BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016370
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 221 bits (562), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 130/358 (36%), Positives = 194/358 (54%), Gaps = 29/358 (8%)
Query: 15 IKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHR 74
+K + ++G GFIG HL ++IL T ++ +D+ D++ L++ E R+ F
Sbjct: 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHE------RMHFFE 75
Query: 75 LNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKR 133
+I + +E +K D+ + L AI TPA Y +PL +F LP+V+ + K
Sbjct: 76 GDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKH 135
Query: 134 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIE 193
L+ ST EVYG + D DP DAS +G I K RW YAC+KQL++
Sbjct: 136 LVFPSTSEVYG------MCADEQF--DP-------DASALTYGPINKPRWIYACSKQLMD 180
Query: 194 RLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLV 253
R+I+ G E GL FT+ RPFNWIGP +D I P EG RV+ F +++R + + LV
Sbjct: 181 RVIWGYGME-GLNFTLFRPFNWIGPGLD---SIYTPKEGSSRVVTQFLGHIVRGENISLV 236
Query: 254 DGGQSQRTFIYIKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKV 312
DGG +R F Y+ D I A++ +IEN A G I+N+GNP+N +VR+LA M E+ A+
Sbjct: 237 DGGSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEF 296
Query: 313 S--GEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTL 368
++A V+ +S +YG GY D R+P + Q+LGW P+ + D L
Sbjct: 297 PEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIF 354
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/362 (33%), Positives = 189/362 (52%), Gaps = 34/362 (9%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK- 78
+ ++G GFIG+HL E++L E +++ LD+ +D I L + FH +
Sbjct: 318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL--------NHPHFHFVEGDI 369
Query: 79 --HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIH 136
H +E +K D+ + L AI TP +Y PL +F + L +++YC + KR+I
Sbjct: 370 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIF 429
Query: 137 FSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLI 196
ST EVYG + ED S I G + K RW Y+ +KQL++R+I
Sbjct: 430 PSTSEVYGMCSDKYF---------------DEDHSNLIVGPVNKPRWIYSVSKQLLDRVI 474
Query: 197 YAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGG 256
+A G + GL+FT+ RPFNW+GPR+D ++ G R + NL+ P+KL+DGG
Sbjct: 475 WAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGG 531
Query: 257 QSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGE 315
+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K
Sbjct: 532 KQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLR 591
Query: 316 AALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQH 372
P V S +YG+GY D + R P + ++ L W PK + + ++ TL +
Sbjct: 592 HHF-PPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFL 650
Query: 373 RT 374
RT
Sbjct: 651 RT 652
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/367 (32%), Positives = 191/367 (52%), Gaps = 44/367 (11%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK--------HLLEPESQTGADRIQ 71
+ ++G GFIG+HL E++L E +++ LD+ +D I H +E + ++ I+
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIE 75
Query: 72 FHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN 131
+H +K D+ + L AI TP +Y PL +F + L +++YC +
Sbjct: 76 YH-------------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR 122
Query: 132 KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
KR+I ST EVYG + ED S I G + K RW Y+ +KQL
Sbjct: 123 KRIIFPSTAEVYGMCSDKYF---------------DEDHSNLIVGPVNKPRWIYSVSKQL 167
Query: 192 IERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLK 251
++R+I+A G + GL+FT+ RPFNW+GPR+D ++ G R + NL+ P+K
Sbjct: 168 LDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIK 224
Query: 252 LVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYA 310
L+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ +
Sbjct: 225 LIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFE 284
Query: 311 KVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLEST 367
K P V S +YG+GY D + R P + ++ L W PK + + ++ T
Sbjct: 285 KHPLRHHF-PPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDET 343
Query: 368 LTYQHRT 374
L + RT
Sbjct: 344 LDFFLRT 350
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/369 (32%), Positives = 192/369 (52%), Gaps = 44/369 (11%)
Query: 18 VTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK--------HLLEPESQTGADR 69
+ + ++G GFIG+HL E++L E +++ LD+ +D I H +E + ++
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEW 60
Query: 70 IQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSE 129
I++H +K D+ + L AI TP +Y PL +F + L +++YC +
Sbjct: 61 IEYH-------------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVK 107
Query: 130 NNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAK 189
KR+I ST EVYG + ED S I G + K RW Y+ +K
Sbjct: 108 YRKRIIFPSTSEVYGMCSDKYF---------------DEDHSNLIVGPVNKPRWIYSVSK 152
Query: 190 QLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQP 249
QL++R+I+A G + GL+FT+ RPFNW+GPR+D ++ G R + NL+ P
Sbjct: 153 QLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSP 209
Query: 250 LKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEV 308
+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+
Sbjct: 210 IKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLAS 269
Query: 309 YAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLE 365
+ K P V S +YG+GY D + R P + ++ L W PK + + ++
Sbjct: 270 FEKHPLRHHF-PPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETID 328
Query: 366 STLTYQHRT 374
TL + RT
Sbjct: 329 ETLDFFLRT 337
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/367 (32%), Positives = 191/367 (52%), Gaps = 44/367 (11%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK--------HLLEPESQTGADRIQ 71
+ ++G GFIG+HL E++L E +++ LD+ +D I H +E + ++ I+
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIE 75
Query: 72 FHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN 131
+H +K D+ + L AI TP +Y PL +F + L +++YC +
Sbjct: 76 YH-------------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR 122
Query: 132 KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
KR+I ST EVYG + ED S I G + K RW Y+ +KQL
Sbjct: 123 KRIIFPSTSEVYGMCSDKYF---------------DEDHSNLIVGPVNKPRWIYSVSKQL 167
Query: 192 IERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLK 251
++R+I+A G + GL+FT+ RPFNW+GPR+D ++ G R + NL+ P+K
Sbjct: 168 LDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIK 224
Query: 252 LVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYA 310
L+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ +
Sbjct: 225 LIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFE 284
Query: 311 KVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLEST 367
K P V S +YG+GY D + R P + ++ L W PK + + ++ T
Sbjct: 285 KHPLRHHF-PPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDET 343
Query: 368 LTYQHRT 374
L + RT
Sbjct: 344 LDFFLRT 350
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/362 (33%), Positives = 188/362 (51%), Gaps = 34/362 (9%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK- 78
+ ++G GFIG+HL E++L E +++ LD+ +D I L + FH +
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL--------NHPHFHFVEGDI 67
Query: 79 --HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIH 136
H +E +K D+ + L AI TP +Y PL +F + L +++YC + KR+I
Sbjct: 68 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIF 127
Query: 137 FSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLI 196
ST EVYG + ED S I G + K RW Y+ +KQL++R+I
Sbjct: 128 PSTSEVYGMCSDKYF---------------DEDHSNLIVGPVNKPRWIYSVSKQLLDRVI 172
Query: 197 YAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGG 256
+A G + GL+FT+ RPFNW+GPR+D ++ G R + NL+ P+KL+DGG
Sbjct: 173 WAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGG 229
Query: 257 QSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGE 315
+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K
Sbjct: 230 KQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLR 289
Query: 316 AALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQH 372
P V S +YG+GY D + P + ++ L W PK + + ++ TL +
Sbjct: 290 HHF-PPFAGFRVVESSSYYGKGYQDVEHEKPSIRNAHRCLDWEPKIDMQETIDETLDFFL 348
Query: 373 RT 374
RT
Sbjct: 349 RT 350
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 190/367 (51%), Gaps = 44/367 (11%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK--------HLLEPESQTGADRIQ 71
+ ++G GFIG+HL E++L E +++ LD+ +D I H +E + ++ I+
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIE 75
Query: 72 FHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN 131
+H +K D+ + L AI TP +Y PL +F + L +++YC +
Sbjct: 76 YH-------------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR 122
Query: 132 KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
KR+I ST EVYG + ED S I G + K RW Y+ +KQL
Sbjct: 123 KRIIFPSTSEVYGMCSDKYF---------------DEDHSNLIVGPVNKPRWIYSVSKQL 167
Query: 192 IERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLK 251
++R+I+A G + GL+FT+ RPFNW+GPR+D ++ G R + NL+ P+K
Sbjct: 168 LDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIK 224
Query: 252 LVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYA 310
L+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ +
Sbjct: 225 LIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFE 284
Query: 311 KVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLEST 367
K P V S +YG+GY D + P + ++ L W PK + + ++ T
Sbjct: 285 KHPLRHHF-PPFAGFRVVESSSYYGKGYQDVEHMKPSIRNAHRCLDWEPKIDMQETIDET 343
Query: 368 LTYQHRT 374
L + RT
Sbjct: 344 LDFFLRT 350
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 190/367 (51%), Gaps = 44/367 (11%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK--------HLLEPESQTGADRIQ 71
+ ++G GFIG+HL E++L E +++ LD+ +D I H +E + ++ I+
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIE 75
Query: 72 FHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN 131
+H +K D+ + L AI TP +Y PL +F + L +++YC +
Sbjct: 76 YH-------------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR 122
Query: 132 KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
KR+I ST EVYG + ED S I G + K RW Y+ +KQL
Sbjct: 123 KRIIFPSTSEVYGMCSDKYF---------------DEDHSNLIVGPVNKPRWIYSVSKQL 167
Query: 192 IERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLK 251
++R+I+A G + GL+FT+ RPFNW+GPR+D ++ G R + NL+ P+K
Sbjct: 168 LDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIK 224
Query: 252 LVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYA 310
L+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ +
Sbjct: 225 LIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFE 284
Query: 311 KVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLEST 367
K P V S +YG+GY D + P + ++ L W PK + + ++ T
Sbjct: 285 KHPLRHHF-PPFAGFRVVESSSYYGKGYQDVEHYKPSIRNAHRCLDWEPKIDMQETIDET 343
Query: 368 LTYQHRT 374
L + RT
Sbjct: 344 LDFFLRT 350
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 159/368 (43%), Gaps = 52/368 (14%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
I + G GF+GSHL +K++++ H++ +D + K +E G + + I H
Sbjct: 8 ILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRNVE--HWIGHENFEL----INH 60
Query: 80 DSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFST 139
D +E L D +LA+ +P +Y P+ T+ +N I L ++ RL+ ST
Sbjct: 61 DV-VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLAST 119
Query: 140 CEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAE 199
EVYG P+ P +D Y+ P R Y K++ E + YA
Sbjct: 120 SEVYGD------PEVHPQSED--YWGHVNPIGP---------RACYDEGKRVAETMCYAY 162
Query: 200 GAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQ 259
+ G+E + R FN GPRM G RV++ F L+ +PL + G
Sbjct: 163 MKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQT 213
Query: 260 RTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALE 319
R F Y+ D + ++ ++ + + N+GNP E T+ + A+++ + SG
Sbjct: 214 RAFQYVSDLVNGLVALMNSNVSSP---VNLGNP-EEHTILEFAQLIKNLVG--SG----- 262
Query: 320 EPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYA-EA 378
S +F E DD KR PD+ LGW P L + L + Y + +A
Sbjct: 263 ------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQA 316
Query: 379 IKQAVAKP 386
Q + KP
Sbjct: 317 NNQYIPKP 324
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 146/351 (41%), Gaps = 51/351 (14%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
I + G GF+GSHL +K+ + H++ +D + K +E G + + I H
Sbjct: 30 ILITGGAGFVGSHLTDKLXXDG-HEVTVVDNFFTGRKRNVE--HWIGHENFEL----INH 82
Query: 80 DSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFST 139
D +E L D +LA+ +P +Y P+ T+ +N I L + RL+ ST
Sbjct: 83 DV-VEPLYIEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGARLLLAST 141
Query: 140 CEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAE 199
EVYG P+ P +D Y+ P R Y K++ E YA
Sbjct: 142 SEVYGD------PEVHPQSED--YWGHVNPIGP---------RACYDEGKRVAETXCYAY 184
Query: 200 GAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQ 259
+ G+E + R FN GPR G RV++ F L+ +PL + G
Sbjct: 185 XKQEGVEVRVARIFNTFGPRXHXNDG---------RVVSNFILQALQGEPLTVYGSGSQT 235
Query: 260 RTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALE 319
R F Y+ D + ++ + + + N+GNP E T+ + A+++ + SG
Sbjct: 236 RAFQYVSDLVNGLVALXNSNVSS---PVNLGNPE-EHTILEFAQLIKNLVG--SG----- 284
Query: 320 EPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 370
S +F E DD KR PD+ LGW P L + L + Y
Sbjct: 285 ------SEIQFLSEAQDDPQKRKPDIKKAKLXLGWEPVVPLEEGLNKAIHY 329
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 119/300 (39%), Gaps = 63/300 (21%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
I + G GFIGSHL +K L+E ++++ +D + + + P ++ H ++K
Sbjct: 3 IVVTGGAGFIGSHLVDK-LVELGYEVVVVDNLSSGRREFVNPSAE-------LHVRDLKD 54
Query: 80 DSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHF-S 138
S G+ D+ + AA T P+ N + V+++ + R + F S
Sbjct: 55 YSWGAGI--KGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFAS 112
Query: 139 TCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYA 198
+ VYG P++ P + Y AK E +
Sbjct: 113 SSTVYGDADVIPTPEEEPYKPISVY----------------------GAAKAAGEVMCAT 150
Query: 199 EGAENGLEFTIVRPFNWIGPRM------DFIPGIDGPSEGVPRVLACFSNNLLRRQP--L 250
G+ VR N +GPR+ DFI LRR P L
Sbjct: 151 YARLFGVRCLAVRYANVVGPRLRHGVIYDFIMK-------------------LRRNPNVL 191
Query: 251 KLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHI--FNVGNPHNEVTVRQLAEMMTEV 308
+++ G +++++Y++DA+EA L + + NVGN + V V +A+++ EV
Sbjct: 192 EVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNV-DAVRVLDIAQIVAEV 250
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 108/262 (41%), Gaps = 46/262 (17%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
I + G GFIG HL + L+ + ++ LD + ++ ++ PE L +
Sbjct: 10 ILITGGAGFIGGHLA-RALVASGEEVTVLD--DLRVPPMIPPEGTGKFLEKPVLELEERD 66
Query: 80 DSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC-SENNKRLIHFS 138
S + + +A + P DY LD + S ++ C S +++ S
Sbjct: 67 LSDVRLVYHLASHKSVPRSFKQPLDY----LDNVDS----GRHLLALCTSVGVPKVVVGS 118
Query: 139 TCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYA 198
TCEVYG+ P+DSPL SP R YA +K +E + A
Sbjct: 119 TCEVYGQADTLPTPEDSPL-------------SP---------RSPYAASKVGLEMVAGA 156
Query: 199 -EGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQ 257
+ A E IVR FN GP + P VPR+ A NLL R L + G+
Sbjct: 157 HQRASVAPEVGIVRFFNVYGPG-------ERPDALVPRLCA----NLLTRNELPVEGDGE 205
Query: 258 SQRTFIYIKDAIEAVLLMIENP 279
+R F YI D ++ ++ + P
Sbjct: 206 QRRDFTYITDVVDKLVALANRP 227
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 118/300 (39%), Gaps = 67/300 (22%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
I + G GFIGSHL +K L+E ++++ +D+ + TG + H ++K
Sbjct: 3 IVVTGGAGFIGSHLVDK-LVELGYEVVVVDIV----------QRDTGGS-AELHVRDLKD 50
Query: 80 DSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHF-S 138
S G+ D+ + AA T P+ N + V+++ + R + F S
Sbjct: 51 YSWGAGI--KGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFAS 108
Query: 139 TCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYA 198
+ VYG P++ P + Y AK E +
Sbjct: 109 SSTVYGDADVIPTPEEEPYKPISVY----------------------GAAKAAGEVMCAT 146
Query: 199 EGAENGLEFTIVRPFNWIGPRM------DFIPGIDGPSEGVPRVLACFSNNLLRRQP--L 250
G+ VR N +GPR+ DFI LRR P L
Sbjct: 147 YARLFGVRCLAVRYANVVGPRLRHGVIYDFIMK-------------------LRRNPNVL 187
Query: 251 KLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHI--FNVGNPHNEVTVRQLAEMMTEV 308
+++ G +++++Y++DA+EA L + + NVGN + V V +A+++ EV
Sbjct: 188 EVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNV-DAVRVLDIAQIVAEV 246
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 44/300 (14%)
Query: 19 TICMIGAGGFIGSHLCEKILLETPHKILAL--DVYN-DKIKHLLE-PESQTGADRIQFHR 74
T+C+ GA GFIGS L + LLE + + A D N K+KHLL+ P+++T + +
Sbjct: 7 TVCVTGASGFIGSWLVMR-LLERGYTVRATVRDPTNVKKVKHLLDLPKAET---HLTLWK 62
Query: 75 LNIKHDSRLEGLIKMADLTINLAAICTPADYNTR-PLDTIYSNFIDA-LPVVKYC--SEN 130
++ + + IK ++A TP D+ ++ P + + I+ L ++K C ++
Sbjct: 63 ADLADEGSFDEAIKGCTGVFHVA---TPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKT 119
Query: 131 NKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQ 190
+RL+ S+ D D + K+ + W Y +K
Sbjct: 120 VRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTA-----------WMYFVSKT 168
Query: 191 LIERLIYAEGAENGLEFTIVRPFNWIGPR-MDFIPGIDGPSEGVPRVLACFSNNLLRRQP 249
L E+ + EN ++F + P +GP M +P P ++ S
Sbjct: 169 LAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMP---------PSLITALSPITGNEAH 219
Query: 250 LKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVY 309
++ GQ F+++ D A + + ENP +I + ++ + LA+M+ E Y
Sbjct: 220 YSIIRQGQ----FVHLDDLCNAHIYLFENPKAEGRYICS----SHDCIILDLAKMLREKY 271
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/372 (22%), Positives = 145/372 (38%), Gaps = 63/372 (16%)
Query: 20 ICMIGAGGFIGSHLCEKILL----ETP-HKILALD--VYNDKIKHLLEPESQTGADRIQF 72
+ + G GFIGSH ++L + P +++ LD Y +L ++ R++F
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADP---RLRF 59
Query: 73 HRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNK 132
+I+ L ++ D ++ AA + D + + + C+ +
Sbjct: 60 VHGDIRDAGLLARELRGVDAIVHFAA-ESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG 118
Query: 133 --RLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQ 190
R++H ST EVYG + SPL E SP YA +K
Sbjct: 119 VGRVVHVSTDEVYGSIDSGSWTESSPL----------EPNSP------------YAASKA 156
Query: 191 LIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPL 250
+ + A GL+ I R N GP P + +P F NLL L
Sbjct: 157 GSDLVARAYHRTYGLDVRITRCCNNYGPYQH-------PEKLIP----LFVTNLLDGGTL 205
Query: 251 KLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYA 310
L G + R +++ D + L++ RA G I+++G E+T R+L ++
Sbjct: 206 PLYGDGANVREWVHTDDHCRGIALVLAG-GRA-GEIYHIGGGL-ELTNRELTGIL----- 257
Query: 311 KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 370
L+ D SS + + D I ++LG+ P+ S D L T+ +
Sbjct: 258 -------LDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLARTVRW 310
Query: 371 --QHRTYAEAIK 380
++R + E +K
Sbjct: 311 YRENRGWWEPLK 322
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/356 (23%), Positives = 140/356 (39%), Gaps = 58/356 (16%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALD--VYNDKIKHLLEPESQTGADRIQFHRLNI 77
I + G GFIGS + I+ T ++ +D Y ++ L + ++R F +I
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISE---SNRYNFEHADI 59
Query: 78 KHDSRLEGLIKM--ADLTINLAAICTPADYNTRPLDTIYSNFIDALPVV----KYCS--- 128
+ + + + D ++LAA T P I +N + ++ KY S
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALG 119
Query: 129 ---ENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSY 185
+NN R H ST EVYG LP + + E + Y
Sbjct: 120 EDKKNNFRFHHISTDEVYGD-----LPHPDEVENSVTLPLFTETTAYAPSSP-------Y 167
Query: 186 ACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL 245
+ +K + L+ A GL + N GP P + +P V+ N L
Sbjct: 168 SASKASSDHLVRAWRRTYGLPTIVTNCSNNYGP-------YHFPEKLIPLVIL----NAL 216
Query: 246 RRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEV----TVRQL 301
+PL + G R ++Y++D A L M+ +A G +N+G HNE V +
Sbjct: 217 EGKPLPIYGKGDQIRDWLYVEDHARA-LHMVVTEGKA-GETYNIGG-HNEKKNLDVVFTI 273
Query: 302 AEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIP-DMTIINQQLGWNP 356
+++ E+ K + + E V+ + + D+R D I+++LGW P
Sbjct: 274 CDLLDEIVPKAT---SYREQITYVADRPGH-------DRRYAIDAGKISRELGWKP 319
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 115/276 (41%), Gaps = 48/276 (17%)
Query: 106 NTRPLDTIYSNFIDALPVVKYCSEN--NKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAY 163
NT P D IY N + ++ +N NK L S+C +Y K P+ +
Sbjct: 73 NTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSC-IYPKL------AKQPMAE---- 121
Query: 164 YVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFI 223
S + G++E YA AK +L + + G ++ V P N GP +F
Sbjct: 122 -------SELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFH 174
Query: 224 PGIDGPSEGVPRVLACFSNNLLRRQPLKLVDG-GQSQRTFIYIKDAIEAVL--------L 274
P S +P +L F ++ P +V G G R F+++ D A + +
Sbjct: 175 P---SNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEV 231
Query: 275 MIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEG 334
+EN HI NVG + T+R+LA+ + AKV G D S
Sbjct: 232 WLENTQPMLSHI-NVGTG-VDCTIRELAQTI----AKVVGYKG--RVVFDASKP------ 277
Query: 335 YDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 370
D + +++ D+T ++ QLGW + SL L ST +
Sbjct: 278 -DGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQW 311
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 120/289 (41%), Gaps = 47/289 (16%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
+ + G G+IGSH C + LL+ H ++ LD + + +L + G F +I++
Sbjct: 3 VLVTGGSGYIGSHTCVQ-LLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 80 DSRLEGLI--KMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC-SENNKRLIH 136
++ + ++ D I+ A + + +PL+ +N L ++ + N K I
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 137 FSTCEVYGKT-----IGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
ST VYG + SF P +P Q P Y +K +
Sbjct: 122 SSTATVYGDNPKIPYVESF-PTGTP--QSP-----------------------YGKSKLM 155
Query: 192 IERLIY-AEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL--RRQ 248
+E+++ + A+ ++R FN +G G D +G+P L + + RR
Sbjct: 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGED--PQGIPNNLMPYIAQVAVGRRD 213
Query: 249 PLKL------VDGGQSQRTFIYIKDAIEAVLLMIENPARANG-HIFNVG 290
L + + G R +I++ D + ++ +E A G HI+N+G
Sbjct: 214 SLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLG 262
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/372 (22%), Positives = 143/372 (38%), Gaps = 63/372 (16%)
Query: 20 ICMIGAGGFIGSHLCEKILLET-----PHKILALD--VYNDKIKHLLEPESQTGADRIQF 72
+ + G GFIGSH ++L +++ LD Y +L ++ R++F
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADP---RLRF 59
Query: 73 HRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNK 132
+I+ L ++ D ++ AA + D + + + C+ +
Sbjct: 60 VHGDIRDAGLLARELRGVDAIVHFAA-ESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG 118
Query: 133 --RLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQ 190
R++H ST +VYG + SPL E SP YA +K
Sbjct: 119 VGRVVHVSTNQVYGSIDSGSWTESSPL----------EPNSP------------YAASKA 156
Query: 191 LIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPL 250
+ + A GL+ I R N GP P + +P F NLL L
Sbjct: 157 GSDLVARAYHRTYGLDVRITRCCNNYGPYQH-------PEKLIP----LFVTNLLDGGTL 205
Query: 251 KLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYA 310
L G + R +++ D + L++ RA G I+++G E+T R+L ++
Sbjct: 206 PLYGDGANVREWVHTDDHCRGIALVLAG-GRA-GEIYHIGGGL-ELTNRELTGIL----- 257
Query: 311 KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 370
L+ D SS + + D I ++LG+ P+ S D L T+ +
Sbjct: 258 -------LDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLARTVRW 310
Query: 371 --QHRTYAEAIK 380
++R + E +K
Sbjct: 311 YRENRGWWEPLK 322
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 114/276 (41%), Gaps = 48/276 (17%)
Query: 106 NTRPLDTIYSNFIDALPVVKYCSEN--NKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAY 163
NT P D IY N + ++ +N NK L S+C +Y K P+ +
Sbjct: 73 NTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSC-IYPKL------AKQPMAE---- 121
Query: 164 YVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFI 223
S + G++E YA AK +L + + G ++ V P N GP +F
Sbjct: 122 -------SELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFH 174
Query: 224 PGIDGPSEGVPRVLACFSNNLLRRQPLKLVDG-GQSQRTFIYIKDAIEAVL--------L 274
P S +P +L F + P +V G G R F+++ D A + +
Sbjct: 175 P---SNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEV 231
Query: 275 MIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEG 334
+EN HI NVG + T+R+LA+ + AKV G D S
Sbjct: 232 WLENTQPMLSHI-NVGTG-VDCTIRELAQTI----AKVVGYKG--RVVFDASKP------ 277
Query: 335 YDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 370
D + +++ D+T ++ QLGW + SL L ST +
Sbjct: 278 -DGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQW 311
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 120/289 (41%), Gaps = 47/289 (16%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
+ + G G+IGSH C + LL+ H ++ LD + + +L + G F +I++
Sbjct: 3 VLVTGGSGYIGSHTCVQ-LLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 80 DSRLEGLI--KMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC-SENNKRLIH 136
++ + ++ D I+ A + + +PL+ +N L ++ + N K I
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 137 FSTCEVYGKT-----IGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
S+ VYG + SF P +P Q P Y +K +
Sbjct: 122 SSSATVYGDNPKIPYVESF-PTGTP--QSP-----------------------YGKSKLM 155
Query: 192 IERLIY-AEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL--RRQ 248
+E+++ + A+ ++R FN +G G D +G+P L + + RR
Sbjct: 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGED--PQGIPNNLMPYIAQVAVGRRD 213
Query: 249 PLKL------VDGGQSQRTFIYIKDAIEAVLLMIENPARANG-HIFNVG 290
L + + G R +I++ D + ++ +E A G HI+N+G
Sbjct: 214 SLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLG 262
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 120/289 (41%), Gaps = 47/289 (16%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
+ + G G+IGSH C + LL+ H ++ LD + + +L + G F +I++
Sbjct: 3 VLVTGGSGYIGSHTCVQ-LLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 80 DSRLEGLI--KMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC-SENNKRLIH 136
++ + ++ D I+ A + + +PL+ +N L ++ + N K I
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 137 FSTCEVYGKT-----IGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
S+ VYG + SF P +P Q P Y +K +
Sbjct: 122 SSSATVYGDNPKIPYVESF-PTGTP--QSP-----------------------YGKSKLM 155
Query: 192 IERLIY-AEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL--RRQ 248
+E+++ + A+ ++R FN +G G D +G+P L + + RR
Sbjct: 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGED--PQGIPNNLMPYIAQVAVGRRD 213
Query: 249 PLKL------VDGGQSQRTFIYIKDAIEAVLLMIENPARANG-HIFNVG 290
L + + G R +I++ D + ++ +E A G HI+N+G
Sbjct: 214 SLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLG 262
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 79/359 (22%), Positives = 141/359 (39%), Gaps = 49/359 (13%)
Query: 14 PIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFH 73
P + + I + GAGGFI SH+ ++ E H ++A D K +H+ E D +FH
Sbjct: 26 PSENLKISITGAGGFIASHIARRLKHE-GHYVIASDW--KKNEHMTE---DMFCD--EFH 77
Query: 74 RLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTI-YSNFIDALPVVKYCSENN- 131
++++ + + D NLAA + I Y+N + + +++ N
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGI 137
Query: 132 KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
KR + S+ +Y + + L++ A+ +DA Y K
Sbjct: 138 KRFFYASSACIYPE-FKQLETTNVSLKESDAWPAEPQDA--------------YGLEKLA 182
Query: 192 IERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLK 251
E L + G+E I R N GP G E P + R +
Sbjct: 183 TEELCKHYNKDFGIECRIGRFHNIYGP----FGTWKGGREAAPAAFCRKAQTSTDR--FE 236
Query: 252 LVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK 311
+ G R+F +I + +E VL + ++ R N+G+ V++ ++AEM+
Sbjct: 237 MWGDGLQTRSFTFIDECVEGVLRLTKSDFR---EPVNIGSDEM-VSMNEMAEMVL----- 287
Query: 312 VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 370
+ EE + + + G + R D +I ++LGW P L + L T +
Sbjct: 288 -----SFEEKKLPIH----HIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 120/289 (41%), Gaps = 47/289 (16%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
+ + G G+IGSH C + LL+ H ++ LD + + +L + G F +I++
Sbjct: 3 VLVTGGSGYIGSHTCVQ-LLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 80 DSRLEGLI--KMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC-SENNKRLIH 136
++ + ++ D I+ A + + +PL+ +N L ++ + N K I
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 137 FSTCEVYGKT-----IGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
S+ VYG + SF P +P Q P Y +K +
Sbjct: 122 SSSATVYGDQPKIPYVESF-PTGTP--QSP-----------------------YGKSKLM 155
Query: 192 IERLIY-AEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL--RRQ 248
+E+++ + A+ ++R FN +G G D +G+P L + + RR
Sbjct: 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGED--PQGIPNNLMPYIAQVAVGRRD 213
Query: 249 PLKL------VDGGQSQRTFIYIKDAIEAVLLMIENPARANG-HIFNVG 290
L + + G R +I++ D + ++ +E A G HI+N+G
Sbjct: 214 SLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLG 262
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 113/276 (40%), Gaps = 48/276 (17%)
Query: 106 NTRPLDTIYSNFIDALPVVKYCSEN--NKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAY 163
NT P D IY N + ++ +N NK L S+C +Y K P+ +
Sbjct: 73 NTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSC-IYPKL------AKQPMAE---- 121
Query: 164 YVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFI 223
S + G++E YA AK +L + + G ++ V P N GP +F
Sbjct: 122 -------SELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFH 174
Query: 224 PGIDGPSEGVPRVLACFSNNLLRRQPLKLVDG-GQSQRTFIYIKDAIEAVL--------L 274
P S +P +L F + P +V G G R F+++ D A + +
Sbjct: 175 P---SNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEV 231
Query: 275 MIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEG 334
+EN HI NVG + T+R LA+ + AKV G D S
Sbjct: 232 WLENTQPMLSHI-NVGTG-VDCTIRDLAQTI----AKVVGYKG--RVVFDASKP------ 277
Query: 335 YDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 370
D + +++ D+T ++ QLGW + SL L ST +
Sbjct: 278 -DGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQW 311
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 114/276 (41%), Gaps = 48/276 (17%)
Query: 106 NTRPLDTIYSNFIDALPVVKYCSEN--NKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAY 163
NT P D IY N + ++ +N NK L ++C +Y K P+ +
Sbjct: 73 NTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGASC-IYPKL------AKQPMAE---- 121
Query: 164 YVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFI 223
S + G++E YA AK +L + + G ++ V P N GP +F
Sbjct: 122 -------SELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFH 174
Query: 224 PGIDGPSEGVPRVLACFSNNLLRRQPLKLVDG-GQSQRTFIYIKDAIEAVL--------L 274
P S +P +L F + P +V G G R F+++ D A + +
Sbjct: 175 P---SNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEV 231
Query: 275 MIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEG 334
+EN HI NVG + T+R+LA+ + AKV G D S
Sbjct: 232 WLENTQPMLSHI-NVGTG-VDCTIRELAQTI----AKVVGYKG--RVVFDASKP------ 277
Query: 335 YDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 370
D + +++ D+T ++ QLGW + SL L ST +
Sbjct: 278 -DGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQW 311
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 114/276 (41%), Gaps = 48/276 (17%)
Query: 106 NTRPLDTIYSNFIDALPVVKYCSEN--NKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAY 163
NT P D IY N + ++ +N NK L S+C +Y K P+ +
Sbjct: 73 NTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSC-IYPKL------AKQPMAE---- 121
Query: 164 YVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFI 223
S + G++E YA A+ +L + + G ++ V P N GP +F
Sbjct: 122 -------SELLQGTLEPTNEPYAIARIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFH 174
Query: 224 PGIDGPSEGVPRVLACFSNNLLRRQPLKLVDG-GQSQRTFIYIKDAIEAVL--------L 274
P S +P +L F + P +V G G R F+++ D A + +
Sbjct: 175 P---SNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEV 231
Query: 275 MIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEG 334
+EN HI NVG + T+R+LA+ + AKV G D S
Sbjct: 232 WLENTQPMLSHI-NVGTG-VDCTIRELAQTI----AKVVGYKG--RVVFDASKP------ 277
Query: 335 YDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 370
D + +++ D+T ++ QLGW + SL L ST +
Sbjct: 278 -DGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQW 311
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 47/289 (16%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
+ + G G+IGSH C + LL+ H ++ LD + + +L + G F +I++
Sbjct: 3 VLVTGGSGYIGSHTCVQ-LLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 80 DSRLEGLI--KMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC-SENNKRLIH 136
++ + ++ D I+ A + + +PL+ +N L ++ + N K I
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 137 FSTCEVYGKT-----IGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
S VYG + SF P +P Q P Y +K +
Sbjct: 122 SSVATVYGDNPKIPYVESF-PTGTP--QSP-----------------------YGKSKLM 155
Query: 192 IERLIY-AEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL--RRQ 248
+E+++ + A+ ++R FN +G G D +G+P L + + RR
Sbjct: 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGED--PQGIPNNLMPYIAQVAVGRRD 213
Query: 249 PLKL------VDGGQSQRTFIYIKDAIEAVLLMIENPARANG-HIFNVG 290
L + + G R +I++ D + ++ +E A G HI+N+G
Sbjct: 214 SLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLG 262
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 79/359 (22%), Positives = 141/359 (39%), Gaps = 49/359 (13%)
Query: 14 PIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFH 73
P + + I + GAGGFI SH+ ++ E H ++A D K +H+ E D +FH
Sbjct: 26 PSENLKISITGAGGFIASHIARRLKHE-GHYVIASDW--KKNEHMTE---DMFCD--EFH 77
Query: 74 RLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTI-YSNFIDALPVVKYCSENN- 131
++++ + + D NLAA + I Y+N + + +++ N
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGI 137
Query: 132 KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
KR + S+ +Y + + L++ A+ +DA Y K
Sbjct: 138 KRFFYASSACIYPE-FKQLETTNVSLKESDAWPAEPQDA--------------YGLEKLA 182
Query: 192 IERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLK 251
E L + G+E I R N GP G E P + R +
Sbjct: 183 TEELCKHYNKDFGIECRIGRFHNIYGP----FGTWKGGREKAPAAFCRKAQTSTDR--FE 236
Query: 252 LVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK 311
+ G R+F +I + +E VL + ++ R N+G+ V++ ++AEM+
Sbjct: 237 MWGDGLQTRSFTFIDECVEGVLRLTKSDFR---EPVNIGSDEM-VSMNEMAEMVL----- 287
Query: 312 VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 370
+ EE + + + G + R D +I ++LGW P L + L T +
Sbjct: 288 -----SFEEKKLPIH----HIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 47/289 (16%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
+ + G G+IGSH C + LL+ H ++ LD + + +L + G F +I++
Sbjct: 3 VLVTGGSGYIGSHTCVQ-LLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 80 DSRLEGLI--KMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC-SENNKRLIH 136
++ + ++ D I+ A + + +PL+ +N L ++ + N K I
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 137 FSTCEVYGKT-----IGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
S VYG + SF P +P Q P Y +K +
Sbjct: 122 SSAATVYGDNPKIPYVESF-PTGTP--QSP-----------------------YGKSKLM 155
Query: 192 IERLIY-AEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL--RRQ 248
+E+++ + A+ ++R FN +G G D +G+P L + + RR
Sbjct: 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGED--PQGIPNNLMPYIAQVAVGRRD 213
Query: 249 PLKL------VDGGQSQRTFIYIKDAIEAVLLMIENPARANG-HIFNVG 290
L + + G R +I++ D + ++ +E A G HI+N+G
Sbjct: 214 SLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLG 262
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 47/289 (16%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
+ + G G+IGSH C + LL+ H ++ LD + + +L + G F +I++
Sbjct: 3 VLVTGGSGYIGSHTCVQ-LLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 80 DSRLEGLI--KMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC-SENNKRLIH 136
++ + ++ D I+ A + + +PL+ +N L ++ + N K I
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 137 FSTCEVYGKT-----IGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
S VYG + SF P +P Q P Y +K +
Sbjct: 122 SSAATVYGDQPKIPYVESF-PTGTP--QSP-----------------------YGKSKLM 155
Query: 192 IERLIY-AEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL--RRQ 248
+E+++ + A+ ++R FN +G G D +G+P L + + RR
Sbjct: 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGED--PQGIPNNLMPYIAQVAVGRRD 213
Query: 249 PLKL------VDGGQSQRTFIYIKDAIEAVLLMIENPARANG-HIFNVG 290
L + + G R +I++ D + ++ +E A G HI+N+G
Sbjct: 214 SLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLG 262
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/359 (21%), Positives = 141/359 (39%), Gaps = 49/359 (13%)
Query: 14 PIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFH 73
P + + I + GAGGFI SH+ ++ E H ++A D K +H+ E D +FH
Sbjct: 26 PSENLKISITGAGGFIASHIARRLKHE-GHYVIASDW--KKNEHMTE---DMFCD--EFH 77
Query: 74 RLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTI-YSNFIDALPVVKYCSENN- 131
++++ + + D NLAA + I Y+N + + +++ N
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGI 137
Query: 132 KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
KR + S+ +Y + + L++ A+ +DA Y +
Sbjct: 138 KRFFYASSACIYPE-FKQLETTNVSLKESDAWPAEPQDA--------------YGLERLA 182
Query: 192 IERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLK 251
E L + G+E I R N GP G E P + R +
Sbjct: 183 TEELCKHYNKDFGIECRIGRFHNIYGP----FGTWKGGREKAPAAFCRKAQTSTDR--FE 236
Query: 252 LVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK 311
+ G R+F +I + +E VL + ++ R N+G+ V++ ++AEM+
Sbjct: 237 MWGDGLQTRSFTFIDECVEGVLRLTKSDFR---EPVNIGSDEM-VSMNEMAEMVL----- 287
Query: 312 VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 370
+ EE + + + G + R D +I ++LGW P L + L T +
Sbjct: 288 -----SFEEKKLPIH----HIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 47/289 (16%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
+ + G G+IGSH C + LL+ H ++ LD + + +L + G F +I++
Sbjct: 3 VLVTGGSGYIGSHTCVQ-LLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 80 DSRLEGLI--KMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC-SENNKRLIH 136
++ + ++ D I+ A + + +PL+ +N L ++ + N K I
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 137 FSTCEVYGKT-----IGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
S+ VYG + SF P +P Q P + +K +
Sbjct: 122 SSSATVYGDQPKIPYVESF-PTGTP--QSP-----------------------FGKSKLM 155
Query: 192 IERLIY-AEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL--RRQ 248
+E+++ + A+ ++R FN +G G D +G+P L + + RR
Sbjct: 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGED--PQGIPNNLMPYIAQVAVGRRD 213
Query: 249 PLKL------VDGGQSQRTFIYIKDAIEAVLLMIENPARANG-HIFNVG 290
L + + G R +I++ D + ++ +E A G HI+N+G
Sbjct: 214 SLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLG 262
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/359 (21%), Positives = 141/359 (39%), Gaps = 49/359 (13%)
Query: 14 PIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFH 73
P + + I + GAGGFI SH+ ++ E H ++A D K +H+ E D +FH
Sbjct: 26 PSENLKISITGAGGFIASHIARRLKHE-GHYVIASDW--KKNEHMTE---DMFCD--EFH 77
Query: 74 RLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTI-YSNFIDALPVVKYCSENN- 131
++++ + + D NLAA + I Y+N + + +++ N
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGI 137
Query: 132 KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
KR + S+ +Y + + L++ A+ +DA + K
Sbjct: 138 KRFFYASSACIYPE-FKQLETTNVSLKESDAWPAEPQDA--------------FGLEKLA 182
Query: 192 IERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLK 251
E L + G+E I R N GP G E P + R +
Sbjct: 183 TEELCKHYNKDFGIECRIGRFHNIYGP----FGTWKGGREKAPAAFCRKAQTSTDR--FE 236
Query: 252 LVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK 311
+ G R+F +I + +E VL + ++ R N+G+ V++ ++AEM+
Sbjct: 237 MWGDGLQTRSFTFIDECVEGVLRLTKSDFR---EPVNIGSDEM-VSMNEMAEMVL----- 287
Query: 312 VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 370
+ EE + + + G + R D +I ++LGW P L + L T +
Sbjct: 288 -----SFEEKKLPIH----HIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 119/289 (41%), Gaps = 47/289 (16%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
+ + G G+IGSH C + LL+ H ++ LD + + +L + G F +I++
Sbjct: 3 VLVTGGSGYIGSHTCVQ-LLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 80 DSRLEGLI--KMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC-SENNKRLIH 136
++ + ++ D I+ A + + +PL+ +N L ++ + N K I
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 137 FSTCEVYGKT-----IGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
S VYG + SF P +P Q P + +K +
Sbjct: 122 SSAATVYGDNPKIPYVESF-PTGTP--QSP-----------------------FGKSKLM 155
Query: 192 IERLIY-AEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL--RRQ 248
+E+++ + A+ ++R FN +G G D +G+P L + + RR
Sbjct: 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGED--PQGIPNNLMPYIAQVAVGRRD 213
Query: 249 PLKL------VDGGQSQRTFIYIKDAIEAVLLMIENPARANG-HIFNVG 290
L + + G R +I++ D + ++ +E A G HI+N+G
Sbjct: 214 SLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLG 262
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 119/289 (41%), Gaps = 47/289 (16%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
+ + G G+IGSH C + LL+ H ++ LD + + +L + G F +I++
Sbjct: 3 VLVTGGSGYIGSHTCVQ-LLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 80 DSRLEGLI--KMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC-SENNKRLIH 136
++ + ++ D I+ A + + +PL+ +N L ++ + N K I
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 137 FSTCEVYGKT-----IGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
S VYG + SF P +P Q P + +K +
Sbjct: 122 SSAATVYGDQPKIPYVESF-PTGTP--QSP-----------------------FGKSKLM 155
Query: 192 IERLIY-AEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL--RRQ 248
+E+++ + A+ ++R FN +G G D +G+P L + + RR
Sbjct: 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGED--PQGIPNNLMPYIAQVAVGRRD 213
Query: 249 PLKL------VDGGQSQRTFIYIKDAIEAVLLMIENPARANG-HIFNVG 290
L + + G R +I++ D + ++ +E A G HI+N+G
Sbjct: 214 SLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLG 262
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 122/300 (40%), Gaps = 69/300 (23%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
I + G GFIGSH+ +K L ++I+ +D +L + + + + ++
Sbjct: 4 IVVTGGAGFIGSHVVDK--LSESNEIVVID-------NLSSGNEEFVNEAARLVKADLAA 54
Query: 80 DSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNK----RLI 135
D ++ +K A+ ++AA P D IY N + L + K R++
Sbjct: 55 DD-IKDYLKGAEEVWHIAANPDVRIGAENP-DEIYRN--NVLATYRLLEAMRKAGVSRIV 110
Query: 136 HFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERL 195
ST VYG+ P+D P P Y +K E L
Sbjct: 111 FTSTSTVYGEAKVIPTPEDYP-------------THPISL---------YGASKLACEAL 148
Query: 196 IYAEGAENGLEFTIVRPFNWIGPR------MDFIPGIDGPSEGVPRVLACFSNNLLRRQP 249
I + ++ I R N IG R DFI L+R P
Sbjct: 149 IESYCHTFDMQAWIYRFANVIGRRSTHGVIYDFIMK-------------------LKRNP 189
Query: 250 --LKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTE 307
L+++ G+ +++IYI D ++A+L + R N IFN+G+ +++ V+++AE++ E
Sbjct: 190 EELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVN--IFNIGS-EDQIKVKRIAEIVCE 246
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 48/276 (17%)
Query: 106 NTRPLDTIYSNFIDALPVVKYCSEN--NKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAY 163
NT P D IY N + ++ +N NK L S+C +Y K P+ +
Sbjct: 73 NTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSC-IYPKL------AKQPMAE---- 121
Query: 164 YVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFI 223
S + G++E A AK +L + + G ++ V P N GP +F
Sbjct: 122 -------SELLQGTLEPTNEPEAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFH 174
Query: 224 PGIDGPSEGVPRVLACFSNNLLRRQPLKLVDG-GQSQRTFIYIKDAIEAVL--------L 274
P S +P +L F + P +V G G R F+++ D A + +
Sbjct: 175 P---SNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEV 231
Query: 275 MIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEG 334
+EN HI NVG + T+R+LA+ + AKV G D S
Sbjct: 232 WLENTQPMLSHI-NVGTG-VDCTIRELAQTI----AKVVGYKG--RVVFDASKP------ 277
Query: 335 YDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 370
D + +++ D+T ++ QLGW + SL L ST +
Sbjct: 278 -DGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQW 311
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 148/355 (41%), Gaps = 56/355 (15%)
Query: 14 PIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYN-------DKIKHLLEPESQTG 66
P +P + G GFIGS+L E LL+ K++ LD + D+++ L+ S+
Sbjct: 24 PAQPKVWLITGVAGFIGSNLLE-TLLKLDQKVVGLDNFATGHQRNLDEVRSLV---SEKQ 79
Query: 67 ADRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKY 126
+F + +I++ D ++ AA+ + P+ + +N ID +
Sbjct: 80 WSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATN-IDGFLNMLI 138
Query: 127 CSENNK--RLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWS 184
+ + K + ++ YG G LPK ED +I K
Sbjct: 139 AARDAKVQSFTYAASSSTYGDHPG--LPK-------------VED-------TIGKPLSP 176
Query: 185 YACAKQLIERLIYAEGAENGLEFTIV--RPFNWIGPRMDFIPGIDGPSEGVPRVLACFSN 242
YA K + E +YA+ F+ + R FN G R D P+ V+ +++
Sbjct: 177 YAVTKYVNE--LYADVFSRCYGFSTIGLRYFNVFGRRQD-------PNGAYAAVIPKWTS 227
Query: 243 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLA 302
++++ + + G++ R F YI++ ++A LL A ++N+ ++ QL
Sbjct: 228 SMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQVYNIA-VGGRTSLNQLF 286
Query: 303 EMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPK 357
+ + A+ +G + EP ++F EG D + D++ + LG+ PK
Sbjct: 287 FALRDGLAE-NGVSYHREPVY----RDFR-EG--DVRHSLADISKAAKLLGYAPK 333
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 114/280 (40%), Gaps = 49/280 (17%)
Query: 18 VTICMIGAGGFIGSHLCEKILLETPHKILALDVYN-DKIKHLLEPESQTGAD---RIQFH 73
+ + + G GFIGS+ IL + P +V N DK+ + P + + R F
Sbjct: 4 MKLLVTGGMGFIGSNFIRYILEKHPD----WEVINIDKLGYGSNPANLKDLEDDPRYTFV 59
Query: 74 RLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNK- 132
+ ++ ++ L++ D ++LAA + P ++SN I +++ N
Sbjct: 60 KGDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPE 119
Query: 133 -RLIHFSTCEVYGKTI-GSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQ 190
R +H ST EVYG + GSF D + P Y+ K
Sbjct: 120 VRFVHVSTDEVYGDILKGSFTENDRLMPSSP-----------------------YSATKA 156
Query: 191 LIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPL 250
+ L+ L +I R N GP P + +P+ + S L +
Sbjct: 157 ASDMLVLGWTRTYNLNASITRCTNNYGP-------YQFPEKLIPKTIIRASLGL----KI 205
Query: 251 KLVDGGQSQRTFIYIKDAIEAV-LLMIENPARANGHIFNV 289
+ G++ R ++Y++D + A+ L++++ +R I+N+
Sbjct: 206 PIYGTGKNVRDWLYVEDHVRAIELVLLKGESR---EIYNI 242
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/391 (20%), Positives = 149/391 (38%), Gaps = 74/391 (18%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTG-----ADRIQFHR 74
I + G GFIGS+ + P DV+ + L ++ DR++
Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHP------DVHVTVLDKLTYAGNKANLEAILGDRVELVV 60
Query: 75 LNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL 134
+I ++ L AD ++ AA + P I++NFI +++ + + R
Sbjct: 61 GDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRF 120
Query: 135 IHFSTCEVYGKTIGSFLPKDSPLRQD-PAY-------YVLKEDASPCIFGSIEKQRWSYA 186
H ST EVYG D PLR+D P + + + + +P Y+
Sbjct: 121 HHVSTDEVYG---------DLPLREDLPGHGEGPGEKFTAETNYNPSS---------PYS 162
Query: 187 CAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLR 246
K + ++ A G++ TI N GP + +PR + N+L
Sbjct: 163 STKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHI-------EKFIPRQIT----NILA 211
Query: 247 RQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNV-GNPHNEVTVRQLAEMM 305
KL G++ R +I+ D V ++ ++ G +N+ + + E M
Sbjct: 212 GIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKM 271
Query: 306 ---TEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPK-TSLW 361
+ Y V+ A G+D + D + + +LGW P+ T
Sbjct: 272 GQPKDAYDHVTDRA-----------------GHD--LRYAIDASKLRDELGWTPQFTDFS 312
Query: 362 DLLESTLTY--QHRTYAEAIKQAVAKPVASS 390
+ LE T+ + ++ + +A K+AV A +
Sbjct: 313 EGLEETIQWYTDNQDWWKAEKEAVEANYAKT 343
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/388 (19%), Positives = 147/388 (37%), Gaps = 43/388 (11%)
Query: 3 GASVRLDLDGRPIKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPE 62
G+ + + ++ + + ++G GF+GS+L +++L +++ +D +LL E
Sbjct: 18 GSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVD-------NLLSAE 70
Query: 63 SQTGADR--IQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDA 120
D ++F +I D+ L L D +LA PL +N +
Sbjct: 71 KINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTT 130
Query: 121 LPV---VKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGS 177
L + +K+ K + + C + KT D+ ++ L + SP
Sbjct: 131 LKLYERLKHFKRLKKVVYSAAGCSIAEKTF-----DDAKATEETDIVSLHNNDSPYSMSK 185
Query: 178 IEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVL 237
I + +S KQ + A I+ W G P+ V
Sbjct: 186 IFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGT----------PATVWRNVT 235
Query: 238 ACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVT 297
F L+ PL L +GG + R FI+++D ++ + G ++N+ + E +
Sbjct: 236 PTFIYKALKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTP--GGVYNIASG-KETS 292
Query: 298 VRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPK 357
+ LA + E+ + L + +D+S KR ++LG++
Sbjct: 293 IADLATKINEITGNNTELDRLPK------------RPWDNSGKRFGSPEKARRELGFSAD 340
Query: 358 TSLWDLLESTLTYQHRTYAEAIKQAVAK 385
S+ D L T+ + A I+Q + K
Sbjct: 341 VSIDDGLRKTIEWTKANLA-VIEQIMRK 367
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 122/310 (39%), Gaps = 55/310 (17%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALD--VYNDKIKHLLEPESQTGADRIQFHRLNI 77
I + G GFIGS L I+ ET ++ +D Y + L P +Q+ +R F +++I
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMS-LAPVAQS--ERFAFEKVDI 60
Query: 78 KHDSRLEGLI--KMADLTINLAA-------ICTPADYNTRPLDTIYSNFIDALPVVKYCS 128
+ L + D ++LAA I PA + + Y+ A +
Sbjct: 61 CDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT 120
Query: 129 ENNK---RLIHFSTCEVYG--KTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRW 183
E+ K R H ST EVYG + F + +P +SP
Sbjct: 121 EDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPY----------APSSP----------- 159
Query: 184 SYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNN 243
Y+ +K + L+ A GL I N GP P + +P ++ N
Sbjct: 160 -YSASKASSDHLVRAWLRTYGLPTLITNCSNNYGP-------YHFPEKLIPLMIL----N 207
Query: 244 LLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAE 303
L + L + GQ R ++Y++D A L + + G +N+G HNE + E
Sbjct: 208 ALAGKSLPVYGNGQQIRDWLYVEDHARA-LYCVATTGKV-GETYNIGG-HNERKNLDVVE 264
Query: 304 MMTEVYAKVS 313
+ E+ +++
Sbjct: 265 TICELLEELA 274
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 122/297 (41%), Gaps = 61/297 (20%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVY-NDKIKHLLEPESQTGADRIQFHRLNIK 78
+ + G G IGSH+ E +LLE K++ +D + + +HL + + T F +I
Sbjct: 24 VFITGICGQIGSHIAE-LLLERGDKVVGIDNFATGRREHLKDHPNLT------FVEGSIA 76
Query: 79 HDSRLEGLIK--MADLTINLAAICTPAD--YNTRPLDTIYSNFIDALPVVKYCSENN-KR 133
+ + LI D ++ AA D YN DT+ +N + VV+ +NN R
Sbjct: 77 DHALVNQLIGDLQPDAVVHTAASYKDPDDWYN----DTL-TNCVGGSNVVQAAKKNNVGR 131
Query: 134 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIE 193
++F T YG P P+R D +P SYA +K E
Sbjct: 132 FVYFQTALCYGVK-----PIQQPVRLD-------HPRNPA--------NSSYAISKSANE 171
Query: 194 RLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLV 253
+ +GL+F R N +GPR + GP L F L + +
Sbjct: 172 DYL----EYSGLDFVTFRLANVVGPR-----NVSGP-------LPIFFQRLSEGKKCFVT 215
Query: 254 DGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYA 310
+++R F+++KD A + ++ H F+ G +V +++L + + E A
Sbjct: 216 ---KARRDFVFVKDLARATVRAVDGVGHGAYH-FSSG---TDVAIKELYDAVVEAMA 265
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 111/286 (38%), Gaps = 57/286 (19%)
Query: 19 TICMIGAGGFIGSHLCEKILLETPH-KILALDVYNDKIKHLLEPESQTG--ADRIQFHRL 75
TI + G GF+GS+L P K++ LD + S G + I F
Sbjct: 12 TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE 71
Query: 76 NIKHD-------SRLEGLIKMADLTINLAAICTPADYNTR-PLDTIYSNFIDALPVVKYC 127
I D RLE L D + AA+ N + T Y F++ L + +
Sbjct: 72 VIAADINNPLDLRRLEKL--HFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIAR-- 127
Query: 128 SENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYAC 187
++I+ S+ VYG T +P + G E Y
Sbjct: 128 -SKKAKVIYASSAGVYGNT-----------------------KAPNVVGKNESPENVYGF 163
Query: 188 AKQLIERLIYAEGAEN---GLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNL 244
+K ++ + + +N GL R FN GPR + E ++ +
Sbjct: 164 SKLCMDEFVLSHSNDNVQVGL-----RYFNVYGPREFY-------KEKTASMVLQLALGA 211
Query: 245 LRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVG 290
+ + +KL + G+ R F+YI+D I+A + ++ A+ +G ++NVG
Sbjct: 212 MAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMK--AQKSG-VYNVG 254
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 94/209 (44%), Gaps = 38/209 (18%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQT----------GADR 69
+C+ G GF+GS + K LLE + + N I+ +PE + +++
Sbjct: 4 VCVTGGTGFLGSWII-KSLLENGYSV------NTTIRA--DPERKRDVSFLTNLPGASEK 54
Query: 70 IQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYN-TRPLDTIYSNFID-ALPVVKYC 127
+ F ++ + I+ + + +P D+ + P + + +D AL ++K C
Sbjct: 55 LHFFNADLSNPDSFAAAIEGC---VGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKAC 111
Query: 128 --SENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSY 185
S+ KR I+ S+ G + SF KD + + + + + S++ W+Y
Sbjct: 112 VNSKTVKRFIYTSS----GSAV-SFNGKDKDVLDESDW------SDVDLLRSVKPFGWNY 160
Query: 186 ACAKQLIERLIYAEGAENGLE-FTIVRPF 213
A +K L E+ + G +NG++ T++ PF
Sbjct: 161 AVSKTLAEKAVLEFGEQNGIDVVTLILPF 189
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 19 TICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK 78
TI + G G+IGSH ++L ++A ++ N K + + E TG FH ++
Sbjct: 7 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITG-KTPAFHETDVS 65
Query: 79 HDSRLEGLIKMADLT--INLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLI 135
+ L + +T I+ AA+ + +P++ +N L +++ E KR++
Sbjct: 66 DERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIV 125
Query: 136 HFSTCEVYGKTIGSFLPKDSPL 157
S+ VYG +P+ SP+
Sbjct: 126 FSSSATVYG------VPERSPI 141
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/302 (20%), Positives = 123/302 (40%), Gaps = 46/302 (15%)
Query: 19 TICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIK 78
+I + G G+IGSH +K++ E ++ D ++ E GA +F+ +++
Sbjct: 3 SILICGGAGYIGSHAVKKLVDEGLSVVVV-----DNLQTGHEDAITEGA---KFYNGDLR 54
Query: 79 HDSRLEGLIKMADL--TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLI 135
+ L + ++ ++ AA +PL +N AL +++ E + I
Sbjct: 55 DKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFI 114
Query: 136 HFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERL 195
ST YG+ + +++ +P +Y K IE++
Sbjct: 115 FSSTAATYGEVDVDLITEET--MTNPTN--------------------TYGETKLAIEKM 152
Query: 196 IYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEG--VPRVLACFSNNLLRRQPLKLV 253
++ + L + I R FN G + I G D E +P VL L +R+ + +
Sbjct: 153 LHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQV---ALGQREKIMMF 209
Query: 254 D------GGQSQRTFIYIKDAIEAVLLMIENPARAN-GHIFNVGNPHNEVTVRQLAEMMT 306
G R +I+++D + A L +++ +N+GN N +V+++ + +
Sbjct: 210 GDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQNGGESDFYNLGNG-NGFSVKEIVDAVR 268
Query: 307 EV 308
EV
Sbjct: 269 EV 270
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 78/374 (20%), Positives = 144/374 (38%), Gaps = 57/374 (15%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK-------HLLEPESQTGADRIQF 72
+ + G G+IGSH + LLE + + +D +++ + L + TG ++F
Sbjct: 5 VLVTGGAGYIGSHTVLE-LLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRS-VEF 62
Query: 73 HRLNIKHDSRLEGLIKMADL--TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN 130
++I L+ L K I+ A + + +PLD N + +++ +
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 131 N-KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAK 189
K L+ S+ VYG +P Y L E A P G S +
Sbjct: 123 GVKNLVFSSSATVYG---------------NPQYLPLDE-AHP-TGGCTNPYGKSKFFIE 165
Query: 190 QLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL--RR 247
++I L A+ N + ++R FN G G D +G+P L + + + RR
Sbjct: 166 EMIRDLCQADKTWNAV---LLRYFNPTGAHASGCIGED--PQGIPNNLMPYVSQVAIGRR 220
Query: 248 QPLKL------VDGGQSQRTFIYIKDAIEAVLLMIENPARANG-HIFNVGNPHNEVTVRQ 300
+ L + + G R +I++ D + + + G I+N+G +V Q
Sbjct: 221 EALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTG-YSVLQ 279
Query: 301 LAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSL 360
+ + M K SG+ P V+ +E D + ++ ++LGW L
Sbjct: 280 MVQAME----KASGKKI---PYKVVARRE------GDVAACYANPSLAQEELGWTAALGL 326
Query: 361 WDLLESTLTYQHRT 374
+ E +Q +
Sbjct: 327 DRMCEDLWRWQKQN 340
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 120/306 (39%), Gaps = 36/306 (11%)
Query: 13 RPIKPVTICMIGAGGFIGSHLCEKILLETPHKI--LALDVYND-KIKHLLEPESQTGADR 69
PI T C++G GF+ S L K+LL+ + + D N K+ HLLE +
Sbjct: 5 HPIGKKTACVVGGTGFVASLLV-KLLLQKGYAVNTTVRDPDNQKKVSHLLELQE---LGD 60
Query: 70 IQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTR--PLDTIYSNFIDALPVVKYC 127
++ R ++ + E I D ++A TP + + D I + V+K C
Sbjct: 61 LKIFRADLTDELSFEAPIAGCDFVFHVA---TPVHFASEDPENDMIKPAIQGVVNVMKAC 117
Query: 128 S--ENNKRLIHFSTCEVY--GKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRW 183
+ ++ KR+I S+ + G+ L D D + S + W
Sbjct: 118 TRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLT-----------SAKPPTW 166
Query: 184 SYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNN 243
Y +K L E+ + EN ++ V P G + D PS + ++ + N
Sbjct: 167 GYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTS----DVPSS-IGLAMSLITGN 221
Query: 244 LLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAE 303
+K + + +++D A + + E + + +I N +V +LA+
Sbjct: 222 EFLINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKESASGRYICCAAN----TSVPELAK 277
Query: 304 MMTEVY 309
+++ Y
Sbjct: 278 FLSKRY 283
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 78/374 (20%), Positives = 143/374 (38%), Gaps = 57/374 (15%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK-------HLLEPESQTGADRIQF 72
+ + G G+IGSH + LLE + + +D +++ + L + TG ++F
Sbjct: 5 VLVTGGAGYIGSHTVLE-LLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRS-VEF 62
Query: 73 HRLNIKHDSRLEGLIKMADL--TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN 130
++I L+ L K I+ A + + +PLD N + +++ +
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 131 N-KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAK 189
K L+ S+ VYG +P Y L E A P G S +
Sbjct: 123 GVKNLVFSSSATVYG---------------NPQYLPLDE-AHP-TGGCTNPYGKSKFFIE 165
Query: 190 QLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL--RR 247
++I L A+ N ++R FN G G D +G+P L + + + RR
Sbjct: 166 EMIRDLCQADKTWN---VVLLRYFNPTGAHASGCIGED--PQGIPNNLMPYVSQVAIGRR 220
Query: 248 QPLKL------VDGGQSQRTFIYIKDAIEAVLLMIENPARANG-HIFNVGNPHNEVTVRQ 300
+ L + + G R +I++ D + + + G I+N+G +V Q
Sbjct: 221 EALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTG-YSVLQ 279
Query: 301 LAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSL 360
+ + M K SG+ P V+ +E D + ++ ++LGW L
Sbjct: 280 MVQAME----KASGKKI---PYKVVARRE------GDVAACYANPSLAQEELGWTAALGL 326
Query: 361 WDLLESTLTYQHRT 374
+ E +Q +
Sbjct: 327 DRMCEDLWRWQKQN 340
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 115/285 (40%), Gaps = 45/285 (15%)
Query: 15 IKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYN-------DKIKHLLEPESQTGA 67
P T + G GFIGS+L EK LL+ ++ LD ++ D++K L+ E +
Sbjct: 36 FSPKTWLITGVAGFIGSNLLEK-LLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWS-- 92
Query: 68 DRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC 127
R F +I+ + E ++K D ++ AA+ + P+ T +N L ++
Sbjct: 93 -RFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 151
Query: 128 SENN-KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYA 186
+ + ++ YG D P A P + +I YA
Sbjct: 152 KNAQVQSFTYAASSSTYG---------DHP-------------ALPKVEENIGNPLSPYA 189
Query: 187 CAKQLIERLIYAE--GAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNL 244
K + E IYA+ G + +R FN G R D P+ V+ ++ +
Sbjct: 190 VTKYVNE--IYAQVYARTYGFKTIGLRYFNVFGRRQD-------PNGAYAAVIPKWTAAM 240
Query: 245 LRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNV 289
L+ + + G++ R F YI + I+ +L A +I+NV
Sbjct: 241 LKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNV 285
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 78/374 (20%), Positives = 143/374 (38%), Gaps = 57/374 (15%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIK-------HLLEPESQTGADRIQF 72
+ + G G+IGSH + LLE + + +D +++ + L + TG ++F
Sbjct: 5 VLVTGGAGYIGSHTVLE-LLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRS-VEF 62
Query: 73 HRLNIKHDSRLEGLIKMADL--TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN 130
++I L+ L K I+ A + + +PLD N + +++ +
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 131 N-KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAK 189
K L+ S+ VYG +P Y L E A P G S +
Sbjct: 123 GVKNLVFSSSATVYG---------------NPQYLPLDE-AHP-TGGCTNPYGKSKFFIE 165
Query: 190 QLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL--RR 247
++I L A+ N ++R FN G G D +G+P L + + + RR
Sbjct: 166 EMIRDLCQADKTWN---VVLLRYFNPTGAHASGCIGED--PQGIPNNLMPYVSQVAIGRR 220
Query: 248 QPLKL------VDGGQSQRTFIYIKDAIEAVLLMIENPARANG-HIFNVGNPHNEVTVRQ 300
+ L + + G R +I++ D + + + G I+N+G +V Q
Sbjct: 221 EALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTG-YSVLQ 279
Query: 301 LAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSL 360
+ + M K SG+ P V+ +E D + ++ ++LGW L
Sbjct: 280 MVQAME----KASGKKI---PYKVVARRE------GDVAACYANPSLAQEELGWTAALGL 326
Query: 361 WDLLESTLTYQHRT 374
+ E +Q +
Sbjct: 327 DRMCEDLWRWQKQN 340
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 47/287 (16%)
Query: 15 IKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYN-------DKIKHLLEPESQTGA 67
P T + G GFIGS+L EK LL+ ++ LD ++ D++K L+ E +
Sbjct: 23 FSPKTWLITGVAGFIGSNLLEK-LLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWS-- 79
Query: 68 DRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC 127
R F +I+ + E ++K D ++ AA+ + P+ T +N L ++ +
Sbjct: 80 -RFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNIL-HA 137
Query: 128 SENN--KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSY 185
++N + + ++ YG D P A P + +I Y
Sbjct: 138 AKNAQVQSFTYAASSSTYG---------DHP-------------ALPKVEENIGNPLSPY 175
Query: 186 ACAKQLIERLIYAE--GAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNN 243
A K + E IYA+ G + +R FN G R D P+ V+ ++
Sbjct: 176 AVTKYVNE--IYAQVYARTYGFKTIGLRYFNVFGRRQD-------PNGAYAAVIPKWTAA 226
Query: 244 LLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVG 290
+L+ + + G++ R F YI + I+ +L A +I+NV
Sbjct: 227 MLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVA 273
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 115/286 (40%), Gaps = 45/286 (15%)
Query: 15 IKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYN-------DKIKHLLEPESQTGA 67
P T + G GFIGS+L EK LL+ ++ LD ++ D++K L+ E +
Sbjct: 23 FSPKTWLITGVAGFIGSNLLEK-LLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWS-- 79
Query: 68 DRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC 127
R F +I+ + E ++K D ++ AA+ + P+ T +N L ++
Sbjct: 80 -RFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 138
Query: 128 SENN-KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYA 186
+ + ++ YG D P A P + +I YA
Sbjct: 139 KNAQVQSFTYAASSSTYG---------DHP-------------ALPKVEENIGNPLSPYA 176
Query: 187 CAKQLIERLIYAE--GAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNL 244
K + E IYA+ G + +R FN G R D P+ V+ ++ +
Sbjct: 177 VTKYVNE--IYAQVYARTYGFKTIGLRYFNVFGRRQD-------PNGAYAAVIPKWTAAM 227
Query: 245 LRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVG 290
L+ + + G++ R F YI + I+ +L A +I+NV
Sbjct: 228 LKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVA 273
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 115/286 (40%), Gaps = 45/286 (15%)
Query: 15 IKPVTICMIGAGGFIGSHLCEKILLETPHKILALDVYN-------DKIKHLLEPESQTGA 67
P T + G GFIGS+L EK LL+ ++ LD ++ D++K L+ E +
Sbjct: 17 FSPKTWLITGVAGFIGSNLLEK-LLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWS-- 73
Query: 68 DRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC 127
R F +I+ + E ++K D ++ AA+ + P+ T +N L ++
Sbjct: 74 -RFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 132
Query: 128 SENN-KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYA 186
+ + ++ YG D P A P + +I YA
Sbjct: 133 KNAQVQSFTYAASSSTYG---------DHP-------------ALPKVEENIGNPLSPYA 170
Query: 187 CAKQLIERLIYAE--GAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNL 244
K + E IYA+ G + +R FN G R D P+ V+ ++ +
Sbjct: 171 VTKYVNE--IYAQVYARTYGFKTIGLRYFNVFGRRQD-------PNGAYAAVIPKWTAAM 221
Query: 245 LRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVG 290
L+ + + G++ R F YI + I+ +L A +I+NV
Sbjct: 222 LKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVA 267
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 8/149 (5%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNIKH 79
I + G G +GS+L E L + H+IL +D + + +L P + G I+ +
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQG-HEILVIDNFATGKREVLPPVA--GLSVIEGSVTDAGL 79
Query: 80 DSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFS 138
R K + + AA P D+ + +N ++ V K S+ KRL++F
Sbjct: 80 LERAFDSFKPTHVVHSAAAYKDPDDWA----EDAATNVQGSINVAKAASKAGVKRLLNFQ 135
Query: 139 TCEVYGKTIGSFLPKDSPLRQDPAYYVLK 167
T YG+ +P DSP +Y + K
Sbjct: 136 TALCYGRPATVPIPIDSPTAPFTSYGISK 164
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 26/136 (19%)
Query: 185 YACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNL 244
YA +K E + G GL++ +R N GPR D G V+A F+ +
Sbjct: 143 YAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQD--------PHGEAGVVAIFAERV 194
Query: 245 LRRQPLKLV------DGGQSQRTFIYIKDAIEA---VLLMIENPARANGHIFNVGNPHNE 295
L+ P+ L D G R ++Y+ D EA L +E I+NVG
Sbjct: 195 LKGLPVTLYARKTPGDEG-CVRDYVYVGDVAEAHALALFSLEG-------IYNVGTGEGH 246
Query: 296 VTVRQLAEMMTEVYAK 311
T R++ + E K
Sbjct: 247 -TTREVLMAVAEAAGK 261
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 248 QPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNE-VTVRQLAEMMT 306
PL + G R ++ I+D ++ V + I NPA+A F V N E +V +LA ++T
Sbjct: 261 HPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGE--FRVFNQFTEQFSVNELASLVT 318
Query: 307 EVYAKVSGEA-ALEEPTVDVSSKEFY 331
+ +K+ + + P V ++E Y
Sbjct: 319 KAGSKLGLDVKKMTVPNPRVEAEEHY 344
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 248 QPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNE-VTVRQLAEMMT 306
PL + G R ++ I+D ++ V + I NPA+A F V N E +V +LA ++T
Sbjct: 261 HPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGE--FRVFNQFTEQFSVNELASLVT 318
Query: 307 EVYAKVSGEA-ALEEPTVDVSSKEFY 331
+ +K+ + + P V ++E Y
Sbjct: 319 KAGSKLGLDVKKMTVPNPRVEAEEHY 344
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 248 QPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNE-VTVRQLAEMMT 306
PL + G R ++ I+D ++ V + I NPA+A F V N E +V +LA ++T
Sbjct: 251 HPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGE--FRVFNQFTEQFSVNELASLVT 308
Query: 307 EVYAKVSGEA-ALEEPTVDVSSKEFY 331
+ +K+ + + P V ++E Y
Sbjct: 309 KAGSKLGLDVKKMTVPNPRVEAEEHY 334
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 100/285 (35%), Gaps = 54/285 (18%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNI-- 77
I + G GFIGS++ + + + IL +D D K + LNI
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF------------VNLVDLNIAD 49
Query: 78 ---KHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIY---SNFIDALPVVKYCSENN 131
K D ++ ++ + A A +T D Y +N+ + ++ YC E
Sbjct: 50 YMDKEDFLIQ-IMAGEEFGDVEAIFHEGAXSSTTEWDGKYMMDNNYQYSKELLHYCLERE 108
Query: 132 KRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQL 191
++ S+ YG F+ EK Y +K L
Sbjct: 109 IPFLYASSAATYGGRTSDFIESRE----------------------YEKPLNVYGYSKFL 146
Query: 192 IERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLK 251
+ + E + R FN GPR +G + V + L + K
Sbjct: 147 FDEYVRQILPEANSQIVGFRYFNVYGPR-------EGHKGSMASVAFHLNTQLNNGESPK 199
Query: 252 LVDGGQS-QRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNE 295
L +G ++ +R F+Y+ D + L +EN IFN+G E
Sbjct: 200 LFEGSENFKRDFVYVGDVADVNLWFLENGVSG---IFNLGTGRAE 241
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 80/407 (19%), Positives = 154/407 (37%), Gaps = 82/407 (20%)
Query: 18 VTICMIGAGGFIGSHLCEKILLETPHKILALDVY---NDKIKHLLEPESQTG-------- 66
V +C G G+IGSH +L +T H ++ +D + K H+ E+
Sbjct: 5 VLVC--GGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62
Query: 67 ----ADRIQFHRL-NIKHDSRLEGLIKMA---DLTINLAAICTPADYNTRPLDTIYSNFI 118
ADR + +++++ L G+ D +++ A + PL +N +
Sbjct: 63 KPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVV 122
Query: 119 DALPVVK-YCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFG 176
L +++ ++I S+ ++G T+GS + +A P
Sbjct: 123 GILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGS----------------VSTNAEPIDIN 166
Query: 177 SIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPG--IDGPSEGVP 234
+ + Y +K + ER+I G++ +R FN G D G G + +P
Sbjct: 167 AKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIP 226
Query: 235 RVLACFSNNLL--------------RRQPLKLVD----GGQSQRTFIYIKDAIEAVLLMI 276
+L +++ +R P+ D G R ++++ D A +L +
Sbjct: 227 IILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILAL 286
Query: 277 E-------NPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKE 329
+ N +FN+G +VR++ EV K +G P + +E
Sbjct: 287 DYVEKLGPNDKSKYFSVFNLGTSRG-YSVREV----IEVARKTTGHPI---PVRECGRRE 338
Query: 330 FYGEGYDDSDKRIPDMTIINQQLGWNPK-TSLWDLLESTLTYQHRTY 375
D + + LGW PK +L ++E++ +Q RT+
Sbjct: 339 ------GDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQ-RTH 378
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 19/161 (11%)
Query: 176 GSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDF-------IPGIDG 228
G + Y+ AK++I+ A + G FT V P N GP +F +PG+
Sbjct: 133 GPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGL-- 190
Query: 229 PSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFN 288
+ +V S+ L + G +R FIY D + + ++ I +
Sbjct: 191 ----IHKVHLAKSSG----SALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILS 242
Query: 289 VGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKE 329
VG +EV++++ AE + E GE + D K+
Sbjct: 243 VGE-EDEVSIKEAAEAVVEA-MDFHGEVTFDTTKSDGQFKK 281
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 107/287 (37%), Gaps = 58/287 (20%)
Query: 20 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGADRIQFHRLNI-K 78
I + G GFIGS++ + + + IL +D D K + LNI
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF------------VNLVDLNIAD 96
Query: 79 HDSRLEGLIKM--------ADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN 130
+ + + LI++ + + A + +++ + + + +N+ + ++ YC E
Sbjct: 97 YMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLER 154
Query: 131 NKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPC-IFGSIEKQRWSYACAK 189
++ S+ YG F+ +E P +FG +K
Sbjct: 155 EIPFLYASSAATYGGRTSDFIES-------------REYEKPLNVFG----------YSK 191
Query: 190 QLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQP 249
L + + E + R FN GPR +G + V + L +
Sbjct: 192 FLFDEYVRQILPEANSQIVGFRYFNVYGPR-------EGHKGSMASVAFHLNTQLNNGES 244
Query: 250 LKLVDGGQS-QRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNE 295
KL +G ++ +R F+Y+ D + L +EN IFN+G E
Sbjct: 245 PKLFEGSENFKRDFVYVGDVADVNLWFLENGVSG---IFNLGTGRAE 288
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 19/161 (11%)
Query: 176 GSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDF-------IPGIDG 228
G + Y+ AK++I+ A + G FT V P N GP +F +PG+
Sbjct: 134 GPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGL-- 191
Query: 229 PSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFN 288
+ +V S+ L + G +R FIY D + + ++ I +
Sbjct: 192 ----IHKVHLAKSSG----SALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILS 243
Query: 289 VGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKE 329
VG +EV++++ AE + E GE + D K+
Sbjct: 244 VGE-EDEVSIKEAAEAVVEA-MDFHGEVTFDTTKSDGQFKK 282
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 25/130 (19%)
Query: 251 KLVDGG-QSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVY 309
KLV G ++R + Y + +EA+ LM++ P + ++ G H TVR+ E
Sbjct: 209 KLVLGNLNAKRDWGYAPEYVEAMWLMMQQP-EPDDYVIATGETH---TVREFVEKA---- 260
Query: 310 AKVSG-----------EAALEEPTVDV---SSKEFYGEGYDDSDKRIPDMTIINQQLGWN 355
AK++G E ++ T V S+EF+ D P+ + ++LGW
Sbjct: 261 AKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAM--KKLGWK 318
Query: 356 PKTSLWDLLE 365
P+T+ +L+E
Sbjct: 319 PRTTFDELVE 328
>pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal
Six- Histidine Tag
Length = 432
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 23/118 (19%)
Query: 23 IGAGGFIGSHLCEKILLETPHKILALDV-------YNDKIKHLLEPESQT--GADRIQFH 73
I G++G L +L+ H+++ALD+ N KI +++ E Q + F
Sbjct: 41 ISGTGYVG--LSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFR 98
Query: 74 RLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN 131
KHD+ + AD I I TP DY+ + T Y N V++ +E N
Sbjct: 99 ATTDKHDA-----YRNADYVI----IATPTDYDPK---TNYFNTSTVEAVIRDVTEIN 144
>pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase
pdb|3PJG|A Chain A, Crystal Structure Of Udp-Glucose Dehydrogenase From
Klebsiella Pneumoniae Complexed With Product
Udp-Glucuronic Acid
pdb|3PLN|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Udp-Glucose
pdb|3PLR|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Nadh And Udp-Glucose
Length = 424
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 23/118 (19%)
Query: 23 IGAGGFIGSHLCEKILLETPHKILALDV-------YNDKIKHLLEPESQT--GADRIQFH 73
I G++G L +L+ H+++ALD+ N KI +++ E Q + F
Sbjct: 41 ISGTGYVG--LSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFR 98
Query: 74 RLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN 131
KHD+ + AD I I TP DY+ + T Y N V++ +E N
Sbjct: 99 ATTDKHDA-----YRNADYVI----IATPTDYDPK---TNYFNTSTVEAVIRDVTEIN 144
>pdb|2DZR|A Chain A, Solution Structure Of Rsgi Ruh-067, A Gtf2i Domain In
Human Cdna
Length = 99
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 28/99 (28%)
Query: 143 YGKTIGSFLPKDSP---LRQDPAYYVLK------EDASPCIFGSIEKQRWSYACAKQLIE 193
YG+ +G P P ++ +P +++ PC FGS Q +E
Sbjct: 20 YGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKPCTFGS------------QNLE 67
Query: 194 RLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEG 232
R++ + ++FT+ RPF + P+ P GPS G
Sbjct: 68 RIL---AVADKIKFTVTRPFQGLIPK----PDESGPSSG 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,966,945
Number of Sequences: 62578
Number of extensions: 511308
Number of successful extensions: 1209
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1106
Number of HSP's gapped (non-prelim): 77
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)