRK01742 tolB translocation pr 63.1 1.5E+02 0.0032 28.7 26.1 161 164-350 228-391 (429)
213 TIGR03074 PQQ_membr_DH membran 63.0 2.1E+02 0.0045 30.3 19.7 165 189-368 310-484 (764)
214 KOG0263 Transcription initiati 61.9 87 0.0019 32.1 10.4 104 195-319 545-650 (707)
215 TIGR02658 TTQ_MADH_Hv methylam 61.8 1.4E+02 0.0031 28.1 22.8 102 100-225 27-139 (352)
216 KOG4341 F-box protein containi 61.1 7.6 0.00016 36.9 2.8 34 36-69 74-110 (483)
217 PF03088 Str_synth: Strictosid 60.4 48 0.001 24.3 6.4 49 310-360 37-87 (89)
218 KOG0306 WD40-repeat-containing 60.0 2.2E+02 0.0047 29.6 14.9 174 162-361 41-220 (888)
219 PF02239 Cytochrom_D1: Cytochr 59.4 45 0.00097 31.7 7.9 92 264-362 14-110 (369)
220 COG4880 Secreted protein conta 59.2 1.7E+02 0.0038 28.2 13.7 27 298-328 574-600 (603)
221 KOG3545 Olfactomedin and relat 59.1 1.3E+02 0.0028 26.7 10.5 64 299-362 30-98 (249)
222 PF13570 PQQ_3: PQQ-like domai 58.9 19 0.00042 21.4 3.6 25 336-361 16-40 (40)
223 KOG0641 WD40 repeat protein [G 57.9 1.3E+02 0.0028 26.2 13.2 76 287-362 180-263 (350)
224 COG0823 TolB Periplasmic compo 56.0 2E+02 0.0044 27.9 12.5 102 214-326 218-322 (425)
225 PF02897 Peptidase_S9_N: Proly 55.8 1.9E+02 0.0042 27.6 18.9 186 163-360 149-357 (414)
226 KOG1332 Vesicle coat complex C 54.7 1.6E+02 0.0034 26.2 13.9 29 301-329 176-204 (299)
227 PF13088 BNR_2: BNR repeat-lik 52.9 1.7E+02 0.0036 26.0 12.2 146 193-346 116-275 (275)
228 PF14583 Pectate_lyase22: Olig 52.8 2.1E+02 0.0046 27.3 19.3 24 97-120 57-80 (386)
229 KOG0279 G protein beta subunit 52.8 1.8E+02 0.0039 26.3 17.0 103 254-362 162-264 (315)
230 KOG0649 WD40 repeat protein [G 52.4 1.7E+02 0.0037 26.0 12.3 142 146-318 126-274 (325)
231 KOG0264 Nucleosome remodeling 52.3 1.7E+02 0.0037 28.0 10.0 66 297-363 282-350 (422)
232 PRK01029 tolB translocation pr 52.2 2.3E+02 0.005 27.5 21.6 217 62-325 184-410 (428)
233 PF07433 DUF1513: Protein of u 51.2 2E+02 0.0043 26.5 19.8 239 98-362 26-287 (305)
234 PF08662 eIF2A: Eukaryotic tra 49.1 1.6E+02 0.0035 24.8 10.3 57 266-329 83-142 (194)
235 KOG0646 WD40 repeat protein [G 48.1 2.7E+02 0.0058 27.0 13.0 62 299-363 188-250 (476)
236 KOG1408 WD40 repeat protein [F 47.9 3.4E+02 0.0074 28.2 17.0 62 298-362 268-356 (1080)
237 KOG0308 Conserved WD40 repeat- 47.2 1.9E+02 0.004 29.4 9.8 62 298-361 181-244 (735)
238 KOG0315 G-protein beta subunit 47.2 2.1E+02 0.0045 25.5 20.7 195 146-368 94-297 (311)
239 KOG4499 Ca2+-binding protein R 47.0 1.9E+02 0.0042 25.6 8.8 49 293-343 216-264 (310)
240 KOG1446 Histone H3 (Lys4) meth 46.6 2.3E+02 0.0051 25.9 21.7 23 340-362 242-264 (311)
241 PF11134 Phage_stabilise: Phag 45.9 2.9E+02 0.0063 26.8 10.5 64 251-319 296-364 (469)
242 PF08309 LVIVD: LVIVD repeat; 45.3 71 0.0015 19.6 4.7 29 334-363 4-32 (42)
243 KOG1517 Guanine nucleotide bin 45.0 4.5E+02 0.0098 28.8 13.6 164 176-362 1154-1335(1387)
244 KOG2919 Guanine nucleotide-bin 44.3 2.6E+02 0.0057 25.9 11.6 86 298-386 261-352 (406)
245 KOG1273 WD40 repeat protein [G 43.6 64 0.0014 29.6 5.6 63 298-363 33-98 (405)
246 KOG0771 Prolactin regulatory e 43.2 3E+02 0.0065 26.2 11.4 106 251-362 196-313 (398)
247 KOG2502 Tub family proteins [G 43.2 16 0.00034 33.8 1.9 38 32-69 43-91 (355)
248 KOG0305 Anaphase promoting com 43.1 2.8E+02 0.006 27.4 10.3 63 298-362 227-290 (484)
249 KOG4283 Transcription-coupled 42.6 2.7E+02 0.0058 25.5 11.3 65 297-361 111-177 (397)
250 KOG2111 Uncharacterized conser 41.6 2.9E+02 0.0062 25.5 18.0 148 146-321 58-215 (346)
251 COG3386 Gluconolactonase [Carb 41.5 2.9E+02 0.0063 25.5 21.2 167 165-349 86-275 (307)
252 KOG3881 Uncharacterized conser 41.4 3.2E+02 0.0069 26.0 11.7 146 197-361 162-321 (412)
253 KOG2321 WD40 repeat protein [G 40.0 4.1E+02 0.0088 26.8 15.8 52 164-225 155-208 (703)
254 KOG0299 U3 snoRNP-associated p 39.4 3.7E+02 0.008 26.1 17.7 50 298-347 390-442 (479)
255 KOG0285 Pleiotropic regulator 39.2 3.4E+02 0.0073 25.6 16.9 67 293-360 365-439 (460)
256 KOG0283 WD40 repeat-containing 38.8 4.7E+02 0.01 27.2 15.2 163 125-317 403-575 (712)
257 KOG0649 WD40 repeat protein [G 38.8 2.8E+02 0.0061 24.6 15.5 157 175-357 100-271 (325)
258 COG0823 TolB Periplasmic compo 38.7 3.8E+02 0.0082 26.1 15.8 150 100-283 218-368 (425)
259 KOG0306 WD40-repeat-containing 38.2 3.1E+02 0.0067 28.5 9.9 82 293-378 378-470 (888)
260 PF00400 WD40: WD domain, G-be 37.7 80 0.0017 18.0 5.0 18 341-358 22-39 (39)
261 PF14583 Pectate_lyase22: Olig 37.5 3.7E+02 0.0081 25.7 11.5 149 195-362 46-226 (386)
262 PF06977 SdiA-regulated: SdiA- 36.1 1.9E+02 0.0041 25.8 7.5 58 298-357 181-247 (248)
263 KOG0265 U5 snRNP-specific prot 35.4 3.5E+02 0.0077 24.8 11.6 86 270-362 76-165 (338)
264 KOG0271 Notchless-like WD40 re 35.2 3E+02 0.0064 26.2 8.6 63 298-362 125-189 (480)
265 PF01011 PQQ: PQQ enzyme repea 34.7 98 0.0021 18.1 4.1 14 307-320 7-20 (38)
266 KOG0282 mRNA splicing factor [ 34.5 90 0.0019 30.2 5.4 62 298-362 268-332 (503)
267 PF01436 NHL: NHL repeat; Int 34.2 82 0.0018 17.1 3.8 23 293-315 6-28 (28)
268 PF14781 BBS2_N: Ciliary BBSom 32.7 91 0.002 24.8 4.4 65 299-369 63-133 (136)
269 COG4447 Uncharacterized protei 32.4 3.9E+02 0.0085 24.3 10.0 119 187-327 46-165 (339)
270 KOG0272 U4/U6 small nuclear ri 31.9 4.7E+02 0.01 25.1 12.0 23 195-225 356-378 (459)
271 TIGR02604 Piru_Ver_Nterm putat 31.8 4.4E+02 0.0096 24.8 14.5 95 246-347 75-200 (367)
272 PF03022 MRJP: Major royal jel 31.6 4E+02 0.0086 24.2 21.4 189 145-348 10-253 (287)
273 KOG0308 Conserved WD40 repeat- 31.6 1.3E+02 0.0028 30.5 6.1 66 297-362 127-203 (735)
274 PF12217 End_beta_propel: Cata 31.6 3.9E+02 0.0084 24.0 14.7 160 141-307 79-257 (367)
275 KOG0293 WD40 repeat-containing 31.2 4.9E+02 0.011 25.1 15.6 149 141-321 317-473 (519)
276 KOG0294 WD40 repeat-containing 30.9 4.3E+02 0.0094 24.4 18.7 27 141-174 47-73 (362)
277 PF00780 CNH: CNH domain; Int 30.8 3.8E+02 0.0082 23.7 14.0 63 299-363 103-168 (275)
278 KOG0283 WD40 repeat-containing 30.3 6.5E+02 0.014 26.2 12.2 133 215-361 433-577 (712)
279 KOG0302 Ribosome Assembly prot 29.9 1.5E+02 0.0033 27.9 5.9 62 302-363 316-381 (440)
280 KOG0640 mRNA cleavage stimulat 29.0 4.7E+02 0.01 24.2 11.3 156 212-379 236-413 (430)
281 KOG0264 Nucleosome remodeling 28.9 4.2E+02 0.009 25.5 8.7 64 297-362 237-305 (422)
282 COG3386 Gluconolactonase [Carb 28.9 4.7E+02 0.01 24.1 15.7 30 248-279 219-248 (307)
283 KOG0319 WD40-repeat-containing 28.3 6.9E+02 0.015 26.0 12.9 59 302-361 252-312 (775)
284 KOG1408 WD40 repeat protein [F 28.1 7.1E+02 0.015 26.0 13.5 31 332-362 459-491 (1080)
285 PF14783 BBS2_Mid: Ciliary BBS 27.8 2.8E+02 0.0061 21.2 7.3 63 301-370 16-78 (111)
286 PF12217 End_beta_propel: Cata 27.7 4.5E+02 0.0098 23.6 12.9 155 188-348 77-256 (367)
287 KOG2106 Uncharacterized conser 26.8 6.4E+02 0.014 25.0 19.8 199 132-358 99-314 (626)
288 PRK10115 protease 2; Provision 26.7 7.5E+02 0.016 25.8 21.7 182 163-361 152-347 (686)
289 KOG3926 F-box proteins [Amino 26.7 85 0.0018 28.1 3.6 20 31-50 199-218 (332)
290 KOG1963 WD40 repeat protein [G 26.0 4.6E+02 0.0099 27.6 9.0 60 298-359 261-321 (792)
291 PF15525 DUF4652: Domain of un 25.9 4.1E+02 0.0089 22.5 11.1 81 266-346 88-177 (200)
292 COG4447 Uncharacterized protei 25.8 5.2E+02 0.011 23.6 13.7 101 255-361 228-333 (339)
293 KOG2445 Nuclear pore complex c 25.8 3.3E+02 0.0072 25.1 7.1 32 299-330 183-221 (361)
294 COG1770 PtrB Protease II [Amin 25.4 7.7E+02 0.017 25.5 21.3 64 212-283 246-313 (682)
295 smart00564 PQQ beta-propeller 25.4 1.3E+02 0.0028 16.5 4.3 28 340-369 5-32 (33)
296 KOG0321 WD40 repeat-containing 24.5 3.4E+02 0.0073 27.6 7.5 58 264-321 120-178 (720)
297 PF06977 SdiA-regulated: SdiA- 24.4 4.3E+02 0.0093 23.5 7.8 61 299-360 33-94 (248)
298 KOG1445 Tumor-specific antigen 24.4 4.1E+02 0.0089 27.2 8.0 58 164-225 742-801 (1012)
299 KOG3881 Uncharacterized conser 24.0 6.3E+02 0.014 24.0 10.7 138 162-320 171-322 (412)
300 PF14517 Tachylectin: Tachylec 23.9 1.8E+02 0.0039 25.5 5.1 111 251-368 43-166 (229)
301 TIGR02276 beta_rpt_yvtn 40-res 23.3 1.6E+02 0.0036 17.0 4.8 23 299-321 3-25 (42)
302 PF06079 Apyrase: Apyrase; In 23.3 2.3E+02 0.005 25.8 5.8 56 246-307 57-118 (291)
303 KOG1273 WD40 repeat protein [G 23.1 6.1E+02 0.013 23.5 17.1 61 298-360 163-226 (405)
304 KOG1310 WD40 repeat protein [G 22.8 4.1E+02 0.0089 26.6 7.6 63 297-361 59-126 (758)
305 KOG1897 Damage-specific DNA bi 22.5 1E+03 0.022 25.9 16.6 129 162-310 805-934 (1096)
306 PF08662 eIF2A: Eukaryotic tra 22.4 4.7E+02 0.01 22.0 9.1 86 299-387 71-168 (194)
307 cd01206 Homer Homer type EVH1 22.4 3.1E+02 0.0067 20.9 5.4 58 311-368 12-78 (111)
308 COG2706 3-carboxymuconate cycl 22.2 6.6E+02 0.014 23.6 22.8 187 165-363 67-277 (346)
309 KOG0272 U4/U6 small nuclear ri 22.0 7.2E+02 0.016 24.0 14.1 69 293-362 308-377 (459)
310 KOG0271 Notchless-like WD40 re 21.8 7.1E+02 0.015 23.8 14.2 61 299-361 216-277 (480)
311 KOG1034 Transcriptional repres 21.3 1.4E+02 0.0031 27.6 4.0 62 299-360 318-383 (385)
312 PF14157 YmzC: YmzC-like prote 20.9 2.3E+02 0.005 19.1 3.9 29 298-326 27-57 (63)
313 PF03022 MRJP: Major royal jel 20.2 6.6E+02 0.014 22.8 11.9 77 251-327 10-106 (287)
314 KOG0270 WD40 repeat-containing 20.0 8.1E+02 0.018 23.8 13.8 61 302-362 388-451 (463)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=8.6e-38 Score=307.06 Aligned_cols=296 Identities=19% Similarity=0.292 Sum_probs=243.5
Q ss_pred CCCCcHHHHHHHHhcCC----chhhH---hhhHhHHHhhcCCC----CCC------cccEEEEeecCCCCCCCCCCcccC
Q 016368 34 LPGLPNHLADRCLSSLP----PALLF---SVCHSWRRLLYSPY----FPP------FFSLYALLFNNNKPSHNNNNYYSF 96 (390)
Q Consensus 34 ~~~LP~dl~~~iL~rLP----l~~~r---~Vck~W~~l~~s~~----f~~------~~~l~~~~~~~~~~~~~~~~~~~~ 96 (390)
+|-||...+.+++...+ -..++ .-.|.|+.+-.... ... ...|+++++-.+ ..
T Consensus 228 ~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~----------~~ 297 (571)
T KOG4441|consen 228 LPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNR----------QG 297 (571)
T ss_pred ccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCC----------CC
Confidence 46788888888877776 11222 22345655554321 111 345666654330 11
Q ss_pred CCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCce
Q 016368 97 NSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTW 176 (390)
Q Consensus 97 ~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W 176 (390)
.....+.+|||.++.|..++++|. +|.+ +.++++.+.+|++||.+. ....++.+++|||.+++|
T Consensus 298 ~~~~~ve~yd~~~~~w~~~a~m~~-~r~~--------------~~~~~~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 298 QSLRSVECYDPKTNEWSSLAPMPS-PRCR--------------VGVAVLNGKLYVVGGYDS-GSDRLSSVERYDPRTNQW 361 (571)
T ss_pred cccceeEEecCCcCcEeecCCCCc-cccc--------------ccEEEECCEEEEEccccC-CCcccceEEEecCCCCce
Confidence 334568999999999999999998 7754 277788889999999873 226889999999999999
Q ss_pred ecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEE
Q 016368 177 FFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLC 256 (390)
Q Consensus 177 ~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~ly 256 (390)
..+++|+.+|..+++++++|+||++||.++ ...++++|+|||.++. |+.+++|+..+. ++++++++|+||
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg---~~~l~svE~YDp~~~~----W~~va~m~~~r~---~~gv~~~~g~iY 431 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDG---EKSLNSVECYDPVTNK----WTPVAPMLTRRS---GHGVAVLGGKLY 431 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEecccc---ccccccEEEecCCCCc----ccccCCCCccee---eeEEEEECCEEE
Confidence 999999999999999999999999999996 6788899999999999 999999998776 799999999999
Q ss_pred EEcccCCC---CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC-----cEEEEECCCCceEEcccc
Q 016368 257 MVNLKGNG---AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG-----RLSKYDADHDWWDEVIEL 328 (390)
Q Consensus 257 v~gg~g~~---~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-----~v~~yd~~~~~W~~i~~~ 328 (390)
++||.... ..++++|||.+++|+.+++ |+.+|.++++++ ++|+||++||+++ .+++||+++++|+.+..|
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~-M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAP-MNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCC-cccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 99986333 3678999999999999999 999999999998 9999999999776 689999999999999999
Q ss_pred cccccceeEEEECCEEEEEeeCC-----ceEEEEEcCCCCCcceEec
Q 016368 329 AELKGAEKITAARGRVCAVCENG-----ERIMVVDVLASPARAWLVD 370 (390)
Q Consensus 329 p~~r~~~~~~~~~g~l~i~g~~~-----~~v~~~d~~~~~~~~W~~~ 370 (390)
+.+|...++++++++||++|+.. +.+..||+.+. +|...
T Consensus 510 ~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d---~W~~~ 553 (571)
T KOG4441|consen 510 TSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD---TWTEV 553 (571)
T ss_pred ccccccccEEEECCEEEEEecccCccccceeEEcCCCCC---ceeeC
Confidence 99999999999999999998652 37888888887 89943
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=307.01 Aligned_cols=241 Identities=12% Similarity=0.228 Sum_probs=208.6
Q ss_pred eEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCC
Q 016368 101 EFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGP 180 (390)
Q Consensus 101 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~ 180 (390)
.+.+||+.+++|..++++|. ++.. +.++++++.+|++||..... ...+++++|||.+++|..++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~-~r~~--------------~~~a~l~~~IYviGG~~~~~-~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPN-HIIN--------------YASAIVDNEIIIAGGYNFNN-PSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCc-cccc--------------eEEEEECCEEEEEcCCCCCC-CccceEEEEECCCCeEeeCC
Confidence 47899999999999999998 6643 16777888999999864222 45688999999999999999
Q ss_pred CCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcc
Q 016368 181 QLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNL 260 (390)
Q Consensus 181 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg 260 (390)
+|+.+|..+++++++++||++||.+. ....+++++|||.+++ |+.+++|+.++. .+++++++|+||++||
T Consensus 337 ~m~~~R~~~~~~~~~g~IYviGG~~~---~~~~~sve~Ydp~~~~----W~~~~~mp~~r~---~~~~~~~~g~IYviGG 406 (557)
T PHA02713 337 PMIKNRCRFSLAVIDDTIYAIGGQNG---TNVERTIECYTMGDDK----WKMLPDMPIALS---SYGMCVLDQYIYIIGG 406 (557)
T ss_pred CCcchhhceeEEEECCEEEEECCcCC---CCCCceEEEEECCCCe----EEECCCCCcccc---cccEEEECCEEEEEeC
Confidence 99999999999999999999999865 3457789999999999 999999998877 5888899999999997
Q ss_pred cCCC--------------------CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC------cEEE
Q 016368 261 KGNG--------------------AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG------RLSK 314 (390)
Q Consensus 261 ~g~~--------------------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~------~v~~ 314 (390)
.... ...+++||+.+++|+.+++ |+.++..+++++ ++|+||++||.++ .+++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~ 484 (557)
T PHA02713 407 RTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFR 484 (557)
T ss_pred CCcccccccccccccccccccccccceEEEECCCCCeEeecCC-CCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEE
Confidence 5311 2457899999999999999 889999999888 9999999999642 5789
Q ss_pred EECCC-CceEEcccccccccceeEEEECCEEEEEeeCCc--eEEEEEcCCCCCcceEecCC
Q 016368 315 YDADH-DWWDEVIELAELKGAEKITAARGRVCAVCENGE--RIMVVDVLASPARAWLVDPP 372 (390)
Q Consensus 315 yd~~~-~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~--~v~~~d~~~~~~~~W~~~~p 372 (390)
|||++ ++|+.+++||.+|..+++++++|+||++||... .+..||+.+. +|....|
T Consensus 485 Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~---~W~~~~~ 542 (557)
T PHA02713 485 YNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY---EWNHICH 542 (557)
T ss_pred ecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc---cccchhh
Confidence 99999 899999999999999999999999999987544 6888999888 8996544
No 3
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=272.75 Aligned_cols=237 Identities=15% Similarity=0.253 Sum_probs=201.9
Q ss_pred eEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCC
Q 016368 101 EFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGP 180 (390)
Q Consensus 101 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~ 180 (390)
....|++.+++|..++..+. ... +.+++.++.+|++||..... ...+++++||+.+++|..++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~lyv~GG~~~~~-~~~~~v~~yd~~~~~W~~~~ 327 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHY-VYC---------------FGSVVLNNVIYFIGGMNKNN-LSVNSVVSYDTKTKSWNKVP 327 (534)
T ss_pred eeeecchhhhhcccccCccc-ccc---------------ceEEEECCEEEEECCCcCCC-CeeccEEEEeCCCCeeeECC
Confidence 35578888899998876554 221 16778888999999875432 45678999999999999999
Q ss_pred CCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcc
Q 016368 181 QLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNL 260 (390)
Q Consensus 181 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg 260 (390)
+|+.+|..+++++++++||++||... ....+++++||+.+++ |+.++++|.++. .++++.++|++|++||
T Consensus 328 ~~~~~R~~~~~~~~~~~lyv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~lp~~r~---~~~~~~~~~~iYv~GG 397 (534)
T PHA03098 328 ELIYPRKNPGVTVFNNRIYVIGGIYN---SISLNTVESWKPGESK----WREEPPLIFPRY---NPCVVNVNNLIYVIGG 397 (534)
T ss_pred CCCcccccceEEEECCEEEEEeCCCC---CEecceEEEEcCCCCc----eeeCCCcCcCCc---cceEEEECCEEEEECC
Confidence 99999999999999999999999874 4567899999999999 999999998776 6888899999999997
Q ss_pred cCCC---CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC--------cEEEEECCCCceEEccccc
Q 016368 261 KGNG---AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG--------RLSKYDADHDWWDEVIELA 329 (390)
Q Consensus 261 ~g~~---~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~--------~v~~yd~~~~~W~~i~~~p 329 (390)
...+ ..++++||+.+++|+.+++ +|.++.++++++ .+++||++||... .+++||+++++|++++.++
T Consensus 398 ~~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 475 (534)
T PHA03098 398 ISKNDELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN 475 (534)
T ss_pred cCCCCcccceEEEEeCCCCeeeecCC-CCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC
Confidence 5222 3568899999999999998 888898888887 9999999999542 4999999999999999999
Q ss_pred ccccceeEEEECCEEEEEeeCC-----ceEEEEEcCCCCCcceEe
Q 016368 330 ELKGAEKITAARGRVCAVCENG-----ERIMVVDVLASPARAWLV 369 (390)
Q Consensus 330 ~~r~~~~~~~~~g~l~i~g~~~-----~~v~~~d~~~~~~~~W~~ 369 (390)
.+|..+++++++++|||+||.. +++++||+.+. +|..
T Consensus 476 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~---~W~~ 517 (534)
T PHA03098 476 FPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN---TWTL 517 (534)
T ss_pred cccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC---EEEe
Confidence 8898899999999999998653 47999999988 8984
No 4
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5.5e-32 Score=253.61 Aligned_cols=232 Identities=15% Similarity=0.225 Sum_probs=185.2
Q ss_pred CCCCceeCCC----CCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCC
Q 016368 108 ISSTWNPLPA----PPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLS 183 (390)
Q Consensus 108 ~~~~W~~l~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~ 183 (390)
....|.++.. +|. ||.. +.++++++.+|++||.........+++++||+.+++|..++++.
T Consensus 5 ~~~~W~~~~~~~~~~P~-pR~~--------------h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 69 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPG-PRCS--------------HGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANG 69 (341)
T ss_pred cCCeEEEecCCCCCCCC-CCCc--------------ceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccC
Confidence 5567998876 455 6643 16777788999998875432234579999999999999988764
Q ss_pred -CCC---cceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC-----CCCCccccceEEEEECCE
Q 016368 184 -IPR---RWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL-----KDGRFSREAVEAVGFKGN 254 (390)
Q Consensus 184 -~~r---~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~-----~~~~~~r~~~~~~~~~g~ 254 (390)
.+| ..+++++++++||++||... ....+++++||+++++ |+.++.+ |.++ ..+++++.+++
T Consensus 70 ~~p~~~~~~~~~~~~~~~iyv~GG~~~---~~~~~~v~~yd~~t~~----W~~~~~~~~~~~p~~R---~~~~~~~~~~~ 139 (341)
T PLN02153 70 DVPRISCLGVRMVAVGTKLYIFGGRDE---KREFSDFYSYDTVKNE----WTFLTKLDEEGGPEAR---TFHSMASDENH 139 (341)
T ss_pred CCCCCccCceEEEEECCEEEEECCCCC---CCccCcEEEEECCCCE----EEEeccCCCCCCCCCc---eeeEEEEECCE
Confidence 344 36888999999999999875 3456799999999999 9999877 4444 47889999999
Q ss_pred EEEEcccCCC--------CceeEEEeCCCCCeEecCCC--CCCCCCCceEEEeeCCeEEEEeCCC-------------Cc
Q 016368 255 LCMVNLKGNG--------AKDGAIYNVELDKWKEMPEG--MHAGWNGPAASTMNEEELYVVNEGK-------------GR 311 (390)
Q Consensus 255 lyv~gg~g~~--------~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~-------------~~ 311 (390)
|||+||.... ..++++||+++++|+.++.. .+.+|.++++++ ++++||++||.. ++
T Consensus 140 iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~ 218 (341)
T PLN02153 140 VYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNA 218 (341)
T ss_pred EEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCc
Confidence 9999986321 13578999999999998862 236677888887 999999998742 37
Q ss_pred EEEEECCCCceEEccc---ccccccceeEEEECCEEEEEeeCC--------------ceEEEEEcCCCCCcceE
Q 016368 312 LSKYDADHDWWDEVIE---LAELKGAEKITAARGRVCAVCENG--------------ERIMVVDVLASPARAWL 368 (390)
Q Consensus 312 v~~yd~~~~~W~~i~~---~p~~r~~~~~~~~~g~l~i~g~~~--------------~~v~~~d~~~~~~~~W~ 368 (390)
+++||+++++|+++.. +|.+|..+++++++++|||+|+.. ++++.||+.+. .|+
T Consensus 219 v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~---~W~ 289 (341)
T PLN02153 219 VQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL---VWE 289 (341)
T ss_pred eEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc---EEE
Confidence 9999999999999874 577888899999999999999741 37999999888 898
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=269.70 Aligned_cols=245 Identities=18% Similarity=0.285 Sum_probs=204.6
Q ss_pred hHhHHHhhcCCCCCC-------cccEEEEeecCCCCCCCCCCcccCCCceeEEEEeCCCCCceeCCCCCCCCCccccccc
Q 016368 58 CHSWRRLLYSPYFPP-------FFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRH 130 (390)
Q Consensus 58 ck~W~~l~~s~~f~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~ 130 (390)
.+.|..+..-|.=.. ...+|++++.+. +......+++|||.+++|..+++|.. +|..
T Consensus 310 ~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~----------~~~~l~~ve~YD~~~~~W~~~a~M~~-~R~~----- 373 (571)
T KOG4441|consen 310 TNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDS----------GSDRLSSVERYDPRTNQWTPVAPMNT-KRSD----- 373 (571)
T ss_pred cCcEeecCCCCcccccccEEEECCEEEEEccccC----------CCcccceEEEecCCCCceeccCCccC-cccc-----
Confidence 346777666553222 567888876541 11344579999999999999999999 7754
Q ss_pred ccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCC
Q 016368 131 PSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRG 210 (390)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~ 210 (390)
+++++++|.+|++||.++. ...+.+++|||.+++|..+++|+.+|..+++++++++||++||.+.. .
T Consensus 374 ---------~~v~~l~g~iYavGG~dg~--~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~--~ 440 (571)
T KOG4441|consen 374 ---------FGVAVLDGKLYAVGGFDGE--KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS--S 440 (571)
T ss_pred ---------ceeEEECCEEEEEeccccc--cccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC--c
Confidence 2788889999999998754 68889999999999999999999999999999999999999999873 3
Q ss_pred CccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCC--CCceeEEEeCCCCCeEecCCCCCCC
Q 016368 211 DVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGN--GAKDGAIYNVELDKWKEMPEGMHAG 288 (390)
Q Consensus 211 ~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~--~~~~~~~yd~~~~~W~~~~~~~~~~ 288 (390)
..++++++|||.+++ |+.+++|+.+|. .+++++++++||++||... ....+++||+++++|+.+.+ |..+
T Consensus 441 ~~l~sve~YDP~t~~----W~~~~~M~~~R~---~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~-m~~~ 512 (571)
T KOG4441|consen 441 NCLNSVECYDPETNT----WTLIAPMNTRRS---GFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP-MTSP 512 (571)
T ss_pred cccceEEEEcCCCCc----eeecCCcccccc---cceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc-Cccc
Confidence 388999999999999 999999999887 6889999999999987632 23457899999999999988 9899
Q ss_pred CCCceEEEeeCCeEEEEeCCCC-----cEEEEECCCCceEEcccccccccceeEEEE
Q 016368 289 WNGPAASTMNEEELYVVNEGKG-----RLSKYDADHDWWDEVIELAELKGAEKITAA 340 (390)
Q Consensus 289 ~~~~~~~~~~~g~lyv~gg~~~-----~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~ 340 (390)
+...++++ .+++||++||.++ .+..||+++++|+...++...+...++++.
T Consensus 513 rs~~g~~~-~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 513 RSAVGVVV-LGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPESGRGGAGVAVI 568 (571)
T ss_pred cccccEEE-ECCEEEEEecccCccccceeEEcCCCCCceeeCCCccccccCcceEEe
Confidence 99999998 9999999999876 899999999999999984445555555443
No 6
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=6.8e-32 Score=262.84 Aligned_cols=205 Identities=15% Similarity=0.220 Sum_probs=180.0
Q ss_pred EEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEEC
Q 016368 142 SLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDL 221 (390)
Q Consensus 142 ~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~ 221 (390)
.+..++.+|++||.... ...+.++.|||.+++|..+++|+.+|..+++++++++||++||... ..+++.||+
T Consensus 267 ~~~~~~~lyviGG~~~~--~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~------~~sve~ydp 338 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN--EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN------PTSVERWFH 338 (480)
T ss_pred eEEECCEEEEEcCCCCC--CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC------CCceEEEEC
Confidence 34477888888886443 4567899999999999999999999999999999999999999753 257899999
Q ss_pred CCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe
Q 016368 222 KSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE 301 (390)
Q Consensus 222 ~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~ 301 (390)
.+++ |+.+++|+.++. .+++++++|+||++||........++||+.+++|+.+++ ++.++..+++++ ++|+
T Consensus 339 ~~n~----W~~~~~l~~~r~---~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~-~~~~ 409 (480)
T PHA02790 339 GDAA----WVNMPSLLKPRC---NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALV-FGRR 409 (480)
T ss_pred CCCe----EEECCCCCCCCc---ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CCCccccceEEE-ECCE
Confidence 9999 999999998876 688999999999999764334567899999999999999 889999888887 9999
Q ss_pred EEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCC-----ceEEEEEcCCCCCcceEe
Q 016368 302 LYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENG-----ERIMVVDVLASPARAWLV 369 (390)
Q Consensus 302 lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~-----~~v~~~d~~~~~~~~W~~ 369 (390)
||++|| .+.+||+++++|+.+++|+.+|..+++++++|+||++||.. ..+.+||+.++ +|++
T Consensus 410 IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~---~W~~ 476 (480)
T PHA02790 410 LFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY---SWNI 476 (480)
T ss_pred EEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC---eEEe
Confidence 999998 57899999999999999999999999999999999998742 47899999988 8974
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5e-31 Score=247.14 Aligned_cols=243 Identities=16% Similarity=0.239 Sum_probs=185.0
Q ss_pred eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368 100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG 179 (390)
Q Consensus 100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~ 179 (390)
..+++||+.+++|..+++++..|+.. ..++.++++++.+|++||.... ...+++++||+.+++|+.+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~-----------~~~~~~~~~~~~iyv~GG~~~~--~~~~~v~~yd~~t~~W~~~ 116 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRIS-----------CLGVRMVAVGTKLYIFGGRDEK--REFSDFYSYDTVKNEWTFL 116 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCc-----------cCceEEEEECCEEEEECCCCCC--CccCcEEEEECCCCEEEEe
Confidence 46999999999999988765324321 0112677888899999987544 4578999999999999999
Q ss_pred CCC-----CCCCcceEEEEECCEEEEEeccCCCC---CCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE
Q 016368 180 PQL-----SIPRRWCAMGSVGGVVYVASGVGAHY---RGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF 251 (390)
Q Consensus 180 ~~~-----~~~r~~~~~~~~~~~lyv~GG~~~~~---~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~ 251 (390)
+++ |.+|..|++++++++|||+||..... .....+++++||+++++ |+.++.+......|..++++++
T Consensus 117 ~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~----W~~l~~~~~~~~~r~~~~~~~~ 192 (341)
T PLN02153 117 TKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK----WVQLPDPGENFEKRGGAGFAVV 192 (341)
T ss_pred ccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe----EeeCCCCCCCCCCCCcceEEEE
Confidence 877 78899999999999999999986421 11235789999999999 9999987644445557888999
Q ss_pred CCEEEEEcccCC----C------CceeEEEeCCCCCeEecCCC--CCCCCCCceEEEeeCCeEEEEeCCC----------
Q 016368 252 KGNLCMVNLKGN----G------AKDGAIYNVELDKWKEMPEG--MHAGWNGPAASTMNEEELYVVNEGK---------- 309 (390)
Q Consensus 252 ~g~lyv~gg~g~----~------~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~---------- 309 (390)
++++|++||... + ..++++||+++++|++++.. +|.+|..+++++ ++++||++||..
T Consensus 193 ~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 271 (341)
T PLN02153 193 QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGP 271 (341)
T ss_pred CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEE-ECCEEEEECcccCCcccccccc
Confidence 999999986421 1 24678999999999998742 567788888887 999999999952
Q ss_pred ----CcEEEEECCCCceEEccc-----ccccccceeE-EEE-CCEEEEEeeCC------ceEEEEEcC
Q 016368 310 ----GRLSKYDADHDWWDEVIE-----LAELKGAEKI-TAA-RGRVCAVCENG------ERIMVVDVL 360 (390)
Q Consensus 310 ----~~v~~yd~~~~~W~~i~~-----~p~~r~~~~~-~~~-~g~l~i~g~~~------~~v~~~d~~ 360 (390)
+++++||+++++|+++.. +|..+..++. .+. +++|||+|+.. .+++.|++.
T Consensus 272 ~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 272 GTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred ccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 279999999999999863 3333333333 333 45899998652 367777654
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.7e-30 Score=252.48 Aligned_cols=242 Identities=16% Similarity=0.208 Sum_probs=191.7
Q ss_pred eEEEEeCCC----CCceeCCCC---CCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCC
Q 016368 101 EFFCFDPIS----STWNPLPAP---PQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQS 173 (390)
Q Consensus 101 ~~~~~d~~~----~~W~~l~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t 173 (390)
..+.+++.+ ++|..++++ |. ||.. +.++.+.+.+|++||.........+++++||+.+
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~-pR~~--------------h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~ 202 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPG-LRCS--------------HGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLET 202 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCC-Cccc--------------cEEEEECCEEEEECCcCCCCCCeeCcEEEEECCC
Confidence 456667755 899998763 44 5543 1677778888888886433223447899999999
Q ss_pred CceecCCCC---CC-CCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEE
Q 016368 174 NTWFFGPQL---SI-PRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAV 249 (390)
Q Consensus 174 ~~W~~~~~~---~~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~ 249 (390)
++|..++++ |. .|..+++++++++|||+||... ....+++++||+.+++ |++++++...+.+|..++++
T Consensus 203 ~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~---~~~~ndv~~yD~~t~~----W~~l~~~~~~P~~R~~h~~~ 275 (470)
T PLN02193 203 RTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA---SRQYNGFYSFDTTTNE----WKLLTPVEEGPTPRSFHSMA 275 (470)
T ss_pred CEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCC---CCCCccEEEEECCCCE----EEEcCcCCCCCCCccceEEE
Confidence 999987653 33 3568889999999999999875 3467899999999999 99999884333334478899
Q ss_pred EECCEEEEEcccCC--CCceeEEEeCCCCCeEecCCC--CCCCCCCceEEEeeCCeEEEEeCCC----CcEEEEECCCCc
Q 016368 250 GFKGNLCMVNLKGN--GAKDGAIYNVELDKWKEMPEG--MHAGWNGPAASTMNEEELYVVNEGK----GRLSKYDADHDW 321 (390)
Q Consensus 250 ~~~g~lyv~gg~g~--~~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~----~~v~~yd~~~~~ 321 (390)
..+++||++||... ...+.++||+.+++|+.++.. ++.+|.++.+++ ++++||++||.+ .++++||+++++
T Consensus 276 ~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 276 ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCE
Confidence 99999999997632 235678999999999998752 456777888887 999999999965 389999999999
Q ss_pred eEEcccc---cccccceeEEEECCEEEEEeeCC--------------ceEEEEEcCCCCCcceE
Q 016368 322 WDEVIEL---AELKGAEKITAARGRVCAVCENG--------------ERIMVVDVLASPARAWL 368 (390)
Q Consensus 322 W~~i~~~---p~~r~~~~~~~~~g~l~i~g~~~--------------~~v~~~d~~~~~~~~W~ 368 (390)
|+++..+ |.+|..+++++++++|||+|+.. +++++||+.+. +|+
T Consensus 355 W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~---~W~ 415 (470)
T PLN02193 355 WTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL---QWE 415 (470)
T ss_pred EEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC---EEE
Confidence 9999754 77888899999999999999742 36899999988 898
No 9
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=8.8e-31 Score=243.73 Aligned_cols=222 Identities=14% Similarity=0.199 Sum_probs=177.1
Q ss_pred eEEEEe-CCC-CCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCce--
Q 016368 101 EFFCFD-PIS-STWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTW-- 176 (390)
Q Consensus 101 ~~~~~d-~~~-~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W-- 176 (390)
.+++|+ +.. .+|..++++|. ++.. .+++++++.+|++||.... ...+++++||+.+++|
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~-~r~~--------------~~~~~~~~~lyviGG~~~~--~~~~~v~~~d~~~~~w~~ 102 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPY-EAAY--------------GASVSVENGIYYIGGSNSS--ERFSSVYRITLDESKEEL 102 (323)
T ss_pred eeEEEecCCCceeEEEcccCCc-cccc--------------eEEEEECCEEEEEcCCCCC--CCceeEEEEEEcCCceee
Confidence 467664 332 37999999988 6643 1667778999999987543 4578999999999988
Q ss_pred --ecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC-CCccccceEEEEECC
Q 016368 177 --FFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD-GRFSREAVEAVGFKG 253 (390)
Q Consensus 177 --~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~-~~~~r~~~~~~~~~g 253 (390)
+.++++|.+|..+++++++++|||+||... ....+++++||+++++ |+++++++. ++. .++++++++
T Consensus 103 ~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~~p~~~r~---~~~~~~~~~ 172 (323)
T TIGR03548 103 ICETIGNLPFTFENGSACYKDGTLYVGGGNRN---GKPSNKSYLFNLETQE----WFELPDFPGEPRV---QPVCVKLQN 172 (323)
T ss_pred eeeEcCCCCcCccCceEEEECCEEEEEeCcCC---CccCceEEEEcCCCCC----eeECCCCCCCCCC---cceEEEECC
Confidence 789999999999999999999999999754 3457899999999999 999998874 443 577788999
Q ss_pred EEEEEcccCC-CCceeEEEeCCCCCeEecCCCCC---CC--CCCceEEEeeCCeEEEEeCCC------------------
Q 016368 254 NLCMVNLKGN-GAKDGAIYNVELDKWKEMPEGMH---AG--WNGPAASTMNEEELYVVNEGK------------------ 309 (390)
Q Consensus 254 ~lyv~gg~g~-~~~~~~~yd~~~~~W~~~~~~~~---~~--~~~~~~~~~~~g~lyv~gg~~------------------ 309 (390)
+||++||... ...+.++||+++++|+.+++ ++ .+ +..++.++..+++||++||.+
T Consensus 173 ~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 251 (323)
T TIGR03548 173 ELYVFGGGSNIAYTDGYKYSPKKNQWQKVAD-PTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDES 251 (323)
T ss_pred EEEEEcCCCCccccceEEEecCCCeeEECCC-CCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchh
Confidence 9999987532 22457899999999999986 32 22 223333332689999999965
Q ss_pred -------------------CcEEEEECCCCceEEccccc-ccccceeEEEECCEEEEEeeC
Q 016368 310 -------------------GRLSKYDADHDWWDEVIELA-ELKGAEKITAARGRVCAVCEN 350 (390)
Q Consensus 310 -------------------~~v~~yd~~~~~W~~i~~~p-~~r~~~~~~~~~g~l~i~g~~ 350 (390)
+.+++||+.+++|+.++++| ..|..+++++++++||++|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 252 LKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred hhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence 35999999999999999887 478888899999999999864
No 10
>PHA02713 hypothetical protein; Provisional
Probab=99.98 E-value=2.6e-30 Score=255.25 Aligned_cols=197 Identities=12% Similarity=0.208 Sum_probs=171.2
Q ss_pred CCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368 163 LASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS 242 (390)
Q Consensus 163 ~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~ 242 (390)
...+++|||.+++|..+++||.+|..+++++++++||++||.... ....+++++||+.++. |..+++|+.++.
T Consensus 271 ~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~--~~~~~~v~~Yd~~~n~----W~~~~~m~~~R~- 343 (557)
T PHA02713 271 NPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFN--NPSLNKVYKINIENKI----HVELPPMIKNRC- 343 (557)
T ss_pred CCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCC--CCccceEEEEECCCCe----EeeCCCCcchhh-
Confidence 357899999999999999999999999999999999999997531 3457899999999999 999999998876
Q ss_pred ccceEEEEECCEEEEEcccCC--CCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC-----------
Q 016368 243 REAVEAVGFKGNLCMVNLKGN--GAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK----------- 309 (390)
Q Consensus 243 r~~~~~~~~~g~lyv~gg~g~--~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~----------- 309 (390)
.+++++++|+||++||... ...++++||+.+++|+.+++ ++.++..+++++ ++|+||++||.+
T Consensus 344 --~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~-~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 344 --RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD-MPIALSSYGMCV-LDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred --ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC-CCcccccccEEE-ECCEEEEEeCCCccccccccccc
Confidence 6889999999999997632 23568999999999999999 999999998887 999999999964
Q ss_pred ------------CcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCC------ceEEEEEcCC-CCCcceEe-
Q 016368 310 ------------GRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENG------ERIMVVDVLA-SPARAWLV- 369 (390)
Q Consensus 310 ------------~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~------~~v~~~d~~~-~~~~~W~~- 369 (390)
..+++|||++++|+.+++|+.+|..+++++++|+||++||.. ..+..||+.+ + +|+.
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~---~W~~~ 496 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN---GWELI 496 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCC---CeeEc
Confidence 258999999999999999999999999999999999998642 2467899987 6 8983
Q ss_pred -cCCC
Q 016368 370 -DPPR 373 (390)
Q Consensus 370 -~~p~ 373 (390)
.+|.
T Consensus 497 ~~m~~ 501 (557)
T PHA02713 497 TTTES 501 (557)
T ss_pred cccCc
Confidence 3543
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=1.1e-29 Score=238.75 Aligned_cols=228 Identities=14% Similarity=0.182 Sum_probs=174.2
Q ss_pred eeEEEEeC--CCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCC----CCCCCCcEEEeCCC
Q 016368 100 MEFFCFDP--ISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHF----LPALASPLAFNPQS 173 (390)
Q Consensus 100 ~~~~~~d~--~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~----~~~~~~~~~~dp~t 173 (390)
..+++||+ .+++|..++++|..+|.. +.++++++.+|++||..... ...++++++|||.+
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~--------------~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~ 94 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQ--------------AVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK 94 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCccc--------------ceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence 35788885 678999999998425543 16778889999999974321 12467899999999
Q ss_pred CceecCC-CCCCCCcceEEE-EECCEEEEEeccCCCC-----------C--------------------CCccCeEEEEE
Q 016368 174 NTWFFGP-QLSIPRRWCAMG-SVGGVVYVASGVGAHY-----------R--------------------GDVARSMKKWD 220 (390)
Q Consensus 174 ~~W~~~~-~~~~~r~~~~~~-~~~~~lyv~GG~~~~~-----------~--------------------~~~~~~~~~yd 220 (390)
++|+.++ +++.+|..++++ +++++||++||..... + ....+.+++||
T Consensus 95 ~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YD 174 (346)
T TIGR03547 95 NSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYD 174 (346)
T ss_pred CEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEE
Confidence 9999997 456667777666 6899999999985310 0 00137899999
Q ss_pred CCCCccccccEEcccCCC-CCccccceEEEEECCEEEEEcccCCCC---ceeEEEe--CCCCCeEecCCCCCCCCC----
Q 016368 221 LKSDREDWKWEKKAQLKD-GRFSREAVEAVGFKGNLCMVNLKGNGA---KDGAIYN--VELDKWKEMPEGMHAGWN---- 290 (390)
Q Consensus 221 ~~t~~~~~~W~~~~~~~~-~~~~r~~~~~~~~~g~lyv~gg~g~~~---~~~~~yd--~~~~~W~~~~~~~~~~~~---- 290 (390)
+.+++ |+.+++||. ++. .+++++++++||++||..... ...++|| +++++|+.+++ ++.++.
T Consensus 175 p~t~~----W~~~~~~p~~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~-m~~~r~~~~~ 246 (346)
T TIGR03547 175 PSTNQ----WRNLGENPFLGTA---GSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP-LPPPKSSSQE 246 (346)
T ss_pred CCCCc----eeECccCCCCcCC---CceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC-CCCCCCCccc
Confidence 99999 999999985 344 578888999999999752211 2244555 56779999998 766542
Q ss_pred ---CceEEEeeCCeEEEEeCCC----------------------CcEEEEECCCCceEEcccccccccceeEEEECCEEE
Q 016368 291 ---GPAASTMNEEELYVVNEGK----------------------GRLSKYDADHDWWDEVIELAELKGAEKITAARGRVC 345 (390)
Q Consensus 291 ---~~~~~~~~~g~lyv~gg~~----------------------~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~ 345 (390)
++.+++ ++|+||++||.. ..+.+||+++++|+.+..||.+|..+++++++|+||
T Consensus 247 ~~~~~~a~~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iy 325 (346)
T TIGR03547 247 GLAGAFAGI-SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVL 325 (346)
T ss_pred cccEEeeeE-ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEE
Confidence 333455 899999999953 147899999999999999999988888888999999
Q ss_pred EEeeC
Q 016368 346 AVCEN 350 (390)
Q Consensus 346 i~g~~ 350 (390)
|+|+.
T Consensus 326 v~GG~ 330 (346)
T TIGR03547 326 LIGGE 330 (346)
T ss_pred EEecc
Confidence 99865
No 12
>PLN02193 nitrile-specifier protein
Probab=99.97 E-value=5.1e-29 Score=242.07 Aligned_cols=241 Identities=15% Similarity=0.248 Sum_probs=183.4
Q ss_pred eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368 100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG 179 (390)
Q Consensus 100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~ 179 (390)
..+++||+.+++|..++.....|+.. +..++++++.+.+|++||.... ...+++++||+.+++|+.+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~-----------~~~~~~v~~~~~lYvfGG~~~~--~~~ndv~~yD~~t~~W~~l 259 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLS-----------CLGVRMVSIGSTLYVFGGRDAS--RQYNGFYSFDTTTNEWKLL 259 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCc-----------ccceEEEEECCEEEEECCCCCC--CCCccEEEEECCCCEEEEc
Confidence 35999999999999877543212210 0012567778889998887543 4678999999999999999
Q ss_pred CCC---CCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEE
Q 016368 180 PQL---SIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLC 256 (390)
Q Consensus 180 ~~~---~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~ly 256 (390)
+++ |.+|..|++++++++|||+||... ....+++++||+.+++ |+.++........|..++++++++++|
T Consensus 260 ~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~---~~~~~~~~~yd~~t~~----W~~~~~~~~~~~~R~~~~~~~~~gkiy 332 (470)
T PLN02193 260 TPVEEGPTPRSFHSMAADEENVYVFGGVSA---TARLKTLDSYNIVDKK----WFHCSTPGDSFSIRGGAGLEVVQGKVW 332 (470)
T ss_pred CcCCCCCCCccceEEEEECCEEEEECCCCC---CCCcceEEEEECCCCE----EEeCCCCCCCCCCCCCcEEEEECCcEE
Confidence 888 789999999999999999999875 4456789999999999 999876332223344688889999999
Q ss_pred EEcccC-CCCceeEEEeCCCCCeEecCCC--CCCCCCCceEEEeeCCeEEEEeCCC--------------CcEEEEECCC
Q 016368 257 MVNLKG-NGAKDGAIYNVELDKWKEMPEG--MHAGWNGPAASTMNEEELYVVNEGK--------------GRLSKYDADH 319 (390)
Q Consensus 257 v~gg~g-~~~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~--------------~~v~~yd~~~ 319 (390)
++||.. ....++++||+++++|+.++.. .|.+|..+++++ ++++||++||.. ++++.||+.+
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET 411 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCEEEEECCccCCccccccCccceeccEEEEEcCc
Confidence 998752 2236788999999999998752 467788888887 999999999953 2699999999
Q ss_pred CceEEcccc------cccccceeE--EEE--CCEEEEEeeCC------ceEEEEEcCC
Q 016368 320 DWWDEVIEL------AELKGAEKI--TAA--RGRVCAVCENG------ERIMVVDVLA 361 (390)
Q Consensus 320 ~~W~~i~~~------p~~r~~~~~--~~~--~g~l~i~g~~~------~~v~~~d~~~ 361 (390)
++|+++..+ |.+|..+++ ..+ ++.|+++|+.. +++|.+++.+
T Consensus 412 ~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 412 LQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 999998754 345654432 223 34599998652 3778777653
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=3.9e-29 Score=236.94 Aligned_cols=239 Identities=15% Similarity=0.203 Sum_probs=180.2
Q ss_pred eEEEEeCC--CCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCC----CCCCCCcEEEeCCCC
Q 016368 101 EFFCFDPI--SSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHF----LPALASPLAFNPQSN 174 (390)
Q Consensus 101 ~~~~~d~~--~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~----~~~~~~~~~~dp~t~ 174 (390)
.++.||+. +++|..++++|..+|.. +.++++++.+|++||..... ....+++++||+.++
T Consensus 51 ~~~~~d~~~~~~~W~~l~~~p~~~r~~--------------~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 51 SWYKLDLNAPSKGWTKIAAFPGGPREQ--------------AVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred eEEEEECCCCCCCeEECCcCCCCCccc--------------ceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 47788876 47899999887535532 16777888999999875311 124678999999999
Q ss_pred ceecCCC-CCCCCcceEEEE-ECCEEEEEeccCCCC-------------------------------CCCccCeEEEEEC
Q 016368 175 TWFFGPQ-LSIPRRWCAMGS-VGGVVYVASGVGAHY-------------------------------RGDVARSMKKWDL 221 (390)
Q Consensus 175 ~W~~~~~-~~~~r~~~~~~~-~~~~lyv~GG~~~~~-------------------------------~~~~~~~~~~yd~ 221 (390)
+|+.+++ ++.++.+|++++ .+++||++||..... .....+.+++||+
T Consensus 117 ~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~ 196 (376)
T PRK14131 117 SWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDP 196 (376)
T ss_pred EEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEEC
Confidence 9999985 466677777766 799999999975310 0012478999999
Q ss_pred CCCccccccEEcccCCC-CCccccceEEEEECCEEEEEcccCC-CCcee----EEEeCCCCCeEecCCCCCCCCCC----
Q 016368 222 KSDREDWKWEKKAQLKD-GRFSREAVEAVGFKGNLCMVNLKGN-GAKDG----AIYNVELDKWKEMPEGMHAGWNG---- 291 (390)
Q Consensus 222 ~t~~~~~~W~~~~~~~~-~~~~r~~~~~~~~~g~lyv~gg~g~-~~~~~----~~yd~~~~~W~~~~~~~~~~~~~---- 291 (390)
.+++ |+.++++|. ++. .++++.++++||++||... +.... ..||+++++|+.++. ++.++..
T Consensus 197 ~t~~----W~~~~~~p~~~~~---~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~p~~~~~~~~~ 268 (376)
T PRK14131 197 STNQ----WKNAGESPFLGTA---GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD-LPPAPGGSSQE 268 (376)
T ss_pred CCCe----eeECCcCCCCCCC---cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC-CCCCCcCCcCC
Confidence 9999 999999885 444 5788889999999997521 11222 246788999999998 7665532
Q ss_pred ----ceEEEeeCCeEEEEeCCCC----------------------cEEEEECCCCceEEcccccccccceeEEEECCEEE
Q 016368 292 ----PAASTMNEEELYVVNEGKG----------------------RLSKYDADHDWWDEVIELAELKGAEKITAARGRVC 345 (390)
Q Consensus 292 ----~~~~~~~~g~lyv~gg~~~----------------------~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~ 345 (390)
+.+++ ++++||++||.+. .+.+||+++++|+.+..||.+|..+++++++|+||
T Consensus 269 ~~~~~~a~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iy 347 (376)
T PRK14131 269 GVAGAFAGY-SNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVL 347 (376)
T ss_pred ccceEecee-ECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEE
Confidence 12344 8999999999531 35689999999999999999998888889999999
Q ss_pred EEeeCC------ceEEEEEcCCC
Q 016368 346 AVCENG------ERIMVVDVLAS 362 (390)
Q Consensus 346 i~g~~~------~~v~~~d~~~~ 362 (390)
|+|+.. ++|+.|++.++
T Consensus 348 v~GG~~~~~~~~~~v~~~~~~~~ 370 (376)
T PRK14131 348 LIGGETAGGKAVSDVTLLSWDGK 370 (376)
T ss_pred EEcCCCCCCcEeeeEEEEEEcCC
Confidence 999652 27788887765
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=2.6e-29 Score=244.74 Aligned_cols=187 Identities=18% Similarity=0.275 Sum_probs=163.9
Q ss_pred eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368 100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG 179 (390)
Q Consensus 100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~ 179 (390)
..+++|||.+++|..+++++. +|.. +.++++++.+|++||... .+.+++|||.+++|..+
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~-~r~~--------------~~~v~~~~~iYviGG~~~-----~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNS-PRLY--------------ASGVPANNKLYVVGGLPN-----PTSVERWFHGDAAWVNM 346 (480)
T ss_pred CeEEEEECCCCEEEECCCCCc-hhhc--------------ceEEEECCEEEEECCcCC-----CCceEEEECCCCeEEEC
Confidence 458899999999999999988 7753 167778899999998632 25789999999999999
Q ss_pred CCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEc
Q 016368 180 PQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVN 259 (390)
Q Consensus 180 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~g 259 (390)
++|+.+|..+++++++|+||++||... ..+.+++|||.+++ |+.+++|+.++. .+++++++|+||++|
T Consensus 347 ~~l~~~r~~~~~~~~~g~IYviGG~~~-----~~~~ve~ydp~~~~----W~~~~~m~~~r~---~~~~~~~~~~IYv~G 414 (480)
T PHA02790 347 PSLLKPRCNPAVASINNVIYVIGGHSE-----TDTTTEYLLPNHDQ----WQFGPSTYYPHY---KSCALVFGRRLFLVG 414 (480)
T ss_pred CCCCCCCcccEEEEECCEEEEecCcCC-----CCccEEEEeCCCCE----EEeCCCCCCccc---cceEEEECCEEEEEC
Confidence 999999999999999999999999864 23679999999999 999999998877 578889999999997
Q ss_pred ccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC-----CcEEEEECCCCceEEcc
Q 016368 260 LKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK-----GRLSKYDADHDWWDEVI 326 (390)
Q Consensus 260 g~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~-----~~v~~yd~~~~~W~~i~ 326 (390)
| ..++||+++++|+.+++ ++.+|..+++++ ++|+||++||.+ ..+++||+++++|+...
T Consensus 415 G------~~e~ydp~~~~W~~~~~-m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 415 R------NAEFYCESSNTWTLIDD-PIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred C------ceEEecCCCCcEeEcCC-CCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 3 26899999999999998 889999999998 999999999964 37999999999998754
No 15
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=6.5e-29 Score=246.82 Aligned_cols=207 Identities=18% Similarity=0.353 Sum_probs=176.7
Q ss_pred eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368 100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG 179 (390)
Q Consensus 100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~ 179 (390)
..++.||+.+++|..+++++. +|.. +++++.++.+|++||.... ...+++++|||.+++|+.+
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~-~R~~--------------~~~~~~~~~lyv~GG~~~~--~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIY-PRKN--------------PGVTVFNNRIYVIGGIYNS--ISLNTVESWKPGESKWREE 373 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCc-cccc--------------ceEEEECCEEEEEeCCCCC--EecceEEEEcCCCCceeeC
Confidence 468999999999999999987 6643 1777788899999987633 4678899999999999999
Q ss_pred CCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEc
Q 016368 180 PQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVN 259 (390)
Q Consensus 180 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~g 259 (390)
+++|.+|..+++++++++||++||.... ....+++++||+.+++ |+.++++|.++. .++++..++++|++|
T Consensus 374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~v~~yd~~t~~----W~~~~~~p~~r~---~~~~~~~~~~iyv~G 444 (534)
T PHA03098 374 PPLIFPRYNPCVVNVNNLIYVIGGISKN--DELLKTVECFSLNTNK----WSKGSPLPISHY---GGCAIYHDGKIYVIG 444 (534)
T ss_pred CCcCcCCccceEEEECCEEEEECCcCCC--CcccceEEEEeCCCCe----eeecCCCCcccc---CceEEEECCEEEEEC
Confidence 9999999999999999999999997542 3457899999999999 999999998776 688889999999999
Q ss_pred ccCCC-----CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC-----CcEEEEECCCCceEEccccc
Q 016368 260 LKGNG-----AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK-----GRLSKYDADHDWWDEVIELA 329 (390)
Q Consensus 260 g~g~~-----~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~-----~~v~~yd~~~~~W~~i~~~p 329 (390)
|.... ....++||+++++|+.++. ++.++..+++++ .+|+||++||.. +.+++||+++++|..++.+|
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSS-LNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCC-CCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence 76321 2347899999999999998 778888888887 899999999964 38999999999999999877
Q ss_pred ccccc
Q 016368 330 ELKGA 334 (390)
Q Consensus 330 ~~r~~ 334 (390)
+....
T Consensus 523 ~~~~~ 527 (534)
T PHA03098 523 KVIGS 527 (534)
T ss_pred ccccc
Confidence 65443
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=4.8e-28 Score=227.69 Aligned_cols=216 Identities=16% Similarity=0.246 Sum_probs=164.8
Q ss_pred eEEeecCeEEEEEeecCCCCCCCCCcEEEeC--CCCceecCCCCC-CCCcceEEEEECCEEEEEeccCCCC---CCCccC
Q 016368 141 QSLGVRNNLVLIAATTPHFLPALASPLAFNP--QSNTWFFGPQLS-IPRRWCAMGSVGGVVYVASGVGAHY---RGDVAR 214 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp--~t~~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~~---~~~~~~ 214 (390)
.++++++.+|++||.. .+++++||+ .+++|..+++|| .+|..+++++++++|||+||..... .....+
T Consensus 12 ~~~~~~~~vyv~GG~~------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 12 TGAIIGDKVYVGLGSA------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred eEEEECCEEEEEcccc------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecc
Confidence 5557788888888752 257899996 678999999998 5899999999999999999985421 012467
Q ss_pred eEEEEECCCCccccccEEccc-CCCCCccccceEEE-EECCEEEEEcccCCC----------------------------
Q 016368 215 SMKKWDLKSDREDWKWEKKAQ-LKDGRFSREAVEAV-GFKGNLCMVNLKGNG---------------------------- 264 (390)
Q Consensus 215 ~~~~yd~~t~~~~~~W~~~~~-~~~~~~~r~~~~~~-~~~g~lyv~gg~g~~---------------------------- 264 (390)
++++||+.+++ |+.++. ++..+. +++++ +++++||++||....
T Consensus 86 ~v~~Yd~~~~~----W~~~~~~~p~~~~---~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T TIGR03547 86 DVYRYDPKKNS----WQKLDTRSPVGLL---GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFS 158 (346)
T ss_pred cEEEEECCCCE----EecCCCCCCCccc---ceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhC
Confidence 89999999999 999973 444443 45555 689999999976311
Q ss_pred --------CceeEEEeCCCCCeEecCCCCCC-CCCCceEEEeeCCeEEEEeCCCC------cEEEEE--CCCCceEEccc
Q 016368 265 --------AKDGAIYNVELDKWKEMPEGMHA-GWNGPAASTMNEEELYVVNEGKG------RLSKYD--ADHDWWDEVIE 327 (390)
Q Consensus 265 --------~~~~~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~g~lyv~gg~~~------~v~~yd--~~~~~W~~i~~ 327 (390)
...+++||+.+++|+.+++ ++. ++..+++++ ++++||++||... .++.|| +++++|++++.
T Consensus 159 ~~~~~~~~~~~v~~YDp~t~~W~~~~~-~p~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 159 QPPEDYFWNKNVLSYDPSTNQWRNLGE-NPFLGTAGSAIVH-KGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred CChhHcCccceEEEEECCCCceeECcc-CCCCcCCCceEEE-ECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 1568899999999999998 765 577777777 9999999999532 455565 56779999999
Q ss_pred cccccc-------ceeEEEECCEEEEEeeCC----------------------ceEEEEEcCCCCCcceEe--cCCCC
Q 016368 328 LAELKG-------AEKITAARGRVCAVCENG----------------------ERIMVVDVLASPARAWLV--DPPRG 374 (390)
Q Consensus 328 ~p~~r~-------~~~~~~~~g~l~i~g~~~----------------------~~v~~~d~~~~~~~~W~~--~~p~g 374 (390)
||.+|. .+.+++++|+|||+|+.. ..+.+||+.+. +|+. .+|..
T Consensus 237 m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~lp~~ 311 (346)
T TIGR03547 237 LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG---KWSKVGKLPQG 311 (346)
T ss_pred CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC---cccccCCCCCC
Confidence 987642 344677899999998742 14678888766 8983 35543
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=5e-28 Score=225.25 Aligned_cols=214 Identities=17% Similarity=0.208 Sum_probs=169.9
Q ss_pred eEEeecCeEEEEEeecCCC--------CCCCCCcEEEe-CCC-CceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCC
Q 016368 141 QSLGVRNNLVLIAATTPHF--------LPALASPLAFN-PQS-NTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRG 210 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~--------~~~~~~~~~~d-p~t-~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~ 210 (390)
.++++++.||++||.+... ....+++++|+ +.. .+|..+++||.+|.++++++++++||++||... .
T Consensus 8 ~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~---~ 84 (323)
T TIGR03548 8 YAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNS---S 84 (323)
T ss_pred eeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCC---C
Confidence 5677888999999976532 12345788885 432 379999999999998989999999999999875 4
Q ss_pred CccCeEEEEECCCCcccccc----EEcccCCCCCccccceEEEEECCEEEEEcccC--CCCceeEEEeCCCCCeEecCCC
Q 016368 211 DVARSMKKWDLKSDREDWKW----EKKAQLKDGRFSREAVEAVGFKGNLCMVNLKG--NGAKDGAIYNVELDKWKEMPEG 284 (390)
Q Consensus 211 ~~~~~~~~yd~~t~~~~~~W----~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g--~~~~~~~~yd~~~~~W~~~~~~ 284 (390)
...+++++||+.++. | +.++++|.++. .+++++++++||++||.. ....+.++||+.+++|+++++
T Consensus 85 ~~~~~v~~~d~~~~~----w~~~~~~~~~lp~~~~---~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~- 156 (323)
T TIGR03548 85 ERFSSVYRITLDESK----EELICETIGNLPFTFE---NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD- 156 (323)
T ss_pred CCceeEEEEEEcCCc----eeeeeeEcCCCCcCcc---CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC-
Confidence 457899999999998 7 78888988766 588889999999999752 224578899999999999987
Q ss_pred CC-CCCCCceEEEeeCCeEEEEeCCCC----cEEEEECCCCceEEccccc---ccc--c-ceeEEEECCEEEEEeeCC--
Q 016368 285 MH-AGWNGPAASTMNEEELYVVNEGKG----RLSKYDADHDWWDEVIELA---ELK--G-AEKITAARGRVCAVCENG-- 351 (390)
Q Consensus 285 ~~-~~~~~~~~~~~~~g~lyv~gg~~~----~v~~yd~~~~~W~~i~~~p---~~r--~-~~~~~~~~g~l~i~g~~~-- 351 (390)
++ .+|..+.+++ ++++||++||.++ ++++||+++++|++++.++ .++ . ..++++.+++|||+|+..
T Consensus 157 ~p~~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~ 235 (323)
T TIGR03548 157 FPGEPRVQPVCVK-LQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKD 235 (323)
T ss_pred CCCCCCCcceEEE-ECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHH
Confidence 55 4677777776 9999999999754 6789999999999998764 222 2 233445589999998653
Q ss_pred -----------------------------------ceEEEEEcCCCCCcceEe
Q 016368 352 -----------------------------------ERIMVVDVLASPARAWLV 369 (390)
Q Consensus 352 -----------------------------------~~v~~~d~~~~~~~~W~~ 369 (390)
+++++||+.+. +|+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~ 285 (323)
T TIGR03548 236 VYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG---KWKS 285 (323)
T ss_pred HHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC---eeeE
Confidence 46999999998 8984
No 18
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=1e-28 Score=208.55 Aligned_cols=244 Identities=12% Similarity=0.215 Sum_probs=196.9
Q ss_pred CCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCce
Q 016368 97 NSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTW 176 (390)
Q Consensus 97 ~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W 176 (390)
.....++++|..+-+|..+|+--...... ...|.....+|+...+...+++|+.||.+... ...|.++.|||.+++|
T Consensus 41 ~~piDVH~lNa~~~RWtk~pp~~~ka~i~--~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~e-gaCN~Ly~fDp~t~~W 117 (392)
T KOG4693|consen 41 KDPIDVHVLNAENYRWTKMPPGITKATIE--SPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDE-GACNLLYEFDPETNVW 117 (392)
T ss_pred CCcceeEEeeccceeEEecCccccccccc--CCCCccchhhcCceEEEEcceEEEEcCccCcc-cccceeeeeccccccc
Confidence 45578999999999999998621101111 11223344677778999999999999987643 6788999999999999
Q ss_pred ecC---CCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECC
Q 016368 177 FFG---PQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKG 253 (390)
Q Consensus 177 ~~~---~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g 253 (390)
.+. .-+|.+|.+|+++++++.+|+|||+.+. .+...+++.++|..|.+ |+.+.....+..-|..|+++++++
T Consensus 118 ~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~-a~~FS~d~h~ld~~Tmt----Wr~~~Tkg~PprwRDFH~a~~~~~ 192 (392)
T KOG4693|consen 118 KKPEVEGFVPGARDGHSACVWGNQMYIFGGYEED-AQRFSQDTHVLDFATMT----WREMHTKGDPPRWRDFHTASVIDG 192 (392)
T ss_pred cccceeeecCCccCCceeeEECcEEEEecChHHH-HHhhhccceeEecccee----eeehhccCCCchhhhhhhhhhccc
Confidence 875 3568899999999999999999999753 24577899999999999 999987766655566799999999
Q ss_pred EEEEEcccCCC-----------CceeEEEeCCCCCeEecCCC--CCCCCCCceEEEeeCCeEEEEeCCCC-------cEE
Q 016368 254 NLCMVNLKGNG-----------AKDGAIYNVELDKWKEMPEG--MHAGWNGPAASTMNEEELYVVNEGKG-------RLS 313 (390)
Q Consensus 254 ~lyv~gg~g~~-----------~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~~-------~v~ 313 (390)
.+||+||++.. ...+..+|+.++.|...+.. .|.+|..+++.+ .||+||+|||..+ ++|
T Consensus 193 ~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fv-Yng~~Y~FGGYng~ln~HfndLy 271 (392)
T KOG4693|consen 193 MMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFV-YNGKMYMFGGYNGTLNVHFNDLY 271 (392)
T ss_pred eEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEE-EcceEEEecccchhhhhhhccee
Confidence 99999987331 23445899999999987642 578888999998 9999999999776 899
Q ss_pred EEECCCCceEEcc---cccccccceeEEEECCEEEEEee
Q 016368 314 KYDADHDWWDEVI---ELAELKGAEKITAARGRVCAVCE 349 (390)
Q Consensus 314 ~yd~~~~~W~~i~---~~p~~r~~~~~~~~~g~l~i~g~ 349 (390)
.|||.+..|+.|. +-|..|...++++.++++|++|+
T Consensus 272 ~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGG 310 (392)
T KOG4693|consen 272 CFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGG 310 (392)
T ss_pred ecccccchheeeeccCCCCCcccceeEEEECCEEEEecC
Confidence 9999999999986 45667888888999999999984
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.95 E-value=3.3e-27 Score=199.53 Aligned_cols=225 Identities=13% Similarity=0.144 Sum_probs=180.8
Q ss_pred eEEeecCeEEEEEeecCCCC---CCCCCcEEEeCCCCceecCCC-------------CCCCCcceEEEEECCEEEEEecc
Q 016368 141 QSLGVRNNLVLIAATTPHFL---PALASPLAFNPQSNTWFFGPQ-------------LSIPRRWCAMGSVGGVVYVASGV 204 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~~---~~~~~~~~~dp~t~~W~~~~~-------------~~~~r~~~~~~~~~~~lyv~GG~ 204 (390)
+++++...+|-+||++.+.. ...-++.++|..+-+|.++|+ .|..|++|+.+.+++++|+.||.
T Consensus 18 AavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGR 97 (392)
T KOG4693|consen 18 AAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGR 97 (392)
T ss_pred eeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCc
Confidence 88899999999999875432 233468999999999999876 24569999999999999999999
Q ss_pred CCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEccc----CCCCceeEEEeCCCCCeEe
Q 016368 205 GAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLK----GNGAKDGAIYNVELDKWKE 280 (390)
Q Consensus 205 ~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~----g~~~~~~~~yd~~~~~W~~ 280 (390)
++. ....+.++.||++++. |.+..-...-+..|.+|++++.++.+||+||+ .....++.++|..+.+|++
T Consensus 98 ND~--egaCN~Ly~fDp~t~~----W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~ 171 (392)
T KOG4693|consen 98 NDD--EGACNLLYEFDPETNV----WKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWRE 171 (392)
T ss_pred cCc--ccccceeeeecccccc----ccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeee
Confidence 874 4567889999999999 99765433323334489999999999999987 2346778899999999999
Q ss_pred cCCC--CCCCCCCceEEEeeCCeEEEEeCCCC--------------cEEEEECCCCceEEccc---ccccccceeEEEEC
Q 016368 281 MPEG--MHAGWNGPAASTMNEEELYVVNEGKG--------------RLSKYDADHDWWDEVIE---LAELKGAEKITAAR 341 (390)
Q Consensus 281 ~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~~--------------~v~~yd~~~~~W~~i~~---~p~~r~~~~~~~~~ 341 (390)
+... +|.-|-.+++++ +++.||+|||... .+..+|..|..|...++ .|..|.+|++.+.+
T Consensus 172 ~~Tkg~PprwRDFH~a~~-~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYn 250 (392)
T KOG4693|consen 172 MHTKGDPPRWRDFHTASV-IDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYN 250 (392)
T ss_pred hhccCCCchhhhhhhhhh-ccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEc
Confidence 8752 333345677776 9999999999432 78899999999998864 45668899999999
Q ss_pred CEEEEEeeCC-------ceEEEEEcCCCCCcceEecCCCCe
Q 016368 342 GRVCAVCENG-------ERIMVVDVLASPARAWLVDPPRGF 375 (390)
Q Consensus 342 g~l~i~g~~~-------~~v~~~d~~~~~~~~W~~~~p~g~ 375 (390)
|++|++|+-+ ++++.+|+.+. .|.++.+.|.
T Consensus 251 g~~Y~FGGYng~ln~HfndLy~FdP~t~---~W~~I~~~Gk 288 (392)
T KOG4693|consen 251 GKMYMFGGYNGTLNVHFNDLYCFDPKTS---MWSVISVRGK 288 (392)
T ss_pred ceEEEecccchhhhhhhcceeecccccc---hheeeeccCC
Confidence 9999998653 48999999998 8998766554
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=3.7e-26 Score=216.66 Aligned_cols=225 Identities=18% Similarity=0.256 Sum_probs=168.6
Q ss_pred CceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCC--CCceecCCCCC-CCCc
Q 016368 111 TWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQ--SNTWFFGPQLS-IPRR 187 (390)
Q Consensus 111 ~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~--t~~W~~~~~~~-~~r~ 187 (390)
.+..++++|. ++.. ..++.+++.+|++||.. .+.+++||+. +++|..++++| .+|.
T Consensus 18 ~~~~l~~lP~-~~~~--------------~~~~~~~~~iyv~gG~~------~~~~~~~d~~~~~~~W~~l~~~p~~~r~ 76 (376)
T PRK14131 18 NAEQLPDLPV-PFKN--------------GTGAIDNNTVYVGLGSA------GTSWYKLDLNAPSKGWTKIAAFPGGPRE 76 (376)
T ss_pred ecccCCCCCc-CccC--------------CeEEEECCEEEEEeCCC------CCeEEEEECCCCCCCeEECCcCCCCCcc
Confidence 3667788887 6532 15666778888887752 2458899986 47999999997 5899
Q ss_pred ceEEEEECCEEEEEeccCCC-C--CCCccCeEEEEECCCCccccccEEcccC-CCCCccccceEEEE-ECCEEEEEcccC
Q 016368 188 WCAMGSVGGVVYVASGVGAH-Y--RGDVARSMKKWDLKSDREDWKWEKKAQL-KDGRFSREAVEAVG-FKGNLCMVNLKG 262 (390)
Q Consensus 188 ~~~~~~~~~~lyv~GG~~~~-~--~~~~~~~~~~yd~~t~~~~~~W~~~~~~-~~~~~~r~~~~~~~-~~g~lyv~gg~g 262 (390)
.+++++++++|||+||.... . .....+++++||+.+++ |+.++.+ |..+. ++++++ .+++||++||..
T Consensus 77 ~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~----W~~~~~~~p~~~~---~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 77 QAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS----WQKLDTRSPVGLA---GHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE----EEeCCCCCCCccc---ceEEEEeeCCEEEEECCCC
Confidence 99999999999999998641 0 01346789999999999 9999863 44433 466665 899999999753
Q ss_pred CC------------------------------------CceeEEEeCCCCCeEecCCCCCC-CCCCceEEEeeCCeEEEE
Q 016368 263 NG------------------------------------AKDGAIYNVELDKWKEMPEGMHA-GWNGPAASTMNEEELYVV 305 (390)
Q Consensus 263 ~~------------------------------------~~~~~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~g~lyv~ 305 (390)
.. ..++++||+.+++|+.+++ +|. ++..+++++ ++++||++
T Consensus 150 ~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~-~p~~~~~~~a~v~-~~~~iYv~ 227 (376)
T PRK14131 150 KNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE-SPFLGTAGSAVVI-KGNKLWLI 227 (376)
T ss_pred HHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc-CCCCCCCcceEEE-ECCEEEEE
Confidence 20 2467899999999999988 665 677777776 89999999
Q ss_pred eCCCC------cE--EEEECCCCceEEcccccccccc--------eeEEEECCEEEEEeeCC------------------
Q 016368 306 NEGKG------RL--SKYDADHDWWDEVIELAELKGA--------EKITAARGRVCAVCENG------------------ 351 (390)
Q Consensus 306 gg~~~------~v--~~yd~~~~~W~~i~~~p~~r~~--------~~~~~~~g~l~i~g~~~------------------ 351 (390)
||... .+ +.||+++++|+++..||.+|.. +.+++++++|||+|+.+
T Consensus 228 GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 307 (376)
T PRK14131 228 NGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEG 307 (376)
T ss_pred eeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccC
Confidence 99421 33 4567889999999999876531 22466799999998642
Q ss_pred ----ceEEEEEcCCCCCcceE
Q 016368 352 ----ERIMVVDVLASPARAWL 368 (390)
Q Consensus 352 ----~~v~~~d~~~~~~~~W~ 368 (390)
..+.+||+.+. +|+
T Consensus 308 ~~~~~~~e~yd~~~~---~W~ 325 (376)
T PRK14131 308 LKKSWSDEIYALVNG---KWQ 325 (376)
T ss_pred CcceeehheEEecCC---ccc
Confidence 13457888876 898
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.90 E-value=8e-22 Score=191.36 Aligned_cols=219 Identities=16% Similarity=0.227 Sum_probs=179.3
Q ss_pred eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCC---CCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEE
Q 016368 141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGP---QLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMK 217 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~---~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~ 217 (390)
.++...+.+|++||..........+++++|..+..|.... ..|.+|.+|+++.++.+||+|||.+.. ....++++
T Consensus 65 s~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~--~~~~~~l~ 142 (482)
T KOG0379|consen 65 SAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK--YRNLNELH 142 (482)
T ss_pred ceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC--CCChhheE
Confidence 6666688899988876553222226999999999998754 456899999999999999999999852 44578999
Q ss_pred EEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCC---CCceeEEEeCCCCCeEecCC--CCCCCCCCc
Q 016368 218 KWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGN---GAKDGAIYNVELDKWKEMPE--GMHAGWNGP 292 (390)
Q Consensus 218 ~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~---~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~ 292 (390)
.||+.|++ |+.+......+.+|.+|++++++.++||+||.+. ...+.++||+++.+|+++.. ..|.+|.+|
T Consensus 143 ~~d~~t~~----W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH 218 (482)
T KOG0379|consen 143 SLDLSTRT----WSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGH 218 (482)
T ss_pred eccCCCCc----EEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCc
Confidence 99999999 9998876665556668999999999999998743 24678899999999999763 267789999
Q ss_pred eEEEeeCCeEEEEeCCC-C-----cEEEEECCCCceEEcc---cccccccceeEEEECCEEEEEeeCCc-------eEEE
Q 016368 293 AASTMNEEELYVVNEGK-G-----RLSKYDADHDWWDEVI---ELAELKGAEKITAARGRVCAVCENGE-------RIMV 356 (390)
Q Consensus 293 ~~~~~~~g~lyv~gg~~-~-----~v~~yd~~~~~W~~i~---~~p~~r~~~~~~~~~g~l~i~g~~~~-------~v~~ 356 (390)
++++ .+++++++||.. + +++.+|..+.+|+++. ..|.+|..|.+++.+..++|+|++.. +++.
T Consensus 219 ~~~~-~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~ 297 (482)
T KOG0379|consen 219 AMVV-VGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYG 297 (482)
T ss_pred eEEE-ECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccccccccc
Confidence 9998 999999999966 3 9999999999999765 56788999999999999999986533 5677
Q ss_pred EEcCCCCCcceEe
Q 016368 357 VDVLASPARAWLV 369 (390)
Q Consensus 357 ~d~~~~~~~~W~~ 369 (390)
+|+.+. .|..
T Consensus 298 l~~~~~---~w~~ 307 (482)
T KOG0379|consen 298 LDLETL---VWSK 307 (482)
T ss_pred cccccc---ceee
Confidence 787755 7873
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=176.12 Aligned_cols=209 Identities=19% Similarity=0.310 Sum_probs=171.0
Q ss_pred eEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCC
Q 016368 101 EFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGP 180 (390)
Q Consensus 101 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~ 180 (390)
++++||..+..|.........|. .+++..++++.+.||++||.... ....++++.||+.|++|..+.
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~------------~r~g~~~~~~~~~l~lfGG~~~~-~~~~~~l~~~d~~t~~W~~l~ 155 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPS------------PRYGHSLSAVGDKLYLFGGTDKK-YRNLNELHSLDLSTRTWSLLS 155 (482)
T ss_pred eeEEeecCCcccccccccCCCCC------------cccceeEEEECCeEEEEccccCC-CCChhheEeccCCCCcEEEec
Confidence 69999999999988654333221 12223777788899999988752 356899999999999998865
Q ss_pred C---CCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEE
Q 016368 181 Q---LSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCM 257 (390)
Q Consensus 181 ~---~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv 257 (390)
+ +|.+|.+|++++++.+||||||.... ....+++++||+.+.+ |.++......+.+|.+|++++.++++++
T Consensus 156 ~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~--~~~~ndl~i~d~~~~~----W~~~~~~g~~P~pR~gH~~~~~~~~~~v 229 (482)
T KOG0379|consen 156 PTGDPPPPRAGHSATVVGTKLVVFGGIGGT--GDSLNDLHIYDLETST----WSELDTQGEAPSPRYGHAMVVVGNKLLV 229 (482)
T ss_pred CcCCCCCCcccceEEEECCEEEEECCccCc--ccceeeeeeecccccc----ceecccCCCCCCCCCCceEEEECCeEEE
Confidence 4 57899999999999999999999874 4489999999999999 9999877666667779999999999999
Q ss_pred EcccCC---CCceeEEEeCCCCCeEecCC--CCCCCCCCceEEEeeCCeEEEEeCCCC-------cEEEEECCCCceEEc
Q 016368 258 VNLKGN---GAKDGAIYNVELDKWKEMPE--GMHAGWNGPAASTMNEEELYVVNEGKG-------RLSKYDADHDWWDEV 325 (390)
Q Consensus 258 ~gg~g~---~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~~~g~lyv~gg~~~-------~v~~yd~~~~~W~~i 325 (390)
+||... ...+.+.+|+.+.+|..+.. ..|.+|..+..++ .+.+++++||... +++.||.++..|.++
T Consensus 230 ~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~-~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~ 308 (482)
T KOG0379|consen 230 FGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTV-SGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKV 308 (482)
T ss_pred EeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEE-ECCEEEEEcCCcccccccccccccccccccceeee
Confidence 987642 34678899999999997653 3788999999997 9999999999533 689999999999998
Q ss_pred cccc
Q 016368 326 IELA 329 (390)
Q Consensus 326 ~~~p 329 (390)
....
T Consensus 309 ~~~~ 312 (482)
T KOG0379|consen 309 ESVG 312 (482)
T ss_pred eccc
Confidence 7555
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.85 E-value=4.7e-20 Score=165.07 Aligned_cols=215 Identities=15% Similarity=0.193 Sum_probs=166.2
Q ss_pred cCeEEEEEeecCC--CCCCCCCcEEEeCCCCceecC--CCCCCCCcceEEEEEC-CEEEEEeccCCCCCCC---ccCeEE
Q 016368 146 RNNLVLIAATTPH--FLPALASPLAFNPQSNTWFFG--PQLSIPRRWCAMGSVG-GVVYVASGVGAHYRGD---VARSMK 217 (390)
Q Consensus 146 ~~~l~~~gG~~~~--~~~~~~~~~~~dp~t~~W~~~--~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~---~~~~~~ 217 (390)
.+.|+++||...+ .....+++++||..+++|+.+ |..|.||+.|.++++. +.+|+|||.-....+. -..++|
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W 157 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW 157 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence 3478888875433 224668999999999999985 5667899999888885 8999999985543221 346899
Q ss_pred EEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCC------CCceeEEEeCCCCCeEecCCC--CCCCC
Q 016368 218 KWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGN------GAKDGAIYNVELDKWKEMPEG--MHAGW 289 (390)
Q Consensus 218 ~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~------~~~~~~~yd~~~~~W~~~~~~--~~~~~ 289 (390)
+||..+++ |+++.... .+.+|.+|-++....+|+++||.-. .-+++++||+.+-+|+++.+. .|.+|
T Consensus 158 ~fd~~trk----weql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpR 232 (521)
T KOG1230|consen 158 LFDLKTRK----WEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPR 232 (521)
T ss_pred eeeeccch----heeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCC
Confidence 99999999 99987643 2234458999999999999987511 125678999999999998764 47889
Q ss_pred CCceEEEeeCCeEEEEeCCCC--------------cEEEEECCC-----CceEEccc---ccccccceeEEEE-CCEEEE
Q 016368 290 NGPAASTMNEEELYVVNEGKG--------------RLSKYDADH-----DWWDEVIE---LAELKGAEKITAA-RGRVCA 346 (390)
Q Consensus 290 ~~~~~~~~~~g~lyv~gg~~~--------------~v~~yd~~~-----~~W~~i~~---~p~~r~~~~~~~~-~g~l~i 346 (390)
.++++.+...|.|||.||... ++|..+++. -.|.++.+ -|.+|.++++++. +++-+.
T Consensus 233 SGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~ 312 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALF 312 (521)
T ss_pred CcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEE
Confidence 999988845999999999542 899999988 56888764 3567999998887 668888
Q ss_pred EeeC--------------CceEEEEEcCCCCCcceE
Q 016368 347 VCEN--------------GERIMVVDVLASPARAWL 368 (390)
Q Consensus 347 ~g~~--------------~~~v~~~d~~~~~~~~W~ 368 (390)
+|+. .++++.||+..+ .|.
T Consensus 313 FGGV~D~eeeeEsl~g~F~NDLy~fdlt~n---rW~ 345 (521)
T KOG1230|consen 313 FGGVCDLEEEEESLSGEFFNDLYFFDLTRN---RWS 345 (521)
T ss_pred ecceecccccchhhhhhhhhhhhheecccc---hhh
Confidence 8843 247889998776 675
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=9.8e-20 Score=166.87 Aligned_cols=273 Identities=13% Similarity=0.125 Sum_probs=191.2
Q ss_pred hHHHhhcCCCCCC-----------cccEEEEeecCCCCCCCCCCcccCCC-ceeEEEEeCCCCCceeCC---CCCCCCCc
Q 016368 60 SWRRLLYSPYFPP-----------FFSLYALLFNNNKPSHNNNNYYSFNS-SMEFFCFDPISSTWNPLP---APPQNPPL 124 (390)
Q Consensus 60 ~W~~l~~s~~f~~-----------~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~W~~l~---~~p~~~~~ 124 (390)
|||++..+-.-.. .+.+.+|++++ ++ ...+++||..+++|..-. ..|. +..
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGN-------------EGiiDELHvYNTatnqWf~PavrGDiPp-gcA 83 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGN-------------EGIIDELHVYNTATNQWFAPAVRGDIPP-GCA 83 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCc-------------ccchhhhhhhccccceeecchhcCCCCC-chh
Confidence 7888877633222 34455555544 33 345999999999997632 3333 111
Q ss_pred ccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCC-------CCCCCcceEEEEECCE
Q 016368 125 RLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQ-------LSIPRRWCAMGSVGGV 197 (390)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~-------~~~~r~~~~~~~~~~~ 197 (390)
. +.+++.+.++|++||...-+ .+.|+++..-...=.|+++.+ +|.||-+|+...+++|
T Consensus 84 A--------------~GfvcdGtrilvFGGMvEYG-kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnK 148 (830)
T KOG4152|consen 84 A--------------FGFVCDGTRILVFGGMVEYG-KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNK 148 (830)
T ss_pred h--------------cceEecCceEEEEccEeeec-cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccE
Confidence 1 15566667888888875433 778888766655567788743 4678999999999999
Q ss_pred EEEEeccCCCCC------CCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE------CCEEEEEccc-CCC
Q 016368 198 VYVASGVGAHYR------GDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF------KGNLCMVNLK-GNG 264 (390)
Q Consensus 198 lyv~GG~~~~~~------~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~------~g~lyv~gg~-g~~ 264 (390)
.|+|||.....+ ..+++++++.++.-+..-..|...-.......+|..|.++.+ ..||||+||- |..
T Consensus 149 cYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R 228 (830)
T KOG4152|consen 149 CYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR 228 (830)
T ss_pred eEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc
Confidence 999999754321 246788888888755433448765433333334446888887 3479999864 445
Q ss_pred CceeEEEeCCCCCeEecCC--CCCCCCCCceEEEeeCCeEEEEeCCC-------------------CcEEEEECCCCceE
Q 016368 265 AKDGAIYNVELDKWKEMPE--GMHAGWNGPAASTMNEEELYVVNEGK-------------------GRLSKYDADHDWWD 323 (390)
Q Consensus 265 ~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~~~g~lyv~gg~~-------------------~~v~~yd~~~~~W~ 323 (390)
..+.+.+|+++-+|.+..- ..|.+|.-|++.+ ++++||||||+- ..+-.+|..++.|.
T Consensus 229 LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~-IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~ 307 (830)
T KOG4152|consen 229 LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATT-IGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWE 307 (830)
T ss_pred ccceeEEecceeecccccccCCCCCCccccccee-ecceeEEecceeeeeccccccccccceeeeccceeeeeecchhee
Confidence 5678899999999998653 2567888888888 999999999941 15667899999999
Q ss_pred Ecc-------cccccccceeEEEECCEEEEEeeCC------------ceEEEEEcCCC
Q 016368 324 EVI-------ELAELKGAEKITAARGRVCAVCENG------------ERIMVVDVLAS 362 (390)
Q Consensus 324 ~i~-------~~p~~r~~~~~~~~~g~l~i~g~~~------------~~v~~~d~~~~ 362 (390)
.+. .+|..|.+|+.++++.++||-++++ .++|.+|...+
T Consensus 308 tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekP 365 (830)
T KOG4152|consen 308 TLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKP 365 (830)
T ss_pred eeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCC
Confidence 874 4677888999999999999987552 25666665554
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.84 E-value=7.5e-20 Score=163.80 Aligned_cols=265 Identities=14% Similarity=0.126 Sum_probs=182.5
Q ss_pred CCCCCCcHHHHHHHHhcCC---c------hhhHhhhHhHHHhhcCCCCCCcccEEEEeecCCCCCCCCCCcccCCCceeE
Q 016368 32 LLLPGLPNHLADRCLSSLP---P------ALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSSMEF 102 (390)
Q Consensus 32 ~~~~~LP~dl~~~iL~rLP---l------~~~r~Vck~W~~l~~s~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (390)
.+.+.|-++.+.+|+..|. . .--.-.||.=-+|...|. ..-|+++++.- ++...+ --=+.+
T Consensus 31 kl~~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nPe---keELilfGGEf----~ngqkT---~vYndL 100 (521)
T KOG1230|consen 31 KLNEELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANPE---KEELILFGGEF----YNGQKT---HVYNDL 100 (521)
T ss_pred hcCcccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeeccC---cceeEEeccee----ecceeE---EEeeee
Confidence 3445676777888888776 0 001122333334444444 23445444322 000000 011358
Q ss_pred EEEeCCCCCceeCC--CCCCCCCcccccccccccccCCCceEEeec-CeEEEEEeecCC----CCCCCCCcEEEeCCCCc
Q 016368 103 FCFDPISSTWNPLP--APPQNPPLRLLYRHPSFLSRKLPVQSLGVR-NNLVLIAATTPH----FLPALASPLAFNPQSNT 175 (390)
Q Consensus 103 ~~~d~~~~~W~~l~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~gG~~~~----~~~~~~~~~~~dp~t~~ 175 (390)
+.||..+++|..+. ..|. ||..+ ++|++- +.++++||.... ......++|.||..+++
T Consensus 101 y~Yn~k~~eWkk~~spn~P~-pRssh--------------q~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trk 165 (521)
T KOG1230|consen 101 YSYNTKKNEWKKVVSPNAPP-PRSSH--------------QAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRK 165 (521)
T ss_pred eEEeccccceeEeccCCCcC-CCccc--------------eeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccch
Confidence 99999999999874 4455 56431 666665 556666664321 12466789999999999
Q ss_pred eecCC--CCCCCCcceEEEEECCEEEEEeccCCCC-CCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-
Q 016368 176 WFFGP--QLSIPRRWCAMGSVGGVVYVASGVGAHY-RGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF- 251 (390)
Q Consensus 176 W~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~- 251 (390)
|.++. .-|.+|++|.+++...+|++|||+.+.. +..+.+++++||+.|-+ |.++.+....+.+|.++..++.
T Consensus 166 weql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk----W~Klepsga~PtpRSGcq~~vtp 241 (521)
T KOG1230|consen 166 WEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK----WSKLEPSGAGPTPRSGCQFSVTP 241 (521)
T ss_pred heeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecccee----eeeccCCCCCCCCCCcceEEecC
Confidence 99874 4678999999999999999999986642 23578999999999999 9999875444455567887777
Q ss_pred CCEEEEEcccCC-----------CCceeEEEeCCC-----CCeEecCCC--CCCCCCCceEEEeeCCeEEEEeCCC----
Q 016368 252 KGNLCMVNLKGN-----------GAKDGAIYNVEL-----DKWKEMPEG--MHAGWNGPAASTMNEEELYVVNEGK---- 309 (390)
Q Consensus 252 ~g~lyv~gg~g~-----------~~~~~~~yd~~~-----~~W~~~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~---- 309 (390)
+|.||+.|||.. --.+.+.++++. -.|..+.+. .|.+|.+.++++..+++-+.|||.-
T Consensus 242 qg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~ee 321 (521)
T KOG1230|consen 242 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEE 321 (521)
T ss_pred CCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccc
Confidence 999999998721 123456778877 478887653 5788888888875788999999931
Q ss_pred ----------CcEEEEECCCCceEEc
Q 016368 310 ----------GRLSKYDADHDWWDEV 325 (390)
Q Consensus 310 ----------~~v~~yd~~~~~W~~i 325 (390)
++++.||...+.|.+.
T Consensus 322 eeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 322 EEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred cchhhhhhhhhhhhheecccchhhHh
Confidence 2899999999999875
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.74 E-value=5.8e-17 Score=148.88 Aligned_cols=198 Identities=13% Similarity=0.202 Sum_probs=146.3
Q ss_pred eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC---CCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEE
Q 016368 141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG---PQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMK 217 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~---~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~ 217 (390)
.++++..-++++||++.+ ..+.+.+||..+++|..- .+.|.+-+.|+.+..+.+||+|||.-+- +.+.+++
T Consensus 37 RAVaikELiviFGGGNEG---iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEY--GkYsNdL- 110 (830)
T KOG4152|consen 37 RAVAIKELIVIFGGGNEG---IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEY--GKYSNDL- 110 (830)
T ss_pred hheeeeeeEEEecCCccc---chhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeee--ccccchH-
Confidence 667777777777777654 578999999999999763 4567777778888889999999998653 4454444
Q ss_pred EEECCCCccccccEEcccC----CCCCccccceEEEEECCEEEEEcccCCCC-----------ceeEEEeCCCC----Ce
Q 016368 218 KWDLKSDREDWKWEKKAQL----KDGRFSREAVEAVGFKGNLCMVNLKGNGA-----------KDGAIYNVELD----KW 278 (390)
Q Consensus 218 ~yd~~t~~~~~~W~~~~~~----~~~~~~r~~~~~~~~~g~lyv~gg~g~~~-----------~~~~~yd~~~~----~W 278 (390)
|.++... |.|+++.+- ..+.++|-+|+.+.+++|.|+|||-.++. .+.++.++.-+ .|
T Consensus 111 -YELQasR--WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W 187 (830)
T KOG4152|consen 111 -YELQASR--WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAW 187 (830)
T ss_pred -HHhhhhh--hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEE
Confidence 5555444 558877542 23456667899999999999999753321 23345555432 58
Q ss_pred EecCC--CCCCCCCCceEEEee------CCeEEEEeCCCC----cEEEEECCCCceEEcc---cccccccceeEEEECCE
Q 016368 279 KEMPE--GMHAGWNGPAASTMN------EEELYVVNEGKG----RLSKYDADHDWWDEVI---ELAELKGAEKITAARGR 343 (390)
Q Consensus 279 ~~~~~--~~~~~~~~~~~~~~~------~g~lyv~gg~~~----~v~~yd~~~~~W~~i~---~~p~~r~~~~~~~~~g~ 343 (390)
..... ..|.+|..|.++. + ..+|||+||..| ++|..|.++..|.+.. ..|.+|.-|+...++++
T Consensus 188 ~ip~t~Gv~P~pRESHTAVi-Y~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnK 266 (830)
T KOG4152|consen 188 DIPITYGVLPPPRESHTAVI-YTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNK 266 (830)
T ss_pred ecccccCCCCCCcccceeEE-EEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeecce
Confidence 76432 2667788887776 3 458999999776 9999999999999875 45667889999999999
Q ss_pred EEEEe
Q 016368 344 VCAVC 348 (390)
Q Consensus 344 l~i~g 348 (390)
+||+|
T Consensus 267 MyvfG 271 (830)
T KOG4152|consen 267 MYVFG 271 (830)
T ss_pred eEEec
Confidence 99998
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.63 E-value=3.4e-14 Score=126.12 Aligned_cols=228 Identities=14% Similarity=0.185 Sum_probs=158.9
Q ss_pred ceeEEEEeCCC--CCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCC---CCCCCCcEEEeCCC
Q 016368 99 SMEFFCFDPIS--STWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHF---LPALASPLAFNPQS 173 (390)
Q Consensus 99 ~~~~~~~d~~~--~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~---~~~~~~~~~~dp~t 173 (390)
...++..|+.. ..|+++...|..+|... ..+++.+.||++||..... ....+++++|||.+
T Consensus 57 G~afy~ldL~~~~k~W~~~a~FpG~~rnqa--------------~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ 122 (381)
T COG3055 57 GTAFYVLDLKKPGKGWTKIADFPGGARNQA--------------VAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPST 122 (381)
T ss_pred CccceehhhhcCCCCceEcccCCCcccccc--------------hheeeCCeEEEeeccccCCCCCceEeeeeEEecCCC
Confidence 34577777754 68999999998666541 5566788999999875432 24678999999999
Q ss_pred CceecCCCC-CCCCcceEEEEECC-EEEEEeccCCCC-------------------------------CCCccCeEEEEE
Q 016368 174 NTWFFGPQL-SIPRRWCAMGSVGG-VVYVASGVGAHY-------------------------------RGDVARSMKKWD 220 (390)
Q Consensus 174 ~~W~~~~~~-~~~r~~~~~~~~~~-~lyv~GG~~~~~-------------------------------~~~~~~~~~~yd 220 (390)
++|+++... |..-..++++.+++ +||++||.+... +-.....+..||
T Consensus 123 nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~ 202 (381)
T COG3055 123 NSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYD 202 (381)
T ss_pred ChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccc
Confidence 999998653 45567788888877 999999975431 112345789999
Q ss_pred CCCCccccccEEcccCCCCCccccceEEEEECCEEEEEccc---CCCCceeEEEeCC--CCCeEecCCCCCCCCC-----
Q 016368 221 LKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLK---GNGAKDGAIYNVE--LDKWKEMPEGMHAGWN----- 290 (390)
Q Consensus 221 ~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~---g~~~~~~~~yd~~--~~~W~~~~~~~~~~~~----- 290 (390)
|+++. |+.+...|....+ +.+.+.-++++.++.|. |........++.. ..+|..+++ .|.+..
T Consensus 203 p~~n~----W~~~G~~pf~~~a--Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~-lp~~~~~~~eG 275 (381)
T COG3055 203 PSTNQ----WRNLGENPFYGNA--GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSD-LPAPIGSNKEG 275 (381)
T ss_pred cccch----hhhcCcCcccCcc--CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccC-CCCCCCCCccc
Confidence 99999 9999877654331 34444456768887654 2222223455554 458999877 333322
Q ss_pred --CceEEEeeCCeEEEEeCCCC------------------------cEEEEECCCCceEEcccccccccceeEEEECCEE
Q 016368 291 --GPAASTMNEEELYVVNEGKG------------------------RLSKYDADHDWWDEVIELAELKGAEKITAARGRV 344 (390)
Q Consensus 291 --~~~~~~~~~g~lyv~gg~~~------------------------~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l 344 (390)
++... -.++.+.|.||... +|+.|| .+.|+.+.+||........+..++.|
T Consensus 276 vAGaf~G-~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~v 352 (381)
T COG3055 276 VAGAFSG-KSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKV 352 (381)
T ss_pred cceeccc-eeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcE
Confidence 22222 36788888887321 788887 78999999999977666667779999
Q ss_pred EEEeeC
Q 016368 345 CAVCEN 350 (390)
Q Consensus 345 ~i~g~~ 350 (390)
|+||+.
T Consensus 353 l~IGGE 358 (381)
T COG3055 353 LLIGGE 358 (381)
T ss_pred EEEccc
Confidence 999854
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.44 E-value=1.5e-11 Score=109.47 Aligned_cols=201 Identities=17% Similarity=0.354 Sum_probs=139.8
Q ss_pred CCcEEEeCC--CCceecCCCCC-CCCcceEEEEECCEEEEEeccCCCCC--CCccCeEEEEECCCCccccccEEcccC-C
Q 016368 164 ASPLAFNPQ--SNTWFFGPQLS-IPRRWCAMGSVGGVVYVASGVGAHYR--GDVARSMKKWDLKSDREDWKWEKKAQL-K 237 (390)
Q Consensus 164 ~~~~~~dp~--t~~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~~~--~~~~~~~~~yd~~t~~~~~~W~~~~~~-~ 237 (390)
...+..|.. ...|+++...| .+|.....++++++||||||...... ....+++++|||++++ |+++... |
T Consensus 58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ns----W~kl~t~sP 133 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNS----WHKLDTRSP 133 (381)
T ss_pred ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCCh----hheeccccc
Confidence 456666765 45899999988 57999999999999999999865432 4567899999999999 9998764 3
Q ss_pred CCCccccceEEEEECC-EEEEEcccCCC------------------------------------CceeEEEeCCCCCeEe
Q 016368 238 DGRFSREAVEAVGFKG-NLCMVNLKGNG------------------------------------AKDGAIYNVELDKWKE 280 (390)
Q Consensus 238 ~~~~~r~~~~~~~~~g-~lyv~gg~g~~------------------------------------~~~~~~yd~~~~~W~~ 280 (390)
.... ++.++.+++ ++|++||.... .+.+..||+.+++|+.
T Consensus 134 ~gl~---G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~ 210 (381)
T COG3055 134 TGLV---GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRN 210 (381)
T ss_pred cccc---cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhh
Confidence 3333 577777887 99999976210 1123389999999999
Q ss_pred cCCCCCCCCCCceEEEeeCCeEEEEeCCC--C----cEEEEECC--CCceEEccccccccc------ceeEEE-ECCEEE
Q 016368 281 MPEGMHAGWNGPAASTMNEEELYVVNEGK--G----RLSKYDAD--HDWWDEVIELAELKG------AEKITA-ARGRVC 345 (390)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~g~lyv~gg~~--~----~v~~yd~~--~~~W~~i~~~p~~r~------~~~~~~-~~g~l~ 345 (390)
+...+-.+.++.+.+. -++++.++.|.- + .+.+++.. ..+|..+..+|.+.. ..++.. .++.+.
T Consensus 211 ~G~~pf~~~aGsa~~~-~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~l 289 (381)
T COG3055 211 LGENPFYGNAGSAVVI-KGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVL 289 (381)
T ss_pred cCcCcccCccCcceee-cCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEE
Confidence 9863445566655553 567788888732 1 55566554 457999998886532 122222 366777
Q ss_pred EEeeC------------------------CceEEEEEcCCCCCcceEe--cCCCCeeE
Q 016368 346 AVCEN------------------------GERIMVVDVLASPARAWLV--DPPRGFQV 377 (390)
Q Consensus 346 i~g~~------------------------~~~v~~~d~~~~~~~~W~~--~~p~g~~~ 377 (390)
+.|+. ..+|+++| ++ .|.+ .+|.+++.
T Consensus 290 v~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g---~Wk~~GeLp~~l~Y 342 (381)
T COG3055 290 VAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NG---SWKIVGELPQGLAY 342 (381)
T ss_pred EecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CC---ceeeecccCCCccc
Confidence 77632 12788888 44 7984 36666543
No 29
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.18 E-value=7.5e-09 Score=91.56 Aligned_cols=200 Identities=15% Similarity=0.143 Sum_probs=122.2
Q ss_pred ecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCc---c--eEEEEE----CCEEEEEeccCCCCCCCccCe
Q 016368 145 VRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRR---W--CAMGSV----GGVVYVASGVGAHYRGDVARS 215 (390)
Q Consensus 145 ~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~---~--~~~~~~----~~~lyv~GG~~~~~~~~~~~~ 215 (390)
.+++|+++... ..+.++||.|++|+.+|+.+.++. . .+.+.. .-||..+..... ......
T Consensus 3 sCnGLlc~~~~--------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~---~~~~~~ 71 (230)
T TIGR01640 3 PCDGLICFSYG--------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG---NRNQSE 71 (230)
T ss_pred ccceEEEEecC--------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC---CCCCcc
Confidence 45788876531 579999999999999987654311 1 111111 125555544321 113458
Q ss_pred EEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCC--ceeEEEeCCCCCeEe-cCCCCCCC--CC
Q 016368 216 MKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGA--KDGAIYNVELDKWKE-MPEGMHAG--WN 290 (390)
Q Consensus 216 ~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~--~~~~~yd~~~~~W~~-~~~~~~~~--~~ 290 (390)
+++|+..+++ |+.+...+..... ....+.++|.+|++...+.+. ..+..||+.+++|++ ++.+.... ..
T Consensus 72 ~~Vys~~~~~----Wr~~~~~~~~~~~--~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~ 145 (230)
T TIGR01640 72 HQVYTLGSNS----WRTIECSPPHHPL--KSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVD 145 (230)
T ss_pred EEEEEeCCCC----ccccccCCCCccc--cCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccccccc
Confidence 8999999999 9998854322111 122677999999996332211 257799999999995 55411111 12
Q ss_pred CceEEEeeCCeEEEEeCCC--C--cEEEEE-CCCCceEEcccccc--cc---c--ceeEEEECCEEEEEeeC--CceEEE
Q 016368 291 GPAASTMNEEELYVVNEGK--G--RLSKYD-ADHDWWDEVIELAE--LK---G--AEKITAARGRVCAVCEN--GERIMV 356 (390)
Q Consensus 291 ~~~~~~~~~g~lyv~gg~~--~--~v~~yd-~~~~~W~~i~~~p~--~r---~--~~~~~~~~g~l~i~g~~--~~~v~~ 356 (390)
...++. ++|+|.++.... . +||+.+ .....|++.-.++. .. . ....+..+|+|++.... +.-+..
T Consensus 146 ~~~L~~-~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~ 224 (230)
T TIGR01640 146 YLSLIN-YKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFY 224 (230)
T ss_pred ceEEEE-ECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEE
Confidence 344555 889999987632 2 677775 33557998765542 11 1 12234458888887543 223888
Q ss_pred EEcCCC
Q 016368 357 VDVLAS 362 (390)
Q Consensus 357 ~d~~~~ 362 (390)
||+.++
T Consensus 225 y~~~~~ 230 (230)
T TIGR01640 225 YNVGEN 230 (230)
T ss_pred EeccCC
Confidence 898753
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.13 E-value=1.5e-10 Score=75.85 Aligned_cols=50 Identities=26% Similarity=0.540 Sum_probs=45.3
Q ss_pred CCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368 185 PRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR 240 (390)
Q Consensus 185 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~ 240 (390)
||.+|++++++++|||+||.... ....+++++||++|++ |+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~----W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNT----WEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCc----EEECCCCCCCC
Confidence 68899999999999999999874 5678999999999999 99999999764
No 31
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.96 E-value=1.2e-09 Score=70.59 Aligned_cols=47 Identities=26% Similarity=0.485 Sum_probs=42.6
Q ss_pred CCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC
Q 016368 185 PRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK 237 (390)
Q Consensus 185 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~ 237 (390)
||.+|++++++++||++||.... ....+++++||+++++ |+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~--~~~~~~v~~yd~~~~~----W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN--NQPTNSVEVYDPETNT----WEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST--SSBEEEEEEEETTTTE----EEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeeccc--CceeeeEEEEeCCCCE----EEEcCCCC
Confidence 68999999999999999999873 6788999999999999 99999886
No 32
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.94 E-value=7.7e-10 Score=102.36 Aligned_cols=174 Identities=12% Similarity=0.087 Sum_probs=127.9
Q ss_pred CCCCceecCCCC----------CCCCcceEEEEECC--EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC
Q 016368 171 PQSNTWFFGPQL----------SIPRRWCAMGSVGG--VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD 238 (390)
Q Consensus 171 p~t~~W~~~~~~----------~~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~ 238 (390)
+.+-.|.++++. |..|.+|-++...+ .||+.||.++ ...+.+.|+|+...+. |..+-.-..
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG---~~~l~DFW~Y~v~e~~----W~~iN~~t~ 308 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG---TQDLADFWAYSVKENQ----WTCINRDTE 308 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc---chhHHHHHhhcCCcce----eEEeecCCC
Confidence 456688887653 35689999998865 9999999998 5677899999999999 998765444
Q ss_pred CCccccceEEEEECC--EEEEEccc-C-------CCCceeEEEeCCCCCeEecCCC-----CCCCCCCceEEEeeCCe--
Q 016368 239 GRFSREAVEAVGFKG--NLCMVNLK-G-------NGAKDGAIYNVELDKWKEMPEG-----MHAGWNGPAASTMNEEE-- 301 (390)
Q Consensus 239 ~~~~r~~~~~~~~~g--~lyv~gg~-g-------~~~~~~~~yd~~~~~W~~~~~~-----~~~~~~~~~~~~~~~g~-- 301 (390)
.+..|.+|.+|.... |+|++|-+ + .+..+.++||..++.|..+... -|..-+-|++++ .+.+
T Consensus 309 ~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~V-d~~k~~ 387 (723)
T KOG2437|consen 309 GPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCV-DSEKHM 387 (723)
T ss_pred CCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeE-ecCcce
Confidence 444455788887666 89999754 1 1235678999999999987642 334445678887 6666
Q ss_pred EEEEeCCC--------CcEEEEECCCCceEEccccc----------ccccceeEEEE--CCEEEEEeeCCc
Q 016368 302 LYVVNEGK--------GRLSKYDADHDWWDEVIELA----------ELKGAEKITAA--RGRVCAVCENGE 352 (390)
Q Consensus 302 lyv~gg~~--------~~v~~yd~~~~~W~~i~~~p----------~~r~~~~~~~~--~g~l~i~g~~~~ 352 (390)
|||+||.. +.++.||.....|.....-- ..|.++.|... +.++|++|+.+.
T Consensus 388 iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s 458 (723)
T KOG2437|consen 388 IYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS 458 (723)
T ss_pred EEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence 99999942 27899999999999876322 23556666555 678999986654
No 33
>PF13964 Kelch_6: Kelch motif
Probab=98.84 E-value=7.1e-09 Score=67.87 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=40.5
Q ss_pred eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCC
Q 016368 141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPR 186 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r 186 (390)
+++++++++|++||.... ....+++++||+.|++|+.+++||.||
T Consensus 6 s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred EEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 788889999999998764 378899999999999999999999887
No 34
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.84 E-value=5.3e-06 Score=76.89 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=78.3
Q ss_pred CCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCC----CCCCC--CCceEEE
Q 016368 223 SDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEG----MHAGW--NGPAAST 296 (390)
Q Consensus 223 t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~----~~~~~--~~~~~~~ 296 (390)
.+. |+.+..+.. . ...++.++|++|++. ....+.++|.+-. =+++... +..+. .....+.
T Consensus 189 ~~~----Wt~l~~~~~-~----~~DIi~~kGkfYAvD----~~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVE 254 (373)
T PLN03215 189 GNV----LKALKQMGY-H----FSDIIVHKGQTYALD----SIGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVE 254 (373)
T ss_pred CCe----eeEccCCCc-e----eeEEEEECCEEEEEc----CCCeEEEEecCCc-eeeecceecccccCCcccCceeEEE
Confidence 477 999976433 2 267889999999994 2244556664321 1122210 11111 1233454
Q ss_pred eeCCeEEEEeCCC---------------C----cEEEEECCCCceEEcccccccc------cceeEE------EECCEEE
Q 016368 297 MNEEELYVVNEGK---------------G----RLSKYDADHDWWDEVIELAELK------GAEKIT------AARGRVC 345 (390)
Q Consensus 297 ~~~g~lyv~gg~~---------------~----~v~~yd~~~~~W~~i~~~p~~r------~~~~~~------~~~g~l~ 345 (390)
..|+|+++.... . .+++.|.+..+|.++..+.... ...++. .-++.||
T Consensus 255 -s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIY 333 (373)
T PLN03215 255 -CCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIY 333 (373)
T ss_pred -ECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEE
Confidence 778899987621 1 5677798899999999886431 111111 1257788
Q ss_pred EEeeCCceEEEEEcCCCCCcceEecCCC
Q 016368 346 AVCENGERIMVVDVLASPARAWLVDPPR 373 (390)
Q Consensus 346 i~g~~~~~v~~~d~~~~~~~~W~~~~p~ 373 (390)
+. ++....|||+...+...-.+.+++
T Consensus 334 Ft--dd~~~~v~~~~dg~~~~~~~~~~~ 359 (373)
T PLN03215 334 FT--EDTMPKVFKLDNGNGSSIETTISE 359 (373)
T ss_pred EE--CCCcceEEECCCCCccceEeecCc
Confidence 86 334566888888765445554443
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.83 E-value=3.9e-08 Score=87.21 Aligned_cols=278 Identities=14% Similarity=0.139 Sum_probs=148.9
Q ss_pred CCCCc----HHHHHHHHhcCC---chhhHhhhHhHHHhhcCCCCCC-------------------cccE-EEEeecCCCC
Q 016368 34 LPGLP----NHLADRCLSSLP---PALLFSVCHSWRRLLYSPYFPP-------------------FFSL-YALLFNNNKP 86 (390)
Q Consensus 34 ~~~LP----~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~f~~-------------------~~~l-~~~~~~~~~~ 86 (390)
+..|| +++.+.||+.|- |+.+..|||+|+++++.+.... ..|- |.+....
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r~--- 151 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKNRP--- 151 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccCCC---
Confidence 55689 999999999999 8999999999999999987543 1111 1111111
Q ss_pred CCCCCCcccCCCceeEEE---------EeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecC
Q 016368 87 SHNNNNYYSFNSSMEFFC---------FDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTP 157 (390)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~---------~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~ 157 (390)
+..+..+ ..++. .+...+.|+.-..+-. +.+ -++ -...+..|+..++..++-|
T Consensus 152 -----~~~~~~~-n~f~~~l~pki~~di~~idsNWr~Gr~~~~--rin----c~S--e~skgVYClQYDD~kiVSG---- 213 (499)
T KOG0281|consen 152 -----NDGGFPP-NSFYRLLYPKIIQDIETIESNWRCGRHLLQ--RIN----CRS--ENSKGVYCLQYDDEKIVSG---- 213 (499)
T ss_pred -----CcCCcCC-CcchhhhhHHHHHHHhhhhcchhccceeee--eec----CCc--ccCCceEEEEecchhhhcc----
Confidence 0000000 00100 0122345654322211 000 000 0011224555556555544
Q ss_pred CCCCCCCCcEEEeCCCCceecCCCCCCCCcceE-EEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC
Q 016368 158 HFLPALASPLAFNPQSNTWFFGPQLSIPRRWCA-MGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL 236 (390)
Q Consensus 158 ~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~ 236 (390)
..-+.+-+||..+..-.++- ....+.. +.-++.++.+.|..+. ++-++|.+|+. .+..+
T Consensus 214 ---lrDnTikiWD~n~~~c~~~L---~GHtGSVLCLqyd~rviisGSSDs--------TvrvWDv~tge------~l~tl 273 (499)
T KOG0281|consen 214 ---LRDNTIKIWDKNSLECLKIL---TGHTGSVLCLQYDERVIVSGSSDS--------TVRVWDVNTGE------PLNTL 273 (499)
T ss_pred ---cccCceEEeccccHHHHHhh---hcCCCcEEeeeccceEEEecCCCc--------eEEEEeccCCc------hhhHH
Confidence 22356777777655433221 1122222 2223677666554443 78899988877 12111
Q ss_pred CCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368 237 KDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYD 316 (390)
Q Consensus 237 ~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd 316 (390)
-.-.. .-....+.+|.|..+. -.++..++|...-+=..+-. ...+...+.-++..+++..|-...+..+..|+
T Consensus 274 ihHce--aVLhlrf~ng~mvtcS----kDrsiaVWdm~sps~it~rr-VLvGHrAaVNvVdfd~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 274 IHHCE--AVLHLRFSNGYMVTCS----KDRSIAVWDMASPTDITLRR-VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWS 346 (499)
T ss_pred hhhcc--eeEEEEEeCCEEEEec----CCceeEEEeccCchHHHHHH-HHhhhhhheeeeccccceEEEecCCceEEEEe
Confidence 11000 0122334566666553 34556777776544111111 11222222223347788555555667899999
Q ss_pred CCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCC
Q 016368 317 ADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 317 ~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~ 361 (390)
..|...... +...+.+.+|.-+.|++.|-|+.++.|-+||+..
T Consensus 347 ~st~efvRt--l~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 347 TSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred ccceeeehh--hhcccccceehhccCeEEEecCCCceEEEEeccc
Confidence 888766554 4456667788888999999988888999999766
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.82 E-value=1.2e-08 Score=66.33 Aligned_cols=49 Identities=20% Similarity=0.442 Sum_probs=42.1
Q ss_pred CCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC
Q 016368 185 PRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK 237 (390)
Q Consensus 185 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~ 237 (390)
||..|++++++++|||+||..........+++++||+++++ |+.++.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~----W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQ----WTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCE----EeecCCCC
Confidence 68899999999999999999222236788999999999999 99998875
No 37
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.70 E-value=2.2e-08 Score=65.20 Aligned_cols=47 Identities=19% Similarity=0.430 Sum_probs=31.7
Q ss_pred CCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC
Q 016368 185 PRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK 237 (390)
Q Consensus 185 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~ 237 (390)
||.+|+++.+ +++||++||.... ....+++++||+++++ |++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~--~~~~~d~~~~d~~~~~----W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS--GSPLNDLWIFDIETNT----WTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE---TEE---EEEEETTTTE----EEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCC--CcccCCEEEEECCCCE----EEECCCCC
Confidence 6899999998 5899999999873 4688999999999999 99998876
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.62 E-value=7e-08 Score=62.76 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=41.3
Q ss_pred CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE
Q 016368 147 NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV 194 (390)
Q Consensus 147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~ 194 (390)
+.+|++||.........+++++||+.+++|++++++|.+|..|+++++
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 578888888733347889999999999999999999999999998864
No 39
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.57 E-value=3.7e-08 Score=91.50 Aligned_cols=189 Identities=12% Similarity=0.052 Sum_probs=124.8
Q ss_pred CCCCceeCCCCCCCCCcccccccccccccCCCceEEeecC--eEEEEEeecCCCCCCCCCcEEEeCCCCceecCC---CC
Q 016368 108 ISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRN--NLVLIAATTPHFLPALASPLAFNPQSNTWFFGP---QL 182 (390)
Q Consensus 108 ~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~---~~ 182 (390)
-+..|..++.... +..... ...+++-+.+.|...+ .+|..||.++- ..+.++|.|+...++|..+. ..
T Consensus 237 y~~~W~~i~~~~~--~~~~~~---~~p~~RgGHQMV~~~~~~CiYLYGGWdG~--~~l~DFW~Y~v~e~~W~~iN~~t~~ 309 (723)
T KOG2437|consen 237 YKPRWSQIIPKST--KGDGED---NRPGMRGGHQMVIDVQTECVYLYGGWDGT--QDLADFWAYSVKENQWTCINRDTEG 309 (723)
T ss_pred ccccccccCchhh--cccccc---cCccccCcceEEEeCCCcEEEEecCcccc--hhHHHHHhhcCCcceeEEeecCCCC
Confidence 4566877764331 000000 2233444447766655 79999998765 67899999999999998764 46
Q ss_pred CCCCcceEEEEEC--CEEEEEeccCCCC---CCCccCeEEEEECCCCccccccEEccc------CCCCCccccceEEEEE
Q 016368 183 SIPRRWCAMGSVG--GVVYVASGVGAHY---RGDVARSMKKWDLKSDREDWKWEKKAQ------LKDGRFSREAVEAVGF 251 (390)
Q Consensus 183 ~~~r~~~~~~~~~--~~lyv~GG~~~~~---~~~~~~~~~~yd~~t~~~~~~W~~~~~------~~~~~~~r~~~~~~~~ 251 (390)
|..|..|.++..- .|||+.|-+-+.. ......++|+||..++. |.-+.. -|...+ .|.+++.
T Consensus 310 PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~----W~~ls~dt~~dGGP~~vf---DHqM~Vd 382 (723)
T KOG2437|consen 310 PGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT----WMLLSEDTAADGGPKLVF---DHQMCVD 382 (723)
T ss_pred CcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCce----eEEecccccccCCcceee---cceeeEe
Confidence 7889999888774 4999999874431 12345789999999999 987653 222333 4778888
Q ss_pred CCE--EEEEcccCCC----C-ceeEEEeCCCCCeEecCCCC---------CCCCCCceEEE-eeCCeEEEEeCCCC
Q 016368 252 KGN--LCMVNLKGNG----A-KDGAIYNVELDKWKEMPEGM---------HAGWNGPAAST-MNEEELYVVNEGKG 310 (390)
Q Consensus 252 ~g~--lyv~gg~g~~----~-~~~~~yd~~~~~W~~~~~~~---------~~~~~~~~~~~-~~~g~lyv~gg~~~ 310 (390)
+.+ +||+||.-.. . .....||.....|..+.... ...|.++.+-. .-+..+|++||...
T Consensus 383 ~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s 458 (723)
T KOG2437|consen 383 SEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS 458 (723)
T ss_pred cCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence 777 9999876221 1 22458999999998765311 12222333322 36789999998654
No 40
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.53 E-value=6.2e-08 Score=62.40 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=31.4
Q ss_pred CCCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCC
Q 016368 34 LPGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPY 69 (390)
Q Consensus 34 ~~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~ 69 (390)
|..||+|++.+||++|| +.++.+|||+|+.++.++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~ 39 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNS 39 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChh
Confidence 56899999999999999 8999999999999998874
No 41
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.52 E-value=2.4e-05 Score=69.16 Aligned_cols=203 Identities=13% Similarity=0.130 Sum_probs=112.9
Q ss_pred eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEe-ecC-eEEEEEeecCCCCCCCCCcEEEeCCCCcee
Q 016368 100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLG-VRN-NLVLIAATTPHFLPALASPLAFNPQSNTWF 177 (390)
Q Consensus 100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~ 177 (390)
..+.++||.|++|..+|+++. +..... .. .+++.... .+. +++.+...... .....+.+|+..+++|+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~-~~~~~~----~~---~~~~G~d~~~~~YKVv~~~~~~~~--~~~~~~~Vys~~~~~Wr 83 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKS-RRSNKE----SD---TYFLGYDPIEKQYKVLCFSDRSGN--RNQSEHQVYTLGSNSWR 83 (230)
T ss_pred CcEEEECCCCCCEEecCCCCC-cccccc----cc---eEEEeecccCCcEEEEEEEeecCC--CCCccEEEEEeCCCCcc
Confidence 458999999999999986554 211100 00 00111111 122 45544432211 23457889999999999
Q ss_pred cCCCCCCC-CcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEE-cccCCCCCc-cccceEEEEECCE
Q 016368 178 FGPQLSIP-RRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEK-KAQLKDGRF-SREAVEAVGFKGN 254 (390)
Q Consensus 178 ~~~~~~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~-~~~~~~~~~-~r~~~~~~~~~g~ 254 (390)
.+...+.. ......+.++|.||.+..... ......+..||..+++ |++ ++. |.... .......+.++|+
T Consensus 84 ~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~---~~~~~~IvsFDl~~E~----f~~~i~~-P~~~~~~~~~~~L~~~~G~ 155 (230)
T TIGR01640 84 TIECSPPHHPLKSRGVCINGVLYYLAYTLK---TNPDYFIVSFDVSSER----FKEFIPL-PCGNSDSVDYLSLINYKGK 155 (230)
T ss_pred ccccCCCCccccCCeEEECCEEEEEEEECC---CCCcEEEEEEEcccce----Eeeeeec-CccccccccceEEEEECCE
Confidence 98743321 112236778999999875432 1112379999999999 995 443 32221 1113557778999
Q ss_pred EEEEcccCC-CCceeEEEe-CCCCCeEecCCC-C-CCCCC---CceEEEeeCCeEEEEeCC-CC-cEEEEECCCC
Q 016368 255 LCMVNLKGN-GAKDGAIYN-VELDKWKEMPEG-M-HAGWN---GPAASTMNEEELYVVNEG-KG-RLSKYDADHD 320 (390)
Q Consensus 255 lyv~gg~g~-~~~~~~~yd-~~~~~W~~~~~~-~-~~~~~---~~~~~~~~~g~lyv~gg~-~~-~v~~yd~~~~ 320 (390)
+.++..... ..-++++.+ -..+.|++.-.. + +.... .....+..+|+|++.... .+ .+..||++++
T Consensus 156 L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 156 LAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 998853211 112344443 335579874321 0 11111 112222378898887763 13 3899998864
No 42
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.49 E-value=1.7e-07 Score=60.33 Aligned_cols=41 Identities=24% Similarity=0.507 Sum_probs=35.2
Q ss_pred CCCCceEEEeeCCeEEEEeCCCC------cEEEEECCCCceEEccccc
Q 016368 288 GWNGPAASTMNEEELYVVNEGKG------RLSKYDADHDWWDEVIELA 329 (390)
Q Consensus 288 ~~~~~~~~~~~~g~lyv~gg~~~------~v~~yd~~~~~W~~i~~~p 329 (390)
+|..+++++ ++++||++||..+ .+++||+.+++|+++++||
T Consensus 1 pR~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVV-VGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEE-ETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEE-ECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 356677887 9999999999654 8999999999999999876
No 43
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.48 E-value=4e-07 Score=59.15 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=40.4
Q ss_pred CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE
Q 016368 195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG 250 (390)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~ 250 (390)
+++|||+||... ......+++++||+.+++ |++++++|.+|. .|++++
T Consensus 1 g~~~~vfGG~~~-~~~~~~nd~~~~~~~~~~----W~~~~~~P~~R~---~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDD-DGGTRLNDVWVFDLDTNT----WTRIGDLPPPRS---GHTATV 48 (49)
T ss_pred CCEEEEECCcCC-CCCCEecCEEEEECCCCE----EEECCCCCCCcc---ceEEEE
Confidence 578999999983 126788999999999999 999998888776 687775
No 44
>smart00612 Kelch Kelch domain.
Probab=98.45 E-value=3.3e-07 Score=58.89 Aligned_cols=47 Identities=19% Similarity=0.442 Sum_probs=39.4
Q ss_pred EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECC
Q 016368 197 VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKG 253 (390)
Q Consensus 197 ~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g 253 (390)
+||++||... ....+++++||+.+++ |+.+++|+.++. .++++.++|
T Consensus 1 ~iyv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~~~~~r~---~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG---GQRLKSVEVYDPETNK----WTPLPSMPTPRS---GHGVAVING 47 (47)
T ss_pred CEEEEeCCCC---CceeeeEEEECCCCCe----EccCCCCCCccc---cceEEEeCC
Confidence 4899999865 4567899999999999 999999998876 577777664
No 45
>smart00612 Kelch Kelch domain.
Probab=98.44 E-value=3.8e-07 Score=58.58 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=39.9
Q ss_pred eEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECC
Q 016368 148 NLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGG 196 (390)
Q Consensus 148 ~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~ 196 (390)
.+|++||.... ...+++++|||.+++|+.+++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG--QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC--ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 37888887542 567899999999999999999999999999888764
No 46
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=98.30 E-value=0.0013 Score=61.46 Aligned_cols=141 Identities=15% Similarity=0.234 Sum_probs=89.4
Q ss_pred eEEee-cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCC----ccCe
Q 016368 141 QSLGV-RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGD----VARS 215 (390)
Q Consensus 141 ~~~~~-~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~----~~~~ 215 (390)
.++++ +.+++.+... ..+.+||..|..-...|.+..+.....++.++++||++.......... ..-.
T Consensus 70 ~F~al~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE 141 (342)
T PF07893_consen 70 DFFALHGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFE 141 (342)
T ss_pred EEEEecCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEE
Confidence 55565 5566665321 468999999999999999888877778888899999998775421110 0223
Q ss_pred EEEEECC----CCccccccEEcccCCCCCcccc----ceEEEEE-CCEEEEEcccCCCCc--eeEEEeCCCCCeEecCCC
Q 016368 216 MKKWDLK----SDREDWKWEKKAQLKDGRFSRE----AVEAVGF-KGNLCMVNLKGNGAK--DGAIYNVELDKWKEMPEG 284 (390)
Q Consensus 216 ~~~yd~~----t~~~~~~W~~~~~~~~~~~~r~----~~~~~~~-~g~lyv~gg~g~~~~--~~~~yd~~~~~W~~~~~~ 284 (390)
+.+|++. .....|.|+.+++.|.....+. -.+-+++ +..|+|-- .+. .+..||+++.+|+....
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~----~~~~~GTysfDt~~~~W~~~Gd- 216 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSV----NGRRWGTYSFDTESHEWRKHGD- 216 (342)
T ss_pred EeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEe----cCCceEEEEEEcCCcceeeccc-
Confidence 4444521 2334577999988664433211 2334445 55677731 222 58899999999999987
Q ss_pred CCCCCCCceE
Q 016368 285 MHAGWNGPAA 294 (390)
Q Consensus 285 ~~~~~~~~~~ 294 (390)
+..+-.+.+.
T Consensus 217 W~LPF~G~a~ 226 (342)
T PF07893_consen 217 WMLPFHGQAE 226 (342)
T ss_pred eecCcCCccE
Confidence 5444443333
No 47
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.28 E-value=7.2e-07 Score=55.48 Aligned_cols=35 Identities=37% Similarity=0.551 Sum_probs=32.4
Q ss_pred CcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCCCC
Q 016368 37 LPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPYFP 71 (390)
Q Consensus 37 LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~f~ 71 (390)
||+|++.+||.+|+ +.++++|||+|+.++.++.|.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence 79999999999999 889999999999999988754
No 48
>PF13854 Kelch_5: Kelch motif
Probab=98.26 E-value=3e-06 Score=52.89 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=35.9
Q ss_pred CCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCC
Q 016368 182 LSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSD 224 (390)
Q Consensus 182 ~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 224 (390)
+|.+|..|++++++++||++||... ......+++++||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCCC
Confidence 4788999999999999999999984 23678899999998763
No 49
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.23 E-value=2.8e-06 Score=55.15 Aligned_cols=43 Identities=9% Similarity=0.158 Sum_probs=36.4
Q ss_pred eEEeecCeEEEEEee-cCCCCCCCCCcEEEeCCCCceecCCCCC
Q 016368 141 QSLGVRNNLVLIAAT-TPHFLPALASPLAFNPQSNTWFFGPQLS 183 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~-~~~~~~~~~~~~~~dp~t~~W~~~~~~~ 183 (390)
++++.++++|++||. ........+++++||+.+++|+.+++++
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 788889999999998 3333378899999999999999998874
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.21 E-value=2.5e-05 Score=68.53 Aligned_cols=139 Identities=14% Similarity=0.142 Sum_probs=96.1
Q ss_pred eEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCC----CCeEecCCCCCCCCC
Q 016368 215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVEL----DKWKEMPEGMHAGWN 290 (390)
Q Consensus 215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~----~~W~~~~~~~~~~~~ 290 (390)
-...||+.|++ ++.+.......+ +..+..-||++.+.||...|.+.+-.|++.+ ..|.+.+..|..+|-
T Consensus 47 ~s~~yD~~tn~----~rpl~v~td~FC---Sgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW 119 (243)
T PF07250_consen 47 HSVEYDPNTNT----FRPLTVQTDTFC---SGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW 119 (243)
T ss_pred EEEEEecCCCc----EEeccCCCCCcc---cCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc
Confidence 35679999999 998876544444 2334456999999998866777778898865 589998765888888
Q ss_pred CceEEEeeCCeEEEEeCCCCcEEEEECCCC---c---eEEccc----ccccccceeEEEECCEEEEEeeCCceEEEEEcC
Q 016368 291 GPAASTMNEEELYVVNEGKGRLSKYDADHD---W---WDEVIE----LAELKGAEKITAARGRVCAVCENGERIMVVDVL 360 (390)
Q Consensus 291 ~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~---~---W~~i~~----~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~ 360 (390)
.+++..+-||+++|+||.....+.|-+... . |..+.. .+.....+....-+|+||+++. ..-+++|..
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an--~~s~i~d~~ 197 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN--RGSIIYDYK 197 (243)
T ss_pred cccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc--CCcEEEeCC
Confidence 787777679999999998775555555421 1 221221 1222334555555999999954 356677888
Q ss_pred CC
Q 016368 361 AS 362 (390)
Q Consensus 361 ~~ 362 (390)
++
T Consensus 198 ~n 199 (243)
T PF07250_consen 198 TN 199 (243)
T ss_pred CC
Confidence 77
No 51
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.19 E-value=1.7e-06 Score=56.15 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=27.2
Q ss_pred CCCCceEEEee-CCeEEEEeCCCC------cEEEEECCCCceEEccccc
Q 016368 288 GWNGPAASTMN-EEELYVVNEGKG------RLSKYDADHDWWDEVIELA 329 (390)
Q Consensus 288 ~~~~~~~~~~~-~g~lyv~gg~~~------~v~~yd~~~~~W~~i~~~p 329 (390)
+|.+++++. + +++||++||.+. ++++||+++++|++++++|
T Consensus 1 pR~~h~~~~-~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVS-IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEE-E-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEE-EeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 466778887 6 699999999532 8999999999999998776
No 52
>PLN02772 guanylate kinase
Probab=98.15 E-value=1.9e-05 Score=73.63 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=64.6
Q ss_pred CCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccC
Q 016368 184 IPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKG 262 (390)
Q Consensus 184 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g 262 (390)
.++..++++.+++++||+||.++. ....+.+++||..|++ |....-....+.+|.+|+++++ +++|+|+++.+
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~--~~~~~~v~i~D~~t~~----W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEG--NTLSIGVQILDKITNN----WVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCC--ccccceEEEEECCCCc----EecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 378889999999999999998762 3367899999999999 9987766655566668999987 68999996443
Q ss_pred CCCceeEEEeCCC
Q 016368 263 NGAKDGAIYNVEL 275 (390)
Q Consensus 263 ~~~~~~~~yd~~~ 275 (390)
.-..+.+.+...|
T Consensus 97 ~~~~~~w~l~~~t 109 (398)
T PLN02772 97 APDDSIWFLEVDT 109 (398)
T ss_pred CCccceEEEEcCC
Confidence 2234455444443
No 53
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.14 E-value=6e-07 Score=58.07 Aligned_cols=36 Identities=36% Similarity=0.511 Sum_probs=30.0
Q ss_pred CCCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCC
Q 016368 34 LPGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPY 69 (390)
Q Consensus 34 ~~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~ 69 (390)
+..||+|++.+||.+|+ +.+++.|||+|++++.++.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~ 41 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPR 41 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCC
Confidence 45799999999999999 9999999999999998754
No 54
>PLN02772 guanylate kinase
Probab=98.12 E-value=1.6e-05 Score=74.18 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=61.8
Q ss_pred CCCCCceEEEeeCCeEEEEeCCCC------cEEEEECCCCceEEc---ccccccccceeEEEE-CCEEEEEeeC---Cce
Q 016368 287 AGWNGPAASTMNEEELYVVNEGKG------RLSKYDADHDWWDEV---IELAELKGAEKITAA-RGRVCAVCEN---GER 353 (390)
Q Consensus 287 ~~~~~~~~~~~~~g~lyv~gg~~~------~v~~yd~~~~~W~~i---~~~p~~r~~~~~~~~-~g~l~i~g~~---~~~ 353 (390)
.++..+++++ +++++||+||.+. .++.||..+..|..- ++.|.+|.+|+++++ +++|+|++++ +++
T Consensus 23 ~~~~~~tav~-igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~ 101 (398)
T PLN02772 23 KPKNRETSVT-IGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDS 101 (398)
T ss_pred CCCCcceeEE-ECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccc
Confidence 3555677777 9999999998432 799999999999875 477888999998888 7999999844 569
Q ss_pred EEEEEcCCC
Q 016368 354 IMVVDVLAS 362 (390)
Q Consensus 354 v~~~d~~~~ 362 (390)
+|++++.++
T Consensus 102 ~w~l~~~t~ 110 (398)
T PLN02772 102 IWFLEVDTP 110 (398)
T ss_pred eEEEEcCCH
Confidence 999999874
No 55
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.11 E-value=5.2e-05 Score=66.51 Aligned_cols=154 Identities=16% Similarity=0.281 Sum_probs=98.5
Q ss_pred ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCC----C
Q 016368 99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQS----N 174 (390)
Q Consensus 99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t----~ 174 (390)
...-..||+.+++++.+..... .||- . ++...+|.++..||...+ ...+..|+|.+ .
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td------~FCS------g---g~~L~dG~ll~tGG~~~G----~~~ir~~~p~~~~~~~ 105 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTD------TFCS------G---GAFLPDGRLLQTGGDNDG----NKAIRIFTPCTSDGTC 105 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCC------Cccc------C---cCCCCCCCEEEeCCCCcc----ccceEEEecCCCCCCC
Confidence 3346789999999998864322 2221 0 333346677777776432 35677788875 6
Q ss_pred ceecCC-CCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCc-cccccEEccc----CCCCCccccceE
Q 016368 175 TWFFGP-QLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDR-EDWKWEKKAQ----LKDGRFSREAVE 247 (390)
Q Consensus 175 ~W~~~~-~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~-~~~~W~~~~~----~~~~~~~r~~~~ 247 (390)
.|.+.+ .|..+|-+.+...+ +|+++|+||.... ..|.+...... ..+.|..+.. .+...+ .+.
T Consensus 106 ~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~-------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlY---P~~ 175 (243)
T PF07250_consen 106 DWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNP-------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLY---PFV 175 (243)
T ss_pred CceECcccccCCCccccceECCCCCEEEEeCcCCC-------cccccCCccCCCCceeeecchhhhccCccccC---ceE
Confidence 898876 58899999988887 7999999998741 33444432211 0111333322 222333 255
Q ss_pred EEEECCEEEEEcccCCCCceeEEEeCCCCCe-EecCCCCCC
Q 016368 248 AVGFKGNLCMVNLKGNGAKDGAIYNVELDKW-KEMPEGMHA 287 (390)
Q Consensus 248 ~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W-~~~~~~~~~ 287 (390)
.+.-+|+|+++ ......+||..++++ +.++. +|.
T Consensus 176 ~llPdG~lFi~-----an~~s~i~d~~~n~v~~~lP~-lPg 210 (243)
T PF07250_consen 176 HLLPDGNLFIF-----ANRGSIIYDYKTNTVVRTLPD-LPG 210 (243)
T ss_pred EEcCCCCEEEE-----EcCCcEEEeCCCCeEEeeCCC-CCC
Confidence 55679999999 456788999999987 67777 544
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.87 E-value=0.015 Score=55.86 Aligned_cols=181 Identities=12% Similarity=0.111 Sum_probs=106.5
Q ss_pred CCcEEEeCCCCc--eecCCCCCC--CCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC
Q 016368 164 ASPLAFNPQSNT--WFFGPQLSI--PRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG 239 (390)
Q Consensus 164 ~~~~~~dp~t~~--W~~~~~~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~ 239 (390)
..++.+|+.+++ |+.-...+. .+...+-++.++.+|+..+. ..+..+|+++++. .|+.-...+..
T Consensus 170 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~---------g~v~a~d~~~G~~--~W~~~~~~~~~ 238 (394)
T PRK11138 170 GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN---------GRVSAVLMEQGQL--IWQQRISQPTG 238 (394)
T ss_pred CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC---------CEEEEEEccCChh--hheeccccCCC
Confidence 468999998884 766432221 12223344557777764322 2577888888763 38743221110
Q ss_pred -----CccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcE
Q 016368 240 -----RFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRL 312 (390)
Q Consensus 240 -----~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v 312 (390)
+......+.++.++.+|+.+ ......++|..++ .|+..-. .. ...++ .++.||+.. .++.+
T Consensus 239 ~~~~~~~~~~~~sP~v~~~~vy~~~----~~g~l~ald~~tG~~~W~~~~~---~~---~~~~~-~~~~vy~~~-~~g~l 306 (394)
T PRK11138 239 ATEIDRLVDVDTTPVVVGGVVYALA----YNGNLVALDLRSGQIVWKREYG---SV---NDFAV-DGGRIYLVD-QNDRV 306 (394)
T ss_pred ccchhcccccCCCcEEECCEEEEEE----cCCeEEEEECCCCCEEEeecCC---Cc---cCcEE-ECCEEEEEc-CCCeE
Confidence 00000133456799999885 2345778999876 5876322 11 12344 788999876 46789
Q ss_pred EEEECCCCc--eEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCCCCcceEecC
Q 016368 313 SKYDADHDW--WDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDP 371 (390)
Q Consensus 313 ~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~~~ 371 (390)
+.+|.++.+ |+.-. + ..+...+.++.+|+||+. ..+..++++|..+.. ..|+...
T Consensus 307 ~ald~~tG~~~W~~~~-~-~~~~~~sp~v~~g~l~v~-~~~G~l~~ld~~tG~-~~~~~~~ 363 (394)
T PRK11138 307 YALDTRGGVELWSQSD-L-LHRLLTAPVLYNGYLVVG-DSEGYLHWINREDGR-FVAQQKV 363 (394)
T ss_pred EEEECCCCcEEEcccc-c-CCCcccCCEEECCEEEEE-eCCCEEEEEECCCCC-EEEEEEc
Confidence 999998754 76422 1 112223455678999886 455588899987753 3577544
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.85 E-value=0.011 Score=56.71 Aligned_cols=165 Identities=13% Similarity=0.087 Sum_probs=97.2
Q ss_pred CCcEEEeCCCC--ceecCCCCCCC--------CcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEc
Q 016368 164 ASPLAFNPQSN--TWFFGPQLSIP--------RRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKK 233 (390)
Q Consensus 164 ~~~~~~dp~t~--~W~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~ 233 (390)
..++.+|+.++ .|+.--..+.. ....+-++.++.||+.+. + ..+.++|+.+++. .|+.-
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~--------g~l~ald~~tG~~--~W~~~ 283 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-N--------GNLVALDLRSGQI--VWKRE 283 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-C--------CeEEEEECCCCCE--EEeec
Confidence 35777888876 47542111110 112334556889998652 1 2688999988763 38753
Q ss_pred ccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCc
Q 016368 234 AQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGR 311 (390)
Q Consensus 234 ~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~ 311 (390)
. .. ....+..++++|+.. ......++|.+++ .|+.-.. ..+...+.++ .+|.||+.. .++.
T Consensus 284 ~--~~------~~~~~~~~~~vy~~~----~~g~l~ald~~tG~~~W~~~~~---~~~~~~sp~v-~~g~l~v~~-~~G~ 346 (394)
T PRK11138 284 Y--GS------VNDFAVDGGRIYLVD----QNDRVYALDTRGGVELWSQSDL---LHRLLTAPVL-YNGYLVVGD-SEGY 346 (394)
T ss_pred C--CC------ccCcEEECCEEEEEc----CCCeEEEEECCCCcEEEccccc---CCCcccCCEE-ECCEEEEEe-CCCE
Confidence 1 11 123456799999985 3345778898876 4865322 1122233344 788888654 5778
Q ss_pred EEEEECCCCc--eEEcccccccccceeEEEECCEEEEEeeCCceEEEEEc
Q 016368 312 LSKYDADHDW--WDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDV 359 (390)
Q Consensus 312 v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~ 359 (390)
++.+|..+.+ |+. .+.......+.++.+++|||. ..+..++.++.
T Consensus 347 l~~ld~~tG~~~~~~--~~~~~~~~s~P~~~~~~l~v~-t~~G~l~~~~~ 393 (394)
T PRK11138 347 LHWINREDGRFVAQQ--KVDSSGFLSEPVVADDKLLIQ-ARDGTVYAITR 393 (394)
T ss_pred EEEEECCCCCEEEEE--EcCCCcceeCCEEECCEEEEE-eCCceEEEEeC
Confidence 9999998765 543 111122233456678999987 44557776653
No 58
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.84 E-value=0.017 Score=50.84 Aligned_cols=190 Identities=16% Similarity=0.232 Sum_probs=110.8
Q ss_pred eecCeEEEEEeecCCCCCCCCCcEEEeCCCCc--eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEEC
Q 016368 144 GVRNNLVLIAATTPHFLPALASPLAFNPQSNT--WFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDL 221 (390)
Q Consensus 144 ~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~ 221 (390)
...++.++++. ....++.+|+.+++ |+.-. +.+ ........++.||+.... ..+..+|.
T Consensus 33 ~~~~~~v~~~~-------~~~~l~~~d~~tG~~~W~~~~--~~~-~~~~~~~~~~~v~v~~~~---------~~l~~~d~ 93 (238)
T PF13360_consen 33 VPDGGRVYVAS-------GDGNLYALDAKTGKVLWRFDL--PGP-ISGAPVVDGGRVYVGTSD---------GSLYALDA 93 (238)
T ss_dssp EEETTEEEEEE-------TTSEEEEEETTTSEEEEEEEC--SSC-GGSGEEEETTEEEEEETT---------SEEEEEET
T ss_pred EEeCCEEEEEc-------CCCEEEEEECCCCCEEEEeec--ccc-ccceeeecccccccccce---------eeeEeccc
Confidence 33555555552 23689999998884 65433 111 111247778999887621 27899998
Q ss_pred CCCccccccE-EcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCCCC-------
Q 016368 222 KSDREDWKWE-KKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGWNG------- 291 (390)
Q Consensus 222 ~t~~~~~~W~-~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~------- 291 (390)
.++.. .|+ .....+.... ......+..++.+|+.. ......++|++++ .|+.... .+.....
T Consensus 94 ~tG~~--~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~ 165 (238)
T PF13360_consen 94 KTGKV--LWSIYLTSSPPAGV-RSSSSPAVDGDRLYVGT----SSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDI 165 (238)
T ss_dssp TTSCE--EEEEEE-SSCTCST-B--SEEEEETTEEEEEE----TCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTE
T ss_pred CCcce--eeeecccccccccc-ccccCceEecCEEEEEe----ccCcEEEEecCCCcEEEEeecC-CCCCCcceeeeccc
Confidence 88763 488 3433222211 11234444577888774 3566789998877 5776443 3221111
Q ss_pred ceEEEeeCCeEEEEeCCCCcEEEEECCCCc--eEEccccccccccee-EEEECCEEEEEeeCCceEEEEEcCCCCCcceE
Q 016368 292 PAASTMNEEELYVVNEGKGRLSKYDADHDW--WDEVIELAELKGAEK-ITAARGRVCAVCENGERIMVVDVLASPARAWL 368 (390)
Q Consensus 292 ~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~-~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~ 368 (390)
.+..+..++.+|+..+ ++.+..+|.++.+ |+.. +.. ... ....++.||+.. ....++.+|+.+... .|+
T Consensus 166 ~~~~~~~~~~v~~~~~-~g~~~~~d~~tg~~~w~~~--~~~---~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~-~W~ 237 (238)
T PF13360_consen 166 NGSPVISDGRVYVSSG-DGRVVAVDLATGEKLWSKP--ISG---IYSLPSVDGGTLYVTS-SDGRLYALDLKTGKV-VWQ 237 (238)
T ss_dssp EEEEECCTTEEEEECC-TSSEEEEETTTTEEEEEEC--SS----ECECEECCCTEEEEEE-TTTEEEEEETTTTEE-EEE
T ss_pred ccceEEECCEEEEEcC-CCeEEEEECCCCCEEEEec--CCC---ccCCceeeCCEEEEEe-CCCEEEEEECCCCCE-EeE
Confidence 1222224677777665 4446667999987 7433 111 223 555688888875 678999999998732 464
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.66 E-value=0.031 Score=53.24 Aligned_cols=163 Identities=15% Similarity=0.059 Sum_probs=92.7
Q ss_pred CCcEEEeCCCC--ceecCCCCCCC-----C---cceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEc
Q 016368 164 ASPLAFNPQSN--TWFFGPQLSIP-----R---RWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKK 233 (390)
Q Consensus 164 ~~~~~~dp~t~--~W~~~~~~~~~-----r---~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~ 233 (390)
..+..+|+.++ .|+.--..+.. + ......+.++.||+.+.. ..+.+||+++++. .|+.-
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~---------g~l~a~d~~tG~~--~W~~~ 268 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ---------GRVAALDLRSGRV--LWKRD 268 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC---------CEEEEEECCCCcE--EEeec
Confidence 46888898876 47542111111 1 122334557888885421 2688999988763 37653
Q ss_pred ccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCc
Q 016368 234 AQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGR 311 (390)
Q Consensus 234 ~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~ 311 (390)
. .. ..+.+..++++|+.. ......++|..++ .|+.... .. ....+.+. .++.||+. ..++.
T Consensus 269 ~--~~------~~~p~~~~~~vyv~~----~~G~l~~~d~~tG~~~W~~~~~--~~-~~~ssp~i-~g~~l~~~-~~~G~ 331 (377)
T TIGR03300 269 A--SS------YQGPAVDDNRLYVTD----ADGVVVALDRRSGSELWKNDEL--KY-RQLTAPAV-VGGYLVVG-DFEGY 331 (377)
T ss_pred c--CC------ccCceEeCCEEEEEC----CCCeEEEEECCCCcEEEccccc--cC-CccccCEE-ECCEEEEE-eCCCE
Confidence 1 11 133446789999884 3345778898766 5875322 11 12223333 57777764 46778
Q ss_pred EEEEECCCCc--eEEcccccccccceeEEEECCEEEEEeeCCceEEEE
Q 016368 312 LSKYDADHDW--WDEVIELAELKGAEKITAARGRVCAVCENGERIMVV 357 (390)
Q Consensus 312 v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~ 357 (390)
++.+|..+.+ |+.- ++......+.+..+++||+.+ .+..++.+
T Consensus 332 l~~~d~~tG~~~~~~~--~~~~~~~~sp~~~~~~l~v~~-~dG~l~~~ 376 (377)
T TIGR03300 332 LHWLSREDGSFVARLK--TDGSGIASPPVVVGDGLLVQT-RDGDLYAF 376 (377)
T ss_pred EEEEECCCCCEEEEEE--cCCCccccCCEEECCEEEEEe-CCceEEEe
Confidence 9999987654 4221 112123345677788988874 44455543
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.64 E-value=0.011 Score=58.49 Aligned_cols=288 Identities=15% Similarity=0.102 Sum_probs=140.3
Q ss_pred ccCCCCCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCCCCCcccEEEEeecCCCCCCCCCCcccCCC---ce--e
Q 016368 30 ILLLLPGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNS---SM--E 101 (390)
Q Consensus 30 ~~~~~~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~--~ 101 (390)
....+..||.|+...||..|+ +..+++||+.|+.++.+................ +..... ...... .. .
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~ks 180 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLP--PKCEKG-LPLKSGFKGRPWKS 180 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCC--cccCcc-cccccccccchhhh
Confidence 345577899999999999999 999999999999999987644300000000000 000000 000000 00 0
Q ss_pred EE-EEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCC
Q 016368 102 FF-CFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGP 180 (390)
Q Consensus 102 ~~-~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~ 180 (390)
++ ......+.|............ +... ..+.+....++.++.+ .....+.+||..+..--..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~q~~~~~~~~~-------s~~~tl~~~~~~~~~~i~~~ 244 (537)
T KOG0274|consen 181 FYRRRFRLSKNWRKLFRRGYKVLL-GTDD--------HVVLCLQLHDGFFKSG-------SDDSTLHLWDLNNGYLILTR 244 (537)
T ss_pred hhhhhhhccccccccccccceeec-ccCc--------chhhhheeecCeEEec-------CCCceeEEeecccceEEEee
Confidence 00 011122344443322210000 0000 0001222223333332 12233456777666444332
Q ss_pred CCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEc
Q 016368 181 QLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVN 259 (390)
Q Consensus 181 ~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~g 259 (390)
.....-.-.++... ++.+++.|-.+. ++.++|..++. -..+-.... ....+......+.++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~--------t~rvWd~~sg~----C~~~l~gh~------stv~~~~~~~~~~~s 306 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDK--------TERVWDCSTGE----CTHSLQGHT------SSVRCLTIDPFLLVS 306 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCC--------cEEeEecCCCc----EEEEecCCC------ceEEEEEccCceEee
Confidence 11111111222222 355555554443 67788877776 443322111 122223344444444
Q ss_pred ccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEE
Q 016368 260 LKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITA 339 (390)
Q Consensus 260 g~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~ 339 (390)
|.....+.++|.++..--.+-. +...+..++.+++.+.|.|..++.|-+||+.+.+... .+..+........
T Consensus 307 --gs~D~tVkVW~v~n~~~l~l~~----~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~--sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 307 --GSRDNTVKVWDVTNGACLNLLR----GHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLK--SLSGHTGRVYSLI 378 (537)
T ss_pred --ccCCceEEEEeccCcceEEEec----cccccEEEEEecCCEEEEEecCceEEEEEhhhceeee--eecCCcceEEEEE
Confidence 2234556788888655433322 1233333434788999999999999999999654433 3333322333335
Q ss_pred ECC-EEEEEeeCCceEEEEEcCCC
Q 016368 340 ARG-RVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 340 ~~g-~l~i~g~~~~~v~~~d~~~~ 362 (390)
+++ ..++-|+-+..|.+||+.+.
T Consensus 379 ~~~~~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 379 VDSENRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred ecCcceEEeeeeccceEeecCCch
Confidence 566 55555555677888888776
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.62 E-value=0.018 Score=50.70 Aligned_cols=179 Identities=19% Similarity=0.272 Sum_probs=102.5
Q ss_pred CcEEEeCCCC--ceecCCCCCCCCcceE--EEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368 165 SPLAFNPQSN--TWFFGPQLSIPRRWCA--MGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR 240 (390)
Q Consensus 165 ~~~~~dp~t~--~W~~~~~~~~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~ 240 (390)
.+..+|+.++ .|+.- +........ .+..++.+|+..+ ...+.++|..+++. .|+.-.+-+.
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~---------~~~l~~~d~~tG~~--~W~~~~~~~~-- 68 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG---------DGNLYALDAKTGKV--LWRFDLPGPI-- 68 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET---------TSEEEEEETTTSEE--EEEEECSSCG--
T ss_pred EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC---------CCEEEEEECCCCCE--EEEeeccccc--
Confidence 4667787766 46551 111122222 3346889998742 24789999988762 3776542221
Q ss_pred ccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeE-ecCCCCCCC-CCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368 241 FSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWK-EMPEGMHAG-WNGPAASTMNEEELYVVNEGKGRLSKYD 316 (390)
Q Consensus 241 ~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~-~~~~~~~~~-~~~~~~~~~~~g~lyv~gg~~~~v~~yd 316 (390)
. ...+..++.+|+.. .......+|.+++ .|+ ......... .......+ .++.+|+ +..++.+..+|
T Consensus 69 ~----~~~~~~~~~v~v~~----~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~g~l~~~d 138 (238)
T PF13360_consen 69 S----GAPVVDGGRVYVGT----SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYV-GTSSGKLVALD 138 (238)
T ss_dssp G----SGEEEETTEEEEEE----TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEE-EETCSEEEEEE
T ss_pred c----ceeeeccccccccc----ceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEE-EeccCcEEEEe
Confidence 1 22467899999884 2336789997766 698 343311122 22333443 4555554 44477999999
Q ss_pred CCCCc--eEEcccccccc--------cceeEEEECCEEEEEeeCCceEEEEEcCCCCCcceEec
Q 016368 317 ADHDW--WDEVIELAELK--------GAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVD 370 (390)
Q Consensus 317 ~~~~~--W~~i~~~p~~r--------~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~~ 370 (390)
+++.+ |+.-...+... ....++..+|.||+....+. ++.+|..+... .|+..
T Consensus 139 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg~~-~w~~~ 200 (238)
T PF13360_consen 139 PKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-VVAVDLATGEK-LWSKP 200 (238)
T ss_dssp TTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-EEEEETTTTEE-EEEEC
T ss_pred cCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-EEEEECCCCCE-EEEec
Confidence 98764 77644443211 12334445788888854443 55558887742 38644
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.43 E-value=0.046 Score=52.01 Aligned_cols=189 Identities=15% Similarity=0.229 Sum_probs=104.3
Q ss_pred ecCeEEEEEeecCCCCCCCCCcEEEeCCCC--ceec-CCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEEC
Q 016368 145 VRNNLVLIAATTPHFLPALASPLAFNPQSN--TWFF-GPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDL 221 (390)
Q Consensus 145 ~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~--~W~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~ 221 (390)
+.++.+++++. ...++.+|+.++ .|+. ++.. ...+.++.++.+|+.+ .+ ..+..+|.
T Consensus 63 v~~~~v~v~~~-------~g~v~a~d~~tG~~~W~~~~~~~----~~~~p~v~~~~v~v~~-~~--------g~l~ald~ 122 (377)
T TIGR03300 63 VAGGKVYAADA-------DGTVVALDAETGKRLWRVDLDER----LSGGVGADGGLVFVGT-EK--------GEVIALDA 122 (377)
T ss_pred EECCEEEEECC-------CCeEEEEEccCCcEeeeecCCCC----cccceEEcCCEEEEEc-CC--------CEEEEEEC
Confidence 33555555532 246899998877 4764 2221 1123344577788643 22 37899999
Q ss_pred CCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCC-CCCceEEEee
Q 016368 222 KSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAG-WNGPAASTMN 298 (390)
Q Consensus 222 ~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~-~~~~~~~~~~ 298 (390)
.+++. .|+.-.. ... ..+.+..++++|+.. ......++|.+++ .|+......... ....+.++ .
T Consensus 123 ~tG~~--~W~~~~~--~~~----~~~p~v~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~ 189 (377)
T TIGR03300 123 EDGKE--LWRAKLS--SEV----LSPPLVANGLVVVRT----NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-A 189 (377)
T ss_pred CCCcE--eeeeccC--cee----ecCCEEECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-E
Confidence 87763 3874322 111 123344688888864 2344778998765 587643311111 11223333 5
Q ss_pred CCeEEEEeCCCCcEEEEECCCC--ceEEccccccc-----c---cceeEEEECCEEEEEeeCCceEEEEEcCCCCCcceE
Q 016368 299 EEELYVVNEGKGRLSKYDADHD--WWDEVIELAEL-----K---GAEKITAARGRVCAVCENGERIMVVDVLASPARAWL 368 (390)
Q Consensus 299 ~g~lyv~gg~~~~v~~yd~~~~--~W~~i~~~p~~-----r---~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~ 368 (390)
++.+ +++..++.+..+|+++. .|+.-...+.. + ........++.||+. ..+..++.+|+.+.. ..|.
T Consensus 190 ~~~v-~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~-~~~g~l~a~d~~tG~-~~W~ 266 (377)
T TIGR03300 190 DGGV-LVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAV-SYQGRVAALDLRSGR-VLWK 266 (377)
T ss_pred CCEE-EEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEE-EcCCEEEEEECCCCc-EEEe
Confidence 6654 45656678999998765 47643211111 0 112234457788876 444578888886542 3576
Q ss_pred e
Q 016368 369 V 369 (390)
Q Consensus 369 ~ 369 (390)
.
T Consensus 267 ~ 267 (377)
T TIGR03300 267 R 267 (377)
T ss_pred e
Confidence 4
No 63
>PF13854 Kelch_5: Kelch motif
Probab=97.36 E-value=0.00053 Score=42.63 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=29.0
Q ss_pred CCCCCCCceEEEeeCCeEEEEeCCCC-------cEEEEECCC
Q 016368 285 MHAGWNGPAASTMNEEELYVVNEGKG-------RLSKYDADH 319 (390)
Q Consensus 285 ~~~~~~~~~~~~~~~g~lyv~gg~~~-------~v~~yd~~~ 319 (390)
+|.+|.++++++ .+++||++||..+ ++|+||..+
T Consensus 1 ~P~~R~~hs~~~-~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVV-VGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEE-ECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 367899999998 9999999999762 889998875
No 64
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.27 E-value=0.04 Score=48.83 Aligned_cols=156 Identities=17% Similarity=0.260 Sum_probs=100.0
Q ss_pred EEEE-ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCcee
Q 016368 190 AMGS-VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDG 268 (390)
Q Consensus 190 ~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~ 268 (390)
+... .++.||.--|..+ ...+..||+.|++ =.....++...+ +-+++.+++++|.+. .-...+
T Consensus 49 GL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~----~~~~~~l~~~~F---gEGit~~~d~l~qLT---Wk~~~~ 112 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG------QSSLRKVDLETGK----VLQSVPLPPRYF---GEGITILGDKLYQLT---WKEGTG 112 (264)
T ss_dssp EEEEEETTEEEEEECSTT------EEEEEEEETTTSS----EEEEEE-TTT-----EEEEEEETTEEEEEE---SSSSEE
T ss_pred cEEecCCCEEEEeCCCCC------cEEEEEEECCCCc----EEEEEECCcccc---ceeEEEECCEEEEEE---ecCCeE
Confidence 4445 4789999888764 3588899999998 566667776666 577888999999983 234556
Q ss_pred EEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccccc------ccceeEEEECC
Q 016368 269 AIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAEL------KGAEKITAARG 342 (390)
Q Consensus 269 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~------r~~~~~~~~~g 342 (390)
.+||..+ .+.+.. .+.+..+-+++. .+.+|++-.| +..++..||++ ++....+... ..--.+..++|
T Consensus 113 f~yd~~t--l~~~~~-~~y~~EGWGLt~-dg~~Li~SDG-S~~L~~~dP~~--f~~~~~i~V~~~g~pv~~LNELE~i~G 185 (264)
T PF05096_consen 113 FVYDPNT--LKKIGT-FPYPGEGWGLTS-DGKRLIMSDG-SSRLYFLDPET--FKEVRTIQVTDNGRPVSNLNELEYING 185 (264)
T ss_dssp EEEETTT--TEEEEE-EE-SSS--EEEE-CSSCEEEE-S-SSEEEEE-TTT---SEEEEEE-EETTEE---EEEEEEETT
T ss_pred EEEcccc--ceEEEE-EecCCcceEEEc-CCCEEEEECC-ccceEEECCcc--cceEEEEEEEECCEECCCcEeEEEEcC
Confidence 7999874 555554 444456778886 6677777776 66899999986 3333333222 12234666788
Q ss_pred EEEEEeeCCceEEEEEcCCCCCcceE
Q 016368 343 RVCAVCENGERIMVVDVLASPARAWL 368 (390)
Q Consensus 343 ~l~i~g~~~~~v~~~d~~~~~~~~W~ 368 (390)
+||.--=..+.|..+|+.+.....|-
T Consensus 186 ~IyANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EEEEEETTSSEEEEEETTT-BEEEEE
T ss_pred EEEEEeCCCCeEEEEeCCCCeEEEEE
Confidence 88875444678999999887554454
No 65
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.20 E-value=0.056 Score=50.67 Aligned_cols=120 Identities=13% Similarity=0.121 Sum_probs=75.3
Q ss_pred ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCC--C-----c
Q 016368 194 VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNG--A-----K 266 (390)
Q Consensus 194 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~--~-----~ 266 (390)
.+.+|+.++.. ..+.+||..|.. =...|.+..+.. ...++.++++||++...... . .
T Consensus 75 ~gskIv~~d~~---------~~t~vyDt~t~a----v~~~P~l~~pk~---~pisv~VG~~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 75 HGSKIVAVDQS---------GRTLVYDTDTRA----VATGPRLHSPKR---CPISVSVGDKLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred cCCeEEEEcCC---------CCeEEEECCCCe----EeccCCCCCCCc---ceEEEEeCCeEEEeeccCccccccCccce
Confidence 48888888543 247899999998 666666665443 34455679999999643111 0 0
Q ss_pred eeEE--EeC--------CCCCeEecCCCCCCCCCC-------ceEEEee-CCeEEE-EeCCCCcEEEEECCCCceEEcc-
Q 016368 267 DGAI--YNV--------ELDKWKEMPEGMHAGWNG-------PAASTMN-EEELYV-VNEGKGRLSKYDADHDWWDEVI- 326 (390)
Q Consensus 267 ~~~~--yd~--------~~~~W~~~~~~~~~~~~~-------~~~~~~~-~g~lyv-~gg~~~~v~~yd~~~~~W~~i~- 326 (390)
..++ |+. ..-.|+.+++ +|..... .+.++ + +..|+| +.+.....+.||.++.+|++++
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~-PPf~~~~~~~~~~i~sYav-v~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLPP-PPFVRDRRYSDYRITSYAV-VDGRTIFVSVNGRRWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCCC-CCccccCCcccceEEEEEE-ecCCeEEEEecCCceEEEEEEcCCcceeeccc
Confidence 3343 442 2236888877 4444332 23344 6 667777 3332235799999999999998
Q ss_pred -ccccc
Q 016368 327 -ELAEL 331 (390)
Q Consensus 327 -~~p~~ 331 (390)
.||..
T Consensus 217 W~LPF~ 222 (342)
T PF07893_consen 217 WMLPFH 222 (342)
T ss_pred eecCcC
Confidence 46644
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.00 E-value=0.048 Score=51.40 Aligned_cols=263 Identities=11% Similarity=0.034 Sum_probs=139.6
Q ss_pred CCCCcHHHHHHHHhcCC--chhhHhhhH---hHHHhhcCCCCCCcccEEEEeecCCCCCCCCCCcccCCCceeEEEEeCC
Q 016368 34 LPGLPNHLADRCLSSLP--PALLFSVCH---SWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPI 108 (390)
Q Consensus 34 ~~~LP~dl~~~iL~rLP--l~~~r~Vck---~W~~l~~s~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 108 (390)
-|.=|.|.+.-.-.|+- -..-+.|.| ||+..++|-.|....-|++++.. +-.+.+||..
T Consensus 35 sp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~----------------sG~V~vfD~k 98 (487)
T KOG0310|consen 35 SPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE----------------SGHVKVFDMK 98 (487)
T ss_pred CCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC----------------cCcEEEeccc
Confidence 35568888888888887 333445555 78888999888877777776533 2357889955
Q ss_pred CCCceeC-CCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCcee-cCCCCCCCC
Q 016368 109 SSTWNPL-PAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWF-FGPQLSIPR 186 (390)
Q Consensus 109 ~~~W~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~-~~~~~~~~r 186 (390)
++.-.+. ..... +.+.. .....++.++..|+- . .-+-.||..+..-. .+.......
T Consensus 99 ~r~iLR~~~ah~a--pv~~~-------------~f~~~d~t~l~s~sD-d------~v~k~~d~s~a~v~~~l~~htDYV 156 (487)
T KOG0310|consen 99 SRVILRQLYAHQA--PVHVT-------------KFSPQDNTMLVSGSD-D------KVVKYWDLSTAYVQAELSGHTDYV 156 (487)
T ss_pred cHHHHHHHhhccC--ceeEE-------------EecccCCeEEEecCC-C------ceEEEEEcCCcEEEEEecCCccee
Confidence 5322221 11111 11100 122234445544432 1 12333444444321 111111111
Q ss_pred cceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCc
Q 016368 187 RWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAK 266 (390)
Q Consensus 187 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~ 266 (390)
-..++...++.|++.||+++ .+-.||..+.+. |..--+-..+.. --.+.-+|.+.+.. ++.
T Consensus 157 R~g~~~~~~~hivvtGsYDg--------~vrl~DtR~~~~---~v~elnhg~pVe----~vl~lpsgs~iasA----gGn 217 (487)
T KOG0310|consen 157 RCGDISPANDHIVVTGSYDG--------KVRLWDTRSLTS---RVVELNHGCPVE----SVLALPSGSLIASA----GGN 217 (487)
T ss_pred EeeccccCCCeEEEecCCCc--------eEEEEEeccCCc---eeEEecCCCcee----eEEEcCCCCEEEEc----CCC
Confidence 11122334778999999987 778899988741 433222222211 22222344555543 677
Q ss_pred eeEEEeCCCCCeEecCCCCC-CCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEE
Q 016368 267 DGAIYNVELDKWKEMPEGMH-AGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRV 344 (390)
Q Consensus 267 ~~~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l 344 (390)
.+.++|+.++. +.+.. +. ......++...-++.=.+-||-++.+-+|| +..|+.+..+..+-.--++.+. ++.-
T Consensus 218 ~vkVWDl~~G~-qll~~-~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd--~t~~Kvv~s~~~~~pvLsiavs~dd~t 293 (487)
T KOG0310|consen 218 SVKVWDLTTGG-QLLTS-MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD--TTNYKVVHSWKYPGPVLSIAVSPDDQT 293 (487)
T ss_pred eEEEEEecCCc-eehhh-hhcccceEEEEEeecCCceEeecccccceEEEE--ccceEEEEeeecccceeeEEecCCCce
Confidence 78899998654 22222 22 222222333223556677788899999999 5568888866544333445554 6777
Q ss_pred EEEeeCCceEEEE
Q 016368 345 CAVCENGERIMVV 357 (390)
Q Consensus 345 ~i~g~~~~~v~~~ 357 (390)
.++|..+.-+..-
T Consensus 294 ~viGmsnGlv~~r 306 (487)
T KOG0310|consen 294 VVIGMSNGLVSIR 306 (487)
T ss_pred EEEecccceeeee
Confidence 7776544444333
No 67
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.96 E-value=0.18 Score=44.54 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=91.4
Q ss_pred EEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC-CCccccce
Q 016368 168 AFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD-GRFSREAV 246 (390)
Q Consensus 168 ~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~-~~~~r~~~ 246 (390)
+.||.++.-+.-+...-.--+-.++.-+|.+|+..=.. +.+-..|+.+.. =+.++.... ....|.
T Consensus 172 rLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag--------naiaridp~~~~----aev~p~P~~~~~gsRr-- 237 (353)
T COG4257 172 RLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG--------NAIARIDPFAGH----AEVVPQPNALKAGSRR-- 237 (353)
T ss_pred ecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc--------cceEEcccccCC----cceecCCCcccccccc--
Confidence 56777775554333222222233444588888763222 345567777766 344433221 111111
Q ss_pred EEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcc
Q 016368 247 EAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVI 326 (390)
Q Consensus 247 ~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~ 326 (390)
.-+---|++++. ..+......||+....|.+-+. +...-...++-|.-.|++++-.-..+.+.+||+++.++++++
T Consensus 238 iwsdpig~~wit---twg~g~l~rfdPs~~sW~eypL-Pgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 238 IWSDPIGRAWIT---TWGTGSLHRFDPSVTSWIEYPL-PGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred cccCccCcEEEe---ccCCceeeEeCcccccceeeeC-CCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEec
Confidence 111234566665 2345567799999999999776 333333345554356788877767789999999999998886
Q ss_pred cccccccceeEEEECCEEEEE
Q 016368 327 ELAELKGAEKITAARGRVCAV 347 (390)
Q Consensus 327 ~~p~~r~~~~~~~~~g~l~i~ 347 (390)
.-.+.-....|-...|++..-
T Consensus 314 ~pr~n~gn~ql~gr~ge~W~~ 334 (353)
T COG4257 314 IPRPNSGNIQLDGRPGELWFT 334 (353)
T ss_pred CCCCCCCceeccCCCCceeec
Confidence 332222333344445555554
No 68
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.91 E-value=0.054 Score=48.18 Aligned_cols=179 Identities=21% Similarity=0.220 Sum_probs=102.5
Q ss_pred CCCCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC
Q 016368 162 ALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG 239 (390)
Q Consensus 162 ~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~ 239 (390)
....++++++.+++-..+.... -.+++.. ++++|+.... ...++|+.++. ++.+...+..
T Consensus 20 ~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~----------~~~~~d~~~g~----~~~~~~~~~~ 81 (246)
T PF08450_consen 20 PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSG----------GIAVVDPDTGK----VTVLADLPDG 81 (246)
T ss_dssp TTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETT----------CEEEEETTTTE----EEEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcC----------ceEEEecCCCc----EEEEeeccCC
Confidence 3468999999998765432221 2334444 6888887532 34667999998 8887766321
Q ss_pred --CccccceEEEEECCEEEEEcccCC---CC--ceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC-eEEEEeCCCCc
Q 016368 240 --RFSREAVEAVGFKGNLCMVNLKGN---GA--KDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKGR 311 (390)
Q Consensus 240 --~~~r~~~~~~~~~g~lyv~gg~g~---~~--~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~~ 311 (390)
...+..-.++--+|.+|+-.-... .. ..+.++++. .+.+.+...+..+ -+++...++ .||+.....+.
T Consensus 82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEETTTTE
T ss_pred CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeecccccce
Confidence 111111223335888888632111 11 235677777 5555544322111 234432455 58888888889
Q ss_pred EEEEECCCCc--eEE---cccccccc-cceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368 312 LSKYDADHDW--WDE---VIELAELK-GAEKITAA-RGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 312 v~~yd~~~~~--W~~---i~~~p~~r-~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
|++||..... +.. +..++... ..-++++- +|.||+..-.+..|+++|+...
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc
Confidence 9999986433 332 22223222 23456554 7899998777889999998855
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.81 E-value=0.056 Score=50.94 Aligned_cols=177 Identities=14% Similarity=0.124 Sum_probs=94.0
Q ss_pred CCcEEEeCCCCceec-CCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368 164 ASPLAFNPQSNTWFF-GPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS 242 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~ 242 (390)
-.+-+|+..+.+-.+ +..+. .-.+....--+|+|..+|+..+ -+.+||.++.. .+-.+.....+
T Consensus 48 ~rvqly~~~~~~~~k~~srFk-~~v~s~~fR~DG~LlaaGD~sG--------~V~vfD~k~r~------iLR~~~ah~ap 112 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFK-DVVYSVDFRSDGRLLAAGDESG--------HVKVFDMKSRV------ILRQLYAHQAP 112 (487)
T ss_pred cEEEEEecchhhhhhhHHhhc-cceeEEEeecCCeEEEccCCcC--------cEEEeccccHH------HHHHHhhccCc
Confidence 356667766554333 22211 0111222233799999998776 67889966533 12222111110
Q ss_pred ccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeE-ecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368 243 REAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWK-EMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW 321 (390)
Q Consensus 243 r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~ 321 (390)
-...--...++.+++.| .+......+|..+..=+ ++.. ....-....+...+++|++-||.++.+..||..+..
T Consensus 113 v~~~~f~~~d~t~l~s~---sDd~v~k~~d~s~a~v~~~l~~--htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSG---SDDKVVKYWDLSTAYVQAELSG--HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT 187 (487)
T ss_pred eeEEEecccCCeEEEec---CCCceEEEEEcCCcEEEEEecC--CcceeEeeccccCCCeEEEecCCCceEEEEEeccCC
Confidence 00011122578888884 23444557777766522 1111 111122233324789999999999999999998774
Q ss_pred eEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368 322 WDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 322 W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
..+.++....-.-.+..+ .|.+.+- .+|+.|-+||+-++
T Consensus 188 -~~v~elnhg~pVe~vl~lpsgs~ias-AgGn~vkVWDl~~G 227 (487)
T KOG0310|consen 188 -SRVVELNHGCPVESVLALPSGSLIAS-AGGNSVKVWDLTTG 227 (487)
T ss_pred -ceeEEecCCCceeeEEEcCCCCEEEE-cCCCeEEEEEecCC
Confidence 333333322221233344 4455554 66778888888753
No 70
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.81 E-value=0.079 Score=49.24 Aligned_cols=137 Identities=11% Similarity=0.092 Sum_probs=87.5
Q ss_pred CeEEEEECCCCc-cccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCC-eEecCCCCCCCCCC
Q 016368 214 RSMKKWDLKSDR-EDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDK-WKEMPEGMHAGWNG 291 (390)
Q Consensus 214 ~~~~~yd~~t~~-~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~ 291 (390)
-.+.+|+..... ...+.+.+......-. ..+.+.++|++.+. .+....+|+...++ +..... ...+-..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~---V~ai~~~~~~lv~~-----~g~~l~v~~l~~~~~l~~~~~-~~~~~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGP---VTAICSFNGRLVVA-----VGNKLYVYDLDNSKTLLKKAF-YDSPFYI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS----EEEEEEETTEEEEE-----ETTEEEEEEEETTSSEEEEEE-E-BSSSE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCc---ceEhhhhCCEEEEe-----ecCEEEEEEccCcccchhhhe-ecceEEE
Confidence 568899998841 0111666655433322 37778889995555 56778899998888 777765 4444444
Q ss_pred ceEEEeeCCeEEEEeCCCC-cEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcC
Q 016368 292 PAASTMNEEELYVVNEGKG-RLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVL 360 (390)
Q Consensus 292 ~~~~~~~~g~lyv~gg~~~-~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~ 360 (390)
.++.+ .++.|++-....+ .++.|+.+..+-..++.-..++...++..+ ++..++++....+++++...
T Consensus 133 ~sl~~-~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 133 TSLSV-FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEE-ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEec-cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 55555 7887776665555 677889877778888876666666666666 65666665556677666554
No 71
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.76 E-value=0.35 Score=43.72 Aligned_cols=172 Identities=14% Similarity=0.102 Sum_probs=82.7
Q ss_pred CCcEEEeCCCCceecCCCC-CCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368 164 ASPLAFNPQSNTWFFGPQL-SIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR 240 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~-~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~ 240 (390)
+.+.+||+.+++-...-.. ..++ +++.. ++ .+|+.++.+ ..+.+||..+.. ....-......
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~~--------~~v~~~d~~~~~----~~~~~~~~~~~ 75 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASDS--------DTIQVIDLATGE----VIGTLPSGPDP 75 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECCC--------CeEEEEECCCCc----EEEeccCCCCc
Confidence 4678888877653222111 1111 22222 33 577776543 368899998877 43321111111
Q ss_pred ccccceEEEEECC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC-cEEEEECC
Q 016368 241 FSREAVEAVGFKG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG-RLSKYDAD 318 (390)
Q Consensus 241 ~~r~~~~~~~~~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-~v~~yd~~ 318 (390)
...++.-++ .+|+.+ .......+||+.+.+-. .. .+.+.....++...+|.+++++..++ .+..||..
T Consensus 76 ----~~~~~~~~g~~l~~~~---~~~~~l~~~d~~~~~~~--~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 76 ----ELFALHPNGKILYIAN---EDDNLVTVIDIETRKVL--AE-IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred ----cEEEECCCCCEEEEEc---CCCCeEEEEECCCCeEE--eE-eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence 121222244 466653 12345778998875321 11 11111112333325788887776544 46677877
Q ss_pred CCceEEcccccccccceeEE-EECCE-EEEEeeCCceEEEEEcCCC
Q 016368 319 HDWWDEVIELAELKGAEKIT-AARGR-VCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 319 ~~~W~~i~~~p~~r~~~~~~-~~~g~-l~i~g~~~~~v~~~d~~~~ 362 (390)
+.+-. ..++.......+. ..+++ +++-+..++.+.+||+.+.
T Consensus 146 ~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 146 TYEIV--DNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred CCeEE--EEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 64322 2111111111222 22444 4444334667888988764
No 72
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=0.063 Score=50.38 Aligned_cols=151 Identities=9% Similarity=0.087 Sum_probs=88.3
Q ss_pred CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCE-EEEEcccCCCCceeEEEeC
Q 016368 195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGN-LCMVNLKGNGAKDGAIYNV 273 (390)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~ 273 (390)
.-.|.+.+|.+. .-.++..|-++|. .+.++....++-. .+...-+|. ..+.+| ..+-...||+
T Consensus 224 ~~plllvaG~d~------~lrifqvDGk~N~------~lqS~~l~~fPi~-~a~f~p~G~~~i~~s~---rrky~ysyDl 287 (514)
T KOG2055|consen 224 TAPLLLVAGLDG------TLRIFQVDGKVNP------KLQSIHLEKFPIQ-KAEFAPNGHSVIFTSG---RRKYLYSYDL 287 (514)
T ss_pred CCceEEEecCCC------cEEEEEecCccCh------hheeeeeccCccc-eeeecCCCceEEEecc---cceEEEEeec
Confidence 345888888875 1244444555554 4555443332211 222223555 444431 2344679999
Q ss_pred CCCCeEecCCCCCCC--CCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCC
Q 016368 274 ELDKWKEMPEGMHAG--WNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENG 351 (390)
Q Consensus 274 ~~~~W~~~~~~~~~~--~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~ 351 (390)
++.+-+.+.++-... -....-+. .++...++.|..|.|......|+.|----.++..-..+.+...+.+|++. ++.
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~-~~~ 365 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLAS-GGT 365 (514)
T ss_pred cccccccccCCCCcccchhheeEec-CCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEE-cCC
Confidence 999988877632111 11222233 77888888888999999988888885544444333444444445556666 444
Q ss_pred ceEEEEEcCCCC
Q 016368 352 ERIMVVDVLASP 363 (390)
Q Consensus 352 ~~v~~~d~~~~~ 363 (390)
..||+||+....
T Consensus 366 GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 366 GEVYVWNLRQNS 377 (514)
T ss_pred ceEEEEecCCcc
Confidence 499999998873
No 73
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.63 E-value=0.11 Score=46.06 Aligned_cols=206 Identities=15% Similarity=0.119 Sum_probs=107.7
Q ss_pred eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEee-cCeEEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368 100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV-RNNLVLIAATTPHFLPALASPLAFNPQSNTWFF 178 (390)
Q Consensus 100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~ 178 (390)
-.++.+|+.++.-..+... . +. .++.. .++.+++... ....++|+.+++++.
T Consensus 22 ~~i~~~~~~~~~~~~~~~~-~-~~-----------------G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLP-G-PN-----------------GMAFDRPDGRLYVADS--------GGIAVVDPDTGKVTV 74 (246)
T ss_dssp TEEEEEETTTTEEEEEESS-S-EE-----------------EEEEECTTSEEEEEET--------TCEEEEETTTTEEEE
T ss_pred CEEEEEECCCCeEEEEecC-C-Cc-----------------eEEEEccCCEEEEEEc--------CceEEEecCCCcEEE
Confidence 4678888887765443211 1 11 33333 3455555432 345677999999987
Q ss_pred CCCCCC---CCcceEEEE--ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc-CCCCCccccceEEEEE-
Q 016368 179 GPQLSI---PRRWCAMGS--VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ-LKDGRFSREAVEAVGF- 251 (390)
Q Consensus 179 ~~~~~~---~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~-~~~~~~~r~~~~~~~~- 251 (390)
+...+. +.....-.+ -+|.||+..-............++++++. ++ .+.+.. +.. ..+.+..
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~~~~~~~~~~------pNGi~~s~ 143 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK----VTVVADGLGF------PNGIAFSP 143 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE----EEEEEEEESS------EEEEEEET
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce----EEEEecCccc------ccceEECC
Confidence 765531 233332223 37888886433221001111578899998 55 444432 222 1344433
Q ss_pred CC-EEEEEcccCCCCceeEEEeCCCC--CeEecCC--CCCCCC-CCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEc
Q 016368 252 KG-NLCMVNLKGNGAKDGAIYNVELD--KWKEMPE--GMHAGW-NGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEV 325 (390)
Q Consensus 252 ~g-~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~--~~~~~~-~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i 325 (390)
++ .+|+. ......+..|+.... ++..... ..+... .--++++..+|.||+.....+.|++||++...-..+
T Consensus 144 dg~~lyv~---ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 144 DGKTLYVA---DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREI 220 (246)
T ss_dssp TSSEEEEE---ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEE
T ss_pred cchheeec---ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEE
Confidence 44 57776 234556778887543 3432211 011211 123455545799999877778999999995545545
Q ss_pred ccccccccceeEEEE---CCEEEEEe
Q 016368 326 IELAELKGAEKITAA---RGRVCAVC 348 (390)
Q Consensus 326 ~~~p~~r~~~~~~~~---~g~l~i~g 348 (390)
. +|.. ....++.- .+.|||..
T Consensus 221 ~-~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 221 E-LPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp E--SSS-SEEEEEEESTTSSEEEEEE
T ss_pred c-CCCC-CEEEEEEECCCCCEEEEEe
Confidence 4 5533 22223332 35688763
No 74
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.55 E-value=0.57 Score=42.31 Aligned_cols=174 Identities=12% Similarity=0.060 Sum_probs=82.8
Q ss_pred CCcEEEeCCCCceec-CCCCCCCCcceEEEEE-C-CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368 164 ASPLAFNPQSNTWFF-GPQLSIPRRWCAMGSV-G-GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR 240 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~-~~~~~~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~ 240 (390)
+.+.+||..+++... ++....+ ...+.. + +.+|+.++.+ ..+.+||+.+.. .+..++...
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~g~~l~~~~~~~--------~~l~~~d~~~~~------~~~~~~~~~ 115 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGPDP---ELFALHPNGKILYIANEDD--------NLVTVIDIETRK------VLAEIPVGV 115 (300)
T ss_pred CeEEEEECCCCcEEEeccCCCCc---cEEEECCCCCEEEEEcCCC--------CeEEEEECCCCe------EEeEeeCCC
Confidence 468899998876643 3221111 122222 3 4566654332 378899998765 122221111
Q ss_pred ccccceEEE-EECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeC-CCCcEEEEECC
Q 016368 241 FSREAVEAV-GFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNE-GKGRLSKYDAD 318 (390)
Q Consensus 241 ~~r~~~~~~-~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg-~~~~v~~yd~~ 318 (390)
. ..+++ .-+|++++++.. .......||..+.+-..... . ..... .+....+++.+++++ .++.+..||.+
T Consensus 116 ~---~~~~~~~~dg~~l~~~~~--~~~~~~~~d~~~~~~~~~~~-~-~~~~~-~~~~s~dg~~l~~~~~~~~~v~i~d~~ 187 (300)
T TIGR03866 116 E---PEGMAVSPDGKIVVNTSE--TTNMAHFIDTKTYEIVDNVL-V-DQRPR-FAEFTADGKELWVSSEIGGTVSVIDVA 187 (300)
T ss_pred C---cceEEECCCCCEEEEEec--CCCeEEEEeCCCCeEEEEEE-c-CCCcc-EEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence 1 12222 246666666411 12234567876654322111 1 11111 222225666554544 46789999998
Q ss_pred CCceE-Ecc-ccc----ccccceeEEEE-CC-EEEEEeeCCceEEEEEcCCC
Q 016368 319 HDWWD-EVI-ELA----ELKGAEKITAA-RG-RVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 319 ~~~W~-~i~-~~p----~~r~~~~~~~~-~g-~l~i~g~~~~~v~~~d~~~~ 362 (390)
+.+.. .+. ..+ ......++... ++ .+|+..+..+.+.+||+.+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 188 TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 76432 121 000 11112233332 34 45654455567888988654
No 75
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.39 E-value=1.3 Score=48.22 Aligned_cols=153 Identities=9% Similarity=0.080 Sum_probs=88.2
Q ss_pred CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC----------CCCCccccceEEEEE-C-CEEEEEcccC
Q 016368 195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL----------KDGRFSREAVEAVGF-K-GNLCMVNLKG 262 (390)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~----------~~~~~~r~~~~~~~~-~-g~lyv~gg~g 262 (390)
++.|||....+ +.+++||+.++. ...+..- .....-....++++. + +.||+. .
T Consensus 694 ~g~LyVad~~~--------~~I~v~d~~~g~----v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVA---D 758 (1057)
T PLN02919 694 NEKVYIAMAGQ--------HQIWEYNISDGV----TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIA---D 758 (1057)
T ss_pred CCeEEEEECCC--------CeEEEEECCCCe----EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEE---E
Confidence 67899875433 368888887765 4332110 000000001233333 3 359988 3
Q ss_pred CCCceeEEEeCCCCCeEecC--C-----C---CCC---------CCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceE
Q 016368 263 NGAKDGAIYNVELDKWKEMP--E-----G---MHA---------GWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWD 323 (390)
Q Consensus 263 ~~~~~~~~yd~~~~~W~~~~--~-----~---~~~---------~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~ 323 (390)
.+.+.+.+||+.++.-..+. . . ... ...-.++++..+|.|||....++.|.+||+++....
T Consensus 759 s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 759 SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 34567889998876532211 0 0 000 001123333367899999988889999999988776
Q ss_pred Ecccccc------------cccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368 324 EVIELAE------------LKGAEKITAA-RGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 324 ~i~~~p~------------~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
.+..... .....++++. +|+|||.-..++.|.++|+.+.
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 5542211 1123455554 7889998777788999998775
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0035 Score=55.87 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=33.8
Q ss_pred CCCCCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCC
Q 016368 32 LLLPGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPY 69 (390)
Q Consensus 32 ~~~~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~ 69 (390)
..|-.||||+++.||+.|| +.++..|||||+++.++..
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 3367899999999999999 8888899999999988865
No 77
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.35 E-value=0.092 Score=46.59 Aligned_cols=111 Identities=13% Similarity=0.071 Sum_probs=75.2
Q ss_pred eEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEE
Q 016368 246 VEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDE 324 (390)
Q Consensus 246 ~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~ 324 (390)
.+... .+|.+|--.|. +|......||+++++-..... ++....+-+++. .+++||.+--.++..++||.++ .++
T Consensus 48 QGL~~~~~g~LyESTG~-yG~S~l~~~d~~tg~~~~~~~-l~~~~FgEGit~-~~d~l~qLTWk~~~~f~yd~~t--l~~ 122 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGL-YGQSSLRKVDLETGKVLQSVP-LPPRYFGEGITI-LGDKLYQLTWKEGTGFVYDPNT--LKK 122 (264)
T ss_dssp EEEEEEETTEEEEEECS-TTEEEEEEEETTTSSEEEEEE--TTT--EEEEEE-ETTEEEEEESSSSEEEEEETTT--TEE
T ss_pred ccEEecCCCEEEEeCCC-CCcEEEEEEECCCCcEEEEEE-CCccccceeEEE-ECCEEEEEEecCCeEEEEcccc--ceE
Confidence 34444 57888876432 234566799999998766555 666777888887 9999999999999999999985 677
Q ss_pred cccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368 325 VIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 325 i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
+.+.+-+..+-+++.-+ +-++++.+...++.+|+.+-
T Consensus 123 ~~~~~y~~EGWGLt~dg-~~Li~SDGS~~L~~~dP~~f 159 (264)
T PF05096_consen 123 IGTFPYPGEGWGLTSDG-KRLIMSDGSSRLYFLDPETF 159 (264)
T ss_dssp EEEEE-SSS--EEEECS-SCEEEE-SSSEEEEE-TTT-
T ss_pred EEEEecCCcceEEEcCC-CEEEEECCccceEEECCccc
Confidence 77666556667787444 44555455678999998763
No 78
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.24 E-value=0.75 Score=40.41 Aligned_cols=173 Identities=10% Similarity=0.089 Sum_probs=81.6
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcce-EEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWC-AMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF 241 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~ 241 (390)
+.+.+||..+++-... ........ .+... +++.+++++.+. .+.+||..++. -...-......
T Consensus 31 g~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~--------~i~i~~~~~~~----~~~~~~~~~~~- 95 (289)
T cd00200 31 GTIKVWDLETGELLRT--LKGHTGPVRDVAASADGTYLASGSSDK--------TIRLWDLETGE----CVRTLTGHTSY- 95 (289)
T ss_pred cEEEEEEeeCCCcEEE--EecCCcceeEEEECCCCCEEEEEcCCC--------eEEEEEcCccc----ceEEEeccCCc-
Confidence 4678888876642111 11111111 22222 444555655543 78889988754 22111111111
Q ss_pred cccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEe-cCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCC
Q 016368 242 SREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKE-MPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADH 319 (390)
Q Consensus 242 ~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~ 319 (390)
..++... ++++++.++ ......+||+.+.+-.. +.. .......+....++.+++.+..++.+..||..+
T Consensus 96 ---i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 96 ---VSSVAFSPDGRILSSSS---RDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred ---EEEEEEcCCCCEEEEec---CCCeEEEEECCCcEEEEEecc---CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 1223322 345666541 13456789887543222 221 111112233213356666665588999999874
Q ss_pred CceEEcccccccc-cceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368 320 DWWDEVIELAELK-GAEKITAA-RGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 320 ~~W~~i~~~p~~r-~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
.+ .+..+.... ....+... +++.+++++.+..+.+||+...
T Consensus 167 ~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 167 GK--CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209 (289)
T ss_pred cc--cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence 33 222222222 12233333 4435555555778999998753
No 79
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.98 E-value=0.62 Score=43.98 Aligned_cols=195 Identities=10% Similarity=0.012 Sum_probs=99.5
Q ss_pred EEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEE
Q 016368 142 SLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWD 220 (390)
Q Consensus 142 ~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd 220 (390)
.+....+.|+++|. -...+++|...++.--.+- +..-+.--+.... ++..++-||.++ .+.+|+
T Consensus 87 l~s~n~G~~l~ag~------i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg--------~V~vW~ 151 (476)
T KOG0646|consen 87 LASSNLGYFLLAGT------ISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDG--------AVLVWL 151 (476)
T ss_pred eecCCCceEEEeec------ccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCc--------cEEEEE
Confidence 33445577777774 2357999999888543322 1111111122222 677777777765 556654
Q ss_pred CCCCccccccEEcccCCCCCccccceEEEE---------ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCC
Q 016368 221 LKSDREDWKWEKKAQLKDGRFSREAVEAVG---------FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNG 291 (390)
Q Consensus 221 ~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~---------~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~ 291 (390)
..+-... =..-...|...+. .|+..+ .+.++|-.+ -.+..-+||+..+.--. . ...+..-
T Consensus 152 l~~lv~a--~~~~~~~p~~~f~--~HtlsITDl~ig~Gg~~~rl~TaS----~D~t~k~wdlS~g~LLl--t-i~fp~si 220 (476)
T KOG0646|consen 152 LTDLVSA--DNDHSVKPLHIFS--DHTLSITDLQIGSGGTNARLYTAS----EDRTIKLWDLSLGVLLL--T-ITFPSSI 220 (476)
T ss_pred EEeeccc--ccCCCccceeeec--cCcceeEEEEecCCCccceEEEec----CCceEEEEEeccceeeE--E-EecCCcc
Confidence 4221100 0000001111110 122221 244555553 34455678877663221 1 2233333
Q ss_pred ceEEEeeCCeEEEEeCCCCcEEEEECCCCc-e-------------EEccccccccc--ceeEEEE--CCEEEEEeeCCce
Q 016368 292 PAASTMNEEELYVVNEGKGRLSKYDADHDW-W-------------DEVIELAELKG--AEKITAA--RGRVCAVCENGER 353 (390)
Q Consensus 292 ~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~-W-------------~~i~~~p~~r~--~~~~~~~--~g~l~i~g~~~~~ 353 (390)
.++++...++.+.+|+.+|.++..+...-. - +++..+...+. ..+|.++ +|.+.+.|..++.
T Consensus 221 ~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~ 300 (476)
T KOG0646|consen 221 KAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK 300 (476)
T ss_pred eeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC
Confidence 444443567777788888888877665321 0 01111112222 4444443 8999999888889
Q ss_pred EEEEEcCCC
Q 016368 354 IMVVDVLAS 362 (390)
Q Consensus 354 v~~~d~~~~ 362 (390)
|-+||+...
T Consensus 301 VcvWdi~S~ 309 (476)
T KOG0646|consen 301 VCVWDIYSK 309 (476)
T ss_pred EEEEecchH
Confidence 999999875
No 80
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.97 E-value=1.4 Score=41.02 Aligned_cols=179 Identities=11% Similarity=0.030 Sum_probs=89.2
Q ss_pred CCcEEEeCCC-CceecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEECC-CCccccccEEcccCCCC
Q 016368 164 ASPLAFNPQS-NTWFFGPQLSIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDLK-SDREDWKWEKKAQLKDG 239 (390)
Q Consensus 164 ~~~~~~dp~t-~~W~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~-t~~~~~~W~~~~~~~~~ 239 (390)
+.+.+|+..+ ++++.+...+..-..+.++.- ++ .||+.+.. ...+.+|+.. ++. ++.+...+..
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~--------~~~i~~~~~~~~g~----l~~~~~~~~~ 79 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP--------EFRVLSYRIADDGA----LTFAAESPLP 79 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC--------CCcEEEEEECCCCc----eEEeeeecCC
Confidence 5778888754 466655444332222223222 34 56775432 1366777775 445 6655443322
Q ss_pred CccccceEEEE-ECCE-EEEEcccCCCCceeEEEeCCCCC-e-EecCCCCCCCCCCceEEEeeC-CeEEEEeCCCCcEEE
Q 016368 240 RFSREAVEAVG-FKGN-LCMVNLKGNGAKDGAIYNVELDK-W-KEMPEGMHAGWNGPAASTMNE-EELYVVNEGKGRLSK 314 (390)
Q Consensus 240 ~~~r~~~~~~~-~~g~-lyv~gg~g~~~~~~~~yd~~~~~-W-~~~~~~~~~~~~~~~~~~~~~-g~lyv~gg~~~~v~~ 314 (390)
.. ...++. -+++ +|+.+ .+...+.+||++++. - ..+.. .+.....+.++...+ ..+|+....++.+.+
T Consensus 80 ~~---p~~i~~~~~g~~l~v~~---~~~~~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 80 GS---PTHISTDHQGRFLFSAS---YNANCVSVSPLDKDGIPVAPIQI-IEGLEGCHSANIDPDNRTLWVPCLKEDRIRL 152 (330)
T ss_pred CC---ceEEEECCCCCEEEEEE---cCCCeEEEEEECCCCCCCCceee-ccCCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence 11 122332 3454 66652 234556788886431 1 11221 111112233333134 467777767789999
Q ss_pred EECCCCc-eEEcc----cccccccceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368 315 YDADHDW-WDEVI----ELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 315 yd~~~~~-W~~i~----~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~ 361 (390)
||..++. ..... ..+.......++.. +..+|+.....+.+.+||+..
T Consensus 153 ~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 153 FTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred EEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 9987632 22110 11112222334444 346778766677899998864
No 81
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.89 E-value=0.49 Score=44.64 Aligned_cols=183 Identities=11% Similarity=0.120 Sum_probs=96.0
Q ss_pred eEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCC---cceEEEEECCE-EEEEeccCCCCCCCccCeEEEEECCC
Q 016368 148 NLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPR---RWCAMGSVGGV-VYVASGVGAHYRGDVARSMKKWDLKS 223 (390)
Q Consensus 148 ~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r---~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t 223 (390)
.+++++|... .-.++..|-.+|. .+..+...+ .....+ -+|. ..+++|.. .-+++||.++
T Consensus 226 plllvaG~d~-----~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~-p~G~~~i~~s~rr--------ky~ysyDle~ 289 (514)
T KOG2055|consen 226 PLLLVAGLDG-----TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFA-PNGHSVIFTSGRR--------KYLYSYDLET 289 (514)
T ss_pred ceEEEecCCC-----cEEEEEecCccCh--hheeeeeccCccceeeec-CCCceEEEecccc--------eEEEEeeccc
Confidence 4677776633 2356666777764 443333222 211222 2454 66665543 3678999999
Q ss_pred CccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCce--eEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe
Q 016368 224 DREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKD--GAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE 301 (390)
Q Consensus 224 ~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~--~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~ 301 (390)
.+ -+++.++..-...-...-.+..++.+.++ .++. +......|+.|..--. + .+........ -+++
T Consensus 290 ak----~~k~~~~~g~e~~~~e~FeVShd~~fia~-----~G~~G~I~lLhakT~eli~s~K-i-eG~v~~~~fs-Sdsk 357 (514)
T KOG2055|consen 290 AK----VTKLKPPYGVEEKSMERFEVSHDSNFIAI-----AGNNGHIHLLHAKTKELITSFK-I-EGVVSDFTFS-SDSK 357 (514)
T ss_pred cc----cccccCCCCcccchhheeEecCCCCeEEE-----cccCceEEeehhhhhhhhheee-e-ccEEeeEEEe-cCCc
Confidence 88 77776643211000012233355555555 2333 3455666777654322 2 2222222222 5666
Q ss_pred EEEEeCCCCcEEEEECCCCc----eEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCC
Q 016368 302 LYVVNEGKGRLSKYDADHDW----WDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 302 lyv~gg~~~~v~~yd~~~~~----W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~ 361 (390)
..++-|..|.||+||..++. |..-+.+ ....-|...++..+.+|...+-|-+||-.+
T Consensus 358 ~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v---~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLRQNSCLHRFVDDGSV---HGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EEEEEcCCceEEEEecCCcceEEEEeecCcc---ceeeeeecCCCceEEeccCcceEEEeccch
Confidence 66665567799999999874 3332221 112224445788777876666666777433
No 82
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.83 E-value=1.2 Score=39.15 Aligned_cols=173 Identities=11% Similarity=0.120 Sum_probs=83.9
Q ss_pred CCcEEEeCCCCceecCCCCCCCC-cceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPR-RWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF 241 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r-~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~ 241 (390)
..+.+||..+++... .+.... .-.++... ++++++.++.+. .+.+||..+... -..+..... .
T Consensus 73 ~~i~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~---~~~~~~~~~--~ 137 (289)
T cd00200 73 KTIRLWDLETGECVR--TLTGHTSYVSSVAFSPDGRILSSSSRDK--------TIKVWDVETGKC---LTTLRGHTD--W 137 (289)
T ss_pred CeEEEEEcCcccceE--EEeccCCcEEEEEEcCCCCEEEEecCCC--------eEEEEECCCcEE---EEEeccCCC--c
Confidence 578888987752211 111111 11222222 346666665332 688899886541 122221111 1
Q ss_pred cccceEEEEEC-CEEEEEcccCCCCceeEEEeCCCCCe-EecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCC
Q 016368 242 SREAVEAVGFK-GNLCMVNLKGNGAKDGAIYNVELDKW-KEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADH 319 (390)
Q Consensus 242 ~r~~~~~~~~~-g~lyv~gg~g~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~ 319 (390)
..++.... +.+++.+. ....+.+||..+.+- ..... .......+....++..+++++.++.+..||..+
T Consensus 138 ---i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 138 ---VNSVAFSPDGTFVASSS---QDGTIKLWDLRTGKCVATLTG---HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred ---EEEEEEcCcCCEEEEEc---CCCcEEEEEccccccceeEec---CccccceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 12333333 45555531 134567888864431 11111 111122333224555666777788999999876
Q ss_pred CceEEcccccccc-cceeEEEEC-CEEEEEeeCCceEEEEEcCCC
Q 016368 320 DWWDEVIELAELK-GAEKITAAR-GRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 320 ~~W~~i~~~p~~r-~~~~~~~~~-g~l~i~g~~~~~v~~~d~~~~ 362 (390)
..- +..+.... ....+.... +.+++.+..+..+.+||+.+.
T Consensus 209 ~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 209 GKC--LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred Cce--ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 433 22221111 223333333 556665454778999998754
No 83
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.74 E-value=1.8 Score=40.64 Aligned_cols=234 Identities=17% Similarity=0.155 Sum_probs=118.3
Q ss_pred CCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeC--CCC
Q 016368 97 NSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNP--QSN 174 (390)
Q Consensus 97 ~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp--~t~ 174 (390)
......+.||..++++..+........ |++ -++...++++|+..... .....+..|.. .++
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~-------Ps~-------l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g 74 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEGEN-------PSW-------LAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTG 74 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEESSS-------ECC-------EEE-TTSSEEEEEETTS---STTTEEEEEEEETTTT
T ss_pred CCcEEEEEEcCCCCCceEeeeecCCCC-------Cce-------EEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcc
Confidence 345667788889999887664322111 111 22223555555554321 12345555554 446
Q ss_pred ceecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc-------CCC--CCcc
Q 016368 175 TWFFGPQLSIPRRWCAMGSV---GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ-------LKD--GRFS 242 (390)
Q Consensus 175 ~W~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~-------~~~--~~~~ 242 (390)
+.+.+...+..-...+...+ +..||+.--.. ..+.+|+...+.. =..... -+. ....
T Consensus 75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~--------g~v~v~~l~~~g~---l~~~~~~~~~~g~g~~~~rq~~ 143 (345)
T PF10282_consen 75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG--------GSVSVFPLDDDGS---LGEVVQTVRHEGSGPNPDRQEG 143 (345)
T ss_dssp EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT--------TEEEEEEECTTSE---EEEEEEEEESEEEESSTTTTSS
T ss_pred eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC--------CeEEEEEccCCcc---cceeeeecccCCCCCccccccc
Confidence 77777665533333333444 44566654222 3677888776420 111110 011 0111
Q ss_pred ccceEEEEE-CC-EEEEEcccCCCCceeEEEeCCCCC--eEecCCC-CCCCC-CCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368 243 REAVEAVGF-KG-NLCMVNLKGNGAKDGAIYNVELDK--WKEMPEG-MHAGW-NGPAASTMNEEELYVVNEGKGRLSKYD 316 (390)
Q Consensus 243 r~~~~~~~~-~g-~lyv~gg~g~~~~~~~~yd~~~~~--W~~~~~~-~~~~~-~~~~~~~~~~g~lyv~gg~~~~v~~yd 316 (390)
...|.+... +| .+|+. ..+...+.+|+...+. ....... .+.+. ..+.+...-+..+||+...++.+.+|+
T Consensus 144 ~h~H~v~~~pdg~~v~v~---dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVP---DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp TCEEEEEE-TTSSEEEEE---ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccceeEEECCCCCEEEEE---ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence 113555544 34 57776 3455677888887665 6543221 11211 122333212357899988888666665
Q ss_pred CC--CCceEEccc---ccccc----cceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368 317 AD--HDWWDEVIE---LAELK----GAEKITAA--RGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 317 ~~--~~~W~~i~~---~p~~r----~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~ 361 (390)
.. +..++.+.. +|... ....+... +..||+-..+.+.|.+|++..
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 55 666766553 33211 23445454 445788766777899999843
No 84
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.73 E-value=0.27 Score=44.73 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=71.3
Q ss_pred ceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEE
Q 016368 245 AVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDE 324 (390)
Q Consensus 245 ~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~ 324 (390)
+.-++.+++| |++. ..+..+..+++..+..+...-. ....+.++. .++|++.|-|..++.+..||.+.+.--.
T Consensus 322 aVNvVdfd~k-yIVs--ASgDRTikvW~~st~efvRtl~---gHkRGIACl-QYr~rlvVSGSSDntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 322 AVNVVDFDDK-YIVS--ASGDRTIKVWSTSTCEFVRTLN---GHKRGIACL-QYRDRLVVSGSSDNTIRLWDIECGACLR 394 (499)
T ss_pred heeeeccccc-eEEE--ecCCceEEEEeccceeeehhhh---cccccceeh-hccCeEEEecCCCceEEEEeccccHHHH
Confidence 3456667888 5553 2345677788888877655433 222333333 3899999999999999999999876544
Q ss_pred cccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368 325 VIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 325 i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
+-+-. -.-.-+.-++++-.|-|+-++.|-+||....
T Consensus 395 vLeGH--EeLvRciRFd~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 395 VLEGH--EELVRCIRFDNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred HHhch--HHhhhheeecCceeeeccccceEEEEecccc
Confidence 43211 1112366677777777666778888887664
No 85
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.71 E-value=1.8 Score=40.29 Aligned_cols=195 Identities=13% Similarity=0.067 Sum_probs=92.7
Q ss_pred cCeEEEEEeecCCCCCCCCCcEEEeCC-CCceecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEECC
Q 016368 146 RNNLVLIAATTPHFLPALASPLAFNPQ-SNTWFFGPQLSIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDLK 222 (390)
Q Consensus 146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~-t~~W~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~ 222 (390)
+++.+++++. ..+.+.+|+.. +++++.+...+.+..-+.++.. ++ .||+..-. ...+.+||..
T Consensus 45 d~~~lyv~~~------~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~--------~~~v~v~~~~ 110 (330)
T PRK11028 45 DKRHLYVGVR------PEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN--------ANCVSVSPLD 110 (330)
T ss_pred CCCEEEEEEC------CCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC--------CCeEEEEEEC
Confidence 4556666543 22567777775 4566544433322221222222 44 46665422 2477788886
Q ss_pred CCccccccEEcccCCCCCccccceEEEEE-CC-EEEEEcccCCCCceeEEEeCCCC-CeEecCC---CCCCCCCCceEEE
Q 016368 223 SDREDWKWEKKAQLKDGRFSREAVEAVGF-KG-NLCMVNLKGNGAKDGAIYNVELD-KWKEMPE---GMHAGWNGPAAST 296 (390)
Q Consensus 223 t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g-~lyv~gg~g~~~~~~~~yd~~~~-~W~~~~~---~~~~~~~~~~~~~ 296 (390)
++... .+.+...+.... .+.+++. ++ .+|+. +.+...+.+||..+. ....... ..+.+.....++.
T Consensus 111 ~~g~~--~~~~~~~~~~~~---~~~~~~~p~g~~l~v~---~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~ 182 (330)
T PRK11028 111 KDGIP--VAPIQIIEGLEG---CHSANIDPDNRTLWVP---CLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF 182 (330)
T ss_pred CCCCC--CCceeeccCCCc---ccEeEeCCCCCEEEEe---eCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence 43200 122222221111 2444433 44 56666 334566889998763 3221100 0111111112332
Q ss_pred eeC-CeEEEEeCCCCcEEEEECC--CCceEEcc---cccc----cccceeEEEE-CC-EEEEEeeCCceEEEEEcCCC
Q 016368 297 MNE-EELYVVNEGKGRLSKYDAD--HDWWDEVI---ELAE----LKGAEKITAA-RG-RVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 297 ~~~-g~lyv~gg~~~~v~~yd~~--~~~W~~i~---~~p~----~r~~~~~~~~-~g-~l~i~g~~~~~v~~~d~~~~ 362 (390)
..+ ..+|+....++.+.+||.. +.+.+.+. .+|. ++....+... +| .+|+.....+.+.+||+...
T Consensus 183 ~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 183 HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 133 3577776667788777775 44554443 2322 2222223333 34 57776455668888887543
No 86
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.71 E-value=2.1 Score=41.17 Aligned_cols=145 Identities=10% Similarity=-0.007 Sum_probs=79.1
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS 242 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~ 242 (390)
..++++|..+++...+..........+ ..-++ .|++..... ....++.+|..++. .+.+........
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~-~spDg~~l~~~~~~~------~~~~i~~~d~~~~~----~~~l~~~~~~~~- 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPA-FSPDGSKLAVSLSKD------GNPDIYVMDLDGKQ----LTRLTNGPGIDT- 281 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceE-ECCCCCEEEEEECCC------CCccEEEEECCCCC----EEECCCCCCCCC-
Confidence 579999999887666554332222211 12244 465544322 22478999999887 666654322111
Q ss_pred ccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC---cEEEEECC
Q 016368 243 REAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG---RLSKYDAD 318 (390)
Q Consensus 243 r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~---~v~~yd~~ 318 (390)
.....-+|+ |++.... .+...+.++|..+..++.+.. . ...........+|+.+++....+ .++.+|..
T Consensus 282 ---~~~~s~dg~~l~~~s~~-~g~~~iy~~d~~~~~~~~l~~-~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 282 ---EPSWSPDGKSIAFTSDR-GGSPQIYMMDADGGEVRRLTF-R--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred ---CEEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeec-C--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 111223554 5444311 123467788888888776654 1 11212222225666666655433 89999999
Q ss_pred CCceEEccc
Q 016368 319 HDWWDEVIE 327 (390)
Q Consensus 319 ~~~W~~i~~ 327 (390)
+..++.+..
T Consensus 355 ~~~~~~l~~ 363 (417)
T TIGR02800 355 GGGERVLTD 363 (417)
T ss_pred CCCeEEccC
Confidence 877766653
No 87
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.53 E-value=1.5 Score=40.28 Aligned_cols=145 Identities=12% Similarity=0.123 Sum_probs=86.3
Q ss_pred CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEE-cccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeC
Q 016368 195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEK-KAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNV 273 (390)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~-~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~ 273 (390)
+..+.+.||.++ ..++++..++. |-- +..-.... -.....++|.+...|+ -...+.+|+.
T Consensus 75 ~~~l~aTGGgDD--------~AflW~~~~ge----~~~eltgHKDSV----t~~~FshdgtlLATGd---msG~v~v~~~ 135 (399)
T KOG0296|consen 75 NNNLVATGGGDD--------LAFLWDISTGE----FAGELTGHKDSV----TCCSFSHDGTLLATGD---MSGKVLVFKV 135 (399)
T ss_pred CCceEEecCCCc--------eEEEEEccCCc----ceeEecCCCCce----EEEEEccCceEEEecC---CCccEEEEEc
Confidence 567788888775 67889998888 642 22111111 1334456777777741 1233567776
Q ss_pred CCC--CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCC
Q 016368 274 ELD--KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENG 351 (390)
Q Consensus 274 ~~~--~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~ 351 (390)
.++ +|......-...+ +..=..+.+++.|..++.+|+|......-.++-.-+..+...+...-+|+..+.|..+
T Consensus 136 stg~~~~~~~~e~~dieW----l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEW----LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred ccCceEEEeecccCceEE----EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 655 5765432100101 0000246788888899999999988764444332222233334444478877777778
Q ss_pred ceEEEEEcCCC
Q 016368 352 ERIMVVDVLAS 362 (390)
Q Consensus 352 ~~v~~~d~~~~ 362 (390)
..|.+||+++.
T Consensus 212 gti~~Wn~ktg 222 (399)
T KOG0296|consen 212 GTIIVWNPKTG 222 (399)
T ss_pred ceEEEEecCCC
Confidence 89999999885
No 88
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.50 E-value=2.7 Score=41.07 Aligned_cols=185 Identities=11% Similarity=0.067 Sum_probs=93.9
Q ss_pred ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCe-EEEEEeecCCCCCCCCCcEEEeCCCCcee
Q 016368 99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNN-LVLIAATTPHFLPALASPLAFNPQSNTWF 177 (390)
Q Consensus 99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gG~~~~~~~~~~~~~~~dp~t~~W~ 177 (390)
...++.+|+.+++-..+...+. .... ....-++. +++..... ...+++++|..+++.+
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g-~~~~---------------~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~tg~~~ 299 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPG-INGA---------------PRFSPDGKKLALVLSKD-----GQPEIYVVDIATKALT 299 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCC-CcCC---------------eeECCCCCEEEEEEeCC-----CCeEEEEEECCCCCeE
Confidence 4568888988877666654443 1111 12222344 43433221 1257999999999887
Q ss_pred cCCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEE
Q 016368 178 FGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLC 256 (390)
Q Consensus 178 ~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~ly 256 (390)
.+......-... ...-++ .|++..... ....++++|..++. ++.+..-... . ......-+|+..
T Consensus 300 ~lt~~~~~~~~p-~wSpDG~~I~f~s~~~------g~~~Iy~~dl~~g~----~~~Lt~~g~~-~---~~~~~SpDG~~l 364 (448)
T PRK04792 300 RITRHRAIDTEP-SWHPDGKSLIFTSERG------GKPQIYRVNLASGK----VSRLTFEGEQ-N---LGGSITPDGRSM 364 (448)
T ss_pred ECccCCCCccce-EECCCCCEEEEEECCC------CCceEEEEECCCCC----EEEEecCCCC-C---cCeeECCCCCEE
Confidence 765432111111 111244 455543222 22578999999888 8776421111 1 111223355433
Q ss_pred EEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeC-CCC--cEEEEECCCCceEE
Q 016368 257 MVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNE-GKG--RLSKYDADHDWWDE 324 (390)
Q Consensus 257 v~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg-~~~--~v~~yd~~~~~W~~ 324 (390)
++.....+...+.++|+.++..+.+... ... ..+... .+|+..++.. ..+ .++.+|.+ ..+..
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~-~~d-~~ps~s--pdG~~I~~~~~~~g~~~l~~~~~~-G~~~~ 430 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQVLTST-RLD-ESPSVA--PNGTMVIYSTTYQGKQVLAAVSID-GRFKA 430 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeEEccCC-CCC-CCceEC--CCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence 3322222344567899998887776542 111 122333 5665555533 222 57777764 33443
No 89
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.41 E-value=0.3 Score=44.22 Aligned_cols=110 Identities=12% Similarity=0.195 Sum_probs=66.4
Q ss_pred CCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC----
Q 016368 162 ALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL---- 236 (390)
Q Consensus 162 ~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~---- 236 (390)
....+-.||+.+.+|..+..-..... ..+... +++||+.|-.... ......+..||.++.+ |..++..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~~~~~Llv~G~ft~~--~~~~~~la~yd~~~~~----w~~~~~~~s~~ 86 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTV-TDLQWASNNQLLVGGNFTLN--GTNSSNLATYDFKNQT----WSSLGGGSSNS 86 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEE-EEEEEecCCEEEEEEeeEEC--CCCceeEEEEecCCCe----eeecCCccccc
Confidence 46678899999999998875422211 233333 7788888866542 2245678999999999 9988773
Q ss_pred -CCCCccccceEEEEECC-EEEEEcccCCCCceeEEEeCCCCCeEecCC
Q 016368 237 -KDGRFSREAVEAVGFKG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPE 283 (390)
Q Consensus 237 -~~~~~~r~~~~~~~~~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~ 283 (390)
|.+.. .......++ .+++-|....+......| ...+|+.+..
T Consensus 87 ipgpv~---a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 87 IPGPVT---ALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CCCcEE---EEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 22211 111111233 566664322233334556 4668988776
No 90
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=95.36 E-value=1.7 Score=37.95 Aligned_cols=177 Identities=10% Similarity=0.070 Sum_probs=94.2
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF 241 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~ 241 (390)
..+-.||..++.=..+...-.++..-.++.+ +|+-...||.++ .+.++|...-. -++.-..+.+.
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg--------t~kIWdlR~~~----~qR~~~~~spV- 127 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG--------TVKIWDLRSLS----CQRNYQHNSPV- 127 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc--------eEEEEeccCcc----cchhccCCCCc-
Confidence 4678899887743222222233344343333 677777777765 67777777655 44443333321
Q ss_pred cccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368 242 SREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW 321 (390)
Q Consensus 242 ~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~ 321 (390)
-+++..-+.--++. |.....+.++|+.++....... +.....-.++.+..+|.+.+.....|..++|+.-+..
T Consensus 128 ----n~vvlhpnQteLis--~dqsg~irvWDl~~~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~ 200 (311)
T KOG0315|consen 128 ----NTVVLHPNQTELIS--GDQSGNIRVWDLGENSCTHELI-PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ 200 (311)
T ss_pred ----ceEEecCCcceEEe--ecCCCcEEEEEccCCccccccC-CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC
Confidence 33444433322222 1133457899999997766443 2233334455554788888888778889999887633
Q ss_pred e-EEcc---ccccccccee--EEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368 322 W-DEVI---ELAELKGAEK--ITAA-RGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 322 W-~~i~---~~p~~r~~~~--~~~~-~g~l~i~g~~~~~v~~~d~~~ 361 (390)
- +++. +++ .+..|. |... +++.....+.+..+.+|+..+
T Consensus 201 ~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 201 TASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred ccccceEhhhee-cccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 2 1222 222 122333 2222 555555445555555554433
No 91
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.29 E-value=3.8 Score=41.42 Aligned_cols=133 Identities=13% Similarity=0.150 Sum_probs=76.2
Q ss_pred eEEEEECCCCccccccEEcccCCCCCccccceEEEEEC--CEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCc
Q 016368 215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFK--GNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGP 292 (390)
Q Consensus 215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~--g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~ 292 (390)
++-++|.....+ .+... .|.+. .++++..+ |.+.+.|.+ ....+.+++.++++--.+-.+-..|- .
T Consensus 415 tVRAwDlkRYrN---fRTft-~P~p~----QfscvavD~sGelV~AG~~--d~F~IfvWS~qTGqllDiLsGHEgPV--s 482 (893)
T KOG0291|consen 415 TVRAWDLKRYRN---FRTFT-SPEPI----QFSCVAVDPSGELVCAGAQ--DSFEIFVWSVQTGQLLDILSGHEGPV--S 482 (893)
T ss_pred eEEeeeecccce---eeeec-CCCce----eeeEEEEcCCCCEEEeecc--ceEEEEEEEeecCeeeehhcCCCCcc--e
Confidence 667777765442 33222 23322 36666666 889988733 44566788888887555433111111 1
Q ss_pred eEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368 293 AASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 293 ~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~ 361 (390)
+++....+.+.+-|.++..+.+||.- .+|.++.+++.....-++... |.+|.|. .-+..+.+||+..
T Consensus 483 ~l~f~~~~~~LaS~SWDkTVRiW~if-~s~~~vEtl~i~sdvl~vsfrPdG~elaVa-TldgqItf~d~~~ 551 (893)
T KOG0291|consen 483 GLSFSPDGSLLASGSWDKTVRIWDIF-SSSGTVETLEIRSDVLAVSFRPDGKELAVA-TLDGQITFFDIKE 551 (893)
T ss_pred eeEEccccCeEEeccccceEEEEEee-ccCceeeeEeeccceeEEEEcCCCCeEEEE-EecceEEEEEhhh
Confidence 22222677788888899999999876 567777776655444444333 4455555 2233555555443
No 92
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=95.23 E-value=2.1 Score=38.16 Aligned_cols=107 Identities=14% Similarity=0.046 Sum_probs=65.9
Q ss_pred eEEEEEeecCCCCCCCCCcEEEeCCCCc--------e---ecCCCCCCCCcceEEEEE--CCE--EEEEeccCCCCCC--
Q 016368 148 NLVLIAATTPHFLPALASPLAFNPQSNT--------W---FFGPQLSIPRRWCAMGSV--GGV--VYVASGVGAHYRG-- 210 (390)
Q Consensus 148 ~l~~~gG~~~~~~~~~~~~~~~dp~t~~--------W---~~~~~~~~~r~~~~~~~~--~~~--lyv~GG~~~~~~~-- 210 (390)
..|++-|+........+.+++....++. . ..+...|.+|++|++.++ .|| .++|||..-....
T Consensus 39 ~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR 118 (337)
T PF03089_consen 39 EQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR 118 (337)
T ss_pred eeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence 4666666654433666777776654332 1 125678999999998877 343 7889997533111
Q ss_pred ---------CccCeEEEEECCCCccccccE--EcccCCCCCccccceEEEEECCEEEEEccc
Q 016368 211 ---------DVARSMKKWDLKSDREDWKWE--KKAQLKDGRFSREAVEAVGFKGNLCMVNLK 261 (390)
Q Consensus 211 ---------~~~~~~~~yd~~t~~~~~~W~--~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~ 261 (390)
+....++..|++-+. .+ .++.+..... .|.+..-++.+|++||.
T Consensus 119 TTenWNsVvDC~P~VfLiDleFGC----~tah~lpEl~dG~S---FHvslar~D~VYilGGH 173 (337)
T PF03089_consen 119 TTENWNSVVDCPPQVFLIDLEFGC----CTAHTLPELQDGQS---FHVSLARNDCVYILGGH 173 (337)
T ss_pred chhhcceeccCCCeEEEEeccccc----cccccchhhcCCeE---EEEEEecCceEEEEccE
Confidence 223456777887766 43 3444444433 35556679999999754
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.18 E-value=0.84 Score=43.06 Aligned_cols=145 Identities=10% Similarity=0.076 Sum_probs=78.4
Q ss_pred ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEEC--CEEEEEcccCCCCceeEEE
Q 016368 194 VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFK--GNLCMVNLKGNGAKDGAIY 271 (390)
Q Consensus 194 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~--g~lyv~gg~g~~~~~~~~y 271 (390)
.+++.++.||.+. -+.++|+.|.. .+..+..-+.. -.+.++.. +.+|..+ ....+.++
T Consensus 212 ~Dgkylatgg~d~--------~v~Iw~~~t~e------hv~~~~ghr~~--V~~L~fr~gt~~lys~s----~Drsvkvw 271 (479)
T KOG0299|consen 212 SDGKYLATGGRDR--------HVQIWDCDTLE------HVKVFKGHRGA--VSSLAFRKGTSELYSAS----ADRSVKVW 271 (479)
T ss_pred CCCcEEEecCCCc--------eEEEecCcccc------hhhcccccccc--eeeeeeecCccceeeee----cCCceEEE
Confidence 3889999999875 56788888765 22222221110 12223222 3466663 23334444
Q ss_pred eCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccccccccee-EEEECCEEEEEeeC
Q 016368 272 NVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEK-ITAARGRVCAVCEN 350 (390)
Q Consensus 272 d~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~-~~~~~g~l~i~g~~ 350 (390)
+.+.....+.- ....-.-.++-++-.++...+||.+..+..|+... .=+.+- .+ ...+.. ++.+++.-||.|++
T Consensus 272 ~~~~~s~vetl--yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlif-rg-~~~sidcv~~In~~HfvsGSd 346 (479)
T KOG0299|consen 272 SIDQLSYVETL--YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIF-RG-GEGSIDCVAFINDEHFVSGSD 346 (479)
T ss_pred ehhHhHHHHHH--hCCccceeeechhcccceEEeccccceeEEEeccc-cceeee-eC-CCCCeeeEEEecccceeeccC
Confidence 44333221110 11111111111124688889999999888887632 212221 11 122333 44569999999999
Q ss_pred CceEEEEEcCCCC
Q 016368 351 GERIMVVDVLASP 363 (390)
Q Consensus 351 ~~~v~~~d~~~~~ 363 (390)
+..|.+|++.++.
T Consensus 347 nG~IaLWs~~KKk 359 (479)
T KOG0299|consen 347 NGSIALWSLLKKK 359 (479)
T ss_pred CceEEEeeecccC
Confidence 9999999998763
No 94
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=95.13 E-value=0.6 Score=36.90 Aligned_cols=77 Identities=10% Similarity=0.104 Sum_probs=53.5
Q ss_pred EEECCEEEEEccc-CCCCceeEEEeCCCCCeEecCCC--CCCCCCCceEEEeeCCeEEEEeCCCC------cEEEE-ECC
Q 016368 249 VGFKGNLCMVNLK-GNGAKDGAIYNVELDKWKEMPEG--MHAGWNGPAASTMNEEELYVVNEGKG------RLSKY-DAD 318 (390)
Q Consensus 249 ~~~~g~lyv~gg~-g~~~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~~------~v~~y-d~~ 318 (390)
+.+||-+|..... ......+.+||..+++|+.++.+ .........++. ++|+|-++..... ++|+. |.+
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~-~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIE-YKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEE-eCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 4589999998533 22345567999999999988763 223344556666 9999999865332 67777 455
Q ss_pred CCceEEcc
Q 016368 319 HDWWDEVI 326 (390)
Q Consensus 319 ~~~W~~i~ 326 (390)
..+|.+..
T Consensus 81 k~~Wsk~~ 88 (129)
T PF08268_consen 81 KQEWSKKH 88 (129)
T ss_pred cceEEEEE
Confidence 67899765
No 95
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.05 E-value=3.6 Score=39.87 Aligned_cols=181 Identities=10% Similarity=0.051 Sum_probs=92.7
Q ss_pred ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368 99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFF 178 (390)
Q Consensus 99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~ 178 (390)
...++++|+.+++-..+...+. .... ....-++..+++..... ...+++++|..+++.+.
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g-~~~~---------------~~~SpDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~ 281 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEG-LNGA---------------PAWSPDGSKLAFVLSKD----GNPEIYVMDLASRQLSR 281 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCC-CcCC---------------eEECCCCCEEEEEEccC----CCceEEEEECCCCCeEE
Confidence 3468888988887777664443 1100 11222344333322211 12579999999998877
Q ss_pred CCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECC-EEE
Q 016368 179 GPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKG-NLC 256 (390)
Q Consensus 179 ~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g-~ly 256 (390)
+......-.... ..-++ +|++..... ....++.+|..++. ++.+...... . ......-+| .++
T Consensus 282 lt~~~~~~~~~~-~spDg~~i~f~s~~~------g~~~iy~~d~~~g~----~~~lt~~~~~-~---~~~~~Spdg~~i~ 346 (430)
T PRK00178 282 VTNHPAIDTEPF-WGKDGRTLYFTSDRG------GKPQIYKVNVNGGR----AERVTFVGNY-N---ARPRLSADGKTLV 346 (430)
T ss_pred cccCCCCcCCeE-ECCCCCEEEEEECCC------CCceEEEEECCCCC----EEEeecCCCC-c---cceEECCCCCEEE
Confidence 654321111111 12244 565543222 23478899998888 7776432211 1 111222344 444
Q ss_pred EEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC---CcEEEEECCC
Q 016368 257 MVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK---GRLSKYDADH 319 (390)
Q Consensus 257 v~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~---~~v~~yd~~~ 319 (390)
+.. ...+.....++|+.++..+.+.. ... ...+... .+|+.+++.... ..++..+...
T Consensus 347 ~~~-~~~~~~~l~~~dl~tg~~~~lt~-~~~-~~~p~~s--pdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 347 MVH-RQDGNFHVAAQDLQRGSVRILTD-TSL-DESPSVA--PNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEE-ccCCceEEEEEECCCCCEEEccC-CCC-CCCceEC--CCCCEEEEEEecCCceEEEEEECCC
Confidence 442 21223456789999988887765 211 1122222 677776665432 2566666643
No 96
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.04 E-value=2.9 Score=39.25 Aligned_cols=194 Identities=14% Similarity=0.151 Sum_probs=101.2
Q ss_pred EEEEeecCCCCCCCCCc--EEEeCCCCceecCCCCCCCCcceEEEE--ECCEEEEEeccCCCCCCCccCeEEEEECCC--
Q 016368 150 VLIAATTPHFLPALASP--LAFNPQSNTWFFGPQLSIPRRWCAMGS--VGGVVYVASGVGAHYRGDVARSMKKWDLKS-- 223 (390)
Q Consensus 150 ~~~gG~~~~~~~~~~~~--~~~dp~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t-- 223 (390)
+++|++... ....+ +.||..++++..+......-.-.-++. -+..||+...... ....+..|+...
T Consensus 2 ~~vgsy~~~---~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~-----~~g~v~~~~i~~~~ 73 (345)
T PF10282_consen 2 LYVGSYTNG---KGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSG-----DSGGVSSYRIDPDT 73 (345)
T ss_dssp EEEEECCSS---SSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSS-----TTTEEEEEEEETTT
T ss_pred EEEEcCCCC---CCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEcccc-----CCCCEEEEEECCCc
Confidence 466666431 12344 445668888877654321111111222 2567998865431 234666666655
Q ss_pred CccccccEEcccCCCCCccccceEEEEE--CC-EEEEEcccCCCCceeEEEeCCCC-CeEecC---------C-C-CCCC
Q 016368 224 DREDWKWEKKAQLKDGRFSREAVEAVGF--KG-NLCMVNLKGNGAKDGAIYNVELD-KWKEMP---------E-G-MHAG 288 (390)
Q Consensus 224 ~~~~~~W~~~~~~~~~~~~r~~~~~~~~--~g-~lyv~gg~g~~~~~~~~yd~~~~-~W~~~~---------~-~-~~~~ 288 (390)
.+ .+.+...+.... ..+.+.+ ++ .+|+. .++...+.+|++..+ +-.... + . ....
T Consensus 74 g~----L~~~~~~~~~g~---~p~~i~~~~~g~~l~va---ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~ 143 (345)
T PF10282_consen 74 GT----LTLLNSVPSGGS---SPCHIAVDPDGRFLYVA---NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEG 143 (345)
T ss_dssp TE----EEEEEEEEESSS---CEEEEEECTTSSEEEEE---ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSS
T ss_pred ce----eEEeeeeccCCC---CcEEEEEecCCCEEEEE---EccCCeEEEEEccCCcccceeeeecccCCCCCccccccc
Confidence 46 676665542111 1222333 44 45555 334566778888764 222211 0 0 1111
Q ss_pred CCCceEEEeeC-CeEEEEeCCCCcEEEEECCCCc--eEEcccc--cccccceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368 289 WNGPAASTMNE-EELYVVNEGKGRLSKYDADHDW--WDEVIEL--AELKGAEKITAA--RGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 289 ~~~~~~~~~~~-g~lyv~gg~~~~v~~yd~~~~~--W~~i~~~--p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~ 361 (390)
...|.+....+ ..+|+..-....|++|+..... ......+ +..-....++.. +..+|++.+..+.|.+|++..
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence 22334443234 4677777666688888887655 6554433 332233345554 457999987788888888873
No 97
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.96 E-value=2.9 Score=38.33 Aligned_cols=171 Identities=14% Similarity=0.192 Sum_probs=75.7
Q ss_pred CCCceecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCCCccCeEEEEECC--CCccccccEEcccCCCCCccccceEE
Q 016368 172 QSNTWFFGPQLSIPRRWCAMGSVG-GVVYVASGVGAHYRGDVARSMKKWDLK--SDREDWKWEKKAQLKDGRFSREAVEA 248 (390)
Q Consensus 172 ~t~~W~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~yd~~--t~~~~~~W~~~~~~~~~~~~r~~~~~ 248 (390)
....|+.+. ++.......+...+ +.-|++|-... +|-.. -.+ |+.+..-........-.++
T Consensus 4 ~~~~W~~v~-l~t~~~l~dV~F~d~~~G~~VG~~g~-----------il~T~DGG~t----W~~~~~~~~~~~~~~l~~I 67 (302)
T PF14870_consen 4 SGNSWQQVS-LPTDKPLLDVAFVDPNHGWAVGAYGT-----------ILKTTDGGKT----WQPVSLDLDNPFDYHLNSI 67 (302)
T ss_dssp SS--EEEEE--S-SS-EEEEEESSSS-EEEEETTTE-----------EEEESSTTSS-----EE-----S-----EEEEE
T ss_pred cCCCcEEee-cCCCCceEEEEEecCCEEEEEecCCE-----------EEEECCCCcc----ccccccCCCccceeeEEEE
Confidence 345787765 33333445555554 56788764421 23332 234 9987643222100002345
Q ss_pred EEECCEEEEEcccCCCCceeEEEeC--CCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcc
Q 016368 249 VGFKGNLCMVNLKGNGAKDGAIYNV--ELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVI 326 (390)
Q Consensus 249 ~~~~g~lyv~gg~g~~~~~~~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~ 326 (390)
...++..|++|- . ..++.+ .-.+|+.++...+.+.....+...-++.+.+++ ..+.+++=.-....|+.+.
T Consensus 68 ~f~~~~g~ivG~-----~-g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T~DgG~tW~~~~ 140 (302)
T PF14870_consen 68 SFDGNEGWIVGE-----P-GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRTTDGGKTWQAVV 140 (302)
T ss_dssp EEETTEEEEEEE-----T-TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEESSTTSSEEEEE
T ss_pred EecCCceEEEcC-----C-ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEeCCCCCCeeEcc
Confidence 556888999851 1 234444 345999986422223222333332456666665 4567777666678999876
Q ss_pred cccccccceeEEE-ECCEEEEEeeCCceEEEEEcCCCCCcceEe
Q 016368 327 ELAELKGAEKITA-ARGRVCAVCENGERIMVVDVLASPARAWLV 369 (390)
Q Consensus 327 ~~p~~r~~~~~~~-~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~ 369 (390)
.-... ....+.. -+|++++++..++-+..+|.-.. .|+.
T Consensus 141 ~~~~g-s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~ 180 (302)
T PF14870_consen 141 SETSG-SINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQP 180 (302)
T ss_dssp -S-----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EE
T ss_pred cCCcc-eeEeEEECCCCcEEEEECcccEEEEecCCCc---cceE
Confidence 43221 1122333 36777777666666667786555 6873
No 98
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.89 E-value=0.012 Score=52.60 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=34.6
Q ss_pred CCCCcHHHHHHHHhcCC--------chhhHhhhHhHHHhhcCCCCCC
Q 016368 34 LPGLPNHLADRCLSSLP--------PALLFSVCHSWRRLLYSPYFPP 72 (390)
Q Consensus 34 ~~~LP~dl~~~iL~rLP--------l~~~r~Vck~W~~l~~s~~f~~ 72 (390)
|..|||||+.+||.++= +.++.+|||.|+..+.+|+|.+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR 153 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWR 153 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHH
Confidence 45799999999998864 7899999999999999999765
No 99
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=94.83 E-value=3.5 Score=38.67 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=43.3
Q ss_pred eCCeEEEEe-CCC--------CcEEEEECCCCceEEcccccccccceeEEEE-CC--EEEEEeeCCceEEEEEcCCC
Q 016368 298 NEEELYVVN-EGK--------GRLSKYDADHDWWDEVIELAELKGAEKITAA-RG--RVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 298 ~~g~lyv~g-g~~--------~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g--~l~i~g~~~~~v~~~d~~~~ 362 (390)
-++++||.. +.. +.++++|.+ +++.+..++..+..+++++. ++ .||+..+..++|.++|+.+.
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~--t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAK--TGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECC--CCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 468899842 211 489999976 46777777666666677665 44 45655455678999998876
No 100
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.78 E-value=4.4 Score=39.57 Aligned_cols=177 Identities=10% Similarity=0.002 Sum_probs=91.0
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS 242 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~ 242 (390)
..++++|..+++-+.+...+....... ..-+| +|++....+ ....++++|..++. .+.+..-.....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~-wSPDG~~La~~~~~~------g~~~Iy~~dl~tg~----~~~lt~~~~~~~- 309 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPR-FSPDGKKLALVLSKD------GQPEIYVVDIATKA----LTRITRHRAIDT- 309 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCee-ECCCCCEEEEEEeCC------CCeEEEEEECCCCC----eEECccCCCCcc-
Confidence 579999999887666654432111111 11244 465554332 23478999999988 777654321111
Q ss_pred ccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC-eEEEEeCCCC--cEEEEECC
Q 016368 243 REAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKG--RLSKYDAD 318 (390)
Q Consensus 243 r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~--~v~~yd~~ 318 (390)
.....-+|+ +++.. ...+....+.+|+.+++++.+.. ........... .+| .|++.....+ .++++|..
T Consensus 310 ---~p~wSpDG~~I~f~s-~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 310 ---EPSWHPDGKSLIFTS-ERGGKPQIYRVNLASGKVSRLTF-EGEQNLGGSIT--PDGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred ---ceEECCCCCEEEEEE-CCCCCceEEEEECCCCCEEEEec-CCCCCcCeeEC--CCCCEEEEEEecCCceEEEEEECC
Confidence 112223554 44442 11233567788998888887743 11111122222 455 4444443333 78999999
Q ss_pred CCceEEcccccccccceeEEEECCE-EEEEeeC--CceEEEEEcCC
Q 016368 319 HDWWDEVIELAELKGAEKITAARGR-VCAVCEN--GERIMVVDVLA 361 (390)
Q Consensus 319 ~~~W~~i~~~p~~r~~~~~~~~~g~-l~i~g~~--~~~v~~~d~~~ 361 (390)
+...+.+..-.... ... ..-+|+ |++.... ...++++|...
T Consensus 383 ~g~~~~lt~~~~d~-~ps-~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 383 TGAMQVLTSTRLDE-SPS-VAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred CCCeEEccCCCCCC-Cce-ECCCCCEEEEEEecCCceEEEEEECCC
Confidence 88877765322111 112 223444 4433222 22477777643
No 101
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.69 E-value=4.4 Score=42.78 Aligned_cols=173 Identities=8% Similarity=0.024 Sum_probs=89.2
Q ss_pred CCcEEEeCCCCceecCCCCCCC-CcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIP-RRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR 240 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~-r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~ 240 (390)
..+.+||..+++-.. .+... ..-.+++.. ++.+++.||.+. .+.+||..+... ...+.. ...
T Consensus 555 g~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg--------~v~iWd~~~~~~---~~~~~~-~~~- 619 (793)
T PLN00181 555 GVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDG--------SVKLWSINQGVS---IGTIKT-KAN- 619 (793)
T ss_pred CeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCC--------EEEEEECCCCcE---EEEEec-CCC-
Confidence 467788887664322 11111 111223332 466777777664 688899876541 222211 111
Q ss_pred ccccceEEEE--ECCEEEEEcccCCCCceeEEEeCCCCC--eEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368 241 FSREAVEAVG--FKGNLCMVNLKGNGAKDGAIYNVELDK--WKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYD 316 (390)
Q Consensus 241 ~~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd 316 (390)
..++.. .++.+++.|+ ....+.+||..+.. ...+.. .......+.. .++..++.++.++.+..||
T Consensus 620 ----v~~v~~~~~~g~~latgs---~dg~I~iwD~~~~~~~~~~~~~---h~~~V~~v~f-~~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 620 ----ICCVQFPSESGRSLAFGS---ADHKVYYYDLRNPKLPLCTMIG---HSKTVSYVRF-VDSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred ----eEEEEEeCCCCCEEEEEe---CCCeEEEEECCCCCccceEecC---CCCCEEEEEE-eCCCEEEEEECCCEEEEEe
Confidence 122222 2466666642 23456789986542 111111 1111122333 4777788888889999999
Q ss_pred CCCC----ceEEcccccccccceeEE--EECCEEEEEeeCCceEEEEEcCCC
Q 016368 317 ADHD----WWDEVIELAELKGAEKIT--AARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 317 ~~~~----~W~~i~~~p~~r~~~~~~--~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
.... .|..+..+........++ ...+.+++.|+.++.+.+||....
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 8643 244443333222211222 225666677677788999987543
No 102
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.68 E-value=4.5 Score=39.19 Aligned_cols=177 Identities=12% Similarity=0.035 Sum_probs=93.3
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEE-ECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGS-VGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF 241 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~-~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~ 241 (390)
..++++|+.+++-+.+...+..- ..... -+| +|++....+ ....++++|..++. .+.+..-.....
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~--~~~~~SpDG~~la~~~~~~------g~~~Iy~~d~~~~~----~~~lt~~~~~~~ 290 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLN--GAPAWSPDGSKLAFVLSKD------GNPEIYVMDLASRQ----LSRVTNHPAIDT 290 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCc--CCeEECCCCCEEEEEEccC------CCceEEEEECCCCC----eEEcccCCCCcC
Confidence 47999999998877765443211 11122 244 455433222 12578999999988 777654322111
Q ss_pred cccceEEEEECC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC-eEEEEeCCCC--cEEEEEC
Q 016368 242 SREAVEAVGFKG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKG--RLSKYDA 317 (390)
Q Consensus 242 ~r~~~~~~~~~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~--~v~~yd~ 317 (390)
.....-+| ++++.. ...+...+..+|..+++++.+.. . ...........+| .|++....++ .++.+|.
T Consensus 291 ----~~~~spDg~~i~f~s-~~~g~~~iy~~d~~~g~~~~lt~-~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl 362 (430)
T PRK00178 291 ----EPFWGKDGRTLYFTS-DRGGKPQIYKVNVNGGRAERVTF-V--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDL 362 (430)
T ss_pred ----CeEECCCCCEEEEEE-CCCCCceEEEEECCCCCEEEeec-C--CCCccceEECCCCCEEEEEEccCCceEEEEEEC
Confidence 11222344 455542 11123456788988888877653 1 1111122221344 4544443333 6899999
Q ss_pred CCCceEEcccccccccceeEEEECCEEEEEeeC---CceEEEEEcCCC
Q 016368 318 DHDWWDEVIELAELKGAEKITAARGRVCAVCEN---GERIMVVDVLAS 362 (390)
Q Consensus 318 ~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~---~~~v~~~d~~~~ 362 (390)
.+...+.+..... .......-+|+.+++... ...+++.++...
T Consensus 363 ~tg~~~~lt~~~~--~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 363 QRGSVRILTDTSL--DESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCCCEEEccCCCC--CCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 9988877764321 111122335565555432 235777777544
No 103
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.45 E-value=2.8 Score=40.28 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=55.4
Q ss_pred EEEeCCCC----CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CC
Q 016368 269 AIYNVELD----KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RG 342 (390)
Q Consensus 269 ~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g 342 (390)
..||.... .|.+.-. .+..+.+++- .+..|++--|.+.++..||.....-+..-....+ .+.+.+ +|
T Consensus 190 tlwDv~g~sp~~~~~~~Hs---AP~~gicfsp-sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P---lstvaf~~~G 262 (673)
T KOG4378|consen 190 TLWDVQGMSPIFHASEAHS---APCRGICFSP-SNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP---LSTVAFSECG 262 (673)
T ss_pred EEEeccCCCcccchhhhcc---CCcCcceecC-CccceEEEecccceEEEeecccccccceeeecCC---cceeeecCCc
Confidence 35555433 3444433 3444555554 7899999889999999999885443322111111 223333 67
Q ss_pred EEEEEeeCCceEEEEEcCCCCC
Q 016368 343 RVCAVCENGERIMVVDVLASPA 364 (390)
Q Consensus 343 ~l~i~g~~~~~v~~~d~~~~~~ 364 (390)
.+.++|...+.++.||+...+.
T Consensus 263 ~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 263 TYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred eEEEeecCCceEEEEecccCCC
Confidence 7777877778999999988743
No 104
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.42 E-value=1.1 Score=40.49 Aligned_cols=118 Identities=18% Similarity=0.321 Sum_probs=68.3
Q ss_pred EEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEccc---CCCCceeEEEeCC
Q 016368 199 YVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLK---GNGAKDGAIYNVE 274 (390)
Q Consensus 199 yv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~---g~~~~~~~~yd~~ 274 (390)
||-|-+... ..-....+-.||+.+.+ |..+..--.... .++... ++++|+.|-- +........||.+
T Consensus 2 ~VGG~F~~a-GsL~C~~lC~yd~~~~q----W~~~g~~i~G~V----~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~ 72 (281)
T PF12768_consen 2 YVGGSFTSA-GSLPCPGLCLYDTDNSQ----WSSPGNGISGTV----TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFK 72 (281)
T ss_pred EEeeecCCC-CCcCCCEEEEEECCCCE----eecCCCCceEEE----EEEEEecCCEEEEEEeeEECCCCceeEEEEecC
Confidence 444444432 12246789999999999 998876532211 334434 6778877521 1123445689999
Q ss_pred CCCeEecCCCCCCCCCCc--eEEE--eeCCeEEEEeCC-CC--cEEEEECCCCceEEccc
Q 016368 275 LDKWKEMPEGMHAGWNGP--AAST--MNEEELYVVNEG-KG--RLSKYDADHDWWDEVIE 327 (390)
Q Consensus 275 ~~~W~~~~~~~~~~~~~~--~~~~--~~~g~lyv~gg~-~~--~v~~yd~~~~~W~~i~~ 327 (390)
+.+|+.++........++ ...+ .-...+++.|.. .+ -+.+|| ..+|..+..
T Consensus 73 ~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 73 NQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred CCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence 999998876321122222 2221 123456666653 22 567775 558999875
No 105
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.35 E-value=5.5 Score=38.74 Aligned_cols=189 Identities=10% Similarity=0.033 Sum_probs=93.8
Q ss_pred ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368 99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFF 178 (390)
Q Consensus 99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~ 178 (390)
...++.+|+.+++...+...+. .... ....-++..+++..... ...+++++|..+++.+.
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g-~~~~---------------~~~SPDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPG-MTFA---------------PRFSPDGRKVVMSLSQG----GNTDIYTMDLRSGTTTR 284 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCC-cccC---------------cEECCCCCEEEEEEecC----CCceEEEEECCCCceEE
Confidence 3568889998888777765443 1111 22223444443332211 13579999999888776
Q ss_pred CCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEE
Q 016368 179 GPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCM 257 (390)
Q Consensus 179 ~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv 257 (390)
+...+..-. .....-++ +|++..... ....++++|..+.. .+.+...... . ......-+|+..+
T Consensus 285 Lt~~~~~~~-~~~~spDG~~i~f~s~~~------g~~~Iy~~d~~g~~----~~~lt~~~~~-~---~~~~~SpdG~~ia 349 (435)
T PRK05137 285 LTDSPAIDT-SPSYSPDGSQIVFESDRS------GSPQLYVMNADGSN----PRRISFGGGR-Y---STPVWSPRGDLIA 349 (435)
T ss_pred ccCCCCccC-ceeEcCCCCEEEEEECCC------CCCeEEEEECCCCC----eEEeecCCCc-c---cCeEECCCCCEEE
Confidence 654332111 11112244 454433221 23478899988777 6665432111 1 1112223554333
Q ss_pred EcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCC-C-----CcEEEEECCCCceEEcc
Q 016368 258 VNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEG-K-----GRLSKYDADHDWWDEVI 326 (390)
Q Consensus 258 ~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~-~-----~~v~~yd~~~~~W~~i~ 326 (390)
+.....+...+.++|+.++..+.+.... ....+... .||+..++... . ..++.+|.....-+.+.
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~~~lt~~~--~~~~p~~s--pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGERILTSGF--LVEGPTWA--PNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEEcCCCceEEEEEECCCCceEeccCCC--CCCCCeEC--CCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 3222223345678898776666554411 11222222 56665544321 1 36788887765444443
No 106
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=94.32 E-value=0.4 Score=37.89 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=50.9
Q ss_pred eCCeEEEEeCC----CCcEEEEECCCCceEEcccc---cccccceeEEEECCEEEEEeeCC------ceEEEEEcCCCCC
Q 016368 298 NEEELYVVNEG----KGRLSKYDADHDWWDEVIEL---AELKGAEKITAARGRVCAVCENG------ERIMVVDVLASPA 364 (390)
Q Consensus 298 ~~g~lyv~gg~----~~~v~~yd~~~~~W~~i~~~---p~~r~~~~~~~~~g~l~i~g~~~------~~v~~~d~~~~~~ 364 (390)
+||-||.+... ...|..||.++++|+.+... ........++.++|+|.++.... -++|+++-..+
T Consensus 4 inGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k-- 81 (129)
T PF08268_consen 4 INGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK-- 81 (129)
T ss_pred ECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc--
Confidence 79999988765 34899999999999988742 12344567888999999986331 47888864433
Q ss_pred cceE
Q 016368 365 RAWL 368 (390)
Q Consensus 365 ~~W~ 368 (390)
++|.
T Consensus 82 ~~Ws 85 (129)
T PF08268_consen 82 QEWS 85 (129)
T ss_pred ceEE
Confidence 4787
No 107
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=94.29 E-value=1.1 Score=37.01 Aligned_cols=81 Identities=12% Similarity=0.200 Sum_probs=49.4
Q ss_pred EEECCEEEEEcccCCCCc--eeEEEeCCCCCe-EecCCCCCCC--CCCceEEEeeCCeEEEEeCCC----CcEEEEEC--
Q 016368 249 VGFKGNLCMVNLKGNGAK--DGAIYNVELDKW-KEMPEGMHAG--WNGPAASTMNEEELYVVNEGK----GRLSKYDA-- 317 (390)
Q Consensus 249 ~~~~g~lyv~gg~g~~~~--~~~~yd~~~~~W-~~~~~~~~~~--~~~~~~~~~~~g~lyv~gg~~----~~v~~yd~-- 317 (390)
+.++|.+|+++....... .+..||+.++++ +.++.+.... .....+.+..+++|-++-... -+||+.+.
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~~ 81 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKYG 81 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeeec
Confidence 568999999964432222 477999999999 6665422122 112233222478888885322 26777662
Q ss_pred -CCCceEEccccc
Q 016368 318 -DHDWWDEVIELA 329 (390)
Q Consensus 318 -~~~~W~~i~~~p 329 (390)
...+|+++-.++
T Consensus 82 ~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 82 YGKESWTKLFTID 94 (164)
T ss_pred cCcceEEEEEEEe
Confidence 367899986544
No 108
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.25 E-value=4.7 Score=39.92 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=65.6
Q ss_pred EEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC-cc-ccceEEEEEC-CEEEEEcccCCCCc
Q 016368 190 AMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR-FS-REAVEAVGFK-GNLCMVNLKGNGAK 266 (390)
Q Consensus 190 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~-~~-r~~~~~~~~~-g~lyv~gg~g~~~~ 266 (390)
+-++.+++||+.... ..+..+|..|.+ ..|+.-...+... .. -.....+..+ +++|+-. ...
T Consensus 56 sPvv~~g~vy~~~~~---------g~l~AlD~~tG~--~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~----~~g 120 (488)
T cd00216 56 TPLVVDGDMYFTTSH---------SALFALDAATGK--VLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT----FDG 120 (488)
T ss_pred CCEEECCEEEEeCCC---------CcEEEEECCCCh--hhceeCCCCCccccccccccCCcEEccCCeEEEec----CCC
Confidence 345679999986432 367889998866 3387643222000 00 0012234456 8888763 334
Q ss_pred eeEEEeCCCC--CeEecCCCCC-CCC-CCceEEEeeCCeEEEEe--------CCCCcEEEEECCCCc--eEE
Q 016368 267 DGAIYNVELD--KWKEMPEGMH-AGW-NGPAASTMNEEELYVVN--------EGKGRLSKYDADHDW--WDE 324 (390)
Q Consensus 267 ~~~~yd~~~~--~W~~~~~~~~-~~~-~~~~~~~~~~g~lyv~g--------g~~~~v~~yd~~~~~--W~~ 324 (390)
.+..+|.+++ .|+.-..... ... ...+.++ .++.+|+-. +.++.++.+|.++.+ |+.
T Consensus 121 ~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v-~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 121 RLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI-VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred eEEEEECCCCCEeeeecCCCCcCcceEecCCCEE-ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence 5678898765 6886543110 011 1122233 566666532 234688999998754 875
No 109
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=94.19 E-value=2.4 Score=37.07 Aligned_cols=139 Identities=10% Similarity=0.134 Sum_probs=77.8
Q ss_pred cCeEEEEECCCCccccccEEccc--CCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCC-CCCCCC
Q 016368 213 ARSMKKWDLKSDREDWKWEKKAQ--LKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPE-GMHAGW 289 (390)
Q Consensus 213 ~~~~~~yd~~t~~~~~~W~~~~~--~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~-~~~~~~ 289 (390)
..++..+|..|++ ++.. ++.+.- ..=+..+|++..+. .+..+.-+|..+ +..+.. .+|-.-
T Consensus 164 d~tVRLWD~rTgt------~v~sL~~~s~Vt----SlEvs~dG~ilTia----~gssV~Fwdaks--f~~lKs~k~P~nV 227 (334)
T KOG0278|consen 164 DKTVRLWDHRTGT------EVQSLEFNSPVT----SLEVSQDGRILTIA----YGSSVKFWDAKS--FGLLKSYKMPCNV 227 (334)
T ss_pred CCceEEEEeccCc------EEEEEecCCCCc----ceeeccCCCEEEEe----cCceeEEecccc--ccceeeccCcccc
Confidence 4578888988887 3332 222221 11223577777663 344455555443 222222 133333
Q ss_pred CCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCCCC-cc
Q 016368 290 NGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLASPA-RA 366 (390)
Q Consensus 290 ~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~~~-~~ 366 (390)
..+++- .+..+||.||.+..+++||..|+.=.... .....+..-++.+ +|.+|..|+.+..+.+|.+-.... +.
T Consensus 228 ~SASL~--P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~~ 304 (334)
T KOG0278|consen 228 ESASLH--PKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYGL 304 (334)
T ss_pred cccccc--CCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchhh
Confidence 333333 67799999999999999999987533321 1222222233333 899999998777777665543322 26
Q ss_pred eEec
Q 016368 367 WLVD 370 (390)
Q Consensus 367 W~~~ 370 (390)
|...
T Consensus 305 ~~~~ 308 (334)
T KOG0278|consen 305 WKCV 308 (334)
T ss_pred cccc
Confidence 7643
No 110
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.12 E-value=6.1 Score=38.40 Aligned_cols=182 Identities=11% Similarity=0.059 Sum_probs=92.1
Q ss_pred ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368 99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFF 178 (390)
Q Consensus 99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~ 178 (390)
...++.+|..+++-..+...+. .... ....-++..+++..... ...+++++|+.+++.+.
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g-~~~~---------------~~~SpDG~~l~~~~s~~----g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRG-INGA---------------PSFSPDGRRLALTLSRD----GNPEIYVMDLGSRQLTR 286 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCC-CccC---------------ceECCCCCEEEEEEeCC----CCceEEEEECCCCCeEE
Confidence 3457888888877766654443 1110 12223444343332211 12579999999887766
Q ss_pred CCCCCCCCcceEEEEECCE-EEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECC-EEE
Q 016368 179 GPQLSIPRRWCAMGSVGGV-VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKG-NLC 256 (390)
Q Consensus 179 ~~~~~~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g-~ly 256 (390)
+......-... ...-+++ |++..... ....++++|..++. .+.+..-.. .. ......-+| .++
T Consensus 287 lt~~~~~~~~~-~~spDG~~l~f~sd~~------g~~~iy~~dl~~g~----~~~lt~~g~--~~--~~~~~SpDG~~Ia 351 (433)
T PRK04922 287 LTNHFGIDTEP-TWAPDGKSIYFTSDRG------GRPQIYRVAASGGS----AERLTFQGN--YN--ARASVSPDGKKIA 351 (433)
T ss_pred CccCCCCccce-EECCCCCEEEEEECCC------CCceEEEEECCCCC----eEEeecCCC--Cc--cCEEECCCCCEEE
Confidence 54332111111 1122444 54443222 12478888988887 776643211 10 111222344 444
Q ss_pred EEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCC---CCcEEEEECCCC
Q 016368 257 MVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEG---KGRLSKYDADHD 320 (390)
Q Consensus 257 v~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~---~~~v~~yd~~~~ 320 (390)
+... ..+...+.++|+.++..+.+... . ....+... .+|+.+++... ...++.+|....
T Consensus 352 ~~~~-~~~~~~I~v~d~~~g~~~~Lt~~-~-~~~~p~~s--pdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 352 MVHG-SGGQYRIAVMDLSTGSVRTLTPG-S-LDESPSFA--PNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEEC-CCCceeEEEEECCCCCeEECCCC-C-CCCCceEC--CCCCEEEEEEecCCceEEEEEECCCC
Confidence 4421 22234677899988888776542 1 11222222 67776555442 226788877643
No 111
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.05 E-value=6.3 Score=38.31 Aligned_cols=177 Identities=12% Similarity=0.067 Sum_probs=90.5
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS 242 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~ 242 (390)
..++++|+.+++.+.+...+........ .-+| +|++....+ ....++++|..++. -+.+...+...
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~-SPDG~~la~~~~~~------g~~~Iy~~d~~~~~----~~~Lt~~~~~~-- 292 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRF-SPDGRKVVMSLSQG------GNTDIYTMDLRSGT----TTRLTDSPAID-- 292 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEE-CCCCCEEEEEEecC------CCceEEEEECCCCc----eEEccCCCCcc--
Confidence 5899999999988776654432221111 2244 454443322 23578889998887 66665433211
Q ss_pred ccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe-EEEEeCCC--CcEEEEECC
Q 016368 243 REAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE-LYVVNEGK--GRLSKYDAD 318 (390)
Q Consensus 243 r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~-lyv~gg~~--~~v~~yd~~ 318 (390)
......-+|+ +++.. ...+...++++|..++..+.+.. . .......... .+|+ |++..... ..++.+|..
T Consensus 293 --~~~~~spDG~~i~f~s-~~~g~~~Iy~~d~~g~~~~~lt~-~-~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 293 --TSPSYSPDGSQIVFES-DRSGSPQLYVMNADGSNPRRISF-G-GGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred --CceeEcCCCCEEEEEE-CCCCCCeEEEEECCCCCeEEeec-C-CCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECC
Confidence 1122223554 44332 12233467788888777666654 1 1112122222 4554 44443222 378999987
Q ss_pred CCceEEcccccccccceeEE-EECCE-EEEEeeC-C----ceEEEEEcCCC
Q 016368 319 HDWWDEVIELAELKGAEKIT-AARGR-VCAVCEN-G----ERIMVVDVLAS 362 (390)
Q Consensus 319 ~~~W~~i~~~p~~r~~~~~~-~~~g~-l~i~g~~-~----~~v~~~d~~~~ 362 (390)
+.....+..-. ...... .-+|+ |+..... + ..++++|+.+.
T Consensus 367 ~~~~~~lt~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 367 GSGERILTSGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCceEeccCCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 76665554211 111222 22444 4444321 1 36888888665
No 112
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.04 E-value=6 Score=38.01 Aligned_cols=148 Identities=9% Similarity=-0.005 Sum_probs=77.3
Q ss_pred eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCe-EEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368 100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNN-LVLIAATTPHFLPALASPLAFNPQSNTWFF 178 (390)
Q Consensus 100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~ 178 (390)
..++++|..+++-..+..... .... ....-+++ +++.... ....+++.+|..++..+.
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~-~~~~---------------~~~spDg~~l~~~~~~-----~~~~~i~~~d~~~~~~~~ 272 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG-MNGA---------------PAFSPDGSKLAVSLSK-----DGNPDIYVMDLDGKQLTR 272 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC-Cccc---------------eEECCCCCEEEEEECC-----CCCccEEEEECCCCCEEE
Confidence 468888888876665544332 1110 11222343 4443322 122579999999887776
Q ss_pred CCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEE
Q 016368 179 GPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCM 257 (390)
Q Consensus 179 ~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv 257 (390)
+............ .-++ +|++..... ....++++|..+.. ++.+........ .....-+|+.++
T Consensus 273 l~~~~~~~~~~~~-s~dg~~l~~~s~~~------g~~~iy~~d~~~~~----~~~l~~~~~~~~----~~~~spdg~~i~ 337 (417)
T TIGR02800 273 LTNGPGIDTEPSW-SPDGKSIAFTSDRG------GSPQIYMMDADGGE----VRRLTFRGGYNA----SPSWSPDGDLIA 337 (417)
T ss_pred CCCCCCCCCCEEE-CCCCCEEEEEECCC------CCceEEEEECCCCC----EEEeecCCCCcc----CeEECCCCCEEE
Confidence 6543211111111 1244 455443322 12478899998887 776653221111 112234666555
Q ss_pred EcccCCCCceeEEEeCCCCCeEecCC
Q 016368 258 VNLKGNGAKDGAIYNVELDKWKEMPE 283 (390)
Q Consensus 258 ~gg~g~~~~~~~~yd~~~~~W~~~~~ 283 (390)
+...+.+...+.++|+.++.++.+..
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred EEEccCCceEEEEEeCCCCCeEEccC
Confidence 54332234467789998877776654
No 113
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.02 E-value=11 Score=41.10 Aligned_cols=184 Identities=11% Similarity=0.044 Sum_probs=97.7
Q ss_pred CCCcEEEeCCCCceecCCCC----------CCCC--cceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCcccc
Q 016368 163 LASPLAFNPQSNTWFFGPQL----------SIPR--RWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDW 228 (390)
Q Consensus 163 ~~~~~~~dp~t~~W~~~~~~----------~~~r--~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~ 228 (390)
.+.+.++|+..+.-..+... ...+ .-+++++. ++.|||.-..+ +.+.++|+.++.
T Consensus 589 n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n--------~~Ir~id~~~~~--- 657 (1057)
T PLN02919 589 HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN--------HALREIDFVNET--- 657 (1057)
T ss_pred CCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC--------ceEEEEecCCCE---
Confidence 36788899865532222221 0111 11344443 46789874432 367888887765
Q ss_pred ccEEcccCCC-------------CCccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCC---------
Q 016368 229 KWEKKAQLKD-------------GRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEG--------- 284 (390)
Q Consensus 229 ~W~~~~~~~~-------------~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~--------- 284 (390)
=+.+..-.. .... ....+++. ++.+||. ..+.+.+.+||+.++........
T Consensus 658 -V~tlag~G~~g~~~~gg~~~~~~~ln-~P~gVa~dp~~g~LyVa---d~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~ 732 (1057)
T PLN02919 658 -VRTLAGNGTKGSDYQGGKKGTSQVLN-SPWDVCFEPVNEKVYIA---MAGQHQIWEYNISDGVTRVFSGDGYERNLNGS 732 (1057)
T ss_pred -EEEEeccCcccCCCCCChhhhHhhcC-CCeEEEEecCCCeEEEE---ECCCCeEEEEECCCCeEEEEecCCccccCCCC
Confidence 333321100 0000 01334443 6789988 23456678888877655432210
Q ss_pred CC---CCCCCceEEEeeCC-eEEEEeCCCCcEEEEECCCCceEEccc----cc----------------ccccceeEEEE
Q 016368 285 MH---AGWNGPAASTMNEE-ELYVVNEGKGRLSKYDADHDWWDEVIE----LA----------------ELKGAEKITAA 340 (390)
Q Consensus 285 ~~---~~~~~~~~~~~~~g-~lyv~gg~~~~v~~yd~~~~~W~~i~~----~p----------------~~r~~~~~~~~ 340 (390)
.. ....-.++++..+| .||+....++.|.+||++++.-..+.. .+ ......+++..
T Consensus 733 ~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd 812 (1057)
T PLN02919 733 SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA 812 (1057)
T ss_pred ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence 00 00111223332344 599999888899999998765332210 00 01122344443
Q ss_pred -CCEEEEEeeCCceEEEEEcCCC
Q 016368 341 -RGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 341 -~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
+|.|||.-..++.|.++|+.+.
T Consensus 813 ~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 813 KDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred CCCcEEEEECCCCEEEEEECCCC
Confidence 6789998777789999998764
No 114
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.97 E-value=3.8 Score=35.59 Aligned_cols=212 Identities=8% Similarity=0.039 Sum_probs=114.9
Q ss_pred EEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceec-CCCCCCCCcceEEEEEC--CEEEEEeccCCCCCCCccCeEEE
Q 016368 142 SLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFF-GPQLSIPRRWCAMGSVG--GVVYVASGVGAHYRGDVARSMKK 218 (390)
Q Consensus 142 ~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~-~~~~~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~ 218 (390)
....++.-++.+|+. ..+.+||..|++--+ .... -..-..+.++ ..+.+-|+++. ++.+
T Consensus 66 ~~s~Dnskf~s~GgD-------k~v~vwDV~TGkv~Rr~rgH---~aqVNtV~fNeesSVv~SgsfD~--------s~r~ 127 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGD-------KAVQVWDVNTGKVDRRFRGH---LAQVNTVRFNEESSVVASGSFDS--------SVRL 127 (307)
T ss_pred cccccccccccCCCC-------ceEEEEEcccCeeeeecccc---cceeeEEEecCcceEEEeccccc--------eeEE
Confidence 344556667776653 468899999885422 1100 0111223333 34666666654 7889
Q ss_pred EECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee
Q 016368 219 WDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN 298 (390)
Q Consensus 219 yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 298 (390)
||-.++. -+.+.-+..... ....+.+.+...+-| .-....-.||...++-.. .-+..+....+.. .
T Consensus 128 wDCRS~s----~ePiQildea~D---~V~Si~v~~heIvaG---S~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s--~ 193 (307)
T KOG0316|consen 128 WDCRSRS----FEPIQILDEAKD---GVSSIDVAEHEIVAG---SVDGTVRTYDIRKGTLSS--DYFGHPITSVSFS--K 193 (307)
T ss_pred EEcccCC----CCccchhhhhcC---ceeEEEecccEEEee---ccCCcEEEEEeecceeeh--hhcCCcceeEEec--C
Confidence 9999998 788877776665 466666777766663 112234579887665332 1122222222222 5
Q ss_pred CCeEEEEeCCCCcEEEEECCCCceEEcc-cccccccceeEEEEC-CEEEEEeeCCceEEEEEcCCCCCcceE-ecCCCCe
Q 016368 299 EEELYVVNEGKGRLSKYDADHDWWDEVI-ELAELKGAEKITAAR-GRVCAVCENGERIMVVDVLASPARAWL-VDPPRGF 375 (390)
Q Consensus 299 ~g~lyv~gg~~~~v~~yd~~~~~W~~i~-~~p~~r~~~~~~~~~-g~l~i~g~~~~~v~~~d~~~~~~~~W~-~~~p~g~ 375 (390)
++.-.+++.-++.+...|-+|.+--+.- .....-.-.-++..+ +...+-|..+..|++||+.... +=. ...+.+.
T Consensus 194 d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~--~~sk~~~~~~v 271 (307)
T KOG0316|consen 194 DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET--QISKLSVVSTV 271 (307)
T ss_pred CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce--eeeeeccCCce
Confidence 5666666666667777777765432211 000011111233443 3344444556789999998762 112 3455555
Q ss_pred eEEEEEeecccc
Q 016368 376 QVVAVHVLPRMC 387 (390)
Q Consensus 376 ~~~~~~~~~~~~ 387 (390)
.+..+++-|+|.
T Consensus 272 ~v~dl~~hp~~~ 283 (307)
T KOG0316|consen 272 IVTDLSCHPTMD 283 (307)
T ss_pred eEEeeecccCcc
Confidence 556666667664
No 115
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.94 E-value=1.2 Score=41.12 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=37.8
Q ss_pred eCCeEEEEeC--CCC-------cEEEEECCCCceEEcccccccccceeEEEE-CC--EEEEEeeCCceEEEEEcCCC
Q 016368 298 NEEELYVVNE--GKG-------RLSKYDADHDWWDEVIELAELKGAEKITAA-RG--RVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 298 ~~g~lyv~gg--~~~-------~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g--~l~i~g~~~~~v~~~d~~~~ 362 (390)
..++|||+-- ..+ .||+||+++.+= +..++.....-++.+. ++ .||.+...+..+.++|..+.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr--v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR--VARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE--EEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeE--EEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 4689998742 111 899999998753 3333322222244444 33 46656455678999999886
No 116
>PRK13684 Ycf48-like protein; Provisional
Probab=93.93 E-value=5.5 Score=37.24 Aligned_cols=125 Identities=17% Similarity=0.300 Sum_probs=65.6
Q ss_pred cEEccc---CCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCC--CCCeEecCCCCCCCCCCceEEEeeCCeEE
Q 016368 230 WEKKAQ---LKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVE--LDKWKEMPEGMHAGWNGPAASTMNEEELY 303 (390)
Q Consensus 230 W~~~~~---~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~~g~ly 303 (390)
|+++.. .+... ..+... ++.+|+.|. .+.+|-.. -++|+.+.... .. ....+.. ..+..+
T Consensus 121 W~~~~~~~~~~~~~-----~~i~~~~~~~~~~~g~------~G~i~~S~DgG~tW~~~~~~~-~g-~~~~i~~-~~~g~~ 186 (334)
T PRK13684 121 WTRIPLSEKLPGSP-----YLITALGPGTAEMATN------VGAIYRTTDGGKNWEALVEDA-AG-VVRNLRR-SPDGKY 186 (334)
T ss_pred CeEccCCcCCCCCc-----eEEEEECCCcceeeec------cceEEEECCCCCCceeCcCCC-cc-eEEEEEE-CCCCeE
Confidence 998863 22221 223333 445666642 23355444 46999887622 22 2223333 444556
Q ss_pred EEeCCCCcEEEE-ECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCCCCcceE-ecCC
Q 016368 304 VVNEGKGRLSKY-DADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLASPARAWL-VDPP 372 (390)
Q Consensus 304 v~gg~~~~v~~y-d~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~~~~~W~-~~~p 372 (390)
++.|..+.++.- |....+|+.+.. +....-.++... ++.++++|..+. +. +. .+..++.|+ +..|
T Consensus 187 v~~g~~G~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G~-~~-~~-s~d~G~sW~~~~~~ 254 (334)
T PRK13684 187 VAVSSRGNFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGGQ-IR-FN-DPDDLESWSKPIIP 254 (334)
T ss_pred EEEeCCceEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCCE-EE-Ec-cCCCCCccccccCC
Confidence 666666766654 455567999864 333333444443 788888865543 32 21 233445788 4444
No 117
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=93.79 E-value=5.3 Score=36.84 Aligned_cols=157 Identities=10% Similarity=0.145 Sum_probs=83.8
Q ss_pred cCCCceEEeec--CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCC--cceEEEEECCEEEEEeccCCCCCCC
Q 016368 136 RKLPVQSLGVR--NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPR--RWCAMGSVGGVVYVASGVGAHYRGD 211 (390)
Q Consensus 136 ~~~~~~~~~~~--~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r--~~~~~~~~~~~lyv~GG~~~~~~~~ 211 (390)
+..++-+++++ ..+++.||+. +..++|+..++.|--. +.... ...+....++.+.+.|+.++
T Consensus 63 H~~svFavsl~P~~~l~aTGGgD-------D~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdmsG----- 128 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGD-------DLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMSG----- 128 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCC-------ceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCCc-----
Confidence 33333444443 4677777663 3577889888875322 21111 22233345788888888776
Q ss_pred ccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCC
Q 016368 212 VARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNG 291 (390)
Q Consensus 212 ~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~ 291 (390)
.+.++...++... |.....+..-.+-+- | -.+.++..| .....+++|...++.-.++-++ +.....
T Consensus 129 ---~v~v~~~stg~~~--~~~~~e~~dieWl~W-H----p~a~illAG---~~DGsvWmw~ip~~~~~kv~~G-h~~~ct 194 (399)
T KOG0296|consen 129 ---KVLVFKVSTGGEQ--WKLDQEVEDIEWLKW-H----PRAHILLAG---STDGSVWMWQIPSQALCKVMSG-HNSPCT 194 (399)
T ss_pred ---cEEEEEcccCceE--EEeecccCceEEEEe-c----ccccEEEee---cCCCcEEEEECCCcceeeEecC-CCCCcc
Confidence 6677777766532 665433322111000 1 023344442 1123355666666522222221 122222
Q ss_pred ceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368 292 PAASTMNEEELYVVNEGKGRLSKYDADHDW 321 (390)
Q Consensus 292 ~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~ 321 (390)
.+-.. .+|+..+.|..++.+.+||+++..
T Consensus 195 ~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 195 CGEFI-PDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred ccccc-CCCceEEEEecCceEEEEecCCCc
Confidence 23333 678988888889999999999864
No 118
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=93.33 E-value=1.1 Score=40.86 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=72.8
Q ss_pred eEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEE
Q 016368 268 GAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAV 347 (390)
Q Consensus 268 ~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~ 347 (390)
+.+.|..+++=-.-.-.||. +--. .+|+||+.....+.+..+|+++.+...+..+|.... ++..+ |.+.++
T Consensus 187 G~vidv~s~evl~~GLsmPh-----SPRW-hdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r--GL~f~-G~llvV 257 (335)
T TIGR03032 187 GCVIDIPSGEVVASGLSMPH-----SPRW-YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR--GLAFA-GDFAFV 257 (335)
T ss_pred eEEEEeCCCCEEEcCccCCc-----CCcE-eCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc--cccee-CCEEEE
Confidence 44677777743322211222 2222 899999999989999999999999999998875332 34444 666667
Q ss_pred eeC--------------------CceEEEEEcCCCCCcceEecCCCCeeEEEEEeecccccC
Q 016368 348 CEN--------------------GERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPRMCKQ 389 (390)
Q Consensus 348 g~~--------------------~~~v~~~d~~~~~~~~W~~~~p~g~~~~~~~~~~~~~~~ 389 (390)
|-. ...++++|+.+...-.|--.--.--++..|++||.+.-|
T Consensus 258 gmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r~P 319 (335)
T TIGR03032 258 GLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVRRP 319 (335)
T ss_pred EeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCCCCc
Confidence 711 126889999888543344221111267888999986544
No 119
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.25 E-value=8.2 Score=37.12 Aligned_cols=190 Identities=11% Similarity=0.053 Sum_probs=97.8
Q ss_pred CCCcEEEeCCCCcee--cCCCCCCCCc-ceEEEEE-CCE-EEEEeccCCCCCCCccCeEEEEECCCC-----ccccccEE
Q 016368 163 LASPLAFNPQSNTWF--FGPQLSIPRR-WCAMGSV-GGV-VYVASGVGAHYRGDVARSMKKWDLKSD-----REDWKWEK 232 (390)
Q Consensus 163 ~~~~~~~dp~t~~W~--~~~~~~~~r~-~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~-----~~~~~W~~ 232 (390)
...++.+...+..-. .+-.-+.... ...+..- +++ |++...... ..+.+++.|.... . |+.
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~-----~~s~v~~~d~~~~~~~~~~----~~~ 271 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT-----SESEVYLLDLDDGGSPDAK----PKL 271 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS-----SEEEEEEEECCCTTTSS-S----EEE
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc-----cCCeEEEEeccccCCCcCC----cEE
Confidence 556888887776544 2212222222 2222222 444 333332221 2468899999875 5 887
Q ss_pred cccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCC---eE-ecCCCCCCCCCCceEEEeeCCeEEEEeCC
Q 016368 233 KAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDK---WK-EMPEGMHAGWNGPAASTMNEEELYVVNEG 308 (390)
Q Consensus 233 ~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~---W~-~~~~~~~~~~~~~~~~~~~~g~lyv~gg~ 308 (390)
+..--... .+.+...++.+|+..-.+.....+..+++.... |. .+.+ ......-..+.+ .++.|++..-.
T Consensus 272 l~~~~~~~----~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~-~~~~~~l~~~~~-~~~~Lvl~~~~ 345 (414)
T PF02897_consen 272 LSPREDGV----EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP-EDEDVSLEDVSL-FKDYLVLSYRE 345 (414)
T ss_dssp EEESSSS-----EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEE-ETTEEEEEEEE
T ss_pred EeCCCCce----EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcC-CCCceeEEEEEE-ECCEEEEEEEE
Confidence 76533322 244555699999986333333456678887664 66 4433 212222334443 78999988765
Q ss_pred CC--cEEEEECCCCceEEcc-cccccccceeEEE--ECCEEEEEeeC---CceEEEEEcCCCCCcceE
Q 016368 309 KG--RLSKYDADHDWWDEVI-ELAELKGAEKITA--ARGRVCAVCEN---GERIMVVDVLASPARAWL 368 (390)
Q Consensus 309 ~~--~v~~yd~~~~~W~~i~-~~p~~r~~~~~~~--~~g~l~i~g~~---~~~v~~~d~~~~~~~~W~ 368 (390)
++ .+.+||.. ..|.... .+|..-...++.. -.+.+++.-.. -..++.||+.+...+.|.
T Consensus 346 ~~~~~l~v~~~~-~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 346 NGSSRLRVYDLD-DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp TTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred CCccEEEEEECC-CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 55 88999988 2333332 2332211112221 14555554332 238899999988544443
No 120
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.83 E-value=11 Score=37.35 Aligned_cols=106 Identities=11% Similarity=0.116 Sum_probs=54.7
Q ss_pred CCcEEEeCCCC--ceecCCCCC----CCC-cceEEEEEC-CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc
Q 016368 164 ASPLAFNPQSN--TWFFGPQLS----IPR-RWCAMGSVG-GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ 235 (390)
Q Consensus 164 ~~~~~~dp~t~--~W~~~~~~~----~~r-~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~ 235 (390)
..++.+|..|+ .|+.-.... .+. .....++.+ ++||+... ...+..+|.+|++. .|+.-..
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---------~g~v~AlD~~TG~~--~W~~~~~ 139 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---------DGRLVALDAETGKQ--VWKFGNN 139 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---------CCeEEEEECCCCCE--eeeecCC
Confidence 57888898876 476532221 111 111234446 78887432 23788899988763 3875433
Q ss_pred CCCCCccccceEEEEECCEEEEEcccCC-----CCceeEEEeCCCC--CeEe
Q 016368 236 LKDGRFSREAVEAVGFKGNLCMVNLKGN-----GAKDGAIYNVELD--KWKE 280 (390)
Q Consensus 236 ~~~~~~~r~~~~~~~~~g~lyv~gg~g~-----~~~~~~~yd~~~~--~W~~ 280 (390)
-..........+.++.++.+|+-...+. ......++|.+++ .|+.
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence 2210000001334456777775421111 1234568898766 5875
No 121
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.69 E-value=8 Score=35.49 Aligned_cols=183 Identities=13% Similarity=0.148 Sum_probs=78.2
Q ss_pred eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEE
Q 016368 141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKW 219 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~y 219 (390)
...++.+....+.+. ...+++=.-.-.+|+.+..-.. -.-...... ++++++++.... -....
T Consensus 108 ~i~~l~~~~~~l~~~-------~G~iy~T~DgG~tW~~~~~~~~-gs~~~~~r~~dG~~vavs~~G~--------~~~s~ 171 (302)
T PF14870_consen 108 GITALGDGSAELAGD-------RGAIYRTTDGGKTWQAVVSETS-GSINDITRSSDGRYVAVSSRGN--------FYSSW 171 (302)
T ss_dssp EEEEEETTEEEEEET-------T--EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTSS--------EEEEE
T ss_pred EEEEcCCCcEEEEcC-------CCcEEEeCCCCCCeeEcccCCc-ceeEeEEECCCCcEEEEECccc--------EEEEe
Confidence 444455544444432 1345554445568987643222 112222333 566555553332 33456
Q ss_pred ECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEe--CCCCCeEecCCCCCCCCCC-ceEEE
Q 016368 220 DLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYN--VELDKWKEMPEGMHAGWNG-PAAST 296 (390)
Q Consensus 220 d~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd--~~~~~W~~~~~~~~~~~~~-~~~~~ 296 (390)
|+.... |+........+. ......-++.++++. + +..+..=+ ...++|++...+......+ ..++.
T Consensus 172 ~~G~~~----w~~~~r~~~~ri---q~~gf~~~~~lw~~~-~---Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 172 DPGQTT----WQPHNRNSSRRI---QSMGFSPDGNLWMLA-R---GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY 240 (302)
T ss_dssp -TT-SS-----EEEE--SSS-E---EEEEE-TTS-EEEEE-T---TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred cCCCcc----ceEEccCcccee---hhceecCCCCEEEEe-C---CcEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence 777778 987766544433 222333577888873 1 11122222 2345888743312223332 34444
Q ss_pred eeCCeEEEEeCCCCcEEEEECCCCceEEcccccc-cccceeEEEE-CCEEEEEeeCC
Q 016368 297 MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAE-LKGAEKITAA-RGRVCAVCENG 351 (390)
Q Consensus 297 ~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~-~r~~~~~~~~-~g~l~i~g~~~ 351 (390)
.-++.+++.|| ++.+++=.-...+|++...... +-..+.++.. .++-+|+|.++
T Consensus 241 ~~~~~~wa~gg-~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G 296 (302)
T PF14870_consen 241 RPPNEIWAVGG-SGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG 296 (302)
T ss_dssp SSSS-EEEEES-TT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred cCCCCEEEEeC-CccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence 34688888877 4455544445688999875332 2233344444 67999996655
No 122
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.33 E-value=12 Score=36.46 Aligned_cols=178 Identities=10% Similarity=-0.027 Sum_probs=91.0
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS 242 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~ 242 (390)
..++++|..+++-+.+...+...... ...-+| +|++....++ ...++++|+.++. -+.+..-.....
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~-~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~----~~~lt~~~~~~~- 295 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAP-SFSPDGRRLALTLSRDG------NPEIYVMDLGSRQ----LTRLTNHFGIDT- 295 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCc-eECCCCCEEEEEEeCCC------CceEEEEECCCCC----eEECccCCCCcc-
Confidence 57999999988877665443211111 112244 4554432221 2478999999887 666543221111
Q ss_pred ccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC-eEEEEeCCCC--cEEEEECC
Q 016368 243 REAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKG--RLSKYDAD 318 (390)
Q Consensus 243 r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~--~v~~yd~~ 318 (390)
.....-+|+ +++.. ...+......+|..+++.+.+.. . +..........+| .|++..+.++ .++.+|..
T Consensus 296 ---~~~~spDG~~l~f~s-d~~g~~~iy~~dl~~g~~~~lt~-~--g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 296 ---EPTWAPDGKSIYFTS-DRGGRPQIYRVAASGGSAERLTF-Q--GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred ---ceEECCCCCEEEEEE-CCCCCceEEEEECCCCCeEEeec-C--CCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 112223554 44432 11123456778888887776653 1 1111122221455 4444444332 79999998
Q ss_pred CCceEEcccccccccceeEEEECCEEEEEeeC---CceEEEEEcCCC
Q 016368 319 HDWWDEVIELAELKGAEKITAARGRVCAVCEN---GERIMVVDVLAS 362 (390)
Q Consensus 319 ~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~---~~~v~~~d~~~~ 362 (390)
+...+.+..-... ... ...-+|+.+++... ...++++|+...
T Consensus 369 ~g~~~~Lt~~~~~-~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 369 TGSVRTLTPGSLD-ESP-SFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCeEECCCCCCC-CCc-eECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 8888766532211 111 22235554444322 346788887543
No 123
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=92.08 E-value=3 Score=37.23 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=38.3
Q ss_pred CCCCCCCceEEE--eeCC-eEEEEeCCCC-------------------cEEEEECCCCceEEccccccc---ccceeEEE
Q 016368 285 MHAGWNGPAAST--MNEE-ELYVVNEGKG-------------------RLSKYDADHDWWDEVIELAEL---KGAEKITA 339 (390)
Q Consensus 285 ~~~~~~~~~~~~--~~~g-~lyv~gg~~~-------------------~v~~yd~~~~~W~~i~~~p~~---r~~~~~~~ 339 (390)
.|.+|++|++-+ .-+. ..++|||.+. .|+..|++-...+. ..+|.. ...|...+
T Consensus 84 vP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~ta-h~lpEl~dG~SFHvsla 162 (337)
T PF03089_consen 84 VPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTA-HTLPELQDGQSFHVSLA 162 (337)
T ss_pred CCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccccccc-ccchhhcCCeEEEEEEe
Confidence 789999998766 1222 3445666321 56666666544433 224433 33455555
Q ss_pred ECCEEEEEee
Q 016368 340 ARGRVCAVCE 349 (390)
Q Consensus 340 ~~g~l~i~g~ 349 (390)
-+|.|||+|+
T Consensus 163 r~D~VYilGG 172 (337)
T PF03089_consen 163 RNDCVYILGG 172 (337)
T ss_pred cCceEEEEcc
Confidence 6999999985
No 124
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.96 E-value=13 Score=36.15 Aligned_cols=138 Identities=8% Similarity=-0.028 Sum_probs=71.0
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEEECCE-EEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGV-VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS 242 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~ 242 (390)
.+++++|..+++.+.+......-... .-.-+++ |+...... ....++.+|+.+.. -+.+.......
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~~-~wSPDG~~I~f~s~~~------g~~~Iy~~d~~~g~----~~~lt~~~~~~-- 333 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTEP-TWFPDSQNLAYTSDQA------GRPQVYKVNINGGA----PQRITWEGSQN-- 333 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCce-EECCCCCEEEEEeCCC------CCceEEEEECCCCC----eEEeecCCCCc--
Confidence 36999999988877665432111111 1112444 44433221 12478888888876 55553321111
Q ss_pred ccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC---cEEEEECCC
Q 016368 243 REAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG---RLSKYDADH 319 (390)
Q Consensus 243 r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~---~v~~yd~~~ 319 (390)
......-+|+..++.....+.....++|+++++++.+.. .. .-..+... .||+..++...++ .++..+...
T Consensus 334 --~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~-~~-~~~~p~~S--pDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 334 --QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD-TF-LDETPSIA--PNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred --cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC-CC-CCCCceEC--CCCCEEEEEEcCCCceEEEEEECCC
Confidence 112223455544442222233456789999998887765 21 11223333 6777776665443 355555543
Q ss_pred C
Q 016368 320 D 320 (390)
Q Consensus 320 ~ 320 (390)
.
T Consensus 408 ~ 408 (429)
T PRK03629 408 R 408 (429)
T ss_pred C
Confidence 3
No 125
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.96 E-value=19 Score=38.12 Aligned_cols=175 Identities=4% Similarity=-0.005 Sum_probs=82.5
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEE--ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGS--VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF 241 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~ 241 (390)
..+.+||..+++-.. .+.....-.++.. -++.+++.|+.+. .+.+||..+.... ...+.. ....
T Consensus 598 g~v~iWd~~~~~~~~--~~~~~~~v~~v~~~~~~g~~latgs~dg--------~I~iwD~~~~~~~--~~~~~~--h~~~ 663 (793)
T PLN00181 598 GSVKLWSINQGVSIG--TIKTKANICCVQFPSESGRSLAFGSADH--------KVYYYDLRNPKLP--LCTMIG--HSKT 663 (793)
T ss_pred CEEEEEECCCCcEEE--EEecCCCeEEEEEeCCCCCEEEEEeCCC--------eEEEEECCCCCcc--ceEecC--CCCC
Confidence 357888887653211 1111111112222 1467777776654 7889998764300 111111 1100
Q ss_pred cccceEEEEECCEEEEEcccCCCCceeEEEeCCCC----CeEecCCCCC-CCCCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368 242 SREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD----KWKEMPEGMH-AGWNGPAASTMNEEELYVVNEGKGRLSKYD 316 (390)
Q Consensus 242 ~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~----~W~~~~~~~~-~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd 316 (390)
-..+...++..++.++ ....+.+||+.+. .|..+.. .. .......++...++.+++.|+.++.+..|+
T Consensus 664 ---V~~v~f~~~~~lvs~s---~D~~ikiWd~~~~~~~~~~~~l~~-~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 664 ---VSYVRFVDSSTLVSSS---TDNTLKLWDLSMSISGINETPLHS-FMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred ---EEEEEEeCCCEEEEEE---CCCEEEEEeCCCCccccCCcceEE-EcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 1233334555555531 2334668887643 2332222 11 111111222225678888888899999998
Q ss_pred CCCCc--eEEcc----ccc-----ccccceeEEEE--CCEEEEEeeCCceEEEEEc
Q 016368 317 ADHDW--WDEVI----ELA-----ELKGAEKITAA--RGRVCAVCENGERIMVVDV 359 (390)
Q Consensus 317 ~~~~~--W~~i~----~~p-----~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~ 359 (390)
..... |.... ..+ ........+.+ ++...+.|..++.|.+||+
T Consensus 737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 76432 22110 010 00111222222 5566666666778888875
No 126
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=91.71 E-value=9.6 Score=34.25 Aligned_cols=176 Identities=11% Similarity=0.138 Sum_probs=89.5
Q ss_pred CcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc-c
Q 016368 165 SPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS-R 243 (390)
Q Consensus 165 ~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~-r 243 (390)
.+.+||..|..=...-+||..-.-.++-.-.+.....||.+. ..-+|+.++.. =+....+...... .
T Consensus 78 klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN--------~Csiy~ls~~d----~~g~~~v~r~l~gHt 145 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN--------KCSIYPLSTRD----AEGNVRVSRELAGHT 145 (343)
T ss_pred eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc--------eeEEEeccccc----ccccceeeeeecCcc
Confidence 466677654433333334333222222233677888888875 67789988663 1111111111110 0
Q ss_pred cceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEE---eeCCeEEEEeCCCCcEEEEECCC
Q 016368 244 EAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAAST---MNEEELYVVNEGKGRLSKYDADH 319 (390)
Q Consensus 244 ~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~g~lyv~gg~~~~v~~yd~~~ 319 (390)
...+++. .++.-.+. +.|..+-..+|.++.+=... + .++.+-.++. ..+++.|+-|+.+.....||...
T Consensus 146 gylScC~f~dD~~ilT---~SGD~TCalWDie~g~~~~~---f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~ 218 (343)
T KOG0286|consen 146 GYLSCCRFLDDNHILT---GSGDMTCALWDIETGQQTQV---F-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS 218 (343)
T ss_pred ceeEEEEEcCCCceEe---cCCCceEEEEEcccceEEEE---e-cCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence 0233443 34333333 22445566889888753322 1 2233322222 23889999999999888899887
Q ss_pred CceEEcccccccccce-eEEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368 320 DWWDEVIELAELKGAE-KITAA-RGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 320 ~~W~~i~~~p~~r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~ 361 (390)
..-.+.- +...... ++..+ +|.-+.-|.++...-+||+..
T Consensus 219 ~~c~qtF--~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 219 GQCVQTF--EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred cceeEee--cccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 6544432 2221111 12222 555666655555666666655
No 127
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.55 E-value=5.8 Score=39.66 Aligned_cols=119 Identities=18% Similarity=0.270 Sum_probs=68.7
Q ss_pred EEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc-----ccceEEEEECCEEEEEcccCCC
Q 016368 190 AMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS-----REAVEAVGFKGNLCMVNLKGNG 264 (390)
Q Consensus 190 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~-----r~~~~~~~~~g~lyv~gg~g~~ 264 (390)
+-++.++.||+.... ..+..+|.+|++. .|+.-...+..... ....+.++.++++|+.. .
T Consensus 64 tPvv~~g~vyv~s~~---------g~v~AlDa~TGk~--lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t----~ 128 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY---------SRVYALDAKTGKE--LWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT----L 128 (527)
T ss_pred CCEEECCEEEEECCC---------CcEEEEECCCCce--eeEecCCCCcccccccccccccccceEECCEEEEEc----C
Confidence 345678999985432 2688899988763 38754432211110 00123456788999863 2
Q ss_pred CceeEEEeCCCC--CeEecCCCCCCCC-CCceEEEeeCCeEEEEeC-----CCCcEEEEECCCCc--eEE
Q 016368 265 AKDGAIYNVELD--KWKEMPEGMHAGW-NGPAASTMNEEELYVVNE-----GKGRLSKYDADHDW--WDE 324 (390)
Q Consensus 265 ~~~~~~yd~~~~--~W~~~~~~~~~~~-~~~~~~~~~~g~lyv~gg-----~~~~v~~yd~~~~~--W~~ 324 (390)
.....++|.+++ .|+.......... ...+.++ .+|.||+-.. .++.+..||.++.+ |+.
T Consensus 129 dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 129 DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CCEEEEEECCCCCEEeecccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 345778999876 5876432122111 1122333 6888776532 24688999998764 764
No 128
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=91.28 E-value=15 Score=35.70 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=54.7
Q ss_pred eEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCCC--CcceE
Q 016368 293 AASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLASP--ARAWL 368 (390)
Q Consensus 293 ~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~~--~~~W~ 368 (390)
++++..++..+++||.++++.+|..+.+.-.+...+-..|...+.+.+ ++..+..|.....+.+||+.+.. ...|.
T Consensus 448 ~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~ 527 (603)
T KOG0318|consen 448 AVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWA 527 (603)
T ss_pred eEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceee
Confidence 333337899999999999999999988776666656667777777766 55555554446689999987753 23565
No 129
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.18 E-value=11 Score=34.00 Aligned_cols=149 Identities=14% Similarity=0.125 Sum_probs=76.3
Q ss_pred eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCCCccCeEEEE
Q 016368 141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGS-VGGVVYVASGVGAHYRGDVARSMKKW 219 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~y 219 (390)
.++..+++--++.|+. -..+-.||..+++-..+.....|......+- .+..+.+.|..+. ++.-+
T Consensus 77 ~v~WsddgskVf~g~~------Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK--------TlKfW 142 (347)
T KOG0647|consen 77 DVCWSDDGSKVFSGGC------DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK--------TLKFW 142 (347)
T ss_pred EEEEccCCceEEeecc------CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEeccccc--------ceeec
Confidence 5555655544444432 3467889999998887765544332211111 1223444444432 55556
Q ss_pred ECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCCCCceEEEe
Q 016368 220 DLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGWNGPAASTM 297 (390)
Q Consensus 220 d~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~ 297 (390)
|+.... =-..-.||... +++-+... |.+++ ...+.+.+|+++.. +.+.+..++ .-.....++.
T Consensus 143 D~R~~~----pv~t~~LPeRv-----Ya~Dv~~p-m~vVa---ta~r~i~vynL~n~~te~k~~~SpL-k~Q~R~va~f- 207 (347)
T KOG0647|consen 143 DTRSSN----PVATLQLPERV-----YAADVLYP-MAVVA---TAERHIAVYNLENPPTEFKRIESPL-KWQTRCVACF- 207 (347)
T ss_pred ccCCCC----eeeeeecccee-----eehhccCc-eeEEE---ecCCcEEEEEcCCCcchhhhhcCcc-cceeeEEEEE-
Confidence 665433 11111233321 33333333 33331 14566779999755 444444422 2222333443
Q ss_pred eCCeEEEEeCCCCcEEEEECC
Q 016368 298 NEEELYVVNEGKGRLSKYDAD 318 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~ 318 (390)
.+...|.+|+.+|.+......
T Consensus 208 ~d~~~~alGsiEGrv~iq~id 228 (347)
T KOG0647|consen 208 QDKDGFALGSIEGRVAIQYID 228 (347)
T ss_pred ecCCceEeeeecceEEEEecC
Confidence 788899999998876666544
No 130
>PTZ00420 coronin; Provisional
Probab=91.06 E-value=19 Score=36.34 Aligned_cols=142 Identities=10% Similarity=0.086 Sum_probs=70.5
Q ss_pred EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCC
Q 016368 197 VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVEL 275 (390)
Q Consensus 197 ~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~ 275 (390)
.+++.||.+. .+.+||..+... -..+. .+.. ..+++. .+|.+++.++ ....+.+||+.+
T Consensus 139 ~iLaSgS~Dg--------tIrIWDl~tg~~---~~~i~-~~~~-----V~SlswspdG~lLat~s---~D~~IrIwD~Rs 198 (568)
T PTZ00420 139 YIMCSSGFDS--------FVNIWDIENEKR---AFQIN-MPKK-----LSSLKWNIKGNLLSGTC---VGKHMHIIDPRK 198 (568)
T ss_pred eEEEEEeCCC--------eEEEEECCCCcE---EEEEe-cCCc-----EEEEEECCCCCEEEEEe---cCCEEEEEECCC
Confidence 4555666553 788899987651 11111 1111 123332 3677777641 234577999987
Q ss_pred CCeE-ecCCCCCCCCCCceEEE----eeCCeEEEEeCCCC----cEEEEECCC-CceEEcccccccccceeE-EE---EC
Q 016368 276 DKWK-EMPEGMHAGWNGPAAST----MNEEELYVVNEGKG----RLSKYDADH-DWWDEVIELAELKGAEKI-TA---AR 341 (390)
Q Consensus 276 ~~W~-~~~~~~~~~~~~~~~~~----~~~g~lyv~gg~~~----~v~~yd~~~-~~W~~i~~~p~~r~~~~~-~~---~~ 341 (390)
.+=. .+.. ..+......+. ..++..++.+|.++ .+..||... ..-.....+ ......+ .. ..
T Consensus 199 g~~i~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l--d~~~~~L~p~~D~~t 274 (568)
T PTZ00420 199 QEIASSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI--DNASAPLIPHYDEST 274 (568)
T ss_pred CcEEEEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe--cCCccceEEeeeCCC
Confidence 5321 1111 11111111111 02445555555443 689999874 221111111 1111111 12 24
Q ss_pred CEEEEEeeCCceEEEEEcCCC
Q 016368 342 GRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 342 g~l~i~g~~~~~v~~~d~~~~ 362 (390)
|.+|+.|.++..|.+||+...
T Consensus 275 g~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 275 GLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCEEEEEECCCeEEEEEccCC
Confidence 789999888889999998654
No 131
>smart00284 OLF Olfactomedin-like domains.
Probab=90.69 E-value=8.8 Score=34.16 Aligned_cols=128 Identities=10% Similarity=0.156 Sum_probs=75.8
Q ss_pred CCEEEEEcccCCCCceeEEEeC----CCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccc
Q 016368 252 KGNLCMVNLKGNGAKDGAIYNV----ELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIE 327 (390)
Q Consensus 252 ~g~lyv~gg~g~~~~~~~~yd~----~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~ 327 (390)
++++|+..+.+........|.. ....+.+.-. +|.+..+.+.++ .+|.||.--..+..|.+||..+.+=.....
T Consensus 34 ~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~-Lp~~~~GtG~VV-YngslYY~~~~s~~iiKydL~t~~v~~~~~ 111 (255)
T smart00284 34 KSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHP-LPHAGQGTGVVV-YNGSLYFNKFNSHDICRFDLTTETYQKEPL 111 (255)
T ss_pred CceEEEEccccCCCcEEEEecCHHHHhccCCceEEE-CCCccccccEEE-ECceEEEEecCCccEEEEECCCCcEEEEEe
Confidence 5778887533222344445533 2334433333 566777888887 999999987777899999999987654444
Q ss_pred cccc----c--------cceeEEEECCEEEEEee---CCc--eEEEEEcCCCCC-cceEecCC-----CCeeEEEEE
Q 016368 328 LAEL----K--------GAEKITAARGRVCAVCE---NGE--RIMVVDVLASPA-RAWLVDPP-----RGFQVVAVH 381 (390)
Q Consensus 328 ~p~~----r--------~~~~~~~~~g~l~i~g~---~~~--~v~~~d~~~~~~-~~W~~~~p-----~g~~~~~~~ 381 (390)
+|.. + ...-+++-+.-|.+|-. ..+ .|.-+|+.+-.. +.|.+..+ ..|=+||+=
T Consensus 112 Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGvL 188 (255)
T smart00284 112 LNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMICGIL 188 (255)
T ss_pred cCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcccccccEEEeeEE
Confidence 5432 1 12345666666777632 222 334567665432 45986533 455555543
No 132
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.67 E-value=9.3 Score=38.21 Aligned_cols=115 Identities=11% Similarity=0.157 Sum_probs=68.4
Q ss_pred EEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCC--------CCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368 247 EAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGW--------NGPAASTMNEEELYVVNEGKGRLSKYD 316 (390)
Q Consensus 247 ~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~--------~~~~~~~~~~g~lyv~gg~~~~v~~yd 316 (390)
+.++.+|.||+.. ....+.++|.+++ .|+.-.. .+... .....++ .+++||+ +..++.++.+|
T Consensus 64 tPvv~~g~vyv~s----~~g~v~AlDa~TGk~lW~~~~~-~~~~~~~~~~~~~~~rg~av-~~~~v~v-~t~dg~l~ALD 136 (527)
T TIGR03075 64 QPLVVDGVMYVTT----SYSRVYALDAKTGKELWKYDPK-LPDDVIPVMCCDVVNRGVAL-YDGKVFF-GTLDARLVALD 136 (527)
T ss_pred CCEEECCEEEEEC----CCCcEEEEECCCCceeeEecCC-CCcccccccccccccccceE-ECCEEEE-EcCCCEEEEEE
Confidence 3456799999974 2235778998875 6886443 11110 1122343 6778775 44577999999
Q ss_pred CCCCc--eEEccc-cccc-ccceeEEEECCEEEEEeeC-----CceEEEEEcCCCCCcceEe
Q 016368 317 ADHDW--WDEVIE-LAEL-KGAEKITAARGRVCAVCEN-----GERIMVVDVLASPARAWLV 369 (390)
Q Consensus 317 ~~~~~--W~~i~~-~p~~-r~~~~~~~~~g~l~i~g~~-----~~~v~~~d~~~~~~~~W~~ 369 (390)
.++.+ |+.-.. .... ....+-++.+|+||+-... ...+..+|..+.. ..|..
T Consensus 137 a~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~-~lW~~ 197 (527)
T TIGR03075 137 AKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK-LVWRR 197 (527)
T ss_pred CCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCc-eeEec
Confidence 98765 765321 1111 1122345568888775321 3479999998764 36884
No 133
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=90.58 E-value=24 Score=37.28 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=94.0
Q ss_pred CEEEEEeccC-CCC-CCCccCeEEEEECCC-CccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEe
Q 016368 196 GVVYVASGVG-AHY-RGDVARSMKKWDLKS-DREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYN 272 (390)
Q Consensus 196 ~~lyv~GG~~-~~~-~~~~~~~~~~yd~~t-~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd 272 (390)
+..|++|-.- ... .....-.+.+|.... +. -+.+..+..... ..+.+.+||++..- -+..+-.|+
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~----L~~v~e~~v~Ga---v~aL~~fngkllA~-----In~~vrLye 854 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS----LELVAETVVKGA---VYALVEFNGKLLAG-----INQSVRLYE 854 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCc----eeeeeeeeeccc---eeehhhhCCeEEEe-----cCcEEEEEE
Confidence 5667776431 110 112233566666655 55 677777654433 37778899998765 456677898
Q ss_pred CCCCC-eEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC-cEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeC
Q 016368 273 VELDK-WKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG-RLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCEN 350 (390)
Q Consensus 273 ~~~~~-W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~ 350 (390)
..+++ -+.-.. ...+.....+.+ .++.|++-.-... .+..|+...+...+++.--.+++-.++..+++..|+.+..
T Consensus 855 ~t~~~eLr~e~~-~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~ 932 (1096)
T KOG1897|consen 855 WTTERELRIECN-ISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAEN 932 (1096)
T ss_pred ccccceehhhhc-ccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecc
Confidence 87772 221112 222222233343 7788887665444 7889999988899998777777777888889999998766
Q ss_pred CceEEEEE
Q 016368 351 GERIMVVD 358 (390)
Q Consensus 351 ~~~v~~~d 358 (390)
..++++..
T Consensus 933 ~gNlf~v~ 940 (1096)
T KOG1897|consen 933 SGNLFTVR 940 (1096)
T ss_pred cccEEEEE
Confidence 55555553
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=90.50 E-value=13 Score=33.60 Aligned_cols=130 Identities=8% Similarity=0.043 Sum_probs=70.8
Q ss_pred eEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceE
Q 016368 215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAA 294 (390)
Q Consensus 215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 294 (390)
.+-.||..++. -+..-....+ -..++..+..--+.|+ -...+-.||+.+..=..+.. -..+- .++
T Consensus 36 slrlYdv~~~~----l~~~~~~~~p-----lL~c~F~d~~~~~~G~---~dg~vr~~Dln~~~~~~igt-h~~~i--~ci 100 (323)
T KOG1036|consen 36 SLRLYDVPANS----LKLKFKHGAP-----LLDCAFADESTIVTGG---LDGQVRRYDLNTGNEDQIGT-HDEGI--RCI 100 (323)
T ss_pred cEEEEeccchh----hhhheecCCc-----eeeeeccCCceEEEec---cCceEEEEEecCCcceeecc-CCCce--EEE
Confidence 67788888776 2222111111 1444545544333421 23446689999887555554 11111 122
Q ss_pred EEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368 295 STMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 295 ~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
........++-|++++.+..+|+.... .+...-.....+++.+.++ ..|+|..+..+.+||+...
T Consensus 101 ~~~~~~~~vIsgsWD~~ik~wD~R~~~--~~~~~d~~kkVy~~~v~g~-~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWDKTIKFWDPRNKV--VVGTFDQGKKVYCMDVSGN-RLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred EeeccCCeEEEcccCccEEEEeccccc--cccccccCceEEEEeccCC-EEEEeecCceEEEEEcccc
Confidence 211234556788899999999998611 1111112223444555554 5555677889999999875
No 135
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.27 E-value=13 Score=33.16 Aligned_cols=169 Identities=13% Similarity=0.075 Sum_probs=91.9
Q ss_pred ceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC---Ccccc---ceEE
Q 016368 175 TWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG---RFSRE---AVEA 248 (390)
Q Consensus 175 ~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~---~~~r~---~~~~ 248 (390)
+..+.-.+|.+-.+.+.++++|.+|.-- ...+.+-.||+.++.. -.+..++.-... ..... ....
T Consensus 58 ~~~~~~~Lp~~~~GtG~vVYngslYY~~--------~~s~~IvkydL~t~~v-~~~~~L~~A~~~n~~~y~~~~~t~iD~ 128 (250)
T PF02191_consen 58 RSSRTYKLPYPWQGTGHVVYNGSLYYNK--------YNSRNIVKYDLTTRSV-VARRELPGAGYNNRFPYYWSGYTDIDF 128 (250)
T ss_pred CCceEEEEeceeccCCeEEECCcEEEEe--------cCCceEEEEECcCCcE-EEEEECCccccccccceecCCCceEEE
Confidence 3333344556677788889999999763 3456899999999871 003334332111 00000 1334
Q ss_pred EEECCEEEEEcccCC-CC-ceeEEEeCCC----CCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC----cEEEEECC
Q 016368 249 VGFKGNLCMVNLKGN-GA-KDGAIYNVEL----DKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG----RLSKYDAD 318 (390)
Q Consensus 249 ~~~~g~lyv~gg~g~-~~-~~~~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~----~v~~yd~~ 318 (390)
++-++-|+++-.... .+ -.+...|+.+ .+|..- .+....+.+.. +=|.||++...+. -.+.||..
T Consensus 129 AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~---~~k~~~~naFm--vCGvLY~~~s~~~~~~~I~yafDt~ 203 (250)
T PF02191_consen 129 AVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS---YPKRSAGNAFM--VCGVLYATDSYDTRDTEIFYAFDTY 203 (250)
T ss_pred EEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec---cCchhhcceee--EeeEEEEEEECCCCCcEEEEEEECC
Confidence 445556777632211 11 1223566654 467753 22333322222 3489999987542 56889999
Q ss_pred CCceEEccccccc--ccceeEEEE---CCEEEEEeeCCceEEEEEcC
Q 016368 319 HDWWDEVIELAEL--KGAEKITAA---RGRVCAVCENGERIMVVDVL 360 (390)
Q Consensus 319 ~~~W~~i~~~p~~--r~~~~~~~~---~g~l~i~g~~~~~v~~~d~~ 360 (390)
+++=..+. ++.. -...++... +.+||+. .+ ..++.|++.
T Consensus 204 t~~~~~~~-i~f~~~~~~~~~l~YNP~dk~LY~w-d~-G~~v~Y~v~ 247 (250)
T PF02191_consen 204 TGKEEDVS-IPFPNPYGNISMLSYNPRDKKLYAW-DN-GYQVTYDVR 247 (250)
T ss_pred CCceecee-eeeccccCceEeeeECCCCCeEEEE-EC-CeEEEEEEE
Confidence 87665433 3332 234455554 5678886 33 356666653
No 136
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=90.26 E-value=14 Score=34.27 Aligned_cols=134 Identities=18% Similarity=0.156 Sum_probs=77.0
Q ss_pred CCcEEEeCCCC-----ceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC
Q 016368 164 ASPLAFNPQSN-----TWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD 238 (390)
Q Consensus 164 ~~~~~~dp~t~-----~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~ 238 (390)
..+++|+.... +.+.+......-.-.+++.++++|.+..| +.+.+|+...+. ++...+.+..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g----------~~l~v~~l~~~~---~l~~~~~~~~ 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG----------NKLYVYDLDNSK---TLLKKAFYDS 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET----------TEEEEEEEETTS---SEEEEEEE-B
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec----------CEEEEEEccCcc---cchhhheecc
Confidence 67999998884 55555444444445677777999666554 266777776554 1777776655
Q ss_pred CCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee-CCeEEEEeCCCC--cEEEE
Q 016368 239 GRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN-EEELYVVNEGKG--RLSKY 315 (390)
Q Consensus 239 ~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~g~lyv~gg~~~--~v~~y 315 (390)
+.. ..+..+.++.+++-. -..+-....|+.+..+-..+.. -..++...++.. + ++..++++...+ .++.|
T Consensus 129 ~~~---i~sl~~~~~~I~vgD--~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~-l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 129 PFY---ITSLSVFKNYILVGD--AMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEF-LVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp SSS---EEEEEEETTEEEEEE--SSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEE-E-SSSEEEEEETTSEEEEEEE
T ss_pred eEE---EEEEeccccEEEEEE--cccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEE-ecCCcEEEEEcCCCeEEEEEE
Confidence 444 466777888777642 0112223467876666777665 223333334444 4 666555555566 45566
Q ss_pred EC
Q 016368 316 DA 317 (390)
Q Consensus 316 d~ 317 (390)
++
T Consensus 202 ~~ 203 (321)
T PF03178_consen 202 NP 203 (321)
T ss_dssp -S
T ss_pred CC
Confidence 65
No 137
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.95 E-value=21 Score=35.04 Aligned_cols=189 Identities=10% Similarity=0.073 Sum_probs=99.5
Q ss_pred ecCeEEEEEeecCCCCCCCCCcEEEeCCCC--ceecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCCCccCeEEEEEC
Q 016368 145 VRNNLVLIAATTPHFLPALASPLAFNPQSN--TWFFGPQLSIPRRWCAMGS-VGGVVYVASGVGAHYRGDVARSMKKWDL 221 (390)
Q Consensus 145 ~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~--~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~ 221 (390)
..++.+++.|... ..+.+||...+ .-+.+..+.... ++++. ..+.+++.|+.+. .+.++|.
T Consensus 212 s~d~~~l~s~s~D------~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D~--------tvriWd~ 275 (456)
T KOG0266|consen 212 SPDGSYLLSGSDD------KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDDG--------TVRIWDV 275 (456)
T ss_pred CCCCcEEEEecCC------ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCCC--------cEEEEec
Confidence 3344455555422 35777887333 223444443333 33332 2557888888775 7889999
Q ss_pred CCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeE---ecCCCCCCCCCCceEEEee
Q 016368 222 KSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWK---EMPEGMHAGWNGPAASTMN 298 (390)
Q Consensus 222 ~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~---~~~~~~~~~~~~~~~~~~~ 298 (390)
++.+ -...-....... ......-++.+++.+ .......+||+.++.-. .+.. .........+....
T Consensus 276 ~~~~----~~~~l~~hs~~i---s~~~f~~d~~~l~s~---s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp 344 (456)
T KOG0266|consen 276 RTGE----CVRKLKGHSDGI---SGLAFSPDGNLLVSA---SYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSP 344 (456)
T ss_pred cCCe----EEEeeeccCCce---EEEEECCCCCEEEEc---CCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECC
Confidence 9866 332222222111 122223466666663 11334568999888743 2222 11211112222224
Q ss_pred CCeEEEEeCCCCcEEEEECCCCc----eEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368 299 EEELYVVNEGKGRLSKYDADHDW----WDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 299 ~g~lyv~gg~~~~v~~yd~~~~~----W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
+++..+.+..++.+..||..... |...... .+..+..+.. +++..+.|..+..|.+||+.+.
T Consensus 345 ~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 345 NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred CCcEEEEecCCCeEEEEEccCCcceeeecccCCc--ceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 66666666666677777777543 2222221 1222233323 6777777777889999999864
No 138
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=89.90 E-value=23 Score=35.49 Aligned_cols=174 Identities=9% Similarity=0.073 Sum_probs=93.5
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSR 243 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r 243 (390)
+.+.+|+..++.-..+-.- .-.--.++.+++.+.|.|.++. .+-+||+.+.+ -+..+..-..
T Consensus 311 ~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d~--------~v~VW~~~~~~------cl~sl~gH~~-- 372 (537)
T KOG0274|consen 311 NTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSYDG--------TVKVWDPRTGK------CLKSLSGHTG-- 372 (537)
T ss_pred ceEEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEecCc--------eEEEEEhhhce------eeeeecCCcc--
Confidence 4566777665443322110 0011123344666677666653 78889988765 2222211000
Q ss_pred cceEEEEECC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCce
Q 016368 244 EAVEAVGFKG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWW 322 (390)
Q Consensus 244 ~~~~~~~~~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W 322 (390)
......+++ ..++-| .-...+.++|+.+.+ +.+.. ........... .+.++.++-+..++.+..||.++..-
T Consensus 373 -~V~sl~~~~~~~~~Sg---s~D~~IkvWdl~~~~-~c~~t-l~~h~~~v~~l-~~~~~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 373 -RVYSLIVDSENRLLSG---SLDTTIKVWDLRTKR-KCIHT-LQGHTSLVSSL-LLRDNFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred -eEEEEEecCcceEEee---eeccceEeecCCchh-hhhhh-hcCCccccccc-ccccceeEeccccccEEEeecccCce
Confidence 122224555 444443 122456688887775 21111 11111111111 26788888888899999999988776
Q ss_pred EEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCCC
Q 016368 323 DEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASP 363 (390)
Q Consensus 323 ~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~ 363 (390)
.+...-+ +.....+...+....+.......+.++|+....
T Consensus 446 ~~~~~~~-~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 446 LRTLEGR-HVGGVSALALGKEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred eeeeccC-CcccEEEeecCcceEEEEecCCeeEEEecccCc
Confidence 6655433 333344444444666666777788888987753
No 139
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.77 E-value=18 Score=34.14 Aligned_cols=187 Identities=12% Similarity=0.128 Sum_probs=104.1
Q ss_pred EEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEE
Q 016368 142 SLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWD 220 (390)
Q Consensus 142 ~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd 220 (390)
.+.+-+..|++..+. ...+..+|..|+.-+..=+-..+-.-.+++-+ ++.-+|.|+-+. .+..+|
T Consensus 275 i~wSPDdryLlaCg~------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr--------~i~~wd 340 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGF------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR--------TIIMWD 340 (519)
T ss_pred EEECCCCCeEEecCc------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCC--------cEEEec
Confidence 334445555554332 23477888888866554332233334444444 677788877653 455566
Q ss_pred CCC---CccccccEEcccCCCCCccccceEEE-EECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEE
Q 016368 221 LKS---DREDWKWEKKAQLKDGRFSREAVEAV-GFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAAS 295 (390)
Q Consensus 221 ~~t---~~~~~~W~~~~~~~~~~~~r~~~~~~-~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~ 295 (390)
... +. |+-+... +. +.++ ..+|+ ++.++ -.+....|+.++..=..+-. ...+-. +.+
T Consensus 341 lDgn~~~~----W~gvr~~---~v----~dlait~Dgk~vl~v~----~d~~i~l~~~e~~~dr~lis-e~~~it--s~~ 402 (519)
T KOG0293|consen 341 LDGNILGN----WEGVRDP---KV----HDLAITYDGKYVLLVT----VDKKIRLYNREARVDRGLIS-EEQPIT--SFS 402 (519)
T ss_pred CCcchhhc----ccccccc---ee----EEEEEcCCCcEEEEEe----cccceeeechhhhhhhcccc-ccCcee--EEE
Confidence 543 34 8765541 11 3333 34554 66663 33445678877654332222 122222 333
Q ss_pred EeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccc-cc---eeEEEECCEEEEEe-eCCceEEEEEcCCC
Q 016368 296 TMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELK-GA---EKITAARGRVCAVC-ENGERIMVVDVLAS 362 (390)
Q Consensus 296 ~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r-~~---~~~~~~~g~l~i~g-~~~~~v~~~d~~~~ 362 (390)
..-++++.++.-.+..+..||.+ .|+.+......+ .. .+|...++.-+|.+ +.+.+|++|+..+.
T Consensus 403 iS~d~k~~LvnL~~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred EcCCCcEEEEEcccCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence 23789999998888899999998 566665443332 22 23444444345544 44668999997766
No 140
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.63 E-value=11 Score=32.32 Aligned_cols=158 Identities=15% Similarity=0.224 Sum_probs=88.1
Q ss_pred eEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCcee
Q 016368 189 CAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDG 268 (390)
Q Consensus 189 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~ 268 (390)
.+....+|+||.--|..+ ...+.++|..+++. .|++--. +...+ +-+.+..++.+|.. --+++
T Consensus 49 QGL~~~~g~i~esTG~yg------~S~ir~~~L~~gq~--~~s~~l~-~~~~F---gEGit~~gd~~y~L-----Tw~eg 111 (262)
T COG3823 49 QGLEYLDGHILESTGLYG------FSKIRVSDLTTGQE--IFSEKLA-PDTVF---GEGITKLGDYFYQL-----TWKEG 111 (262)
T ss_pred cceeeeCCEEEEeccccc------cceeEEEeccCceE--EEEeecC-Ccccc---ccceeeccceEEEE-----Eeccc
Confidence 345566888888877654 35788999997762 1443222 22223 45677889999998 23334
Q ss_pred EEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccc------ccccceeEEEECC
Q 016368 269 AIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELA------ELKGAEKITAARG 342 (390)
Q Consensus 269 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p------~~r~~~~~~~~~g 342 (390)
..|-...++..++.. .+..-.+.+++. -+..|.+-.| +..+..-||++- .+..... +-..--.+..++|
T Consensus 112 vaf~~d~~t~~~lg~-~~y~GeGWgLt~-d~~~LimsdG-satL~frdP~tf--a~~~~v~VT~~g~pv~~LNELE~VdG 186 (262)
T COG3823 112 VAFKYDADTLEELGR-FSYEGEGWGLTS-DDKNLIMSDG-SATLQFRDPKTF--AELDTVQVTDDGVPVSKLNELEWVDG 186 (262)
T ss_pred eeEEEChHHhhhhcc-cccCCcceeeec-CCcceEeeCC-ceEEEecCHHHh--hhcceEEEEECCeecccccceeeecc
Confidence 444444556666666 555555667774 4444444433 445666677652 2222111 1111223555677
Q ss_pred EEEEEeeCCceEEEEEcCCCCCcceE
Q 016368 343 RVCAVCENGERIMVVDVLASPARAWL 368 (390)
Q Consensus 343 ~l~i~g~~~~~v~~~d~~~~~~~~W~ 368 (390)
.||.--=....|+.+|+.+...-.|.
T Consensus 187 ~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 187 ELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred EEEEeeeeecceEEEcCCCCcEEEEE
Confidence 77753333456777777776555564
No 141
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.60 E-value=22 Score=34.84 Aligned_cols=175 Identities=9% Similarity=0.001 Sum_probs=96.4
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF 241 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~ 241 (390)
..++.++-.+.+-..+-.+. +...+.+.. +|...++|-.++ .+++||.++.. .+..+.....
T Consensus 197 ~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g--------~v~iwD~~~~k------~~~~~~~~h~ 260 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDG--------TVQIWDVKEQK------KTRTLRGSHA 260 (484)
T ss_pred ceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCC--------eEEEEehhhcc------ccccccCCcC
Confidence 46777888777766665554 444455544 467777765544 78999998766 3444433111
Q ss_pred cccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368 242 SREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW 321 (390)
Q Consensus 242 ~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~ 321 (390)
. ..++...++.+...|. ....+..+|.....=. +..........+++....++..+.-||.++.+.+||.....
T Consensus 261 ~--rvg~laW~~~~lssGs---r~~~I~~~dvR~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 261 S--RVGSLAWNSSVLSSGS---RDGKILNHDVRISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred c--eeEEEeccCceEEEec---CCCcEEEEEEecchhh-hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 1 2445556777777741 2334556665432100 00001122222333333678888889999999999984322
Q ss_pred eEEcccccccccc---eeEEEECCEEEEEeeC--CceEEEEEcCCC
Q 016368 322 WDEVIELAELKGA---EKITAARGRVCAVCEN--GERIMVVDVLAS 362 (390)
Q Consensus 322 W~~i~~~p~~r~~---~~~~~~~g~l~i~g~~--~~~v~~~d~~~~ 362 (390)
+.. ..-.+..+ .+.+-+...|...|++ +..|-+||+.+.
T Consensus 335 p~~--~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 335 PKF--TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred ccE--EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 221 11122222 2233345667777765 346778888764
No 142
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=89.33 E-value=17 Score=34.60 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=73.0
Q ss_pred ceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCC
Q 016368 188 WCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGA 265 (390)
Q Consensus 188 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~ 265 (390)
..++++. +|-|+..|-.+. .+.+||.++.. .++.+|..-.+ --+..+. ||...+.+ ...
T Consensus 350 ~ts~~fHpDgLifgtgt~d~--------~vkiwdlks~~------~~a~Fpght~~--vk~i~FsENGY~Lat~---add 410 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDG--------VVKIWDLKSQT------NVAKFPGHTGP--VKAISFSENGYWLATA---ADD 410 (506)
T ss_pred eEEeeEcCCceEEeccCCCc--------eEEEEEcCCcc------ccccCCCCCCc--eeEEEeccCceEEEEE---ecC
Confidence 4444444 566776655443 67889998776 34444432110 1223333 44433331 122
Q ss_pred ceeEEEeCCCCC-eEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEEC
Q 016368 266 KDGAIYNVELDK-WKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAAR 341 (390)
Q Consensus 266 ~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~ 341 (390)
..+.++|+.+.+ ...+.. +......++.....|....++|.+=.++.|+-.+..|+++..++...+-...+.++
T Consensus 411 ~~V~lwDLRKl~n~kt~~l--~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 411 GSVKLWDLRKLKNFKTIQL--DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred CeEEEEEehhhcccceeec--cccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeec
Confidence 336788887553 332222 12222223332234777777776668888999999999999887665444455553
No 143
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.25 E-value=20 Score=33.92 Aligned_cols=185 Identities=17% Similarity=0.236 Sum_probs=100.7
Q ss_pred CcEEEeCCCCc--eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368 165 SPLAFNPQSNT--WFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS 242 (390)
Q Consensus 165 ~~~~~dp~t~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~ 242 (390)
.++.+|+.+.+ |+................-+|+||+-... ..+++||..+.+. .|+.-.... ...
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~---------g~~y~ld~~~G~~--~W~~~~~~~-~~~- 145 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD---------GKLYALDASTGTL--VWSRNVGGS-PYY- 145 (370)
T ss_pred cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc---------ceEEEEECCCCcE--EEEEecCCC-eEE-
Confidence 78889999886 86533210011111122227887764321 1688999965542 288655441 112
Q ss_pred ccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCC-CCCCCCCceEEEeeCCeEEEEeCC-CCcEEEEECC
Q 016368 243 REAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEG-MHAGWNGPAASTMNEEELYVVNEG-KGRLSKYDAD 318 (390)
Q Consensus 243 r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~-~~~~~~~~~~~~~~~g~lyv~gg~-~~~v~~yd~~ 318 (390)
....++.++.+|+.. ......++|.++. .|+.-... .......... . .++.+|+-... ++.++.+|++
T Consensus 146 --~~~~v~~~~~v~~~s----~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~-~~~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 146 --ASPPVVGDGTVYVGT----DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-I-ASGTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred --ecCcEEcCcEEEEec----CCCeEEEEEccCCcEEEEEecCCccccccccCce-e-ecceEEEecCCCcceEEEEEcc
Confidence 344666788888762 2344566777654 68754331 1122222222 3 67777766432 4579999997
Q ss_pred CC--ceEEccccccc--------ccceeEEEECCEEEEEeeCCceEEEEEcCCCCCcceEecCC
Q 016368 319 HD--WWDEVIELAEL--------KGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPP 372 (390)
Q Consensus 319 ~~--~W~~i~~~p~~--------r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~~~p 372 (390)
+. .|+.-...+.. ......+..++.+|.. .....++.+|..+.. ..|....+
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~-~~~g~~~~l~~~~G~-~~W~~~~~ 279 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAG-SYGGKLLCLDADTGE-LIWSFPAG 279 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEEECCcEEEE-ecCCeEEEEEcCCCc-eEEEEecc
Confidence 64 48753222211 2223345556666555 334458888877653 36887664
No 144
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=89.18 E-value=16 Score=32.60 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=68.6
Q ss_pred CCceeEEEeCC-CCCeEecCCCCCCC--CCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE
Q 016368 264 GAKDGAIYNVE-LDKWKEMPEGMHAG--WNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA 340 (390)
Q Consensus 264 ~~~~~~~yd~~-~~~W~~~~~~~~~~--~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~ 340 (390)
..+.+-+++.. .++|..... +..+ |.--+++....|++.+.+.++..+..|.-..+.|..+..+-.+-....+++.
T Consensus 35 ~Dk~vriw~~~~~~s~~ck~v-ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaw 113 (312)
T KOG0645|consen 35 TDKAVRIWSTSSGDSWTCKTV-LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAW 113 (312)
T ss_pred CCceEEEEecCCCCcEEEEEe-ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEE
Confidence 44566788887 678887654 3222 2222333235788888888888888898888999998877666555556665
Q ss_pred --CCEEEEEeeCCceEEEEEcCCC
Q 016368 341 --RGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 341 --~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
.|......+++++||++++...
T Consensus 114 s~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 114 SASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred cCCCCEEEEeeCCCeEEEEEecCC
Confidence 5666666688999999998843
No 145
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=88.77 E-value=18 Score=32.75 Aligned_cols=128 Identities=11% Similarity=0.082 Sum_probs=66.9
Q ss_pred CcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcccc
Q 016368 165 SPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSRE 244 (390)
Q Consensus 165 ~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~ 244 (390)
.+..|+..+++-+. .+.....-..++..+..=.+.||.++ .+..||..+.. =..+..-..+.
T Consensus 36 slrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~dg--------~vr~~Dln~~~----~~~igth~~~i---- 97 (323)
T KOG1036|consen 36 SLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLDG--------QVRRYDLNTGN----EDQIGTHDEGI---- 97 (323)
T ss_pred cEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccCc--------eEEEEEecCCc----ceeeccCCCce----
Confidence 56677777662211 11111122344555555555666664 78899999987 34444322221
Q ss_pred ceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCC
Q 016368 245 AVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHD 320 (390)
Q Consensus 245 ~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~ 320 (390)
.++... .|++ |.| .-...+..+|+.... .......+....++ .+.|...|+|+.+..+..||..+.
T Consensus 98 -~ci~~~~~~~~v-Isg---sWD~~ik~wD~R~~~---~~~~~d~~kkVy~~--~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 98 -RCIEYSYEVGCV-ISG---SWDKTIKFWDPRNKV---VVGTFDQGKKVYCM--DVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred -EEEEeeccCCeE-EEc---ccCccEEEEeccccc---cccccccCceEEEE--eccCCEEEEeecCceEEEEEcccc
Confidence 112212 3333 332 134567778876511 11101122222222 367888889888889999998754
No 146
>PRK13684 Ycf48-like protein; Provisional
Probab=88.69 E-value=21 Score=33.38 Aligned_cols=172 Identities=12% Similarity=0.070 Sum_probs=87.7
Q ss_pred CcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEE-EECCCCccccccEEcccCCCCCccc
Q 016368 165 SPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKK-WDLKSDREDWKWEKKAQLKDGRFSR 243 (390)
Q Consensus 165 ~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~-yd~~t~~~~~~W~~~~~~~~~~~~r 243 (390)
.+++=+-.-.+|+.+.... .-..+.+....+..|++.|... .++. .|....+ |+.+.......
T Consensus 153 ~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G--------~i~~s~~~gg~t----W~~~~~~~~~~--- 216 (334)
T PRK13684 153 AIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRG--------NFYSTWEPGQTA----WTPHQRNSSRR--- 216 (334)
T ss_pred eEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCc--------eEEEEcCCCCCe----EEEeeCCCccc---
Confidence 3444444456899876433 2233444444444445444432 1111 2344456 99886533222
Q ss_pred cceEEEE-ECCEEEEEcccCCCCceeEEEe-C-CCCCeEecCCCCCCC-CCCceEEEeeCCeEEEEeCCCCcEEEEECCC
Q 016368 244 EAVEAVG-FKGNLCMVNLKGNGAKDGAIYN-V-ELDKWKEMPEGMHAG-WNGPAASTMNEEELYVVNEGKGRLSKYDADH 319 (390)
Q Consensus 244 ~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd-~-~~~~W~~~~~~~~~~-~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~ 319 (390)
..+++. -++.++++| ......+. . .-.+|+.+..+.... .....++...++.++++|. .+.++.-....
T Consensus 217 -l~~i~~~~~g~~~~vg-----~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-~G~v~~S~d~G 289 (334)
T PRK13684 217 -LQSMGFQPDGNLWMLA-----RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG-NGTLLVSKDGG 289 (334)
T ss_pred -ceeeeEcCCCCEEEEe-----cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC-CCeEEEeCCCC
Confidence 244443 477888884 22223352 2 234899765421111 1222333324678887775 45555444445
Q ss_pred CceEEccccc-ccccceeEEEE-CCEEEEEeeCCceEEEEEcC
Q 016368 320 DWWDEVIELA-ELKGAEKITAA-RGRVCAVCENGERIMVVDVL 360 (390)
Q Consensus 320 ~~W~~i~~~p-~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~ 360 (390)
.+|+.+.... .+...+.++.. ++++|++ +....|+.++..
T Consensus 290 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~~ 331 (334)
T PRK13684 290 KTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVGS 331 (334)
T ss_pred CCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecCC
Confidence 7899986322 22234445544 7788887 444477776643
No 147
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.49 E-value=32 Score=35.23 Aligned_cols=186 Identities=12% Similarity=0.145 Sum_probs=98.6
Q ss_pred CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCcc
Q 016368 147 NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDRE 226 (390)
Q Consensus 147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~ 226 (390)
|.-+.+|+. .+..+.+|+-.+.+.---.+-...|.....-.-+|++.+.|+.+. .+-+||..+.-
T Consensus 319 GDWiA~g~~------klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg--------KVKvWn~~Sgf- 383 (893)
T KOG0291|consen 319 GDWIAFGCS------KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG--------KVKVWNTQSGF- 383 (893)
T ss_pred CCEEEEcCC------ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC--------cEEEEeccCce-
Confidence 555555543 356888888666654433332333333323333788988888775 77888887754
Q ss_pred ccccEEcccCCCCCccccceEEEE--ECCEEEEEcccCCCCceeEEEeCCCC-CeEecCCCCCCCCCCceEEEeeCCeEE
Q 016368 227 DWKWEKKAQLKDGRFSREAVEAVG--FKGNLCMVNLKGNGAKDGAIYNVELD-KWKEMPEGMHAGWNGPAASTMNEEELY 303 (390)
Q Consensus 227 ~~~W~~~~~~~~~~~~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~g~ly 303 (390)
.-.- +..... +++++. ..|+..+.. .-..++-.+|+... .++.... |.+....++++...|.|.
T Consensus 384 ---C~vT--FteHts---~Vt~v~f~~~g~~llss---SLDGtVRAwDlkRYrNfRTft~--P~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 384 ---CFVT--FTEHTS---GVTAVQFTARGNVLLSS---SLDGTVRAWDLKRYRNFRTFTS--PEPIQFSCVAVDPSGELV 450 (893)
T ss_pred ---EEEE--eccCCC---ceEEEEEEecCCEEEEe---ecCCeEEeeeecccceeeeecC--CCceeeeEEEEcCCCCEE
Confidence 2111 111111 233332 244444431 01223446776643 3344333 233333344422239999
Q ss_pred EEeCCCC-cEEEEECCCCceEEccccccccccee--EEEECCEEEEEeeCCceEEEEEcCCC
Q 016368 304 VVNEGKG-RLSKYDADHDWWDEVIELAELKGAEK--ITAARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 304 v~gg~~~-~v~~yd~~~~~W~~i~~~p~~r~~~~--~~~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
+.|+.+. .|++|+.+|++-..+-. .+-+... +....+.+.+-|+=++.|-+||+...
T Consensus 451 ~AG~~d~F~IfvWS~qTGqllDiLs--GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 451 CAGAQDSFEIFVWSVQTGQLLDILS--GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred EeeccceEEEEEEEeecCeeeehhc--CCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 9998776 89999999887655532 2212111 22234445554455678888888665
No 148
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=88.38 E-value=11 Score=36.24 Aligned_cols=93 Identities=13% Similarity=0.164 Sum_probs=51.1
Q ss_pred CceeEEEeCCCCCeEecCCCCCCCCCCceEEE-eeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccc-eeEEEE-C
Q 016368 265 AKDGAIYNVELDKWKEMPEGMHAGWNGPAAST-MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGA-EKITAA-R 341 (390)
Q Consensus 265 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~-~~~~~~-~ 341 (390)
...+..+|++|++=..- +.....-..+-. .-+.++|++||.++.|..||..+++ .+.+.....+. -.+..+ +
T Consensus 279 D~~lKlwDtETG~~~~~---f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSR---FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVDE 353 (503)
T ss_pred ceeeeeeccccceEEEE---EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeEEccC
Confidence 34455788887754322 111111111111 1344999999999999999998876 22222222221 122222 6
Q ss_pred CEEEEEeeCCceEEEEEcCCC
Q 016368 342 GRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 342 g~l~i~g~~~~~v~~~d~~~~ 362 (390)
|+-+|-..+..++.+||...+
T Consensus 354 g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred CceEeeeccCccEEEEEcCCC
Confidence 666776666667777776553
No 149
>PRK01742 tolB translocation protein TolB; Provisional
Probab=87.99 E-value=27 Score=33.85 Aligned_cols=164 Identities=9% Similarity=0.029 Sum_probs=78.1
Q ss_pred eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368 100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG 179 (390)
Q Consensus 100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~ 179 (390)
..++.+|..+++-..+...+. .... ....-++..+++.....+ .-++|.+|..+++.+.+
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g-~~~~---------------~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRG-HNGA---------------PAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQL 287 (429)
T ss_pred cEEEEEeCCCCceEEEecCCC-ccCc---------------eeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEee
Confidence 457778887766555544332 1110 122234444444332111 13588899988876665
Q ss_pred CCCCCCCcceEEEEECCE-EEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCE-EEE
Q 016368 180 PQLSIPRRWCAMGSVGGV-VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGN-LCM 257 (390)
Q Consensus 180 ~~~~~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~-lyv 257 (390)
...... .....-.-+++ |++.+...+ ...++.++..+.. -+.+... . . .....-+|+ +++
T Consensus 288 t~~~~~-~~~~~wSpDG~~i~f~s~~~g------~~~I~~~~~~~~~----~~~l~~~--~-~----~~~~SpDG~~ia~ 349 (429)
T PRK01742 288 TSGAGN-NTEPSWSPDGQSILFTSDRSG------SPQVYRMSASGGG----ASLVGGR--G-Y----SAQISADGKTLVM 349 (429)
T ss_pred ccCCCC-cCCEEECCCCCEEEEEECCCC------CceEEEEECCCCC----eEEecCC--C-C----CccCCCCCCEEEE
Confidence 432211 11111122454 554433222 2366666666554 2333111 0 1 111223444 444
Q ss_pred EcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC
Q 016368 258 VNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG 310 (390)
Q Consensus 258 ~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~ 310 (390)
.+ ......+|+.++++..+.... ....+.. . .+|++++++..++
T Consensus 350 ~~-----~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~-s-PdG~~i~~~s~~g 393 (429)
T PRK01742 350 IN-----GDNVVKQDLTSGSTEVLSSTF--LDESPSI-S-PNGIMIIYSSTQG 393 (429)
T ss_pred Ec-----CCCEEEEECCCCCeEEecCCC--CCCCceE-C-CCCCEEEEEEcCC
Confidence 42 244667899988887665421 1122222 2 7888777776554
No 150
>PRK02889 tolB translocation protein TolB; Provisional
Probab=87.83 E-value=28 Score=33.78 Aligned_cols=180 Identities=13% Similarity=0.058 Sum_probs=83.4
Q ss_pred CCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368 163 LASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS 242 (390)
Q Consensus 163 ~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~ 242 (390)
...++++|......+.+......-.... ..-+++.+++..... ....++++|..++. =+.+...+...
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~-wSPDG~~la~~s~~~-----~~~~I~~~dl~~g~----~~~l~~~~g~~-- 242 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPA-WSPDGTKLAYVSFES-----KKPVVYVHDLATGR----RRVVANFKGSN-- 242 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccce-EcCCCCEEEEEEccC-----CCcEEEEEECCCCC----EEEeecCCCCc--
Confidence 3568888875443333322111111111 112444333333221 23468999998876 44444333211
Q ss_pred ccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe-EEEEeCCCC--cEEEEECC
Q 016368 243 REAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE-LYVVNEGKG--RLSKYDAD 318 (390)
Q Consensus 243 r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~-lyv~gg~~~--~v~~yd~~ 318 (390)
......-+|+ +++.. ...+....+.+|..++..+.+.. -......+. .. .+|+ |++.....+ .++.+|..
T Consensus 243 --~~~~~SPDG~~la~~~-~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~-wS-pDG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 243 --SAPAWSPDGRTLAVAL-SRDGNSQIYTVNADGSGLRRLTQ-SSGIDTEPF-FS-PDGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred --cceEECCCCCEEEEEE-ccCCCceEEEEECCCCCcEECCC-CCCCCcCeE-Ec-CCCCEEEEEecCCCCcEEEEEECC
Confidence 1222223554 44331 12233556778887776666544 111111222 22 5665 444332222 78888887
Q ss_pred CCceEEcccccccccceeEEE-ECC-EEEEEeeCC--ceEEEEEcCCC
Q 016368 319 HDWWDEVIELAELKGAEKITA-ARG-RVCAVCENG--ERIMVVDVLAS 362 (390)
Q Consensus 319 ~~~W~~i~~~p~~r~~~~~~~-~~g-~l~i~g~~~--~~v~~~d~~~~ 362 (390)
+...+.+.... ........ -+| .|+.....+ ..++++|+.+.
T Consensus 317 ~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 317 GGAAQRVTFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCceEEEecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 77766654211 11112222 244 454443222 36888887664
No 151
>PRK10115 protease 2; Provisional
Probab=87.47 E-value=39 Score=35.11 Aligned_cols=185 Identities=7% Similarity=-0.056 Sum_probs=92.5
Q ss_pred CCCCcEEEeCCCCcee--cCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEEC--CCCccccccEEcccC
Q 016368 162 ALASPLAFNPQSNTWF--FGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDL--KSDREDWKWEKKAQL 236 (390)
Q Consensus 162 ~~~~~~~~dp~t~~W~--~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~--~t~~~~~~W~~~~~~ 236 (390)
...++++++..|..-. .+-.-+........... +++-.++..... ..+.++.|+. .+.. |..+-..
T Consensus 197 ~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~~----~~~~~~~ 267 (686)
T PRK10115 197 LPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADAE----PFVFLPR 267 (686)
T ss_pred CCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCCC----ceEEEEC
Confidence 3478999999888332 22111111222222223 444333433332 3356788884 2344 4433333
Q ss_pred CCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCC-CCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC--cEE
Q 016368 237 KDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVE-LDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG--RLS 313 (390)
Q Consensus 237 ~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~--~v~ 313 (390)
+... .+.....++.+|+..-.+.........++. +++|+.+-+ ......-..+.. .++.|++....++ .++
T Consensus 268 ~~~~----~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~-~~~~~~i~~~~~-~~~~l~~~~~~~g~~~l~ 341 (686)
T PRK10115 268 RKDH----EYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIP-PRENIMLEGFTL-FTDWLVVEERQRGLTSLR 341 (686)
T ss_pred CCCC----EEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEEC-CCCCCEEEEEEE-ECCEEEEEEEeCCEEEEE
Confidence 3221 244445578899885222222334556665 578988766 222222234444 6788888776555 778
Q ss_pred EEECCCCceEEcccccccccceeEEE---E-CCEEEEEeeC---CceEEEEEcCCC
Q 016368 314 KYDADHDWWDEVIELAELKGAEKITA---A-RGRVCAVCEN---GERIMVVDVLAS 362 (390)
Q Consensus 314 ~yd~~~~~W~~i~~~p~~r~~~~~~~---~-~g~l~i~g~~---~~~v~~~d~~~~ 362 (390)
++|..+.....+. ++.+.....+.. . ++.+++.-.. -..++.+|+.+.
T Consensus 342 ~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 342 QINRKTREVIGIA-FDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred EEcCCCCceEEec-CCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 8887655555443 111211111111 1 2445543322 348899998775
No 152
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.43 E-value=19 Score=31.48 Aligned_cols=181 Identities=12% Similarity=0.079 Sum_probs=99.2
Q ss_pred CCCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCe-EEEEEeecCCCCCCCCCcEEEeCCCC
Q 016368 96 FNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNN-LVLIAATTPHFLPALASPLAFNPQSN 174 (390)
Q Consensus 96 ~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gG~~~~~~~~~~~~~~~dp~t~ 174 (390)
+.+...++++|..|++-.+ ++.+ |.+. ...+..+.. -+++.|. .-..+-.||..++
T Consensus 77 ~GgDk~v~vwDV~TGkv~R--------r~rg---H~aq------VNtV~fNeesSVv~Sgs------fD~s~r~wDCRS~ 133 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVDR--------RFRG---HLAQ------VNTVRFNEESSVVASGS------FDSSVRLWDCRSR 133 (307)
T ss_pred CCCCceEEEEEcccCeeee--------eccc---ccce------eeEEEecCcceEEEecc------ccceeEEEEcccC
Confidence 3455678999998875332 1110 1111 145555543 3333332 2246788999999
Q ss_pred ceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCE
Q 016368 175 TWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGN 254 (390)
Q Consensus 175 ~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~ 254 (390)
+.+.+.-+...+..-..+.+.+...|.|..++ .+..||+..++ .....+..+.- .....-++.
T Consensus 134 s~ePiQildea~D~V~Si~v~~heIvaGS~DG--------tvRtydiR~G~-----l~sDy~g~pit----~vs~s~d~n 196 (307)
T KOG0316|consen 134 SFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG--------TVRTYDIRKGT-----LSSDYFGHPIT----SVSFSKDGN 196 (307)
T ss_pred CCCccchhhhhcCceeEEEecccEEEeeccCC--------cEEEEEeecce-----eehhhcCCcce----eEEecCCCC
Confidence 99888888888888888889999888887765 67889998877 23333444321 222223444
Q ss_pred EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeC-CCCcEEEEECCCC
Q 016368 255 LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNE-GKGRLSKYDADHD 320 (390)
Q Consensus 255 lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg-~~~~v~~yd~~~~ 320 (390)
..+.| .-.......|-++++--..-.+.....+..-.+. .+..-.|++| .+|.++.||....
T Consensus 197 c~La~---~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l-~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 197 CSLAS---SLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL-NQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred EEEEe---eccceeeecccchhHHHHHhcccccceeeeeeee-cccceeEEeccCCceEEEEEeccc
Confidence 44442 1112233455555432111110111111122222 3444455555 5679999998754
No 153
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.75 E-value=33 Score=33.58 Aligned_cols=146 Identities=15% Similarity=0.168 Sum_probs=79.0
Q ss_pred CCEEEEEeccCCCCCCCccCeEEEEECCCC-ccccccEEcccCCCCCccccceEEE-EECCEEEEEcccCCCCceeEEEe
Q 016368 195 GGVVYVASGVGAHYRGDVARSMKKWDLKSD-REDWKWEKKAQLKDGRFSREAVEAV-GFKGNLCMVNLKGNGAKDGAIYN 272 (390)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~-~~~~~W~~~~~~~~~~~~r~~~~~~-~~~g~lyv~gg~g~~~~~~~~yd 272 (390)
+++ |+++|..+ ..+.+||.+.+ .. -+.+....... ++++ .-.|.+++.| .+...+.++|
T Consensus 214 d~~-~l~s~s~D-------~tiriwd~~~~~~~---~~~l~gH~~~v-----~~~~f~p~g~~i~Sg---s~D~tvriWd 274 (456)
T KOG0266|consen 214 DGS-YLLSGSDD-------KTLRIWDLKDDGRN---LKTLKGHSTYV-----TSVAFSPDGNLLVSG---SDDGTVRIWD 274 (456)
T ss_pred CCc-EEEEecCC-------ceEEEeeccCCCeE---EEEecCCCCce-----EEEEecCCCCEEEEe---cCCCcEEEEe
Confidence 455 55555544 37889999544 20 22333333222 3333 3455677773 2345677899
Q ss_pred CCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceE---EcccccccccceeEEEE--CCEEEEE
Q 016368 273 VELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWD---EVIELAELKGAEKITAA--RGRVCAV 347 (390)
Q Consensus 273 ~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~---~i~~~p~~r~~~~~~~~--~g~l~i~ 347 (390)
..+.+-...-. -.... ..++....+|.+++.+..++.+.+||..+..-. .+....... ....+.. +++..+.
T Consensus 275 ~~~~~~~~~l~-~hs~~-is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 275 VRTGECVRKLK-GHSDG-ISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLS 351 (456)
T ss_pred ccCCeEEEeee-ccCCc-eEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEE
Confidence 98854333221 11111 112222368888888888999999999987632 222221221 2233333 5555555
Q ss_pred eeCCceEEEEEcCCC
Q 016368 348 CENGERIMVVDVLAS 362 (390)
Q Consensus 348 g~~~~~v~~~d~~~~ 362 (390)
+..+..+..||+...
T Consensus 352 ~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSG 366 (456)
T ss_pred ecCCCeEEEEEccCC
Confidence 455668888888764
No 154
>PRK03629 tolB translocation protein TolB; Provisional
Probab=86.50 E-value=33 Score=33.29 Aligned_cols=178 Identities=10% Similarity=0.002 Sum_probs=89.0
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS 242 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~ 242 (390)
..++++|..+++-+.+...+..-... ...-+| +|++.....+ ...++++|..++. .+.+.......
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~-~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~----~~~lt~~~~~~-- 289 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAP-AFSPDGSKLAFALSKTG------SLNLYVMDLASGQ----IRQVTDGRSNN-- 289 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCe-EECCCCCEEEEEEcCCC------CcEEEEEECCCCC----EEEccCCCCCc--
Confidence 57899999888766665443221111 111244 4655433221 2368999999888 77665433211
Q ss_pred ccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEE-eCCC--CcEEEEECC
Q 016368 243 REAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVV-NEGK--GRLSKYDAD 318 (390)
Q Consensus 243 r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~-gg~~--~~v~~yd~~ 318 (390)
......-+|+ |+... ...+...++.+|+.+..-+.+.. . .......... .+|+.+++ .... ..++.+|.+
T Consensus 290 --~~~~wSPDG~~I~f~s-~~~g~~~Iy~~d~~~g~~~~lt~-~-~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 290 --TEPTWFPDSQNLAYTS-DQAGRPQVYKVNINGGAPQRITW-E-GSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred --CceEECCCCCEEEEEe-CCCCCceEEEEECCCCCeEEeec-C-CCCccCEEEC-CCCCEEEEEEccCCCceEEEEECC
Confidence 1222223555 43332 11123356677887776665533 1 1111112222 55654444 4332 278999999
Q ss_pred CCceEEcccccccccceeEEEECCEEEEEeeC-C--ceEEEEEcCCC
Q 016368 319 HDWWDEVIELAELKGAEKITAARGRVCAVCEN-G--ERIMVVDVLAS 362 (390)
Q Consensus 319 ~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~-~--~~v~~~d~~~~ 362 (390)
++.++.+.... ........-+|+..++... + ..++++++...
T Consensus 364 ~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 364 TGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred CCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 99888776321 1111122245654444432 2 24566676543
No 155
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=86.47 E-value=23 Score=31.53 Aligned_cols=160 Identities=10% Similarity=0.051 Sum_probs=84.4
Q ss_pred eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCcee---cCCCCCC---------CCcceEEEEECCEEEEEeccCCCC
Q 016368 141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWF---FGPQLSI---------PRRWCAMGSVGGVVYVASGVGAHY 208 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~---~~~~~~~---------~r~~~~~~~~~~~lyv~GG~~~~~ 208 (390)
..++.++.+|+-- ...+.+.+||..+++-. .+|.... +-...-.++-+.-|+|+=...+.
T Consensus 73 G~vVYngslYY~~-------~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~- 144 (250)
T PF02191_consen 73 GHVVYNGSLYYNK-------YNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN- 144 (250)
T ss_pred CeEEECCcEEEEe-------cCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC-
Confidence 4555666666654 24578999999998654 4543211 11223444445556666443321
Q ss_pred CCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCC-CceeEEEeCCCCCeEecCCCCCC
Q 016368 209 RGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNG-AKDGAIYNVELDKWKEMPEGMHA 287 (390)
Q Consensus 209 ~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~-~~~~~~yd~~~~~W~~~~~~~~~ 287 (390)
...--+-..|+.+-...-.|..- .+... ...+.++-|.||++...... ..-..+||+.+++=..+.-.++.
T Consensus 145 --~g~ivvskld~~tL~v~~tw~T~--~~k~~----~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~ 216 (250)
T PF02191_consen 145 --NGNIVVSKLDPETLSVEQTWNTS--YPKRS----AGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPN 216 (250)
T ss_pred --CCcEEEEeeCcccCceEEEEEec--cCchh----hcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeecc
Confidence 11123344455443211116532 22221 24466678999998422211 22235899998876654443434
Q ss_pred CCCCceEEE--eeCCeEEEEeCCCCcEEEEECC
Q 016368 288 GWNGPAAST--MNEEELYVVNEGKGRLSKYDAD 318 (390)
Q Consensus 288 ~~~~~~~~~--~~~g~lyv~gg~~~~v~~yd~~ 318 (390)
.....++.. ..+.+||+.. +|.+..|+..
T Consensus 217 ~~~~~~~l~YNP~dk~LY~wd--~G~~v~Y~v~ 247 (250)
T PF02191_consen 217 PYGNISMLSYNPRDKKLYAWD--NGYQVTYDVR 247 (250)
T ss_pred ccCceEeeeECCCCCeEEEEE--CCeEEEEEEE
Confidence 433444443 4568888886 3666777653
No 156
>PTZ00421 coronin; Provisional
Probab=86.38 E-value=37 Score=33.70 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=68.1
Q ss_pred CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCC
Q 016368 196 GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVE 274 (390)
Q Consensus 196 ~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~ 274 (390)
+.+++.||.+. .+.+||..+... -..+..-... -.+++. .+|.+.+.|+ ....+.+||+.
T Consensus 138 ~~iLaSgs~Dg--------tVrIWDl~tg~~---~~~l~~h~~~-----V~sla~spdG~lLatgs---~Dg~IrIwD~r 198 (493)
T PTZ00421 138 MNVLASAGADM--------VVNVWDVERGKA---VEVIKCHSDQ-----ITSLEWNLDGSLLCTTS---KDKKLNIIDPR 198 (493)
T ss_pred CCEEEEEeCCC--------EEEEEECCCCeE---EEEEcCCCCc-----eEEEEEECCCCEEEEec---CCCEEEEEECC
Confidence 35777777654 788999987651 1122211111 122222 3666666631 23456789998
Q ss_pred CCCeE-ecCCCCCCCCCCceEEEeeC-CeEEEEeC---CCCcEEEEECCCCc--eEEcccccccccceeEEEE--CCEEE
Q 016368 275 LDKWK-EMPEGMHAGWNGPAASTMNE-EELYVVNE---GKGRLSKYDADHDW--WDEVIELAELKGAEKITAA--RGRVC 345 (390)
Q Consensus 275 ~~~W~-~~~~~~~~~~~~~~~~~~~~-g~lyv~gg---~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~--~g~l~ 345 (390)
+.+-. .+.. ........++...+ +.|+..|. .++.+..||..+.. .... .+.. .....+..+ ++.++
T Consensus 199 sg~~v~tl~~--H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~-~~d~-~~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 199 DGTIVSSVEA--HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV-DLDQ-SSALFIPFFDEDTNLL 274 (493)
T ss_pred CCcEEEEEec--CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe-ccCC-CCceEEEEEcCCCCEE
Confidence 76421 2211 11111111222133 44444442 24689999986432 1111 1111 111122222 45555
Q ss_pred EEee-CCceEEEEEcCCC
Q 016368 346 AVCE-NGERIMVVDVLAS 362 (390)
Q Consensus 346 i~g~-~~~~v~~~d~~~~ 362 (390)
++|+ ++..|.+||+.+.
T Consensus 275 ~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 275 YIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEEEeCCCeEEEEEeeCC
Confidence 5444 5668889998765
No 157
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=86.32 E-value=28 Score=34.92 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=77.6
Q ss_pred cEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCC--CceEEE-eeCCeEEEEe
Q 016368 230 WEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWN--GPAAST-MNEEELYVVN 306 (390)
Q Consensus 230 W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~--~~~~~~-~~~g~lyv~g 306 (390)
=+.+..++.....-....-..-+++++++. ......+.++.++.+.+++....+.+.. -..+++ ..++.|-+++
T Consensus 418 ~~~v~~~~~~~~~a~~i~ftid~~k~~~~s---~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~ 494 (691)
T KOG2048|consen 418 VINVDDVPLALLDASAISFTIDKNKLFLVS---KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS 494 (691)
T ss_pred EEEeccchhhhccceeeEEEecCceEEEEe---cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe
Confidence 345666665543100111222366777772 2445677899998888887663333221 112222 3455666665
Q ss_pred CCCCcEEEEECCCCceEEcccccccccceeEE---EECCEEEEEeeCCceEEEEEcCCCCCcceE
Q 016368 307 EGKGRLSKYDADHDWWDEVIELAELKGAEKIT---AARGRVCAVCENGERIMVVDVLASPARAWL 368 (390)
Q Consensus 307 g~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~---~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~ 368 (390)
..+.+++||.++.+-+.+...+. ....++. ...+.|.|. ..+++++.||+....-.+|.
T Consensus 495 -t~g~I~v~nl~~~~~~~l~~rln-~~vTa~~~~~~~~~~lvva-ts~nQv~efdi~~~~l~~ws 556 (691)
T KOG2048|consen 495 -TRGQIFVYNLETLESHLLKVRLN-IDVTAAAFSPFVRNRLVVA-TSNNQVFEFDIEARNLTRWS 556 (691)
T ss_pred -ccceEEEEEcccceeecchhccC-cceeeeeccccccCcEEEE-ecCCeEEEEecchhhhhhhh
Confidence 67799999999988777663222 2212222 235677777 67789999999554444676
No 158
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=86.29 E-value=33 Score=36.56 Aligned_cols=133 Identities=10% Similarity=-0.010 Sum_probs=76.5
Q ss_pred CeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCce
Q 016368 214 RSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPA 293 (390)
Q Consensus 214 ~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~ 293 (390)
..++.|+...+..+ -+.+.....+-. -++++-+.|.+++- .+....+||+..++--.....-..+..-..
T Consensus 912 g~~ytyk~~~~g~~--lellh~T~~~~~---v~Ai~~f~~~~Lag-----vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~ 981 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDK--LELLHKTEIPGP---VGAICPFQGRVLAG-----VGRFLRLYDLGKKKLLRKCELKFIPNRISS 981 (1205)
T ss_pred CceEEEEEEecCce--eeeeeccCCCcc---ceEEeccCCEEEEe-----cccEEEEeeCChHHHHhhhhhccCceEEEE
Confidence 34777877555411 333433322211 26677778866553 566778999987754333321111222223
Q ss_pred EEEeeCCeEEEEeCCCC-cEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEE
Q 016368 294 ASTMNEEELYVVNEGKG-RLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVV 357 (390)
Q Consensus 294 ~~~~~~g~lyv~gg~~~-~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~ 357 (390)
..+ ...+|+|-.-.++ ..++|+++.++...+..-|.+|....+..++..=.+.+..-+++++.
T Consensus 982 iqt-~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 982 IQT-YGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred Eee-cceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEE
Confidence 333 5566666555554 78899999999999998888888777766643333332333344444
No 159
>PRK02889 tolB translocation protein TolB; Provisional
Probab=85.91 E-value=35 Score=33.05 Aligned_cols=187 Identities=10% Similarity=-0.011 Sum_probs=90.0
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEE-ECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGS-VGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF 241 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~-~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~ 241 (390)
..++++|..+++=+.+...+... .+... -++ +|++....+ ....++.+|..++. .+.+..-... .
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~--~~~~~SPDG~~la~~~~~~------g~~~Iy~~d~~~~~----~~~lt~~~~~-~ 286 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSN--SAPAWSPDGRTLAVALSRD------GNSQIYTVNADGSG----LRRLTQSSGI-D 286 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCc--cceEECCCCCEEEEEEccC------CCceEEEEECCCCC----cEECCCCCCC-C
Confidence 46999999888665554333111 11122 244 455443322 23578888888777 6665432211 1
Q ss_pred cccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeC-CCC--cEEEEEC
Q 016368 242 SREAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNE-GKG--RLSKYDA 317 (390)
Q Consensus 242 ~r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg-~~~--~v~~yd~ 317 (390)
......-+|+ +++.+ ...+....+.+|..++..+.+.. . +..........+|+..++.. ..+ .++++|.
T Consensus 287 ---~~~~wSpDG~~l~f~s-~~~g~~~Iy~~~~~~g~~~~lt~-~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 287 ---TEPFFSPDGRSIYFTS-DRGGAPQIYRMPASGGAAQRVTF-T--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred ---cCeEEcCCCCEEEEEe-cCCCCcEEEEEECCCCceEEEec-C--CCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence 1112233555 44442 11123455667777776665543 1 11111222224555444433 222 6899999
Q ss_pred CCCceEEcccccccccceeEEEECCEEEEEee-C--CceEEEEEcCCCCCcceEecCCCC
Q 016368 318 DHDWWDEVIELAELKGAEKITAARGRVCAVCE-N--GERIMVVDVLASPARAWLVDPPRG 374 (390)
Q Consensus 318 ~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~-~--~~~v~~~d~~~~~~~~W~~~~p~g 374 (390)
.+...+.+..-. ....-...-+|+..++.. . ...+++.++... ....+..|.|
T Consensus 360 ~~g~~~~lt~~~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~--~~~~l~~~~g 415 (427)
T PRK02889 360 ATGQVTALTDTT--RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR--IKQRLSVQGG 415 (427)
T ss_pred CCCCeEEccCCC--CccCceECCCCCEEEEEEecCCCEEEEEEECCCC--ceEEeecCCC
Confidence 988877765321 111112222555444432 2 224667777433 2334444555
No 160
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=85.52 E-value=10 Score=35.21 Aligned_cols=193 Identities=20% Similarity=0.229 Sum_probs=92.3
Q ss_pred CCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCce
Q 016368 97 NSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTW 176 (390)
Q Consensus 97 ~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W 176 (390)
++..++.+-|...++...--+.|. +.+. |..+..+|.+.+-+|.+..+.=...+. ......-+|++...-.
T Consensus 115 TPa~SVtVVDl~~~kvv~ei~~PG---C~~i-----yP~~~~~F~~lC~DGsl~~v~Ld~~Gk-~~~~~t~~F~~~~dp~ 185 (342)
T PF06433_consen 115 TPATSVTVVDLAAKKVVGEIDTPG---CWLI-----YPSGNRGFSMLCGDGSLLTVTLDADGK-EAQKSTKVFDPDDDPL 185 (342)
T ss_dssp SSSEEEEEEETTTTEEEEEEEGTS---EEEE-----EEEETTEEEEEETTSCEEEEEETSTSS-EEEEEEEESSTTTS-B
T ss_pred CCCCeEEEEECCCCceeeeecCCC---EEEE-----EecCCCceEEEecCCceEEEEECCCCC-EeEeeccccCCCCccc
Confidence 567788999999887755333333 2211 122223346666666666654322221 1222334666655433
Q ss_pred ecCCCCCCCCcceEEEEECCEEEEE--eccCCCCCCCccCeEEEEECCC-----CccccccEEcccCCCCCccccceEEE
Q 016368 177 FFGPQLSIPRRWCAMGSVGGVVYVA--SGVGAHYRGDVARSMKKWDLKS-----DREDWKWEKKAQLKDGRFSREAVEAV 249 (390)
Q Consensus 177 ~~~~~~~~~r~~~~~~~~~~~lyv~--GG~~~~~~~~~~~~~~~yd~~t-----~~~~~~W~~~~~~~~~~~~r~~~~~~ 249 (390)
..-+.....-...-...++|+||-+ +|.. ..-...++..+ .. |+.-.- ...+
T Consensus 186 f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-------~~~~~~~~~~t~~e~~~~----WrPGG~----------Q~~A 244 (342)
T PF06433_consen 186 FEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-------AKFGKPWSLLTDAEKADG----WRPGGW----------QLIA 244 (342)
T ss_dssp -S--EEETTTTEEEEEBTTSEEEEEEETTSS-------EEEEEEEESS-HHHHHTT----EEE-SS----------S-EE
T ss_pred ccccceECCCCeEEEEecCCEEEEEeccCCc-------ccccCcccccCccccccC----cCCcce----------eeee
Confidence 3222221111233446678888884 3322 11223333322 23 543221 1122
Q ss_pred E--ECCEEEEEcccCC------CCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC--eEEEEeCCCCcEEEEECCC
Q 016368 250 G--FKGNLCMVNLKGN------GAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE--ELYVVNEGKGRLSKYDADH 319 (390)
Q Consensus 250 ~--~~g~lyv~gg~g~------~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g--~lyv~gg~~~~v~~yd~~~ 319 (390)
. -.++||++--+|. .+..+++||+++.+=...-+ ...+ .-++.+.-++ .||.+...++.+.+||..+
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~-l~~~--~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP-LEHP--IDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE-EEEE--ESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe-CCCc--cceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 2 4778998753321 23457899999885322111 1111 1134432444 4555656677999999998
Q ss_pred Cce
Q 016368 320 DWW 322 (390)
Q Consensus 320 ~~W 322 (390)
.+-
T Consensus 322 Gk~ 324 (342)
T PF06433_consen 322 GKL 324 (342)
T ss_dssp --E
T ss_pred CcE
Confidence 743
No 161
>PRK04043 tolB translocation protein TolB; Provisional
Probab=84.86 E-value=39 Score=32.69 Aligned_cols=181 Identities=8% Similarity=-0.044 Sum_probs=96.8
Q ss_pred ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCe-EEEEEeecCCCCCCCCCcEEEeCCCCcee
Q 016368 99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNN-LVLIAATTPHFLPALASPLAFNPQSNTWF 177 (390)
Q Consensus 99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gG~~~~~~~~~~~~~~~dp~t~~W~ 177 (390)
...++++|+.+++-..+...+. .... ....-++. +++.... . ...+++++|..+++++
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g-~~~~---------------~~~SPDG~~la~~~~~-~----g~~~Iy~~dl~~g~~~ 270 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQG-MLVV---------------SDVSKDGSKLLLTMAP-K----GQPDIYLYDTNTKTLT 270 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCC-cEEe---------------eEECCCCCEEEEEEcc-C----CCcEEEEEECCCCcEE
Confidence 3478999998887777765433 1100 12223443 4443322 1 2358999999999988
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEE
Q 016368 178 FGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCM 257 (390)
Q Consensus 178 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv 257 (390)
.+...+..-......--+.+||+..... ....++++|..++. .+++..-.. . .. ...-+|+..+
T Consensus 271 ~LT~~~~~d~~p~~SPDG~~I~F~Sdr~------g~~~Iy~~dl~~g~----~~rlt~~g~--~---~~-~~SPDG~~Ia 334 (419)
T PRK04043 271 QITNYPGIDVNGNFVEDDKRIVFVSDRL------GYPNIFMKKLNSGS----VEQVVFHGK--N---NS-SVSTYKNYIV 334 (419)
T ss_pred EcccCCCccCccEECCCCCEEEEEECCC------CCceEEEEECCCCC----eEeCccCCC--c---Cc-eECCCCCEEE
Confidence 8765432111111111144677765432 23589999999888 666543211 1 12 2333555333
Q ss_pred EcccCC------CCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC-C--cEEEEECCCC
Q 016368 258 VNLKGN------GAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK-G--RLSKYDADHD 320 (390)
Q Consensus 258 ~gg~g~------~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~-~--~v~~yd~~~~ 320 (390)
+..... +.....++|++++.++.+... . ....+... .||+..++.... + .++.++...+
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~-~~~~p~~S--PDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-G-VNQFPRFS--SDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-C-CcCCeEEC--CCCCEEEEEEccCCcEEEEEEecCCC
Confidence 322211 224667889999999888762 1 11122322 677655443322 2 5677776654
No 162
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.68 E-value=31 Score=31.44 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=26.1
Q ss_pred CCceecCCCCCCCCc--ceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCc
Q 016368 173 SNTWFFGPQLSIPRR--WCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDR 225 (390)
Q Consensus 173 t~~W~~~~~~~~~r~--~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~ 225 (390)
..+|+..|-...+-. .-+++++++.-.+-||.++ .+.+||..++.
T Consensus 28 s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDe--------tI~IYDm~k~~ 74 (362)
T KOG0294|consen 28 SVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDE--------TIHIYDMRKRK 74 (362)
T ss_pred ccceeeeccccccccccceeEEEecceeEeccCCCC--------cEEEEeccchh
Confidence 345665555443322 2344455665555555444 78999998876
No 163
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=84.65 E-value=11 Score=33.97 Aligned_cols=118 Identities=11% Similarity=0.091 Sum_probs=66.5
Q ss_pred EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe---EEEEeCCCCcEEEEECCCCceEEcccccc
Q 016368 254 NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE---LYVVNEGKGRLSKYDADHDWWDEVIELAE 330 (390)
Q Consensus 254 ~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~---lyv~gg~~~~v~~yd~~~~~W~~i~~~p~ 330 (390)
++|.-+ ..+....+|+.+++=..+... .+ ..-.+-. +.+. +.+-|.++..+..||+... ..+..+..
T Consensus 86 kVf~g~----~Dk~~k~wDL~S~Q~~~v~~H--d~-pvkt~~w-v~~~~~~cl~TGSWDKTlKfWD~R~~--~pv~t~~L 155 (347)
T KOG0647|consen 86 KVFSGG----CDKQAKLWDLASGQVSQVAAH--DA-PVKTCHW-VPGMNYQCLVTGSWDKTLKFWDTRSS--NPVATLQL 155 (347)
T ss_pred eEEeec----cCCceEEEEccCCCeeeeeec--cc-ceeEEEE-ecCCCcceeEecccccceeecccCCC--Ceeeeeec
Confidence 555543 345677999999977776651 11 1112222 3333 4566778888888888743 23333333
Q ss_pred cccceeEEEECCEEEEEeeCCceEEEEEcCCCCCcceEecCCCCeeEEEEEe
Q 016368 331 LKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHV 382 (390)
Q Consensus 331 ~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~~~p~g~~~~~~~~ 382 (390)
+-..+++-+.. -+.+++-.+..|.+|++...+.+.-.+..|..++.=+|++
T Consensus 156 PeRvYa~Dv~~-pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~ 206 (347)
T KOG0647|consen 156 PERVYAADVLY-PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVAC 206 (347)
T ss_pred cceeeehhccC-ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEE
Confidence 33334444444 3555556777999999988765444444555554433333
No 164
>PRK04043 tolB translocation protein TolB; Provisional
Probab=83.93 E-value=43 Score=32.41 Aligned_cols=176 Identities=7% Similarity=-0.043 Sum_probs=95.3
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS 242 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~ 242 (390)
.+++++|..+++=+.+...+.. .......-+| +|.+.-... ....++++|..++. ++.+...+....
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~------g~~~Iy~~dl~~g~----~~~LT~~~~~d~- 280 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPK------GQPDIYLYDTNTKT----LTQITNYPGIDV- 280 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccC------CCcEEEEEECCCCc----EEEcccCCCccC-
Confidence 3788888888766665442211 1111122244 555443322 23589999999998 888865443111
Q ss_pred ccceEEEEECC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEE-EeCCC--------CcE
Q 016368 243 REAVEAVGFKG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYV-VNEGK--------GRL 312 (390)
Q Consensus 243 r~~~~~~~~~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv-~gg~~--------~~v 312 (390)
.....-+| +||+.... .+...+.++|..+++.+.+.. . +.... ... .+|+..+ ..... ..+
T Consensus 281 ---~p~~SPDG~~I~F~Sdr-~g~~~Iy~~dl~~g~~~rlt~-~--g~~~~-~~S-PDG~~Ia~~~~~~~~~~~~~~~~I 351 (419)
T PRK04043 281 ---NGNFVEDDKRIVFVSDR-LGYPNIFMKKLNSGSVEQVVF-H--GKNNS-SVS-TYKNYIVYSSRETNNEFGKNTFNL 351 (419)
T ss_pred ---ccEECCCCCEEEEEECC-CCCceEEEEECCCCCeEeCcc-C--CCcCc-eEC-CCCCEEEEEEcCCCcccCCCCcEE
Confidence 11222344 56666422 133567889999888876654 1 21222 222 4555444 33322 378
Q ss_pred EEEECCCCceEEcccccccccceeEEEECCE-EEEEeeC--CceEEEEEcCCC
Q 016368 313 SKYDADHDWWDEVIELAELKGAEKITAARGR-VCAVCEN--GERIMVVDVLAS 362 (390)
Q Consensus 313 ~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~-l~i~g~~--~~~v~~~d~~~~ 362 (390)
+.+|.++..++.+.... ....-...-+|+ |++.... ...++++++...
T Consensus 352 ~v~d~~~g~~~~LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 352 YLISTNSDYIRRLTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEECCCCCeEECCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 99999999998887532 111112223554 4444322 235778887664
No 165
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=83.85 E-value=10 Score=37.36 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=60.4
Q ss_pred CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCC-CCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEc-----
Q 016368 252 KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGW-NGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEV----- 325 (390)
Q Consensus 252 ~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~-~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i----- 325 (390)
+-.||+.| .+..++.++++.++|-..=. ...+. ....+. --..|+.+|+.++.|..||+.+.+=...
T Consensus 145 scDly~~g----sg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in--~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 145 SCDLYLVG----SGSEVYRLNLEQGRFLNPFE-TDSGELNVVSIN--EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred CccEEEee----cCcceEEEEccccccccccc-cccccceeeeec--CccceEEecccCceEEEecchhhhhheeeeccc
Confidence 44588886 56778899999998854222 11111 111222 2345777888899999999987543221
Q ss_pred --cccccccc--ceeEEEE-C-CEEEEEeeCCceEEEEEcCCC
Q 016368 326 --IELAELKG--AEKITAA-R-GRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 326 --~~~p~~r~--~~~~~~~-~-g~l~i~g~~~~~v~~~d~~~~ 362 (390)
...|..-. ..+...+ + |.-+-+|...+.+++||+.+.
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 11221111 1222333 4 344446666779999998775
No 166
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=83.37 E-value=12 Score=33.87 Aligned_cols=107 Identities=11% Similarity=0.138 Sum_probs=60.8
Q ss_pred CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEE--eeCCeEEEEeCCCCcEEEEECCCCceEEccccc
Q 016368 252 KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAAST--MNEEELYVVNEGKGRLSKYDADHDWWDEVIELA 329 (390)
Q Consensus 252 ~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p 329 (390)
.|.+.++| ..-.....||.++-+--.-.. +.....+....+ ...++||+.+..+|.|..||-.++....--.-.
T Consensus 227 sGefllvg---TdHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A 302 (430)
T KOG0640|consen 227 SGEFLLVG---TDHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA 302 (430)
T ss_pred CCceEEEe---cCCCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh
Confidence 55666663 123345689988765443333 333334333333 457999999999999999998877653321111
Q ss_pred ccccc-eeEEEECCEEEEEeeC-CceEEEEEcCCC
Q 016368 330 ELKGA-EKITAARGRVCAVCEN-GERIMVVDVLAS 362 (390)
Q Consensus 330 ~~r~~-~~~~~~~g~l~i~g~~-~~~v~~~d~~~~ 362 (390)
..... +++..-.+.-||+.++ +.-+.+|++.++
T Consensus 303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 11111 2222234555666544 445678888775
No 167
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=82.78 E-value=58 Score=34.26 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=24.7
Q ss_pred eEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC
Q 016368 189 CAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL 236 (390)
Q Consensus 189 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~ 236 (390)
.+-+++++.||+... .+.+..+|..|++. .|+.-...
T Consensus 188 ~TPlvvgg~lYv~t~---------~~~V~ALDa~TGk~--lW~~d~~~ 224 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP---------HNKVIALDAATGKE--KWKFDPKL 224 (764)
T ss_pred cCCEEECCEEEEECC---------CCeEEEEECCCCcE--EEEEcCCC
Confidence 345677999999743 34678888887763 37755443
No 168
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.52 E-value=34 Score=30.16 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=41.5
Q ss_pred eEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCC-CCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCC-ceE
Q 016368 246 VEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPE-GMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHD-WWD 323 (390)
Q Consensus 246 ~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~-~W~ 323 (390)
.+.+.-+|++++. .-+-+.+.|+.-.. .++......+- .+-|.+..++|.++.+..|-+..+ +|.
T Consensus 226 iAS~SqDg~viIw-----------t~~~e~e~wk~tll~~f~~~~w~vSW--S~sGn~LaVs~GdNkvtlwke~~~Gkw~ 292 (299)
T KOG1332|consen 226 IASCSQDGTVIIW-----------TKDEEYEPWKKTLLEEFPDVVWRVSW--SLSGNILAVSGGDNKVTLWKENVDGKWE 292 (299)
T ss_pred eEEecCCCcEEEE-----------EecCccCcccccccccCCcceEEEEE--eccccEEEEecCCcEEEEEEeCCCCcEE
Confidence 3444456666665 33445678876432 13333333333 367888888887887777776654 899
Q ss_pred Eccc
Q 016368 324 EVIE 327 (390)
Q Consensus 324 ~i~~ 327 (390)
++..
T Consensus 293 ~v~~ 296 (299)
T KOG1332|consen 293 EVGE 296 (299)
T ss_pred Eccc
Confidence 9874
No 169
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=82.25 E-value=43 Score=31.76 Aligned_cols=176 Identities=19% Similarity=0.120 Sum_probs=85.0
Q ss_pred CCCcEEEeCCCCce-ecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC
Q 016368 163 LASPLAFNPQSNTW-FFGPQLSIPRRWCAMGSV---GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD 238 (390)
Q Consensus 163 ~~~~~~~dp~t~~W-~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~ 238 (390)
.+.+.+.|..+++- .+++.. ..-|..... +.++|+.+. + ..+-++|+.+.+ .+...+.
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~---~~~h~~~~~s~Dgr~~yv~~r-d--------g~vsviD~~~~~------~v~~i~~ 76 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTG---GAPHAGLKFSPDGRYLYVANR-D--------GTVSVIDLATGK------VVATIKV 76 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-S---TTEEEEEE-TT-SSEEEEEET-T--------SEEEEEETTSSS------EEEEEE-
T ss_pred CCEEEEEECCCCeEEEEEcCC---CCceeEEEecCCCCEEEEEcC-C--------CeEEEEECCccc------EEEEEec
Confidence 36788889888753 333322 122444433 346898752 2 268899999877 3444333
Q ss_pred CCccccceEEE-EECCEEEEEcccCCCCceeEEEeCCCCCe-EecCCC-CC----CCCCCceEEEeeCCeEEEEeCC-CC
Q 016368 239 GRFSREAVEAV-GFKGNLCMVNLKGNGAKDGAIYNVELDKW-KEMPEG-MH----AGWNGPAASTMNEEELYVVNEG-KG 310 (390)
Q Consensus 239 ~~~~r~~~~~~-~~~g~lyv~gg~g~~~~~~~~yd~~~~~W-~~~~~~-~~----~~~~~~~~~~~~~g~lyv~gg~-~~ 310 (390)
... ..+++ .-+|+..+++ +.......++|.++.+= +.++.. .+ .+|. .+++.......|++.-. .+
T Consensus 77 G~~---~~~i~~s~DG~~~~v~--n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv-~aIv~s~~~~~fVv~lkd~~ 150 (369)
T PF02239_consen 77 GGN---PRGIAVSPDGKYVYVA--NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRV-AAIVASPGRPEFVVNLKDTG 150 (369)
T ss_dssp SSE---EEEEEE--TTTEEEEE--EEETTEEEEEETTT--EEEEEE--EE-TTTS---E-EEEEE-SSSSEEEEEETTTT
T ss_pred CCC---cceEEEcCCCCEEEEE--ecCCCceeEeccccccceeecccccccccccCCCc-eeEEecCCCCEEEEEEccCC
Confidence 332 13333 3577755554 22345677899877532 223221 11 1222 12222256676777654 46
Q ss_pred cEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeC-CceEEEEEcCCC
Q 016368 311 RLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCEN-GERIMVVDVLAS 362 (390)
Q Consensus 311 ~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~-~~~v~~~d~~~~ 362 (390)
.+|..|.....=..+..+...+..|....- +++-++++.. .+.+.++|..+.
T Consensus 151 ~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 151 EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred eEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence 899999775432222333333443433333 4555555422 346667776554
No 170
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=82.25 E-value=47 Score=31.64 Aligned_cols=148 Identities=14% Similarity=0.149 Sum_probs=85.1
Q ss_pred CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCC
Q 016368 195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVE 274 (390)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~ 274 (390)
+.++|+..+. .+.+.++|..++.. ...+..-..+. ..+....++++|+..... +...+.++|..
T Consensus 85 ~~~vyv~~~~--------~~~v~vid~~~~~~---~~~~~vG~~P~----~~~~~~~~~~vYV~n~~~-~~~~vsvid~~ 148 (381)
T COG3391 85 GNKVYVTTGD--------SNTVSVIDTATNTV---LGSIPVGLGPV----GLAVDPDGKYVYVANAGN-GNNTVSVIDAA 148 (381)
T ss_pred CCeEEEecCC--------CCeEEEEcCcccce---eeEeeeccCCc----eEEECCCCCEEEEEeccc-CCceEEEEeCC
Confidence 6779998655 34888999777761 33332222111 133333466899983111 34667889998
Q ss_pred CCCeEecCCCCCCCCCCceEEE-eeCCeEEEEeCCCCcEEEEECCCCceEEccc----ccccccceeEEE--ECCEEEEE
Q 016368 275 LDKWKEMPEGMHAGWNGPAAST-MNEEELYVVNEGKGRLSKYDADHDWWDEVIE----LAELKGAEKITA--ARGRVCAV 347 (390)
Q Consensus 275 ~~~W~~~~~~~~~~~~~~~~~~-~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~----~p~~r~~~~~~~--~~g~l~i~ 347 (390)
+++=..... .+.....+++ ..+.++|+....++.+..+|.++..=.+ .. .+.........+ -+.++|+.
T Consensus 149 t~~~~~~~~---vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 149 TNKVTATIP---VGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred CCeEEEEEe---cCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEE
Confidence 876444322 1111133333 2455699998777899999988765333 22 333333344444 35668887
Q ss_pred eeCC--ceEEEEEcCCC
Q 016368 348 CENG--ERIMVVDVLAS 362 (390)
Q Consensus 348 g~~~--~~v~~~d~~~~ 362 (390)
-... +.+..+|..+.
T Consensus 225 ~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 225 NDGSGSNNVLKIDTATG 241 (381)
T ss_pred eccCCCceEEEEeCCCc
Confidence 5443 47888887775
No 171
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=82.02 E-value=56 Score=32.38 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=54.2
Q ss_pred EEEeCCCCCeEecCCC-CCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc--eEEcccccccccceeEEEE-CCEE
Q 016368 269 AIYNVELDKWKEMPEG-MHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW--WDEVIELAELKGAEKITAA-RGRV 344 (390)
Q Consensus 269 ~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~-~g~l 344 (390)
-+|+...++-+.+... .|.+-...+++...+...+++|-.++.+..||..+.. +.+..-+| .-++.+ +|.+
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P-----~~iaWHp~gai 313 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIP-----TLIAWHPDGAI 313 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccc-----eEEEEcCCCcE
Confidence 3677776665544321 1121111122213578888999999999999987653 33322221 123333 7889
Q ss_pred EEEeeCCceEEEEEcCCC
Q 016368 345 CAVCENGERIMVVDVLAS 362 (390)
Q Consensus 345 ~i~g~~~~~v~~~d~~~~ 362 (390)
+++|+..+.++.||+.-+
T Consensus 314 ~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 314 FVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCceEEEEEeecC
Confidence 999888789999998664
No 172
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=81.84 E-value=44 Score=30.99 Aligned_cols=246 Identities=15% Similarity=0.096 Sum_probs=120.3
Q ss_pred cccEEEEeecCCCCCCCCCCcccCCCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEE
Q 016368 73 FFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLI 152 (390)
Q Consensus 73 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (390)
+..||....++ .......+.+|+..++...+...+. +-.. ++......++-+++
T Consensus 51 ~~~LY~v~~~~------------~~ggvaay~iD~~~G~Lt~ln~~~~-~g~~-------------p~yvsvd~~g~~vf 104 (346)
T COG2706 51 QRHLYVVNEPG------------EEGGVAAYRIDPDDGRLTFLNRQTL-PGSP-------------PCYVSVDEDGRFVF 104 (346)
T ss_pred CCEEEEEEecC------------CcCcEEEEEEcCCCCeEEEeecccc-CCCC-------------CeEEEECCCCCEEE
Confidence 44688877664 1444567778887777776653332 1110 01444444554444
Q ss_pred EeecCCCCCCCCCcEEEeCCCC-c-------eecCCCCCCCC-----cceEEEEECCEEEEEeccCCCCCCCccCeEEEE
Q 016368 153 AATTPHFLPALASPLAFNPQSN-T-------WFFGPQLSIPR-----RWCAMGSVGGVVYVASGVGAHYRGDVARSMKKW 219 (390)
Q Consensus 153 gG~~~~~~~~~~~~~~~dp~t~-~-------W~~~~~~~~~r-----~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~y 219 (390)
... ...+.+.+|-..++ . -.....-|.+| .+++-..-+++..+.- +--.+.+.+|
T Consensus 105 ~An-----Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~-------DLG~Dri~~y 172 (346)
T COG2706 105 VAN-----YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP-------DLGTDRIFLY 172 (346)
T ss_pred EEE-----ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe-------ecCCceEEEE
Confidence 433 23356667666442 1 12223334455 2222222244333332 2234578889
Q ss_pred ECCCCccccccEEcccCCCC-CccccceEEEEE-CCE-EEEEcccCCCCcee--EEEeCCCCCeEecCCC--CCCCCC--
Q 016368 220 DLKSDREDWKWEKKAQLKDG-RFSREAVEAVGF-KGN-LCMVNLKGNGAKDG--AIYNVELDKWKEMPEG--MHAGWN-- 290 (390)
Q Consensus 220 d~~t~~~~~~W~~~~~~~~~-~~~r~~~~~~~~-~g~-lyv~gg~g~~~~~~--~~yd~~~~~W~~~~~~--~~~~~~-- 290 (390)
+...+. -+........ -.. ..| +++. +++ .|++. +-..++ +.||....+.++++.. +|....
T Consensus 173 ~~~dg~----L~~~~~~~v~~G~G-PRH-i~FHpn~k~aY~v~---EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 173 DLDDGK----LTPADPAEVKPGAG-PRH-IVFHPNGKYAYLVN---ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred EcccCc----cccccccccCCCCC-cce-EEEcCCCcEEEEEe---ccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 888665 4433221111 010 012 2332 444 67762 222233 3577777788776532 333322
Q ss_pred -CceE-EE-eeCCeEEEEeCCCCcEEEE--ECCCCceEEccccc---ccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368 291 -GPAA-ST-MNEEELYVVNEGKGRLSKY--DADHDWWDEVIELA---ELKGAEKITAARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 291 -~~~~-~~-~~~g~lyv~gg~~~~v~~y--d~~~~~W~~i~~~p---~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
+.++ .. ..+..||+.....+.|..| |+.+..-..+...+ .....+.+...++.|++.+...+.+.+|.+...
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 2222 22 2345666666555555555 55655544443222 212335566667777777666667888877666
Q ss_pred CCc
Q 016368 363 PAR 365 (390)
Q Consensus 363 ~~~ 365 (390)
+++
T Consensus 324 TG~ 326 (346)
T COG2706 324 TGR 326 (346)
T ss_pred Cce
Confidence 543
No 173
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=81.72 E-value=48 Score=31.34 Aligned_cols=229 Identities=14% Similarity=0.143 Sum_probs=113.9
Q ss_pred eEEEEeCCCCC--ceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCC--ce
Q 016368 101 EFFCFDPISST--WNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSN--TW 176 (390)
Q Consensus 101 ~~~~~d~~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~--~W 176 (390)
.++++|+.+.+ |........ .... .-+...++.++++... ..++++|..++ .|
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~-~~~~---------------~~~~~~~G~i~~g~~~-------g~~y~ld~~~G~~~W 135 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAV-AQLS---------------GPILGSDGKIYVGSWD-------GKLYALDASTGTLVW 135 (370)
T ss_pred cEEEEeCCCCcEEecccCcCcc-eecc---------------CceEEeCCeEEEeccc-------ceEEEEECCCCcEEE
Confidence 58899999876 765332200 0000 1112225556666442 27889999655 67
Q ss_pred ecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC--CCCCccccceEEEEECCE
Q 016368 177 FFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL--KDGRFSREAVEAVGFKGN 254 (390)
Q Consensus 177 ~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~--~~~~~~r~~~~~~~~~g~ 254 (390)
+.--... ++..-..++.++.+|+.. ....+.+.|..+.+. +|+.-... ..... ...+..++.
T Consensus 136 ~~~~~~~-~~~~~~~v~~~~~v~~~s---------~~g~~~al~~~tG~~--~W~~~~~~~~~~~~~----~~~~~~~~~ 199 (370)
T COG1520 136 SRNVGGS-PYYASPPVVGDGTVYVGT---------DDGHLYALNADTGTL--KWTYETPAPLSLSIY----GSPAIASGT 199 (370)
T ss_pred EEecCCC-eEEecCcEEcCcEEEEec---------CCCeEEEEEccCCcE--EEEEecCCccccccc----cCceeecce
Confidence 6533322 333333444567777653 224677888887663 37743322 22111 223367888
Q ss_pred EEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCC--------CCCceEEEeeCCeEEEEeCCCCcEEEEECCCC--ce
Q 016368 255 LCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAG--------WNGPAASTMNEEELYVVNEGKGRLSKYDADHD--WW 322 (390)
Q Consensus 255 lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~--------~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~--~W 322 (390)
+|+-.. + .......+|++++ .|+.... .+.. ......+. .++.+|. +...+.+..+|..+. .|
T Consensus 200 vy~~~~-~-~~~~~~a~~~~~G~~~w~~~~~-~~~~~~~~~~~~~~~~~~v~-v~~~~~~-~~~~g~~~~l~~~~G~~~W 274 (370)
T COG1520 200 VYVGSD-G-YDGILYALNAEDGTLKWSQKVS-QTIGRTAISTTPAVDGGPVY-VDGGVYA-GSYGGKLLCLDADTGELIW 274 (370)
T ss_pred EEEecC-C-CcceEEEEEccCCcEeeeeeee-cccCcccccccccccCceEE-ECCcEEE-EecCCeEEEEEcCCCceEE
Confidence 887631 1 1224667888765 6875222 1111 11112222 3444432 223456777776653 37
Q ss_pred EEccccccc---ccceeEEEECCEEEEEeeCC-----ceEEEEEcCCCCCc-ceEecCCC
Q 016368 323 DEVIELAEL---KGAEKITAARGRVCAVCENG-----ERIMVVDVLASPAR-AWLVDPPR 373 (390)
Q Consensus 323 ~~i~~~p~~---r~~~~~~~~~g~l~i~g~~~-----~~v~~~d~~~~~~~-~W~~~~p~ 373 (390)
+.-..+... .........+|++|+..... ..+++++....... .|......
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~w~~~~~g 334 (370)
T COG1520 275 SFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYPVGG 334 (370)
T ss_pred EEecccEeccCCeeEEeecCCCccEEEEEeccccccccceEEEeccCCCeeEEEEEeCCC
Confidence 655432111 11122222478888875322 35677776333332 67755443
No 174
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.46 E-value=52 Score=31.60 Aligned_cols=124 Identities=10% Similarity=0.111 Sum_probs=62.6
Q ss_pred EECCCCccccccEEcccCCCCCccccceEE-EEECCEEEEEcccCCCCceeEEEeCCCC-----CeEecCCCCCCCCCCc
Q 016368 219 WDLKSDREDWKWEKKAQLKDGRFSREAVEA-VGFKGNLCMVNLKGNGAKDGAIYNVELD-----KWKEMPEGMHAGWNGP 292 (390)
Q Consensus 219 yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~-~~~~g~lyv~gg~g~~~~~~~~yd~~~~-----~W~~~~~~~~~~~~~~ 292 (390)
.|..... |+.+........ .++ ...++.++++|.. .....-+-... +|.+++. ...+..-.
T Consensus 265 ~d~G~~~----W~~~~~~~~~~l----~~v~~~~dg~l~l~g~~----G~l~~S~d~G~~~~~~~f~~~~~-~~~~~~l~ 331 (398)
T PLN00033 265 WEPGQPY----WQPHNRASARRI----QNMGWRADGGLWLLTRG----GGLYVSKGTGLTEEDFDFEEADI-KSRGFGIL 331 (398)
T ss_pred cCCCCcc----eEEecCCCccce----eeeeEcCCCCEEEEeCC----ceEEEecCCCCcccccceeeccc-CCCCcceE
Confidence 3444445 887765443322 223 2357888888511 11222222223 4555543 11111122
Q ss_pred eEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccc-ccccceeEEEE-CCEEEEEeeCCceEEEE
Q 016368 293 AASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELA-ELKGAEKITAA-RGRVCAVCENGERIMVV 357 (390)
Q Consensus 293 ~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p-~~r~~~~~~~~-~g~l~i~g~~~~~v~~~ 357 (390)
.+...-++.++++|. .|.+++-......|++..... ..-.-+.+... +++.|+.|.++ .|+.|
T Consensus 332 ~v~~~~d~~~~a~G~-~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G-~il~~ 396 (398)
T PLN00033 332 DVGYRSKKEAWAAGG-SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDG-VLLRY 396 (398)
T ss_pred EEEEcCCCcEEEEEC-CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCc-EEEEe
Confidence 233324677777765 566777777778999976322 11222344433 58899985444 44443
No 175
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=81.43 E-value=40 Score=30.33 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=98.1
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc---CCCC
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ---LKDG 239 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~---~~~~ 239 (390)
..+=..||.|++-...+- +..-.-|.+++- ++..++. + .-..+..+|+++.. -++.+- +...
T Consensus 83 gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gpdg~~Wit--------d-~~~aI~R~dpkt~e----vt~f~lp~~~a~~ 148 (353)
T COG4257 83 GAIGHLDPATGEVETYPL-GSGASPHGIVVGPDGSAWIT--------D-TGLAIGRLDPKTLE----VTRFPLPLEHADA 148 (353)
T ss_pred ccceecCCCCCceEEEec-CCCCCCceEEECCCCCeeEe--------c-CcceeEEecCcccc----eEEeecccccCCC
Confidence 445567999998776542 222222333222 4444443 1 12277888998876 444332 2221
Q ss_pred CccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEEC
Q 016368 240 RFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDA 317 (390)
Q Consensus 240 ~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~ 317 (390)
..-.+++ .|.++..|-.|. --.+|+.++.-+..+.+ .+..-.++|+.-+|.+|+-.-..+-+-+.|+
T Consensus 149 -----nlet~vfD~~G~lWFt~q~G~----yGrLdPa~~~i~vfpaP--qG~gpyGi~atpdGsvwyaslagnaiaridp 217 (353)
T COG4257 149 -----NLETAVFDPWGNLWFTGQIGA----YGRLDPARNVISVFPAP--QGGGPYGICATPDGSVWYASLAGNAIARIDP 217 (353)
T ss_pred -----cccceeeCCCccEEEeecccc----ceecCcccCceeeeccC--CCCCCcceEECCCCcEEEEeccccceEEccc
Confidence 1222333 556777642121 11778887776665552 3333334554489999998777778888898
Q ss_pred CCCceEEccccccc-c-cceeEE-EECCEEEEEeeCCceEEEEEcCCCCCcceE
Q 016368 318 DHDWWDEVIELAEL-K-GAEKIT-AARGRVCAVCENGERIMVVDVLASPARAWL 368 (390)
Q Consensus 318 ~~~~W~~i~~~p~~-r-~~~~~~-~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~ 368 (390)
.+..=.++. .|.. . ..-.+- ---|++.+-.-++..++.||++.. +|.
T Consensus 218 ~~~~aev~p-~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~---sW~ 267 (353)
T COG4257 218 FAGHAEVVP-QPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT---SWI 267 (353)
T ss_pred ccCCcceec-CCCcccccccccccCccCcEEEeccCCceeeEeCcccc---cce
Confidence 877444443 2222 1 111222 225677777555678888888876 565
No 176
>smart00284 OLF Olfactomedin-like domains.
Probab=81.19 E-value=40 Score=30.09 Aligned_cols=160 Identities=15% Similarity=0.092 Sum_probs=80.1
Q ss_pred eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCC------------CcceEEEEECCEEEEEeccCCCC
Q 016368 141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIP------------RRWCAMGSVGGVVYVASGVGAHY 208 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~------------r~~~~~~~~~~~lyv~GG~~~~~ 208 (390)
..++.++.+|+--. ....+..||..+++-.....+|.+ -...-.++-.+-|.|+=....
T Consensus 78 G~VVYngslYY~~~-------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~-- 148 (255)
T smart00284 78 GVVVYNGSLYFNKF-------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ-- 148 (255)
T ss_pred cEEEECceEEEEec-------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC--
Confidence 56667777777532 346899999999976433333321 112334444444554421111
Q ss_pred CCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCC-CceeEEEeCCCCCeEecCCCCCC
Q 016368 209 RGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNG-AKDGAIYNVELDKWKEMPEGMHA 287 (390)
Q Consensus 209 ~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~-~~~~~~yd~~~~~W~~~~~~~~~ 287 (390)
....--+-..|+.|-...--|..-- +... ...+.++-|.||++-..... ..-..+||+.+++=..+.-.++.
T Consensus 149 -~~g~ivvSkLnp~tL~ve~tW~T~~--~k~s----a~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n 221 (255)
T smart00284 149 -NAGKIVISKLNPATLTIENTWITTY--NKRS----ASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFEN 221 (255)
T ss_pred -CCCCEEEEeeCcccceEEEEEEcCC--Cccc----ccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeecc
Confidence 0011122345554432111165422 2111 24456678999998311111 12245899998764433332333
Q ss_pred CCCCceEEE--eeCCeEEEEeCCCCcEEEEECC
Q 016368 288 GWNGPAAST--MNEEELYVVNEGKGRLSKYDAD 318 (390)
Q Consensus 288 ~~~~~~~~~--~~~g~lyv~gg~~~~v~~yd~~ 318 (390)
.....++.- ..+.+||+.. ++.+..||..
T Consensus 222 ~y~~~s~l~YNP~d~~LY~wd--ng~~l~Y~v~ 252 (255)
T smart00284 222 MYEYISMLDYNPNDRKLYAWN--NGHLVHYDIA 252 (255)
T ss_pred ccccceeceeCCCCCeEEEEe--CCeEEEEEEE
Confidence 333333332 4568888875 4677777754
No 177
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=80.94 E-value=77 Score=33.25 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=36.7
Q ss_pred CCeEEEEeCCCCcEEEEECCCCceEEcccccccc--cceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368 299 EEELYVVNEGKGRLSKYDADHDWWDEVIELAELK--GAEKITAA--RGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 299 ~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r--~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~ 361 (390)
+|++.+.+ .++.|.+|+.. .|.....+.... ..+..+.+ +|+-...+.-++.|.+||+.+
T Consensus 200 ~g~la~~~-~d~~Vkvy~r~--~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 200 GGTLAVPP-VDNTVKVYSRK--GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCeEEeec-cCCeEEEEccC--CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 35555444 57788899765 588877665332 22444444 444444445577999999883
No 178
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=80.64 E-value=58 Score=31.60 Aligned_cols=183 Identities=13% Similarity=0.123 Sum_probs=90.9
Q ss_pred CCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368 162 ALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF 241 (390)
Q Consensus 162 ~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~ 241 (390)
...++++++...++-+++.-...+-..-+.-.-+|.|.|..-... ....-.+.|-...+. ....+++-.+.
T Consensus 105 ~taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~t----PF~q~~~lYkv~~dg-----~~~e~LnlGpa 175 (668)
T COG4946 105 QTADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHT----PFSQWTELYKVNVDG-----IKTEPLNLGPA 175 (668)
T ss_pred ccccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCC----CcccceeeeEEccCC-----ceeeeccCCce
Confidence 456899999998888877655322222233333677777654432 122233455554443 22333443332
Q ss_pred cccceEEEEECCEEEEEccc--------CC-CCceeEEEe--CCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC
Q 016368 242 SREAVEAVGFKGNLCMVNLK--------GN-GAKDGAIYN--VELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG 310 (390)
Q Consensus 242 ~r~~~~~~~~~g~lyv~gg~--------g~-~~~~~~~yd--~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~ 310 (390)
...+.-+| +.++|-. ++ |+..+..+- -...+++++-. ++..-. ..+. +++++|.+...+|
T Consensus 176 ----thiv~~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vd-l~~~vS-~PmI--V~~RvYFlsD~eG 246 (668)
T COG4946 176 ----THIVIKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVD-LDGNVS-SPMI--VGERVYFLSDHEG 246 (668)
T ss_pred ----eeEEEeCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeee-cCCCcC-CceE--EcceEEEEecccC
Confidence 44555566 4445311 11 222232221 12225555554 433222 2333 6899999988776
Q ss_pred --cEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCCCCc
Q 016368 311 --RLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPAR 365 (390)
Q Consensus 311 --~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~ 365 (390)
.++.-|...+--++-..... ....-+..+|+-.|+ ..+.+|++||+.+...+
T Consensus 247 ~GnlYSvdldGkDlrrHTnFtd--YY~R~~nsDGkrIvF-q~~GdIylydP~td~le 300 (668)
T COG4946 247 VGNLYSVDLDGKDLRRHTNFTD--YYPRNANSDGKRIVF-QNAGDIYLYDPETDSLE 300 (668)
T ss_pred ccceEEeccCCchhhhcCCchh--ccccccCCCCcEEEE-ecCCcEEEeCCCcCcce
Confidence 77777777554333322110 000112235555555 45557777777665433
No 179
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=80.58 E-value=60 Score=31.80 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=66.3
Q ss_pred EEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEE-eeCCeEEEEeCCCCcEEEEECCCCceEEcc
Q 016368 248 AVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAAST-MNEEELYVVNEGKGRLSKYDADHDWWDEVI 326 (390)
Q Consensus 248 ~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~ 326 (390)
++..++...++||+ +++ +.+|.+..+.-.+... ....+.....+. ..++..+..+...+++..||.+++.= ...
T Consensus 450 Av~~~~~~vaVGG~--Dgk-vhvysl~g~~l~ee~~-~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-~~~ 524 (603)
T KOG0318|consen 450 AVSPDGSEVAVGGQ--DGK-VHVYSLSGDELKEEAK-LLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-KTN 524 (603)
T ss_pred EEcCCCCEEEEecc--cce-EEEEEecCCcccceee-eecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-ecc
Confidence 44456777778743 223 7789888765444333 222222222222 46888888888888999999887543 222
Q ss_pred cccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCCC
Q 016368 327 ELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLASP 363 (390)
Q Consensus 327 ~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~~ 363 (390)
.+..+.....+.++ +++++.-|+-+..|++|++.++.
T Consensus 525 ~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 525 RWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred eeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh
Confidence 22222222223333 66777776778899999998874
No 180
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=79.94 E-value=45 Score=32.47 Aligned_cols=94 Identities=12% Similarity=0.084 Sum_probs=51.6
Q ss_pred eEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceE
Q 016368 215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAA 294 (390)
Q Consensus 215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 294 (390)
.+..||.....--+.|.+...-|.. +.+.+-.+.++++--| ..+.+..||.....=+..-. -..+. .++
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsAP~~-----gicfspsne~l~vsVG---~Dkki~~yD~~s~~s~~~l~-y~~Pl--stv 256 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSAPCR-----GICFSPSNEALLVSVG---YDKKINIYDIRSQASTDRLT-YSHPL--STV 256 (673)
T ss_pred eEEEEeccCCCcccchhhhccCCcC-----cceecCCccceEEEec---ccceEEEeecccccccceee-ecCCc--cee
Confidence 5566776554322226555554432 2333345666666421 34567789987553322111 11111 223
Q ss_pred EEeeCCeEEEEeCCCCcEEEEECCC
Q 016368 295 STMNEEELYVVNEGKGRLSKYDADH 319 (390)
Q Consensus 295 ~~~~~g~lyv~gg~~~~v~~yd~~~ 319 (390)
+..-+|.+.+.|...|.++.||+..
T Consensus 257 af~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 257 AFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred eecCCceEEEeecCCceEEEEeccc
Confidence 3236788888998889999999874
No 181
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=79.13 E-value=48 Score=29.78 Aligned_cols=146 Identities=12% Similarity=0.160 Sum_probs=79.2
Q ss_pred CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEE-EECCEEEEEcccCCCCceeEEEeC
Q 016368 195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAV-GFKGNLCMVNLKGNGAKDGAIYNV 273 (390)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~-~~~g~lyv~gg~g~~~~~~~~yd~ 273 (390)
++...+.++.+. .+..+|..+.+. =+++. ..... -.+++ ..+++-.|-| ...++...||.
T Consensus 74 dg~~alS~swD~--------~lrlWDl~~g~~---t~~f~--GH~~d---Vlsva~s~dn~qivSG---SrDkTiklwnt 134 (315)
T KOG0279|consen 74 DGNFALSASWDG--------TLRLWDLATGES---TRRFV--GHTKD---VLSVAFSTDNRQIVSG---SRDKTIKLWNT 134 (315)
T ss_pred CCceEEeccccc--------eEEEEEecCCcE---EEEEE--ecCCc---eEEEEecCCCceeecC---CCcceeeeeee
Confidence 566666666554 677788887651 11111 11111 12222 2355555552 23345667777
Q ss_pred CCCCeEecCCCCCCCCCCceEEEeeC--CeEEEEeCCCCcEEEEECCCCceEEccccccccc-ceeEEE-ECCEEEEEee
Q 016368 274 ELDKWKEMPEGMHAGWNGPAASTMNE--EELYVVNEGKGRLSKYDADHDWWDEVIELAELKG-AEKITA-ARGRVCAVCE 349 (390)
Q Consensus 274 ~~~~W~~~~~~~~~~~~~~~~~~~~~--g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~-~~~~~~-~~g~l~i~g~ 349 (390)
..+.=-++...+...+..+...+ .+ +-+.+-++.++.+-+||..+-+-. ...+.... ..++.+ .+|.+++-|+
T Consensus 135 ~g~ck~t~~~~~~~~WVscvrfs-P~~~~p~Ivs~s~DktvKvWnl~~~~l~--~~~~gh~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 135 LGVCKYTIHEDSHREWVSCVRFS-PNESNPIIVSASWDKTVKVWNLRNCQLR--TTFIGHSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred cccEEEEEecCCCcCcEEEEEEc-CCCCCcEEEEccCCceEEEEccCCcchh--hccccccccEEEEEECCCCCEEecCC
Confidence 66543344432322222222222 33 556667778889999998864322 22222222 223444 3999999988
Q ss_pred CCceEEEEEcCCC
Q 016368 350 NGERIMVVDVLAS 362 (390)
Q Consensus 350 ~~~~v~~~d~~~~ 362 (390)
.+..++++|+...
T Consensus 212 kdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 212 KDGEAMLWDLNEG 224 (315)
T ss_pred CCceEEEEEccCC
Confidence 8889999999876
No 182
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=77.95 E-value=70 Score=31.04 Aligned_cols=121 Identities=15% Similarity=0.130 Sum_probs=64.3
Q ss_pred eEEeecCeEEEEEeecCCC-------CCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCcc
Q 016368 141 QSLGVRNNLVLIAATTPHF-------LPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVA 213 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~-------~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 213 (390)
...+..++++++|-..... ..+-..+|+-.-..+.++++-.|+.... +-..++++||.+.-.++ .
T Consensus 176 thiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS--~PmIV~~RvYFlsD~eG------~ 247 (668)
T COG4946 176 THIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVS--SPMIVGERVYFLSDHEG------V 247 (668)
T ss_pred eeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcC--CceEEcceEEEEecccC------c
Confidence 3445566677776443110 0223345554444446666655543222 23456899999876543 2
Q ss_pred CeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecC
Q 016368 214 RSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMP 282 (390)
Q Consensus 214 ~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~ 282 (390)
-.++.-|...+. -++-.++..- .+.-+..+|+-.++. .+.+++.|||+++.-+.+.
T Consensus 248 GnlYSvdldGkD----lrrHTnFtdY-----Y~R~~nsDGkrIvFq----~~GdIylydP~td~lekld 303 (668)
T COG4946 248 GNLYSVDLDGKD----LRRHTNFTDY-----YPRNANSDGKRIVFQ----NAGDIYLYDPETDSLEKLD 303 (668)
T ss_pred cceEEeccCCch----hhhcCCchhc-----cccccCCCCcEEEEe----cCCcEEEeCCCcCcceeee
Confidence 344555555554 3333333221 122334577766664 4556788888888776654
No 183
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=77.76 E-value=42 Score=30.46 Aligned_cols=135 Identities=13% Similarity=0.054 Sum_probs=66.3
Q ss_pred CCEEEEEeccCCCCCCCccCeEEEE---ECCCCccccccEEcccCCCCCccccceEEEEE-------CCEEEEEcccCCC
Q 016368 195 GGVVYVASGVGAHYRGDVARSMKKW---DLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-------KGNLCMVNLKGNG 264 (390)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~~~~~~~y---d~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-------~g~lyv~gg~g~~ 264 (390)
+|..++.||++. .+..+ .-..|. |..- +|+.|+. ++.++-+| .
T Consensus 58 ~gs~~aSgG~Dr--------~I~LWnv~gdceN~----~~lk-----------gHsgAVM~l~~~~d~s~i~S~g----t 110 (338)
T KOG0265|consen 58 DGSCFASGGSDR--------AIVLWNVYGDCENF----WVLK-----------GHSGAVMELHGMRDGSHILSCG----T 110 (338)
T ss_pred CCCeEeecCCcc--------eEEEEeccccccce----eeec-----------cccceeEeeeeccCCCEEEEec----C
Confidence 677888888875 34443 334454 5432 1333322 44566664 4
Q ss_pred CceeEEEeCCCCCeEecCCCCCCCCCCceE-EEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--C
Q 016368 265 AKDGAIYNVELDKWKEMPEGMHAGWNGPAA-STMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--R 341 (390)
Q Consensus 265 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~ 341 (390)
.+.+..||.++++=...-. . .....-++ ..-.+-.|..-|..++.+..||..+..=.+ .+..+..-..+.+ .
T Consensus 111 Dk~v~~wD~~tG~~~rk~k-~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~---t~~~kyqltAv~f~d~ 185 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIRKHK-G-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK---TFENKYQLTAVGFKDT 185 (338)
T ss_pred CceEEEEecccceeeehhc-c-ccceeeecCccccCCeEEEecCCCceEEEEeecccchhh---ccccceeEEEEEeccc
Confidence 5677889999876433211 0 00000000 101334455556667789999987542222 1222222222332 1
Q ss_pred CEEEEEeeCCceEEEEEcCC
Q 016368 342 GRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 342 g~l~i~g~~~~~v~~~d~~~ 361 (390)
+.-.+.|+-+++|-+||+..
T Consensus 186 s~qv~sggIdn~ikvWd~r~ 205 (338)
T KOG0265|consen 186 SDQVISGGIDNDIKVWDLRK 205 (338)
T ss_pred ccceeeccccCceeeecccc
Confidence 22233335566777777754
No 184
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=77.37 E-value=59 Score=29.84 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=54.8
Q ss_pred CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEE--EECCE-EEEEeccCCCCCCCccCeEEEEECCC
Q 016368 147 NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMG--SVGGV-VYVASGVGAHYRGDVARSMKKWDLKS 223 (390)
Q Consensus 147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~--~~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t 223 (390)
....++++. .+-.-..+||+.+++-...-..+..|.+++-+ .-+|+ ||..=... ....--+-+||..
T Consensus 16 ~~~avafaR-----RPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~----~~g~G~IgVyd~~- 85 (305)
T PF07433_consen 16 RPEAVAFAR-----RPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDY----ETGRGVIGVYDAA- 85 (305)
T ss_pred CCeEEEEEe-----CCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecccc----CCCcEEEEEEECc-
Confidence 455666666 34467889999998765443445667554444 44554 66543322 2234468899998
Q ss_pred CccccccEEcccCCCCCccccceEEEEE-CCEEEEE
Q 016368 224 DREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMV 258 (390)
Q Consensus 224 ~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~ 258 (390)
+. .+++...+..-.. .|.+... +|+-.++
T Consensus 86 ~~----~~ri~E~~s~GIG--PHel~l~pDG~tLvV 115 (305)
T PF07433_consen 86 RG----YRRIGEFPSHGIG--PHELLLMPDGETLVV 115 (305)
T ss_pred CC----cEEEeEecCCCcC--hhhEEEcCCCCEEEE
Confidence 55 6777776643221 2444443 5533333
No 185
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=77.14 E-value=52 Score=29.12 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=36.2
Q ss_pred CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEE--eeCCeEEEEeCCCCcEEEEEC
Q 016368 252 KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAAST--MNEEELYVVNEGKGRLSKYDA 317 (390)
Q Consensus 252 ~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~g~lyv~gg~~~~v~~yd~ 317 (390)
+..+||.||. ......||..++.=... ...+..++..++ ..+|.+|..|..+|.+..|..
T Consensus 235 ~k~~fVaGge---d~~~~kfDy~TgeEi~~---~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 235 KKEFFVAGGE---DFKVYKFDYNTGEEIGS---YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred CCceEEecCc---ceEEEEEeccCCceeee---cccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 5568888411 22345677776643322 123444444443 579999999999997766544
No 186
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=76.45 E-value=62 Score=29.67 Aligned_cols=151 Identities=13% Similarity=0.252 Sum_probs=79.9
Q ss_pred ccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE---ECCEEEEEcccCCCCceeEEEeC-CCCCeEecCCCCCC
Q 016368 212 VARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG---FKGNLCMVNLKGNGAKDGAIYNV-ELDKWKEMPEGMHA 287 (390)
Q Consensus 212 ~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~---~~g~lyv~gg~g~~~~~~~~yd~-~~~~W~~~~~~~~~ 287 (390)
..+++++|....+.. |+....+...-. ...++- ..++|.-++ ..+..+++.. +..+|.........
T Consensus 30 ~~~evhiy~~~~~~~---w~~~htls~Hd~---~vtgvdWap~snrIvtcs----~drnayVw~~~~~~~WkptlvLlRi 99 (361)
T KOG1523|consen 30 NNHEVHIYSMLGADL---WEPAHTLSEHDK---IVTGVDWAPKSNRIVTCS----HDRNAYVWTQPSGGTWKPTLVLLRI 99 (361)
T ss_pred CCceEEEEEecCCCC---ceeceehhhhCc---ceeEEeecCCCCceeEcc----CCCCccccccCCCCeeccceeEEEe
Confidence 345889998876553 888776543221 011221 244565553 3344567777 67799876553333
Q ss_pred CCCCceEEEeeCCeEEEEeCCCC--cEEEEECCCCceEEcccccccccce-eEEEE-CCEEEEEeeCCc-----eEEEEE
Q 016368 288 GWNGPAASTMNEEELYVVNEGKG--RLSKYDADHDWWDEVIELAELKGAE-KITAA-RGRVCAVCENGE-----RIMVVD 358 (390)
Q Consensus 288 ~~~~~~~~~~~~g~lyv~gg~~~--~v~~yd~~~~~W~~i~~~p~~r~~~-~~~~~-~g~l~i~g~~~~-----~v~~~d 358 (390)
.|...++-...++..|.+|+... .++-|.-+.+-|.-...-.+.|... ++..+ ++-+...|+.+. +.++=+
T Consensus 100 NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~ 179 (361)
T KOG1523|consen 100 NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKG 179 (361)
T ss_pred ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeec
Confidence 33322222256788888887555 5666766666565433212223322 23333 444555544322 455556
Q ss_pred cCCCCC-cceEecCC
Q 016368 359 VLASPA-RAWLVDPP 372 (390)
Q Consensus 359 ~~~~~~-~~W~~~~p 372 (390)
+.++++ .-|.-.+|
T Consensus 180 Vdekpap~pWgsk~P 194 (361)
T KOG1523|consen 180 VDEKPAPTPWGSKMP 194 (361)
T ss_pred cccCCCCCCCccCCc
Confidence 666543 34765544
No 187
>PRK02888 nitrous-oxide reductase; Validated
Probab=75.66 E-value=98 Score=31.52 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=44.8
Q ss_pred eCCeEEEEeCCCCcEEEEECCC---CceEEcccccccccceeEEEE-C-CEEEEEeeCCceEEEEEcCCC
Q 016368 298 NEEELYVVNEGKGRLSKYDADH---DWWDEVIELAELKGAEKITAA-R-GRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~~---~~W~~i~~~p~~r~~~~~~~~-~-g~l~i~g~~~~~v~~~d~~~~ 362 (390)
-+|+...++ .+.+-+.|..+ ..+..+..+|.++..|++.+. + ..+|+-|+...++.++|+.+.
T Consensus 286 kdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 286 KAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred hCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 345433343 35788999886 246778888889999998887 3 446666565779999999874
No 188
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=75.29 E-value=50 Score=27.99 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=53.6
Q ss_pred CEEEEEcccCCCCceeEEEeCCCCCeEe---cCC-CCCC--CCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEE--
Q 016368 253 GNLCMVNLKGNGAKDGAIYNVELDKWKE---MPE-GMHA--GWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDE-- 324 (390)
Q Consensus 253 g~lyv~gg~g~~~~~~~~yd~~~~~W~~---~~~-~~~~--~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~-- 324 (390)
|++|++ -+...+.||..+..... +.. ..+. ...-++.....++++|++.| +..|+||...++-..
T Consensus 63 ~~~yfF-----kg~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--~~y~ry~~~~~~v~~~y 135 (194)
T cd00094 63 GKIYFF-----KGDKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--DKYWRYDEKTQKMDPGY 135 (194)
T ss_pred CEEEEE-----CCCEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--CEEEEEeCCCccccCCC
Confidence 899999 45567778766422211 111 0111 11112222112689999976 678999976544311
Q ss_pred ---c----ccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368 325 ---V----IELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 325 ---i----~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
+ ..+|.. ...++...+|++|++ . +..++.+|..+.
T Consensus 136 P~~i~~~w~g~p~~-idaa~~~~~~~~yfF-~-g~~y~~~d~~~~ 177 (194)
T cd00094 136 PKLIETDFPGVPDK-VDAAFRWLDGYYYFF-K-GDQYWRFDPRSK 177 (194)
T ss_pred CcchhhcCCCcCCC-cceeEEeCCCcEEEE-E-CCEEEEEeCccc
Confidence 1 112211 122333335899998 3 358899998765
No 189
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=73.76 E-value=94 Score=30.43 Aligned_cols=107 Identities=10% Similarity=0.010 Sum_probs=66.6
Q ss_pred EECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccc
Q 016368 250 GFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELA 329 (390)
Q Consensus 250 ~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p 329 (390)
.-||+-.++||. ..+..++|+..-+=+........+..+.++++..|-++.+-.-.+|.|.+||..... .+..++
T Consensus 474 ~pdgrtLivGGe---astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--~Vrqfq 548 (705)
T KOG0639|consen 474 LPDGRTLIVGGE---ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--LVRQFQ 548 (705)
T ss_pred cCCCceEEeccc---cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--eeeccc
Confidence 348888888733 456678999877655443311122333344433677777766678899999988543 344455
Q ss_pred ccccceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368 330 ELKGAEKITAA--RGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 330 ~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~ 361 (390)
....+.+|..+ +|.-.-.|+-++.|-.||+.+
T Consensus 549 GhtDGascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 549 GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred CCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence 55555666655 344444456677888888766
No 190
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.74 E-value=53 Score=29.32 Aligned_cols=106 Identities=11% Similarity=-0.014 Sum_probs=0.0
Q ss_pred EEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCC-ceEE
Q 016368 248 AVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHD-WWDE 324 (390)
Q Consensus 248 ~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~-~W~~ 324 (390)
++.-+.+-|++- |........-|+.++ .|+.+-. .|...++.+ +++. .|+|-.++.++..+.++. +--.
T Consensus 17 VV~~dskT~v~i--gSHs~~~~avd~~sG~~~We~ilg----~RiE~sa~v-vgdf-VV~GCy~g~lYfl~~~tGs~~w~ 88 (354)
T KOG4649|consen 17 VVCNDSKTLVVI--GSHSGIVIAVDPQSGNLIWEAILG----VRIECSAIV-VGDF-VVLGCYSGGLYFLCVKTGSQIWN 88 (354)
T ss_pred EEecCCceEEEE--ecCCceEEEecCCCCcEEeehhhC----ceeeeeeEE-ECCE-EEEEEccCcEEEEEecchhheee
Q ss_pred cccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368 325 VIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 325 i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
...+..-.....+..-+|.||.- ..+.+++++|+++.
T Consensus 89 f~~~~~vk~~a~~d~~~glIycg-shd~~~yalD~~~~ 125 (354)
T KOG4649|consen 89 FVILETVKVRAQCDFDGGLIYCG-SHDGNFYALDPKTY 125 (354)
T ss_pred eeehhhhccceEEcCCCceEEEe-cCCCcEEEeccccc
No 191
>PTZ00421 coronin; Provisional
Probab=73.61 E-value=1e+02 Score=30.67 Aligned_cols=93 Identities=14% Similarity=0.049 Sum_probs=49.7
Q ss_pred CceeEEEeCCCCCeEe-cCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccc--eeEEEE-
Q 016368 265 AKDGAIYNVELDKWKE-MPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGA--EKITAA- 340 (390)
Q Consensus 265 ~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~--~~~~~~- 340 (390)
...+.+||+.+.+-.. +.. ......++....+|.+++.++.++.+..||+.+..- +..+...... ..+...
T Consensus 147 DgtVrIWDl~tg~~~~~l~~---h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~--v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKC---HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI--VSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred CCEEEEEECCCCeEEEEEcC---CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE--EEEEecCCCCcceEEEEcC
Confidence 3456789988764221 111 111112233235789999999999999999987642 2222211111 112222
Q ss_pred -CCEEEEEee---CCceEEEEEcCCC
Q 016368 341 -RGRVCAVCE---NGERIMVVDVLAS 362 (390)
Q Consensus 341 -~g~l~i~g~---~~~~v~~~d~~~~ 362 (390)
++.|+..|. .+..|.+||+.+.
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 344554542 2457888998653
No 192
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.62 E-value=81 Score=28.77 Aligned_cols=161 Identities=9% Similarity=0.040 Sum_probs=85.9
Q ss_pred eEEeecCeEEEEEeecCC---------------CCCCCCCcEEEeCCCCc----eecCCCCCCCCcceEE-EE---ECCE
Q 016368 141 QSLGVRNNLVLIAATTPH---------------FLPALASPLAFNPQSNT----WFFGPQLSIPRRWCAM-GS---VGGV 197 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~---------------~~~~~~~~~~~dp~t~~----W~~~~~~~~~r~~~~~-~~---~~~~ 197 (390)
.++..-+..+++||.-.. ...-.+++..||...++ |++--.-+..-++-.. .. ++++
T Consensus 40 NAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~ 119 (339)
T PF09910_consen 40 NAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDR 119 (339)
T ss_pred eeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCE
Confidence 677777888889986311 11233568889988775 4443222211111111 11 2667
Q ss_pred EEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCC
Q 016368 198 VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDK 277 (390)
Q Consensus 198 lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~ 277 (390)
|++.-+... ..-.++..|.+++. =+.+..-|... .+.+.+-.++-+--.-.+...+.+||+.+++
T Consensus 120 LLlAR~DGh-----~nLGvy~ldr~~g~----~~~L~~~ps~K------G~~~~D~a~F~i~~~~~g~~~i~~~Dli~~~ 184 (339)
T PF09910_consen 120 LLLARADGH-----ANLGVYSLDRRTGK----AEKLSSNPSLK------GTLVHDYACFGINNFHKGVSGIHCLDLISGK 184 (339)
T ss_pred EEEEecCCc-----ceeeeEEEcccCCc----eeeccCCCCcC------ceEeeeeEEEeccccccCCceEEEEEccCCe
Confidence 887654332 33467777878887 56666655432 2333344444320001145667899999999
Q ss_pred e--EecCCCC-----CCCCC-CceEEEeeCCeEEEEeCCCCcEEEEECCC
Q 016368 278 W--KEMPEGM-----HAGWN-GPAASTMNEEELYVVNEGKGRLSKYDADH 319 (390)
Q Consensus 278 W--~~~~~~~-----~~~~~-~~~~~~~~~g~lyv~gg~~~~v~~yd~~~ 319 (390)
| ...+... +.-+. .-.++. ..+++|.+-+ |.+++.||..
T Consensus 185 ~~~e~f~~~~s~Dg~~~~~~~~G~~~s-~ynR~faF~r--GGi~vgnP~~ 231 (339)
T PF09910_consen 185 WVIESFDVSLSVDGGPVIRPELGAMAS-AYNRLFAFVR--GGIFVGNPYN 231 (339)
T ss_pred EEEEecccccCCCCCceEeeccccEEE-EeeeEEEEEe--ccEEEeCCCC
Confidence 9 3332211 01111 122232 6777776642 4788888873
No 193
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=71.14 E-value=1.1e+02 Score=30.03 Aligned_cols=105 Identities=11% Similarity=0.204 Sum_probs=58.2
Q ss_pred CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEE-EECCEEEEEcccCCCCceeEEEeC
Q 016368 195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAV-GFKGNLCMVNLKGNGAKDGAIYNV 273 (390)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~-~~~g~lyv~gg~g~~~~~~~~yd~ 273 (390)
+++-.++||+.. ++-++|+.+-+ =+.-..++..... +++.+ ..+.++.+-. .....+.+||+
T Consensus 476 dgrtLivGGeas--------tlsiWDLAapT----prikaeltssapa--CyALa~spDakvcFsc---csdGnI~vwDL 538 (705)
T KOG0639|consen 476 DGRTLIVGGEAS--------TLSIWDLAAPT----PRIKAELTSSAPA--CYALAISPDAKVCFSC---CSDGNIAVWDL 538 (705)
T ss_pred CCceEEeccccc--------eeeeeeccCCC----cchhhhcCCcchh--hhhhhcCCccceeeee---ccCCcEEEEEc
Confidence 788888998854 67788887766 3333344332110 23322 2455655441 12334678888
Q ss_pred CCCCeEecCCCCCCCCCCceEEE-eeCCeEEEEeCCCCcEEEEECCC
Q 016368 274 ELDKWKEMPEGMHAGWNGPAAST-MNEEELYVVNEGKGRLSKYDADH 319 (390)
Q Consensus 274 ~~~~W~~~~~~~~~~~~~~~~~~-~~~g~lyv~gg~~~~v~~yd~~~ 319 (390)
...+-.. . +.-..-+.++.. ..+|.-...||-++.+..||..+
T Consensus 539 hnq~~Vr--q-fqGhtDGascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 539 HNQTLVR--Q-FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred ccceeee--c-ccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence 7664322 2 211122333332 24577777888888888887764
No 194
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.04 E-value=68 Score=27.69 Aligned_cols=165 Identities=10% Similarity=0.046 Sum_probs=87.7
Q ss_pred CCCcEEEeCCCCceecCCCCCCCC-cceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368 163 LASPLAFNPQSNTWFFGPQLSIPR-RWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF 241 (390)
Q Consensus 163 ~~~~~~~dp~t~~W~~~~~~~~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~ 241 (390)
...+.++|..+++-..-.+++.++ .+-+.+.+++.+|..-=.+ .-.+.||+.|-. .+...+..-.
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e--------gvaf~~d~~t~~------~lg~~~y~Ge 132 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE--------GVAFKYDADTLE------ELGRFSYEGE 132 (262)
T ss_pred cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc--------ceeEEEChHHhh------hhcccccCCc
Confidence 467899999977543322222233 4456778899999875332 245778876643 3443333222
Q ss_pred cccceEEEEECCEEEEEcccCCCCcee-EEEeCCCC----CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368 242 SREAVEAVGFKGNLCMVNLKGNGAKDG-AIYNVELD----KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYD 316 (390)
Q Consensus 242 ~r~~~~~~~~~g~lyv~gg~g~~~~~~-~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd 316 (390)
+.+.+ .+++-.+++ .+... .--||++= +-+.--...|...-..- -. ++|.+|.=--.+..+.+.|
T Consensus 133 ---GWgLt-~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNEL-E~-VdG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 133 ---GWGLT-SDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNEL-EW-VDGELYANVWQTTRIARID 202 (262)
T ss_pred ---ceeee-cCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccce-ee-eccEEEEeeeeecceEEEc
Confidence 35555 444444442 33333 33455431 11111111122111111 22 6788886555667899999
Q ss_pred CCCCc---eEEccccccccc---c-----eeEEE--ECCEEEEEeeCC
Q 016368 317 ADHDW---WDEVIELAELKG---A-----EKITA--ARGRVCAVCENG 351 (390)
Q Consensus 317 ~~~~~---W~~i~~~p~~r~---~-----~~~~~--~~g~l~i~g~~~ 351 (390)
|++.+ |-.+..++.... . -+++. -.+++||.|..-
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~w 250 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLW 250 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcC
Confidence 99875 888887664321 1 12333 267888876543
No 195
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=69.90 E-value=67 Score=27.10 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=46.6
Q ss_pred eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecC-eEEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368 100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRN-NLVLIAATTPHFLPALASPLAFNPQSNTWFF 178 (390)
Q Consensus 100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~ 178 (390)
-.++.+|..++.|..+.--+...... |-.+..+++ .|+++.|...+...--..+++|++.|++-..
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~s-------------PK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ 154 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYS-------------PKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTE 154 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccC-------------CceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeE
Confidence 35899999999998764222200110 004555655 5666666544433455689999999999888
Q ss_pred CCCCCCCC
Q 016368 179 GPQLSIPR 186 (390)
Q Consensus 179 ~~~~~~~r 186 (390)
+-+.....
T Consensus 155 ly~~~dkk 162 (200)
T PF15525_consen 155 LYEWKDKK 162 (200)
T ss_pred eeeccccc
Confidence 77664433
No 196
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=69.71 E-value=98 Score=28.95 Aligned_cols=131 Identities=13% Similarity=0.099 Sum_probs=68.9
Q ss_pred eEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceE
Q 016368 215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAA 294 (390)
Q Consensus 215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 294 (390)
.+-++|+.|+. -. ..++--... .-.+++.+-.-|++... ..+.+.+||++.++...--. +.-....
T Consensus 174 tikIwDlatg~----Lk--ltltGhi~~--vr~vavS~rHpYlFs~g--edk~VKCwDLe~nkvIR~Yh----GHlS~V~ 239 (460)
T KOG0285|consen 174 TIKIWDLATGQ----LK--LTLTGHIET--VRGVAVSKRHPYLFSAG--EDKQVKCWDLEYNKVIRHYH----GHLSGVY 239 (460)
T ss_pred eeEEEEcccCe----EE--Eeecchhhe--eeeeeecccCceEEEec--CCCeeEEEechhhhhHHHhc----cccceeE
Confidence 78899999988 32 122210000 12233444445555311 45667899999887543222 1111111
Q ss_pred EEeeC--CeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEE---EECCEEEEEeeCCceEEEEEcCCC
Q 016368 295 STMNE--EELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKIT---AARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 295 ~~~~~--g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~---~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
+..+. ..+.+-||.+..+.+||+.+.. .+..|...+...+-+ ..++.|+-- +.+..|-+||+..+
T Consensus 240 ~L~lhPTldvl~t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~~dpqvit~-S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 240 CLDLHPTLDVLVTGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQPTDPQVITG-SHDSTVRLWDLRAG 309 (460)
T ss_pred EEeccccceeEEecCCcceEEEeeecccc--eEEEecCCCCcceeEEeecCCCceEEe-cCCceEEEeeeccC
Confidence 11133 5566778888889999988753 233344333322222 225666554 55667777777654
No 197
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=68.66 E-value=1.1e+02 Score=29.31 Aligned_cols=132 Identities=10% Similarity=0.091 Sum_probs=68.2
Q ss_pred CCCceecCCCCCCC-CcceEEEEE--C-CEEEEEeccCCCCCCCccCeEEEEEC--CCCccccccEEcccCC-C-CCccc
Q 016368 172 QSNTWFFGPQLSIP-RRWCAMGSV--G-GVVYVASGVGAHYRGDVARSMKKWDL--KSDREDWKWEKKAQLK-D-GRFSR 243 (390)
Q Consensus 172 ~t~~W~~~~~~~~~-r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~~~yd~--~t~~~~~~W~~~~~~~-~-~~~~r 243 (390)
.-.+|+.+.....+ +....+... + ..-+++|-.. .++.. .-++ |+...... . .....
T Consensus 73 ~G~~W~q~~~p~~~~~~L~~V~F~~~d~~~GwAVG~~G-----------~IL~T~DGG~t----W~~~~~~~~~~~~~~~ 137 (398)
T PLN00033 73 QSSEWEQVDLPIDPGVVLLDIAFVPDDPTHGFLLGTRQ-----------TLLETKDGGKT----WVPRSIPSAEDEDFNY 137 (398)
T ss_pred CCCccEEeecCCCCCCceEEEEeccCCCCEEEEEcCCC-----------EEEEEcCCCCC----ceECccCccccccccc
Confidence 34589987533333 234445542 2 3677776532 12222 2345 98854210 0 00000
Q ss_pred cceEEEEECCEEEEEcccCCCCceeEEEeCC--CCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368 244 EAVEAVGFKGNLCMVNLKGNGAKDGAIYNVE--LDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW 321 (390)
Q Consensus 244 ~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~ 321 (390)
...++...++..|++| ..+.+|-.. -++|+.++.....+.......+.-++..++++ ..+.+++=+-....
T Consensus 138 ~l~~v~f~~~~g~~vG------~~G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg-~~G~v~~S~D~G~t 210 (398)
T PLN00033 138 RFNSISFKGKEGWIIG------KPAILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVT-DEGAIYVTSNAGRN 210 (398)
T ss_pred ceeeeEEECCEEEEEc------CceEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEe-ccceEEEECCCCCC
Confidence 0244555677888884 223455554 35999886522122222333331345677776 46677776666678
Q ss_pred eEEc
Q 016368 322 WDEV 325 (390)
Q Consensus 322 W~~i 325 (390)
|+.+
T Consensus 211 W~~~ 214 (398)
T PLN00033 211 WKAA 214 (398)
T ss_pred ceEc
Confidence 9987
No 198
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=68.23 E-value=1.4e+02 Score=30.24 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=24.3
Q ss_pred CeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEc
Q 016368 214 RSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVN 259 (390)
Q Consensus 214 ~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~g 259 (390)
..+|+|+++.+ |-....++.+... .--+.+-. +++++-.|
T Consensus 47 g~IEiwN~~~~-----w~~~~vi~g~~dr-sIE~L~W~e~~RLFS~g 87 (691)
T KOG2048|consen 47 GNIEIWNLSNN-----WFLEPVIHGPEDR-SIESLAWAEGGRLFSSG 87 (691)
T ss_pred CcEEEEccCCC-----ceeeEEEecCCCC-ceeeEEEccCCeEEeec
Confidence 47999999985 7655444332221 12334444 88899886
No 199
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=68.05 E-value=1.6e+02 Score=30.78 Aligned_cols=142 Identities=12% Similarity=0.042 Sum_probs=64.8
Q ss_pred CCCCcEEEeCCCCceecC-CCCCCCCcceEEEEEC--CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC
Q 016368 162 ALASPLAFNPQSNTWFFG-PQLSIPRRWCAMGSVG--GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD 238 (390)
Q Consensus 162 ~~~~~~~~dp~t~~W~~~-~~~~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~ 238 (390)
....+.+||..++.-+.- ..-+..-..-....++ +++.|.+|.++ .+-.||.++...--.|+.-.+.+.
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G--------ilkfw~f~~k~l~~~l~l~~~~~~ 539 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG--------ILKFWDFKKKVLKKSLRLGSSITG 539 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcc--------eEEEEecCCcceeeeeccCCCcce
Confidence 345899999998855432 1111111112223333 46777777765 344455544330000332222222
Q ss_pred CCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECC
Q 016368 239 GRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDAD 318 (390)
Q Consensus 239 ~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~ 318 (390)
....| ..-++++ ..+...+.+||..+.+=...=.+. ..+- ..++...+|+=.+....++.+..||.-
T Consensus 540 iv~hr--------~s~l~a~---~~ddf~I~vvD~~t~kvvR~f~gh-~nri-td~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 540 IVYHR--------VSDLLAI---ALDDFSIRVVDVVTRKVVREFWGH-GNRI-TDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred eeeee--------hhhhhhh---hcCceeEEEEEchhhhhhHHhhcc-ccce-eeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 11111 1112222 113344557887765321110000 1111 122222677777777777788888888
Q ss_pred CCceEE
Q 016368 319 HDWWDE 324 (390)
Q Consensus 319 ~~~W~~ 324 (390)
+..--.
T Consensus 607 t~~lID 612 (910)
T KOG1539|consen 607 TGTLID 612 (910)
T ss_pred Ccceee
Confidence 765443
No 200
>PTZ00420 coronin; Provisional
Probab=67.48 E-value=1.5e+02 Score=30.11 Aligned_cols=143 Identities=11% Similarity=0.170 Sum_probs=67.1
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGS-VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS 242 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~ 242 (390)
..+.+||..+.+-.. .+..+..-.++.. .+|.+++.++.+. .+.+||+.+.. .+..+......
T Consensus 148 gtIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~D~--------~IrIwD~Rsg~------~i~tl~gH~g~ 211 (568)
T PTZ00420 148 SFVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCVGK--------HMHIIDPRKQE------IASSFHIHDGG 211 (568)
T ss_pred CeEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEecCC--------EEEEEECCCCc------EEEEEecccCC
Confidence 467889988764211 1111111122222 2677777766543 78999998865 22222111000
Q ss_pred ccceEEEE-----ECCEEEEEcccC-CCCceeEEEeCCC-CCeEecCCCCCCCCCCceEEE--eeCCeEEEEeCCCCcEE
Q 016368 243 REAVEAVG-----FKGNLCMVNLKG-NGAKDGAIYNVEL-DKWKEMPEGMHAGWNGPAAST--MNEEELYVVNEGKGRLS 313 (390)
Q Consensus 243 r~~~~~~~-----~~g~lyv~gg~g-~~~~~~~~yd~~~-~~W~~~~~~~~~~~~~~~~~~--~~~g~lyv~gg~~~~v~ 313 (390)
+ ...++. .++...+.+|.. .....+.+||+.+ ..-..... . ....+..+.. ...|.+|+.|..++.+.
T Consensus 212 ~-~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-l-d~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 212 K-NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS-I-DNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred c-eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-e-cCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 0 011111 233444443221 1123577899874 22111100 1 1111111111 13588999998888999
Q ss_pred EEECCCCceEEc
Q 016368 314 KYDADHDWWDEV 325 (390)
Q Consensus 314 ~yd~~~~~W~~i 325 (390)
.|+...+.-..+
T Consensus 289 ~~e~~~~~~~~l 300 (568)
T PTZ00420 289 YYQHSLGSIRKV 300 (568)
T ss_pred EEEccCCcEEee
Confidence 998876643333
No 201
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=67.38 E-value=47 Score=31.70 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=45.1
Q ss_pred eCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368 298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
.||.||..|..++.+-.||.+... .+...|..........+ +|.-.+.+.++..|.+||+.+.
T Consensus 357 pDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 357 PDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred CCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 588888888889999999998766 66666665554444444 4554455455556999999875
No 202
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=66.59 E-value=1e+02 Score=28.00 Aligned_cols=178 Identities=11% Similarity=0.055 Sum_probs=94.1
Q ss_pred CCcEEEeCCCCceec----CCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC
Q 016368 164 ASPLAFNPQSNTWFF----GPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK 237 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~----~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~ 237 (390)
|.+-+|+..+..=.. ...++....+.+++.+ ++.|.-..|. .+.-.+|+++.+ ++..+.
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD---------~TCalWDie~g~------~~~~f~ 183 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD---------MTCALWDIETGQ------QTQVFH 183 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC---------ceEEEEEcccce------EEEEec
Confidence 457788887653322 2233444455555544 4444443332 266778998887 222221
Q ss_pred -CCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368 238 -DGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYD 316 (390)
Q Consensus 238 -~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd 316 (390)
..... ...+..-.+++.|+-|+ ..+....+|.....-.+.=. -...-....... .+|.-|+-|..++....||
T Consensus 184 GH~gDV-~slsl~p~~~ntFvSg~---cD~~aklWD~R~~~c~qtF~-ghesDINsv~ff-P~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 184 GHTGDV-MSLSLSPSDGNTFVSGG---CDKSAKLWDVRSGQCVQTFE-GHESDINSVRFF-PSGDAFATGSDDATCRLYD 257 (343)
T ss_pred CCcccE-EEEecCCCCCCeEEecc---cccceeeeeccCcceeEeec-ccccccceEEEc-cCCCeeeecCCCceeEEEe
Confidence 10000 00111112778888851 12345567766553221111 001111222222 6888888888888999999
Q ss_pred CCCCceEEccccccccccee-E-EEECCEEEEEeeCCceEEEEEcCCC
Q 016368 317 ADHDWWDEVIELAELKGAEK-I-TAARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 317 ~~~~~W~~i~~~p~~r~~~~-~-~~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
...+.=-.+-+-+..-.... + ....|+|.+.|..+..+.+||.-+.
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence 98876444433222222222 2 2237899999888889999998664
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.56 E-value=1.3e+02 Score=32.50 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=59.0
Q ss_pred ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCC-Cc-eEEE-eeCCeEEEEeCCCCcEEEEECCC-------C
Q 016368 251 FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWN-GP-AAST-MNEEELYVVNEGKGRLSKYDADH-------D 320 (390)
Q Consensus 251 ~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~-~~~~-~~~g~lyv~gg~~~~v~~yd~~~-------~ 320 (390)
..|++|+-| +.+.+-++|..+++=. .+ +|.+.. .. ++.. ..+|.+++.|-.+|.+..||... +
T Consensus 1176 ~~G~Ll~tG----d~r~IRIWDa~~E~~~--~d-iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1176 QSGHLLVTG----DVRSIRIWDAHKEQVV--AD-IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred hCCeEEecC----CeeEEEEEecccceeE--ee-cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 488999986 5677789998866422 22 222211 11 1111 46789999999999999999753 2
Q ss_pred ceEEcccccccccceeEEEECCEEEEE-eeCCceEEEEEcCCC
Q 016368 321 WWDEVIELAELKGAEKITAARGRVCAV-CENGERIMVVDVLAS 362 (390)
Q Consensus 321 ~W~~i~~~p~~r~~~~~~~~~g~l~i~-g~~~~~v~~~d~~~~ 362 (390)
.|++-...+. ..+.-.--+|..-++ |..+++|.++|+..+
T Consensus 1249 ~~R~h~~~~~--Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1249 VYREHNDVEP--IVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred eecccCCccc--ceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 3544432211 111111112333233 344679999999885
No 204
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=66.10 E-value=72 Score=26.09 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=45.4
Q ss_pred EEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc-cccceEE-EEECCEEEEEcccCCCC--ce
Q 016368 192 GSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF-SREAVEA-VGFKGNLCMVNLKGNGA--KD 267 (390)
Q Consensus 192 ~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~-~r~~~~~-~~~~g~lyv~gg~g~~~--~~ 267 (390)
+.++|.+|-++..... .....+..||..+.+ .+...++|.... ....... ++.++++.++.-. ... .+
T Consensus 2 V~vnG~~hW~~~~~~~---~~~~~IlsFDl~~E~----F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~-~~~~~~~ 73 (164)
T PF07734_consen 2 VFVNGALHWLAYDENN---DEKDFILSFDLSTEK----FGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC-DETSKIE 73 (164)
T ss_pred EEECCEEEeeEEecCC---CCceEEEEEeccccc----cCCEECCCCccCccCCEEEEEEecCCEEEEEEec-cCCccEE
Confidence 5679999998876542 122269999999999 733333332221 1112333 2337788877211 111 23
Q ss_pred eEE---EeCCCCCeEecC
Q 016368 268 GAI---YNVELDKWKEMP 282 (390)
Q Consensus 268 ~~~---yd~~~~~W~~~~ 282 (390)
+++ |+-...+|+++-
T Consensus 74 IWvm~~~~~~~~SWtK~~ 91 (164)
T PF07734_consen 74 IWVMKKYGYGKESWTKLF 91 (164)
T ss_pred EEEEeeeccCcceEEEEE
Confidence 333 333367898864
No 205
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=65.90 E-value=82 Score=26.65 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=36.7
Q ss_pred CCEEEEEcccCCCCceeEEEeCCCCCeEec-----CCCCC-CCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368 252 KGNLCMVNLKGNGAKDGAIYNVELDKWKEM-----PEGMH-AGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW 321 (390)
Q Consensus 252 ~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~-----~~~~~-~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~ 321 (390)
++++|++ .+..-+.||..+++-..- ...++ .+..-.++....+|++|++-| ...++||..+.+
T Consensus 110 ~~~~yfF-----kg~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~g--~~y~~~d~~~~~ 178 (194)
T cd00094 110 NGKTYFF-----KGDKYWRYDEKTQKMDPGYPKLIETDFPGVPDKVDAAFRWLDGYYYFFKG--DQYWRFDPRSKE 178 (194)
T ss_pred CCEEEEE-----eCCEEEEEeCCCccccCCCCcchhhcCCCcCCCcceeEEeCCCcEEEEEC--CEEEEEeCccce
Confidence 6899999 456677888765543211 10010 111112222213489999976 589999988765
No 206
>PF13013 F-box-like_2: F-box-like domain
Probab=64.97 E-value=9.3 Score=29.13 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHhcCC
Q 016368 34 LPGLPNHLADRCLSSLP 50 (390)
Q Consensus 34 ~~~LP~dl~~~iL~rLP 50 (390)
+..||+||+..|+-.-.
T Consensus 22 l~DLP~ELl~~I~~~C~ 38 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCN 38 (109)
T ss_pred hhhChHHHHHHHHhhcC
Confidence 77899999999998877
No 207
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=64.96 E-value=1.2e+02 Score=28.09 Aligned_cols=186 Identities=17% Similarity=0.201 Sum_probs=81.2
Q ss_pred eEEeecCeEEEEEeecCCCCC---CCCCcEEEeC-CCCceecCCCC----C-CCC---cceEEEEECCEEEEEeccCCCC
Q 016368 141 QSLGVRNNLVLIAATTPHFLP---ALASPLAFNP-QSNTWFFGPQL----S-IPR---RWCAMGSVGGVVYVASGVGAHY 208 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~~~---~~~~~~~~dp-~t~~W~~~~~~----~-~~r---~~~~~~~~~~~lyv~GG~~~~~ 208 (390)
+.+.+++.++.+....-.... ...-+..+.. ...+|+..-.. . ..| .....++-+++||++-|.....
T Consensus 3 SLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~ 82 (310)
T PF13859_consen 3 SLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRS 82 (310)
T ss_dssp EEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS-
T ss_pred CEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEecc
Confidence 566677777777765321101 1111222332 34478653211 1 112 3455666699999987764431
Q ss_pred CCCccCeEEEEECCCCccccccEEcccCCCCCcc------ccceEEEEE-CCEEEEE--cccCCCC--ceeEEEeCC-CC
Q 016368 209 RGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS------REAVEAVGF-KGNLCMV--NLKGNGA--KDGAIYNVE-LD 276 (390)
Q Consensus 209 ~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~------r~~~~~~~~-~g~lyv~--gg~g~~~--~~~~~yd~~-~~ 276 (390)
.....-.+..+-...+. ..|.....++..... ..+-+.++. ||.|.+- +....+. ....+|... ..
T Consensus 83 ~~~~~~~llLvks~~~g--~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~ 160 (310)
T PF13859_consen 83 AGADDWGLLLVKSTDGG--IKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGK 160 (310)
T ss_dssp -SSTTEEEEEEEEESSS--SEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTS
T ss_pred ccccccceeeeeccCCc--ceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCcc
Confidence 12222334444322221 129887766543221 001222222 4443321 1111122 334578877 66
Q ss_pred CeEecCCCCCCCCCCceEEEee-CCeEEEEeCCCC-cEEEE--ECCCCceEE-ccccc
Q 016368 277 KWKEMPEGMHAGWNGPAASTMN-EEELYVVNEGKG-RLSKY--DADHDWWDE-VIELA 329 (390)
Q Consensus 277 ~W~~~~~~~~~~~~~~~~~~~~-~g~lyv~gg~~~-~v~~y--d~~~~~W~~-i~~~p 329 (390)
+|.--.-..+.....++++. . +|+|.++...+. .-.+| .-...+|++ +.+++
T Consensus 161 ~W~lskg~s~~gC~~psv~E-We~gkLlM~~~c~~g~rrVYeS~DmG~tWtea~gtls 217 (310)
T PF13859_consen 161 TWKLSKGMSPAGCSDPSVVE-WEDGKLLMMTACDDGRRRVYESGDMGTTWTEALGTLS 217 (310)
T ss_dssp S-EE-S----TT-EEEEEEE-E-TTEEEEEEE-TTS---EEEESSTTSS-EE-TTTTT
T ss_pred ceEeccccCCCCcceEEEEe-ccCCeeEEEEecccceEEEEEEcccceehhhccCccc
Confidence 99976652345555666666 7 899999987554 23444 334578998 66666
No 208
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=64.29 E-value=86 Score=32.11 Aligned_cols=109 Identities=10% Similarity=0.042 Sum_probs=66.5
Q ss_pred EEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccc
Q 016368 248 AVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIE 327 (390)
Q Consensus 248 ~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~ 327 (390)
+.++-+.-|+.+| ...+.+-.+|..++.=..+=. .....-.+++...+|+-...|+.++.|..||..+.+ .+..
T Consensus 541 v~FHPNs~Y~aTG--SsD~tVRlWDv~~G~~VRiF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~--~v~~ 614 (707)
T KOG0263|consen 541 VSFHPNSNYVATG--SSDRTVRLWDVSTGNSVRIFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS--LVKQ 614 (707)
T ss_pred EEECCcccccccC--CCCceEEEEEcCCCcEEEEec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc--chhh
Confidence 4456677787763 233456677777664333211 111122233334678877888888999999988743 2333
Q ss_pred ccccccc-eeEE-EECCEEEEEeeCCceEEEEEcCCC
Q 016368 328 LAELKGA-EKIT-AARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 328 ~p~~r~~-~~~~-~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
+...... +++. ..+|.|.+.|+.+++|.+||+...
T Consensus 615 l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 615 LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 3333332 2332 348999999999999999998764
No 209
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=64.27 E-value=1.3e+02 Score=28.50 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=32.2
Q ss_pred CCCCCcHHHHHHHHhcCC----chhhHhhhHhHHHhhcC
Q 016368 33 LLPGLPNHLADRCLSSLP----PALLFSVCHSWRRLLYS 67 (390)
Q Consensus 33 ~~~~LP~dl~~~iL~rLP----l~~~r~Vck~W~~l~~s 67 (390)
.|++||+||+..|..+|| +.++|+||+.||+.+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 478999999999999999 88999999999998875
No 210
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.46 E-value=1.7e+02 Score=29.55 Aligned_cols=101 Identities=7% Similarity=0.115 Sum_probs=53.9
Q ss_pred EEeCCCCCeEecCCCCCCCCCCc-----eEEE-eeCCeEEEEeCCCC-cEEEEECCCCceEEcccccccccceeEEEECC
Q 016368 270 IYNVELDKWKEMPEGMHAGWNGP-----AAST-MNEEELYVVNEGKG-RLSKYDADHDWWDEVIELAELKGAEKITAARG 342 (390)
Q Consensus 270 ~yd~~~~~W~~~~~~~~~~~~~~-----~~~~-~~~g~lyv~gg~~~-~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g 342 (390)
..|-+-+.|+.-.+.+.....+| ++.. ..+++-|++.|.+. .+-+||..|.+..+ .+-.+..+.+++....
T Consensus 160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~--TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ--TLEGHTNNVSFVFFHP 237 (794)
T ss_pred eccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH--HhhcccccceEEEecC
Confidence 55555566776544222111111 1111 35678888887655 66677777655433 3333444555555544
Q ss_pred E--EEEEeeCCceEEEEEcCCC---------CCcceEecCC
Q 016368 343 R--VCAVCENGERIMVVDVLAS---------PARAWLVDPP 372 (390)
Q Consensus 343 ~--l~i~g~~~~~v~~~d~~~~---------~~~~W~~~~p 372 (390)
. |.|-|+.+..+-+|+-.+. -.+.|-+...
T Consensus 238 ~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~ 278 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAH 278 (794)
T ss_pred CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeec
Confidence 3 5555555666777765552 2466886533
No 211
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=63.44 E-value=59 Score=32.74 Aligned_cols=95 Identities=8% Similarity=-0.002 Sum_probs=49.5
Q ss_pred eEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC----cEEEEECCCCceEEcccccccccceeEEE----
Q 016368 268 GAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG----RLSKYDADHDWWDEVIELAELKGAEKITA---- 339 (390)
Q Consensus 268 ~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~----~v~~yd~~~~~W~~i~~~p~~r~~~~~~~---- 339 (390)
..+|++.+..=....-.-+.+..++-+..+++|++.++-|++. .+.+||-.+-.-..+......-....++-
T Consensus 744 ~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~ 823 (1012)
T KOG1445|consen 744 LRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDY 823 (1012)
T ss_pred EEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccC
Confidence 3467766543111111123444445444459999999999765 77888877533222211100000001111
Q ss_pred ECCEEEEEeeCCceEEEEEcCCC
Q 016368 340 ARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 340 ~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
-.+.+++-|.++..|++|++--+
T Consensus 824 Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 824 DSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred CCceEEEecCCCceEEEEEecCC
Confidence 13567777777777888887554
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=63.06 E-value=1.5e+02 Score=28.68 Aligned_cols=161 Identities=9% Similarity=-0.003 Sum_probs=75.9
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEEECCE-EEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGV-VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS 242 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~ 242 (390)
..++++|..+++-+.+...+.... .....-+|+ |++....++ ...++.+|..++. .+.+..-....
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~----~~~lt~~~~~~-- 294 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDG------VLNIYVMGANGGT----PSQLTSGAGNN-- 294 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCC------cEEEEEEECCCCC----eEeeccCCCCc--
Confidence 468999998876655544332111 111122554 444332222 2358888988877 66654322111
Q ss_pred ccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368 243 REAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW 321 (390)
Q Consensus 243 r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~ 321 (390)
......-+|+ |++.+ ...+...++.+|..+..=+.+.. .. ...... .+|+..++.+. ..++.+|..+..
T Consensus 295 --~~~~wSpDG~~i~f~s-~~~g~~~I~~~~~~~~~~~~l~~---~~-~~~~~S--pDG~~ia~~~~-~~i~~~Dl~~g~ 364 (429)
T PRK01742 295 --TEPSWSPDGQSILFTS-DRSGSPQVYRMSASGGGASLVGG---RG-YSAQIS--ADGKTLVMING-DNVVKQDLTSGS 364 (429)
T ss_pred --CCEEECCCCCEEEEEE-CCCCCceEEEEECCCCCeEEecC---CC-CCccCC--CCCCEEEEEcC-CCEEEEECCCCC
Confidence 1222234555 44442 11122344455554443233321 11 222222 45554444433 467789999888
Q ss_pred eEEcccccccccceeE-EEECCEEEEEeeC
Q 016368 322 WDEVIELAELKGAEKI-TAARGRVCAVCEN 350 (390)
Q Consensus 322 W~~i~~~p~~r~~~~~-~~~~g~l~i~g~~ 350 (390)
+..+..-. . .... ..-+|+..+++..
T Consensus 365 ~~~lt~~~--~-~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 365 TEVLSSTF--L-DESPSISPNGIMIIYSST 391 (429)
T ss_pred eEEecCCC--C-CCCceECCCCCEEEEEEc
Confidence 87664211 1 1122 2336666665544
No 213
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=62.96 E-value=2.1e+02 Score=30.26 Aligned_cols=165 Identities=17% Similarity=0.256 Sum_probs=78.5
Q ss_pred eEEEEECCEEEEEeccCCCC-CCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCce
Q 016368 189 CAMGSVGGVVYVASGVGAHY-RGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKD 267 (390)
Q Consensus 189 ~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~ 267 (390)
.+-++.++.||+-+...+.. .....-.+..||.+|++..|+|....+-... ...+|..|..|+. ..-.
T Consensus 310 s~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~---------~~~~g~~~~~gg~--n~W~ 378 (764)
T TIGR03074 310 SPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTA---------PPAPGETYTRNTP--NSWS 378 (764)
T ss_pred cCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCccc---------CCCCCCEeccCCC--CccC
Confidence 34456688877743322210 1123457899999999866444433221111 1136667776411 1123
Q ss_pred eEEEeCCCCCeEe-cCCCCCCCCCC---ceEEEeeCCeEEEEeCCCC-cEEEEEC-CCCceEEcccccccccceeEEEEC
Q 016368 268 GAIYNVELDKWKE-MPEGMHAGWNG---PAASTMNEEELYVVNEGKG-RLSKYDA-DHDWWDEVIELAELKGAEKITAAR 341 (390)
Q Consensus 268 ~~~yd~~~~~W~~-~~~~~~~~~~~---~~~~~~~~g~lyv~gg~~~-~v~~yd~-~~~~W~~i~~~p~~r~~~~~~~~~ 341 (390)
...||++++.--. .....|..... ...- ...+.|+.+.-.+| ..|.|.. ..+.|..-. +....-..+...+
T Consensus 379 ~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n-~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~--~~~p~L~d~~~~~ 455 (764)
T TIGR03074 379 VASYDEKLGLVYLPMGNQTPDQWGGDRTPADE-KYSSSLVALDATTGKERWVFQTVHHDLWDMDV--PAQPSLVDLPDAD 455 (764)
T ss_pred ceEEcCCCCeEEEeCCCccccccCCccccCcc-cccceEEEEeCCCCceEEEecccCCccccccc--cCCceEEeeecCC
Confidence 4578888775321 11111110000 1111 14566666666555 5677765 346675422 1111111122224
Q ss_pred CE---EEEEeeCCceEEEEEcCCCCCcceE
Q 016368 342 GR---VCAVCENGERIMVVDVLASPARAWL 368 (390)
Q Consensus 342 g~---l~i~g~~~~~v~~~d~~~~~~~~W~ 368 (390)
|+ +.+.+..+..++++|-.+.+. .|.
T Consensus 456 G~~~~~v~~~~K~G~~~vlDr~tG~~-l~~ 484 (764)
T TIGR03074 456 GTTVPALVAPTKQGQIYVLDRRTGEP-IVP 484 (764)
T ss_pred CcEeeEEEEECCCCEEEEEECCCCCE-Eee
Confidence 52 444445555788888876532 454
No 214
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=61.92 E-value=87 Score=32.06 Aligned_cols=104 Identities=12% Similarity=0.109 Sum_probs=57.2
Q ss_pred CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeC
Q 016368 195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNV 273 (390)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~ 273 (390)
.+.-|++.|..+ ..+.++|..++. =.++=.-...+. .+.++ .+|+..+.| .....+.+||+
T Consensus 545 PNs~Y~aTGSsD-------~tVRlWDv~~G~----~VRiF~GH~~~V----~al~~Sp~Gr~LaSg---~ed~~I~iWDl 606 (707)
T KOG0263|consen 545 PNSNYVATGSSD-------RTVRLWDVSTGN----SVRIFTGHKGPV----TALAFSPCGRYLASG---DEDGLIKIWDL 606 (707)
T ss_pred CcccccccCCCC-------ceEEEEEcCCCc----EEEEecCCCCce----EEEEEcCCCceEeec---ccCCcEEEEEc
Confidence 455677766443 477788888776 322222111111 33333 355544442 12344678998
Q ss_pred CCCCeE-ecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCC
Q 016368 274 ELDKWK-EMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADH 319 (390)
Q Consensus 274 ~~~~W~-~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~ 319 (390)
.+.+=- ++.. ..-...++....+|.+++.||.++.+..||...
T Consensus 607 ~~~~~v~~l~~---Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 607 ANGSLVKQLKG---HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCcchhhhhc---ccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 875421 1111 111222333348999999999999999988763
No 215
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=61.85 E-value=1.4e+02 Score=28.07 Aligned_cols=102 Identities=10% Similarity=-0.046 Sum_probs=55.0
Q ss_pred eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEee-c--CCCCCCCCCcEEEeCCCCce
Q 016368 100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAAT-T--PHFLPALASPLAFNPQSNTW 176 (390)
Q Consensus 100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~-~--~~~~~~~~~~~~~dp~t~~W 176 (390)
..++++|..+.+-...-+....|+ ..+.-+++.+|+.-. . .......+.+.+||+.|.+-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-----------------~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-----------------PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-----------------eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 568899998855433222222133 333344544444322 1 11113457799999999976
Q ss_pred ec-CCCCCCCCcc-----eEEEE-ECC-EEEEEeccCCCCCCCccCeEEEEECCCCc
Q 016368 177 FF-GPQLSIPRRW-----CAMGS-VGG-VVYVASGVGAHYRGDVARSMKKWDLKSDR 225 (390)
Q Consensus 177 ~~-~~~~~~~r~~-----~~~~~-~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~ 225 (390)
.. ++-.+.||.. ...+. -+| .|||.- -...+.+-+.|..+++
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-------~~p~~~V~VvD~~~~k 139 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-------FSPSPAVGVVDLEGKA 139 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEec-------CCCCCEEEEEECCCCc
Confidence 53 4332344411 12222 244 577752 1235689999999987
No 216
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=61.14 E-value=7.6 Score=36.90 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=31.9
Q ss_pred CCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCC
Q 016368 36 GLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPY 69 (390)
Q Consensus 36 ~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~ 69 (390)
.||.|++..+++.|- +++.+.+|+-|+.++.+..
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 599999999999999 9999999999999999876
No 217
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=60.43 E-value=48 Score=24.25 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=28.6
Q ss_pred CcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeC-CceEEEEEcC
Q 016368 310 GRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCEN-GERIMVVDVL 360 (390)
Q Consensus 310 ~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~-~~~v~~~d~~ 360 (390)
|.+++|||.+++.+.+.. ....+-+++.. ++.-.++.+. ...|.-|-++
T Consensus 37 GRll~ydp~t~~~~vl~~--~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLD--GLYFPNGVALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp EEEEEEETTTTEEEEEEE--EESSEEEEEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred cCEEEEECCCCeEEEehh--CCCccCeEEEcCCCCEEEEEeccCceEEEEEEe
Confidence 389999999999987753 23344456665 3333333333 3456655544
No 218
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=60.04 E-value=2.2e+02 Score=29.56 Aligned_cols=174 Identities=13% Similarity=0.122 Sum_probs=87.6
Q ss_pred CCCCcEEEeCCCCceecCCCCCCCC-cceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368 162 ALASPLAFNPQSNTWFFGPQLSIPR-RWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR 240 (390)
Q Consensus 162 ~~~~~~~~dp~t~~W~~~~~~~~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~ 240 (390)
...++.+||..++.-.+.-.....+ .-++....++.+.++-|+.+. .+.+|+..++. +.-+....
T Consensus 41 a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDG-------sVqif~~~s~~-------~~~tfngH 106 (888)
T KOG0306|consen 41 ALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADG-------SVQIFSLESEE-------ILITFNGH 106 (888)
T ss_pred ccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCc-------eEEeeccCCCc-------eeeeeccc
Confidence 4567889999988543322222223 233444557777666677552 67787777655 11111110
Q ss_pred ccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCC--eEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368 241 FSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDK--WKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYD 316 (390)
Q Consensus 241 ~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd 316 (390)
-. +.....+ .|...+-|+ -..++.+||...++ .+--.. ... .....+. -++.+.+--+.++.+-.||
T Consensus 107 K~--AVt~l~fd~~G~rlaSGs---kDt~IIvwDlV~E~Gl~rL~GH--kd~-iT~~~F~-~~~~~lvS~sKDs~iK~Wd 177 (888)
T KOG0306|consen 107 KA--AVTTLKFDKIGTRLASGS---KDTDIIVWDLVGEEGLFRLRGH--KDS-ITQALFL-NGDSFLVSVSKDSMIKFWD 177 (888)
T ss_pred cc--ceEEEEEcccCceEeecC---CCccEEEEEeccceeeEEeecc--hHH-HhHHhcc-CCCeEEEEeccCceEEEEe
Confidence 00 1111122 333444421 12334578875432 222111 000 0111221 3467777777788888999
Q ss_pred CCCCceEEccccccccc-ceeEEEECCEEEEEeeCCceEEEEEcCC
Q 016368 317 ADHDWWDEVIELAELKG-AEKITAARGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 317 ~~~~~W~~i~~~p~~r~-~~~~~~~~g~l~i~g~~~~~v~~~d~~~ 361 (390)
.++...-+.. -..|. -.+++..+ ++.|.++.+..+-+|++.-
T Consensus 178 L~tqhCf~Th--vd~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L~~ 220 (888)
T KOG0306|consen 178 LETQHCFETH--VDHRGEIWALVLDE-KLLVTAGTDSELKVWELAF 220 (888)
T ss_pred cccceeeeEE--ecccceEEEEEEec-ceEEEEecCCceEEEEeec
Confidence 9976544432 12333 23555555 6777766666777777743
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=59.38 E-value=45 Score=31.66 Aligned_cols=92 Identities=20% Similarity=0.160 Sum_probs=51.0
Q ss_pred CCceeEEEeCCCCC-eEecCCCCCCCCCCce-EEEeeCC-eEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE
Q 016368 264 GAKDGAIYNVELDK-WKEMPEGMHAGWNGPA-ASTMNEE-ELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA 340 (390)
Q Consensus 264 ~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~-~~~~~~g-~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~ 340 (390)
+...+.+.|.++.+ -.+++. . ...|. .....+| .+|+.+ .++.+-++|+.+.+ .+.+++......+++..
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~-~---~~~h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~~~--~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPT-G---GAPHAGLKFSPDGRYLYVAN-RDGTVSVIDLATGK--VVATIKVGGNPRGIAVS 86 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE--S---TTEEEEEE-TT-SSEEEEEE-TTSEEEEEETTSSS--EEEEEE-SSEEEEEEE-
T ss_pred CCCEEEEEECCCCeEEEEEcC-C---CCceeEEEecCCCCEEEEEc-CCCeEEEEECCccc--EEEEEecCCCcceEEEc
Confidence 34556788888765 233333 1 11122 2222444 577775 57899999999876 55556555555565554
Q ss_pred -CCEEEEE-eeCCceEEEEEcCCC
Q 016368 341 -RGRVCAV-CENGERIMVVDVLAS 362 (390)
Q Consensus 341 -~g~l~i~-g~~~~~v~~~d~~~~ 362 (390)
+|+..++ ....+.+.++|..+.
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tl 110 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETL 110 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT-
T ss_pred CCCCEEEEEecCCCceeEeccccc
Confidence 5554444 344668888887664
No 220
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=59.20 E-value=1.7e+02 Score=28.15 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=21.8
Q ss_pred eCCeEEEEeCCCCcEEEEECCCCceEEcccc
Q 016368 298 NEEELYVVNEGKGRLSKYDADHDWWDEVIEL 328 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~ 328 (390)
.++.+|++|+ +.+|+||. +.|..++++
T Consensus 574 i~dylY~vg~--~ev~~lde--nswe~Vge~ 600 (603)
T COG4880 574 IKDYLYLVGG--NEVWKLDE--NSWEVVGEA 600 (603)
T ss_pred ecceEEEecc--ceeEEecc--chHhhhhhe
Confidence 8999999997 57888875 469888754
No 221
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=59.11 E-value=1.3e+02 Score=26.65 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=49.7
Q ss_pred CCeEEEEeCCCC-cEEEEEC----CCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368 299 EEELYVVNEGKG-RLSKYDA----DHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 299 ~g~lyv~gg~~~-~v~~yd~----~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
++++|++....+ .+..|.. ....|...-.+|..-...+-++.+|.+|.-..+...+..||+.+.
T Consensus 30 ~~r~~~~~~~~~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~~t~~ivky~l~~~ 98 (249)
T KOG3545|consen 30 DDRIYVMNYFDGLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKAGTRNIIKYDLETR 98 (249)
T ss_pred cCceEEeccccCceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeeccCCcceEEEEeecc
Confidence 577888865554 6667754 445677888888887888899999999998777778999998874
No 222
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=58.89 E-value=19 Score=21.41 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=16.9
Q ss_pred eEEEECCEEEEEeeCCceEEEEEcCC
Q 016368 336 KITAARGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 336 ~~~~~~g~l~i~g~~~~~v~~~d~~~ 361 (390)
+.++.+|.||+. ..+..++.+|..+
T Consensus 16 ~~~v~~g~vyv~-~~dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVG-TGDGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE--TTSEEEEEETT-
T ss_pred CCEEECCEEEEE-cCCCEEEEEeCCC
Confidence 456678888887 5567999999763
No 223
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=57.92 E-value=1.3e+02 Score=26.21 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=50.7
Q ss_pred CCCCCceEEE-eeCCeEEEEeCCCCcEEEEECCCCceEEccccccc-----ccceeEEEE--CCEEEEEeeCCceEEEEE
Q 016368 287 AGWNGPAAST-MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAEL-----KGAEKITAA--RGRVCAVCENGERIMVVD 358 (390)
Q Consensus 287 ~~~~~~~~~~-~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~-----r~~~~~~~~--~g~l~i~g~~~~~v~~~d 358 (390)
.+..++.++. ..+|-|++-|..+..+..||..-+.-...-.-... ..+.+.+.+ .|++.+-|..+.+.++||
T Consensus 180 sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 180 SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 3445555543 47999999999898999998876655443211111 122233333 689999887788899999
Q ss_pred cCCC
Q 016368 359 VLAS 362 (390)
Q Consensus 359 ~~~~ 362 (390)
+..+
T Consensus 260 irg~ 263 (350)
T KOG0641|consen 260 IRGG 263 (350)
T ss_pred eeCC
Confidence 9876
No 224
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=56.03 E-value=2e+02 Score=27.92 Aligned_cols=102 Identities=12% Similarity=0.128 Sum_probs=57.2
Q ss_pred CeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCce
Q 016368 214 RSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPA 293 (390)
Q Consensus 214 ~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~ 293 (390)
..++.+|..++. =..+.+.+..- ......-+|+-+++.....+..+++++|+.+++=..+.. ....-..++
T Consensus 218 ~~i~~~~l~~g~----~~~i~~~~g~~----~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi~~~Ps 288 (425)
T COG0823 218 PRIYYLDLNTGK----RPVILNFNGNN----GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGINTSPS 288 (425)
T ss_pred ceEEEEeccCCc----cceeeccCCcc----CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCccccCcc
Confidence 356777777776 44444432211 122334566666655445567788899998876333443 212222444
Q ss_pred EEEeeCCeEEEEeC-CCC--cEEEEECCCCceEEcc
Q 016368 294 ASTMNEEELYVVNE-GKG--RLSKYDADHDWWDEVI 326 (390)
Q Consensus 294 ~~~~~~g~lyv~gg-~~~--~v~~yd~~~~~W~~i~ 326 (390)
.. .+|+-+++.. ..+ .+++||.+...=+.+.
T Consensus 289 ~s--pdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 289 WS--PDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred CC--CCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 44 5555444443 333 8999999877655554
No 225
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=55.77 E-value=1.9e+02 Score=27.60 Aligned_cols=186 Identities=14% Similarity=0.140 Sum_probs=94.9
Q ss_pred CCCcEEEeCCCCceecCCCCCCCCcceE-EEEE-CCEEEEEeccCCCCC---CCccCeEEEEECCCCccccccE--Eccc
Q 016368 163 LASPLAFNPQSNTWFFGPQLSIPRRWCA-MGSV-GGVVYVASGVGAHYR---GDVARSMKKWDLKSDREDWKWE--KKAQ 235 (390)
Q Consensus 163 ~~~~~~~dp~t~~W~~~~~~~~~r~~~~-~~~~-~~~lyv~GG~~~~~~---~~~~~~~~~yd~~t~~~~~~W~--~~~~ 235 (390)
...+.++|..+++... .. .....+. ++-. +++.++....+.... ......++.+...+.. -+ .+-.
T Consensus 149 ~~~l~v~Dl~tg~~l~--d~-i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~----~~d~lvfe 221 (414)
T PF02897_consen 149 WYTLRVFDLETGKFLP--DG-IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ----SEDELVFE 221 (414)
T ss_dssp EEEEEEEETTTTEEEE--EE-EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G----GG-EEEEC
T ss_pred eEEEEEEECCCCcCcC--Cc-ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh----HhCeeEEe
Confidence 3468999999994432 11 1122222 3333 334444444433100 1225678888888876 33 2222
Q ss_pred CCCCCccccceEE-EEECCEEEEEcccCCCC-ceeEEEeCCCC-----CeEecCCCCCCCCCCceEEEeeCCeEEEEeCC
Q 016368 236 LKDGRFSREAVEA-VGFKGNLCMVNLKGNGA-KDGAIYNVELD-----KWKEMPEGMHAGWNGPAASTMNEEELYVVNEG 308 (390)
Q Consensus 236 ~~~~~~~r~~~~~-~~~~g~lyv~gg~g~~~-~~~~~yd~~~~-----~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~ 308 (390)
.+..... ...+ ..-+++..++.-..... ......|.... .|..+.. . .......+.. .++.+|+....
T Consensus 222 ~~~~~~~--~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~-~-~~~~~~~v~~-~~~~~yi~Tn~ 296 (414)
T PF02897_consen 222 EPDEPFW--FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP-R-EDGVEYYVDH-HGDRLYILTND 296 (414)
T ss_dssp -TTCTTS--EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE-S-SSS-EEEEEE-ETTEEEEEE-T
T ss_pred ecCCCcE--EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC-C-CCceEEEEEc-cCCEEEEeeCC
Confidence 2222110 1222 23455544442221122 45567888764 7887755 2 1112223333 68899988753
Q ss_pred ---CCcEEEEECCCCc---eE-EcccccccccceeEEEECCEEEEEeeCC--ceEEEEEcC
Q 016368 309 ---KGRLSKYDADHDW---WD-EVIELAELKGAEKITAARGRVCAVCENG--ERIMVVDVL 360 (390)
Q Consensus 309 ---~~~v~~yd~~~~~---W~-~i~~~p~~r~~~~~~~~~g~l~i~g~~~--~~v~~~d~~ 360 (390)
.+.+..++..... |. .+.+-.....--.+...++.|++....+ ..+.++|..
T Consensus 297 ~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 297 DAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp T-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred CCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 3489999988765 66 3432222223345666788888875332 378899988
No 226
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.74 E-value=1.6e+02 Score=26.22 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=19.7
Q ss_pred eEEEEeCCCCcEEEEECCCCceEEccccc
Q 016368 301 ELYVVNEGKGRLSKYDADHDWWDEVIELA 329 (390)
Q Consensus 301 ~lyv~gg~~~~v~~yd~~~~~W~~i~~~p 329 (390)
+-++-||.++.+-+++...++|..-..+.
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~ 204 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKLERTLE 204 (299)
T ss_pred ceeeccCCccceeeeecCCcchhhhhhhh
Confidence 55788888886666666666887655443
No 227
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=52.89 E-value=1.7e+02 Score=26.01 Aligned_cols=146 Identities=11% Similarity=0.122 Sum_probs=71.7
Q ss_pred EECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC-CccccceEEEE-ECCEEEEEcccCCCCceeEE
Q 016368 193 SVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG-RFSREAVEAVG-FKGNLCMVNLKGNGAKDGAI 270 (390)
Q Consensus 193 ~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~-~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~ 270 (390)
.-+|.+++..-... .........|....+.. |+.....+.. ... ..+.+. -+|+++++--..........
T Consensus 116 ~~~G~l~~~~~~~~---~~~~~~~~~~S~D~G~t---W~~~~~~~~~~~~~--e~~~~~~~dG~l~~~~R~~~~~~~~~~ 187 (275)
T PF13088_consen 116 LPDGRLIAPYYHES---GGSFSAFVYYSDDGGKT---WSSGSPIPDGQGEC--EPSIVELPDGRLLAVFRTEGNDDIYIS 187 (275)
T ss_dssp ECTTEEEEEEEEES---SCEEEEEEEEESSTTSS---EEEEEECECSEEEE--EEEEEEETTSEEEEEEEECSSTEEEEE
T ss_pred ecCCCEEEEEeecc---ccCcceEEEEeCCCCce---eeccccccccCCcc--eeEEEECCCCcEEEEEEccCCCcEEEE
Confidence 33788888721111 12233444455554432 9887765321 110 233332 47788887422111112233
Q ss_pred EeCC-CCCeEecCC-CCCCCCCCceEEEeeCCeEEEEeCCC--C---cEEEEECCCCceEEcccccccc---cce-eEEE
Q 016368 271 YNVE-LDKWKEMPE-GMHAGWNGPAASTMNEEELYVVNEGK--G---RLSKYDADHDWWDEVIELAELK---GAE-KITA 339 (390)
Q Consensus 271 yd~~-~~~W~~~~~-~~~~~~~~~~~~~~~~g~lyv~gg~~--~---~v~~yd~~~~~W~~i~~~p~~r---~~~-~~~~ 339 (390)
+... -.+|+.... ..+.......++..-+|.++++.... + .+..-.-...+|.....+.... ..+ .++.
T Consensus 188 ~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~ 267 (275)
T PF13088_consen 188 RSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQ 267 (275)
T ss_dssp EESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEE
T ss_pred EECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEE
Confidence 4444 348998542 13333333333333477888887731 1 3333233367899877665433 334 3455
Q ss_pred E-CCEEEE
Q 016368 340 A-RGRVCA 346 (390)
Q Consensus 340 ~-~g~l~i 346 (390)
. +|+|||
T Consensus 268 ~~dg~l~i 275 (275)
T PF13088_consen 268 LPDGKLYI 275 (275)
T ss_dssp EETTEEEE
T ss_pred eCCCcCCC
Confidence 5 679986
No 228
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=52.85 E-value=2.1e+02 Score=27.25 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=15.3
Q ss_pred CCceeEEEEeCCCCCceeCCCCCC
Q 016368 97 NSSMEFFCFDPISSTWNPLPAPPQ 120 (390)
Q Consensus 97 ~~~~~~~~~d~~~~~W~~l~~~p~ 120 (390)
+....++..|+.+++-.+|..-+.
T Consensus 57 dg~~nly~lDL~t~~i~QLTdg~g 80 (386)
T PF14583_consen 57 DGNRNLYLLDLATGEITQLTDGPG 80 (386)
T ss_dssp TSS-EEEEEETTT-EEEE---SS-
T ss_pred CCCcceEEEEcccCEEEECccCCC
Confidence 566789999999999999887654
No 229
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=52.79 E-value=1.8e+02 Score=26.32 Aligned_cols=103 Identities=11% Similarity=0.077 Sum_probs=59.5
Q ss_pred EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccccccc
Q 016368 254 NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKG 333 (390)
Q Consensus 254 ~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~ 333 (390)
..+++.+. -.+.+.++|+.+-+-...- .....+...+.+..||.+...||.++.+..+|....+= +..+.....
T Consensus 162 ~p~Ivs~s--~DktvKvWnl~~~~l~~~~--~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~ 235 (315)
T KOG0279|consen 162 NPIIVSAS--WDKTVKVWNLRNCQLRTTF--IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDI 235 (315)
T ss_pred CcEEEEcc--CCceEEEEccCCcchhhcc--ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce--eEeccCCCe
Confidence 45555311 2355668887654422211 11222222333358999999999999999999876543 333333333
Q ss_pred ceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368 334 AEKITAARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 334 ~~~~~~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
.++++...++..+.-.-+.+|-+||..++
T Consensus 236 v~sl~fspnrywL~~at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATSIKIWDLESK 264 (315)
T ss_pred EeeEEecCCceeEeeccCCceEEEeccch
Confidence 45566666666665444567777777654
No 230
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=52.40 E-value=1.7e+02 Score=25.96 Aligned_cols=142 Identities=6% Similarity=0.102 Sum_probs=70.8
Q ss_pred cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCC
Q 016368 146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKS 223 (390)
Q Consensus 146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 223 (390)
.+.++..||. ..++..|..+++.++.-.-. .-+-|+.+.- ++.| +.|+.++ .+.++|.+|
T Consensus 126 enSi~~AgGD--------~~~y~~dlE~G~i~r~~rGH-tDYvH~vv~R~~~~qi-lsG~EDG--------tvRvWd~kt 187 (325)
T KOG0649|consen 126 ENSILFAGGD--------GVIYQVDLEDGRIQREYRGH-TDYVHSVVGRNANGQI-LSGAEDG--------TVRVWDTKT 187 (325)
T ss_pred CCcEEEecCC--------eEEEEEEecCCEEEEEEcCC-cceeeeeeecccCcce-eecCCCc--------cEEEEeccc
Confidence 3556665542 36788899998876542110 0112222221 2333 2344443 678899988
Q ss_pred CccccccEEcccCC-----CCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee
Q 016368 224 DREDWKWEKKAQLK-----DGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN 298 (390)
Q Consensus 224 ~~~~~~W~~~~~~~-----~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 298 (390)
.+. =+.+.+.. .+...+- ..+...+..-.++| ++.....+++.+.+=+.+-+ .+-..+.+. .
T Consensus 188 ~k~---v~~ie~yk~~~~lRp~~g~w-igala~~edWlvCG----gGp~lslwhLrsse~t~vfp---ipa~v~~v~--F 254 (325)
T KOG0649|consen 188 QKH---VSMIEPYKNPNLLRPDWGKW-IGALAVNEDWLVCG----GGPKLSLWHLRSSESTCVFP---IPARVHLVD--F 254 (325)
T ss_pred cce---eEEeccccChhhcCcccCce-eEEEeccCceEEec----CCCceeEEeccCCCceEEEe---cccceeEee--e
Confidence 761 12233222 1112111 23333455555666 56667778877665444433 222222222 5
Q ss_pred CCeEEEEeCCCCcEEEEECC
Q 016368 299 EEELYVVNEGKGRLSKYDAD 318 (390)
Q Consensus 299 ~g~lyv~gg~~~~v~~yd~~ 318 (390)
.+...+++|..+.+..|...
T Consensus 255 ~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 255 VDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ecceEEEeccccceeeeeec
Confidence 56666677766666555443
No 231
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=52.32 E-value=1.7e+02 Score=28.02 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=41.9
Q ss_pred eeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEE---EECCEEEEEeeCCceEEEEEcCCCC
Q 016368 297 MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKIT---AARGRVCAVCENGERIMVVDVLASP 363 (390)
Q Consensus 297 ~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~---~~~g~l~i~g~~~~~v~~~d~~~~~ 363 (390)
..++.|+..|+.++.+..||+.... ..+..+..+....-.+ -....|+..++.+..+.+||+..-.
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcc-cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 5678899999999999999987432 1333333333322222 2355666665667788999987643
No 232
>PRK01029 tolB translocation protein TolB; Provisional
Probab=52.19 E-value=2.3e+02 Score=27.46 Aligned_cols=217 Identities=9% Similarity=-0.050 Sum_probs=0.0
Q ss_pred HHhhcCCCCCC--cccEEEEeecCCCCCCCCCCcccCCCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCC
Q 016368 62 RRLLYSPYFPP--FFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLP 139 (390)
Q Consensus 62 ~~l~~s~~f~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~ 139 (390)
.....+|.|.. ..-.+++.... +....++.+|+.+++-.++...+. ....
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~-------------~g~~~I~~~~l~~g~~~~lt~~~g-~~~~-------------- 235 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYK-------------LGVPKIFLGSLENPAGKKILALQG-NQLM-------------- 235 (428)
T ss_pred CCCcccceEccCCCceEEEEEEcc-------------CCCceEEEEECCCCCceEeecCCC-Cccc--------------
Q ss_pred ceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCC---CceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeE
Q 016368 140 VQSLGVRNNLVLIAATTPHFLPALASPLAFNPQS---NTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSM 216 (390)
Q Consensus 140 ~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t---~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 216 (390)
....-+++.+++.....+ ..---+..||..+ ++-+.+-.........-...-+|+-.++..... ....+
T Consensus 236 -p~wSPDG~~Laf~s~~~g--~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~-----g~~~l 307 (428)
T PRK01029 236 -PTFSPRKKLLAFISDRYG--NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKD-----GRPRI 307 (428)
T ss_pred -eEECCCCCEEEEEECCCC--CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCC-----CCceE
Q ss_pred EEEEC--CCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceE
Q 016368 217 KKWDL--KSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAA 294 (390)
Q Consensus 217 ~~yd~--~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 294 (390)
++++. .... =+.+........ .....-+|+..++.....+...+.+||+++++.+.+.. .+.....+..
T Consensus 308 y~~~~~~~g~~----~~~lt~~~~~~~----~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~w 378 (428)
T PRK01029 308 YIMQIDPEGQS----PRLLTKKYRNSS----CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSW 378 (428)
T ss_pred EEEECcccccc----eEEeccCCCCcc----ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEE
Q ss_pred EEeeCCeEEEEeCCCC---cEEEEECCCCceEEc
Q 016368 295 STMNEEELYVVNEGKG---RLSKYDADHDWWDEV 325 (390)
Q Consensus 295 ~~~~~g~lyv~gg~~~---~v~~yd~~~~~W~~i 325 (390)
. .+|+.+++....+ .++.+|..+.+...+
T Consensus 379 S--pDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 379 A--IDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred C--CCCCEEEEEECCCCCceEEEEECCCCCEEEe
No 233
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.24 E-value=2e+02 Score=26.47 Aligned_cols=239 Identities=13% Similarity=0.073 Sum_probs=115.2
Q ss_pred CceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCcee
Q 016368 98 SSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWF 177 (390)
Q Consensus 98 ~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~ 177 (390)
+.....+||+.+++-...-..+....+ +-| .+...++.++|..-... .....-+-+||.. +..+
T Consensus 26 PG~~~~v~D~~~g~~~~~~~a~~gRHF---yGH----------g~fs~dG~~LytTEnd~--~~g~G~IgVyd~~-~~~~ 89 (305)
T PF07433_consen 26 PGTFALVFDCRTGQLLQRLWAPPGRHF---YGH----------GVFSPDGRLLYTTENDY--ETGRGVIGVYDAA-RGYR 89 (305)
T ss_pred CCcEEEEEEcCCCceeeEEcCCCCCEE---ecC----------EEEcCCCCEEEEecccc--CCCcEEEEEEECc-CCcE
Confidence 335678999998775543323331222 212 45555666666643221 1334568899988 6667
Q ss_pred cCCCCCC-CCcceEEEEE-CC-EEEEE-eccCCCCC--CC------ccCeEEEEECCCCccccccEEcccCCCCCcc-cc
Q 016368 178 FGPQLSI-PRRWCAMGSV-GG-VVYVA-SGVGAHYR--GD------VARSMKKWDLKSDREDWKWEKKAQLKDGRFS-RE 244 (390)
Q Consensus 178 ~~~~~~~-~r~~~~~~~~-~~-~lyv~-GG~~~~~~--~~------~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~-r~ 244 (390)
++...+. ...-|-+... ++ .|.|. ||..-+.+ .. ...++-..|..+++ =..--.+|..... .-
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~----ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA----LLEQVELPPDLHQLSI 165 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc----eeeeeecCccccccce
Confidence 7666553 2333444444 44 45554 55433211 11 11234455677766 2222222221100 00
Q ss_pred ceEEEEECCEEEEEcccCCCC-----ceeEEEeCCCCCeEecCCC----CCCCCCCceEEEeeCCeEEEEeC-CCCcEEE
Q 016368 245 AVEAVGFKGNLCMVNLKGNGA-----KDGAIYNVELDKWKEMPEG----MHAGWNGPAASTMNEEELYVVNE-GKGRLSK 314 (390)
Q Consensus 245 ~~~~~~~~g~lyv~gg~g~~~-----~~~~~yd~~~~~W~~~~~~----~~~~~~~~~~~~~~~g~lyv~gg-~~~~v~~ 314 (390)
.|=++.-+|.++ +|.+-.+. .-+..++.... -+.+... .....+..++++.-++.++.+.. ..+.+..
T Consensus 166 RHLa~~~~G~V~-~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVA-FAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEE-EEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 133333444444 33331111 11112222221 2222210 01112444555423555555554 4458999
Q ss_pred EECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368 315 YDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 315 yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
||..+..|.....++ ..++++..++. |++..+...++..+....
T Consensus 244 ~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~ssG~G~~~~~~~~~~ 287 (305)
T PF07433_consen 244 WDAATGRLLGSVPLP---DACGVAPTDDG-FLVSSGQGQLIRLSPDGP 287 (305)
T ss_pred EECCCCCEeeccccC---ceeeeeecCCc-eEEeCCCccEEEccCccc
Confidence 999999999888665 44566666555 666555556665554443
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=49.12 E-value=1.6e+02 Score=24.84 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=33.0
Q ss_pred ceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC---CcEEEEECCCCceEEccccc
Q 016368 266 KDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK---GRLSKYDADHDWWDEVIELA 329 (390)
Q Consensus 266 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~---~~v~~yd~~~~~W~~i~~~p 329 (390)
..+..||.+.+.=..+.. .... .+....+|+..+++|.. |.+..||.. +.+.+....
T Consensus 83 ~~v~lyd~~~~~i~~~~~----~~~n-~i~wsP~G~~l~~~g~~n~~G~l~~wd~~--~~~~i~~~~ 142 (194)
T PF08662_consen 83 AKVTLYDVKGKKIFSFGT----QPRN-TISWSPDGRFLVLAGFGNLNGDLEFWDVR--KKKKISTFE 142 (194)
T ss_pred cccEEEcCcccEeEeecC----CCce-EEEECCCCCEEEEEEccCCCcEEEEEECC--CCEEeeccc
Confidence 367789986332222222 1112 23334788888888743 479999988 455565443
No 235
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=48.15 E-value=2.7e+02 Score=27.02 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=36.1
Q ss_pred CCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCCC
Q 016368 299 EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLASP 363 (390)
Q Consensus 299 ~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~~ 363 (390)
+.+||-.+ .+..+..||...+.- +.+.-.+..-.++++- .++.+.+|.....|++.++.+-+
T Consensus 188 ~~rl~TaS-~D~t~k~wdlS~g~L--Llti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 188 NARLYTAS-EDRTIKLWDLSLGVL--LLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS 250 (476)
T ss_pred cceEEEec-CCceEEEEEecccee--eEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence 34555444 355788888887632 2222233333444443 56677777777788888876543
No 236
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=47.90 E-value=3.4e+02 Score=28.16 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=38.7
Q ss_pred eCCeEEEEeCCCCcEEEEECCCCceEEccccccc-----------------------cc--ceeEEE--ECCEEEEEeeC
Q 016368 298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAEL-----------------------KG--AEKITA--ARGRVCAVCEN 350 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~-----------------------r~--~~~~~~--~~g~l~i~g~~ 350 (390)
++.++...|..++.+..|++++-... .++|.. +. ..+|.. -.++|-.+ .+
T Consensus 268 Vs~r~I~cgCa~g~vrlFnp~tL~y~--~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscV-Yn 344 (1080)
T KOG1408|consen 268 VSSRLIACGCAKGMVRLFNPETLDYA--GTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCV-YN 344 (1080)
T ss_pred eecceEEEeeccceeeecCcchhhhc--cccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEE-Ec
Confidence 56777777778889999999875432 222211 11 122222 25677766 77
Q ss_pred CceEEEEEcCCC
Q 016368 351 GERIMVVDVLAS 362 (390)
Q Consensus 351 ~~~v~~~d~~~~ 362 (390)
+.++|+||+...
T Consensus 345 dhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 345 DHSLYVWDVRDV 356 (1080)
T ss_pred CceEEEEecccc
Confidence 789999998763
No 237
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=47.24 E-value=1.9e+02 Score=29.42 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=40.7
Q ss_pred eCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368 298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~ 361 (390)
-.|.+++-||..+.+..||+.+.+ ++-.+..++.+.-+..+ +|.-.+-++.+..|-+||+..
T Consensus 181 ~t~t~ivsGgtek~lr~wDprt~~--kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 181 QTGTIIVSGGTEKDLRLWDPRTCK--KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred CcceEEEecCcccceEEecccccc--ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 345688899999999999998753 44445555555554444 555555555566677777644
No 238
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=47.15 E-value=2.1e+02 Score=25.51 Aligned_cols=195 Identities=10% Similarity=0.086 Sum_probs=92.4
Q ss_pred cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCC
Q 016368 146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSD 224 (390)
Q Consensus 146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 224 (390)
+++..|.||.. ..+-++|....+-.+.-..+.|.. .+++ .++--++.|. ....++++|..++
T Consensus 94 dgrWMyTgseD-------gt~kIWdlR~~~~qR~~~~~spVn---~vvlhpnQteLis~d-------qsg~irvWDl~~~ 156 (311)
T KOG0315|consen 94 DGRWMYTGSED-------GTVKIWDLRSLSCQRNYQHNSPVN---TVVLHPNQTELISGD-------QSGNIRVWDLGEN 156 (311)
T ss_pred cCeEEEecCCC-------ceEEEEeccCcccchhccCCCCcc---eEEecCCcceEEeec-------CCCcEEEEEccCC
Confidence 44555555432 246677877644444333332222 2222 2222222222 2347899999998
Q ss_pred ccccccEEcccCCCCCccccceEEE-EECCEEEEEcccCCCCceeEEEeCCCCCeE-ecCCC-CCCCCCCceEEE--eeC
Q 016368 225 REDWKWEKKAQLKDGRFSREAVEAV-GFKGNLCMVNLKGNGAKDGAIYNVELDKWK-EMPEG-MHAGWNGPAAST--MNE 299 (390)
Q Consensus 225 ~~~~~W~~~~~~~~~~~~r~~~~~~-~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~-~~~~~-~~~~~~~~~~~~--~~~ 299 (390)
. -.. ..+|+.... -.+.. .-+|++.+-. +....-.++++.++.-. ++.+. --..+.++.+-+ ..+
T Consensus 157 ~----c~~-~liPe~~~~--i~sl~v~~dgsml~a~---nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd 226 (311)
T KOG0315|consen 157 S----CTH-ELIPEDDTS--IQSLTVMPDGSMLAAA---NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD 226 (311)
T ss_pred c----ccc-ccCCCCCcc--eeeEEEcCCCcEEEEe---cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC
Confidence 6 332 122221110 12222 2355554441 11222345555443221 11110 112223333322 367
Q ss_pred CeEEEEeCCCCcEEEEECCCCceEEcccc-cccccceeEEEECCEEEEE-eeCCceEEEEEcCCCC-CcceE
Q 016368 300 EELYVVNEGKGRLSKYDADHDWWDEVIEL-AELKGAEKITAARGRVCAV-CENGERIMVVDVLASP-ARAWL 368 (390)
Q Consensus 300 g~lyv~gg~~~~v~~yd~~~~~W~~i~~~-p~~r~~~~~~~~~g~l~i~-g~~~~~v~~~d~~~~~-~~~W~ 368 (390)
++..+..+.+..+.+|+.++. .+--..+ ...|....|+...+.-||+ ++.+..+-.||+...+ .++|.
T Consensus 227 ~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 227 VKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred CcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 777777778889999988876 2221112 1335555665554444544 4556677788887763 23444
No 239
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=47.05 E-value=1.9e+02 Score=25.56 Aligned_cols=49 Identities=20% Similarity=0.157 Sum_probs=32.7
Q ss_pred eEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCE
Q 016368 293 AASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGR 343 (390)
Q Consensus 293 ~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~ 343 (390)
+++..-.|.|||..-..+.++++|+.+.+--+--.+|.++. ++++++|+
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi--tsccFgGk 264 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI--TSCCFGGK 264 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce--EEEEecCC
Confidence 34433578999887767799999999987554445665553 44455443
No 240
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=46.59 E-value=2.3e+02 Score=25.89 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=16.3
Q ss_pred ECCEEEEEeeCCceEEEEEcCCC
Q 016368 340 ARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 340 ~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
-+++-.+.|.++..+.+|++.+.
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCC
Confidence 36666666566678999998665
No 241
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=45.86 E-value=2.9e+02 Score=26.78 Aligned_cols=64 Identities=11% Similarity=0.143 Sum_probs=37.8
Q ss_pred ECCEEEEEcccCCCCceeEEEeCCCC----CeEecCCCCCCCCC-CceEEEeeCCeEEEEeCCCCcEEEEECCC
Q 016368 251 FKGNLCMVNLKGNGAKDGAIYNVELD----KWKEMPEGMHAGWN-GPAASTMNEEELYVVNEGKGRLSKYDADH 319 (390)
Q Consensus 251 ~~g~lyv~gg~g~~~~~~~~yd~~~~----~W~~~~~~~~~~~~-~~~~~~~~~g~lyv~gg~~~~v~~yd~~~ 319 (390)
.+..+|++. .....++||..++ +|..+...+-...+ .-..+. .++++.|-.-.++.+.+.++..
T Consensus 296 ~~h~~l~ih----lp~~tlcyD~at~~~~~qw~~l~tg~~~~~~R~~~~~f-~~~q~~VGD~~~g~lg~L~~n~ 364 (469)
T PF11134_consen 296 DGHEFLLIH----LPRKTLCYDAATSQWGEQWFILKTGFYDEPYRAIDFMF-FDNQITVGDKQNGLLGALDFNA 364 (469)
T ss_pred CceEEEEEE----cCCceEEEEcccCCcccceEEEeccccCCcceeeeeEE-eCCeeEecccccceeEEecccc
Confidence 355688885 4567889999998 45556654523322 222332 5677665544556666666654
No 242
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=45.26 E-value=71 Score=19.57 Aligned_cols=29 Identities=10% Similarity=0.302 Sum_probs=22.6
Q ss_pred ceeEEEECCEEEEEeeCCceEEEEEcCCCC
Q 016368 334 AEKITAARGRVCAVCENGERIMVVDVLASP 363 (390)
Q Consensus 334 ~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~ 363 (390)
...+.+.++.+||. .....+.++|++.+.
T Consensus 4 a~~v~v~g~yaYva-~~~~Gl~IvDISnPs 32 (42)
T PF08309_consen 4 ARDVAVSGNYAYVA-DGNNGLVIVDISNPS 32 (42)
T ss_pred EEEEEEECCEEEEE-eCCCCEEEEECCCCC
Confidence 34577789999998 555689999998873
No 243
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.01 E-value=4.5e+02 Score=28.77 Aligned_cols=164 Identities=14% Similarity=0.156 Sum_probs=83.4
Q ss_pred eecCCCC-CCCCcceEEEEE---CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc-ccceEEEE
Q 016368 176 WFFGPQL-SIPRRWCAMGSV---GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS-REAVEAVG 250 (390)
Q Consensus 176 W~~~~~~-~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~-r~~~~~~~ 250 (390)
|..+..+ +.+|..-..+.. .|+||+.|+ .+.+-++|..... .+.++|..-.. -...++-.
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd---------~r~IRIWDa~~E~------~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD---------VRSIRIWDAHKEQ------VVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCC---------eeEEEEEecccce------eEeecccCCCccceeecccc
Confidence 5555444 455654433332 678888775 3477888887766 45555543211 00122333
Q ss_pred ECCEEEEEcccCCCCceeEEEeCCC-------CCeEecCCCCCCCCCCceEEEeeCCeE-EEEeCCCCcEEEEECCCCce
Q 016368 251 FKGNLCMVNLKGNGAKDGAIYNVEL-------DKWKEMPEGMHAGWNGPAASTMNEEEL-YVVNEGKGRLSKYDADHDWW 322 (390)
Q Consensus 251 ~~g~lyv~gg~g~~~~~~~~yd~~~-------~~W~~~~~~~~~~~~~~~~~~~~~g~l-yv~gg~~~~v~~yd~~~~~W 322 (390)
.+|.+.+.| .....+-+||-.. ..|++-.. . .+-...++- -+|.- .|-|..+|+|..+|+....=
T Consensus 1219 ~~gn~i~AG---faDGsvRvyD~R~a~~ds~v~~~R~h~~-~-~~Iv~~slq--~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1219 VHGNIIAAG---FADGSVRVYDRRMAPPDSLVCVYREHND-V-EPIVHLSLQ--RQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred cCCceEEEe---ecCCceEEeecccCCccccceeecccCC-c-ccceeEEee--cCCCcceeeeccCCeEEEEecccCcc
Confidence 567788884 2233455787542 23444333 1 111111222 33444 34555778999999886411
Q ss_pred EEcccccccc--c--ceeEEEEC-CEEEEEeeCCceEEEEEcCCC
Q 016368 323 DEVIELAELK--G--AEKITAAR-GRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 323 ~~i~~~p~~r--~--~~~~~~~~-g~l~i~g~~~~~v~~~d~~~~ 362 (390)
........++ + -.++.++. -.|+..|+ ...+-+|+++..
T Consensus 1292 e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs-~q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAPIIASGS-AQLIKIYSLSGE 1335 (1387)
T ss_pred cccceeeeccccCccceeeeeccCCCeeeecC-cceEEEEecChh
Confidence 1111222222 1 12455553 34555544 378888888775
No 244
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=44.35 E-value=2.6e+02 Score=25.89 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=46.9
Q ss_pred eCCeEEEEeCCCCcEEEEECCCCceEEccccccccc---ceeEEEE--CCEEEEEeeCCceEEEEEcCCCCCcceE-ecC
Q 016368 298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKG---AEKITAA--RGRVCAVCENGERIMVVDVLASPARAWL-VDP 371 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~---~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~~~~~W~-~~~ 371 (390)
.++++|.-...+.+|..||+..-. ..+-+|...+. ---..-+ .|++..-|+-...|-+||.++.. .|. +..
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~-~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~ 337 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSR-DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTG 337 (406)
T ss_pred CcCeecccccCCCeEEEEeehhcc-chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Ccccccc
Confidence 455555444345588888876321 11112221111 0011112 45666655456789999998842 465 555
Q ss_pred CCCeeEEEEEeeccc
Q 016368 372 PRGFQVVAVHVLPRM 386 (390)
Q Consensus 372 p~g~~~~~~~~~~~~ 386 (390)
+...++.+|++=|-|
T Consensus 338 ~~sd~vNgvslnP~m 352 (406)
T KOG2919|consen 338 NYSDTVNGVSLNPIM 352 (406)
T ss_pred cccccccceecCccc
Confidence 556677888877665
No 245
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=43.58 E-value=64 Score=29.58 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=44.9
Q ss_pred eCCeEEEEeCCCCcEEEEECCCCceEEccccc-ccccce-eEEEE-CCEEEEEeeCCceEEEEEcCCCC
Q 016368 298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELA-ELKGAE-KITAA-RGRVCAVCENGERIMVVDVLASP 363 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p-~~r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~~~ 363 (390)
-.|.+..+|..+|.+..||+.|.. ++.+- .+-... +++.. +|+..+..+.+.++..||+..+.
T Consensus 33 ~~G~~lAvGc~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 33 RWGDYLAVGCANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cCcceeeeeccCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 568888899999999999999865 33222 122222 33333 78888887888899999998763
No 246
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.20 E-value=3e+02 Score=26.20 Aligned_cols=106 Identities=10% Similarity=0.100 Sum_probs=59.1
Q ss_pred ECCEEEEEcccCCCCceeEEEeCCCC-CeEecCCCCCCCCCC-ceEEEeeCC---eEEEEeC--CCCcEEEEECCCCceE
Q 016368 251 FKGNLCMVNLKGNGAKDGAIYNVELD-KWKEMPEGMHAGWNG-PAASTMNEE---ELYVVNE--GKGRLSKYDADHDWWD 323 (390)
Q Consensus 251 ~~g~lyv~gg~g~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~-~~~~~~~~g---~lyv~gg--~~~~v~~yd~~~~~W~ 323 (390)
-+|++.+.- +.....++|..+. .|....+ ....... .+-.. .++ .++++.- ..+.+..+|.....|.
T Consensus 196 ~dgk~lasi----g~d~~~VW~~~~g~~~a~~t~-~~k~~~~~~cRF~-~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~ 269 (398)
T KOG0771|consen 196 PDGKFLASI----GADSARVWSVNTGAALARKTP-FSKDEMFSSCRFS-VDNAQETLRLAASQFPGGGVRLCDISLWSGS 269 (398)
T ss_pred CCCcEEEEe----cCCceEEEEeccCchhhhcCC-cccchhhhhceec-ccCCCceEEEEEecCCCCceeEEEeeeeccc
Confidence 466555432 3346778888876 5555543 2222111 11111 233 5666654 2336777777765564
Q ss_pred Ecccccc--cc--cceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368 324 EVIELAE--LK--GAEKITAA-RGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 324 ~i~~~p~--~r--~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
.+..... .+ ...++.+. +|+...+|...++|.+|+..+-
T Consensus 270 ~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l 313 (398)
T KOG0771|consen 270 NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL 313 (398)
T ss_pred cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee
Confidence 3322221 12 23355554 8999999988899999998764
No 247
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=43.16 E-value=16 Score=33.77 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=32.2
Q ss_pred CCCCCCcHHHHHHHHhcCC-----------chhhHhhhHhHHHhhcCCC
Q 016368 32 LLLPGLPNHLADRCLSSLP-----------PALLFSVCHSWRRLLYSPY 69 (390)
Q Consensus 32 ~~~~~LP~dl~~~iL~rLP-----------l~~~r~Vck~W~~l~~s~~ 69 (390)
..++.||.+++.+|+-++. ...+..||+.|+....+..
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v 91 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIV 91 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccc
Confidence 5788999999999999996 4567799999999877644
No 248
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=43.07 E-value=2.8e+02 Score=27.44 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=47.6
Q ss_pred eCCeEEEEeCCCCcEEEEECCCCceEEcccccc-cccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368 298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAE-LKGAEKITAARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~-~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
.+|..+.+|-.++.+..||.++.+ .+..+.. .....++...++.+...|.....|..+|+...
T Consensus 227 ~~G~~LavG~~~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 227 PDGSHLAVGTSDGTVQIWDVKEQK--KTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred CCCCEEEEeecCCeEEEEehhhcc--ccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecc
Confidence 578889999999999999987532 3333433 34455677788999999888889999998764
No 249
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=42.60 E-value=2.7e+02 Score=25.48 Aligned_cols=65 Identities=6% Similarity=0.029 Sum_probs=41.7
Q ss_pred eeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368 297 MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 297 ~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~ 361 (390)
.++.-||.-+.++..+-+||..|-+=...-.|+..-..|++..+ .-.|...|.++.+|.++|++.
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS 177 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence 57888888888888999999887655444556655454544433 234444555555666666655
No 250
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=41.56 E-value=2.9e+02 Score=25.51 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=69.9
Q ss_pred cCeEEEEEeecCCCCCCCCCcEEEeCCCCcee-cC---CCCC--CCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEE
Q 016368 146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWF-FG---PQLS--IPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKW 219 (390)
Q Consensus 146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~-~~---~~~~--~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~y 219 (390)
.+-+.++||+.... .+.+.+.+||-...+-. ++ .+.. .-|..+-++++.++|||+-=.+ ....+.++
T Consensus 58 ~N~laLVGGg~~pk-y~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~------n~k~l~~~ 130 (346)
T KOG2111|consen 58 SNYLALVGGGSRPK-YPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPD------NPKLLHVI 130 (346)
T ss_pred hceEEEecCCCCCC-CCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCC------Chhheeee
Confidence 34556666665433 67889999994433211 11 1111 1134456666777777764221 23344444
Q ss_pred ECCCCccccccEEcccCCCCCccccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCc-eEEE-
Q 016368 220 DLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGP-AAST- 296 (390)
Q Consensus 220 d~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~- 296 (390)
|...|- .. .++.+-.-++ +.++-|. -...+.+-|+...+=. ++..-.++-.. +++.
T Consensus 131 et~~NP------------kG-----lC~~~~~~~k~~LafPg~--k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~L 189 (346)
T KOG2111|consen 131 ETRSNP------------KG-----LCSLCPTSNKSLLAFPGF--KTGQVQIVDLASTKPN--APSIINAHDSDIACVAL 189 (346)
T ss_pred ecccCC------------Cc-----eEeecCCCCceEEEcCCC--ccceEEEEEhhhcCcC--CceEEEcccCceeEEEE
Confidence 444432 11 1222222333 4444211 1123446666544331 11011111111 2111
Q ss_pred eeCCeEEEEeCCCC-cEEEEECCCCc
Q 016368 297 MNEEELYVVNEGKG-RLSKYDADHDW 321 (390)
Q Consensus 297 ~~~g~lyv~gg~~~-~v~~yd~~~~~ 321 (390)
...|.+..-+...| -|..||..+.+
T Consensus 190 n~~Gt~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 190 NLQGTLVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred cCCccEEEEeccCcEEEEEEEcCCCc
Confidence 36788888888777 46778888754
No 251
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=41.45 E-value=2.9e+02 Score=25.49 Aligned_cols=167 Identities=11% Similarity=0.047 Sum_probs=78.1
Q ss_pred CcEEEeCCCCce-ecCCCC----CCCCcceEEEEECCEEEEEecc---CCCCCCCccCeEEEEECCCCccccccEEcccC
Q 016368 165 SPLAFNPQSNTW-FFGPQL----SIPRRWCAMGSVGGVVYVASGV---GAHYRGDVARSMKKWDLKSDREDWKWEKKAQL 236 (390)
Q Consensus 165 ~~~~~dp~t~~W-~~~~~~----~~~r~~~~~~~~~~~lyv~GG~---~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~ 236 (390)
.+..+++.+..- +.+... +..|.+=..+.-+|.+|+---. .........-.++.||+.. . ..++..-
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g-~----~~~l~~~ 160 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG-G----VVRLLDD 160 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC-C----EEEeecC
Confidence 455566644433 443322 2334444444456777664322 1111123344789999843 3 3443322
Q ss_pred CCCCccccceEEEE-ECC-EEEEEcccCCCCceeEEEeCCC------C--CeEecCCCCCCCCCCceEEEeeCCeEEEEe
Q 016368 237 KDGRFSREAVEAVG-FKG-NLCMVNLKGNGAKDGAIYNVEL------D--KWKEMPEGMHAGWNGPAASTMNEEELYVVN 306 (390)
Q Consensus 237 ~~~~~~r~~~~~~~-~~g-~lyv~gg~g~~~~~~~~yd~~~------~--~W~~~~~~~~~~~~~~~~~~~~~g~lyv~g 306 (390)
..... -+.+. -++ .+|+. ......+..|+... + .+..... ..+. --++++.-+|.||+..
T Consensus 161 ~~~~~----NGla~SpDg~tly~a---DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~--~~G~-PDG~~vDadG~lw~~a 230 (307)
T COG3386 161 DLTIP----NGLAFSPDGKTLYVA---DTPANRIHRYDLDPATGPIGGRRGFVDFDE--EPGL-PDGMAVDADGNLWVAA 230 (307)
T ss_pred cEEec----CceEECCCCCEEEEE---eCCCCeEEEEecCcccCccCCcceEEEccC--CCCC-CCceEEeCCCCEEEec
Confidence 11111 22222 344 67777 12224556665542 1 1111111 1111 1244444789999866
Q ss_pred CCCC-cEEEEECCCCceEEcccccccccceeEEEE-C---CEEEEEee
Q 016368 307 EGKG-RLSKYDADHDWWDEVIELAELKGAEKITAA-R---GRVCAVCE 349 (390)
Q Consensus 307 g~~~-~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~---g~l~i~g~ 349 (390)
...+ .+.+|++.. +=...-.+|. ...+++.+ + +.|||...
T Consensus 231 ~~~g~~v~~~~pdG-~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 231 VWGGGRVVRFNPDG-KLLGEIKLPV--KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ccCCceEEEECCCC-cEEEEEECCC--CCCccceEeCCCcCEEEEEec
Confidence 5554 999999993 2222223443 22233333 3 67888863
No 252
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.38 E-value=3.2e+02 Score=25.95 Aligned_cols=146 Identities=15% Similarity=0.274 Sum_probs=73.4
Q ss_pred EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc------CCCCCccccceEEEEECC----EEEEEcccCCCCc
Q 016368 197 VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ------LKDGRFSREAVEAVGFKG----NLCMVNLKGNGAK 266 (390)
Q Consensus 197 ~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~------~~~~~~~r~~~~~~~~~g----~lyv~gg~g~~~~ 266 (390)
.|+.+||... .+.+.+||.++.+-- |+.--. |..+.+ -..+.++.+ ++..+. ..+
T Consensus 162 ~Iva~GGke~------~n~lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW---~tdi~Fl~g~~~~~fat~T----~~h 226 (412)
T KOG3881|consen 162 YIVATGGKEN------INELKIWDLEQSKQI--WSAKNVPNDRLGLRVPVW---ITDIRFLEGSPNYKFATIT----RYH 226 (412)
T ss_pred ceEecCchhc------ccceeeeecccceee--eeccCCCCccccceeeee---eccceecCCCCCceEEEEe----cce
Confidence 5777788653 467888888764311 664322 222333 233444444 222221 223
Q ss_pred eeEEEeCCCCCeEecCC--CCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccccccc-ceeEEEECC-
Q 016368 267 DGAIYNVELDKWKEMPE--GMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKG-AEKITAARG- 342 (390)
Q Consensus 267 ~~~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~-~~~~~~~~g- 342 (390)
.+-.||+..++ +.+.. .+..+....+.. .+++..++|...+.+..||..+..--... +....+ ..++.++.+
T Consensus 227 qvR~YDt~~qR-RPV~~fd~~E~~is~~~l~--p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~-~kg~tGsirsih~hp~~ 302 (412)
T KOG3881|consen 227 QVRLYDTRHQR-RPVAQFDFLENPISSTGLT--PSGNFIYTGNTKGQLAKFDLRGGKLLGCG-LKGITGSIRSIHCHPTH 302 (412)
T ss_pred eEEEecCcccC-cceeEeccccCcceeeeec--CCCcEEEEecccchhheecccCceeeccc-cCCccCCcceEEEcCCC
Confidence 35589987553 22221 021222222222 56777777877889999999876432221 111112 223555544
Q ss_pred EEEEEeeCCceEEEEEcCC
Q 016368 343 RVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 343 ~l~i~g~~~~~v~~~d~~~ 361 (390)
.+...++-+--+-++|+.+
T Consensus 303 ~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 303 PVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ceEEeeccceeEEEeeccc
Confidence 3444434455677788777
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=40.04 E-value=4.1e+02 Score=26.79 Aligned_cols=52 Identities=8% Similarity=0.074 Sum_probs=33.9
Q ss_pred CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCc
Q 016368 164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDR 225 (390)
Q Consensus 164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~ 225 (390)
.+++++|...++|-.--.. .-...-++.+ -..|+++||.++ .++.+|+.+.+
T Consensus 155 ~evYRlNLEqGrfL~P~~~--~~~~lN~v~in~~hgLla~Gt~~g--------~VEfwDpR~ks 208 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFET--DSGELNVVSINEEHGLLACGTEDG--------VVEFWDPRDKS 208 (703)
T ss_pred cceEEEEcccccccccccc--ccccceeeeecCccceEEecccCc--------eEEEecchhhh
Confidence 6899999999988542222 1122223333 345888888765 78999998765
No 254
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=39.42 E-value=3.7e+02 Score=26.11 Aligned_cols=50 Identities=8% Similarity=0.112 Sum_probs=29.7
Q ss_pred eCCeEEEEeCCCCcEEEEECCCC--ceEEcccccccccceeEE-EECCEEEEE
Q 016368 298 NEEELYVVNEGKGRLSKYDADHD--WWDEVIELAELKGAEKIT-AARGRVCAV 347 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~~~--~W~~i~~~p~~r~~~~~~-~~~g~l~i~ 347 (390)
.+..|+..|..+|.+..|-.+.+ .-..+.+++..-...+++ ...|+-.++
T Consensus 390 ~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 390 PGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVA 442 (479)
T ss_pred ccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEE
Confidence 67788888888887666666544 455555665443333443 335553344
No 255
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=39.18 E-value=3.4e+02 Score=25.60 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=39.8
Q ss_pred eEEEeeCCeEEEEeCCCCcEEEEECCCC-ceEEccccccc------ccceeEEEE-CCEEEEEeeCCceEEEEEcC
Q 016368 293 AASTMNEEELYVVNEGKGRLSKYDADHD-WWDEVIELAEL------KGAEKITAA-RGRVCAVCENGERIMVVDVL 360 (390)
Q Consensus 293 ~~~~~~~g~lyv~gg~~~~v~~yd~~~~-~W~~i~~~p~~------r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~ 360 (390)
++.+ ..+-+|+.||.++.++.||-++. ..+.......+ ++-++++.- .|.-.|-|+.+..|-+|.-.
T Consensus 365 tl~~-nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 365 TLSV-NSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred eeee-ccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 3443 67888899998899999998764 35555433322 222333222 34444555667777777543
No 256
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.84 E-value=4.7e+02 Score=27.19 Aligned_cols=163 Identities=9% Similarity=0.073 Sum_probs=80.4
Q ss_pred ccccccccccccCCCceEEeec--CeEEEEEeecCCCCCCCCCcEEEeCCCC---ceecCCCCCCCCcceEEEEECCEEE
Q 016368 125 RLLYRHPSFLSRKLPVQSLGVR--NNLVLIAATTPHFLPALASPLAFNPQSN---TWFFGPQLSIPRRWCAMGSVGGVVY 199 (390)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~--~~l~~~gG~~~~~~~~~~~~~~~dp~t~---~W~~~~~~~~~r~~~~~~~~~~~ly 199 (390)
-..|.|+.|. .|++.+ +.-|++.|... ..+-+|+...+ -|..+..+.++. +-.-+|+-.
T Consensus 403 L~~F~HndfV------TcVaFnPvDDryFiSGSLD------~KvRiWsI~d~~Vv~W~Dl~~lITAv----cy~PdGk~a 466 (712)
T KOG0283|consen 403 LKVFSHNDFV------TCVAFNPVDDRYFISGSLD------GKVRLWSISDKKVVDWNDLRDLITAV----CYSPDGKGA 466 (712)
T ss_pred eeEEecCCee------EEEEecccCCCcEeecccc------cceEEeecCcCeeEeehhhhhhheeE----EeccCCceE
Confidence 3467787775 777664 46677766533 34666777666 477776554211 111267777
Q ss_pred EEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE----ECCEEEEEcccCCCCceeEEEeCCC
Q 016368 200 VASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG----FKGNLCMVNLKGNGAKDGAIYNVEL 275 (390)
Q Consensus 200 v~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~----~~g~lyv~gg~g~~~~~~~~yd~~~ 275 (390)
|+|-+.+ .+..|+...++..-.|.....-......+ -.++.. ..+++.|.. ....+-+||..+
T Consensus 467 vIGt~~G--------~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTS----nDSrIRI~d~~~ 533 (712)
T KOG0283|consen 467 VIGTFNG--------YCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTS----NDSRIRIYDGRD 533 (712)
T ss_pred EEEEecc--------EEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEec----CCCceEEEeccc
Confidence 7877665 56677776665111111111100000000 011111 123466653 345567888854
Q ss_pred CCeEe-cCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEEC
Q 016368 276 DKWKE-MPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDA 317 (390)
Q Consensus 276 ~~W~~-~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~ 317 (390)
..-.. ..- .........+....+|+=.|.+..+..|+.|+.
T Consensus 534 ~~lv~KfKG-~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 534 KDLVHKFKG-FRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred hhhhhhhcc-cccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 32111 111 222222223332257777777776666666664
No 257
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=38.78 E-value=2.8e+02 Score=24.63 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=74.9
Q ss_pred ceecCCCCCC-----CCcceEEEE-ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEE
Q 016368 175 TWFFGPQLSI-----PRRWCAMGS-VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEA 248 (390)
Q Consensus 175 ~W~~~~~~~~-----~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~ 248 (390)
.|+..+|+.. |-.+.-... -.+.|+..||.. .++..|.++++ -+..-.-... + -|++
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~---------~~y~~dlE~G~----i~r~~rGHtD-Y---vH~v 162 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG---------VIYQVDLEDGR----IQREYRGHTD-Y---VHSV 162 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCCe---------EEEEEEecCCE----EEEEEcCCcc-e---eeee
Confidence 5777776643 222222121 257788888654 56788999888 4433222211 1 2444
Q ss_pred EE--ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCC-----CCC-CCC-ceEEEeeCCeEEEEeCCCCcEEEEECCC
Q 016368 249 VG--FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGM-----HAG-WNG-PAASTMNEEELYVVNEGKGRLSKYDADH 319 (390)
Q Consensus 249 ~~--~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~-----~~~-~~~-~~~~~~~~g~lyv~gg~~~~v~~yd~~~ 319 (390)
+. .++.++ .|. ...++-++|..+.+=..+-... ..+ ... ..+.. .+..-.|.|| ...+-.|+...
T Consensus 163 v~R~~~~qil--sG~--EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala-~~edWlvCGg-Gp~lslwhLrs 236 (325)
T KOG0649|consen 163 VGRNANGQIL--SGA--EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA-VNEDWLVCGG-GPKLSLWHLRS 236 (325)
T ss_pred eecccCccee--ecC--CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe-ccCceEEecC-CCceeEEeccC
Confidence 43 233333 211 2233457888887654432111 111 111 12332 4444444554 33556677666
Q ss_pred CceEEcccccccccceeEEEECCEEEEEeeCCceEEEE
Q 016368 320 DWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVV 357 (390)
Q Consensus 320 ~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~ 357 (390)
.+-+.+-++|.+ .+-+...++.|.+. +.++.|..|
T Consensus 237 se~t~vfpipa~--v~~v~F~~d~vl~~-G~g~~v~~~ 271 (325)
T KOG0649|consen 237 SESTCVFPIPAR--VHLVDFVDDCVLIG-GEGNHVQSY 271 (325)
T ss_pred CCceEEEecccc--eeEeeeecceEEEe-ccccceeee
Confidence 666666555432 22233345555555 444444443
No 258
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=38.71 E-value=3.8e+02 Score=26.06 Aligned_cols=150 Identities=7% Similarity=-0.026 Sum_probs=74.6
Q ss_pred eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368 100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG 179 (390)
Q Consensus 100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~ 179 (390)
..++..|..++.-..+...+. .... ....-++..+++.... .-..+++++|..+++-.++
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g-~~~~---------------P~fspDG~~l~f~~~r----dg~~~iy~~dl~~~~~~~L 277 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG-NNGA---------------PAFSPDGSKLAFSSSR----DGSPDIYLMDLDGKNLPRL 277 (425)
T ss_pred ceEEEEeccCCccceeeccCC-ccCC---------------ccCCCCCCEEEEEECC----CCCccEEEEcCCCCcceec
Confidence 456777777766666555443 2221 1112333333333221 1236899999998873333
Q ss_pred CCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEc
Q 016368 180 PQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVN 259 (390)
Q Consensus 180 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~g 259 (390)
-.....-...+..--+.+|+...... ....+++||++..+ =+.+-.-.... .+....-+|+.+++-
T Consensus 278 t~~~gi~~~Ps~spdG~~ivf~Sdr~------G~p~I~~~~~~g~~----~~riT~~~~~~----~~p~~SpdG~~i~~~ 343 (425)
T COG0823 278 TNGFGINTSPSWSPDGSKIVFTSDRG------GRPQIYLYDLEGSQ----VTRLTFSGGGN----SNPVWSPDGDKIVFE 343 (425)
T ss_pred ccCCccccCccCCCCCCEEEEEeCCC------CCcceEEECCCCCc----eeEeeccCCCC----cCccCCCCCCEEEEE
Confidence 22211111122222244555553333 23489999998887 33332211111 122334566655553
Q ss_pred ccCCCCceeEEEeCCCCC-eEecCC
Q 016368 260 LKGNGAKDGAIYNVELDK-WKEMPE 283 (390)
Q Consensus 260 g~g~~~~~~~~yd~~~~~-W~~~~~ 283 (390)
.+..+...+..+|+.++. |+.+..
T Consensus 344 ~~~~g~~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 344 SSSGGQWDIDKNDLASGGKIRILTS 368 (425)
T ss_pred eccCCceeeEEeccCCCCcEEEccc
Confidence 221123556789988776 887765
No 259
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=38.22 E-value=3.1e+02 Score=28.55 Aligned_cols=82 Identities=9% Similarity=0.103 Sum_probs=51.7
Q ss_pred eEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEE-EECCEEEEEeeCCceEEEEEcCCC---------
Q 016368 293 AASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKIT-AARGRVCAVCENGERIMVVDVLAS--------- 362 (390)
Q Consensus 293 ~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~-~~~g~l~i~g~~~~~v~~~d~~~~--------- 362 (390)
++++ .++++.+..|..+.+..|+..+.+-..- ++.. ...++. +-+++..|+|..++.+.+||++..
T Consensus 378 sl~v-S~d~~~~~Sga~~SikiWn~~t~kciRT--i~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH 453 (888)
T KOG0306|consen 378 SLCV-SSDSILLASGAGESIKIWNRDTLKCIRT--ITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAH 453 (888)
T ss_pred EEEe-ecCceeeeecCCCcEEEEEccCcceeEE--eccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcc
Confidence 4454 7788888888788888888886543322 2211 333333 336777777777778999998763
Q ss_pred CCcceEe-cCCCCeeEE
Q 016368 363 PARAWLV-DPPRGFQVV 378 (390)
Q Consensus 363 ~~~~W~~-~~p~g~~~~ 378 (390)
++..|.+ ..|++-..+
T Consensus 454 dgaIWsi~~~pD~~g~v 470 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFV 470 (888)
T ss_pred ccceeeeeecCCCCceE
Confidence 3457985 456554333
No 260
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=37.75 E-value=80 Score=18.00 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=12.6
Q ss_pred CCEEEEEeeCCceEEEEE
Q 016368 341 RGRVCAVCENGERIMVVD 358 (390)
Q Consensus 341 ~g~l~i~g~~~~~v~~~d 358 (390)
++..++.|+.++.+.+||
T Consensus 22 ~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 22 DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp TSSEEEEEETTSEEEEEE
T ss_pred ccccceeeCCCCEEEEEC
Confidence 456666667777888876
No 261
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=37.49 E-value=3.7e+02 Score=25.66 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=68.1
Q ss_pred CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC-CccccceEEEEECCEE-EEEcccCCCCceeEEEe
Q 016368 195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG-RFSREAVEAVGFKGNL-CMVNLKGNGAKDGAIYN 272 (390)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~-~~~r~~~~~~~~~g~l-yv~gg~g~~~~~~~~yd 272 (390)
+|+-++|++..+ ....++..|+.+.. =+++-..+.. .. +...+.-+..+ |+- ..+.....|
T Consensus 46 dG~kllF~s~~d-----g~~nly~lDL~t~~----i~QLTdg~g~~~~---g~~~s~~~~~~~Yv~-----~~~~l~~vd 108 (386)
T PF14583_consen 46 DGRKLLFASDFD-----GNRNLYLLDLATGE----ITQLTDGPGDNTF---GGFLSPDDRALYYVK-----NGRSLRRVD 108 (386)
T ss_dssp TS-EEEEEE-TT-----SS-EEEEEETTT-E----EEE---SS-B-TT---T-EE-TTSSEEEEEE-----TTTEEEEEE
T ss_pred CCCEEEEEeccC-----CCcceEEEEcccCE----EEECccCCCCCcc---ceEEecCCCeEEEEE-----CCCeEEEEE
Confidence 565555555432 35678999999998 6677665422 21 12222234454 444 456778888
Q ss_pred CCCCCeEecCCCCCCCCCCceEEE-eeCCeEEEEeCC---------C--------------CcEEEEECCCCceEEcccc
Q 016368 273 VELDKWKEMPEGMHAGWNGPAAST-MNEEELYVVNEG---------K--------------GRLSKYDADHDWWDEVIEL 328 (390)
Q Consensus 273 ~~~~~W~~~~~~~~~~~~~~~~~~-~~~g~lyv~gg~---------~--------------~~v~~yd~~~~~W~~i~~~ 328 (390)
+++.+=+.+-. .|....+....+ ..++..+ +|-. . ..+...|..+.+.+.+-.-
T Consensus 109 L~T~e~~~vy~-~p~~~~g~gt~v~n~d~t~~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~ 186 (386)
T PF14583_consen 109 LDTLEERVVYE-VPDDWKGYGTWVANSDCTKL-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED 186 (386)
T ss_dssp TTT--EEEEEE---TTEEEEEEEEE-TTSSEE-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE
T ss_pred CCcCcEEEEEE-CCcccccccceeeCCCccEE-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec
Confidence 88876555544 444444322222 1234443 2210 0 0677788888887777543
Q ss_pred cccccceeEEEECCEEEEEeeC------CceEEEEEcCCC
Q 016368 329 AELKGAEKITAARGRVCAVCEN------GERIMVVDVLAS 362 (390)
Q Consensus 329 p~~r~~~~~~~~~g~l~i~g~~------~~~v~~~d~~~~ 362 (390)
..-.......-.+..+.+++.. ...||++|....
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence 2211212222335566666532 236888886553
No 262
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=36.06 E-value=1.9e+02 Score=25.78 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=32.8
Q ss_pred eCCeEEEEeCCCCcEEEEECCCCceEEcccccc--------cccceeEEEE-CCEEEEEeeCCceEEEE
Q 016368 298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAE--------LKGAEKITAA-RGRVCAVCENGERIMVV 357 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~--------~r~~~~~~~~-~g~l~i~g~~~~~v~~~ 357 (390)
..|+||++...+..+.++|.+...-..+. +.. -+..-+++.- +|.|||+++ .+-+++|
T Consensus 181 ~t~~lliLS~es~~l~~~d~~G~~~~~~~-L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELDRQGRVVSSLS-LDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRF 247 (248)
T ss_dssp TTTEEEEEETTTTEEEEE-TT--EEEEEE--STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEE
T ss_pred CCCeEEEEECCCCeEEEECCCCCEEEEEE-eCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEe
Confidence 46899999998889999996644333222 211 1223445554 899999965 4466665
No 263
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=35.38 E-value=3.5e+02 Score=24.77 Aligned_cols=86 Identities=8% Similarity=0.070 Sum_probs=45.7
Q ss_pred EEeCCCCCeEecCCCCCCCCCCceEEE--eeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEE
Q 016368 270 IYNVELDKWKEMPEGMHAGWNGPAAST--MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVC 345 (390)
Q Consensus 270 ~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~ 345 (390)
+|.-.++.|.... ..++.+-+ .-++...+-.|.+..+..||.++.+=..-...-. ...-++... +-.+.
T Consensus 76 v~gdceN~~~lkg------HsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~-~~vNs~~p~rrg~~lv 148 (338)
T KOG0265|consen 76 VYGDCENFWVLKG------HSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT-SFVNSLDPSRRGPQLV 148 (338)
T ss_pred ccccccceeeecc------ccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccc-ceeeecCccccCCeEE
Confidence 4555666776542 22222222 3466666677788899999999876443321110 000011111 22233
Q ss_pred EEeeCCceEEEEEcCCC
Q 016368 346 AVCENGERIMVVDVLAS 362 (390)
Q Consensus 346 i~g~~~~~v~~~d~~~~ 362 (390)
.-|..+..+-+||+.++
T Consensus 149 ~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 149 CSGSDDGTLKLWDIRKK 165 (338)
T ss_pred EecCCCceEEEEeeccc
Confidence 33355668889999865
No 264
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=35.24 E-value=3e+02 Score=26.19 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=43.6
Q ss_pred eCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368 298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
.+|+-.+-|+.+..+..||+.|.+ .+..+.....-..++.+ +|+...-|..++.|-+||+++.
T Consensus 125 p~g~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 125 PTGSRLVTGSGDTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred CCCceEEecCCCceEEeeccCCCC--cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 467777888878888888888643 23333334444445544 7888887777889999998875
No 265
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=34.70 E-value=98 Score=18.10 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=6.6
Q ss_pred CCCCcEEEEECCCC
Q 016368 307 EGKGRLSKYDADHD 320 (390)
Q Consensus 307 g~~~~v~~yd~~~~ 320 (390)
..++.++.+|.++.
T Consensus 7 ~~~g~l~AlD~~TG 20 (38)
T PF01011_consen 7 TPDGYLYALDAKTG 20 (38)
T ss_dssp TTTSEEEEEETTTT
T ss_pred CCCCEEEEEECCCC
Confidence 34445555555443
No 266
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=34.47 E-value=90 Score=30.24 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=43.8
Q ss_pred eCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE---CCEEEEEeeCCceEEEEEcCCC
Q 016368 298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA---RGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~---~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
-.|.=++-.+++..+-.||.+|++-..--.+... ..++-. +..++++|+.+..|..||+.+.
T Consensus 268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~---~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKV---PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG 332 (503)
T ss_pred ccCCeeeeeecceeeeeeccccceEEEEEecCCC---ceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence 5677778888888999999999876544322211 123332 3489999988889999998874
No 267
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=34.19 E-value=82 Score=17.07 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=16.0
Q ss_pred eEEEeeCCeEEEEeCCCCcEEEE
Q 016368 293 AASTMNEEELYVVNEGKGRLSKY 315 (390)
Q Consensus 293 ~~~~~~~g~lyv~gg~~~~v~~y 315 (390)
++++..+|.|||..-....+++|
T Consensus 6 gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEEEE
T ss_pred EEEEeCCCCEEEEECCCCEEEEC
Confidence 34434689999998766677665
No 268
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=32.74 E-value=91 Score=24.77 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=38.7
Q ss_pred CCeEEEEeCCCCcEEEEECCCCc---eEEcccccccccceeEEEE---CCEEEEEeeCCceEEEEEcCCCCCcceEe
Q 016368 299 EEELYVVNEGKGRLSKYDADHDW---WDEVIELAELKGAEKITAA---RGRVCAVCENGERIMVVDVLASPARAWLV 369 (390)
Q Consensus 299 ~g~lyv~gg~~~~v~~yd~~~~~---W~~i~~~p~~r~~~~~~~~---~g~l~i~g~~~~~v~~~d~~~~~~~~W~~ 369 (390)
+..+.++|. ...+..||.+.|+ +++++ ..-....+..+ .+.+.++ +++.++.-||-..+. ..|.+
T Consensus 63 ~~D~LliGt-~t~llaYDV~~N~d~Fyke~~---DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e-~fWtV 133 (136)
T PF14781_consen 63 GRDCLLIGT-QTSLLAYDVENNSDLFYKEVP---DGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNE-IFWTV 133 (136)
T ss_pred CcCEEEEec-cceEEEEEcccCchhhhhhCc---cceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcE-EEEEe
Confidence 355666664 5589999999776 44443 22111122222 4567777 556689999987663 24765
No 269
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=32.42 E-value=3.9e+02 Score=24.35 Aligned_cols=119 Identities=12% Similarity=0.115 Sum_probs=61.8
Q ss_pred cceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCc
Q 016368 187 RWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAK 266 (390)
Q Consensus 187 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~ 266 (390)
..-+.+.-+.+.+++|+... +..-|-.-++ |++.-.... +.. -++..+.+.+=+++| ...
T Consensus 46 l~ia~~~~g~~gwlVg~rgt---------iletdd~g~t----w~qal~~~g-r~~--f~sv~f~~~egw~vG----e~s 105 (339)
T COG4447 46 LDIAFTESGSHGWLVGGRGT---------ILETDDGGIT----WAQALDFLG-RHA--FHSVSFLGMEGWIVG----EPS 105 (339)
T ss_pred cceeEeecCcceEEEcCcce---------EEEecCCccc----chhhhchhh-hhh--eeeeeeecccccccC----Ccc
Confidence 33444555778899988752 1222233445 886554321 220 244445555566663 112
Q ss_pred eeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC-eEEEEeCCCCcEEEEECCCCceEEccc
Q 016368 267 DGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKGRLSKYDADHDWWDEVIE 327 (390)
Q Consensus 267 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~~v~~yd~~~~~W~~i~~ 327 (390)
....-+-.-.+|..++.....+-.-.++.. +++ +-+++|. -+.|+.-+-....|+.+.+
T Consensus 106 qll~T~DgGqsWARi~~~e~~eg~~~sI~f-~d~q~g~m~gd-~Gail~T~DgGk~Wk~l~e 165 (339)
T COG4447 106 QLLHTTDGGQSWARIPLSEKLEGFPDSITF-LDDQRGEMLGD-QGAILKTTDGGKNWKALVE 165 (339)
T ss_pred eEEEecCCCcchhhchhhcCCCCCcceeEE-ecchhhhhhcc-cceEEEecCCcccHhHhcc
Confidence 222333345699998763322222334444 444 4444443 5566666666678998764
No 270
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=31.88 E-value=4.7e+02 Score=25.15 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=16.6
Q ss_pred CCEEEEEeccCCCCCCCccCeEEEEECCCCc
Q 016368 195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDR 225 (390)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~ 225 (390)
+|+....||.+. .+-++|+....
T Consensus 356 NGy~lATgs~Dn--------t~kVWDLR~r~ 378 (459)
T KOG0272|consen 356 NGYHLATGSSDN--------TCKVWDLRMRS 378 (459)
T ss_pred CceEEeecCCCC--------cEEEeeecccc
Confidence 777777777664 67788887665
No 271
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=31.83 E-value=4.4e+02 Score=24.80 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=52.3
Q ss_pred eEEEEECCEEEEEcccCCCCceeEEE-eCCC----C-CeEecCCCCCCC-----CCCceEEEeeCCeEEEEeCCC-----
Q 016368 246 VEAVGFKGNLCMVNLKGNGAKDGAIY-NVEL----D-KWKEMPEGMHAG-----WNGPAASTMNEEELYVVNEGK----- 309 (390)
Q Consensus 246 ~~~~~~~g~lyv~gg~g~~~~~~~~y-d~~~----~-~W~~~~~~~~~~-----~~~~~~~~~~~g~lyv~gg~~----- 309 (390)
.+++...+.+||. ....+..| |... + +-+.+...++.. .....++...+|.||+.-|..
T Consensus 75 ~Gi~~~~~GlyV~-----~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 75 TGLAVAVGGVYVA-----TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred cceeEecCCEEEe-----CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 4455444448887 44556656 3322 1 333333323332 112233333688999966621
Q ss_pred --------------CcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEE
Q 016368 310 --------------GRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAV 347 (390)
Q Consensus 310 --------------~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~ 347 (390)
+.+++||+.+...+.+.. ..|...+++.. .|.+|+.
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~--G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH--GFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEec--CcCCCccceECCCCCEEEE
Confidence 368999999888776653 24555555553 6777764
No 272
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=31.64 E-value=4e+02 Score=24.22 Aligned_cols=189 Identities=12% Similarity=0.143 Sum_probs=99.9
Q ss_pred ecCeEEEEEeecCCC-C----CCCCCcEEEeCCCCceec---CCCCC-CCCcceEEEEEC--------CEEEEEeccCCC
Q 016368 145 VRNNLVLIAATTPHF-L----PALASPLAFNPQSNTWFF---GPQLS-IPRRWCAMGSVG--------GVVYVASGVGAH 207 (390)
Q Consensus 145 ~~~~l~~~gG~~~~~-~----~~~~~~~~~dp~t~~W~~---~~~~~-~~r~~~~~~~~~--------~~lyv~GG~~~~ 207 (390)
.++.|+++=.|.... . .....++.||..|++-.+ +|+.- .+..+..-.+++ +.+|+.=
T Consensus 10 ~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD----- 84 (287)
T PF03022_consen 10 ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD----- 84 (287)
T ss_dssp TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE-----
T ss_pred CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC-----
Confidence 466788884443211 1 234579999999997643 33222 234444444442 3577752
Q ss_pred CCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEccc---------CCCCceeEEEeCCCCC-
Q 016368 208 YRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLK---------GNGAKDGAIYNVELDK- 277 (390)
Q Consensus 208 ~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~---------g~~~~~~~~yd~~~~~- 277 (390)
.....+.+||..+++. |+.+........ .......+|..+-.... ..++ ...-|.+-+..
T Consensus 85 ---~~~~glIV~dl~~~~s---~Rv~~~~~~~~p---~~~~~~i~g~~~~~~dg~~gial~~~~~d~-r~LYf~~lss~~ 154 (287)
T PF03022_consen 85 ---SGGPGLIVYDLATGKS---WRVLHNSFSPDP---DAGPFTIGGESFQWPDGIFGIALSPISPDG-RWLYFHPLSSRK 154 (287)
T ss_dssp ---TTTCEEEEEETTTTEE---EEEETCGCTTS----SSEEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT-SE
T ss_pred ---CCcCcEEEEEccCCcE---EEEecCCcceec---cccceeccCceEecCCCccccccCCCCCCc-cEEEEEeCCCCc
Confidence 2334899999999774 887766332221 23444566665543210 0011 22344443322
Q ss_pred eEecCC-----C--------------CCC-CCCCceEEEeeCCeEEEEeCCCCcEEEEECCC----CceEEcccccc-cc
Q 016368 278 WKEMPE-----G--------------MHA-GWNGPAASTMNEEELYVVNEGKGRLSKYDADH----DWWDEVIELAE-LK 332 (390)
Q Consensus 278 W~~~~~-----~--------------~~~-~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~----~~W~~i~~~p~-~r 332 (390)
+-.++. . ... +....+++...+|.||+-.-..+.|.++|+.+ .....+..-+. ..
T Consensus 155 ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~ 234 (287)
T PF03022_consen 155 LYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQ 234 (287)
T ss_dssp EEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GS
T ss_pred EEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceee
Confidence 222210 0 000 11122333335789998887788999999997 56777776665 55
Q ss_pred cceeEEEEC---CEEEEEe
Q 016368 333 GAEKITAAR---GRVCAVC 348 (390)
Q Consensus 333 ~~~~~~~~~---g~l~i~g 348 (390)
...++.... |.||++.
T Consensus 235 ~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 235 WPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SEEEEEE-T--TS-EEEEE
T ss_pred ccceeeeccccCceEEEEE
Confidence 666777766 8999985
No 273
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=31.62 E-value=1.3e+02 Score=30.51 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=43.4
Q ss_pred eeCCeEEEEeCCCCcEEEEECCCCceEEc--------cccc-ccccc-eeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368 297 MNEEELYVVNEGKGRLSKYDADHDWWDEV--------IELA-ELKGA-EKITAA-RGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 297 ~~~g~lyv~gg~~~~v~~yd~~~~~W~~i--------~~~p-~~r~~-~~~~~~-~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
.-+..+++-||-++.|+.||.++..=+.+ ..++ .++.. ++++.- .|.+++-|+..+.+.+||+.+.
T Consensus 127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~ 203 (735)
T KOG0308|consen 127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC 203 (735)
T ss_pred ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc
Confidence 36899999999999999999986532222 1233 33333 334333 3457776666778899998774
No 274
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=31.59 E-value=3.9e+02 Score=24.04 Aligned_cols=160 Identities=8% Similarity=0.001 Sum_probs=70.7
Q ss_pred eEEeecCeEEEEEeecCCCCCCCCCcEEEe---CCCCceec--CCCCCC-------CCcceEEEEECCEEEEEeccCCCC
Q 016368 141 QSLGVRNNLVLIAATTPHFLPALASPLAFN---PQSNTWFF--GPQLSI-------PRRWCAMGSVGGVVYVASGVGAHY 208 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~d---p~t~~W~~--~~~~~~-------~r~~~~~~~~~~~lyv~GG~~~~~ 208 (390)
+.-.+.++|+.+.-...-....+...+.|+ .....|+. ++..+. .-.-|+.+.+++.=|.+|-..+.
T Consensus 79 SMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD- 157 (367)
T PF12217_consen 79 SMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGD- 157 (367)
T ss_dssp -EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-S-
T ss_pred eeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCC-
Confidence 445566778777644322113333445555 35678865 444433 34568888888888888866542
Q ss_pred CCCccCeE-EEEECCC---CccccccEEcccCCCCCccccceEEEEECCEEEEEccc--C-CCCceeEEEeCCCCCeEec
Q 016368 209 RGDVARSM-KKWDLKS---DREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLK--G-NGAKDGAIYNVELDKWKEM 281 (390)
Q Consensus 209 ~~~~~~~~-~~yd~~t---~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~--g-~~~~~~~~yd~~~~~W~~~ 281 (390)
...+.+ ..|-+.. ..... =+.+++--..-.+ ..++-.++|++|+..-. + .-+.....-+.....|+.+
T Consensus 158 --~sPRe~G~~yfs~~~~sp~~~v-rr~i~sey~~~As--EPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~sl 232 (367)
T PF12217_consen 158 --VSPRELGFLYFSDAFASPGVFV-RRIIPSEYERNAS--EPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSL 232 (367)
T ss_dssp --SSS-EEEEEEETTTTT-TT--E-EEE--GGG-TTEE--EEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEE
T ss_pred --CCcceeeEEEecccccCCccee-eeechhhhccccc--cchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhc
Confidence 222222 2222211 00000 1222221111110 24455689999998422 1 1123344566667789886
Q ss_pred CCCCCCCCCCceEEEeeCCeEEEEeC
Q 016368 282 PEGMHAGWNGPAASTMNEEELYVVNE 307 (390)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~g~lyv~gg 307 (390)
.-+-.........+- .++.||+||.
T Consensus 233 rfp~nvHhtnlPFak-vgD~l~mFgs 257 (367)
T PF12217_consen 233 RFPNNVHHTNLPFAK-VGDVLYMFGS 257 (367)
T ss_dssp E-TT---SS---EEE-ETTEEEEEEE
T ss_pred cccccccccCCCcee-eCCEEEEEec
Confidence 542223333334444 8999999986
No 275
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=31.21 E-value=4.9e+02 Score=25.09 Aligned_cols=149 Identities=7% Similarity=0.076 Sum_probs=74.6
Q ss_pred eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCC---ceecCCCCCCCCcceEEEEECCE-EEEEeccCCCCCCCccCeE
Q 016368 141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSN---TWFFGPQLSIPRRWCAMGSVGGV-VYVASGVGAHYRGDVARSM 216 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~---~W~~~~~~~~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~ 216 (390)
+++...++.=++.|. +-..+..+|...+ .|+-+.. |+...-+...+|+ ++.++ . ...+
T Consensus 317 sc~W~pDg~~~V~Gs------~dr~i~~wdlDgn~~~~W~gvr~---~~v~dlait~Dgk~vl~v~-~--------d~~i 378 (519)
T KOG0293|consen 317 SCAWCPDGFRFVTGS------PDRTIIMWDLDGNILGNWEGVRD---PKVHDLAITYDGKYVLLVT-V--------DKKI 378 (519)
T ss_pred eeEEccCCceeEecC------CCCcEEEecCCcchhhccccccc---ceeEEEEEcCCCcEEEEEe-c--------ccce
Confidence 445555543333332 2256777777554 6776543 4443333344554 55554 2 2366
Q ss_pred EEEECCCCccccccEEcccCCCCCccccceE-EEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCC--CCCce
Q 016368 217 KKWDLKSDREDWKWEKKAQLKDGRFSREAVE-AVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAG--WNGPA 293 (390)
Q Consensus 217 ~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~-~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~--~~~~~ 293 (390)
..|+.++.. =+.+-....+. ++ ...-++++.++ +.....+..+|.+ .|..+..-+... ++-..
T Consensus 379 ~l~~~e~~~----dr~lise~~~i-----ts~~iS~d~k~~Lv---nL~~qei~LWDl~--e~~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 379 RLYNREARV----DRGLISEEQPI-----TSFSISKDGKLALV---NLQDQEIHLWDLE--ENKLVRKYFGHKQGHFIIR 444 (519)
T ss_pred eeechhhhh----hhccccccCce-----eEEEEcCCCcEEEE---EcccCeeEEeecc--hhhHHHHhhcccccceEEE
Confidence 778888776 23232222221 22 22357777777 2233456678887 444443212222 22112
Q ss_pred EEE-eeCCeEEEEeCCCCcEEEEECCCCc
Q 016368 294 AST-MNEEELYVVNEGKGRLSKYDADHDW 321 (390)
Q Consensus 294 ~~~-~~~g~lyv~gg~~~~v~~yd~~~~~ 321 (390)
.|. ..++...+-|..+++++.|+..+..
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGK 473 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCc
Confidence 221 1233455555566789998877654
No 276
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.95 E-value=4.3e+02 Score=24.43 Aligned_cols=27 Identities=7% Similarity=0.171 Sum_probs=16.8
Q ss_pred eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCC
Q 016368 141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSN 174 (390)
Q Consensus 141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~ 174 (390)
.++++. +.|++.|++. ..+.+||..++
T Consensus 47 tavAVs-~~~~aSGssD------etI~IYDm~k~ 73 (362)
T KOG0294|consen 47 TALAVS-GPYVASGSSD------ETIHIYDMRKR 73 (362)
T ss_pred eEEEec-ceeEeccCCC------CcEEEEeccch
Confidence 555554 4555555432 47999998766
No 277
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=30.76 E-value=3.8e+02 Score=23.68 Aligned_cols=63 Identities=10% Similarity=0.187 Sum_probs=37.3
Q ss_pred CCeEEEEeCCCCcEE--EEECCCCce-EEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCCC
Q 016368 299 EEELYVVNEGKGRLS--KYDADHDWW-DEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASP 363 (390)
Q Consensus 299 ~g~lyv~gg~~~~v~--~yd~~~~~W-~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~ 363 (390)
.+..+++......+. .|+...+.+ +.+.++..+.....+...++.|++-. .+...++|+.+..
T Consensus 103 ~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~--~~~f~~idl~~~~ 168 (275)
T PF00780_consen 103 EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGT--SKGFYLIDLNTGS 168 (275)
T ss_pred ccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEe--CCceEEEecCCCC
Confidence 344444444444444 444444567 67776666666667777777777742 4467777877543
No 278
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.25 E-value=6.5e+02 Score=26.23 Aligned_cols=133 Identities=11% Similarity=0.145 Sum_probs=63.5
Q ss_pred eEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCcee--EEEeCCCCCeEecCCC--------
Q 016368 215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDG--AIYNVELDKWKEMPEG-------- 284 (390)
Q Consensus 215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~--~~yd~~~~~W~~~~~~-------- 284 (390)
.+-++++...+ -..|..+..|-.+ .+..-+|+.-|+| ..++ ..|++...+...--..
T Consensus 433 KvRiWsI~d~~-Vv~W~Dl~~lITA-------vcy~PdGk~avIG-----t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 433 KVRLWSISDKK-VVDWNDLRDLITA-------VCYSPDGKGAVIG-----TFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred ceEEeecCcCe-eEeehhhhhhhee-------EEeccCCceEEEE-----EeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 56666665543 1227777765321 1222377777774 3333 3577666554331110
Q ss_pred CCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCce-EEccccccccc-ceeEEEECCEEEEEeeCCceEEEEEcCC
Q 016368 285 MHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWW-DEVIELAELKG-AEKITAARGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 285 ~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W-~~i~~~p~~r~-~~~~~~~~g~l~i~g~~~~~v~~~d~~~ 361 (390)
.....++...+. .+-.-.++...+..|.+||..+..- .++........ ..+-...+|+-.|.+..+..|++|+...
T Consensus 500 ~~~rITG~Q~~p-~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 500 QGKRITGLQFFP-GDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cCceeeeeEecC-CCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 001111222221 1222244444577899999854321 11111111111 1122223777777777788999998733
No 279
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=29.91 E-value=1.5e+02 Score=27.90 Aligned_cols=62 Identities=18% Similarity=0.122 Sum_probs=43.1
Q ss_pred EEEEeCCCCcEEEEECCCCceE-EcccccccccceeEEEE---CCEEEEEeeCCceEEEEEcCCCC
Q 016368 302 LYVVNEGKGRLSKYDADHDWWD-EVIELAELKGAEKITAA---RGRVCAVCENGERIMVVDVLASP 363 (390)
Q Consensus 302 lyv~gg~~~~v~~yd~~~~~W~-~i~~~p~~r~~~~~~~~---~g~l~i~g~~~~~v~~~d~~~~~ 363 (390)
+...|+.+|.+-++|..+-+-. .++.....+...+++.+ ++.++..++.+++|-+||++...
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 5677888888888888754433 23333344555555555 47888888888999999997754
No 280
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=28.97 E-value=4.7e+02 Score=24.18 Aligned_cols=156 Identities=12% Similarity=0.120 Sum_probs=75.3
Q ss_pred ccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE--ECCEEEEEcccCCCCce--eEEEeCCCCCeEe-cCCCCC
Q 016368 212 VARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG--FKGNLCMVNLKGNGAKD--GAIYNVELDKWKE-MPEGMH 286 (390)
Q Consensus 212 ~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~--~~g~lyv~gg~g~~~~~--~~~yd~~~~~W~~-~~~~~~ 286 (390)
.+..+..||..|-+ -.++.-|..... .+...+- -.+++|+.| .++ +..+|-.+++-.. +.. -.
T Consensus 236 dHp~~rlYdv~T~Q-----cfvsanPd~qht-~ai~~V~Ys~t~~lYvTa-----SkDG~IklwDGVS~rCv~t~~~-AH 303 (430)
T KOG0640|consen 236 DHPTLRLYDVNTYQ-----CFVSANPDDQHT-GAITQVRYSSTGSLYVTA-----SKDGAIKLWDGVSNRCVRTIGN-AH 303 (430)
T ss_pred CCCceeEEecccee-----EeeecCcccccc-cceeEEEecCCccEEEEe-----ccCCcEEeeccccHHHHHHHHh-hc
Confidence 44578899999876 234444443211 0122222 378999994 333 3456665554322 111 11
Q ss_pred CCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcc--ccccccccee--EEE--ECCEEEEEeeCCceEEEEEcC
Q 016368 287 AGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVI--ELAELKGAEK--ITA--ARGRVCAVCENGERIMVVDVL 360 (390)
Q Consensus 287 ~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~--~~p~~r~~~~--~~~--~~g~l~i~g~~~~~v~~~d~~ 360 (390)
.+-...++....||+-.+-.|.+..+..|...++.--+.- .-...|..+. .+. -++.+...-+..+++-.||-.
T Consensus 304 ~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 304 GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecccc
Confidence 1112222222367777777777776666666665543321 1011122121 111 133333332334567777765
Q ss_pred C-----------CCCcceEecCCCCeeEEE
Q 016368 361 A-----------SPARAWLVDPPRGFQVVA 379 (390)
Q Consensus 361 ~-----------~~~~~W~~~~p~g~~~~~ 379 (390)
+ +.+-+|.+..|.+=..++
T Consensus 384 tadr~~l~slgHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 384 TADRVALLSLGHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred chhhhhhcccCCCCCceEEEeCCCCCceee
Confidence 5 233467777774443443
No 281
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=28.93 E-value=4.2e+02 Score=25.51 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=42.4
Q ss_pred eeCCeEEEEeCCCCcEEEEECCCCceEEccccccc--ccce---eEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368 297 MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAEL--KGAE---KITAARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 297 ~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~--r~~~---~~~~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
..+..+|..-|.++.+..+|..+ |+.-...... -... .+.-+++.|...|+.++.|.+||+..-
T Consensus 237 ~~h~~lF~sv~dd~~L~iwD~R~--~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL 305 (422)
T KOG0264|consen 237 PLHEDLFGSVGDDGKLMIWDTRS--NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL 305 (422)
T ss_pred ccchhhheeecCCCeEEEEEcCC--CCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc
Confidence 36778888888888999999886 4322211111 1111 222347888888888889999999875
No 282
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=28.92 E-value=4.7e+02 Score=24.14 Aligned_cols=30 Identities=23% Similarity=0.159 Sum_probs=18.3
Q ss_pred EEEECCEEEEEcccCCCCceeEEEeCCCCCeE
Q 016368 248 AVGFKGNLCMVNLKGNGAKDGAIYNVELDKWK 279 (390)
Q Consensus 248 ~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~ 279 (390)
++-.+|.+|+.. ..++..+.+|++.-..=.
T Consensus 219 ~vDadG~lw~~a--~~~g~~v~~~~pdG~l~~ 248 (307)
T COG3386 219 AVDADGNLWVAA--VWGGGRVVRFNPDGKLLG 248 (307)
T ss_pred EEeCCCCEEEec--ccCCceEEEECCCCcEEE
Confidence 444688888653 113357889999833333
No 283
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=28.28 E-value=6.9e+02 Score=25.95 Aligned_cols=59 Identities=8% Similarity=0.088 Sum_probs=29.7
Q ss_pred EEEEeCCCCcEEEEECCCCceEEccccc-ccccceeEE-EECCEEEEEeeCCceEEEEEcCC
Q 016368 302 LYVVNEGKGRLSKYDADHDWWDEVIELA-ELKGAEKIT-AARGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 302 lyv~gg~~~~v~~yd~~~~~W~~i~~~p-~~r~~~~~~-~~~g~l~i~g~~~~~v~~~d~~~ 361 (390)
.++..|.++.+..+|.++..-.....-+ .+...+.+. ...+++.++ ....++++||..+
T Consensus 252 ~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~v-taeQnl~l~d~~~ 312 (775)
T KOG0319|consen 252 YIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLV-TAEQNLFLYDEDE 312 (775)
T ss_pred EEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEE-EccceEEEEEccc
Confidence 4455556778888888875443333222 111222222 224444444 4445666665444
No 284
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=28.09 E-value=7.1e+02 Score=26.01 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=18.8
Q ss_pred ccceeEEE-E-CCEEEEEeeCCceEEEEEcCCC
Q 016368 332 KGAEKITA-A-RGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 332 r~~~~~~~-~-~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
|.++.+.. . +|+-..-|..++++-+||+...
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l 491 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL 491 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhh
Confidence 44444333 3 5555555555778999998774
No 285
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=27.80 E-value=2.8e+02 Score=21.24 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=39.3
Q ss_pred eEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCCCCcceEec
Q 016368 301 ELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVD 370 (390)
Q Consensus 301 ~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~~ 370 (390)
.=.++|..+..|.+|+-+.-.+ ++...-....++.+.+.-+.++-.+..|=+||-... .|.+.
T Consensus 16 ~eLlvGs~D~~IRvf~~~e~~~----Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R---lWRiK 78 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDEIVA----EITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR---LWRIK 78 (111)
T ss_pred ceEEEecCCcEEEEEeCCcEEE----EEecccceEEEEEcCCCEEEEEecCCEEEEEeCcce---eeeec
Confidence 3445666677999998774333 233333334566666666777666678888876554 78764
No 286
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=27.75 E-value=4.5e+02 Score=23.63 Aligned_cols=155 Identities=14% Similarity=0.199 Sum_probs=74.1
Q ss_pred ceEEEEECCEEEEEeccCCCCCCCccCeEEEEEC---CCCccccccEE--cccCCCC----CccccceEEEEECCEEEEE
Q 016368 188 WCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDL---KSDREDWKWEK--KAQLKDG----RFSREAVEAVGFKGNLCMV 258 (390)
Q Consensus 188 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~---~t~~~~~~W~~--~~~~~~~----~~~r~~~~~~~~~g~lyv~ 258 (390)
..++.+++++||.+--.... ........+.||- ..+. |+. ++..+.. .+...-|+-+.+++.-|.+
T Consensus 77 CmSMGv~~NRLfa~iEtR~~-a~~km~~~~Lw~RpMF~~sp----W~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~ 151 (367)
T PF12217_consen 77 CMSMGVVGNRLFAVIETRTV-ASNKMVRAELWSRPMFHDSP----WRITELGTIASFTSAGVAVTELHSFATIDDNQFAV 151 (367)
T ss_dssp -B-EEEETTEEEEEEEEEET-TT--EEEEEEEEEE-STTS------EEEEEES-TT--------SEEEEEEE-SSS-EEE
T ss_pred eeeeeeecceeeEEEeehhh-hhhhhhhhhhhcccccccCC----ceeeecccccccccccceeeeeeeeeEecCCceeE
Confidence 45688999999987653221 1234445666663 5667 875 3333321 1112247777888888888
Q ss_pred ccc-CCCC-ce-eEEEeCC-----CCC-eEecCCCCCCCCCCceEEEeeCCeEEEEeCCC-----C-cEEEEECCCCceE
Q 016368 259 NLK-GNGA-KD-GAIYNVE-----LDK-WKEMPEGMHAGWNGPAASTMNEEELYVVNEGK-----G-RLSKYDADHDWWD 323 (390)
Q Consensus 259 gg~-g~~~-~~-~~~yd~~-----~~~-W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~-----~-~v~~yd~~~~~W~ 323 (390)
|-. |.-+ +. +..|-+. ... =+.++......-..+++-. .+|.||+..... | .+.+-+.....|.
T Consensus 152 GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvky-Y~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~ 230 (367)
T PF12217_consen 152 GYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKY-YDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWS 230 (367)
T ss_dssp EEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEE-ETTEEEEEEEES-TTS---EEEEESSTTSS-E
T ss_pred EeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhh-hCCEEEEEEcCcCCCCCcceeeeecccCCchh
Confidence 532 2212 22 2333221 111 1223321222222344554 899999986421 1 6677777778898
Q ss_pred Ecccc-cccccceeEEEECCEEEEEe
Q 016368 324 EVIEL-AELKGAEKITAARGRVCAVC 348 (390)
Q Consensus 324 ~i~~~-p~~r~~~~~~~~~g~l~i~g 348 (390)
.+.-. ......--++..++.||++|
T Consensus 231 slrfp~nvHhtnlPFakvgD~l~mFg 256 (367)
T PF12217_consen 231 SLRFPNNVHHTNLPFAKVGDVLYMFG 256 (367)
T ss_dssp EEE-TT---SS---EEEETTEEEEEE
T ss_pred hccccccccccCCCceeeCCEEEEEe
Confidence 87521 12223345777899999999
No 287
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=26.84 E-value=6.4e+02 Score=25.04 Aligned_cols=199 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred cccccCCCceEEeecCeEEEEEeecCCC---CCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCC-
Q 016368 132 SFLSRKLPVQSLGVRNNLVLIAATTPHF---LPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAH- 207 (390)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~~gG~~~~~---~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~- 207 (390)
.|.++.+..-++.++-..+.++-+-... .+...++.++|..+- ..|+|+|+.+..
T Consensus 99 ~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L---------------------~TL~V~g~f~~GV 157 (626)
T KOG2106|consen 99 HYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTL---------------------STLHVIGFFDRGV 157 (626)
T ss_pred cccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccc---------------------eeeeeeccccccc
Q ss_pred -----CCCCccCeEEEEECCCCcc--ccccEEcccCCCCCccccceEEEEE----CCEEEEEcccCCCCceeEEEeCCCC
Q 016368 208 -----YRGDVARSMKKWDLKSDRE--DWKWEKKAQLKDGRFSREAVEAVGF----KGNLCMVNLKGNGAKDGAIYNVELD 276 (390)
Q Consensus 208 -----~~~~~~~~~~~yd~~t~~~--~~~W~~~~~~~~~~~~r~~~~~~~~----~g~lyv~gg~g~~~~~~~~yd~~~~ 276 (390)
.....-+.+.+-|-....+ .|.|++-.....-...-.....+.+ .+-+..+ |.....-++++++
T Consensus 158 ~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~-----Gk~H~~Fw~~~~~ 232 (626)
T KOG2106|consen 158 TCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITC-----GKGHLYFWTLRGG 232 (626)
T ss_pred eeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEe-----CCceEEEEEccCC
Q ss_pred CeEecCCCCCCCCCCceEEE-eeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceE
Q 016368 277 KWKEMPEGMHAGWNGPAAST-MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERI 354 (390)
Q Consensus 277 ~W~~~~~~~~~~~~~~~~~~-~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v 354 (390)
...+....+.....-...++ -..+-=.+-|..+|.+.+|++.++.-++-.. ....+.++++.+ +|+|.- |+.+..|
T Consensus 233 ~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki 310 (626)
T KOG2106|consen 233 SLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKI 310 (626)
T ss_pred ceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCccceE
Q ss_pred EEEE
Q 016368 355 MVVD 358 (390)
Q Consensus 355 ~~~d 358 (390)
..||
T Consensus 311 ~~Wd 314 (626)
T KOG2106|consen 311 ILWD 314 (626)
T ss_pred Eecc
No 288
>PRK10115 protease 2; Provisional
Probab=26.74 E-value=7.5e+02 Score=25.81 Aligned_cols=182 Identities=10% Similarity=0.042 Sum_probs=89.2
Q ss_pred CCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccE--EcccCCC
Q 016368 163 LASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWE--KKAQLKD 238 (390)
Q Consensus 163 ~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~--~~~~~~~ 238 (390)
-.++++.|+.++.. ++....... ...+.. ++ .+|+..- ... ......++.+++.|+. -+ .+-.-..
T Consensus 152 ~~~l~v~d~~tg~~--l~~~i~~~~-~~~~w~~D~~~~~y~~~-~~~--~~~~~~v~~h~lgt~~----~~d~lv~~e~~ 221 (686)
T PRK10115 152 QYGIRFRNLETGNW--YPELLDNVE-PSFVWANDSWTFYYVRK-HPV--TLLPYQVWRHTIGTPA----SQDELVYEEKD 221 (686)
T ss_pred EEEEEEEECCCCCC--CCccccCcc-eEEEEeeCCCEEEEEEe-cCC--CCCCCEEEEEECCCCh----hHCeEEEeeCC
Confidence 34688899988742 222111111 333333 44 4544433 220 1234789999999884 21 2221111
Q ss_pred CCccccceEEEEE-CCEEEEEcccCCCCceeEEEeC--CCCCeE-ecCCCCCCCCCCceEEEeeCCeEEEEeCCC---Cc
Q 016368 239 GRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNV--ELDKWK-EMPEGMHAGWNGPAASTMNEEELYVVNEGK---GR 311 (390)
Q Consensus 239 ~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~--~~~~W~-~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~---~~ 311 (390)
... ....... +++..++............|+. .+..|. .++. ..... ..... .++.+|+....+ ..
T Consensus 222 ~~~---~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~--~~~~~-~~~~ly~~tn~~~~~~~ 294 (686)
T PRK10115 222 DTF---YVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR-RKDHE--YSLDH-YQHRFYLRSNRHGKNFG 294 (686)
T ss_pred CCE---EEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC-CCCCE--EEEEe-CCCEEEEEEcCCCCCce
Confidence 111 1222223 5554445322222344566773 234443 3332 21211 22223 578888876532 27
Q ss_pred EEEEECC-CCceEEcccccccccceeEEEECCEEEEEeeCCc--eEEEEEcCC
Q 016368 312 LSKYDAD-HDWWDEVIELAELKGAEKITAARGRVCAVCENGE--RIMVVDVLA 361 (390)
Q Consensus 312 v~~yd~~-~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~--~v~~~d~~~ 361 (390)
+...+.. +..|+.+-+......--.+...++.|++....+. .++++|..+
T Consensus 295 l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~ 347 (686)
T PRK10115 295 LYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKT 347 (686)
T ss_pred EEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCC
Confidence 7888877 5789887644222222345555777777754322 566777643
No 289
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=26.66 E-value=85 Score=28.13 Aligned_cols=20 Identities=30% Similarity=0.172 Sum_probs=17.6
Q ss_pred cCCCCCCcHHHHHHHHhcCC
Q 016368 31 LLLLPGLPNHLADRCLSSLP 50 (390)
Q Consensus 31 ~~~~~~LP~dl~~~iL~rLP 50 (390)
...+..||.|++.+||.|||
T Consensus 199 ~ltl~dLP~e~vl~Il~rls 218 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLS 218 (332)
T ss_pred CCCcccchHHHHHHHHHHcc
Confidence 44567899999999999999
No 290
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=26.00 E-value=4.6e+02 Score=27.58 Aligned_cols=60 Identities=7% Similarity=0.149 Sum_probs=35.2
Q ss_pred eCCeEEEEeCCCCcEEEEECCCCceEEc-ccccccccceeEEEECCEEEEEeeCCceEEEEEc
Q 016368 298 NEEELYVVNEGKGRLSKYDADHDWWDEV-IELAELKGAEKITAARGRVCAVCENGERIMVVDV 359 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i-~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~ 359 (390)
.+|.-.+-||..+.+.+|..+|++ ++. +.|..+- -+-++..++.+|.+.-.++++.++..
T Consensus 261 ~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I-~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 261 SDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPI-LHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred cCCceEeecccceEEEEEeecCCC-cccccccCCee-EEEEEcCCCCeEEEEecCceEEEEec
Confidence 788878889999999999999988 443 3332221 12222234555544444555555543
No 291
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=25.93 E-value=4.1e+02 Score=22.55 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=44.4
Q ss_pred ceeEEEeCCCCCeEecCCCCCCCCCCce-EEEeeCCeEEEEeC-C------CCcEEEEECCCCceEEcccccccc-ccee
Q 016368 266 KDGAIYNVELDKWKEMPEGMHAGWNGPA-ASTMNEEELYVVNE-G------KGRLSKYDADHDWWDEVIELAELK-GAEK 336 (390)
Q Consensus 266 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~g~lyv~gg-~------~~~v~~yd~~~~~W~~i~~~p~~r-~~~~ 336 (390)
..++++|..++.|..+..........+- +...-+..|.++-| . .|.++.|++.++.=..+-+..... ....
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkkqQVis 167 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKKQQVIS 167 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccccceeEEE
Confidence 4566888888877655321222223332 22224555555444 2 348999999999888777654432 2233
Q ss_pred EEEECCEEEE
Q 016368 337 ITAARGRVCA 346 (390)
Q Consensus 337 ~~~~~g~l~i 346 (390)
+.-.++.|-+
T Consensus 168 ~e~~gd~L~L 177 (200)
T PF15525_consen 168 AEKNGDNLNL 177 (200)
T ss_pred EEEeCCEEEE
Confidence 3334555433
No 292
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=25.76 E-value=5.2e+02 Score=23.61 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=57.3
Q ss_pred EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceE---EEeeCCeEEEEeCCCCcEEEEECCCCceEEccccccc
Q 016368 255 LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAA---STMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAEL 331 (390)
Q Consensus 255 lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~---~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~ 331 (390)
+++.|++| .....+..-+.|+.++.+....+..... ...-.+.+||.|. .+.+..=--...+|.+....+..
T Consensus 228 ~la~g~qg----~~f~~~~~gD~wsd~~~~~~~g~~~~Gl~d~a~~a~~~v~v~G~-gGnvl~StdgG~t~skd~g~~er 302 (339)
T COG4447 228 LLARGGQG----DQFSWVCGGDEWSDQGEPVNLGRRSWGLLDFAPRAPPEVWVSGI-GGNVLASTDGGTTWSKDGGVEER 302 (339)
T ss_pred eEEEcccc----ceeecCCCcccccccccchhcccCCCccccccccCCCCeEEecc-CccEEEecCCCeeEeccCChhhh
Confidence 55665332 3455666778999887643333322211 1125788888886 44555544445679877655443
Q ss_pred cc-ceeEEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368 332 KG-AEKITAA-RGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 332 r~-~~~~~~~-~g~l~i~g~~~~~v~~~d~~~ 361 (390)
.. -++++.. .+..+++ +.+.-+..|+...
T Consensus 303 ~s~l~~V~~ts~~~~~l~-Gq~Gvll~~n~~a 333 (339)
T COG4447 303 VSNLYSVVFTSPKAGFLC-GQKGVLLKYNPGA 333 (339)
T ss_pred hhhhheEEeccCCceEEE-cCCceEEEecCcc
Confidence 33 2344444 5667777 5555666776544
No 293
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.75 E-value=3.3e+02 Score=25.05 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=24.4
Q ss_pred CCeEEEEeCCCC-------cEEEEECCCCceEEcccccc
Q 016368 299 EEELYVVNEGKG-------RLSKYDADHDWWDEVIELAE 330 (390)
Q Consensus 299 ~g~lyv~gg~~~-------~v~~yd~~~~~W~~i~~~p~ 330 (390)
...++.+|..+. .||.|+...++|.++.+++.
T Consensus 183 ~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 183 HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 456667776441 78889999999999998873
No 294
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=25.41 E-value=7.7e+02 Score=25.48 Aligned_cols=64 Identities=8% Similarity=0.139 Sum_probs=35.6
Q ss_pred ccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEE----eCCCCCeEecCC
Q 016368 212 VARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIY----NVELDKWKEMPE 283 (390)
Q Consensus 212 ~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~y----d~~~~~W~~~~~ 283 (390)
....+++++...-. ..|+.+.+-+... .+.+...++.+|+.. +..+++..++ ++....|+++-+
T Consensus 246 ~tsE~~ll~a~~p~--~~p~vv~pr~~g~----eY~~eh~~d~f~i~s--N~~gknf~l~~ap~~~~~~~w~~~I~ 313 (682)
T COG1770 246 ITSEVRLLDADDPE--AEPKVVLPRENGV----EYSVEHGGDRFYILS--NADGKNFKLVRAPVSADKSNWRELIP 313 (682)
T ss_pred cceeEEEEecCCCC--CceEEEEEcCCCc----EEeeeecCcEEEEEe--cCCCcceEEEEccCCCChhcCeeeec
Confidence 34567777765543 1266665555443 266666677788774 2223333322 555678987654
No 295
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=25.36 E-value=1.3e+02 Score=16.49 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=18.6
Q ss_pred ECCEEEEEeeCCceEEEEEcCCCCCcceEe
Q 016368 340 ARGRVCAVCENGERIMVVDVLASPARAWLV 369 (390)
Q Consensus 340 ~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~ 369 (390)
.+|.+|+. ..+..++.+|..+.. ..|+.
T Consensus 5 ~~~~v~~~-~~~g~l~a~d~~~G~-~~W~~ 32 (33)
T smart00564 5 SDGTVYVG-STDGTLYALDAKTGE-ILWTY 32 (33)
T ss_pred ECCEEEEE-cCCCEEEEEEcccCc-EEEEc
Confidence 45566664 666799999987643 35763
No 296
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=24.53 E-value=3.4e+02 Score=27.63 Aligned_cols=58 Identities=7% Similarity=0.054 Sum_probs=38.6
Q ss_pred CCceeEEEeCCCCCeEecCCCCCCCCCCceEEE-eeCCeEEEEeCCCCcEEEEECCCCc
Q 016368 264 GAKDGAIYNVELDKWKEMPEGMHAGWNGPAAST-MNEEELYVVNEGKGRLSKYDADHDW 321 (390)
Q Consensus 264 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~g~lyv~gg~~~~v~~yd~~~~~ 321 (390)
|..+...+|.++.+-..............++|. ..|-.+|+.||.++.+..||...+.
T Consensus 120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 556777899888876655432223333333333 3678899999999988888876544
No 297
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=24.40 E-value=4.3e+02 Score=23.51 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=37.2
Q ss_pred CCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEee-CCceEEEEEcC
Q 016368 299 EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCE-NGERIMVVDVL 360 (390)
Q Consensus 299 ~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~-~~~~v~~~d~~ 360 (390)
++.||++....+.++.|+.+.+.=++++ +......=+++.+++..|++.. ....++.+++.
T Consensus 33 ~~tLfaV~d~~~~i~els~~G~vlr~i~-l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 33 TGTLFAVQDEPGEIYELSLDGKVLRRIP-LDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp TTEEEEEETTTTEEEEEETT--EEEEEE--SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred CCeEEEEECCCCEEEEEcCCCCEEEEEe-CCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4789999988889999998755433333 2222334467777766777654 35577777763
No 298
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=24.39 E-value=4.1e+02 Score=27.15 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=39.0
Q ss_pred CCcEEEeCCCCce--ecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCc
Q 016368 164 ASPLAFNPQSNTW--FFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDR 225 (390)
Q Consensus 164 ~~~~~~dp~t~~W--~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~ 225 (390)
..+.+|+|..+.= ++-+.....|..-..-+++|++.++.|++.. ..+.+.+||-++-.
T Consensus 742 g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~----SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS----SERQVQMYDAQTLD 801 (1012)
T ss_pred ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc----chhhhhhhhhhhcc
Confidence 3588899987642 2222222345555566779999999998753 56688889987765
No 299
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.03 E-value=6.3e+02 Score=24.05 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=69.7
Q ss_pred CCCCcEEEeCCCC--ceec--CCC----CCCCCcceEEEEECC---EEEEEeccCCCCCCCccCeEEEEECCCCcccccc
Q 016368 162 ALASPLAFNPQSN--TWFF--GPQ----LSIPRRWCAMGSVGG---VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKW 230 (390)
Q Consensus 162 ~~~~~~~~dp~t~--~W~~--~~~----~~~~r~~~~~~~~~~---~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W 230 (390)
..+.+.+||.... .|+. +|+ |-.|.-...+..+.+ +-++.+ .....+-.||+..+.
T Consensus 171 ~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~--------T~~hqvR~YDt~~qR----- 237 (412)
T KOG3881|consen 171 NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI--------TRYHQVRLYDTRHQR----- 237 (412)
T ss_pred cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE--------ecceeEEEecCcccC-----
Confidence 3567777887644 5654 332 112333334444433 223322 123477889999776
Q ss_pred EEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCc--eEEEeeC-CeEEEEeC
Q 016368 231 EKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGP--AASTMNE-EELYVVNE 307 (390)
Q Consensus 231 ~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~--~~~~~~~-g~lyv~gg 307 (390)
+.+......-.+- .+..-...+.+.++| +.......||..++.--...- .+..+. ++.+ .. ..+...+|
T Consensus 238 RPV~~fd~~E~~i-s~~~l~p~gn~Iy~g---n~~g~l~~FD~r~~kl~g~~~---kg~tGsirsih~-hp~~~~las~G 309 (412)
T KOG3881|consen 238 RPVAQFDFLENPI-SSTGLTPSGNFIYTG---NTKGQLAKFDLRGGKLLGCGL---KGITGSIRSIHC-HPTHPVLASCG 309 (412)
T ss_pred cceeEeccccCcc-eeeeecCCCcEEEEe---cccchhheecccCceeecccc---CCccCCcceEEE-cCCCceEEeec
Confidence 5555544321110 122223355544442 123345689987765332211 122211 2232 33 35777888
Q ss_pred CCCcEEEEECCCC
Q 016368 308 GKGRLSKYDADHD 320 (390)
Q Consensus 308 ~~~~v~~yd~~~~ 320 (390)
-+..+.+||.+++
T Consensus 310 LDRyvRIhD~ktr 322 (412)
T KOG3881|consen 310 LDRYVRIHDIKTR 322 (412)
T ss_pred cceeEEEeecccc
Confidence 8889999999974
No 300
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=23.91 E-value=1.8e+02 Score=25.51 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=46.9
Q ss_pred ECCEEEEEcccCCCCceeEEE---eCCCCCeEecCCCCCCC-CC-CceEEEeeCCeEEEEeCCCCcEEEE---ECCCCce
Q 016368 251 FKGNLCMVNLKGNGAKDGAIY---NVELDKWKEMPEGMHAG-WN-GPAASTMNEEELYVVNEGKGRLSKY---DADHDWW 322 (390)
Q Consensus 251 ~~g~lyv~gg~g~~~~~~~~y---d~~~~~W~~~~~~~~~~-~~-~~~~~~~~~g~lyv~gg~~~~v~~y---d~~~~~W 322 (390)
-+++||.+- ......+ -...++|...+.....+ +. ...+++.-+|.||.+.. ++++++. +..+..|
T Consensus 43 P~g~lY~I~-----~~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~-~G~lyR~~~~~~~~~~W 116 (229)
T PF14517_consen 43 PNGRLYAIR-----NDGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTP-DGKLYRHPRPTNGSDNW 116 (229)
T ss_dssp TTS-EEEEE-----TTEEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEET-T-EEEEES---STT--H
T ss_pred CCceEEEEE-----CCceEEecCCccCcccccccCcccccCcccceeEEEecCCccEEEecc-ccceeeccCCCccCcch
Confidence 488888882 2234444 23355665433323333 22 12333336799998886 5666555 4455678
Q ss_pred EE-ccccc-cc-ccceeEEE--ECCEEEEEeeCCceEEEEEcCCCCCcceE
Q 016368 323 DE-VIELA-EL-KGAEKITA--ARGRVCAVCENGERIMVVDVLASPARAWL 368 (390)
Q Consensus 323 ~~-i~~~p-~~-r~~~~~~~--~~g~l~i~g~~~~~v~~~d~~~~~~~~W~ 368 (390)
.. .++.- .. -..+..+. -+|.||.|- .+..++-..........|.
T Consensus 117 ~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~-~dg~~~~~~~p~~~~~~W~ 166 (229)
T PF14517_consen 117 IGGSGKKIGGTGWNDFDAVFAGPNGVLYAIT-PDGRLYRRYRPDGGSDRWL 166 (229)
T ss_dssp HH-HSEEEE-SSGGGEEEEEE-TTS-EEEEE-TTE-EEEE---SSTT--HH
T ss_pred hhccceecccCCCccceEEEeCCCccEEEEc-CCCceEEeCCCCCCCCccc
Confidence 64 22211 11 12233332 378899994 4446666644444445664
No 301
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=23.33 E-value=1.6e+02 Score=17.02 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=17.3
Q ss_pred CCeEEEEeCCCCcEEEEECCCCc
Q 016368 299 EEELYVVNEGKGRLSKYDADHDW 321 (390)
Q Consensus 299 ~g~lyv~gg~~~~v~~yd~~~~~ 321 (390)
+++||+.....+.+.++|..+.+
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~ 25 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNK 25 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCe
Confidence 56788877777788889987543
No 302
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=23.32 E-value=2.3e+02 Score=25.77 Aligned_cols=56 Identities=27% Similarity=0.533 Sum_probs=33.9
Q ss_pred eEEEEECCEEEEEcccCCCCceeEEEeCCCC---CeEecCCCCCC---CCCCceEEEeeCCeEEEEeC
Q 016368 246 VEAVGFKGNLCMVNLKGNGAKDGAIYNVELD---KWKEMPEGMHA---GWNGPAASTMNEEELYVVNE 307 (390)
Q Consensus 246 ~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~---~W~~~~~~~~~---~~~~~~~~~~~~g~lyv~gg 307 (390)
...+++||++|.+ +.+++.+|....+ -|..+..+-.. +.-.-=+++ .+++|||-+-
T Consensus 57 SELv~FngkLys~-----DDrTGiVyeI~~~~~vPwviL~dGdG~~~kGfK~EWaTV-Kd~~LyvGs~ 118 (291)
T PF06079_consen 57 SELVVFNGKLYSF-----DDRTGIVYEIKGDKAVPWVILSDGDGNTSKGFKAEWATV-KDDKLYVGSI 118 (291)
T ss_dssp EEEEEETTEEEEE-----ETTT-EEEEEETTEEEEEEE-BSTTTTESSB----EEEE-ETTEEEEE--
T ss_pred eeeeeECCEEeee-----eCCCceEEEEeCCceeceEEEeCCCCCccccccceeeEE-eCCeeeeccC
Confidence 5678899999999 7888888888766 36666553211 111122444 8999997653
No 303
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=23.05 E-value=6.1e+02 Score=23.54 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=37.3
Q ss_pred eCCeEEEEeCCCCcEEEEECCCCc---eEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcC
Q 016368 298 NEEELYVVNEGKGRLSKYDADHDW---WDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVL 360 (390)
Q Consensus 298 ~~g~lyv~gg~~~~v~~yd~~~~~---W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~ 360 (390)
-.|+..+.|...|.+.+||.++-+ |-++..... --.-.+...|+-+++...+.-|-+||++
T Consensus 163 r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~--IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 163 RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQA--IKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred CCCCEEEEecCcceEEEEecchheeeeeeeechhee--eeEEEEeccCcEEEEecCCceEEEEehh
Confidence 567777778788899999998753 333332111 1122344567777775555566677765
No 304
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=22.76 E-value=4.1e+02 Score=26.62 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=41.3
Q ss_pred eeCCeEEEEeCCCCcEEEEECCCCceEEccccccc--ccceeEEE--E-CCEEEEEeeCCceEEEEEcCC
Q 016368 297 MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAEL--KGAEKITA--A-RGRVCAVCENGERIMVVDVLA 361 (390)
Q Consensus 297 ~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~--r~~~~~~~--~-~g~l~i~g~~~~~v~~~d~~~ 361 (390)
..+|.+.+-|..+-.+.+||+-. -+.+..+... ..-++... . +++|.+-|.++..|.++|+..
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~--~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFE--YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred cCCCCEEeecCCcceEEeecchh--cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 45788888887777888998873 3333333221 12233222 2 889999888888899999875
No 305
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=22.53 E-value=1e+03 Score=25.92 Aligned_cols=129 Identities=11% Similarity=0.193 Sum_probs=74.3
Q ss_pred CCCCcEEEeCCC-CceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368 162 ALASPLAFNPQS-NTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR 240 (390)
Q Consensus 162 ~~~~~~~~dp~t-~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~ 240 (390)
....+.+|.... ++-+.+..+...-+-.+.+.++|++.+. ....+..|+..++.. -+.-.+...+.
T Consensus 805 ~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~----------In~~vrLye~t~~~e---Lr~e~~~~~~~ 871 (1096)
T KOG1897|consen 805 VNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAG----------INQSVRLYEWTTERE---LRIECNISNPI 871 (1096)
T ss_pred ccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEe----------cCcEEEEEEccccce---ehhhhcccCCe
Confidence 445677777665 6667676665555566777778887753 334677888777630 11111111111
Q ss_pred ccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC
Q 016368 241 FSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG 310 (390)
Q Consensus 241 ~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~ 310 (390)
. ....-+.++.+++-- -...-....|+...+...+++......+....-. +++..|+.+-..+
T Consensus 872 ~---aL~l~v~gdeI~VgD--lm~Sitll~y~~~eg~f~evArD~~p~Wmtavei--l~~d~ylgae~~g 934 (1096)
T KOG1897|consen 872 I---ALDLQVKGDEIAVGD--LMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEI--LDDDTYLGAENSG 934 (1096)
T ss_pred E---EEEEEecCcEEEEee--ccceEEEEEEeccCCceEEeehhhCccceeeEEE--ecCceEEeecccc
Confidence 1 123334566777641 0012344589999999999887554444332222 7888888776665
No 306
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=22.41 E-value=4.7e+02 Score=21.98 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=46.1
Q ss_pred CCeEEEEeC-CCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCC---ceEEEEEcCCCC-----CcceEe
Q 016368 299 EEELYVVNE-GKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENG---ERIMVVDVLASP-----ARAWLV 369 (390)
Q Consensus 299 ~g~lyv~gg-~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~---~~v~~~d~~~~~-----~~~W~~ 369 (390)
+.++.++-| ....+..||.+ ...+..++......-.-.-.|+..++++-+ ..+.+||+.+.. .+...+
T Consensus 71 g~~favi~g~~~~~v~lyd~~---~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t 147 (194)
T PF08662_consen 71 GNEFAVIYGSMPAKVTLYDVK---GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDAT 147 (194)
T ss_pred CCEEEEEEccCCcccEEEcCc---ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEE
Confidence 344555544 45589999996 344444433222221222366666665432 368999987631 011111
Q ss_pred ---cCCCCeeEEEEEeecccc
Q 016368 370 ---DPPRGFQVVAVHVLPRMC 387 (390)
Q Consensus 370 ---~~p~g~~~~~~~~~~~~~ 387 (390)
=.|+|--+++...-|+|.
T Consensus 148 ~~~WsPdGr~~~ta~t~~r~~ 168 (194)
T PF08662_consen 148 DVEWSPDGRYLATATTSPRLR 168 (194)
T ss_pred EEEEcCCCCEEEEEEecccee
Confidence 167776666666666664
No 307
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=22.37 E-value=3.1e+02 Score=20.92 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=31.8
Q ss_pred cEEEEECCCC-ceEEccccc--------ccccceeEEEECCEEEEEeeCCceEEEEEcCCCCCcceE
Q 016368 311 RLSKYDADHD-WWDEVIELA--------ELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWL 368 (390)
Q Consensus 311 ~v~~yd~~~~-~W~~i~~~p--------~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~ 368 (390)
.++.||+.+. .|.....-+ ..+..+-++..+|.-.||-..--.=+.|.-.+..-++|.
T Consensus 12 ~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~~~~iINc~i~~~~~y~kas~~FhQWr 78 (111)
T cd01206 12 HVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGGTKAIINSTITPNMTFTKTSQKFGQWA 78 (111)
T ss_pred EEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecCcEEEEeccccCCcceeeccccccccc
Confidence 7889999875 898877422 113334445555544444222112244555555556776
No 308
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=22.23 E-value=6.6e+02 Score=23.56 Aligned_cols=187 Identities=18% Similarity=0.145 Sum_probs=93.2
Q ss_pred CcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcc------cC
Q 016368 165 SPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKA------QL 236 (390)
Q Consensus 165 ~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~------~~ 236 (390)
..+.+|+..++.+.+.....+-...+.+.+ +++..+..-+.. ..+.+|-..++.. -|..+. .-
T Consensus 67 aay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~-------g~v~v~p~~~dG~--l~~~v~~~~h~g~~ 137 (346)
T COG2706 67 AAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS-------GSVSVYPLQADGS--LQPVVQVVKHTGSG 137 (346)
T ss_pred EEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC-------ceEEEEEcccCCc--cccceeeeecCCCC
Confidence 355667777888777655544444343333 343333332322 3666776655320 133221 11
Q ss_pred CCCCcccc-ceEEE-EECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCC--CCCceEEEeeCCeEEEEeCCCC-
Q 016368 237 KDGRFSRE-AVEAV-GFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAG--WNGPAASTMNEEELYVVNEGKG- 310 (390)
Q Consensus 237 ~~~~~~r~-~~~~~-~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~--~~~~~~~~~~~g~lyv~gg~~~- 310 (390)
|.++.... .|.+. .-+++ ++++ ..|...+..|+.+.+.-+......-.+ -..|.+.-.-+.-.|++.--++
T Consensus 138 p~~rQ~~~h~H~a~~tP~~~~l~v~---DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st 214 (346)
T COG2706 138 PHERQESPHVHSANFTPDGRYLVVP---DLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST 214 (346)
T ss_pred CCccccCCccceeeeCCCCCEEEEe---ecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE
Confidence 22221101 12222 23554 4444 335566788999877665543311122 2234444322345677776566
Q ss_pred -cEEEEECCCCceEEccc---cccc----ccceeEEEE-CCE-EEEEeeCCceEEEEEcCCCC
Q 016368 311 -RLSKYDADHDWWDEVIE---LAEL----KGAEKITAA-RGR-VCAVCENGERIMVVDVLASP 363 (390)
Q Consensus 311 -~v~~yd~~~~~W~~i~~---~p~~----r~~~~~~~~-~g~-l~i~g~~~~~v~~~d~~~~~ 363 (390)
.++.||....+..++.. ||.. .+...+... +|+ ||+--.+-++|++|-+....
T Consensus 215 V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~ 277 (346)
T COG2706 215 VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG 277 (346)
T ss_pred EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 66777887777777764 4422 222223222 444 66654445578888766543
No 309
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=21.98 E-value=7.2e+02 Score=23.97 Aligned_cols=69 Identities=10% Similarity=-0.015 Sum_probs=46.1
Q ss_pred eEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368 293 AASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 293 ~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
.++.-.+|.|..-||.+.--.+||..+..-.-+-.- .....+++... +|.....|+.++.+-+||+...
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 344347999999999888777888887654433211 22333444443 7888888777888888887653
No 310
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=21.77 E-value=7.1e+02 Score=23.79 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=40.0
Q ss_pred CCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeC-CceEEEEEcCC
Q 016368 299 EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCEN-GERIMVVDVLA 361 (390)
Q Consensus 299 ~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~-~~~v~~~d~~~ 361 (390)
..+.+.-++.+|++.+||....+-... +.......+|+..+|.-+|+.+. +..|-+|+...
T Consensus 216 ~~r~las~skDg~vrIWd~~~~~~~~~--lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 216 PCRRLASSSKDGSVRIWDTKLGTCVRT--LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred CccceecccCCCCEEEEEccCceEEEE--eccCccceEEEEEcCCceEEecCCCceEEEEEccc
Confidence 344555666778999998876544333 33445566788888887777644 45677887655
No 311
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=21.25 E-value=1.4e+02 Score=27.59 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=38.7
Q ss_pred CCeEEEEeCCCCcEEEEECCCCceEEccccccccc----ceeEEEECCEEEEEeeCCceEEEEEcC
Q 016368 299 EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKG----AEKITAARGRVCAVCENGERIMVVDVL 360 (390)
Q Consensus 299 ~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~----~~~~~~~~g~l~i~g~~~~~v~~~d~~ 360 (390)
-+++.++|+..|+++.||.+.+.=....++-.... .-.+..-++.+.|.-.+...||-||..
T Consensus 318 ~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 46778888889999999998654333333332221 123444466666665556678887743
No 312
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=20.91 E-value=2.3e+02 Score=19.14 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=17.5
Q ss_pred eCCeEEEEeCCCC--cEEEEECCCCceEEcc
Q 016368 298 NEEELYVVNEGKG--RLSKYDADHDWWDEVI 326 (390)
Q Consensus 298 ~~g~lyv~gg~~~--~v~~yd~~~~~W~~i~ 326 (390)
++..-|-+-+.++ +|++||++++.-+.+.
T Consensus 27 l~~N~Fav~~e~~~iKIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 27 LEHNHFAVVDEDGQIKIFKYDEDTNEITLKK 57 (63)
T ss_dssp -STTEEEEE-ETTEEEEEEEETTTTEEEEEE
T ss_pred ecCCEEEEEecCCeEEEEEeCCCCCeEEEEE
Confidence 4433333334344 8999999999766554
No 313
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=20.20 E-value=6.6e+02 Score=22.80 Aligned_cols=77 Identities=12% Similarity=0.133 Sum_probs=43.6
Q ss_pred ECCEEEEEc-cc----C----CCCceeEEEeCCCCCeEe---cCCCCCCCCCCc-eEEEee------CCeEEEEeCCCCc
Q 016368 251 FKGNLCMVN-LK----G----NGAKDGAIYNVELDKWKE---MPEGMHAGWNGP-AASTMN------EEELYVVNEGKGR 311 (390)
Q Consensus 251 ~~g~lyv~g-g~----g----~~~~~~~~yd~~~~~W~~---~~~~~~~~~~~~-~~~~~~------~g~lyv~gg~~~~ 311 (390)
-.|+|+|+- |. + .+.....+||+.+++=.. ++.....+.... .+++.. ++.+|+-......
T Consensus 10 ~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~g 89 (287)
T PF03022_consen 10 ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPG 89 (287)
T ss_dssp TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCE
T ss_pred CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCc
Confidence 367888883 22 1 223567899999997432 222121222222 233211 1478888877779
Q ss_pred EEEEECCCCc-eEEccc
Q 016368 312 LSKYDADHDW-WDEVIE 327 (390)
Q Consensus 312 v~~yd~~~~~-W~~i~~ 327 (390)
+.+||..+++ |+....
T Consensus 90 lIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 90 LIVYDLATGKSWRVLHN 106 (287)
T ss_dssp EEEEETTTTEEEEEETC
T ss_pred EEEEEccCCcEEEEecC
Confidence 9999999855 766654
No 314
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.02 E-value=8.1e+02 Score=23.77 Aligned_cols=61 Identities=13% Similarity=0.031 Sum_probs=33.8
Q ss_pred EEEEeCCCC--cEEEEECCCCceEEccccccccc-ceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368 302 LYVVNEGKG--RLSKYDADHDWWDEVIELAELKG-AEKITAARGRVCAVCENGERIMVVDVLAS 362 (390)
Q Consensus 302 lyv~gg~~~--~v~~yd~~~~~W~~i~~~p~~r~-~~~~~~~~g~l~i~g~~~~~v~~~d~~~~ 362 (390)
+...++.++ .+|.++....+=.....+...|. .+++......+|++||...-+.+||+.+.
T Consensus 388 ~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 388 LLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 344455566 44555544443333344433331 12233335678888877777889998876
Done!