Query 016371
Match_columns 390
No_of_seqs 354 out of 3795
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 06:15:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3207 Beta-tubulin folding c 100.0 1.4E-57 3.1E-62 408.6 15.7 361 8-390 2-366 (505)
2 KOG2982 Uncharacterized conser 99.9 3.6E-27 7.7E-32 203.2 8.1 241 133-390 46-291 (418)
3 PLN00113 leucine-rich repeat r 99.9 2E-22 4.3E-27 214.1 13.7 232 123-387 108-341 (968)
4 PLN00113 leucine-rich repeat r 99.9 4.1E-22 8.8E-27 211.8 14.7 240 131-386 139-388 (968)
5 KOG4194 Membrane glycoprotein 99.9 1E-23 2.2E-28 196.8 0.9 228 127-386 144-373 (873)
6 KOG0444 Cytoskeletal regulator 99.9 3.9E-24 8.4E-29 201.0 -3.0 239 115-386 38-276 (1255)
7 KOG4194 Membrane glycoprotein 99.9 5.7E-23 1.2E-27 191.8 2.7 236 120-387 113-350 (873)
8 PF01302 CAP_GLY: CAP-Gly doma 99.8 2E-20 4.4E-25 130.1 8.1 67 11-78 1-68 (69)
9 KOG0444 Cytoskeletal regulator 99.8 5.1E-22 1.1E-26 186.9 -1.1 230 121-386 115-370 (1255)
10 cd00116 LRR_RI Leucine-rich re 99.7 4.7E-18 1E-22 158.1 8.6 251 119-386 38-315 (319)
11 cd00116 LRR_RI Leucine-rich re 99.7 3.2E-18 7E-23 159.2 7.4 248 125-387 16-287 (319)
12 KOG3206 Alpha-tubulin folding 99.7 3.9E-18 8.5E-23 138.2 6.8 73 8-81 148-222 (234)
13 PRK15387 E3 ubiquitin-protein 99.7 1.1E-17 2.5E-22 167.9 10.8 223 114-361 206-458 (788)
14 KOG0472 Leucine-rich repeat pr 99.7 9.5E-21 2.1E-25 169.9 -10.9 89 124-216 83-171 (565)
15 KOG0472 Leucine-rich repeat pr 99.7 7.5E-20 1.6E-24 164.2 -8.0 241 121-385 57-304 (565)
16 PRK15387 E3 ubiquitin-protein 99.7 6.5E-17 1.4E-21 162.5 10.9 196 120-338 233-460 (788)
17 PF14580 LRR_9: Leucine-rich r 99.7 2.5E-17 5.4E-22 136.9 4.2 135 228-390 17-152 (175)
18 KOG0618 Serine/threonine phosp 99.7 3.9E-18 8.5E-23 167.4 -1.2 214 134-359 243-487 (1081)
19 KOG4237 Extracellular matrix p 99.6 1.4E-17 3.1E-22 149.3 -0.9 241 114-364 51-362 (498)
20 KOG0618 Serine/threonine phosp 99.6 5.2E-18 1.1E-22 166.5 -4.7 209 124-362 279-514 (1081)
21 PLN03210 Resistant to P. syrin 99.6 4.3E-15 9.4E-20 159.3 17.0 250 120-387 622-902 (1153)
22 PRK15370 E3 ubiquitin-protein 99.6 5.8E-16 1.3E-20 156.4 8.5 233 119-386 188-423 (754)
23 KOG0617 Ras suppressor protein 99.6 5.6E-18 1.2E-22 135.6 -5.0 163 128-302 29-191 (264)
24 PRK15370 E3 ubiquitin-protein 99.6 8.5E-16 1.8E-20 155.2 9.0 214 121-362 211-429 (754)
25 KOG0617 Ras suppressor protein 99.6 1.5E-17 3.2E-22 133.2 -5.7 183 150-362 28-213 (264)
26 COG5244 NIP100 Dynactin comple 99.6 3.3E-15 7.1E-20 135.6 7.3 68 6-77 1-68 (669)
27 PLN03210 Resistant to P. syrin 99.6 4.1E-14 8.9E-19 151.8 16.0 229 133-387 590-834 (1153)
28 KOG1909 Ran GTPase-activating 99.6 7E-16 1.5E-20 136.7 1.8 228 122-361 48-311 (382)
29 KOG4237 Extracellular matrix p 99.5 4E-16 8.7E-21 140.1 -5.6 229 114-364 72-402 (498)
30 KOG1909 Ran GTPase-activating 99.5 3.4E-14 7.4E-19 126.1 5.4 267 107-388 4-308 (382)
31 KOG1259 Nischarin, modulator o 99.4 8.5E-15 1.8E-19 127.4 -0.7 207 124-362 174-413 (490)
32 KOG0971 Microtubule-associated 99.4 2.5E-13 5.4E-18 132.1 7.1 72 5-78 2-73 (1243)
33 KOG3207 Beta-tubulin folding c 99.4 5.5E-13 1.2E-17 121.7 4.7 205 155-384 120-332 (505)
34 KOG0532 Leucine-rich repeat (L 99.3 4E-14 8.6E-19 132.9 -4.5 198 130-359 73-271 (722)
35 PF14580 LRR_9: Leucine-rich r 99.3 5.8E-13 1.3E-17 110.8 2.6 136 201-362 15-152 (175)
36 KOG1259 Nischarin, modulator o 99.3 1.2E-12 2.6E-17 114.1 2.6 132 155-297 283-414 (490)
37 COG4886 Leucine-rich repeat (L 99.3 3.8E-12 8.3E-17 122.0 5.9 192 137-361 98-290 (394)
38 KOG4568 Cytoskeleton-associate 99.2 6.6E-12 1.4E-16 123.3 3.7 73 2-77 11-83 (664)
39 KOG0532 Leucine-rich repeat (L 99.2 5.3E-13 1.1E-17 125.4 -5.0 164 120-297 86-249 (722)
40 COG4886 Leucine-rich repeat (L 99.2 2.5E-11 5.3E-16 116.4 6.1 183 125-338 109-292 (394)
41 KOG1859 Leucine-rich repeat pr 99.1 1.5E-12 3.3E-17 125.5 -4.6 179 150-361 104-292 (1096)
42 KOG1644 U2-associated snRNP A' 99.1 1.2E-10 2.5E-15 96.3 4.9 110 257-389 42-151 (233)
43 KOG2120 SCF ubiquitin ligase, 99.0 2.4E-11 5.3E-16 105.9 -1.8 183 156-359 185-374 (419)
44 KOG0531 Protein phosphatase 1, 99.0 8.9E-11 1.9E-15 113.0 0.0 157 126-297 89-247 (414)
45 KOG2120 SCF ubiquitin ligase, 99.0 4E-11 8.6E-16 104.7 -2.7 201 133-353 186-392 (419)
46 KOG2982 Uncharacterized conser 98.9 2.7E-09 5.8E-14 93.4 7.3 201 120-337 85-291 (418)
47 KOG0531 Protein phosphatase 1, 98.9 2.3E-10 5E-15 110.1 -0.1 216 129-361 69-290 (414)
48 PF13855 LRR_8: Leucine rich r 98.8 3.9E-09 8.5E-14 72.3 3.6 61 282-360 1-61 (61)
49 COG5238 RNA1 Ran GTPase-activa 98.8 5.7E-09 1.2E-13 90.3 5.2 242 108-362 5-286 (388)
50 PF13855 LRR_8: Leucine rich r 98.8 8.9E-09 1.9E-13 70.5 4.1 61 230-294 1-61 (61)
51 COG5238 RNA1 Ran GTPase-activa 98.7 9.8E-09 2.1E-13 88.8 3.3 248 103-363 31-318 (388)
52 KOG1859 Leucine-rich repeat pr 98.7 2.2E-10 4.8E-15 110.9 -8.0 106 155-270 186-292 (1096)
53 PLN03150 hypothetical protein; 98.6 5.1E-08 1.1E-12 98.4 7.0 85 158-245 420-505 (623)
54 PLN03150 hypothetical protein; 98.6 9.6E-08 2.1E-12 96.4 7.3 106 134-242 420-527 (623)
55 KOG4341 F-box protein containi 98.5 1.2E-08 2.7E-13 93.2 -0.5 258 119-385 151-433 (483)
56 KOG2123 Uncharacterized conser 98.5 5.8E-09 1.3E-13 90.5 -2.7 111 256-389 18-128 (388)
57 KOG4658 Apoptotic ATPase [Sign 98.5 7.8E-08 1.7E-12 99.5 4.2 106 132-240 545-652 (889)
58 KOG3665 ZYG-1-like serine/thre 98.5 7.5E-08 1.6E-12 97.2 3.9 160 181-357 121-284 (699)
59 KOG4341 F-box protein containi 98.5 9.6E-08 2.1E-12 87.5 3.1 162 203-383 292-457 (483)
60 KOG4568 Cytoskeleton-associate 98.4 9.5E-08 2.1E-12 94.4 0.7 72 5-79 151-222 (664)
61 KOG3556 Familial cylindromatos 98.4 8.4E-07 1.8E-11 82.6 6.8 77 8-85 235-319 (724)
62 KOG4579 Leucine-rich repeat (L 98.3 4.2E-08 9E-13 76.4 -1.8 111 230-362 27-137 (177)
63 KOG1644 U2-associated snRNP A' 98.3 7.4E-07 1.6E-11 74.1 5.1 87 205-297 42-128 (233)
64 KOG2739 Leucine-rich acidic nu 98.3 3.8E-07 8.2E-12 78.9 3.3 112 255-388 41-153 (260)
65 KOG3665 ZYG-1-like serine/thre 98.3 4E-07 8.8E-12 92.0 3.8 137 132-271 122-264 (699)
66 KOG4579 Leucine-rich repeat (L 98.3 9.3E-08 2E-12 74.5 -1.5 132 207-364 29-162 (177)
67 PF12799 LRR_4: Leucine Rich r 98.2 1.4E-06 3E-11 54.9 3.8 38 323-362 1-38 (44)
68 KOG4658 Apoptotic ATPase [Sign 98.2 1.7E-06 3.7E-11 89.8 4.7 154 130-292 521-678 (889)
69 PF12799 LRR_4: Leucine Rich r 98.1 1.9E-06 4.2E-11 54.2 2.8 41 282-340 1-41 (44)
70 KOG0241 Kinesin-like protein [ 98.1 2.9E-06 6.3E-11 84.4 4.2 70 6-82 1628-1697(1714)
71 KOG2123 Uncharacterized conser 97.9 5.2E-07 1.1E-11 78.6 -3.4 87 203-297 17-103 (388)
72 KOG1947 Leucine rich repeat pr 97.8 1.2E-05 2.6E-10 79.0 3.3 232 128-362 184-441 (482)
73 KOG1947 Leucine rich repeat pr 97.8 1.4E-05 3.1E-10 78.5 3.8 207 150-362 182-415 (482)
74 KOG2739 Leucine-rich acidic nu 97.8 4.3E-06 9.4E-11 72.5 -0.4 105 229-354 42-149 (260)
75 PRK15386 type III secretion pr 97.7 0.00026 5.7E-09 66.6 10.0 144 124-295 44-190 (426)
76 PRK15386 type III secretion pr 97.4 0.00076 1.7E-08 63.6 8.2 134 155-335 51-189 (426)
77 KOG4308 LRR-containing protein 97.2 9E-06 2E-10 78.9 -7.1 192 158-362 89-304 (478)
78 KOG4308 LRR-containing protein 96.9 5.2E-05 1.1E-09 73.7 -4.3 182 116-297 99-305 (478)
79 KOG3763 mRNA export factor TAP 96.9 0.00058 1.3E-08 65.4 2.7 94 280-389 216-312 (585)
80 PF13306 LRR_5: Leucine rich r 96.5 0.012 2.5E-07 46.5 7.5 103 228-357 10-112 (129)
81 PF13306 LRR_5: Leucine rich r 96.5 0.0075 1.6E-07 47.6 6.3 122 201-351 8-129 (129)
82 KOG3864 Uncharacterized conser 95.7 0.002 4.3E-08 54.1 -1.0 87 257-361 101-189 (221)
83 KOG3864 Uncharacterized conser 95.5 0.003 6.6E-08 53.0 -0.6 81 283-387 102-185 (221)
84 PF13504 LRR_7: Leucine rich r 95.0 0.016 3.5E-07 28.1 1.4 15 324-338 2-16 (17)
85 PF10781 DSRB: Dextransucrase 94.7 0.38 8.3E-06 31.0 7.3 59 9-76 1-61 (62)
86 PRK10708 hypothetical protein; 94.6 0.35 7.7E-06 31.2 7.1 58 9-75 1-60 (62)
87 PF00560 LRR_1: Leucine Rich R 94.2 0.017 3.6E-07 30.2 0.5 16 324-339 1-16 (22)
88 PF00560 LRR_1: Leucine Rich R 93.0 0.041 9E-07 28.6 0.7 12 184-195 2-13 (22)
89 PTZ00243 ABC transporter; Prov 92.8 0.15 3.4E-06 57.3 5.4 61 9-69 125-201 (1560)
90 KOG3763 mRNA export factor TAP 92.5 0.16 3.6E-06 49.2 4.4 83 153-236 215-307 (585)
91 KOG0473 Leucine-rich repeat pr 90.9 0.0036 7.7E-08 53.8 -7.6 87 253-361 38-124 (326)
92 smart00369 LRR_TYP Leucine-ric 90.4 0.26 5.7E-06 26.6 2.1 17 323-339 2-18 (26)
93 smart00370 LRR Leucine-rich re 90.4 0.26 5.7E-06 26.6 2.1 17 323-339 2-18 (26)
94 smart00365 LRR_SD22 Leucine-ri 88.1 0.45 9.7E-06 25.9 1.9 17 323-339 2-18 (26)
95 PF13516 LRR_6: Leucine Rich r 88.0 0.31 6.8E-06 25.8 1.2 16 155-170 1-16 (24)
96 PF09926 DUF2158: Uncharacteri 85.0 4.4 9.6E-05 26.4 5.6 43 9-53 1-44 (53)
97 smart00368 LRR_RI Leucine rich 80.7 2.4 5.2E-05 23.4 2.7 21 205-225 2-22 (28)
98 smart00367 LRR_CC Leucine-rich 80.1 1.3 2.7E-05 23.9 1.5 15 323-337 2-17 (26)
99 smart00364 LRR_BAC Leucine-ric 79.6 1.3 2.8E-05 24.1 1.3 17 323-339 2-18 (26)
100 KOG0473 Leucine-rich repeat pr 77.9 0.18 3.9E-06 43.7 -3.5 87 128-218 38-124 (326)
101 PF07154 DUF1392: Protein of u 73.5 4.7 0.0001 31.8 3.5 46 6-53 85-133 (150)
102 KOG4242 Predicted myosin-I-bin 70.8 34 0.00074 33.2 9.1 161 131-294 213-392 (553)
103 smart00446 LRRcap occurring C- 66.1 4 8.6E-05 22.2 1.2 19 369-387 4-22 (26)
104 PF11948 DUF3465: Protein of u 57.6 15 0.00031 28.9 3.4 20 42-61 106-130 (131)
105 PHA02146 hypothetical protein 55.4 15 0.00033 25.0 2.8 46 8-53 2-55 (86)
106 TIGR00864 PCC polycystin catio 48.8 14 0.0003 43.6 2.9 36 329-365 1-36 (2740)
107 PRK04306 50S ribosomal protein 48.1 13 0.00028 27.7 1.7 36 6-45 32-77 (98)
108 PF07723 LRR_2: Leucine Rich R 33.7 37 0.0008 18.3 1.7 13 158-170 2-14 (26)
109 KOG4600 Mitochondrial ribosoma 32.2 99 0.0021 24.4 4.4 43 7-49 70-116 (144)
110 PTZ00189 60S ribosomal protein 31.5 25 0.00055 28.6 1.2 39 6-48 31-79 (160)
111 PF00924 MS_channel: Mechanose 29.2 51 0.0011 28.0 2.8 24 7-33 59-82 (206)
112 PF10816 DUF2760: Domain of un 28.4 1.7E+02 0.0038 22.7 5.1 44 10-54 63-116 (125)
113 PF08750 CNP1: CNP1-like famil 27.8 2E+02 0.0044 23.0 5.7 38 7-48 35-77 (139)
114 TIGR02266 gmx_TIGR02266 Myxoco 24.9 2.7E+02 0.0058 20.0 5.8 43 7-49 35-84 (96)
115 KOG1665 AFH1-interacting prote 24.1 77 0.0017 27.5 2.8 40 205-244 171-210 (302)
116 TIGR00864 PCC polycystin catio 23.2 56 0.0012 39.0 2.3 34 236-272 1-34 (2740)
117 PRK10334 mechanosensitive chan 22.0 1.2E+02 0.0025 27.7 3.8 24 7-33 128-151 (286)
118 PF09191 CD4-extracel: CD4, ex 21.3 2.3E+02 0.0051 21.3 4.4 40 10-49 10-54 (108)
119 KOG4242 Predicted myosin-I-bin 21.0 1.6E+02 0.0035 28.8 4.5 36 327-362 333-368 (553)
120 PLN00190 60S ribosomal protein 20.7 50 0.0011 26.9 1.0 40 6-49 31-80 (158)
121 PF13403 Hint_2: Hint domain 20.7 1.3E+02 0.0028 24.2 3.5 25 7-33 19-43 (147)
122 PF14801 GCD14_N: tRNA methylt 20.6 82 0.0018 20.5 1.8 47 7-56 4-52 (54)
123 PRK14533 groES co-chaperonin G 20.3 1.3E+02 0.0028 22.1 3.0 14 6-19 51-64 (91)
124 PF12701 LSM14: Scd6-like Sm d 20.0 1E+02 0.0022 22.9 2.5 26 5-34 1-26 (96)
No 1
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-57 Score=408.57 Aligned_cols=361 Identities=31% Similarity=0.532 Sum_probs=314.4
Q ss_pred CCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCC-CCCCCEECCEEEEecCCCCcceeeeeccCCCCCCchH
Q 016371 8 SYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGN-GKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGISLPE 86 (390)
Q Consensus 8 ~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~-g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~~~~~~~ 86 (390)
.+.+|+||.|.+ .+|||||+|+|++|++.|+||||||++ |||+|.++|++||++..|++|||+++.++..+.++..
T Consensus 2 ~~~IG~RvkI~~---~~~Tvr~iG~V~g~~~~w~GvEWDd~~RGKH~G~vdgk~YF~~q~P~GGSFik~~kV~~p~d~~~ 78 (505)
T KOG3207|consen 2 TMEIGTRVKIGG---EIATVRYIGEVEGNNSKWYGVEWDDPVRGKHDGIVDGKRYFQTQHPNGGSFIKPGKVKFPTDLLR 78 (505)
T ss_pred ceeccceEEEcC---EEEEEEEEEEEcCCCCcceeeEecCCCccccCceecceeeeeeecCCCccccCCccCCCCccHHH
Confidence 478999999966 469999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCcccccceEEeecCCcceEEEEeChhHHHHHHhccccccEeecCCcccCCCCc-chhhhcCcccEEECCC
Q 016371 87 ALRVRYRGESSKEEEDEMYVLSASNKHVSIELVGKDKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTG 165 (390)
Q Consensus 87 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~ 165 (390)
++.++|........+. ...++.+++. +|.+||+++....+++++|+.+.|.++.+...+. .....|++++.||||.
T Consensus 79 t~~ery~e~~s~~sd~-~~~~si~nK~--vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~ 155 (505)
T KOG3207|consen 79 TFKERYYEKYSYSSDL-ESVLSISNKQ--VEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSR 155 (505)
T ss_pred HHHHHHHHhhcCCcch-hhHhhhcCce--eEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchh
Confidence 9999998875544333 3344556664 8999999999999999999999999999988875 5667789999999999
Q ss_pred CcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC--CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCcc
Q 016371 166 NLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG--LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSIS 243 (390)
Q Consensus 166 n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~--~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 243 (390)
|.+..|..+..++.+||+|+.|+++.|++...... -..+++|+.|.++.|.++|..+..+...||+|+.|+|..|...
T Consensus 156 NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~ 235 (505)
T KOG3207|consen 156 NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII 235 (505)
T ss_pred hhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc
Confidence 99999999999999999999999999998766542 3377899999999999999999999999999999999999522
Q ss_pred ccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCC
Q 016371 244 EITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQ 323 (390)
Q Consensus 244 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (390)
..... ....++.|++|||++|.+.+.+.....+.+|.|+.|+++.|.+.++..|+.....+ ...++
T Consensus 236 ~~~~~---~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k-----------t~~f~ 301 (505)
T KOG3207|consen 236 LIKAT---STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDK-----------THTFP 301 (505)
T ss_pred ceecc---hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhh-----------hcccc
Confidence 22111 24556899999999999999887777889999999999999999987676422111 46789
Q ss_pred CCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcccCC
Q 016371 324 NLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEVNS 390 (390)
Q Consensus 324 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i~~ 390 (390)
+|+.|+++.|+|.+|+.+..+..+++|+.|++..|++..+.. .+...+||++++|..||.+.|.+
T Consensus 302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~--~a~~~VIAr~~~l~~LN~~di~p 366 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD--TAKLLVIARISQLVKLNDVDISP 366 (505)
T ss_pred cceeeecccCccccccccchhhccchhhhhhccccccccccc--ceeEEeeeehhhhhhhcccccCh
Confidence 999999999999999999999999999999999999986552 67777899999999999998763
No 2
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=3.6e-27 Score=203.24 Aligned_cols=241 Identities=41% Similarity=0.638 Sum_probs=205.2
Q ss_pred cccEeecCCcccCCCCc--chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCC-CCCCccE
Q 016371 133 ELTSAALPYLGVSSPGA--NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLP-QLKSIRI 209 (390)
Q Consensus 133 ~L~~L~L~~~~i~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~ 209 (390)
.+..+.+.++.|...+. .++..+..++.|||.+|.+++|+++..++.+||+|++|+++.|.+...+..++ ...+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 44566777777877776 67777899999999999999999999999999999999999999988777664 7889999
Q ss_pred EEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccC-CCCCccEEEcCCCCCCCchhhhhcC-CCCCcCeE
Q 016371 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQ-GFDNLQLLNLEDNCIAEWSEILKLC-QIRSLEQL 287 (390)
Q Consensus 210 L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L 287 (390)
|.|+++.+.|......+..+|.+++|+++.|.+...... ..... .-+.+++|++..|....|.....++ -+|++..+
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~D-d~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLD-DNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccc-cccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 999999999999999999999999999999976543211 00111 1257888999999888776654454 37999999
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcc
Q 016371 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGG 367 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 367 (390)
.+..|+|.+...... +.+++.+..|+|+.|+|.+|..++.+..+|.|..|++++||+.+.-.+.
T Consensus 205 ~v~e~PlK~~s~ek~----------------se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~ 268 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKG----------------SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG 268 (418)
T ss_pred eeecCcccchhhccc----------------CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCC
Confidence 999999988754443 6788999999999999999999999999999999999999999988888
Q ss_pred hhhhhhhhhcCCceEecCcccCC
Q 016371 368 ISRFAIIARLGKIKILNGSEVNS 390 (390)
Q Consensus 368 ~~~~~~i~~l~~L~~Ln~s~i~~ 390 (390)
.+++.+||||+++++||+|.|+|
T Consensus 269 err~llIaRL~~v~vLNGskIss 291 (418)
T KOG2982|consen 269 ERRFLLIARLTKVQVLNGSKISS 291 (418)
T ss_pred cceEEEEeeccceEEecCcccch
Confidence 99999999999999999999986
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2e-22 Score=214.12 Aligned_cols=232 Identities=22% Similarity=0.272 Sum_probs=168.4
Q ss_pred HHHHHH-hccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-C
Q 016371 123 KIQDKF-SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-G 200 (390)
Q Consensus 123 ~l~~~~-~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~ 200 (390)
.+|..+ ..+++|++|++++|.+.+..+. ..+++|++|+|++|.+.+ .+|..+..+++|++|++++|.+.+..+ .
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSG--EIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccc--cCChHHhcCCCCCEEECccCcccccCChh
Confidence 345443 3777777777777777654432 124777888888877765 566777778888888888877765554 5
Q ss_pred CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCC
Q 016371 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (390)
Q Consensus 201 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 280 (390)
+..+++|++|++++|.+.. .++..+..+++|++|++++|.+++..+. .++.+++|++|++++|.+.+..+ ..++.
T Consensus 184 ~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p-~~l~~ 258 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLSGEIPY---EIGGLTSLNHLDLVYNNLTGPIP-SSLGN 258 (968)
T ss_pred hhhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEECcCCccCCcCCh---hHhcCCCCCEEECcCceeccccC-hhHhC
Confidence 6777788888888877764 3445557777888888888877765443 56777788888888887765443 45677
Q ss_pred CCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCC
Q 016371 281 IRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPV 360 (390)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l 360 (390)
+++|++|++++|.+++.. |.. +..+++|++|++++|.+++. .+..+..+++|+.|++++|.+
T Consensus 259 l~~L~~L~L~~n~l~~~~-p~~----------------l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPI-PPS----------------IFSLQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred CCCCCEEECcCCeeeccC-chh----------------HhhccCcCEEECcCCeeccC-CChhHcCCCCCcEEECCCCcc
Confidence 788888888888776542 333 56789999999999999864 346788899999999999998
Q ss_pred CCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 361 SDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 361 ~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
.. ..+.. ++.+++|+.|+++.
T Consensus 321 ~~----~~~~~--~~~l~~L~~L~L~~ 341 (968)
T PLN00113 321 TG----KIPVA--LTSLPRLQVLQLWS 341 (968)
T ss_pred CC----cCChh--HhcCCCCCEEECcC
Confidence 73 45655 78899999998864
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=4.1e-22 Score=211.76 Aligned_cols=240 Identities=23% Similarity=0.257 Sum_probs=116.8
Q ss_pred cccccEeecCCcccCCCCc-chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCcc
Q 016371 131 FEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIR 208 (390)
Q Consensus 131 l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~ 208 (390)
+++|++|++++|.+.+..+ .+.. +++|++|++++|.+.. .+|..+.++++|++|++++|.+.+..+ .+..+++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhc-CCCCCEEECccCcccc--cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 4455555555555543333 2222 3555555555555443 344445555555555555555544333 344555555
Q ss_pred EEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEe
Q 016371 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (390)
Q Consensus 209 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 288 (390)
+|++++|.+.+ .++..+..+++|++|++++|.+++..+. .++.+++|+.|++++|.+.+..+ ..+..+++|++|+
T Consensus 216 ~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ 290 (968)
T PLN00113 216 WIYLGYNNLSG-EIPYEIGGLTSLNHLDLVYNNLTGPIPS---SLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLD 290 (968)
T ss_pred EEECcCCccCC-cCChhHhcCCCCCEEECcCceeccccCh---hHhCCCCCCEEECcCCeeeccCc-hhHhhccCcCEEE
Confidence 55555555443 2333334555555555555555443222 34445555555555555443222 2344445555555
Q ss_pred cCCCccccccCCCCC---chhhhhhccccccc-----CCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCC
Q 016371 289 LNKNNLNRIYYPNND---TIHELVSAHESHEE-----SYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPV 360 (390)
Q Consensus 289 L~~n~l~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l 360 (390)
+++|.+++.. |..+ ..++.+.+..+... .+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+
T Consensus 291 Ls~n~l~~~~-p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 291 LSDNSLSGEI-PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE-IPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CcCCeeccCC-ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc-CChHHhCCCCCcEEECCCCee
Confidence 5555544321 2210 11111111111110 145567777777777777643 234566677777777777776
Q ss_pred CCCCCcchhhhhhhhhcCCceEecCc
Q 016371 361 SDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 361 ~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
. +.+|.. +..+++|+.|+++
T Consensus 369 ~----~~~p~~--~~~~~~L~~L~l~ 388 (968)
T PLN00113 369 T----GEIPEG--LCSSGNLFKLILF 388 (968)
T ss_pred E----eeCChh--HhCcCCCCEEECc
Confidence 5 234444 4556667766654
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=1e-23 Score=196.76 Aligned_cols=228 Identities=26% Similarity=0.308 Sum_probs=121.7
Q ss_pred HHhccccccEeecCCcccCCCCc-chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCC
Q 016371 127 KFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (390)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l 204 (390)
.++.++.|+.|+|+.|.|+.++. .+... .++++|+|++|.|++++. ..|..+.+|.+|.|+.|+++..++ .|.++
T Consensus 144 ~L~~l~alrslDLSrN~is~i~~~sfp~~-~ni~~L~La~N~It~l~~--~~F~~lnsL~tlkLsrNrittLp~r~Fk~L 220 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISEIPKPSFPAK-VNIKKLNLASNRITTLET--GHFDSLNSLLTLKLSRNRITTLPQRSFKRL 220 (873)
T ss_pred HHHhHhhhhhhhhhhchhhcccCCCCCCC-CCceEEeecccccccccc--ccccccchheeeecccCcccccCHHHhhhc
Confidence 34444555555555555544443 22222 445555555555554322 334444455555555555554444 34445
Q ss_pred CCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCc
Q 016371 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
++|+.|+|..|++..... ..++.+++|+.|.|.+|.+...... .+..+..+++|+|+.|+++.... .++..+++|
T Consensus 221 ~~L~~LdLnrN~irive~-ltFqgL~Sl~nlklqrN~I~kL~DG---~Fy~l~kme~l~L~~N~l~~vn~-g~lfgLt~L 295 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIVEG-LTFQGLPSLQNLKLQRNDISKLDDG---AFYGLEKMEHLNLETNRLQAVNE-GWLFGLTSL 295 (873)
T ss_pred chhhhhhccccceeeehh-hhhcCchhhhhhhhhhcCcccccCc---ceeeecccceeecccchhhhhhc-ccccccchh
Confidence 555555555555542111 1124555555555555555554433 45555666666666666665543 455566666
Q ss_pred CeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016371 285 EQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 285 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
+.|+|++|.|..+.+.. -..+++|++|+|++|+|+..+ ...|..+..|++|+|++|.|..
T Consensus 296 ~~L~lS~NaI~rih~d~-----------------WsftqkL~~LdLs~N~i~~l~-~~sf~~L~~Le~LnLs~Nsi~~-- 355 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDS-----------------WSFTQKLKELDLSSNRITRLD-EGSFRVLSQLEELNLSHNSIDH-- 355 (873)
T ss_pred hhhccchhhhheeecch-----------------hhhcccceeEeccccccccCC-hhHHHHHHHhhhhcccccchHH--
Confidence 66666666666654222 244677777777777777764 3566667777777777777653
Q ss_pred CcchhhhhhhhhcCCceEecCc
Q 016371 365 RGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 365 ~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
+... .+..+.+|++||++
T Consensus 356 ---l~e~-af~~lssL~~LdLr 373 (873)
T KOG4194|consen 356 ---LAEG-AFVGLSSLHKLDLR 373 (873)
T ss_pred ---HHhh-HHHHhhhhhhhcCc
Confidence 2221 23445566666654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=3.9e-24 Score=200.99 Aligned_cols=239 Identities=20% Similarity=0.240 Sum_probs=189.3
Q ss_pred EEEEeChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCC
Q 016371 115 SIELVGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLM 194 (390)
Q Consensus 115 ~~~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l 194 (390)
.+...++..+|+.++.+.+|+.|++++|.+..+...+..+ |.|+.+++..|.+.. ..||..+..+..|+.||||+|++
T Consensus 38 kLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~L-p~LRsv~~R~N~LKn-sGiP~diF~l~dLt~lDLShNqL 115 (1255)
T KOG0444|consen 38 KLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDL-PRLRSVIVRDNNLKN-SGIPTDIFRLKDLTILDLSHNQL 115 (1255)
T ss_pred EechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccc-hhhHHHhhhcccccc-CCCCchhcccccceeeecchhhh
Confidence 3555677889999999999999999999998887777765 999999999999876 46888888999999999999999
Q ss_pred CCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchh
Q 016371 195 SKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSE 274 (390)
Q Consensus 195 ~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 274 (390)
...+..+..-+++-+|+|++|+|.. .+..++-++..|-.|+|+.|++...+|+ +..+..|++|+|++|++..+..
T Consensus 116 ~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe~LPPQ----~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 116 REVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLEMLPPQ----IRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred hhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchhhhcCHH----HHHHhhhhhhhcCCChhhHHHH
Confidence 9887788888999999999999874 4455667888999999999999988876 7888999999999999877553
Q ss_pred hhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEE
Q 016371 275 ILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIR 354 (390)
Q Consensus 275 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 354 (390)
..+..+++|+.|.+++.+-+...+|.. +..+.+|..+|+|.|.+...| +.+.++++|+.|+
T Consensus 191 -rQLPsmtsL~vLhms~TqRTl~N~Pts----------------ld~l~NL~dvDlS~N~Lp~vP--ecly~l~~LrrLN 251 (1255)
T KOG0444|consen 191 -RQLPSMTSLSVLHMSNTQRTLDNIPTS----------------LDDLHNLRDVDLSENNLPIVP--ECLYKLRNLRRLN 251 (1255)
T ss_pred -hcCccchhhhhhhcccccchhhcCCCc----------------hhhhhhhhhccccccCCCcch--HHHhhhhhhheec
Confidence 567777888899999987666555766 455667777777777776655 6666777777777
Q ss_pred ccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016371 355 LSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 355 l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
|++|.|++ +... ++.+.+|++||+|
T Consensus 252 LS~N~ite-----L~~~--~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 252 LSGNKITE-----LNMT--EGEWENLETLNLS 276 (1255)
T ss_pred cCcCceee-----eecc--HHHHhhhhhhccc
Confidence 77777664 2222 4555555555555
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=5.7e-23 Score=191.78 Aligned_cols=236 Identities=25% Similarity=0.250 Sum_probs=172.0
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHH-HHhcCCCCCEEEccCCCCCCcc
Q 016371 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGA-FGEQLPALAVLNLSNNLMSKEV 198 (390)
Q Consensus 120 g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~-~~~~l~~L~~L~ls~n~l~~~~ 198 (390)
.+..||.......+|+.|+|.+|.|+.+..+-.+.++.|+.||||.|.|+. ++. .+..=.++++|+|++|+|+...
T Consensus 113 ~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~---i~~~sfp~~~ni~~L~La~N~It~l~ 189 (873)
T KOG4194|consen 113 ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE---IPKPSFPAKVNIKKLNLASNRITTLE 189 (873)
T ss_pred hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc---ccCCCCCCCCCceEEeeccccccccc
Confidence 345666666666777788888888777766333334788888888887774 332 2333357888888888887665
Q ss_pred C-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhh
Q 016371 199 T-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277 (390)
Q Consensus 199 ~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 277 (390)
. .|..+.+|.+|.|+.|+++. .....++.++.|+.|+|..|.+...... .+.++++|+.|.|..|.+..... ..
T Consensus 190 ~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~irive~l---tFqgL~Sl~nlklqrN~I~kL~D-G~ 264 (873)
T KOG4194|consen 190 TGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRIRIVEGL---TFQGLPSLQNLKLQRNDISKLDD-GA 264 (873)
T ss_pred cccccccchheeeecccCcccc-cCHHHhhhcchhhhhhccccceeeehhh---hhcCchhhhhhhhhhcCcccccC-cc
Confidence 4 46677788888888888874 3445557788888888888887765433 57778888888888888776654 55
Q ss_pred cCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC
Q 016371 278 LCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE 357 (390)
Q Consensus 278 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~ 357 (390)
+..+.++++|+|..|+++.+. .. +.-.+++|+.|+||+|.|..+ .++.-..+++|+.|+|+.
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn-~g----------------~lfgLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVN-EG----------------WLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSS 326 (873)
T ss_pred eeeecccceeecccchhhhhh-cc----------------cccccchhhhhccchhhhhee-ecchhhhcccceeEeccc
Confidence 667788888888888888763 11 256789999999999999987 346666799999999999
Q ss_pred CCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 358 NPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 358 n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|.|+.-. +. .+.-|++|++||+|.
T Consensus 327 N~i~~l~----~~--sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 327 NRITRLD----EG--SFRVLSQLEELNLSH 350 (873)
T ss_pred cccccCC----hh--HHHHHHHhhhhcccc
Confidence 9998522 22 267789999999874
No 8
>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain. The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....
Probab=99.83 E-value=2e-20 Score=130.11 Aligned_cols=67 Identities=42% Similarity=0.794 Sum_probs=57.6
Q ss_pred CCCEEEeCCCCeeeEEEEEeeecC-CCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccC
Q 016371 11 LGQRVHSANDARRIGTVKYVGEVQ-GYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNL 78 (390)
Q Consensus 11 ~g~~v~~~~~~~~~~tv~~~g~~~-~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~ 78 (390)
|||||.+.+.....|||||+|+++ ..+|.|+|||||++.|+|||+++|++||+|. +++|.|++++++
T Consensus 1 VG~rV~v~~~~~~~G~vryiG~~~~~~~g~~vGVEld~~~G~~dGt~~G~rYF~c~-~~~G~Fv~~~~v 68 (69)
T PF01302_consen 1 VGDRVRVDDPGGRRGTVRYIGPVPGFKSGIWVGVELDEPRGKNDGTVKGKRYFECP-PNHGIFVRPSKV 68 (69)
T ss_dssp TTSEEEESSTTTEEEEEEEEEE-SSSSSSEEEEEEESSSTSSBSSEETTEESS-SS-TTTEEEEEGGGE
T ss_pred CCCEEEEeeCCCCEEEEEEEeeCCCCCCCEEEEEEEcCCCCCCCcEECCEEEeeeC-CCCEEEecHHHC
Confidence 799999944445779999999999 5668999999999889999999999999997 699999999876
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=5.1e-22 Score=186.86 Aligned_cols=230 Identities=24% Similarity=0.289 Sum_probs=142.7
Q ss_pred hhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCcc-C
Q 016371 121 KDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEV-T 199 (390)
Q Consensus 121 ~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~-~ 199 (390)
+...|..+.+-+++..|+|++|+|..++.+++..+..|-.||||+|.+. .+|+.+..|.+|++|.||+|.+.-.- -
T Consensus 115 L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe---~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 115 LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE---MLPPQIRRLSMLQTLKLSNNPLNHFQLR 191 (1255)
T ss_pred hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh---hcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence 3556777777788888888888888887766665677788888888877 56777788888888888887653221 1
Q ss_pred CCCCCCCcc-------------------------EEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccC
Q 016371 200 GLPQLKSIR-------------------------ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQ 254 (390)
Q Consensus 200 ~~~~l~~L~-------------------------~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 254 (390)
.++.+++|+ .++++.|.++ .+|.++-.+++|+.|+|++|.++..... .+
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp--~vPecly~l~~LrrLNLS~N~iteL~~~----~~ 265 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP--IVPECLYKLRNLRRLNLSGNKITELNMT----EG 265 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC--cchHHHhhhhhhheeccCcCceeeeecc----HH
Confidence 233444444 4444444444 3444445555555555555555544321 33
Q ss_pred CCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCC
Q 016371 255 GFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNM 334 (390)
Q Consensus 255 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~ 334 (390)
...+|++|+|+.|+++..+ ..+.++++|+.|.+.+|+++-.++|.. ++.+..|+++..++|+
T Consensus 266 ~W~~lEtLNlSrNQLt~LP--~avcKL~kL~kLy~n~NkL~FeGiPSG----------------IGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQLTVLP--DAVCKLTKLTKLYANNNKLTFEGIPSG----------------IGKLIQLEVFHAANNK 327 (1255)
T ss_pred HHhhhhhhccccchhccch--HHHhhhHHHHHHHhccCcccccCCccc----------------hhhhhhhHHHHhhccc
Confidence 3345555555555555554 234455555556555555554444554 5566677777777776
Q ss_pred CCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016371 335 IEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 335 i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
+.-.| +.++.|++|+.|.|++|.+.. +|.. |.-|+.|++||+-
T Consensus 328 LElVP--EglcRC~kL~kL~L~~NrLiT-----LPea--IHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 328 LELVP--EGLCRCVKLQKLKLDHNRLIT-----LPEA--IHLLPDLKVLDLR 370 (1255)
T ss_pred cccCc--hhhhhhHHHHHhcccccceee-----chhh--hhhcCCcceeecc
Confidence 66554 666777777777777777653 5655 6666777777654
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=4.7e-18 Score=158.07 Aligned_cols=251 Identities=22% Similarity=0.219 Sum_probs=172.0
Q ss_pred eChhHHHHHHhccccccEeecCCcccCCCCc-------chhhhcCcccEEECCCCcCCChHHHHHHHhcCC---CCCEEE
Q 016371 119 VGKDKIQDKFSKFEELTSAALPYLGVSSPGA-------NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLP---ALAVLN 188 (390)
Q Consensus 119 ~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~-------~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~---~L~~L~ 188 (390)
.+...+++.+...+.++.++++++.+..... .+.. +++|+.|++++|.+.. ..+..+..+. +|++|+
T Consensus 38 ~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~--~~~~~~~~l~~~~~L~~L~ 114 (319)
T cd00116 38 EAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GCGLQELDLSDNALGP--DGCGVLESLLRSSSLQELK 114 (319)
T ss_pred HHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-cCceeEEEccCCCCCh--hHHHHHHHHhccCcccEEE
Confidence 3446678888888999999999988874221 2223 5799999999999875 3344444444 499999
Q ss_pred ccCCCCCCccC-----CCCCC-CCccEEEeecccCCHHH---HHHHHhcCCcccEEeccCCCccccCC-CCCCccCCCCC
Q 016371 189 LSNNLMSKEVT-----GLPQL-KSIRILVLNCTGVNWMQ---VEILKHSLPALEELHLMGNSISEITP-VSSPIVQGFDN 258 (390)
Q Consensus 189 ls~n~l~~~~~-----~~~~l-~~L~~L~L~~~~l~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~ 258 (390)
+++|++..... .+..+ ++|+.|++++|.+++.. +...+..++.|++|++++|.+++... .+...+..+++
T Consensus 115 ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~ 194 (319)
T cd00116 115 LNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCN 194 (319)
T ss_pred eeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCC
Confidence 99998874211 24456 89999999999988433 34455677789999999999875321 11112445579
Q ss_pred ccEEEcCCCCCCCchhh---hhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCC
Q 016371 259 LQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMI 335 (390)
Q Consensus 259 L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i 335 (390)
|++|++++|.+++.... ..+..+++|++|++++|.+++.........+ ....+.|++|++++|.|
T Consensus 195 L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~------------~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL------------LSPNISLLTLSLSCNDI 262 (319)
T ss_pred CCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH------------hccCCCceEEEccCCCC
Confidence 99999999998754321 3456789999999999998874322111000 12357999999999999
Q ss_pred CCch---hhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhc-CCceEecCc
Q 016371 336 EDLA---SIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARL-GKIKILNGS 386 (390)
Q Consensus 336 ~~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l-~~L~~Ln~s 386 (390)
++.. ....+..+++|++|++++|++.+......+.. +-.. +.|+.|++.
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~--~~~~~~~~~~~~~~ 315 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES--LLEPGNELESLWVK 315 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH--HhhcCCchhhcccC
Confidence 8432 22556678899999999999986432223322 3344 677777764
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=3.2e-18 Score=159.17 Aligned_cols=248 Identities=24% Similarity=0.199 Sum_probs=176.5
Q ss_pred HHHHhccccccEeecCCcccCCCCc----chhhhcCcccEEECCCCcCC----ChHHHHHHHhcCCCCCEEEccCCCCCC
Q 016371 125 QDKFSKFEELTSAALPYLGVSSPGA----NIGTIVTNLKELDLTGNLLS----DWKDIGAFGEQLPALAVLNLSNNLMSK 196 (390)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~----~~~~~~~~L~~L~Ls~n~l~----~~~~i~~~~~~l~~L~~L~ls~n~l~~ 196 (390)
...+..+..|+.++++++.++.... ......++++.|+++++.+. .+..++..+..+++|+.|++++|.+..
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 4455666779999999999866433 22333477999999999877 245667788889999999999999875
Q ss_pred ccC-CCCCC---CCccEEEeecccCCHHHHHH---HHhcC-CcccEEeccCCCccccCC-CCCCccCCCCCccEEEcCCC
Q 016371 197 EVT-GLPQL---KSIRILVLNCTGVNWMQVEI---LKHSL-PALEELHLMGNSISEITP-VSSPIVQGFDNLQLLNLEDN 267 (390)
Q Consensus 197 ~~~-~~~~l---~~L~~L~L~~~~l~~~~~~~---~~~~l-~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~L~~n 267 (390)
..+ .+..+ ++|++|++++|.++...... .+..+ ++|++|++++|.+++... .+...+..++.|++|++++|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 433 23333 55999999999988544333 34566 899999999999884211 11224566789999999999
Q ss_pred CCCCchh--h-hhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhc
Q 016371 268 CIAEWSE--I-LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSL 344 (390)
Q Consensus 268 ~l~~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l 344 (390)
.+++... + ..+..+++|+.|++++|.+++....... ..+..+++|++|++++|.++++......
T Consensus 176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-------------~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA-------------ETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH-------------HHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 9985321 1 2355668999999999999865311110 0145679999999999999975332211
Q ss_pred c----CCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 345 D----SFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 345 ~----~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
. ..+.|++|++++|.+++.....++.. +..+++|+.|+++.
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~--~~~~~~L~~l~l~~ 287 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEV--LAEKESLLELDLRG 287 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHH--HhcCCCccEEECCC
Confidence 2 24899999999999986443344444 67778999998875
No 12
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.9e-18 Score=138.25 Aligned_cols=73 Identities=44% Similarity=0.801 Sum_probs=66.0
Q ss_pred CCCCCCE--EEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016371 8 SYKLGQR--VHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 8 ~~~~g~~--v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~~ 81 (390)
++.||.| |.+.|...+.|||||+|+.++.+|.|+||++|+|.|||||+++|++||.|.+ ++|.|++|..+..|
T Consensus 148 ~i~vG~rCeVtv~G~~~Rrg~vrYvG~~~~k~G~wiGVeydEplGKnDGsv~G~ryF~c~p-~yGgfVrP~~V~Vg 222 (234)
T KOG3206|consen 148 TIAVGRRCEVTVPGQAPRRGTVRYVGPLEFKPGYWIGVEYDEPLGKNDGSVNGKRYFECAP-KYGGFVRPRAVTVG 222 (234)
T ss_pred ccccCCeeEEecCCCCCcceEEEEecccCCCCceEEEEecCCccccCCCcccceEeeecCC-ccCCccccceeeec
Confidence 4789998 5555665567999999999999999999999999999999999999998887 99999999999887
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=1.1e-17 Score=167.88 Aligned_cols=223 Identities=20% Similarity=0.237 Sum_probs=101.1
Q ss_pred eEEEEeChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCC
Q 016371 114 VSIELVGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNL 193 (390)
Q Consensus 114 ~~~~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~ 193 (390)
+.+...++..+|..+. ++|+.|++.+|.++.++. .+++|++|++++|.++.+ |. ..++|+.|++++|.
T Consensus 206 LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsL---P~---lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 206 LNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSL---PV---LPPGLLELSIFSNP 273 (788)
T ss_pred EEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcc---cC---cccccceeeccCCc
Confidence 3344445556665443 367777777777776543 236777777777777642 22 12455555555555
Q ss_pred CCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccC--------------CCCCc
Q 016371 194 MSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQ--------------GFDNL 259 (390)
Q Consensus 194 l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--------------~l~~L 259 (390)
+...+.. ..+|+.|++++|+++. ++. ..++|+.|++++|.++.++.. +..+. ...+|
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~Lt~--LP~---~p~~L~~LdLS~N~L~~Lp~l-p~~L~~L~Ls~N~L~~LP~lp~~L 344 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQLTS--LPV---LPPGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLTSLPTLPSGL 344 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCcccc--ccc---cccccceeECCCCccccCCCC-cccccccccccCcccccccccccc
Confidence 5432211 1234444444444431 221 123444444444444433210 00000 01245
Q ss_pred cEEEcCCCCCCCchhhh--------------hcC-CCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCC-CC
Q 016371 260 QLLNLEDNCIAEWSEIL--------------KLC-QIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLP-FQ 323 (390)
Q Consensus 260 ~~L~L~~n~l~~~~~~~--------------~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 323 (390)
+.|+|++|.|+..+... .+. ..++|+.|+|++|.|+.+ |.....++.+..+.|.+..+.. +.
T Consensus 345 q~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~L--P~l~s~L~~LdLS~N~LssIP~l~~ 422 (788)
T PRK15387 345 QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSL--PVLPSELKELMVSGNRLTSLPMLPS 422 (788)
T ss_pred ceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCC--CCcccCCCEEEccCCcCCCCCcchh
Confidence 55556555555433210 000 012344455555554443 3222233333333333333221 12
Q ss_pred CCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016371 324 NLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 324 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
+|+.|++++|+|+.+| +.+..+++|+.|+|++|+|+
T Consensus 423 ~L~~L~Ls~NqLt~LP--~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 423 GLLSLSVYRNQLTRLP--ESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhhccCcccccC--hHHhhccCCCeEECCCCCCC
Confidence 4455555555555433 34555556666666666665
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=9.5e-21 Score=169.86 Aligned_cols=89 Identities=22% Similarity=0.252 Sum_probs=37.7
Q ss_pred HHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCC
Q 016371 124 IQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQ 203 (390)
Q Consensus 124 l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 203 (390)
+|+.++.+..++.++.++|.++..++++... ++|+.|+++.|.+. ++++.++.+..|+.|+..+|+++..++++..
T Consensus 83 lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~-~~l~~l~~s~n~~~---el~~~i~~~~~l~dl~~~~N~i~slp~~~~~ 158 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHNKLSELPEQIGSL-ISLVKLDCSSNELK---ELPDSIGRLLDLEDLDATNNQISSLPEDMVN 158 (565)
T ss_pred CCHHHHHHHHHHHhhcccchHhhccHHHhhh-hhhhhhhcccccee---ecCchHHHHhhhhhhhccccccccCchHHHH
Confidence 3444444444444444444444444433333 44444444444443 2333344444444444444444443333333
Q ss_pred CCCccEEEeeccc
Q 016371 204 LKSIRILVLNCTG 216 (390)
Q Consensus 204 l~~L~~L~L~~~~ 216 (390)
+.+|..|++.+|.
T Consensus 159 ~~~l~~l~~~~n~ 171 (565)
T KOG0472|consen 159 LSKLSKLDLEGNK 171 (565)
T ss_pred HHHHHHhhccccc
Confidence 3333333333333
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=7.5e-20 Score=164.17 Aligned_cols=241 Identities=22% Similarity=0.290 Sum_probs=188.3
Q ss_pred hhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC
Q 016371 121 KDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG 200 (390)
Q Consensus 121 ~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~ 200 (390)
...+.+.+.++..|..+++.+|.+...++++... ..++.|+.++|.++ .+|+.+..+++|..|+++.|.+...+++
T Consensus 57 l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l-~~l~~l~vs~n~ls---~lp~~i~s~~~l~~l~~s~n~~~el~~~ 132 (565)
T KOG0472|consen 57 LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGEL-EALKSLNVSHNKLS---ELPEQIGSLISLVKLDCSSNELKELPDS 132 (565)
T ss_pred hhhccHhhhcccceeEEEeccchhhhCCHHHHHH-HHHHHhhcccchHh---hccHHHhhhhhhhhhhccccceeecCch
Confidence 4566678889999999999999999999988886 89999999999988 7899999999999999999999988889
Q ss_pred CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCC
Q 016371 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (390)
Q Consensus 201 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 280 (390)
++.+..|+.|+..+|+++ .++..+..+.+|..|++.+|.++..++. .+ ++++|++||...|-++..++ .++.
T Consensus 133 i~~~~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~l~~~---~i-~m~~L~~ld~~~N~L~tlP~--~lg~ 204 (565)
T KOG0472|consen 133 IGRLLDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKALPEN---HI-AMKRLKHLDCNSNLLETLPP--ELGG 204 (565)
T ss_pred HHHHhhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhhCCHH---HH-HHHHHHhcccchhhhhcCCh--hhcc
Confidence 999999999999999987 4555556777888888888888777654 23 37788888888887777763 6777
Q ss_pred CCCcCeEecCCCccccccCCCCC--chhhhhhccccccc-----CCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEE
Q 016371 281 IRSLEQLYLNKNNLNRIYYPNND--TIHELVSAHESHEE-----SYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDI 353 (390)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L 353 (390)
+.+|.-|+|.+|+|..+ |+.. ..+..+..++|... -...+++|.+|||.+|+++..| +.+..+.+|++|
T Consensus 205 l~~L~~LyL~~Nki~~l--Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P--de~clLrsL~rL 280 (565)
T KOG0472|consen 205 LESLELLYLRRNKIRFL--PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP--DEICLLRSLERL 280 (565)
T ss_pred hhhhHHHHhhhcccccC--CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc--hHHHHhhhhhhh
Confidence 77888888888887776 4321 22223333333211 1346788999999999999877 677788889999
Q ss_pred EccCCCCCCCCCcchhhhhhhhhcCCceEecC
Q 016371 354 RLSENPVSDPGRGGISRFAIIARLGKIKILNG 385 (390)
Q Consensus 354 ~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 385 (390)
|+++|.|+. +|.. ++++ +|+.|-+
T Consensus 281 DlSNN~is~-----Lp~s--Lgnl-hL~~L~l 304 (565)
T KOG0472|consen 281 DLSNNDISS-----LPYS--LGNL-HLKFLAL 304 (565)
T ss_pred cccCCcccc-----CCcc--cccc-eeeehhh
Confidence 999999884 6655 7777 7776643
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=6.5e-17 Score=162.45 Aligned_cols=196 Identities=16% Similarity=0.132 Sum_probs=120.1
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhc--------------CCCCC
Q 016371 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQ--------------LPALA 185 (390)
Q Consensus 120 g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~--------------l~~L~ 185 (390)
.+.++|. ..++|++|++++|.++.++. ..++|+.|++++|.++.+..+|..+.. .++|+
T Consensus 233 ~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~ 305 (788)
T PRK15387 233 NLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQ 305 (788)
T ss_pred cCCCCCC---CCCCCcEEEecCCccCcccC----cccccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccc
Confidence 3444543 35789999999999987653 235677777777766643222211111 24566
Q ss_pred EEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCcc------------
Q 016371 186 VLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIV------------ 253 (390)
Q Consensus 186 ~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~------------ 253 (390)
.|++++|.+...+. + ..+|+.|++++|.++. ++.+ ..+|++|+|++|+++.++.. +..+
T Consensus 306 ~LdLS~N~L~~Lp~-l--p~~L~~L~Ls~N~L~~--LP~l---p~~Lq~LdLS~N~Ls~LP~l-p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 306 ELSVSDNQLASLPA-L--PSELCKLWAYNNQLTS--LPTL---PSGLQELSVSDNQLASLPTL-PSELYKLWAYNNRLTS 376 (788)
T ss_pred eeECCCCccccCCC-C--cccccccccccCcccc--cccc---ccccceEecCCCccCCCCCC-Ccccceehhhcccccc
Confidence 66776666655322 1 1234444444444431 2211 13567777777776654321 1011
Q ss_pred --CCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccC----CCCCCCCCE
Q 016371 254 --QGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEES----YLPFQNLCC 327 (390)
Q Consensus 254 --~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~~ 327 (390)
....+|+.|++++|.++..+. ..++|+.|++++|.|+.+ |.....+..+....|.... +..+++|+.
T Consensus 377 LP~l~~~L~~LdLs~N~Lt~LP~-----l~s~L~~LdLS~N~LssI--P~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~ 449 (788)
T PRK15387 377 LPALPSGLKELIVSGNRLTSLPV-----LPSELKELMVSGNRLTSL--PMLPSGLLSLSVYRNQLTRLPESLIHLSSETT 449 (788)
T ss_pred CcccccccceEEecCCcccCCCC-----cccCCCEEEccCCcCCCC--CcchhhhhhhhhccCcccccChHHhhccCCCe
Confidence 012468888999998887653 136899999999999986 6555556666666665543 456899999
Q ss_pred EeCCCCCCCCc
Q 016371 328 LLLGNNMIEDL 338 (390)
Q Consensus 328 L~L~~N~i~~~ 338 (390)
|+|++|+|++.
T Consensus 450 LdLs~N~Ls~~ 460 (788)
T PRK15387 450 VNLEGNPLSER 460 (788)
T ss_pred EECCCCCCCch
Confidence 99999999974
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.68 E-value=2.5e-17 Score=136.88 Aligned_cols=135 Identities=34% Similarity=0.486 Sum_probs=66.3
Q ss_pred cCCcccEEeccCCCccccCCCCCCccC-CCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchh
Q 016371 228 SLPALEELHLMGNSISEITPVSSPIVQ-GFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIH 306 (390)
Q Consensus 228 ~l~~L~~L~L~~n~l~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 306 (390)
+..++++|+|.+|.++.+.. ++ .+.+|+.|+|++|.++... .+..+++|++|++++|.|+.+. ..+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls~N~I~~l~---~l~~L~~L~~L~L~~N~I~~i~--~~l--- 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLSNNQITKLE---GLPGLPRLKTLDLSNNRISSIS--EGL--- 83 (175)
T ss_dssp -------------------S-------TT-TT--EEE-TTS--S--T---T----TT--EEE--SS---S-C--HHH---
T ss_pred cccccccccccccccccccc-----hhhhhcCCCEEECCCCCCcccc---CccChhhhhhcccCCCCCCccc--cch---
Confidence 44568999999999987642 34 4688999999999999865 4677899999999999999872 210
Q ss_pred hhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016371 307 ELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
...+++|++|++++|+|.++..+..++.+|+|+.|+|.+||+++. ..-+.+++..+|+|+.||+.
T Consensus 84 ------------~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~---~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 ------------DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK---KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp ------------HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS---TTHHHHHHHH-TT-SEETTE
T ss_pred ------------HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch---hhHHHHHHHHcChhheeCCE
Confidence 135799999999999999988888899999999999999999863 46788899999999999999
Q ss_pred ccCC
Q 016371 387 EVNS 390 (390)
Q Consensus 387 ~i~~ 390 (390)
.|+.
T Consensus 149 ~V~~ 152 (175)
T PF14580_consen 149 DVTE 152 (175)
T ss_dssp ETTS
T ss_pred EccH
Confidence 9874
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=3.9e-18 Score=167.37 Aligned_cols=214 Identities=24% Similarity=0.288 Sum_probs=126.3
Q ss_pred ccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEee
Q 016371 134 LTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLN 213 (390)
Q Consensus 134 L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~ 213 (390)
|++++++++.++..+..+. .|++|+.++...|.++ .+|..+....+|+.|.+..|.+...++...++.+|++|+|.
T Consensus 243 l~~~dis~n~l~~lp~wi~-~~~nle~l~~n~N~l~---~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 243 LQYLDISHNNLSNLPEWIG-ACANLEALNANHNRLV---ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ceeeecchhhhhcchHHHH-hcccceEecccchhHH---hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 4444444444444442222 2344444444444443 34444444444444444444444444455568888999998
Q ss_pred cccCCHHHHHHHH-------------------------hcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCC
Q 016371 214 CTGVNWMQVEILK-------------------------HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNC 268 (390)
Q Consensus 214 ~~~l~~~~~~~~~-------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~ 268 (390)
.|.+... +..++ ..++.|+.|++.+|.+++.-.+ .+.+++.|+.|+|++|+
T Consensus 319 ~N~L~~l-p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p---~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 319 SNNLPSL-PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP---VLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred hcccccc-chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh---hhccccceeeeeecccc
Confidence 8876521 00000 1123477777888888765332 57788999999999999
Q ss_pred CCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhh---hhcccccc---cCCCCCCCCCEEeCCCCCCCCchhhh
Q 016371 269 IAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHEL---VSAHESHE---ESYLPFQNLCCLLLGNNMIEDLASID 342 (390)
Q Consensus 269 l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~L~~L~L~~N~i~~~~~~~ 342 (390)
+..++. ..+.++..|++|+||+|+++.+ |.....+.. +....|.. ..+..++.|+.+|+|.|+++....+.
T Consensus 395 L~~fpa-s~~~kle~LeeL~LSGNkL~~L--p~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 395 LNSFPA-SKLRKLEELEELNLSGNKLTTL--PDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred cccCCH-HHHhchHHhHHHhcccchhhhh--hHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhh
Confidence 998886 6788899999999999999988 555333322 22222221 23445666777777777776653333
Q ss_pred hccCCCCCcEEEccCCC
Q 016371 343 SLDSFPKLMDIRLSENP 359 (390)
Q Consensus 343 ~l~~l~~L~~L~l~~n~ 359 (390)
.+.+ |+|++||++||.
T Consensus 472 ~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 472 ALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hCCC-cccceeeccCCc
Confidence 3332 667777777776
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.64 E-value=1.4e-17 Score=149.34 Aligned_cols=241 Identities=22% Similarity=0.209 Sum_probs=149.1
Q ss_pred eEEEEeChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccC-C
Q 016371 114 VSIELVGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSN-N 192 (390)
Q Consensus 114 ~~~~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~-n 192 (390)
+.....|+..+|..+. +...++.|..|+|+.+++..+..+++|+.||||+|.|+.+ -|+.|..+++|..|-+.+ |
T Consensus 51 VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I--~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI--APDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhc--ChHhhhhhHhhhHHHhhcCC
Confidence 3444556666664442 3456788888999888884444458999999999988863 368888888877776665 8
Q ss_pred CCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCC-
Q 016371 193 LMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIA- 270 (390)
Q Consensus 193 ~l~~~~~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~- 270 (390)
+|+..+. .|.++..|+.|.++-|++.. .....+..+++|..|.+-+|.+..+... .+..+..++++.+..|.+.
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~---tf~~l~~i~tlhlA~np~ic 202 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKG---TFQGLAAIKTLHLAQNPFIC 202 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhhhhccc---cccchhccchHhhhcCcccc
Confidence 8887665 57788888888888888765 4555667788888888888777655432 3444444455444444311
Q ss_pred ------------------------------------------------------------CchhhhhcCCCCCcCeEecC
Q 016371 271 ------------------------------------------------------------EWSEILKLCQIRSLEQLYLN 290 (390)
Q Consensus 271 ------------------------------------------------------------~~~~~~~l~~l~~L~~L~L~ 290 (390)
..-+...+..+++|++|+|+
T Consensus 203 dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 203 DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 01122345667778888888
Q ss_pred CCccccccCCCCC---chhhhhhccccccc-----CCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016371 291 KNNLNRIYYPNND---TIHELVSAHESHEE-----SYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 291 ~n~l~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+|+|+.+. +..+ ..++.+.+..|... -|..+..|+.|+|.+|+|+.+ .+..|..+..|.+|++-.||+.-
T Consensus 283 nN~i~~i~-~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~-~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 283 NNKITRIE-DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV-APGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred CCccchhh-hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE-ecccccccceeeeeehccCcccC
Confidence 88877764 2221 11122222222211 134456666666666666654 23455556666666666666654
Q ss_pred CC
Q 016371 363 PG 364 (390)
Q Consensus 363 ~~ 364 (390)
++
T Consensus 361 nC 362 (498)
T KOG4237|consen 361 NC 362 (498)
T ss_pred cc
Confidence 33
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=5.2e-18 Score=166.50 Aligned_cols=209 Identities=25% Similarity=0.307 Sum_probs=111.1
Q ss_pred HHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHh-c----------------------
Q 016371 124 IQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGE-Q---------------------- 180 (390)
Q Consensus 124 l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~-~---------------------- 180 (390)
+|..+....+|+.+++..|.+..+++.... +..|++|+|..|.+..+ |+.+. -
T Consensus 279 lp~ri~~~~~L~~l~~~~nel~yip~~le~-~~sL~tLdL~~N~L~~l---p~~~l~v~~~~l~~ln~s~n~l~~lp~~~ 354 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYNELEYIPPFLEG-LKSLRTLDLQSNNLPSL---PDNFLAVLNASLNTLNVSSNKLSTLPSYE 354 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhhhhhhCCCcccc-cceeeeeeehhcccccc---chHHHhhhhHHHHHHhhhhcccccccccc
Confidence 444444444444444444444444443222 26677777777766642 22111 1
Q ss_pred ---CCCCCEEEccCCCCCCcc-CCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCC
Q 016371 181 ---LPALAVLNLSNNLMSKEV-TGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGF 256 (390)
Q Consensus 181 ---l~~L~~L~ls~n~l~~~~-~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 256 (390)
++.|+.|.+.+|.++... |.+..+.+|+.|+|+.|++.. .....+..++.|++|+|++|.++.++. .+..+
T Consensus 355 e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGNkL~~Lp~----tva~~ 429 (1081)
T KOG0618|consen 355 ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGNKLTTLPD----TVANL 429 (1081)
T ss_pred chhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccchhhhhhH----HHHhh
Confidence 112333333333333221 233344555555555554442 222333445555555555555554432 24445
Q ss_pred CCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCC
Q 016371 257 DNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIE 336 (390)
Q Consensus 257 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~ 336 (390)
..|++|...+|.+..+| .+..++.|+.+|++.|+|+.+..|.. .+-++|++|||++|.-.
T Consensus 430 ~~L~tL~ahsN~l~~fP---e~~~l~qL~~lDlS~N~L~~~~l~~~-----------------~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFP---ELAQLPQLKVLDLSCNNLSEVTLPEA-----------------LPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhHHHhhcCCceeech---hhhhcCcceEEecccchhhhhhhhhh-----------------CCCcccceeeccCCccc
Confidence 55555555555555544 35677888888888888887765553 23389999999999543
Q ss_pred CchhhhhccCCCCCcEEEccCCCCCC
Q 016371 337 DLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 337 ~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
... -..|..+.++...++.-++..+
T Consensus 490 ~~d-~~~l~~l~~l~~~~i~~~~~~d 514 (1081)
T KOG0618|consen 490 VFD-HKTLKVLKSLSQMDITLNNTPD 514 (1081)
T ss_pred ccc-hhhhHHhhhhhheecccCCCCc
Confidence 332 2456667777777777665443
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.64 E-value=4.3e-15 Score=159.30 Aligned_cols=250 Identities=17% Similarity=0.081 Sum_probs=161.4
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC
Q 016371 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (390)
Q Consensus 120 g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~ 199 (390)
.+.+++..+..+++|+.++|+++......+.+.. +++|++|+|++|.... .+|..+..+++|+.|++++|..-...|
T Consensus 622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~-l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSM-ATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred cccccccccccCCCCCEEECCCCCCcCcCCcccc-CCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCCCCcCccC
Confidence 3456666778899999999988754333334444 5999999999986544 788889999999999999875333344
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCC--------------------------Ccc
Q 016371 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSS--------------------------PIV 253 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------------------------~~~ 253 (390)
....+++|+.|++++|.... .++. ...+|++|++.+|.+..++.... ...
T Consensus 699 ~~i~l~sL~~L~Lsgc~~L~-~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 699 TGINLKSLYRLNLSGCSRLK-SFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred CcCCCCCCCEEeCCCCCCcc-cccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhh
Confidence 33378889999998885321 2222 24578888888887665442100 000
Q ss_pred CCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCc-cccccCCCC--Cchhhhhhcccc-cccCC-CCCCCCCEE
Q 016371 254 QGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN-LNRIYYPNN--DTIHELVSAHES-HEESY-LPFQNLCCL 328 (390)
Q Consensus 254 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~--~~~~~~~~~~~~-~~~~~-~~~~~L~~L 328 (390)
...++|+.|+|++|......+ ..++.+++|+.|++++|. +..+ |.. +..++.+.++.. ....+ ...++|+.|
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~~L--P~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L 851 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIENCINLETL--PTGINLESLESLDLSGCSRLRTFPDISTNISDL 851 (1153)
T ss_pred hccccchheeCCCCCCccccC-hhhhCCCCCCEEECCCCCCcCee--CCCCCccccCEEECCCCCccccccccccccCEe
Confidence 113577888888886443222 457788999999998874 5554 433 222333333221 11111 223678899
Q ss_pred eCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 329 LLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 329 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+|++|.|+.+| ..+..+++|+.|+|++|+-.. .++.. +.++++|+.|+++.
T Consensus 852 ~Ls~n~i~~iP--~si~~l~~L~~L~L~~C~~L~----~l~~~--~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 852 NLSRTGIEEVP--WWIEKFSNLSFLDMNGCNNLQ----RVSLN--ISKLKHLETVDFSD 902 (1153)
T ss_pred ECCCCCCccCh--HHHhcCCCCCEEECCCCCCcC----ccCcc--cccccCCCeeecCC
Confidence 99999888876 568889999999999875432 23433 55667777766554
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=5.8e-16 Score=156.39 Aligned_cols=233 Identities=19% Similarity=0.194 Sum_probs=116.8
Q ss_pred eChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCcc
Q 016371 119 VGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEV 198 (390)
Q Consensus 119 ~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~ 198 (390)
.++..+|..+. ++|+.|++++|.++..+..+ +++|++|++++|.++. +|..+. ++|+.|++++|.+...+
T Consensus 188 ~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N~Lts---LP~~l~--~~L~~L~Ls~N~L~~LP 257 (754)
T PRK15370 188 LGLTTIPACIP--EQITTLILDNNELKSLPENL---QGNIKTLYANSNQLTS---IPATLP--DTIQEMELSINRITELP 257 (754)
T ss_pred CCcCcCCcccc--cCCcEEEecCCCCCcCChhh---ccCCCEEECCCCcccc---CChhhh--ccccEEECcCCccCcCC
Confidence 34444554332 35777777777777665433 2567777777777663 343322 35666777776666443
Q ss_pred CCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhc
Q 016371 199 TGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL 278 (390)
Q Consensus 199 ~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l 278 (390)
..+. .+|+.|++++|.++ .++..+ .++|+.|++++|.++.++.. + .++|+.|++++|.++..+. .+
T Consensus 258 ~~l~--s~L~~L~Ls~N~L~--~LP~~l--~~sL~~L~Ls~N~Lt~LP~~----l--p~sL~~L~Ls~N~Lt~LP~--~l 323 (754)
T PRK15370 258 ERLP--SALQSLDLFHNKIS--CLPENL--PEELRYLSVYDNSIRTLPAH----L--PSGITHLNVQSNSLTALPE--TL 323 (754)
T ss_pred hhHh--CCCCEEECcCCccC--cccccc--CCCCcEEECCCCccccCccc----c--hhhHHHHHhcCCccccCCc--cc
Confidence 3332 35666666666665 233211 24566666666666654322 1 1244555555555544332 11
Q ss_pred CCCCCcCeEecCCCccccccCCCCC-chhhhhhcccccccCC--CCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEc
Q 016371 279 CQIRSLEQLYLNKNNLNRIYYPNND-TIHELVSAHESHEESY--LPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRL 355 (390)
Q Consensus 279 ~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 355 (390)
.++|+.|++++|.++.+ |..+ ..++.+.++.|.+..+ .-.++|++|+|++|+|+.+| ..+. +.|+.|++
T Consensus 324 --~~sL~~L~Ls~N~Lt~L--P~~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP--~~l~--~sL~~LdL 395 (754)
T PRK15370 324 --PPGLKTLEAGENALTSL--PASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLP--ENLP--AALQIMQA 395 (754)
T ss_pred --cccceeccccCCccccC--ChhhcCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCC--HhHH--HHHHHHhh
Confidence 13445555555554443 2110 1111122222211110 01256777777777777654 2232 25777777
Q ss_pred cCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016371 356 SENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 356 ~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
++|.|.... ..++.. .+.++++..|++.
T Consensus 396 s~N~L~~LP-~sl~~~--~~~~~~l~~L~L~ 423 (754)
T PRK15370 396 SRNNLVRLP-ESLPHF--RGEGPQPTRIIVE 423 (754)
T ss_pred ccCCcccCc-hhHHHH--hhcCCCccEEEee
Confidence 777776311 223332 4455777777654
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=5.6e-18 Score=135.62 Aligned_cols=163 Identities=23% Similarity=0.319 Sum_probs=146.4
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016371 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+-++.+++.|.|++|.++..++.++.+ .+|+.|++++|++. ++|..++.+++|+.|+++-|++...+-+|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l-~nlevln~~nnqie---~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAEL-KNLEVLNLSNNQIE---ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHh-hhhhhhhcccchhh---hcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 346778888999999999999999886 99999999999998 68899999999999999999998777799999999
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeE
Q 016371 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (390)
Q Consensus 208 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 287 (390)
+.|+|..|.+....++..+..+..|+.|+|++|.+.-+++. ++.+.+|+.|.+.+|.+-+.+ ..++.+..|++|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d----vg~lt~lqil~lrdndll~lp--keig~lt~lrel 178 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD----VGKLTNLQILSLRDNDLLSLP--KEIGDLTRLREL 178 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh----hhhhcceeEEeeccCchhhCc--HHHHHHHHHHHH
Confidence 99999999998777777777888999999999999887765 899999999999999998877 468899999999
Q ss_pred ecCCCccccccCCCC
Q 016371 288 YLNKNNLNRIYYPNN 302 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~ 302 (390)
++.+|+++.+ |..
T Consensus 179 hiqgnrl~vl--ppe 191 (264)
T KOG0617|consen 179 HIQGNRLTVL--PPE 191 (264)
T ss_pred hcccceeeec--Chh
Confidence 9999999988 544
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=8.5e-16 Score=155.21 Aligned_cols=214 Identities=16% Similarity=0.195 Sum_probs=126.6
Q ss_pred hhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC
Q 016371 121 KDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG 200 (390)
Q Consensus 121 ~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~ 200 (390)
+..+|..+. .+|+.|++++|.++.++..+ .++|+.|+|++|.+.. +|..+. .+|+.|++++|++...+..
T Consensus 211 LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~---LP~~l~--s~L~~L~Ls~N~L~~LP~~ 280 (754)
T PRK15370 211 LKSLPENLQ--GNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITE---LPERLP--SALQSLDLFHNKISCLPEN 280 (754)
T ss_pred CCcCChhhc--cCCCEEECCCCccccCChhh---hccccEEECcCCccCc---CChhHh--CCCCEEECcCCccCccccc
Confidence 445555443 57889999999888765433 2578888888888874 454442 4788888888888765444
Q ss_pred CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCC
Q 016371 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (390)
Q Consensus 201 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 280 (390)
+. ++|+.|++++|.++. ++..+ .++|+.|++++|.++.++.. + .++|+.|++++|.++.++. .+
T Consensus 281 l~--~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~N~Lt~LP~~----l--~~sL~~L~Ls~N~Lt~LP~--~l-- 344 (754)
T PRK15370 281 LP--EELRYLSVYDNSIRT--LPAHL--PSGITHLNVQSNSLTALPET----L--PPGLKTLEAGENALTSLPA--SL-- 344 (754)
T ss_pred cC--CCCcEEECCCCcccc--Ccccc--hhhHHHHHhcCCccccCCcc----c--cccceeccccCCccccCCh--hh--
Confidence 43 478888888887763 22211 13456666666666544321 1 1345555555555544332 11
Q ss_pred CCCcCeEecCCCccccccCCCC-CchhhhhhcccccccCCC--CCCCCCEEeCCCCCCCCchh--hhhccCCCCCcEEEc
Q 016371 281 IRSLEQLYLNKNNLNRIYYPNN-DTIHELVSAHESHEESYL--PFQNLCCLLLGNNMIEDLAS--IDSLDSFPKLMDIRL 355 (390)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~L~~L~L~~N~i~~~~~--~~~l~~l~~L~~L~l 355 (390)
.++|+.|+|++|+|+.+ |.. ...++.+.+..|.+..+. -...|+.|++++|+|+.+|. +..+..++.+..|++
T Consensus 345 ~~sL~~L~Ls~N~L~~L--P~~lp~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L 422 (754)
T PRK15370 345 PPELQVLDVSKNQITVL--PETLPPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIV 422 (754)
T ss_pred cCcccEEECCCCCCCcC--ChhhcCCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEe
Confidence 13455555555554433 211 112233333333332221 12479999999999998752 123345689999999
Q ss_pred cCCCCCC
Q 016371 356 SENPVSD 362 (390)
Q Consensus 356 ~~n~l~~ 362 (390)
.+||++.
T Consensus 423 ~~Npls~ 429 (754)
T PRK15370 423 EYNPFSE 429 (754)
T ss_pred eCCCccH
Confidence 9999984
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=1.5e-17 Score=133.17 Aligned_cols=183 Identities=27% Similarity=0.300 Sum_probs=151.3
Q ss_pred chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcC
Q 016371 150 NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSL 229 (390)
Q Consensus 150 ~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l 229 (390)
.++. +.+++.|-||+|.++ .+|+.+..+.+|+.|++++|++...+..++.+++|+.|+++.|++. .++.-++.+
T Consensus 28 gLf~-~s~ITrLtLSHNKl~---~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~ 101 (264)
T KOG0617|consen 28 GLFN-MSNITRLTLSHNKLT---VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSF 101 (264)
T ss_pred cccc-hhhhhhhhcccCcee---ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCC
Confidence 3444 378889999999998 5788899999999999999999988889999999999999999887 677788999
Q ss_pred CcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhh
Q 016371 230 PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELV 309 (390)
Q Consensus 230 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 309 (390)
|.|+.|+|++|++.+... +..+..+..|+.|.|++|.+.-.++ .++++++|+.|.++.|.+-.+ |..
T Consensus 102 p~levldltynnl~e~~l--pgnff~m~tlralyl~dndfe~lp~--dvg~lt~lqil~lrdndll~l--pke------- 168 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSL--PGNFFYMTTLRALYLGDNDFEILPP--DVGKLTNLQILSLRDNDLLSL--PKE------- 168 (264)
T ss_pred chhhhhhccccccccccC--CcchhHHHHHHHHHhcCCCcccCCh--hhhhhcceeEEeeccCchhhC--cHH-------
Confidence 999999999999976532 2246667899999999999988774 789999999999999998777 766
Q ss_pred hcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccC---CCCCcEEEccCCCCCC
Q 016371 310 SAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDS---FPKLMDIRLSENPVSD 362 (390)
Q Consensus 310 ~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~---l~~L~~L~l~~n~l~~ 362 (390)
++.+..|++|.+.+|+++-+|. .++. ..+=+.+++.+||+..
T Consensus 169 ---------ig~lt~lrelhiqgnrl~vlpp--el~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 169 ---------IGDLTRLRELHIQGNRLTVLPP--ELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred ---------HHHHHHHHHHhcccceeeecCh--hhhhhhhhhhHHHHhhhhCCCCC
Confidence 5677899999999999997652 3432 2344566788888763
No 26
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=99.58 E-value=3.3e-15 Score=135.63 Aligned_cols=68 Identities=37% Similarity=0.763 Sum_probs=62.5
Q ss_pred CCCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeecc
Q 016371 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHN 77 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~ 77 (390)
|.-+.|||||.+.+ ..|+|||+|.+.+..|.|+|+|.|+|.||+||+++|+|||+|.. ..|.|+|+..
T Consensus 1 Ms~lSv~D~Vll~~---~~g~VrfiG~t~f~~GiW~GlELd~p~GkNDGSvnGvRYF~Ckk-~~giFir~~~ 68 (669)
T COG5244 1 MSLLSVNDRVLLGD---KFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKK-RHGIFIRPDD 68 (669)
T ss_pred CceeecCCEEEecc---ccceEEEeeecccccceEEEEEecCCCCCCCCccCceEEEEecC-CcceEEecCc
Confidence 56678999999965 34999999999999999999999999999999999999999998 8999999764
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.57 E-value=4.1e-14 Score=151.85 Aligned_cols=229 Identities=17% Similarity=0.145 Sum_probs=148.0
Q ss_pred cccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEe
Q 016371 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVL 212 (390)
Q Consensus 133 ~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L 212 (390)
+|+.|.+.++.+...+..+. +.+|+.|++++|.+. .++..+..+++|+.|+++++......+.+..+++|++|++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f~--~~~L~~L~L~~s~l~---~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNFR--PENLVKLQMQGSKLE---KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCCCCCCcCC--ccCCcEEECcCcccc---ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEe
Confidence 36666666666665554432 378888899888876 4566677899999999988764455567778899999999
Q ss_pred ecccCCHHHHHHHHhcCCcccEEeccCCC-ccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCC
Q 016371 213 NCTGVNWMQVEILKHSLPALEELHLMGNS-ISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (390)
Q Consensus 213 ~~~~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 291 (390)
++|..-. .++..+..+++|+.|++++|. ++.++.. + ++++|+.|++++|......+ ...++|+.|++++
T Consensus 665 ~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~----i-~l~sL~~L~Lsgc~~L~~~p----~~~~nL~~L~L~~ 734 (1153)
T PLN03210 665 SDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTG----I-NLKSLYRLNLSGCSRLKSFP----DISTNISWLDLDE 734 (1153)
T ss_pred cCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCc----C-CCCCCCEEeCCCCCCccccc----cccCCcCeeecCC
Confidence 9875432 566667888999999999875 4444322 2 67889999999885332111 1246788999999
Q ss_pred CccccccCCCCC--chhhhhhccccc----------c--cCCCCCCCCCEEeCCCCC-CCCchhhhhccCCCCCcEEEcc
Q 016371 292 NNLNRIYYPNND--TIHELVSAHESH----------E--ESYLPFQNLCCLLLGNNM-IEDLASIDSLDSFPKLMDIRLS 356 (390)
Q Consensus 292 n~l~~~~~~~~~--~~~~~~~~~~~~----------~--~~~~~~~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~ 356 (390)
|.++.+ |... ..+..+.+.... . .....+++|+.|+|++|. +..+| ..+.++++|+.|+|+
T Consensus 735 n~i~~l--P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP--~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 735 TAIEEF--PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP--SSIQNLHKLEHLEIE 810 (1153)
T ss_pred Cccccc--cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC--hhhhCCCCCCEEECC
Confidence 888766 4332 222222221100 0 001224678888888884 44444 567788888888888
Q ss_pred CCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 357 ENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 357 ~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+|+... .+|.. + .+++|+.|+++.
T Consensus 811 ~C~~L~----~LP~~--~-~L~sL~~L~Ls~ 834 (1153)
T PLN03210 811 NCINLE----TLPTG--I-NLESLESLDLSG 834 (1153)
T ss_pred CCCCcC----eeCCC--C-CccccCEEECCC
Confidence 876432 34443 2 456666666654
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.56 E-value=7e-16 Score=136.69 Aligned_cols=228 Identities=19% Similarity=0.155 Sum_probs=137.5
Q ss_pred hHHHHHHhccccccEeecCCcccCCCCc----------chhhhcCcccEEECCCCcCCC--hHHHHHHHhcCCCCCEEEc
Q 016371 122 DKIQDKFSKFEELTSAALPYLGVSSPGA----------NIGTIVTNLKELDLTGNLLSD--WKDIGAFGEQLPALAVLNL 189 (390)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~~i~~~~~----------~~~~~~~~L~~L~Ls~n~l~~--~~~i~~~~~~l~~L~~L~l 189 (390)
+.+.+.+...++|+..++++........ .....+|+|++||||+|-|.. .+.+-..+..+..|++|.|
T Consensus 48 ~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L 127 (382)
T KOG1909|consen 48 RAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYL 127 (382)
T ss_pred HHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhh
Confidence 4466677777777777776643322211 111124677888888877643 4455566667777888888
Q ss_pred cCCCCCCccC--------------CCCCCCCccEEEeecccCCH---HHHHHHHhcCCcccEEeccCCCccccCC-CCCC
Q 016371 190 SNNLMSKEVT--------------GLPQLKSIRILVLNCTGVNW---MQVEILKHSLPALEELHLMGNSISEITP-VSSP 251 (390)
Q Consensus 190 s~n~l~~~~~--------------~~~~l~~L~~L~L~~~~l~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~ 251 (390)
++|.+..... ..+.-+.|+++...+|++.. ..+...++..+.|+++.+++|.+..... ....
T Consensus 128 ~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~e 207 (382)
T KOG1909|consen 128 NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAE 207 (382)
T ss_pred hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHH
Confidence 7777653311 12344677777777777642 2345556667777888777777653221 1122
Q ss_pred ccCCCCCccEEEcCCCCCCCchhh---hhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEE
Q 016371 252 IVQGFDNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCL 328 (390)
Q Consensus 252 ~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 328 (390)
.+..++.|+.|||.+|-++..... ..+..+++|+.|++++|.+..-+.-.....+ ....++|++|
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al------------~~~~p~L~vl 275 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL------------KESAPSLEVL 275 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH------------hccCCCCcee
Confidence 456677788888888877654332 4456677788888888777764321111111 1236778888
Q ss_pred eCCCCCCCCchh---hhhccCCCCCcEEEccCCCCC
Q 016371 329 LLGNNMIEDLAS---IDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 329 ~L~~N~i~~~~~---~~~l~~l~~L~~L~l~~n~l~ 361 (390)
.|.+|.|+.... ...+...|.|..|+|++|.+.
T Consensus 276 ~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 276 ELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 888887774221 133445777888888888775
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.49 E-value=4e-16 Score=140.12 Aligned_cols=229 Identities=22% Similarity=0.226 Sum_probs=168.4
Q ss_pred eEEEEeChhHHH-HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCC-CcCCChH-------------------
Q 016371 114 VSIELVGKDKIQ-DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTG-NLLSDWK------------------- 172 (390)
Q Consensus 114 ~~~~~~g~~~l~-~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~------------------- 172 (390)
+.++.-++..|| ..|+.+++|+.|+|++|.|+.+.+.-+..++.|.+|-+.+ |.|+++.
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 456666777777 5789999999999999999999884444457777666555 8777521
Q ss_pred ---HHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeeccc------CCHHH---------------------
Q 016371 173 ---DIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTG------VNWMQ--------------------- 221 (390)
Q Consensus 173 ---~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~~~------l~~~~--------------------- 221 (390)
...+.+..+++|..|.+.+|.+..... .+..+..++++.+..|. +.|..
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl 231 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL 231 (498)
T ss_pred hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence 112445567778888888887765544 46667777777766554 21110
Q ss_pred ----------------------------------HHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCC
Q 016371 222 ----------------------------------VEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDN 267 (390)
Q Consensus 222 ----------------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n 267 (390)
+...++.+++|+.|+|++|.++.+... ++.....+++|.|..|
T Consensus 232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~---aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 232 YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG---AFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh---hhcchhhhhhhhcCcc
Confidence 345578889999999999999998766 7888999999999999
Q ss_pred CCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCC-----chhhh
Q 016371 268 CIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIED-----LASID 342 (390)
Q Consensus 268 ~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~-----~~~~~ 342 (390)
++..+.. ..+..+..|++|+|.+|+|+.+. |.. |..+..|.+|+|-.|.+.- | ..+
T Consensus 309 ~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~-~~a----------------F~~~~~l~~l~l~~Np~~CnC~l~w-l~~ 369 (498)
T KOG4237|consen 309 KLEFVSS-GMFQGLSGLKTLSLYDNQITTVA-PGA----------------FQTLFSLSTLNLLSNPFNCNCRLAW-LGE 369 (498)
T ss_pred hHHHHHH-HhhhccccceeeeecCCeeEEEe-ccc----------------ccccceeeeeehccCcccCccchHH-HHH
Confidence 9988765 67888999999999999999885 444 7888999999999998762 2 112
Q ss_pred hccC-----------CCCCcEEEccCCCCCCCC
Q 016371 343 SLDS-----------FPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 343 ~l~~-----------l~~L~~L~l~~n~l~~~~ 364 (390)
.+.+ -..++.+.+++..+.+-.
T Consensus 370 Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~ 402 (498)
T KOG4237|consen 370 WLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFR 402 (498)
T ss_pred HHhhCCCCCCCCCCCCchhccccchhccccccc
Confidence 2221 124778888888887643
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.48 E-value=3.4e-14 Score=126.07 Aligned_cols=267 Identities=20% Similarity=0.200 Sum_probs=185.4
Q ss_pred eecCCcceEEEEeCh-hHHHHHHhccccccEeecCCcccCCCCc-chhh---hcCcccEEECCCCcCCC-hHHHH-----
Q 016371 107 LSASNKHVSIELVGK-DKIQDKFSKFEELTSAALPYLGVSSPGA-NIGT---IVTNLKELDLTGNLLSD-WKDIG----- 175 (390)
Q Consensus 107 ~~~~~~~~~~~~~g~-~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~---~~~~L~~L~Ls~n~l~~-~~~i~----- 175 (390)
.+++++++.++..-. +.+-+.+..+..++.++|++|.+..... .++. .-++|+..++++-.... ...+|
T Consensus 4 ~s~~gk~lkl~t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~ 83 (382)
T KOG1909|consen 4 FSIGGKSLKLETEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKM 83 (382)
T ss_pred eccCCeeeeeehHhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHH
Confidence 455666666664333 3345667788999999999999876543 2222 22677777777643221 12333
Q ss_pred --HHHhcCCCCCEEEccCCCCCCccC-C----CCCCCCccEEEeecccCCHHHHH------------HHHhcCCcccEEe
Q 016371 176 --AFGEQLPALAVLNLSNNLMSKEVT-G----LPQLKSIRILVLNCTGVNWMQVE------------ILKHSLPALEELH 236 (390)
Q Consensus 176 --~~~~~l~~L~~L~ls~n~l~~~~~-~----~~~l~~L~~L~L~~~~l~~~~~~------------~~~~~l~~L~~L~ 236 (390)
+.+..+|+|++|+||+|.+....+ . +.++..|++|+|.+|.+....-. ..+..-+.|+.+.
T Consensus 84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 455578899999999998865433 2 45789999999999988632221 2234456899999
Q ss_pred ccCCCccccCC-CCCCccCCCCCccEEEcCCCCCCCchh---hhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcc
Q 016371 237 LMGNSISEITP-VSSPIVQGFDNLQLLNLEDNCIAEWSE---ILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAH 312 (390)
Q Consensus 237 L~~n~l~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 312 (390)
..+|.+..... .+...+...+.|+.+.++.|.|..-.. ...+..+++|+.|+|+.|.++........
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La--------- 234 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA--------- 234 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH---------
Confidence 99999865432 122346667899999999998875332 25678999999999999999864311111
Q ss_pred cccccCCCCCCCCCEEeCCCCCCCCchh---hhhcc-CCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCccc
Q 016371 313 ESHEESYLPFQNLCCLLLGNNMIEDLAS---IDSLD-SFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEV 388 (390)
Q Consensus 313 ~~~~~~~~~~~~L~~L~L~~N~i~~~~~---~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i 388 (390)
..+..++.|++|++++|.+.+-.. .+.+. ..|+|+.|++.+|.|+.+....+.. +++..|.|+.||++.-
T Consensus 235 ----kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~--~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 235 ----KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA--CMAEKPDLEKLNLNGN 308 (382)
T ss_pred ----HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH--HHhcchhhHHhcCCcc
Confidence 115667899999999999986332 24444 5899999999999998655333333 4788999999998763
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.45 E-value=8.5e-15 Score=127.41 Aligned_cols=207 Identities=21% Similarity=0.291 Sum_probs=148.0
Q ss_pred HHHHHhccccccEeecCCcc--c--CCCCc-----chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCC
Q 016371 124 IQDKFSKFEELTSAALPYLG--V--SSPGA-----NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLM 194 (390)
Q Consensus 124 l~~~~~~l~~L~~L~L~~~~--i--~~~~~-----~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l 194 (390)
+...+..+.+|..|..++.. + +.+.+ .+.. +.+|+.+.+|.|.-.. +..+...=|.|+++.+.+..+
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~-f~~l~~~~~s~~~~~~---i~~~~~~kptl~t~~v~~s~~ 249 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNA-FRNLKTLKFSALSTEN---IVDIELLKPTLQTICVHNTTI 249 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHH-hhhhheeeeeccchhh---eeceeecCchhheeeeecccc
Confidence 34445566667777666532 1 11111 2222 4788888888876442 333333446777777665443
Q ss_pred CCcc------------------------CCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCC
Q 016371 195 SKEV------------------------TGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSS 250 (390)
Q Consensus 195 ~~~~------------------------~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 250 (390)
+... .....+..|++|+|++|.|+ .+...+.-.|.++.|++++|.++.+.
T Consensus 250 ~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~---- 323 (490)
T KOG1259|consen 250 QDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQ---- 323 (490)
T ss_pred cccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeeh----
Confidence 3210 01224567889999999887 56666677899999999999998775
Q ss_pred CccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeC
Q 016371 251 PIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLL 330 (390)
Q Consensus 251 ~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 330 (390)
.+..+++|++|||++|.++.... +-.++.++++|.|++|.|.++. |...+-+|..||+
T Consensus 324 -nLa~L~~L~~LDLS~N~Ls~~~G--wh~KLGNIKtL~La~N~iE~LS-------------------GL~KLYSLvnLDl 381 (490)
T KOG1259|consen 324 -NLAELPQLQLLDLSGNLLAECVG--WHLKLGNIKTLKLAQNKIETLS-------------------GLRKLYSLVNLDL 381 (490)
T ss_pred -hhhhcccceEeecccchhHhhhh--hHhhhcCEeeeehhhhhHhhhh-------------------hhHhhhhheeccc
Confidence 36778999999999998876543 2236778999999999988762 1567789999999
Q ss_pred CCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016371 331 GNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 331 ~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
++|+|.....+..++++|.|++|.|.+||+..
T Consensus 382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 382 SSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99999998888889999999999999999974
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.42 E-value=2.5e-13 Score=132.06 Aligned_cols=72 Identities=42% Similarity=0.753 Sum_probs=66.7
Q ss_pred CCCCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccC
Q 016371 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNL 78 (390)
Q Consensus 5 ~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~ 78 (390)
++.+++||+||.+.|.. ..|||-|+|...++.|.|+||-.|+|+|||+|++.|.+||.|.. +.|-|+|++.+
T Consensus 2 s~r~lkvG~RVevtgkn-l~G~VayvG~T~FA~G~WvGVvLDep~GKNnGsVqg~qYF~Cd~-ncG~FVr~sq~ 73 (1243)
T KOG0971|consen 2 SPRSLKVGTRVEVTGKN-LQGTVAYVGQTQFAEGKWVGVVLDEPKGKNNGSVQGVQYFECDE-NCGVFVRSSQV 73 (1243)
T ss_pred CCccccccceEEeccCC-ccceEEEecccccccCceEEEEeccccCCCCCcccceeeEecCC-CcceEeehhhh
Confidence 57899999999998653 45999999999999999999999999999999999999999998 99999998874
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=5.5e-13 Score=121.66 Aligned_cols=205 Identities=25% Similarity=0.257 Sum_probs=108.8
Q ss_pred cCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC---CCCCCCCccEEEeecccCCHHHHHHHHhcCCc
Q 016371 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT---GLPQLKSIRILVLNCTGVNWMQVEILKHSLPA 231 (390)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~---~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~ 231 (390)
+.+|+...|.++....... -.....|++++.||||.|-+....+ -...+++|+.|+++.|++....-...-..++.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~-~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGI-EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccch-hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3556666666665553211 1234456666666666665543322 12355566666666655431100111123455
Q ss_pred ccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhc
Q 016371 232 LEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSA 311 (390)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 311 (390)
|+.|.|++|.++...-. ..+..+|+|+.|+|..|....... ....-+..|++|+|++|++-+.. ..
T Consensus 199 lK~L~l~~CGls~k~V~--~~~~~fPsl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~--~~--------- 264 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQ--WILLTFPSLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLIDFD--QG--------- 264 (505)
T ss_pred hheEEeccCCCCHHHHH--HHHHhCCcHHHhhhhcccccceec-chhhhhhHHhhccccCCcccccc--cc---------
Confidence 56666666665532211 123345566666666663111100 11223455666666666654441 10
Q ss_pred ccccccCCCCCCCCCEEeCCCCCCCCchhhhh-----ccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEec
Q 016371 312 HESHEESYLPFQNLCCLLLGNNMIEDLASIDS-----LDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILN 384 (390)
Q Consensus 312 ~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~-----l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln 384 (390)
.-...++.|+.|+++.|.|.++..++. ...+|+|++|+++.|+|.+ .+..--+..+++|+.|+
T Consensus 265 -----~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-----w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 265 -----YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-----WRSLNHLRTLENLKHLR 332 (505)
T ss_pred -----cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-----ccccchhhccchhhhhh
Confidence 114678999999999999987655543 4578999999999999975 33321244455666554
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=4e-14 Score=132.88 Aligned_cols=198 Identities=21% Similarity=0.265 Sum_probs=141.7
Q ss_pred ccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccE
Q 016371 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRI 209 (390)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~ 209 (390)
.+..-...+++.|.+...+.++..+ ..|+.+.|+.|.+. .+|..+.++..|.+|+++.|+++..+..+..++ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f-~~Le~liLy~n~~r---~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAF-VSLESLILYHNCIR---TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhccccccccCchHHHHH-HHHHHHHHHhccce---ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-cee
Confidence 4455566788888888887766654 78888888888887 577788888888889998888887666655544 888
Q ss_pred EEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEec
Q 016371 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYL 289 (390)
Q Consensus 210 L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 289 (390)
|.+++|+++ .++.-++..+.|..|+.+.|.+...+.+ ++.+.+|+.|.+..|++..+++ .+..+ .|..|++
T Consensus 148 li~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~slpsq----l~~l~slr~l~vrRn~l~~lp~--El~~L-pLi~lDf 218 (722)
T KOG0532|consen 148 LIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQSLPSQ----LGYLTSLRDLNVRRNHLEDLPE--ELCSL-PLIRLDF 218 (722)
T ss_pred EEEecCccc--cCCcccccchhHHHhhhhhhhhhhchHH----hhhHHHHHHHHHhhhhhhhCCH--HHhCC-ceeeeec
Confidence 888888877 3444445777888888888888777654 6777888888888888877764 34443 4778888
Q ss_pred CCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhh-ccCCCCCcEEEccCCC
Q 016371 290 NKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDS-LDSFPKLMDIRLSENP 359 (390)
Q Consensus 290 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~-l~~l~~L~~L~l~~n~ 359 (390)
+.|+++.+ |.. |..++.|++|-|.+|.+..-|.--. -++..-.++|+..-|.
T Consensus 219 ScNkis~i--Pv~----------------fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 219 SCNKISYL--PVD----------------FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccCceeec--chh----------------hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 88888777 665 6777888888888888877442111 1233345667766663
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.32 E-value=5.8e-13 Score=110.80 Aligned_cols=136 Identities=24% Similarity=0.305 Sum_probs=50.2
Q ss_pred CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCC
Q 016371 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (390)
Q Consensus 201 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 280 (390)
+.+..++++|+|.+|.|+ .+..+...+.+|+.|++++|.++.+.. +..++.|++|++++|.+++... .....
T Consensus 15 ~~n~~~~~~L~L~~n~I~--~Ie~L~~~l~~L~~L~Ls~N~I~~l~~-----l~~L~~L~~L~L~~N~I~~i~~-~l~~~ 86 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS--TIENLGATLDKLEVLDLSNNQITKLEG-----LPGLPRLKTLDLSNNRISSISE-GLDKN 86 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT---------TT--EEE--SS---S-CH-HHHHH
T ss_pred cccccccccccccccccc--cccchhhhhcCCCEEECCCCCCccccC-----ccChhhhhhcccCCCCCCcccc-chHHh
Confidence 334456677777777776 344443356778888888888877642 5567888888888888887643 11235
Q ss_pred CCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhh--hhccCCCCCcEEEccCC
Q 016371 281 IRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASI--DSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~--~~l~~l~~L~~L~l~~n 358 (390)
+|+|++|+|++|+|.++..-.. +..+++|++|+|.+|.++..+.- -.+..+|+|+.|| +.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~----------------L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD--~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEP----------------LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD--GQ 148 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGG----------------GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET--TE
T ss_pred CCcCCEEECcCCcCCChHHhHH----------------HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC--CE
Confidence 7888888888888877632111 45678888888888888754321 3456788888886 44
Q ss_pred CCCC
Q 016371 359 PVSD 362 (390)
Q Consensus 359 ~l~~ 362 (390)
++++
T Consensus 149 ~V~~ 152 (175)
T PF14580_consen 149 DVTE 152 (175)
T ss_dssp ETTS
T ss_pred EccH
Confidence 5554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.29 E-value=1.2e-12 Score=114.15 Aligned_cols=132 Identities=28% Similarity=0.340 Sum_probs=115.4
Q ss_pred cCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccE
Q 016371 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEE 234 (390)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~ 234 (390)
...|++||||+|.|+ .+-+.+.-+|.++.|++|.|.+... ..++.+++|+.|+|++|.++ .+..+-..+.+++.
T Consensus 283 Wq~LtelDLS~N~I~---~iDESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDLS~N~Ls--~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT---QIDESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDLSGNLLA--ECVGWHLKLGNIKT 356 (490)
T ss_pred Hhhhhhccccccchh---hhhhhhhhccceeEEeccccceeee-hhhhhcccceEeecccchhH--hhhhhHhhhcCEee
Confidence 377999999999998 4557778889999999999999754 45888999999999999887 55666677889999
Q ss_pred EeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccc
Q 016371 235 LHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 235 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 297 (390)
|.|+.|.+.+.. .++.+.+|..||+++|+|.....+..++++|-|+++.|.+|++..+
T Consensus 357 L~La~N~iE~LS-----GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 357 LKLAQNKIETLS-----GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eehhhhhHhhhh-----hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999999998764 3678899999999999999988888999999999999999999876
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=3.8e-12 Score=122.00 Aligned_cols=192 Identities=31% Similarity=0.411 Sum_probs=98.9
Q ss_pred eecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCC-CCCEEEccCCCCCCccCCCCCCCCccEEEeecc
Q 016371 137 AALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLP-ALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCT 215 (390)
Q Consensus 137 L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~ 215 (390)
+.+..+.+......+... +.++.|++.+|.++. ++.....+. +|+.|++++|.+...+..+..++.|+.|++++|
T Consensus 98 l~~~~~~~~~~~~~~~~~-~~l~~L~l~~n~i~~---i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 98 LDLNLNRLRSNISELLEL-TNLTSLDLDNNNITD---IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeccccccccCchhhhcc-cceeEEecCCccccc---CccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 444444443322233332 455666666665553 333333442 566666666655544334555566666666666
Q ss_pred cCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccc
Q 016371 216 GVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLN 295 (390)
Q Consensus 216 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 295 (390)
.+. .++......++|+.|++++|.++.++.. ......|+.|.+++|.+.... ..+..++++..|.+.+|++.
T Consensus 174 ~l~--~l~~~~~~~~~L~~L~ls~N~i~~l~~~----~~~~~~L~~l~~~~N~~~~~~--~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 174 DLS--DLPKLLSNLSNLNNLDLSGNKISDLPPE----IELLSALEELDLSNNSIIELL--SSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred hhh--hhhhhhhhhhhhhheeccCCccccCchh----hhhhhhhhhhhhcCCcceecc--hhhhhcccccccccCCceee
Confidence 555 3333323555666666666666555432 223334666666666322221 23445555555556666655
Q ss_pred cccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016371 296 RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
.+ +.. ...+++|+.|++++|.+++++. +..+.+|+.|++++|.+.
T Consensus 246 ~~--~~~----------------~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 246 DL--PES----------------IGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ec--cch----------------hccccccceecccccccccccc---ccccCccCEEeccCcccc
Confidence 43 222 3445556666666666666542 555666666666666554
No 38
>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]
Probab=99.21 E-value=6.6e-12 Score=123.28 Aligned_cols=73 Identities=37% Similarity=0.628 Sum_probs=64.5
Q ss_pred CCCCCCCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeecc
Q 016371 2 NDCNPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHN 77 (390)
Q Consensus 2 ~~~~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~ 77 (390)
-+|.+.++.||++|++.+.. +|.|||+|++.+..|.|.||+.|++.|||||++.|++||.|.+ ..|.|++...
T Consensus 11 q~~~~~~~~ig~~v~v~~~~--~G~v~y~G~t~f~~G~w~GveL~~p~GKNdGsv~G~rYF~ce~-~kgif~~~~~ 83 (664)
T KOG4568|consen 11 QLDDLGQFIIGRRVWVNNVE--LGFVRYAGETDFAKGIWAGVELLEPKGKNDGSVHGKRYFQCEP-KKGIFFRQGR 83 (664)
T ss_pred hhhhhhhhhhcceEEecCCc--ceeeeeccCcccccceeeceeeccccCCCCcccchhhhhcccc-ccceeecccc
Confidence 35788999999999998874 4999999999999999999999999999999999999999998 4455766543
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=5.3e-13 Score=125.44 Aligned_cols=164 Identities=22% Similarity=0.223 Sum_probs=136.1
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC
Q 016371 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (390)
Q Consensus 120 g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~ 199 (390)
.+..+|..+..+..|..+.|..|.+..++..++.+ ..|+.|||+.|.++ .+|..++.|| |+.|.+++|+++..++
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L-~~lt~l~ls~NqlS---~lp~~lC~lp-Lkvli~sNNkl~~lp~ 160 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIRTIPEAICNL-EALTFLDLSSNQLS---HLPDGLCDLP-LKVLIVSNNKLTSLPE 160 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhccceecchhhhhh-hHHHHhhhccchhh---cCChhhhcCc-ceeEEEecCccccCCc
Confidence 35677888888888888999999999888888776 88999999999988 5677777776 8999999999988877
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcC
Q 016371 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLC 279 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 279 (390)
+++....|..|+.+.|.+. .++.-+..+.+|+.|.+.+|.+..++.. +.. -.|..||++.|++..++ ..+.
T Consensus 161 ~ig~~~tl~~ld~s~nei~--slpsql~~l~slr~l~vrRn~l~~lp~E----l~~-LpLi~lDfScNkis~iP--v~fr 231 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEIQ--SLPSQLGYLTSLRDLNVRRNHLEDLPEE----LCS-LPLIRLDFSCNKISYLP--VDFR 231 (722)
T ss_pred ccccchhHHHhhhhhhhhh--hchHHhhhHHHHHHHHHhhhhhhhCCHH----HhC-CceeeeecccCceeecc--hhhh
Confidence 8888888999999999876 4566668888999999999998887654 443 35889999999998877 4688
Q ss_pred CCCCcCeEecCCCccccc
Q 016371 280 QIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 280 ~l~~L~~L~L~~n~l~~~ 297 (390)
+|+.|++|-|.+|.+..-
T Consensus 232 ~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhheeeeeccCCCCCC
Confidence 899999999999999864
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=2.5e-11 Score=116.41 Aligned_cols=183 Identities=29% Similarity=0.331 Sum_probs=146.0
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcC-cccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCC
Q 016371 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVT-NLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQ 203 (390)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 203 (390)
...+..++.++.+++.++.+..+.+.... .. +|+.|++++|.+. .+|..+..+++|+.|++++|++...++....
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~~~-~~~nL~~L~l~~N~i~---~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIPPLIGL-LKSNLKELDLSDNKIE---SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred chhhhcccceeEEecCCcccccCcccccc-chhhcccccccccchh---hhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 34556668899999999999998874443 24 8999999999998 4556788999999999999999877665558
Q ss_pred CCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016371 204 LKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 204 l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
.+.|+.|++++|+++ .++........|++|.+++|.+..... .+..+..+..+.+.+|++...+ ..++.+++
T Consensus 185 ~~~L~~L~ls~N~i~--~l~~~~~~~~~L~~l~~~~N~~~~~~~----~~~~~~~l~~l~l~~n~~~~~~--~~~~~l~~ 256 (394)
T COG4886 185 LSNLNNLDLSGNKIS--DLPPEIELLSALEELDLSNNSIIELLS----SLSNLKNLSGLELSNNKLEDLP--ESIGNLSN 256 (394)
T ss_pred hhhhhheeccCCccc--cCchhhhhhhhhhhhhhcCCcceecch----hhhhcccccccccCCceeeecc--chhccccc
Confidence 899999999999987 455544455669999999996444332 3677888888889999887743 35678889
Q ss_pred cCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCc
Q 016371 284 LEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDL 338 (390)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~ 338 (390)
|+.|++++|.++.+. . +..+.+|+.|++++|.+...
T Consensus 257 l~~L~~s~n~i~~i~--~-----------------~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 257 LETLDLSNNQISSIS--S-----------------LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cceeccccccccccc--c-----------------ccccCccCEEeccCcccccc
Confidence 999999999999883 2 35678999999999988754
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.13 E-value=1.5e-12 Score=125.50 Aligned_cols=179 Identities=22% Similarity=0.320 Sum_probs=132.9
Q ss_pred chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCC----------ccCCCCCCCCccEEEeecccCCH
Q 016371 150 NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK----------EVTGLPQLKSIRILVLNCTGVNW 219 (390)
Q Consensus 150 ~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~----------~~~~~~~l~~L~~L~L~~~~l~~ 219 (390)
.++.+ ..|+.|.|.++.+.....+-..- ..|++|..+ |.+.. .+..-.....|.+.+.+.|.+.
T Consensus 104 ~ifpF-~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 104 SIFPF-RSLRVLELRGCDLSTAKGLQELR---HQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred eeccc-cceeeEEecCcchhhhhhhHHHH---Hhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 66665 89999999999988643332222 234444333 22221 1111223456778888888886
Q ss_pred HHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccC
Q 016371 220 MQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYY 299 (390)
Q Consensus 220 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 299 (390)
.+...+.-++.|+.|+|++|+++... .+..++.|++|||+.|.+...+.+..- .+ +|..|++++|.++.+..
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v~-----~Lr~l~~LkhLDlsyN~L~~vp~l~~~-gc-~L~~L~lrnN~l~tL~g 249 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKVD-----NLRRLPKLKHLDLSYNCLRHVPQLSMV-GC-KLQLLNLRNNALTTLRG 249 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhhH-----HHHhcccccccccccchhccccccchh-hh-hheeeeecccHHHhhhh
Confidence 45666677899999999999999875 478899999999999999987764222 23 49999999999988731
Q ss_pred CCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016371 300 PNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
+.++.+|+.||+++|-|.+...++-+..+..|+.|+|.|||+.
T Consensus 250 -------------------ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 -------------------IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -------------------HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 5678999999999999988766666778889999999999987
No 42
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=99.08 E-value=1.2e-10 Score=96.33 Aligned_cols=110 Identities=32% Similarity=0.468 Sum_probs=94.7
Q ss_pred CCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCC
Q 016371 257 DNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIE 336 (390)
Q Consensus 257 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~ 336 (390)
.....+||++|.+.... .|..++.|.+|.|++|+|+.+. |.. ...+++|+.|.|.+|.|.
T Consensus 42 d~~d~iDLtdNdl~~l~---~lp~l~rL~tLll~nNrIt~I~-p~L----------------~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD---NLPHLPRLHTLLLNNNRITRID-PDL----------------DTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccceecccccchhhcc---cCCCccccceEEecCCcceeec-cch----------------hhhccccceEEecCcchh
Confidence 56788999999887744 4788899999999999999985 443 345689999999999999
Q ss_pred CchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcccC
Q 016371 337 DLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEVN 389 (390)
Q Consensus 337 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i~ 389 (390)
.+..++-+..||+|++|.+-+||+... .--|++++-++|+|++||...|+
T Consensus 102 ~l~dl~pLa~~p~L~~Ltll~Npv~~k---~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 102 ELGDLDPLASCPKLEYLTLLGNPVEHK---KNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhhhcchhccCCccceeeecCCchhcc---cCceeEEEEecCcceEeehhhhh
Confidence 888788899999999999999999873 35788889999999999998886
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.4e-11 Score=105.95 Aligned_cols=183 Identities=19% Similarity=0.176 Sum_probs=131.8
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecc-cCCHHHHHHHHhcCCccc
Q 016371 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCT-GVNWMQVEILKHSLPALE 233 (390)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~~-~l~~~~~~~~~~~l~~L~ 233 (390)
..|+.||||...++. ..+-.+++++.+|+.|.+.++++...+. .++.-..|+.|+++.| .++...+..++..|..|.
T Consensus 185 sRlq~lDLS~s~it~-stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITV-STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeH-HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 468999999888874 4666778889999999999998887655 5778888999999885 577767888889999999
Q ss_pred EEeccCCCccccCCCCCCccCC-CCCccEEEcCCCC--CCCchhhhh-cCCCCCcCeEecCCCc-cccccCCCCCchhhh
Q 016371 234 ELHLMGNSISEITPVSSPIVQG-FDNLQLLNLEDNC--IAEWSEILK-LCQIRSLEQLYLNKNN-LNRIYYPNNDTIHEL 308 (390)
Q Consensus 234 ~L~L~~n~l~~~~~~~~~~~~~-l~~L~~L~L~~n~--l~~~~~~~~-l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~ 308 (390)
+|++++|.+...... ..+.+ -++|+.|+|+++. +..- .+.. ...+|+|.+|+|+.|. ++.- .-..
T Consensus 264 ~LNlsWc~l~~~~Vt--v~V~hise~l~~LNlsG~rrnl~~s-h~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~------ 333 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVT--VAVAHISETLTQLNLSGYRRNLQKS-HLSTLVRRCPNLVHLDLSDSVMLKND-CFQE------ 333 (419)
T ss_pred hcCchHhhccchhhh--HHHhhhchhhhhhhhhhhHhhhhhh-HHHHHHHhCCceeeeccccccccCch-HHHH------
Confidence 999999987654311 11222 2678889999874 2221 1222 3468999999999875 4431 1111
Q ss_pred hhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCC
Q 016371 309 VSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENP 359 (390)
Q Consensus 309 ~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~ 359 (390)
+..|+.|++|.++.|-.-....+-.+...|.|.+|++-++-
T Consensus 334 ----------~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 334 ----------FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ----------HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 56788999999999944433344567788999999988873
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.97 E-value=8.9e-11 Score=112.99 Aligned_cols=157 Identities=33% Similarity=0.407 Sum_probs=105.2
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCC
Q 016371 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLK 205 (390)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~ 205 (390)
..+..+++|+.+++.+|.|..+...+. .+++|+.|++++|.|.++.. +..++.|+.|++++|.+... ..+..+.
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~-~~~~L~~L~ls~N~I~~i~~----l~~l~~L~~L~l~~N~i~~~-~~~~~l~ 162 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLS-SLVNLQVLDLSFNKITKLEG----LSTLTLLKELNLSGNLISDI-SGLESLK 162 (414)
T ss_pred cccccccceeeeeccccchhhcccchh-hhhcchheeccccccccccc----hhhccchhhheeccCcchhc-cCCccch
Confidence 346677888888888888887754233 35888888888888887433 45667788888888888743 4566678
Q ss_pred CccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC--
Q 016371 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS-- 283 (390)
Q Consensus 206 ~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~-- 283 (390)
.|+.+++++|++....... ...+.+++.+.+..|.+..+.. +..+..+..+++..|.++.... +..++.
T Consensus 163 ~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~-----~~~~~~l~~~~l~~n~i~~~~~---l~~~~~~~ 233 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG-----LDLLKKLVLLSLLDNKISKLEG---LNELVMLH 233 (414)
T ss_pred hhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc-----hHHHHHHHHhhcccccceeccC---cccchhHH
Confidence 8888888888876322211 3677888888888888765542 3334455555666666665433 222233
Q ss_pred cCeEecCCCccccc
Q 016371 284 LEQLYLNKNNLNRI 297 (390)
Q Consensus 284 L~~L~L~~n~l~~~ 297 (390)
|+.+.+++|.+...
T Consensus 234 L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 234 LRELYLSGNRISRS 247 (414)
T ss_pred HHHHhcccCccccc
Confidence 67777777777654
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4e-11 Score=104.66 Aligned_cols=201 Identities=19% Similarity=0.123 Sum_probs=141.5
Q ss_pred cccEeecCCcccCCCCc-chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCC-CCCCccC--CCCCCCCcc
Q 016371 133 ELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNN-LMSKEVT--GLPQLKSIR 208 (390)
Q Consensus 133 ~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n-~l~~~~~--~~~~l~~L~ 208 (390)
.|+.++|+...|+.... .+..-|.+|+.|.|.++.+.+ .+...+.+-.+|+.|+++.+ .++.... -+.+|..|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 58889999887765443 555668999999999999998 88888889999999999985 4554322 256899999
Q ss_pred EEEeecccCCHHHHHHHHhc-CCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeE
Q 016371 209 ILVLNCTGVNWMQVEILKHS-LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (390)
Q Consensus 209 ~L~L~~~~l~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 287 (390)
.|++++|.+....+..++.+ -++|..|+++++.-.-....++.....+++|.+|||++|..-....+..+.+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 99999998876555554433 35799999988742211111122356789999999999864443445677889999999
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhcc-CCCCCcEE
Q 016371 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLD-SFPKLMDI 353 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~-~l~~L~~L 353 (390)
.++.|..-. |..+ --+...|+|.+||+.++-=.+ .++.+. .+|+|+.-
T Consensus 344 SlsRCY~i~---p~~~-------------~~l~s~psl~yLdv~g~vsdt--~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 344 SLSRCYDII---PETL-------------LELNSKPSLVYLDVFGCVSDT--TMELLKEMLSHLKIN 392 (419)
T ss_pred ehhhhcCCC---hHHe-------------eeeccCcceEEEEeccccCch--HHHHHHHhCcccccc
Confidence 999987432 2111 015677999999999873332 223333 46766543
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=2.7e-09 Score=93.39 Aligned_cols=201 Identities=19% Similarity=0.225 Sum_probs=148.6
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcch-hhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCcc
Q 016371 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANI-GTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEV 198 (390)
Q Consensus 120 g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~ 198 (390)
.|+.+...+.++++|+.|+++.|.+.....+. .. ..+|++|-|.+..+. |..+...+..+|.++.|.+|.|.+....
T Consensus 85 dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p-~~nl~~lVLNgT~L~-w~~~~s~l~~lP~vtelHmS~N~~rq~n 162 (418)
T KOG2982|consen 85 DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP-LKNLRVLVLNGTGLS-WTQSTSSLDDLPKVTELHMSDNSLRQLN 162 (418)
T ss_pred cHHHHHHHHhcCccceEeeccCCcCCCccccCccc-ccceEEEEEcCCCCC-hhhhhhhhhcchhhhhhhhccchhhhhc
Confidence 47888888999999999999999987765544 23 389999999888775 4566777889999999999999554321
Q ss_pred ---CCCC-CCCCccEEEeecccCC-HHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCch
Q 016371 199 ---TGLP-QLKSIRILVLNCTGVN-WMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWS 273 (390)
Q Consensus 199 ---~~~~-~l~~L~~L~L~~~~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 273 (390)
.... .-+.+++|.+..|... |.....+...+|++..+.++.|.+.+.... .....++.+.-|+|+.|+|.+|.
T Consensus 163 ~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e--k~se~~p~~~~LnL~~~~idswa 240 (418)
T KOG2982|consen 163 LDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE--KGSEPFPSLSCLNLGANNIDSWA 240 (418)
T ss_pred cccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc--ccCCCCCcchhhhhcccccccHH
Confidence 1122 2346777777777543 566777778899999999999988765432 23456678889999999999999
Q ss_pred hhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCC
Q 016371 274 EILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIED 337 (390)
Q Consensus 274 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~ 337 (390)
.+..+..++.|..|.++++++.+.- ... +...--+..+++++.|+=+ +|+.
T Consensus 241 svD~Ln~f~~l~dlRv~~~Pl~d~l--~~~---------err~llIaRL~~v~vLNGs--kIss 291 (418)
T KOG2982|consen 241 SVDALNGFPQLVDLRVSENPLSDPL--RGG---------ERRFLLIARLTKVQVLNGS--KISS 291 (418)
T ss_pred HHHHHcCCchhheeeccCCcccccc--cCC---------cceEEEEeeccceEEecCc--ccch
Confidence 9999999999999999999987641 110 0001115677888888744 6653
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=2.3e-10 Score=110.14 Aligned_cols=216 Identities=25% Similarity=0.288 Sum_probs=148.3
Q ss_pred hccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCcc
Q 016371 129 SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIR 208 (390)
Q Consensus 129 ~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~ 208 (390)
..+..++.+++..|.+......+.. +.+|+.|++.+|.+..+ ...+..+++|++|++++|.|+.. ..+..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~-~~~l~~l~l~~n~i~~i---~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSK-LKSLEALDLYDNKIEKI---ENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhhhhhccccc-ccceeeeeccccchhhc---ccchhhhhcchheeccccccccc-cchhhccchh
Confidence 3556667777888888874333444 48999999999999853 33367899999999999999754 4566777799
Q ss_pred EEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEe
Q 016371 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (390)
Q Consensus 209 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 288 (390)
.|++.+|.++ .+..+ ..++.|+.+++++|.+..+... . ...+.+++.+.+.+|.+..+..+ ..+..+..++
T Consensus 144 ~L~l~~N~i~--~~~~~-~~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~i~~i~~~---~~~~~l~~~~ 214 (414)
T KOG0531|consen 144 ELNLSGNLIS--DISGL-ESLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGNSIREIEGL---DLLKKLVLLS 214 (414)
T ss_pred hheeccCcch--hccCC-ccchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCCchhcccch---HHHHHHHHhh
Confidence 9999999987 33333 4578999999999999877541 0 36678899999999998876543 3344555558
Q ss_pred cCCCccccccCCCCCch--hhhhhcccccc----cCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016371 289 LNKNNLNRIYYPNNDTI--HELVSAHESHE----ESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
+..|.++.+........ ++.+....+.. .++..+..+..|++.+|++.... .+...+.+..+....|++.
T Consensus 215 l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~---~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 215 LLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE---GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccc---cccccchHHHhccCcchhc
Confidence 88898887753332222 34444444433 23445666777777777666543 3455566666666666655
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=3.9e-09 Score=72.29 Aligned_cols=61 Identities=33% Similarity=0.507 Sum_probs=53.1
Q ss_pred CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCC
Q 016371 282 RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPV 360 (390)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l 360 (390)
|+|++|++++|+|+.+ |... +..+++|++|++++|+|+.++ ...+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i--~~~~---------------f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEI--PPDS---------------FSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEE--CTTT---------------TTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCcc--CHHH---------------HcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCcC
Confidence 6799999999999988 4331 788999999999999999874 47899999999999999985
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.81 E-value=5.7e-09 Score=90.26 Aligned_cols=242 Identities=18% Similarity=0.204 Sum_probs=157.0
Q ss_pred ecCCcceEEEEeCh-hHHHHHHhccccccEeecCCcccCCCCc-chhhh---cCcccEEECCCCcCCC-hHH-------H
Q 016371 108 SASNKHVSIELVGK-DKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTI---VTNLKELDLTGNLLSD-WKD-------I 174 (390)
Q Consensus 108 ~~~~~~~~~~~~g~-~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~---~~~L~~L~Ls~n~l~~-~~~-------i 174 (390)
+++++.+.++...- ...-+.+..+..++.++|++|.|+.... .++.. -.+|+..++++-.... .+. +
T Consensus 5 SI~gk~lKl~T~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~L 84 (388)
T COG5238 5 SIGGKKLKLETKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVML 84 (388)
T ss_pred ccCCceeeccccchhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHH
Confidence 44555544543222 3344566678999999999999987544 33222 2667777776643322 123 3
Q ss_pred HHHHhcCCCCCEEEccCCCCCCccCC-----CCCCCCccEEEeecccCC---HHHHHHH---------HhcCCcccEEec
Q 016371 175 GAFGEQLPALAVLNLSNNLMSKEVTG-----LPQLKSIRILVLNCTGVN---WMQVEIL---------KHSLPALEELHL 237 (390)
Q Consensus 175 ~~~~~~l~~L~~L~ls~n~l~~~~~~-----~~~l~~L~~L~L~~~~l~---~~~~~~~---------~~~l~~L~~L~L 237 (390)
.+.+-+||+|+..+||.|.|....+. +++-..|++|.|++|.+. +..+... +..-|.|+....
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 35566899999999999998765442 557789999999999764 2222211 234578999999
Q ss_pred cCCCccccCCC-CCCccCCCCCccEEEcCCCCCCCc--hhh--hhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcc
Q 016371 238 MGNSISEITPV-SSPIVQGFDNLQLLNLEDNCIAEW--SEI--LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAH 312 (390)
Q Consensus 238 ~~n~l~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~--~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 312 (390)
.+|++..-+.. ....+..-..|+.+.+..|.|.-. ..+ ..+..+.+|+.|+|+.|.++..+.......
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a------- 237 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA------- 237 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH-------
Confidence 99988654321 111233346889999999988743 222 344567899999999999886531111000
Q ss_pred cccccCCCCCCCCCEEeCCCCCCCCchhh---hhcc--CCCCCcEEEccCCCCCC
Q 016371 313 ESHEESYLPFQNLCCLLLGNNMIEDLASI---DSLD--SFPKLMDIRLSENPVSD 362 (390)
Q Consensus 313 ~~~~~~~~~~~~L~~L~L~~N~i~~~~~~---~~l~--~l~~L~~L~l~~n~l~~ 362 (390)
....+.|++|.+.+|-++....- ..+. ..|+|..|...+|....
T Consensus 238 ------l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 238 ------LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred ------hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 35567789999999988753322 2232 47899999999998764
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=8.9e-09 Score=70.51 Aligned_cols=61 Identities=33% Similarity=0.494 Sum_probs=53.3
Q ss_pred CcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCcc
Q 016371 230 PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNL 294 (390)
Q Consensus 230 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l 294 (390)
|+|++|++++|.++.++.. .+..+++|++|++++|.++..++ ..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~---~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD---SFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTT---TTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHH---HHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988765 68889999999999999988776 6788999999999999975
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.70 E-value=9.8e-09 Score=88.83 Aligned_cols=248 Identities=17% Similarity=0.130 Sum_probs=164.7
Q ss_pred ceEEeecCCcceEEEEeChhHHHHHHhccccccEeecCCcccCCCCc----------chhhhcCcccEEECCCCcCCC--
Q 016371 103 EMYVLSASNKHVSIELVGKDKIQDKFSKFEELTSAALPYLGVSSPGA----------NIGTIVTNLKELDLTGNLLSD-- 170 (390)
Q Consensus 103 ~~~~~~~~~~~~~~~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~----------~~~~~~~~L~~L~Ls~n~l~~-- 170 (390)
.+.-+.+++.. +..--++.+...+.+-++|+..+++.-..+..-. ...-.||.|+..+||+|.|..
T Consensus 31 ~~~evdLSGNt--igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 31 ELVEVDLSGNT--IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred ceeEEeccCCc--ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 33444455554 2233346688888888999999888754433222 111237999999999999865
Q ss_pred hHHHHHHHhcCCCCCEEEccCCCCCCccC--------------CCCCCCCccEEEeecccCCH---HHHHHHHhcCCccc
Q 016371 171 WKDIGAFGEQLPALAVLNLSNNLMSKEVT--------------GLPQLKSIRILVLNCTGVNW---MQVEILKHSLPALE 233 (390)
Q Consensus 171 ~~~i~~~~~~l~~L~~L~ls~n~l~~~~~--------------~~~~l~~L~~L~L~~~~l~~---~~~~~~~~~l~~L~ 233 (390)
...+.+.+++-..|.+|.+++|.+..... ....-+.|++.....|++.. ......+..-.+|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 23455667788899999999998864321 12356889999999998752 22333344446899
Q ss_pred EEeccCCCccccC--CCCCCccCCCCCccEEEcCCCCCCCchhh---hhcCCCCCcCeEecCCCccccccCCCCCchhhh
Q 016371 234 ELHLMGNSISEIT--PVSSPIVQGFDNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHEL 308 (390)
Q Consensus 234 ~L~L~~n~l~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 308 (390)
++.+..|.|.... ......+..+.+|+.|||.+|-++..... ..+..++.|+.|.+..|-++..+...-+....
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~- 267 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN- 267 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh-
Confidence 9999999886431 10001234568999999999998865432 44667888999999999988654222111100
Q ss_pred hhcccccccCCCCCCCCCEEeCCCCCCCCchhh----hhc--cCCCCCcEEEccCCCCCCC
Q 016371 309 VSAHESHEESYLPFQNLCCLLLGNNMIEDLASI----DSL--DSFPKLMDIRLSENPVSDP 363 (390)
Q Consensus 309 ~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~----~~l--~~l~~L~~L~l~~n~l~~~ 363 (390)
-...++|+.|-..+|.+..-... ..+ .++|-|..|.+.+|.|.+.
T Consensus 268 ----------e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 268 ----------EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred ----------hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 13468999999999976542111 112 2688899999999999863
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.68 E-value=2.2e-10 Score=110.92 Aligned_cols=106 Identities=24% Similarity=0.286 Sum_probs=51.6
Q ss_pred cCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCccc
Q 016371 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALE 233 (390)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~ 233 (390)
++.|+.|+|++|++.+. +.+..|++|++|||+.|.+...+. ....+ .|+.|++.+|.++ .+..+ .++.+|+
T Consensus 186 l~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~--tL~gi-e~LksL~ 257 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALT--TLRGI-ENLKSLY 257 (1096)
T ss_pred HHHhhhhccchhhhhhh----HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHH--hhhhH-Hhhhhhh
Confidence 35555566666655542 244555556666666655543322 11122 2555555555544 22222 4455555
Q ss_pred EEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCC
Q 016371 234 ELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIA 270 (390)
Q Consensus 234 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 270 (390)
.||+++|-+.+...- ..+..+..|+.|.|.+|.+.
T Consensus 258 ~LDlsyNll~~hseL--~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSEL--EPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccchhHhhhhcchhh--hHHHHHHHHHHHhhcCCccc
Confidence 555555555443211 12334455555555555554
No 53
>PLN03150 hypothetical protein; Provisional
Probab=98.63 E-value=5.1e-08 Score=98.36 Aligned_cols=85 Identities=27% Similarity=0.278 Sum_probs=38.4
Q ss_pred ccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEe
Q 016371 158 LKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELH 236 (390)
Q Consensus 158 L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~ 236 (390)
++.|+|++|.+.+ .+|..+..+++|+.|+|++|.+.+.++ .+..+++|+.|+|++|.+++ .++..+..+++|++|+
T Consensus 420 v~~L~L~~n~L~g--~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRG--FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccc--cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-CCchHHhcCCCCCEEE
Confidence 4444444444443 344444444455555555444443333 34444444444444444443 2333334444444444
Q ss_pred ccCCCcccc
Q 016371 237 LMGNSISEI 245 (390)
Q Consensus 237 L~~n~l~~~ 245 (390)
|++|.+++.
T Consensus 497 Ls~N~l~g~ 505 (623)
T PLN03150 497 LNGNSLSGR 505 (623)
T ss_pred CcCCccccc
Confidence 444444433
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=9.6e-08 Score=96.41 Aligned_cols=106 Identities=25% Similarity=0.304 Sum_probs=86.4
Q ss_pred ccEeecCCcccCCCCc-chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEE
Q 016371 134 LTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILV 211 (390)
Q Consensus 134 L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~ 211 (390)
++.|+|+++.+.+..+ .+.. +++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|++++.+| .+..+++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRG--NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccC--cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 6778899999887666 5555 5999999999999987 788899999999999999999998777 588999999999
Q ss_pred eecccCCHHHHHHHHhcCCcccEEeccCCCc
Q 016371 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSI 242 (390)
Q Consensus 212 L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l 242 (390)
|++|.+++.....+...+.++..+++.+|..
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCcc
Confidence 9999998744333323335677888887754
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.54 E-value=1.2e-08 Score=93.19 Aligned_cols=258 Identities=17% Similarity=0.103 Sum_probs=131.8
Q ss_pred eChhHHHHHHhccccccEeecCCcccCCCCc--chhhhcCcccEEECCCCc-CCChHHHHHHHhcCCCCCEEEccCCC-C
Q 016371 119 VGKDKIQDKFSKFEELTSAALPYLGVSSPGA--NIGTIVTNLKELDLTGNL-LSDWKDIGAFGEQLPALAVLNLSNNL-M 194 (390)
Q Consensus 119 ~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~--~~~~~~~~L~~L~Ls~n~-l~~~~~i~~~~~~l~~L~~L~ls~n~-l 194 (390)
+|.+.+.....++++++.|.+.++....... ++...|++|+.|+|..|. +++ ..+-.....+++|++|++|++. +
T Consensus 151 v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~-~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 151 VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD-VSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH-HHHHHHHHhhhhHHHhhhccCchh
Confidence 4456677777889999999888886333222 778889999999998854 443 2233356689999999999874 4
Q ss_pred CCcc--CCCCCCCCccEEEeeccc-CCHHHHHHHHhcCCcccEEeccCCC-ccccCCCCCCccCCCCCccEEEcCCCCCC
Q 016371 195 SKEV--TGLPQLKSIRILVLNCTG-VNWMQVEILKHSLPALEELHLMGNS-ISEITPVSSPIVQGFDNLQLLNLEDNCIA 270 (390)
Q Consensus 195 ~~~~--~~~~~l~~L~~L~L~~~~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 270 (390)
++.. +-..++..++.+.+.+|. +....+......++.+..+++..|. +++.... ..-..+..|+.|+.+++...
T Consensus 230 ~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~--~i~~~c~~lq~l~~s~~t~~ 307 (483)
T KOG4341|consen 230 SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW--LIACGCHALQVLCYSSCTDI 307 (483)
T ss_pred hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH--HHhhhhhHhhhhcccCCCCC
Confidence 4321 112244445555444432 2222333333444444445444432 2222110 01112334444444444322
Q ss_pred CchhhhhcC-CCCCcCeEecCCCc-cccccCCCCCchh---hhhhcccc-------cccCCCCCCCCCEEeCCCC-CCCC
Q 016371 271 EWSEILKLC-QIRSLEQLYLNKNN-LNRIYYPNNDTIH---ELVSAHES-------HEESYLPFQNLCCLLLGNN-MIED 337 (390)
Q Consensus 271 ~~~~~~~l~-~l~~L~~L~L~~n~-l~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~L~~L~L~~N-~i~~ 337 (390)
+...+..++ +.++|+.|-+..|+ +++..+....... +.+...+- ...-..+++.||.|.|++| .|++
T Consensus 308 ~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 308 TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence 222222222 24444444444443 2222111110000 00000000 0001456888999999988 5555
Q ss_pred chhhhhc----cCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecC
Q 016371 338 LASIDSL----DSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 385 (390)
Q Consensus 338 ~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 385 (390)
. .+..+ .....|..+.++++|...+. .-.. +..+++|+.+++
T Consensus 388 ~-gi~~l~~~~c~~~~l~~lEL~n~p~i~d~---~Le~--l~~c~~Leri~l 433 (483)
T KOG4341|consen 388 E-GIRHLSSSSCSLEGLEVLELDNCPLITDA---TLEH--LSICRNLERIEL 433 (483)
T ss_pred h-hhhhhhhccccccccceeeecCCCCchHH---HHHH--HhhCcccceeee
Confidence 4 22222 24667888889999877522 3333 667778877654
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=5.8e-09 Score=90.49 Aligned_cols=111 Identities=25% Similarity=0.307 Sum_probs=91.0
Q ss_pred CCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCC
Q 016371 256 FDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMI 335 (390)
Q Consensus 256 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i 335 (390)
+.+.+.|+.-+|.+.++ ..+..++.|+.|.|+-|+|+.+.. +..|++|++|+|..|.|
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p-------------------l~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP-------------------LQRCTRLKELYLRKNCI 75 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh-------------------HHHHHHHHHHHHHhccc
Confidence 34567788888888774 346788999999999999998741 56789999999999999
Q ss_pred CCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcccC
Q 016371 336 EDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEVN 389 (390)
Q Consensus 336 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i~ 389 (390)
.++..+..|.++|+|+.|.|..||=.... +.--+..++.-||+|++||--.||
T Consensus 76 ~sldEL~YLknlpsLr~LWL~ENPCc~~a-g~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 76 ESLDELEYLKNLPSLRTLWLDENPCCGEA-GQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred ccHHHHHHHhcCchhhhHhhccCCccccc-chhHHHHHHHHcccchhccCcccc
Confidence 99888888999999999999999977544 445566678899999999977665
No 57
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.50 E-value=7.8e-08 Score=99.53 Aligned_cols=106 Identities=25% Similarity=0.207 Sum_probs=56.5
Q ss_pred ccccEeecCCcc--cCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccE
Q 016371 132 EELTSAALPYLG--VSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRI 209 (390)
Q Consensus 132 ~~L~~L~L~~~~--i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~ 209 (390)
++|+.|-+..|. +......++..+|.|+.|||++|.=-. .+|..++.|-+|++|++++..+...+..+..+..|.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 345555555554 333333444445666666666543222 5566666666666666666666655555666666666
Q ss_pred EEeecccCCHHHHHHHHhcCCcccEEeccCC
Q 016371 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGN 240 (390)
Q Consensus 210 L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n 240 (390)
|++..+.-.. .++.....+.+|++|.+...
T Consensus 623 Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 623 LNLEVTGRLE-SIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eccccccccc-cccchhhhcccccEEEeecc
Confidence 6665543211 22344444566666655443
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.50 E-value=7.5e-08 Score=97.19 Aligned_cols=160 Identities=21% Similarity=0.302 Sum_probs=116.6
Q ss_pred CCCCCEEEccCCCC-CCccC-CCC-CCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCC
Q 016371 181 LPALAVLNLSNNLM-SKEVT-GLP-QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFD 257 (390)
Q Consensus 181 l~~L~~L~ls~n~l-~~~~~-~~~-~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 257 (390)
-.+|++|++++... ...++ .++ -+|+|++|.+.+-.+...++..+..++|+|..||+++.+++.+. .+++++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~-----GIS~Lk 195 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS-----GISRLK 195 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH-----HHhccc
Confidence 35799999988643 22222 333 67999999999988776678888899999999999999998773 478899
Q ss_pred CccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCC
Q 016371 258 NLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIED 337 (390)
Q Consensus 258 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~ 337 (390)
+|+.|.+.+=.+.....+..+..+++|+.||+|....... +... ..+ .+....+|+|+.||.|+..+..
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~--~~ii--~qY-------lec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD--TKII--EQY-------LECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccc--hHHH--HHH-------HHhcccCccccEEecCCcchhH
Confidence 9999999998888877777888999999999998765543 2110 001 1113458999999999888876
Q ss_pred chhhhh-ccCCCCCcEEEccC
Q 016371 338 LASIDS-LDSFPKLMDIRLSE 357 (390)
Q Consensus 338 ~~~~~~-l~~l~~L~~L~l~~ 357 (390)
. .++. +..-|+|+.+..-+
T Consensus 265 ~-~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 265 E-ILEELLNSHPNLQQIAALD 284 (699)
T ss_pred H-HHHHHHHhCccHhhhhhhh
Confidence 4 3333 34566666665443
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.46 E-value=9.6e-08 Score=87.46 Aligned_cols=162 Identities=20% Similarity=0.172 Sum_probs=114.4
Q ss_pred CCCCccEEEeecc-cCCHHHHHHHHhcCCcccEEeccCCCc-cccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhc-C
Q 016371 203 QLKSIRILVLNCT-GVNWMQVEILKHSLPALEELHLMGNSI-SEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL-C 279 (390)
Q Consensus 203 ~l~~L~~L~L~~~-~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l-~ 279 (390)
.+..|+.|..+++ .++...+..+..++++|+.|-++.|+. ++.-.. ..-.+.+.|+.+++.++.......+..+ .
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft--~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT--MLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh--hhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 5678889988875 567777788888999999999999873 332211 1235678899999999976544434444 4
Q ss_pred CCCCcCeEecCCCc-cccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCC
Q 016371 280 QIRSLEQLYLNKNN-LNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 280 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n 358 (390)
+++.|+.|.|++|. +++.++... ..+......|+.|.|+++.......++.+..+++|+.+++-+|
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l-------------~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHL-------------SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhh-------------hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 68999999999987 444421110 0113557899999999996665456788899999999999998
Q ss_pred CCCCCCCcchhhhhhhhhcCCceEe
Q 016371 359 PVSDPGRGGISRFAIIARLGKIKIL 383 (390)
Q Consensus 359 ~l~~~~~~~~~~~~~i~~l~~L~~L 383 (390)
.-... ..+.+. ..++|++++.
T Consensus 437 q~vtk--~~i~~~--~~~lp~i~v~ 457 (483)
T KOG4341|consen 437 QDVTK--EAISRF--ATHLPNIKVH 457 (483)
T ss_pred hhhhh--hhhHHH--HhhCccceeh
Confidence 74421 234444 6788888775
No 60
>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]
Probab=98.36 E-value=9.5e-08 Score=94.41 Aligned_cols=72 Identities=40% Similarity=0.701 Sum_probs=65.2
Q ss_pred CCCCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCC
Q 016371 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (390)
Q Consensus 5 ~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~ 79 (390)
+|..+.||+||.+.|. ..|++||.|...+..|.|.|+|.|++.|+++|++.+++||+|.+ .+|.|....++.
T Consensus 151 ~~~~l~v~dr~l~~gq--~~~~~r~~~~t~fa~g~w~~~elde~~~~~d~sv~k~~~~~~k~-ky~~f~~v~kv~ 222 (664)
T KOG4568|consen 151 SMLGLRVGDRVLVGGQ--KSGTLRYSGHTKFASGSWLGVELDEPVGKNDGSVGKVRYFQCKP-KYGKFAPVQKVF 222 (664)
T ss_pred CccccccccceeecCc--ccchhhhhccccccCCcccchhcccccccccccccccccccCcc-hhcchhHHHHHh
Confidence 5789999999999754 56999999999999999999999999999999999999999998 889988776654
No 61
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=98.36 E-value=8.4e-07 Score=82.64 Aligned_cols=77 Identities=29% Similarity=0.454 Sum_probs=62.7
Q ss_pred CCCCCCEEEeCCCC---eeeEEEEEeeecCCCCCeEEEEEecCCC-----CCCCCEECCEEEEecCCCCcceeeeeccCC
Q 016371 8 SYKLGQRVHSANDA---RRIGTVKYVGEVQGYSGTWLGVDWDYGN-----GKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (390)
Q Consensus 8 ~~~~g~~v~~~~~~---~~~~tv~~~g~~~~~~~~w~Gve~d~~~-----g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~ 79 (390)
-++||+-|.|.... +-+|.|||||.-|+..|.|+|||+||.+ +.-||+..|.|||.|.. +...|+...+-.
T Consensus 235 ~L~IGslveV~np~~~~~~ygvVrWIG~pP~~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlftc~d-~~a~Fv~~~scs 313 (724)
T KOG3556|consen 235 NLKIGSLVEVENPETMRRVYGVVRWIGEPPEASGVLYGVEFEDETSQWPSSNQDGSSSGDRLFTCFD-TNANFVMSGSCS 313 (724)
T ss_pred cceecceEEecCCccccccceeeEecccCCcccCceEeeeecCccccCccccccCcccCceeeeecc-ccceeeEcCCCC
Confidence 37899999997331 4669999999999999999999999877 45599999999999987 667788776665
Q ss_pred CCCCch
Q 016371 80 PGISLP 85 (390)
Q Consensus 80 ~~~~~~ 85 (390)
...+|.
T Consensus 314 ~d~rfa 319 (724)
T KOG3556|consen 314 VDPRFA 319 (724)
T ss_pred cCcccc
Confidence 555554
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.34 E-value=4.2e-08 Score=76.40 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=83.3
Q ss_pred CcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhh
Q 016371 230 PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELV 309 (390)
Q Consensus 230 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 309 (390)
..+..++|++|.+-.+... ...+.....|+..+|++|.+.++++ ..-...|.++.|+|++|.|+++ |..
T Consensus 27 kE~h~ldLssc~lm~i~da-vy~l~~~~el~~i~ls~N~fk~fp~-kft~kf~t~t~lNl~~neisdv--PeE------- 95 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADA-VYMLSKGYELTKISLSDNGFKKFPK-KFTIKFPTATTLNLANNEISDV--PEE------- 95 (177)
T ss_pred HHhhhcccccchhhHHHHH-HHHHhCCceEEEEecccchhhhCCH-HHhhccchhhhhhcchhhhhhc--hHH-------
Confidence 3577888889887654321 1123445678888999999998886 3334567899999999999988 665
Q ss_pred hcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016371 310 SAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 310 ~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+..++.|+.|+++.|.+...+ ..+..+.+|..|+..+|.+.+
T Consensus 96 ---------~Aam~aLr~lNl~~N~l~~~p--~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 96 ---------LAAMPALRSLNLRFNPLNAEP--RVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred ---------HhhhHHhhhcccccCccccch--HHHHHHHhHHHhcCCCCcccc
Confidence 567889999999999988765 556668888889988888765
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.33 E-value=7.4e-07 Score=74.13 Aligned_cols=87 Identities=26% Similarity=0.289 Sum_probs=50.6
Q ss_pred CCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCc
Q 016371 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
.+...++|++|.+.. +. .+..++.|.+|.+..|.|+.+.+. .-..+++|+.|.|.+|.+..+..+.-+..+|+|
T Consensus 42 d~~d~iDLtdNdl~~--l~-~lp~l~rL~tLll~nNrIt~I~p~---L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LD-NLPHLPRLHTLLLNNNRITRIDPD---LDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccccchhh--cc-cCCCccccceEEecCCcceeeccc---hhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 455566666665542 22 225556666666666666666554 122345566666666666665555556666666
Q ss_pred CeEecCCCccccc
Q 016371 285 EQLYLNKNNLNRI 297 (390)
Q Consensus 285 ~~L~L~~n~l~~~ 297 (390)
++|.+-+|+++..
T Consensus 116 ~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 116 EYLTLLGNPVEHK 128 (233)
T ss_pred ceeeecCCchhcc
Confidence 6666666666543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.32 E-value=3.8e-07 Score=78.94 Aligned_cols=112 Identities=23% Similarity=0.259 Sum_probs=81.2
Q ss_pred CCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccc-cCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCC
Q 016371 255 GFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRI-YYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNN 333 (390)
Q Consensus 255 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N 333 (390)
.+..|+.|++.+..++... .+..+|+|+.|.++.|..... +.+.. ...+++|++|++++|
T Consensus 41 ~~~~le~ls~~n~gltt~~---~~P~Lp~LkkL~lsdn~~~~~~~l~vl----------------~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT---NFPKLPKLKKLELSDNYRRVSGGLEVL----------------AEKAPNLKVLNLSGN 101 (260)
T ss_pred cccchhhhhhhccceeecc---cCCCcchhhhhcccCCcccccccceeh----------------hhhCCceeEEeecCC
Confidence 3456677777777776643 366778899999999843322 11222 345699999999999
Q ss_pred CCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCccc
Q 016371 334 MIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEV 388 (390)
Q Consensus 334 ~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i 388 (390)
+|..+..+..+..+++|..|++.+|+.+. -.-.+..++..+++|+.||+..+
T Consensus 102 ki~~lstl~pl~~l~nL~~Ldl~n~~~~~---l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 102 KIKDLSTLRPLKELENLKSLDLFNCSVTN---LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ccccccccchhhhhcchhhhhcccCCccc---cccHHHHHHHHhhhhcccccccc
Confidence 99887766778888899999999998775 23456666778899999988654
No 65
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.31 E-value=4e-07 Score=91.96 Aligned_cols=137 Identities=20% Similarity=0.294 Sum_probs=77.5
Q ss_pred ccccEeecCCcccCCCCc--chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccE
Q 016371 132 EELTSAALPYLGVSSPGA--NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRI 209 (390)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~ 209 (390)
.+|+.|++++...-.... .++..+|.|+.|.+++-.+.. +++...+.++|+|..||+|+.+++.. .+++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~-~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN-DDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc-hhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 456666776654433322 556666777777777766654 24556666777777777777766543 45666777777
Q ss_pred EEeecccCCH-HHHHHHHhcCCcccEEeccCCCccccCC---CCCCccCCCCCccEEEcCCCCCCC
Q 016371 210 LVLNCTGVNW-MQVEILKHSLPALEELHLMGNSISEITP---VSSPIVQGFDNLQLLNLEDNCIAE 271 (390)
Q Consensus 210 L~L~~~~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~l~~L~~L~L~~n~l~~ 271 (390)
|.+.+-.+.. ..+..+ ..+.+|+.||+|......... ...+.-..+|.|+.||.|++.+..
T Consensus 200 L~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7666654432 334444 356777777776654432220 000011235666666666655543
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.26 E-value=9.3e-08 Score=74.48 Aligned_cols=132 Identities=23% Similarity=0.302 Sum_probs=93.3
Q ss_pred ccEEEeecccCC-HHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcC
Q 016371 207 IRILVLNCTGVN-WMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE 285 (390)
Q Consensus 207 L~~L~L~~~~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 285 (390)
+-.++|+.|.+- .......+.....|...+|++|.+...+.. ....++.+++|+|++|.+++.+. .++.++.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~k---ft~kf~t~t~lNl~~neisdvPe--E~Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKK---FTIKFPTATTLNLANNEISDVPE--ELAAMPALR 103 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHH---HhhccchhhhhhcchhhhhhchH--HHhhhHHhh
Confidence 344566666553 123333345556677889999999887765 33445689999999999999885 488999999
Q ss_pred eEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhc-cCCCCCcEEEccCCCCCCCC
Q 016371 286 QLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSL-DSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 286 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~ 364 (390)
.|+++.|.+... |.- +.++.+|-.|+.-+|.+..++. +.+ ..++.|..| .++|+.+..
T Consensus 104 ~lNl~~N~l~~~--p~v----------------i~~L~~l~~Lds~~na~~eid~-dl~~s~~~al~~l--gnepl~~~~ 162 (177)
T KOG4579|consen 104 SLNLRFNPLNAE--PRV----------------IAPLIKLDMLDSPENARAEIDV-DLFYSSLPALIKL--GNEPLGDET 162 (177)
T ss_pred hcccccCccccc--hHH----------------HHHHHhHHHhcCCCCccccCcH-HHhccccHHHHHh--cCCcccccC
Confidence 999999999876 443 4557889999999998887653 333 345555544 677887643
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=1.4e-06 Score=54.89 Aligned_cols=38 Identities=47% Similarity=0.668 Sum_probs=32.5
Q ss_pred CCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016371 323 QNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 323 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
++|++|++++|+|++++ ..++++++|+.|++++|+|++
T Consensus 1 ~~L~~L~l~~N~i~~l~--~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP--PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHG--GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccC--chHhCCCCCCEEEecCCCCCC
Confidence 47999999999999986 458999999999999999985
No 68
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.16 E-value=1.7e-06 Score=89.76 Aligned_cols=154 Identities=25% Similarity=0.270 Sum_probs=109.9
Q ss_pred ccccccEeecCCcccCCCCcchhhhcCcccEEECCCCc--CCChHHHHHHHhcCCCCCEEEccCCC-CCCccCCCCCCCC
Q 016371 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNL--LSDWKDIGAFGEQLPALAVLNLSNNL-MSKEVTGLPQLKS 206 (390)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~i~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~l~~ 206 (390)
+....+.+++-++.+.....+. .+++|++|-+.+|. +.. ..+..+..+|.|++|||++|. +...+..++.+-+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~--~~~~L~tLll~~n~~~l~~--is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSS--ENPKLRTLLLQRNSDWLLE--ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred chhheeEEEEeccchhhccCCC--CCCccceEEEeecchhhhh--cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 4466777777777776554422 24789999998886 332 223557889999999999875 4445557889999
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCch-hhhhcCCCCCcC
Q 016371 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWS-EILKLCQIRSLE 285 (390)
Q Consensus 207 L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~l~~L~ 285 (390)
|++|+++++.+. .+|..++.+..|.+|++..+......+. ....+++|++|.+......... .+..+..+.+|+
T Consensus 597 LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~---i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 597 LRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPG---ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred hhcccccCCCcc--ccchHHHHHHhhheeccccccccccccc---hhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 999999999998 6888889999999999988765444433 4556899999998877633221 224455666666
Q ss_pred eEecCCC
Q 016371 286 QLYLNKN 292 (390)
Q Consensus 286 ~L~L~~n 292 (390)
.|.....
T Consensus 672 ~ls~~~~ 678 (889)
T KOG4658|consen 672 NLSITIS 678 (889)
T ss_pred hheeecc
Confidence 6665443
No 69
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=1.9e-06 Score=54.23 Aligned_cols=41 Identities=34% Similarity=0.526 Sum_probs=33.5
Q ss_pred CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchh
Q 016371 282 RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLAS 340 (390)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~ 340 (390)
++|++|++++|+|+++ |.. +..+++|++|++++|+|++++.
T Consensus 1 ~~L~~L~l~~N~i~~l--~~~----------------l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL--PPE----------------LSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSH--GGH----------------GTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCccc--Cch----------------HhCCCCCCEEEecCCCCCCCcC
Confidence 5799999999999988 443 5789999999999999998764
No 70
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=98.08 E-value=2.9e-06 Score=84.38 Aligned_cols=70 Identities=31% Similarity=0.460 Sum_probs=59.7
Q ss_pred CCCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCCC
Q 016371 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGI 82 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~~~ 82 (390)
|+-..+|.||.+..+.. +.|||+|+..+.+ |||.|+|+||+||+..|++||+|.+ ++|-|+++.++....
T Consensus 1628 pew~~~ge~v~~~~h~t--~v~r~vg~tefq~----gveld~p~gkndgs~gg~qyfrc~p-~~g~~vr~s~~~~~~ 1697 (1714)
T KOG0241|consen 1628 PEWRGFGERVVTVEHTT--NVLRDVGFTEFQG----GVELDDPDGKNDGSAGGLQYFRCLP-NKGGGVRVSDGLHHP 1697 (1714)
T ss_pred chhhhcCceeEEeeccc--ceeeecchhhccC----cccccCCCCCcCccccceeEEeecC-CCCCcccchhhccCc
Confidence 45567899999876644 8999999888776 8999999999999999999999998 899999988775443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=5.2e-07 Score=78.59 Aligned_cols=87 Identities=30% Similarity=0.420 Sum_probs=73.5
Q ss_pred CCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCC
Q 016371 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIR 282 (390)
Q Consensus 203 ~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 282 (390)
.+.+.+.|++.+|.+++ +. +...++.|+.|.|+-|.++.+.+ +..+++|++|.|..|.|.++.++.-+.++|
T Consensus 17 dl~~vkKLNcwg~~L~D--Is-ic~kMp~lEVLsLSvNkIssL~p-----l~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD--IS-ICEKMPLLEVLSLSVNKISSLAP-----LQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHHhhhhcccCCCccH--HH-HHHhcccceeEEeeccccccchh-----HHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 35567888999999874 33 33788999999999999998753 678899999999999999999888899999
Q ss_pred CcCeEecCCCccccc
Q 016371 283 SLEQLYLNKNNLNRI 297 (390)
Q Consensus 283 ~L~~L~L~~n~l~~~ 297 (390)
+|+.|.|..|.-.+.
T Consensus 89 sLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGE 103 (388)
T ss_pred hhhhHhhccCCcccc
Confidence 999999999987654
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.82 E-value=1.2e-05 Score=79.01 Aligned_cols=232 Identities=20% Similarity=0.127 Sum_probs=127.5
Q ss_pred HhccccccEeecCCccc-CCCC-cchhhhcCcccEEECCCC-cCCCh--HHHHHHHhcCCCCCEEEccCCC-CCCccC-C
Q 016371 128 FSKFEELTSAALPYLGV-SSPG-ANIGTIVTNLKELDLTGN-LLSDW--KDIGAFGEQLPALAVLNLSNNL-MSKEVT-G 200 (390)
Q Consensus 128 ~~~l~~L~~L~L~~~~i-~~~~-~~~~~~~~~L~~L~Ls~n-~l~~~--~~i~~~~~~l~~L~~L~ls~n~-l~~~~~-~ 200 (390)
...++.|+.+.+..+.- .... ..+...+++|+.|+++++ ..... .........+++|+.|+++++. ++...- .
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 34478888888887743 3322 155666789999998873 22111 1123345567888899988876 443211 2
Q ss_pred CC-CCCCccEEEeeccc-CCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCC----CCC---
Q 016371 201 LP-QLKSIRILVLNCTG-VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNC----IAE--- 271 (390)
Q Consensus 201 ~~-~l~~L~~L~L~~~~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~----l~~--- 271 (390)
+. .+++|++|.+.+|. ++...+..+...+++|++|++++|....... .......+++|+.|.+.... ++.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~-l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l 342 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSG-LEALLKNCPNLRELKLLSLNGCPSLTDLSL 342 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHH-HHHHHHhCcchhhhhhhhcCCCccHHHHHH
Confidence 22 47889999888777 7888888888888999999998876531110 00112234444443332221 111
Q ss_pred ---------chhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhh
Q 016371 272 ---------WSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASID 342 (390)
Q Consensus 272 ---------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~ 342 (390)
......+..+++|+.+.+..+.+++......+..+..+. .....-...+..++.|+++.+.......+.
T Consensus 343 ~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~--~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~ 420 (482)
T KOG1947|consen 343 SGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT--ESLELRLCRSDSLRVLNLSDCRLVTDKGLR 420 (482)
T ss_pred HHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc--hHHHHHhccCCccceEecccCccccccchH
Confidence 111133456778888888777644432101100000000 000000122233788888888554433444
Q ss_pred hccC-CCCCcEEEccCCCCCC
Q 016371 343 SLDS-FPKLMDIRLSENPVSD 362 (390)
Q Consensus 343 ~l~~-l~~L~~L~l~~n~l~~ 362 (390)
.... +..++.+++.+++...
T Consensus 421 ~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 421 CLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred HHhhhhhccccCCccCccccc
Confidence 4433 6677788888877553
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.81 E-value=1.4e-05 Score=78.50 Aligned_cols=207 Identities=24% Similarity=0.194 Sum_probs=128.4
Q ss_pred chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCC-CC-CCcc----CCCCCCCCccEEEeeccc-CCHHHH
Q 016371 150 NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNN-LM-SKEV----TGLPQLKSIRILVLNCTG-VNWMQV 222 (390)
Q Consensus 150 ~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n-~l-~~~~----~~~~~l~~L~~L~L~~~~-l~~~~~ 222 (390)
.+...++.|+.|.+.++.-..-..+......+++|+.|+++.+ .. .... .....+.+|+.|+++.+. +++..+
T Consensus 182 ~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 182 RLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred HHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 3444469999999998854432235677789999999999873 22 1111 123467899999999988 887788
Q ss_pred HHHHhcCCcccEEeccCCC-ccccCCCCCCccCCCCCccEEEcCCCCCCCchhh-hhcCCCCCcCeEecCCCc----ccc
Q 016371 223 EILKHSLPALEELHLMGNS-ISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI-LKLCQIRSLEQLYLNKNN----LNR 296 (390)
Q Consensus 223 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~L~~n~----l~~ 296 (390)
..+...+++|++|.+..|. +++..- ......++.|++|+++.|.......+ .....+++|+.|.+.... ++.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl--~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~ 339 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGL--VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTD 339 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHH--HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHH
Confidence 8888889999999988887 554331 12345678899999999976533222 223457777776654432 333
Q ss_pred ccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCC--------------cEEEccCCCCCC
Q 016371 297 IYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKL--------------MDIRLSENPVSD 362 (390)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L--------------~~L~l~~n~l~~ 362 (390)
........... ..-.......+++|+.+.+..+.+.+......+..+|.| +.|+++.+....
T Consensus 340 ~~l~~~~~~~~----d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 340 LSLSGLLTLTS----DDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVT 415 (482)
T ss_pred HHHHHhhccCc----hhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCcccc
Confidence 22111000000 000001145678888888888875554322344555554 777777777543
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.78 E-value=4.3e-06 Score=72.47 Aligned_cols=105 Identities=21% Similarity=0.214 Sum_probs=48.5
Q ss_pred CCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhc-CCCCCcCeEecCCCccccccCCCCCchhh
Q 016371 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL-CQIRSLEQLYLNKNNLNRIYYPNNDTIHE 307 (390)
Q Consensus 229 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 307 (390)
+..|+.|++.+..++... .+-.+++|+.|.++.|.+.....+..+ ..+|+|++|+|++|+|+.+..-..
T Consensus 42 ~~~le~ls~~n~gltt~~-----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p----- 111 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP----- 111 (260)
T ss_pred ccchhhhhhhccceeecc-----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-----
Confidence 344444445454444432 123345666666666633322222222 234666666666666654321111
Q ss_pred hhhcccccccCCCCCCCCCEEeCCCCCCCCchhh--hhccCCCCCcEEE
Q 016371 308 LVSAHESHEESYLPFQNLCCLLLGNNMIEDLASI--DSLDSFPKLMDIR 354 (390)
Q Consensus 308 ~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~--~~l~~l~~L~~L~ 354 (390)
...+++|..|++.+|..+..... ..+.-+|+|+.|+
T Consensus 112 -----------l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 112 -----------LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred -----------hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 23445566666666655432111 2233455555554
No 75
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00026 Score=66.62 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=90.3
Q ss_pred HHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCC-CCCCccCCCC
Q 016371 124 IQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNN-LMSKEVTGLP 202 (390)
Q Consensus 124 l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n-~l~~~~~~~~ 202 (390)
+-..+..+.+++.|++++|.+...+ .+.++|+.|.+++|.-- ..+|..+ .++|+.|.+++| .+...+
T Consensus 44 a~~r~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nL--tsLP~~L--P~nLe~L~Ls~Cs~L~sLP---- 111 (426)
T PRK15386 44 ITPQIEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNL--TTLPGSI--PEGLEKLTVCHCPEISGLP---- 111 (426)
T ss_pred HHHHHHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCc--ccCCchh--hhhhhheEccCcccccccc----
Confidence 4445677899999999999888775 23367999999875432 1445433 258999999988 454322
Q ss_pred CCCCccEEEeecccCCHHHHHHHHhcC-CcccEEeccCCCccccCCCCCCccCCC-CCccEEEcCCCCCCCchhhhhcCC
Q 016371 203 QLKSIRILVLNCTGVNWMQVEILKHSL-PALEELHLMGNSISEITPVSSPIVQGF-DNLQLLNLEDNCIAEWSEILKLCQ 280 (390)
Q Consensus 203 ~l~~L~~L~L~~~~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~l~~ 280 (390)
.+|+.|.+..+... .+ ..+ ++|++|.+.+++...... . -..+ ++|++|++++|.....+. .+
T Consensus 112 --~sLe~L~L~~n~~~--~L----~~LPssLk~L~I~~~n~~~~~~-l---p~~LPsSLk~L~Is~c~~i~LP~--~L-- 175 (426)
T PRK15386 112 --ESVRSLEIKGSATD--SI----KNVPNGLTSLSINSYNPENQAR-I---DNLISPSLKTLSLTGCSNIILPE--KL-- 175 (426)
T ss_pred --cccceEEeCCCCCc--cc----ccCcchHhheeccccccccccc-c---ccccCCcccEEEecCCCcccCcc--cc--
Confidence 35788888766543 12 233 368888875533211110 0 0112 579999999887654332 12
Q ss_pred CCCcCeEecCCCccc
Q 016371 281 IRSLEQLYLNKNNLN 295 (390)
Q Consensus 281 l~~L~~L~L~~n~l~ 295 (390)
..+|+.|.++.+...
T Consensus 176 P~SLk~L~ls~n~~~ 190 (426)
T PRK15386 176 PESLQSITLHIEQKT 190 (426)
T ss_pred cccCcEEEecccccc
Confidence 258999999877543
No 76
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.36 E-value=0.00076 Score=63.56 Aligned_cols=134 Identities=16% Similarity=0.192 Sum_probs=81.6
Q ss_pred cCcccEEECCCCcCCChHHHHHHHhcCC-CCCEEEccCC-CCCCccCCCCCCCCccEEEeecc-cCCHHHHHHHHhcCCc
Q 016371 155 VTNLKELDLTGNLLSDWKDIGAFGEQLP-ALAVLNLSNN-LMSKEVTGLPQLKSIRILVLNCT-GVNWMQVEILKHSLPA 231 (390)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~~~i~~~~~~l~-~L~~L~ls~n-~l~~~~~~~~~l~~L~~L~L~~~-~l~~~~~~~~~~~l~~ 231 (390)
|.+++.|++++|.+.. +| .+| +|++|.++++ .++..+..++ ++|+.|.+++| .+. .+ .++
T Consensus 51 ~~~l~~L~Is~c~L~s---LP----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~--sL------P~s 113 (426)
T PRK15386 51 ARASGRLYIKDCDIES---LP----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS--GL------PES 113 (426)
T ss_pred hcCCCEEEeCCCCCcc---cC----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc--cc------ccc
Confidence 5889999999997774 44 244 6999999874 3433322232 57899999887 443 12 246
Q ss_pred ccEEeccCCCccccCCCCCCccCCC-CCccEEEcCCCCCCCchhhhhcCCC-CCcCeEecCCCccccccCCCCCchhhhh
Q 016371 232 LEELHLMGNSISEITPVSSPIVQGF-DNLQLLNLEDNCIAEWSEILKLCQI-RSLEQLYLNKNNLNRIYYPNNDTIHELV 309 (390)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 309 (390)
|+.|++..+....+. .+ ++|+.|.+.++......... ..+ ++|++|++++|....+ |..
T Consensus 114 Le~L~L~~n~~~~L~--------~LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i~L--P~~------- 174 (426)
T PRK15386 114 VRSLEIKGSATDSIK--------NVPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNIIL--PEK------- 174 (426)
T ss_pred cceEEeCCCCCcccc--------cCcchHhheeccccccccccccc--cccCCcccEEEecCCCcccC--ccc-------
Confidence 888888766554322 12 45777777543311100000 122 5899999999886544 332
Q ss_pred hcccccccCCCCCCCCCEEeCCCCCC
Q 016371 310 SAHESHEESYLPFQNLCCLLLGNNMI 335 (390)
Q Consensus 310 ~~~~~~~~~~~~~~~L~~L~L~~N~i 335 (390)
-..+|+.|+++.|..
T Consensus 175 -----------LP~SLk~L~ls~n~~ 189 (426)
T PRK15386 175 -----------LPESLQSITLHIEQK 189 (426)
T ss_pred -----------ccccCcEEEeccccc
Confidence 115788888887643
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.16 E-value=9e-06 Score=78.86 Aligned_cols=192 Identities=26% Similarity=0.256 Sum_probs=90.6
Q ss_pred ccEEECCCCcCCC--hHHHHHHHhcCCCCCEEEccCCCCCCccC-----CCCC-CCCccEEEeecccCCHHH---HHHHH
Q 016371 158 LKELDLTGNLLSD--WKDIGAFGEQLPALAVLNLSNNLMSKEVT-----GLPQ-LKSIRILVLNCTGVNWMQ---VEILK 226 (390)
Q Consensus 158 L~~L~Ls~n~l~~--~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-----~~~~-l~~L~~L~L~~~~l~~~~---~~~~~ 226 (390)
+..|.|.+|.+.+ ...+...+..++.|+.|++++|.+..... .+.. -+.+++|.+..|.++... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4444555555443 23334444455555555555555542210 1111 134555555555554322 22223
Q ss_pred hcCCcccEEeccCCCccccCCC-CCCcc----CCCCCccEEEcCCCCCCCchhh---hhcCCCCC-cCeEecCCCccccc
Q 016371 227 HSLPALEELHLMGNSISEITPV-SSPIV----QGFDNLQLLNLEDNCIAEWSEI---LKLCQIRS-LEQLYLNKNNLNRI 297 (390)
Q Consensus 227 ~~l~~L~~L~L~~n~l~~~~~~-~~~~~----~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~-L~~L~L~~n~l~~~ 297 (390)
.....+++++++.|.+...... .+..+ ....++++|++++|.++..... ..+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 3345566666666655321100 00111 2345666677776666543211 23344444 55566666666654
Q ss_pred cCCCCCchhhhhhcccccccCCCCC-CCCCEEeCCCCCCCCchh---hhhccCCCCCcEEEccCCCCCC
Q 016371 298 YYPNNDTIHELVSAHESHEESYLPF-QNLCCLLLGNNMIEDLAS---IDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
........ +... ..+++++++.|.|++-.. .+.+..+++++.|.++.|++.+
T Consensus 249 g~~~L~~~-------------l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPC-------------LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHH-------------hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 21111000 2222 556777777777764211 1445566677777777777664
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.92 E-value=5.2e-05 Score=73.66 Aligned_cols=182 Identities=24% Similarity=0.247 Sum_probs=129.6
Q ss_pred EEEeChhHHHHHHhccccccEeecCCcccCCCCc-chhhhc----CcccEEECCCCcCCC--hHHHHHHHhcCCCCCEEE
Q 016371 116 IELVGKDKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIV----TNLKELDLTGNLLSD--WKDIGAFGEQLPALAVLN 188 (390)
Q Consensus 116 ~~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~----~~L~~L~Ls~n~l~~--~~~i~~~~~~l~~L~~L~ 188 (390)
+...|.+.+...+.....|..|++++|.+...+. .+...+ +.+++|++..|.+.+ ...+...+.....++.++
T Consensus 99 l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~ 178 (478)
T KOG4308|consen 99 LGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELD 178 (478)
T ss_pred cccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHH
Confidence 4445778889999999999999999999996544 222221 457788998888876 345667777888999999
Q ss_pred ccCCCCCCc-----cCC----CCCCCCccEEEeecccCCHHHHH---HHHhcCCc-ccEEeccCCCccccCC-CCCCccC
Q 016371 189 LSNNLMSKE-----VTG----LPQLKSIRILVLNCTGVNWMQVE---ILKHSLPA-LEELHLMGNSISEITP-VSSPIVQ 254 (390)
Q Consensus 189 ls~n~l~~~-----~~~----~~~l~~L~~L~L~~~~l~~~~~~---~~~~~l~~-L~~L~L~~n~l~~~~~-~~~~~~~ 254 (390)
++.|.+... ... +....++++|.+..|.++..... ..+...+. +.+|++..|.+.+... .....+.
T Consensus 179 l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~ 258 (478)
T KOG4308|consen 179 LSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLS 258 (478)
T ss_pred HHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhc
Confidence 999987432 112 23577899999999988754443 33445555 7779999998875421 0111233
Q ss_pred CC-CCccEEEcCCCCCCCchhh---hhcCCCCCcCeEecCCCccccc
Q 016371 255 GF-DNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 255 ~l-~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~n~l~~~ 297 (390)
.+ ..+++++++.|.++..... ..+..++.++.|.++.|.+.+.
T Consensus 259 ~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 259 VLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred ccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 44 6789999999999875432 4566778999999999987753
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=96.91 E-value=0.00058 Score=65.41 Aligned_cols=94 Identities=23% Similarity=0.175 Sum_probs=60.8
Q ss_pred CCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCC--CCCCchhhhhccCCCCCcEEEccC
Q 016371 280 QIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNN--MIEDLASIDSLDSFPKLMDIRLSE 357 (390)
Q Consensus 280 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N--~i~~~~~~~~l~~l~~L~~L~l~~ 357 (390)
+.|.+..++|++|+|..++.-..+ ....|+|..|+|++| .+.+...+..++ ...|++|-+.|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ssl---------------sq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~G 279 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSL---------------SQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEG 279 (585)
T ss_pred CCcceeeeecccchhhchhhhhHH---------------HHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecC
Confidence 446666677777776665322221 344688999999999 665543334444 45699999999
Q ss_pred CCCCCCCCc-chhhhhhhhhcCCceEecCcccC
Q 016371 358 NPVSDPGRG-GISRFAIIARLGKIKILNGSEVN 389 (390)
Q Consensus 358 n~l~~~~~~-~~~~~~~i~~l~~L~~Ln~s~i~ 389 (390)
||+.+.... +..-..+...+|+|..||+-++.
T Consensus 280 NPlc~tf~~~s~yv~~i~~~FPKL~~LDG~ev~ 312 (585)
T KOG3763|consen 280 NPLCTTFSDRSEYVSAIRELFPKLLRLDGVEVQ 312 (585)
T ss_pred CccccchhhhHHHHHHHHHhcchheeecCcccC
Confidence 999875421 11111334588999999998764
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.53 E-value=0.012 Score=46.47 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=39.0
Q ss_pred cCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhh
Q 016371 228 SLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHE 307 (390)
Q Consensus 228 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 307 (390)
.+.+|+.+.+.. .+..+... .+.++.+|+.+.+..+ +..... ..+..+++|+.+.+.. .+..+. ...
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~---~F~~~~~l~~i~~~~~-~~~i~~-~~F~~~~~l~~i~~~~-~~~~i~-~~~----- 76 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGEN---AFSNCTSLKSINFPNN-LTSIGD-NAFSNCKSLESITFPN-NLKSIG-DNA----- 76 (129)
T ss_dssp T-TT--EEEETS-T--EE-TT---TTTT-TT-SEEEESST-TSCE-T-TTTTT-TT-EEEEETS-TT-EE--TTT-----
T ss_pred CCCCCCEEEECC-CeeEeChh---hccccccccccccccc-ccccce-eeeecccccccccccc-cccccc-ccc-----
Confidence 344555555543 23333322 3445555666665553 444333 3455555566666643 333332 111
Q ss_pred hhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC
Q 016371 308 LVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE 357 (390)
Q Consensus 308 ~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~ 357 (390)
+..+++|+.+++..+ +..++. ..+..+ +|+.+.+..
T Consensus 77 -----------F~~~~~l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 -----------FSNCTNLKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS 112 (129)
T ss_dssp -----------TTT-TTECEEEETTT--BEEHT-TTTTT--T--EEE-TT
T ss_pred -----------ccccccccccccCcc-ccEEch-hhhcCC-CceEEEECC
Confidence 444556666666543 333321 334444 566666554
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.53 E-value=0.0075 Score=47.59 Aligned_cols=122 Identities=11% Similarity=0.184 Sum_probs=53.7
Q ss_pred CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCC
Q 016371 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (390)
Q Consensus 201 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 280 (390)
|..+.+|+.+.+..+ +.. .-...+..+++|+.+.+..+ +..+... .+..+++|+.+.+.+ .+...+. ..+..
T Consensus 8 F~~~~~l~~i~~~~~-~~~-I~~~~F~~~~~l~~i~~~~~-~~~i~~~---~F~~~~~l~~i~~~~-~~~~i~~-~~F~~ 79 (129)
T PF13306_consen 8 FYNCSNLESITFPNT-IKK-IGENAFSNCTSLKSINFPNN-LTSIGDN---AFSNCKSLESITFPN-NLKSIGD-NAFSN 79 (129)
T ss_dssp TTT-TT--EEEETST---E-E-TTTTTT-TT-SEEEESST-TSCE-TT---TTTT-TT-EEEEETS-TT-EE-T-TTTTT
T ss_pred HhCCCCCCEEEECCC-eeE-eChhhccccccccccccccc-cccccee---eeecccccccccccc-ccccccc-ccccc
Confidence 455566777666542 221 12223456667777777664 5555433 466666788888865 4444443 45666
Q ss_pred CCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCc
Q 016371 281 IRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLM 351 (390)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~ 351 (390)
+++|+.+.+..+ ++.+. ... +..+ +|+.+.+.. .+..++. ..+.++++|+
T Consensus 80 ~~~l~~i~~~~~-~~~i~-~~~----------------f~~~-~l~~i~~~~-~~~~i~~-~~F~~~~~l~ 129 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIG-SSS----------------FSNC-NLKEINIPS-NITKIEE-NAFKNCTKLK 129 (129)
T ss_dssp -TTECEEEETTT--BEEH-TTT----------------TTT--T--EEE-TT-B-SS-----GGG------
T ss_pred cccccccccCcc-ccEEc-hhh----------------hcCC-CceEEEECC-CccEECC-ccccccccCC
Confidence 788888888665 55553 222 5555 788887775 3333321 4566666653
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.002 Score=54.09 Aligned_cols=87 Identities=18% Similarity=0.124 Sum_probs=64.6
Q ss_pred CCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCc-cccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCC-C
Q 016371 257 DNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN-LNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNN-M 334 (390)
Q Consensus 257 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N-~ 334 (390)
..++.+|-+++.|....- ..+..++.++.|.+.+|. +.+...... -...++|+.|+|++| +
T Consensus 101 ~~IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~L~~l----------------~~~~~~L~~L~lsgC~r 163 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYFDDWCLERL----------------GGLAPSLQDLDLSGCPR 163 (221)
T ss_pred ceEEEEecCCchHHHHHH-HHHhccchhhhheeccccchhhHHHHHh----------------cccccchheeeccCCCe
Confidence 357889999988877553 678888999999998886 333211111 234689999999999 9
Q ss_pred CCCchhhhhccCCCCCcEEEccCCCCC
Q 016371 335 IEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 335 i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
||+- .+..|.++++|+.|.|.+=+..
T Consensus 164 IT~~-GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 164 ITDG-GLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred echh-HHHHHHHhhhhHHHHhcCchhh
Confidence 9985 4567888999999998876654
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.003 Score=53.02 Aligned_cols=81 Identities=21% Similarity=0.381 Sum_probs=59.0
Q ss_pred CcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCC-CCCCchhhhhccC-CCCCcEEEccCCC-
Q 016371 283 SLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNN-MIEDLASIDSLDS-FPKLMDIRLSENP- 359 (390)
Q Consensus 283 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N-~i~~~~~~~~l~~-l~~L~~L~l~~n~- 359 (390)
.++.++.++..|...+... +..++.|+.|.+.+| .+.+| .++-+.. .++|+.|+|++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~-----------------L~~l~~i~~l~l~~ck~~dD~-~L~~l~~~~~~L~~L~lsgC~r 163 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEH-----------------LRDLRSIKSLSLANCKYFDDW-CLERLGGLAPSLQDLDLSGCPR 163 (221)
T ss_pred eEEEEecCCchHHHHHHHH-----------------HhccchhhhheeccccchhhH-HHHHhcccccchheeeccCCCe
Confidence 4667777777776654221 567889999999999 78888 4566664 7899999999998
Q ss_pred CCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 360 VSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 360 l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|++ ++++ .+.++++|+.|.+..
T Consensus 164 IT~---~GL~---~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 164 ITD---GGLA---CLLKLKNLRRLHLYD 185 (221)
T ss_pred ech---hHHH---HHHHhhhhHHHHhcC
Confidence 665 2333 378888888776543
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.98 E-value=0.016 Score=28.11 Aligned_cols=15 Identities=47% Similarity=0.503 Sum_probs=7.0
Q ss_pred CCCEEeCCCCCCCCc
Q 016371 324 NLCCLLLGNNMIEDL 338 (390)
Q Consensus 324 ~L~~L~L~~N~i~~~ 338 (390)
+|+.|+|++|+|+.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 456666666665543
No 85
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=94.67 E-value=0.38 Score=31.01 Aligned_cols=59 Identities=27% Similarity=0.394 Sum_probs=43.7
Q ss_pred CCCCCEEEeC--CCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeec
Q 016371 9 YKLGQRVHSA--NDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVH 76 (390)
Q Consensus 9 ~~~g~~v~~~--~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~ 76 (390)
++|.|||.+. |.+|+.|+|.-+-++ ..|..+=|..+|-- .|+=||+......|.|+.+.
T Consensus 1 MkvnD~VtVKTDG~~rR~G~ilavE~F--~EG~MYLvaL~dYP-------~GiWFFNE~~~~dG~FVep~ 61 (62)
T PF10781_consen 1 MKVNDRVTVKTDGGPRREGVILAVEPF--NEGTMYLVALEDYP-------AGIWFFNEKDSPDGTFVEPR 61 (62)
T ss_pred CccccEEEEecCCcccccceEEEEeec--cCcEEEEEEcCcCC-------cceEEEecCCCCCcEEeeec
Confidence 4789998886 666777888877544 56888888887532 35778888887889998764
No 86
>PRK10708 hypothetical protein; Provisional
Probab=94.62 E-value=0.35 Score=31.15 Aligned_cols=58 Identities=29% Similarity=0.388 Sum_probs=43.1
Q ss_pred CCCCCEEEeC--CCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeee
Q 016371 9 YKLGQRVHSA--NDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRV 75 (390)
Q Consensus 9 ~~~g~~v~~~--~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~ 75 (390)
++|.|||.+. |.+|+.|+|.-+-++ ..|..+=|..+|-- .|+=||+......|.|+.+
T Consensus 1 MkvnD~VtVKTDG~~rR~G~iLavE~F--~EG~MyLvaL~dYP-------~GiWFFNE~~~~~G~FVep 60 (62)
T PRK10708 1 MKVNDRVTVKTDGGPRRPGVVLAVEEF--SEGTMYLVSLEDYP-------LGIWFFNEAGHQDGIFVEK 60 (62)
T ss_pred CccccEEEEecCCCccccceEEEEeec--cCcEEEEEEcCcCC-------CceEEEeccCCCCceEecc
Confidence 4689998886 666777888877644 45888888877532 3677888887778888876
No 87
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.25 E-value=0.017 Score=30.15 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=10.8
Q ss_pred CCCEEeCCCCCCCCch
Q 016371 324 NLCCLLLGNNMIEDLA 339 (390)
Q Consensus 324 ~L~~L~L~~N~i~~~~ 339 (390)
+|++|||++|+|+.+|
T Consensus 1 ~L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIP 16 (22)
T ss_dssp TESEEEETSSEESEEG
T ss_pred CccEEECCCCcCEeCC
Confidence 4677777777777544
No 88
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.02 E-value=0.041 Score=28.63 Aligned_cols=12 Identities=42% Similarity=0.578 Sum_probs=6.3
Q ss_pred CCEEEccCCCCC
Q 016371 184 LAVLNLSNNLMS 195 (390)
Q Consensus 184 L~~L~ls~n~l~ 195 (390)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555554
No 89
>PTZ00243 ABC transporter; Provisional
Probab=92.81 E-value=0.15 Score=57.34 Aligned_cols=61 Identities=28% Similarity=0.498 Sum_probs=48.8
Q ss_pred CCCCCEEEeCCCCeeeEEEEEeeecC--CCCCeEEEEEecCC--------------CCCCCCEECCEEEEecCCCCc
Q 016371 9 YKLGQRVHSANDARRIGTVKYVGEVQ--GYSGTWLGVDWDYG--------------NGKHDGSINGVRYFQAKSQKS 69 (390)
Q Consensus 9 ~~~g~~v~~~~~~~~~~tv~~~g~~~--~~~~~w~Gve~d~~--------------~g~~~g~~~g~~yf~~~~~~~ 69 (390)
-.||.||-+..|....|+.||+|.+. +.|+.+-||||+-| .+-|+|.+.|.+.|++.....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1560)
T PTZ00243 125 CMVGAEVVSTLDASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNM 201 (1560)
T ss_pred cccccEEEeeccccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCc
Confidence 35899998886666779999999884 47888999999944 136899999999998876443
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=92.53 E-value=0.16 Score=49.19 Aligned_cols=83 Identities=24% Similarity=0.299 Sum_probs=60.9
Q ss_pred hhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCC--CCCCccCCCC--CCCCccEEEeecccCCH------HHH
Q 016371 153 TIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNN--LMSKEVTGLP--QLKSIRILVLNCTGVNW------MQV 222 (390)
Q Consensus 153 ~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n--~l~~~~~~~~--~l~~L~~L~L~~~~l~~------~~~ 222 (390)
...|.+..++|++|.+..++.+......-|+|..|+|++| .+.... ++. +...|++|.+.+|.+.. +-+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 3458899999999999988888888888999999999998 443322 222 44568999999987632 224
Q ss_pred HHHHhcCCcccEEe
Q 016371 223 EILKHSLPALEELH 236 (390)
Q Consensus 223 ~~~~~~l~~L~~L~ 236 (390)
..+...+|+|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 44556778887775
No 91
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.90 E-value=0.0036 Score=53.78 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=56.6
Q ss_pred cCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCC
Q 016371 253 VQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGN 332 (390)
Q Consensus 253 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 332 (390)
+......+.||++.|++.... ..+..++.|..|+++.|.+.-+ |.. +.....+..+++..
T Consensus 38 i~~~kr~tvld~~s~r~vn~~--~n~s~~t~~~rl~~sknq~~~~--~~d----------------~~q~~e~~~~~~~~ 97 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLG--KNFSILTRLVRLDLSKNQIKFL--PKD----------------AKQQRETVNAASHK 97 (326)
T ss_pred hhccceeeeehhhhhHHHhhc--cchHHHHHHHHHhccHhhHhhC--hhh----------------HHHHHHHHHHHhhc
Confidence 444566677777777665433 2344456677777777777665 444 45556677777777
Q ss_pred CCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016371 333 NMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 333 N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
|+.+..| .+....|+++.+++.+|+++
T Consensus 98 n~~~~~p--~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 98 NNHSQQP--KSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cchhhCC--ccccccCCcchhhhccCcch
Confidence 7777655 46667777777777777765
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.37 E-value=0.26 Score=26.62 Aligned_cols=17 Identities=41% Similarity=0.417 Sum_probs=11.6
Q ss_pred CCCCEEeCCCCCCCCch
Q 016371 323 QNLCCLLLGNNMIEDLA 339 (390)
Q Consensus 323 ~~L~~L~L~~N~i~~~~ 339 (390)
++|+.|+|++|+|+.++
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 46677777777777654
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.37 E-value=0.26 Score=26.62 Aligned_cols=17 Identities=41% Similarity=0.417 Sum_probs=11.6
Q ss_pred CCCCEEeCCCCCCCCch
Q 016371 323 QNLCCLLLGNNMIEDLA 339 (390)
Q Consensus 323 ~~L~~L~L~~N~i~~~~ 339 (390)
++|+.|+|++|+|+.++
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 46677777777777654
No 94
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.07 E-value=0.45 Score=25.91 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=12.8
Q ss_pred CCCCEEeCCCCCCCCch
Q 016371 323 QNLCCLLLGNNMIEDLA 339 (390)
Q Consensus 323 ~~L~~L~L~~N~i~~~~ 339 (390)
.+|+.|+|++|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 57888888888887654
No 95
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.97 E-value=0.31 Score=25.76 Aligned_cols=16 Identities=44% Similarity=0.679 Sum_probs=9.2
Q ss_pred cCcccEEECCCCcCCC
Q 016371 155 VTNLKELDLTGNLLSD 170 (390)
Q Consensus 155 ~~~L~~L~Ls~n~l~~ 170 (390)
+++|++|+|++|.+++
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 3667777777777664
No 96
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=85.04 E-value=4.4 Score=26.36 Aligned_cols=43 Identities=35% Similarity=0.642 Sum_probs=34.8
Q ss_pred CCCCCEEEeC-CCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCC
Q 016371 9 YKLGQRVHSA-NDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHD 53 (390)
Q Consensus 9 ~~~g~~v~~~-~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~ 53 (390)
|++||.|+.. |.++ =||.++|+..+.++.|+--.|=+..|.+.
T Consensus 1 f~~GDvV~LKSGGp~--MTV~~v~~~~~~~~~~v~C~WFd~~~~~~ 44 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPR--MTVTEVGPNAGASGGWVECQWFDGHGEQR 44 (53)
T ss_pred CCCCCEEEEccCCCC--eEEEEccccccCCCCeEEEEeCCCCCccc
Confidence 6899999987 4433 89999999988899998888988766543
No 97
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.66 E-value=2.4 Score=23.39 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=12.0
Q ss_pred CCccEEEeecccCCHHHHHHH
Q 016371 205 KSIRILVLNCTGVNWMQVEIL 225 (390)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~ 225 (390)
++|++|+|++|.+.......+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 356666666666665444443
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.07 E-value=1.3 Score=23.94 Aligned_cols=15 Identities=40% Similarity=0.264 Sum_probs=7.8
Q ss_pred CCCCEEeCCCC-CCCC
Q 016371 323 QNLCCLLLGNN-MIED 337 (390)
Q Consensus 323 ~~L~~L~L~~N-~i~~ 337 (390)
++|++|+|++| +|++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 45555555555 3444
No 99
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.57 E-value=1.3 Score=24.05 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=13.0
Q ss_pred CCCCEEeCCCCCCCCch
Q 016371 323 QNLCCLLLGNNMIEDLA 339 (390)
Q Consensus 323 ~~L~~L~L~~N~i~~~~ 339 (390)
++|+.|++++|+++..|
T Consensus 2 ~~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLTSLP 18 (26)
T ss_pred cccceeecCCCccccCc
Confidence 46788888888887766
No 100
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.90 E-value=0.18 Score=43.65 Aligned_cols=87 Identities=17% Similarity=0.089 Sum_probs=58.9
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016371 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+..++..+.|+++.|.+...+..+..+ ..|..||++.|.+. .+|.-+.++..+..+++..|..+..+..+...+.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~-t~~~rl~~sknq~~---~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSIL-TRLVRLDLSKNQIK---FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHH-HHHHHHhccHhhHh---hChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 345566677777777766655533332 66777788777766 45666677777777777777777666567777777
Q ss_pred cEEEeecccCC
Q 016371 208 RILVLNCTGVN 218 (390)
Q Consensus 208 ~~L~L~~~~l~ 218 (390)
+.+++-.+.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 77777777654
No 101
>PF07154 DUF1392: Protein of unknown function (DUF1392); InterPro: IPR009824 This family consists of several hypothetical cyanobacterial proteins of around 150 residues in length, which seem to be specific to Anabaena species. The function of this family is unknown.
Probab=73.48 E-value=4.7 Score=31.83 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=32.9
Q ss_pred CCCCCCCCEEEeCC-CCeeeEEEEEeeecCCCCCeE-EEEEecCCC-CCCC
Q 016371 6 PESYKLGQRVHSAN-DARRIGTVKYVGEVQGYSGTW-LGVDWDYGN-GKHD 53 (390)
Q Consensus 6 ~~~~~~g~~v~~~~-~~~~~~tv~~~g~~~~~~~~w-~Gve~d~~~-g~~~ 53 (390)
.|.|..||||.++- ++. -+.|-+=-+.--++.| ++|||-.|+ ..-.
T Consensus 85 kp~F~LGd~V~~~f~~~~--pkqRlIlGv~lv~~~W~Y~VE~~SPtlse~~ 133 (150)
T PF07154_consen 85 KPAFRLGDRVEFRFYSDG--PKQRLILGVFLVNNSWFYAVEWRSPTLSETP 133 (150)
T ss_pred CCceecCCEEEEEecCCC--CceEEEEEEEEecCceEEEEEEeCCcccccc
Confidence 47899999998862 111 3466666566678888 999999998 5443
No 102
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.83 E-value=34 Score=33.22 Aligned_cols=161 Identities=16% Similarity=-0.090 Sum_probs=86.7
Q ss_pred cccccEeecCCcccCCCCcchhhh---cCcccEEECCCCcCCChHHH-HHHHhcCCCCCEEEccCCCCCCc-----cC--
Q 016371 131 FEELTSAALPYLGVSSPGANIGTI---VTNLKELDLTGNLLSDWKDI-GAFGEQLPALAVLNLSNNLMSKE-----VT-- 199 (390)
Q Consensus 131 l~~L~~L~L~~~~i~~~~~~~~~~---~~~L~~L~Ls~n~l~~~~~i-~~~~~~l~~L~~L~ls~n~l~~~-----~~-- 199 (390)
-..+++++++.|...+..+..... -..++.++.+...+.--..+ +-....-++|+..+++.|..+.. .+
T Consensus 213 ~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~ 292 (553)
T KOG4242|consen 213 RLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAE 292 (553)
T ss_pred cccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccc
Confidence 345778888888887766622222 14567777777665431111 11223455788888887765422 11
Q ss_pred --CCCCCCCccEEEeecccCCHHHHHHHHhcCC-----cccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCc
Q 016371 200 --GLPQLKSIRILVLNCTGVNWMQVEILKHSLP-----ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEW 272 (390)
Q Consensus 200 --~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 272 (390)
.+..-.++ +|++..+....+.++.++-.+. .=-.+++..|...+.... ....+=.++++|++..|.+.+.
T Consensus 293 k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vl--eaci~g~R~q~l~~rdnnldge 369 (553)
T KOG4242|consen 293 KDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVL--EACIFGQRVQVLLQRDNNLDGE 369 (553)
T ss_pred ccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchh--hccccceeeeEeeccccccccc
Confidence 13344566 7888887776655555542221 122455555554432211 1112224588888888877654
Q ss_pred hh-hhhcCCCCCcCeEecCCCcc
Q 016371 273 SE-ILKLCQIRSLEQLYLNKNNL 294 (390)
Q Consensus 273 ~~-~~~l~~l~~L~~L~L~~n~l 294 (390)
.. +..+..-+.++.+.+.+-.-
T Consensus 370 g~~vgk~~~s~s~r~l~agrs~~ 392 (553)
T KOG4242|consen 370 GGAVGKRKQSKSGRILKAGRSGD 392 (553)
T ss_pred cccccceeeccccccccccccCC
Confidence 32 12333456777777766443
No 103
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=66.14 E-value=4 Score=22.17 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.1
Q ss_pred hhhhhhhhcCCceEecCcc
Q 016371 369 SRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 369 ~~~~~i~~l~~L~~Ln~s~ 387 (390)
-+..+++.+|+|+.||...
T Consensus 4 YR~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 4 YREKVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHHHHCCccceecccc
Confidence 3556789999999999764
No 104
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=57.57 E-value=15 Score=28.87 Aligned_cols=20 Identities=45% Similarity=0.936 Sum_probs=12.1
Q ss_pred EEEec--CCCCCC-CC--EECCEEE
Q 016371 42 GVDWD--YGNGKH-DG--SINGVRY 61 (390)
Q Consensus 42 Gve~d--~~~g~~-~g--~~~g~~y 61 (390)
+|.|- ||.|+| +| .++|.+|
T Consensus 106 vIHWTH~dp~~~h~~Gwl~~nG~~Y 130 (131)
T PF11948_consen 106 VIHWTHHDPRGRHPDGWLKHNGQRY 130 (131)
T ss_pred EEEeeccCCCCCCCCeeEEECCEEC
Confidence 34554 555777 44 6677776
No 105
>PHA02146 hypothetical protein
Probab=55.43 E-value=15 Score=25.01 Aligned_cols=46 Identities=17% Similarity=0.388 Sum_probs=31.8
Q ss_pred CCCCCCEEEeCCCCe-------eeEEEEEeeecCCCCCeE-EEEEecCCCCCCC
Q 016371 8 SYKLGQRVHSANDAR-------RIGTVKYVGEVQGYSGTW-LGVDWDYGNGKHD 53 (390)
Q Consensus 8 ~~~~g~~v~~~~~~~-------~~~tv~~~g~~~~~~~~w-~Gve~d~~~g~~~ 53 (390)
+++||...++.+..| ..|+--|+-.+......| +|+.|....|+.+
T Consensus 2 ~iei~kkyrv~da~rf~~ehgi~ng~ef~v~~~d~dgd~~s~~iswng~dg~s~ 55 (86)
T PHA02146 2 QIEIGKKYRVTDAERFMAEHGITNGTEFTVTNIDDDGDLYTYDISWNGRDGKSA 55 (86)
T ss_pred eeeeCceEEeccHHHHHHHhCcCCCcEEEeeccccCCCeEeecccccCccCCcc
Confidence 567777766654322 226677777777777888 8999998877654
No 106
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=48.78 E-value=14 Score=43.59 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=29.8
Q ss_pred eCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCC
Q 016371 329 LLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGR 365 (390)
Q Consensus 329 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 365 (390)
||++|+|+.++. ..|..+++|++|+|++||+.-++.
T Consensus 1 DLSnN~LstLp~-g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEE-GICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccCh-HHhccCCCceEEEeeCCccccccc
Confidence 688999998753 678889999999999999987663
No 107
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=48.14 E-value=13 Score=27.66 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=25.6
Q ss_pred CCCCCCCCEEEeCCCCeeeEEE-------EE---eeecCCCCCeEEEEEe
Q 016371 6 PESYKLGQRVHSANDARRIGTV-------KY---VGEVQGYSGTWLGVDW 45 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv-------~~---~g~~~~~~~~w~Gve~ 45 (390)
|..|++||+|.|..| ++| +| .|.+.+..+.-+||+.
T Consensus 32 l~~y~~Gd~V~I~~d----~sv~kGmPh~~yhGkTG~V~~v~~~A~~V~v 77 (98)
T PRK04306 32 LQEFEEGDKVHIVID----PSVHKGMPHPRFHGKTGTVVGKRGRAYIVEV 77 (98)
T ss_pred HHhccCCCEEEEEec----CceecCCccccccCCCEEEEeecCeEEEEEE
Confidence 467999999999876 334 23 3355566777888887
No 108
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=33.71 E-value=37 Score=18.28 Aligned_cols=13 Identities=46% Similarity=0.626 Sum_probs=7.3
Q ss_pred ccEEECCCCcCCC
Q 016371 158 LKELDLTGNLLSD 170 (390)
Q Consensus 158 L~~L~Ls~n~l~~ 170 (390)
|++|.|....+.+
T Consensus 2 LKtL~L~~v~f~~ 14 (26)
T PF07723_consen 2 LKTLHLDSVVFSD 14 (26)
T ss_pred CeEEEeeEEEECC
Confidence 5556665555544
No 109
>KOG4600 consensus Mitochondrial ribosomal protein MRP7 (L2) [Translation, ribosomal structure and biogenesis]
Probab=32.20 E-value=99 Score=24.39 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=26.5
Q ss_pred CCCCCCCEEEeCCCCe----eeEEEEEeeecCCCCCeEEEEEecCCC
Q 016371 7 ESYKLGQRVHSANDAR----RIGTVKYVGEVQGYSGTWLGVDWDYGN 49 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~----~~~tv~~~g~~~~~~~~w~Gve~d~~~ 49 (390)
..|..|+-|=++.|+. ..|.|||.-.....+-.|+||..+...
T Consensus 70 tkfHPG~nVGiGKDhtifaL~eG~Vrf~k~~~~~~Rk~i~V~~~~~~ 116 (144)
T KOG4600|consen 70 TKFHPGDNVGIGKDHTIFALEEGRVRFEKSKITPPRKWIGVDPRGGL 116 (144)
T ss_pred cccCCCcccccCCcceEEEeeccEEEEEEccCCCCcceEEEeecCCc
Confidence 3456677776666654 126777776554446678887776543
No 110
>PTZ00189 60S ribosomal protein L21; Provisional
Probab=31.50 E-value=25 Score=28.62 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=25.2
Q ss_pred CCCCCCCCEEEeCCCCeeeEEEE-------E---eeecCCCCCeEEEEEecCC
Q 016371 6 PESYKLGQRVHSANDARRIGTVK-------Y---VGEVQGYSGTWLGVDWDYG 48 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~-------~---~g~~~~~~~~w~Gve~d~~ 48 (390)
|..|++||.|.|..| |+|. | .|.+.+..+.-+||...-.
T Consensus 31 l~~yk~GD~VdIk~d----~svqkGMPhk~YHGkTG~V~nv~~~A~gViV~k~ 79 (160)
T PTZ00189 31 LTTFKVGDYVDIVVD----SAVHKGMPYKYYHGRTGRVFNVTPRAVGVIVNKR 79 (160)
T ss_pred HHHccCCCEEEEEec----CCeecCCCcccccCCCeEEEeecCeEEEEEEEEE
Confidence 568999999999876 3443 2 2344455566677766543
No 111
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=29.25 E-value=51 Score=28.02 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=16.0
Q ss_pred CCCCCCCEEEeCCCCeeeEEEEEeeec
Q 016371 7 ESYKLGQRVHSANDARRIGTVKYVGEV 33 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~ 33 (390)
..|++||+|.+++. .|+|..+|..
T Consensus 59 ~pf~vGD~I~i~~~---~G~V~~I~l~ 82 (206)
T PF00924_consen 59 RPFKVGDRIEIGGV---EGRVEEIGLR 82 (206)
T ss_dssp -SS-TT-EEESSS----EEEEEEE-SS
T ss_pred CCccCCCEEEEEEe---ehHHHhcCcc
Confidence 57999999999753 4999999844
No 112
>PF10816 DUF2760: Domain of unknown function (DUF2760); InterPro: IPR021212 This is a bacterial family of uncharacterised proteins.
Probab=28.41 E-value=1.7e+02 Score=22.68 Aligned_cols=44 Identities=25% Similarity=0.449 Sum_probs=30.3
Q ss_pred CCCCEEEeCCCCeeeEEEEEeeecCCCC---Ce-----EEEEEecCCC--CCCCC
Q 016371 10 KLGQRVHSANDARRIGTVKYVGEVQGYS---GT-----WLGVDWDYGN--GKHDG 54 (390)
Q Consensus 10 ~~g~~v~~~~~~~~~~tv~~~g~~~~~~---~~-----w~Gve~d~~~--g~~~g 54 (390)
.-|+||.+..+. ....||.+|.+.+.+ |. |...+..=|. +.||-
T Consensus 63 ~Egsrvtv~~gf-da~~irLtGnV~G~pPf~G~L~H~GWra~~v~LPk~~~~~d~ 116 (125)
T PF10816_consen 63 EEGSRVTVPAGF-DASAIRLTGNVVGEPPFTGTLVHRGWRATEVRLPKLAEGHDA 116 (125)
T ss_pred CCCCeEeccCCC-CccceEEEeeecccCCCceeEeeCCeEeeEEECCCcCCCCCc
Confidence 468999997543 458899999997753 43 7766666554 55543
No 113
>PF08750 CNP1: CNP1-like family; InterPro: IPR014861 This group of proteins are likely to be lipoproteins. CNP1 (cryptic neisserial protein) has been expressed in Escherichia coli and shown to be localised periplasmicly [].
Probab=27.77 E-value=2e+02 Score=22.98 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=26.0
Q ss_pred CCCCC-CCEEEeCCCCeeeEEEEEeeecCCCCC----eEEEEEecCC
Q 016371 7 ESYKL-GQRVHSANDARRIGTVKYVGEVQGYSG----TWLGVDWDYG 48 (390)
Q Consensus 7 ~~~~~-g~~v~~~~~~~~~~tv~~~g~~~~~~~----~w~Gve~d~~ 48 (390)
..|.| ..-|.++.| |+|||+=.+....| .+-|+.|+..
T Consensus 35 ~~f~ID~~Sisvg~D----gvVRY~lv~~S~~Ga~NvsyEGirC~t~ 77 (139)
T PF08750_consen 35 LKFFIDPKSISVGPD----GVVRYTLVVRSPSGARNVSYEGIRCATG 77 (139)
T ss_pred ceEEEchhheEECCC----CcEEEEEEEcCCCCcccceEEeEeecCC
Confidence 34445 344777666 99999987755443 4899999944
No 114
>TIGR02266 gmx_TIGR02266 Myxococcus xanthus paralogous domain TIGR02266. This domain is related to Type IV pilus assembly protein PilZ (Pfam model pfam07238). It is found in at least 12 copies in Myxococcus xanthus DK 1622.
Probab=24.94 E-value=2.7e+02 Score=20.00 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=23.5
Q ss_pred CCCCCCCEEEeC----CCC---eeeEEEEEeeecCCCCCeEEEEEecCCC
Q 016371 7 ESYKLGQRVHSA----NDA---RRIGTVKYVGEVQGYSGTWLGVDWDYGN 49 (390)
Q Consensus 7 ~~~~~g~~v~~~----~~~---~~~~tv~~~g~~~~~~~~w~Gve~d~~~ 49 (390)
..+++|++|.+. ++. .-.|.|.|.-+-......++||++.+..
T Consensus 35 ~~~~~g~~v~l~l~l~~~~~~i~~~g~Vv~~~~~~~~~~~~~Gv~F~~~~ 84 (96)
T TIGR02266 35 KPLAVGTRVELKLTLPGGERPVELKGVVAWVRPAADGGPPGMGVRFEDLD 84 (96)
T ss_pred CCcCCCCEEEEEEEcCCCCeEEEEEEEEEEeCCCCCCCCCeeEEEeccCC
Confidence 567889887665 211 1125566654322111247888887654
No 115
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=24.12 E-value=77 Score=27.48 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=21.2
Q ss_pred CCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccc
Q 016371 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISE 244 (390)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 244 (390)
.+|+.-++++..+....+...-.-+.+++--.|..|++.+
T Consensus 171 a~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNfed 210 (302)
T KOG1665|consen 171 AKLERADLEGSILHCAILREVEMLCANAEGASLKGCNFED 210 (302)
T ss_pred hhhcccccccchhhhhhhhhhhheecccccccccCcCCCC
Confidence 3445555554444333333333445667777777777664
No 116
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.15 E-value=56 Score=38.99 Aligned_cols=34 Identities=26% Similarity=0.230 Sum_probs=27.4
Q ss_pred eccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCc
Q 016371 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEW 272 (390)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 272 (390)
+|++|+|+.++.. .+..+++|+.|+|++|.+.-.
T Consensus 1 DLSnN~LstLp~g---~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEG---ICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChH---HhccCCCceEEEeeCCccccc
Confidence 5788999888765 677788999999999987753
No 117
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=22.00 E-value=1.2e+02 Score=27.74 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=19.4
Q ss_pred CCCCCCCEEEeCCCCeeeEEEEEeeec
Q 016371 7 ESYKLGQRVHSANDARRIGTVKYVGEV 33 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~ 33 (390)
..|+|||+|.+++ ..|+|.-+|..
T Consensus 128 rpf~vGD~I~i~~---~~G~V~~I~~r 151 (286)
T PRK10334 128 RPFRAGEYVDLGG---VAGTVLSVQIF 151 (286)
T ss_pred CCCCCCCEEEECC---EEEEEEEEEeE
Confidence 5799999999964 34999999843
No 118
>PF09191 CD4-extracel: CD4, extracellular; InterPro: IPR015274 This domain adopts an immunoglobulin-like beta-sandwich with seven strands in 2 beta sheets, in a Greek key topology. It is predominantly found in the extracellular portion of CD4 proteins, where it enables interaction with major histocompatibility complex class II antigens []. ; PDB: 1WIQ_B 1WIP_B 1WIO_A 3T0E_E 1CID_A.
Probab=21.30 E-value=2.3e+02 Score=21.25 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=26.7
Q ss_pred CCCCEEEeC-----CCCeeeEEEEEeeecCCCCCeEEEEEecCCC
Q 016371 10 KLGQRVHSA-----NDARRIGTVKYVGEVQGYSGTWLGVDWDYGN 49 (390)
Q Consensus 10 ~~g~~v~~~-----~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~ 49 (390)
+.|+.|... +|+.-.|..||..+-+..++.|+-+.|.+..
T Consensus 10 keGe~vefSFPL~f~dE~L~GEL~WqaegasS~q~WitFsl~n~k 54 (108)
T PF09191_consen 10 KEGEQVEFSFPLNFEDENLSGELRWQAEGASSSQSWITFSLKNKK 54 (108)
T ss_dssp ETCS-EEEE-----SS-SCEEEEEEEESSSSSS--EEEEEEETTE
T ss_pred ccCcEEEEecccccCccccceEEEEEecCCCCCCCcEEEEEeCCe
Confidence 346666554 3333459999998888888999999999873
No 119
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=20.99 E-value=1.6e+02 Score=28.82 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=22.7
Q ss_pred EEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016371 327 CLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 327 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
.+|++.|...+....+.-..-.++++|.+++|.+..
T Consensus 333 rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldg 368 (553)
T KOG4242|consen 333 RLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDG 368 (553)
T ss_pred cCChhhccccccchhhccccceeeeEeecccccccc
Confidence 456666766665433333334468889998887754
No 120
>PLN00190 60S ribosomal protein L21; Provisional
Probab=20.74 E-value=50 Score=26.90 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=26.0
Q ss_pred CCCCCCCCEEEeCCCCeeeEEE-------EEee---ecCCCCCeEEEEEecCCC
Q 016371 6 PESYKLGQRVHSANDARRIGTV-------KYVG---EVQGYSGTWLGVDWDYGN 49 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv-------~~~g---~~~~~~~~w~Gve~d~~~ 49 (390)
|..|++||.|.|..| ++| +|-| .+.+..+.-+||+.....
T Consensus 31 l~~yk~GD~VdIk~~----~svqKGMPhk~YHGkTG~V~nv~~~A~gV~V~K~v 80 (158)
T PLN00190 31 LRTFKVGDYVDIKVN----GAIHKGMPHKFYHGRTGIVWNVTKRAVGVEVNKQV 80 (158)
T ss_pred HHHhcCCCEEEEEec----CCeecCCCcccccCCCeEEEeecCcEEEEEEEEee
Confidence 567999999999866 333 3333 444556667777766443
No 121
>PF13403 Hint_2: Hint domain
Probab=20.73 E-value=1.3e+02 Score=24.24 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=19.9
Q ss_pred CCCCCCCEEEeCCCCeeeEEEEEeeec
Q 016371 7 ESYKLGQRVHSANDARRIGTVKYVGEV 33 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~ 33 (390)
..+++||+|...++ ..-+|+|+|..
T Consensus 19 e~L~~GD~V~T~dg--g~~~V~wig~~ 43 (147)
T PF13403_consen 19 EDLRPGDRVLTRDG--GFQPVRWIGRR 43 (147)
T ss_pred eccCCCCEEEecCC--CEEEEEEEEEE
Confidence 57899999998765 34789999954
No 122
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=20.61 E-value=82 Score=20.50 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=20.8
Q ss_pred CCCCCCCEEEeCCCCeeeEEEEEeeecCCCC--CeEEEEEecCCCCCCCCEE
Q 016371 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYS--GTWLGVDWDYGNGKHDGSI 56 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~--~~w~Gve~d~~~g~~~g~~ 56 (390)
..|+.|+||+..+-+.+.=||.- .++.. ..+=.+.=||..|+.+|++
T Consensus 4 Gpf~~GdrVQlTD~Kgr~~Ti~L---~~G~~fhThrG~i~HDdlIG~~eGsV 52 (54)
T PF14801_consen 4 GPFRAGDRVQLTDPKGRKHTITL---EPGGEFHTHRGAIRHDDLIGRPEGSV 52 (54)
T ss_dssp -S--TT-EEEEEETT--EEEEE-----TT-EEEETTEEEEHHHHTT--TTEE
T ss_pred CCCCCCCEEEEccCCCCeeeEEE---CCCCeEEcCccccchhheecCCCcEE
Confidence 35889999999865443333332 22221 1134456666667777765
No 123
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=20.25 E-value=1.3e+02 Score=22.13 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=9.1
Q ss_pred CCCCCCCCEEEeCC
Q 016371 6 PESYKLGQRVHSAN 19 (390)
Q Consensus 6 ~~~~~~g~~v~~~~ 19 (390)
+.++++||+|.+..
T Consensus 51 ~~~Vk~GD~Vl~~~ 64 (91)
T PRK14533 51 DFDIKVGDKVIFSK 64 (91)
T ss_pred cccccCCCEEEEcc
Confidence 35677777777643
No 124
>PF12701 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC8_A 2VXF_A 2VXE_A.
Probab=20.04 E-value=1e+02 Score=22.89 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=18.4
Q ss_pred CCCCCCCCCEEEeCCCCeeeEEEEEeeecC
Q 016371 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQ 34 (390)
Q Consensus 5 ~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~ 34 (390)
+|..=.+|++|.+... ..|||.|.+.
T Consensus 1 ~m~~~~IGs~ISlisk----~~iRYeG~L~ 26 (96)
T PF12701_consen 1 SMADPYIGSKISLISK----SDIRYEGILY 26 (96)
T ss_dssp --CCCCTTCEEEEEET----TTEEEEEEEE
T ss_pred CccccccCCEEEEEEC----CCcEEEEEEE
Confidence 3666789999998743 2399999774
Done!