Query 016371
Match_columns 390
No_of_seqs 354 out of 3795
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 12:28:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 3.7E-26 1.3E-30 212.0 12.2 231 122-387 69-310 (328)
2 1ogq_A PGIP-2, polygalacturona 99.9 2.8E-27 9.4E-32 218.3 2.7 230 123-387 67-300 (313)
3 2z66_A Variable lymphocyte rec 99.9 6E-26 2.1E-30 208.6 10.6 208 128-362 48-262 (306)
4 3rgz_A Protein brassinosteroid 99.9 2E-25 6.8E-30 230.0 12.3 158 131-295 393-551 (768)
5 3o6n_A APL1; leucine-rich repe 99.9 6.6E-25 2.2E-29 208.6 14.0 238 127-386 88-347 (390)
6 3v47_A TOLL-like receptor 5B a 99.9 1.1E-24 3.7E-29 211.2 15.2 232 125-386 96-403 (455)
7 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-25 4.1E-30 207.3 6.8 222 132-387 50-277 (313)
8 1ozn_A Reticulon 4 receptor; N 99.9 2E-24 6.9E-29 196.4 14.4 218 120-364 22-241 (285)
9 1ozn_A Reticulon 4 receptor; N 99.9 4.9E-24 1.7E-28 193.8 16.6 219 135-387 14-234 (285)
10 3zyj_A Leucine-rich repeat-con 99.9 3E-24 1E-28 207.3 16.0 212 126-364 82-295 (440)
11 2id5_A Lingo-1, leucine rich r 99.9 3.7E-24 1.3E-28 208.8 16.7 231 125-386 73-328 (477)
12 3v47_A TOLL-like receptor 5B a 99.9 6.3E-25 2.1E-29 212.9 10.9 233 127-387 74-380 (455)
13 3zyi_A Leucine-rich repeat-con 99.9 2.7E-24 9.2E-29 208.4 14.6 212 126-364 93-306 (452)
14 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-24 5.3E-29 200.2 12.4 239 126-386 28-270 (317)
15 3oja_A Leucine-rich immune mol 99.9 1.6E-24 5.6E-29 211.5 12.4 214 111-361 9-227 (487)
16 1xku_A Decorin; proteoglycan, 99.9 1.2E-23 4.2E-28 195.3 17.3 229 127-386 71-301 (330)
17 2id5_A Lingo-1, leucine rich r 99.9 4.7E-24 1.6E-28 208.1 14.7 248 126-387 50-305 (477)
18 4fmz_A Internalin; leucine ric 99.9 2.5E-23 8.5E-28 194.5 19.0 238 128-386 84-341 (347)
19 3oja_B Anopheles plasmodium-re 99.9 5.7E-24 2E-28 213.1 15.2 239 127-386 94-353 (597)
20 1p9a_G Platelet glycoprotein I 99.9 9.4E-24 3.2E-28 192.4 15.2 206 128-364 6-211 (290)
21 1wwl_A Monocyte differentiatio 99.9 2.6E-24 8.7E-29 198.3 11.4 209 128-362 91-310 (312)
22 3rgz_A Protein brassinosteroid 99.9 3.1E-24 1.1E-28 221.1 13.2 167 124-297 359-529 (768)
23 4fcg_A Uncharacterized protein 99.9 2.5E-24 8.5E-29 199.7 11.1 220 114-362 86-315 (328)
24 3o6n_A APL1; leucine-rich repe 99.9 7.8E-24 2.7E-28 201.2 14.8 256 114-387 50-327 (390)
25 1xku_A Decorin; proteoglycan, 99.9 6.1E-24 2.1E-28 197.3 12.1 227 125-387 93-328 (330)
26 3zyj_A Leucine-rich repeat-con 99.9 6.6E-24 2.3E-28 204.9 12.5 233 120-387 54-288 (440)
27 4eco_A Uncharacterized protein 99.9 3.5E-24 1.2E-28 216.1 10.3 224 150-387 201-466 (636)
28 2o6q_A Variable lymphocyte rec 99.9 5.6E-23 1.9E-27 185.4 16.9 204 133-364 17-221 (270)
29 4eco_A Uncharacterized protein 99.9 4.6E-24 1.6E-28 215.2 10.7 249 122-386 263-574 (636)
30 3zyi_A Leucine-rich repeat-con 99.9 9.7E-24 3.3E-28 204.5 12.4 233 120-387 65-299 (452)
31 3t6q_A CD180 antigen; protein- 99.9 2.9E-23 9.8E-28 208.5 15.7 246 127-387 273-532 (606)
32 4b6m_A Tubulin-specific chaper 99.9 8.2E-24 2.8E-28 149.0 8.0 75 5-81 2-77 (84)
33 4fmz_A Internalin; leucine ric 99.9 9.4E-23 3.2E-27 190.5 17.8 214 128-361 128-346 (347)
34 3t6q_A CD180 antigen; protein- 99.9 1E-23 3.6E-28 211.7 12.1 252 122-387 291-556 (606)
35 2z0w_A CAP-Gly domain-containi 99.9 5E-24 1.7E-28 155.3 6.8 88 4-94 6-93 (96)
36 1h6u_A Internalin H; cell adhe 99.9 3.8E-23 1.3E-27 190.0 14.4 194 129-362 38-231 (308)
37 2z66_A Variable lymphocyte rec 99.9 1.8E-24 6E-29 198.8 5.4 228 132-387 28-257 (306)
38 4ecn_A Leucine-rich repeat pro 99.9 2.7E-23 9.3E-28 214.2 14.8 249 122-387 505-815 (876)
39 2ft3_A Biglycan; proteoglycan, 99.9 2.6E-23 9E-28 193.2 13.0 229 127-387 73-303 (332)
40 3oja_B Anopheles plasmodium-re 99.9 4.3E-23 1.5E-27 206.8 15.2 242 122-387 64-310 (597)
41 2e3i_A Restin; CAP-Gly, cytopl 99.9 1.7E-23 5.7E-28 149.5 8.7 79 7-88 1-79 (86)
42 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-24 1.1E-28 198.2 6.4 208 125-359 51-273 (317)
43 3vq2_A TLR4, TOLL-like recepto 99.9 8E-24 2.7E-28 212.5 9.4 227 130-387 326-554 (606)
44 3rdv_A CAP-Gly domain-containi 99.9 2.2E-23 7.4E-28 143.8 8.3 69 8-79 2-70 (72)
45 2ca6_A RAN GTPase-activating p 99.9 1.9E-24 6.4E-29 205.2 3.2 174 122-295 22-229 (386)
46 2z80_A TOLL-like receptor 2, v 99.9 9.2E-24 3.1E-28 198.0 7.8 228 127-362 71-315 (353)
47 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-23 6E-28 194.4 8.9 226 125-387 95-329 (332)
48 2z62_A TOLL-like receptor 4, v 99.9 3.9E-23 1.3E-27 187.0 10.7 208 132-364 28-240 (276)
49 2z81_A CD282 antigen, TOLL-lik 99.9 4.1E-23 1.4E-27 204.9 11.6 165 126-296 44-210 (549)
50 1o6v_A Internalin A; bacterial 99.9 2.9E-22 9.8E-27 194.9 17.2 234 128-386 64-339 (466)
51 4glp_A Monocyte differentiatio 99.9 1.4E-23 4.7E-28 193.2 7.2 209 130-362 89-308 (310)
52 4ecn_A Leucine-rich repeat pro 99.9 1.5E-22 5.1E-27 208.7 14.9 244 124-387 481-785 (876)
53 1lpl_A Hypothetical 25.4 kDa p 99.9 2.3E-23 8E-28 151.9 6.3 74 7-81 10-85 (95)
54 3rfs_A Internalin B, repeat mo 99.9 1.7E-22 5.7E-27 182.5 12.8 196 130-361 39-235 (272)
55 3oja_A Leucine-rich immune mol 99.9 1.4E-23 4.8E-28 204.9 5.6 218 125-385 51-269 (487)
56 2z7x_B TOLL-like receptor 1, v 99.9 5.1E-23 1.7E-27 202.9 8.2 109 125-242 38-150 (520)
57 2cp2_A CLIP-115, KIAA0291; mic 99.9 1.6E-22 5.4E-27 146.9 8.6 74 5-81 15-88 (95)
58 3vq2_A TLR4, TOLL-like recepto 99.9 3.3E-23 1.1E-27 208.0 6.8 240 128-387 281-530 (606)
59 2ast_B S-phase kinase-associat 99.9 4.2E-22 1.4E-26 185.2 13.7 234 125-387 61-304 (336)
60 2z80_A TOLL-like receptor 2, v 99.9 2.7E-22 9.1E-27 188.0 12.1 229 130-387 29-286 (353)
61 1wwl_A Monocyte differentiatio 99.9 3.2E-23 1.1E-27 191.0 5.6 201 156-387 95-305 (312)
62 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-21 8.5E-26 187.4 19.0 189 127-362 59-247 (457)
63 2cp3_A CLIP-115, KIAA0291; mic 99.9 2.9E-22 9.9E-27 142.4 8.9 71 6-79 5-75 (84)
64 1ziw_A TOLL-like receptor 3; i 99.9 1E-21 3.6E-26 199.8 16.8 159 132-297 25-186 (680)
65 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-21 7E-26 188.0 17.8 209 128-387 81-295 (457)
66 3rfs_A Internalin B, repeat mo 99.9 8.5E-22 2.9E-26 177.8 14.0 204 131-364 18-221 (272)
67 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.7E-22 1.3E-26 198.7 12.3 88 126-218 70-159 (562)
68 1whh_A Clipr-59; microtubule b 99.9 2.8E-22 9.7E-27 147.1 8.4 73 6-81 23-95 (102)
69 1o6v_A Internalin A; bacterial 99.9 6.1E-21 2.1E-25 185.5 20.3 211 128-386 173-383 (466)
70 2e3h_A Restin; CAP-Gly, cytopl 99.9 3.1E-22 1.1E-26 144.0 8.1 71 8-81 1-71 (90)
71 2z62_A TOLL-like receptor 4, v 99.9 5.3E-22 1.8E-26 179.5 11.7 218 136-387 11-233 (276)
72 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-21 4E-26 193.1 15.2 246 125-387 62-477 (520)
73 2o6q_A Variable lymphocyte rec 99.9 1.8E-21 6.2E-26 175.4 15.1 198 156-387 16-214 (270)
74 2cp0_A Clipr-59 protein, clipr 99.9 3.8E-22 1.3E-26 144.9 8.5 70 7-79 15-84 (95)
75 1ziw_A TOLL-like receptor 3; i 99.9 1E-21 3.5E-26 199.9 14.6 250 126-387 347-618 (680)
76 1whj_A 1700024K14RIK, riken cD 99.9 3.3E-22 1.1E-26 146.7 7.8 71 7-80 23-93 (102)
77 1h6u_A Internalin H; cell adhe 99.9 2.8E-21 9.4E-26 177.6 15.7 202 138-387 25-226 (308)
78 1txq_A Dynactin 1; protein com 99.9 5.4E-22 1.9E-26 144.1 8.3 73 6-80 10-82 (93)
79 1ixd_A Cylindromatosis tumour- 99.9 5E-22 1.7E-26 146.8 8.2 77 7-84 16-93 (104)
80 2coz_A CAP350, centrosome-asso 99.9 7.4E-22 2.5E-26 149.3 8.9 72 5-79 28-99 (122)
81 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.4E-21 2.5E-25 189.3 18.6 245 125-387 93-506 (562)
82 1p9a_G Platelet glycoprotein I 99.9 1.7E-21 5.7E-26 177.5 12.7 194 155-386 9-203 (290)
83 3g06_A SSPH2 (leucine-rich rep 99.9 2.9E-21 9.8E-26 192.9 15.5 112 257-387 181-293 (622)
84 3j0a_A TOLL-like receptor 5; m 99.9 2.1E-22 7.1E-27 209.6 7.4 92 125-218 66-161 (844)
85 3goz_A Leucine-rich repeat-con 99.9 1.5E-22 5.1E-27 190.4 5.7 226 123-361 13-266 (362)
86 1whg_A Tubulin specific chaper 99.9 4.3E-22 1.5E-26 149.4 6.9 74 7-81 31-106 (113)
87 1whk_A 1700024K14RIK, riken cD 99.9 7.8E-22 2.7E-26 142.2 7.5 73 6-80 10-82 (91)
88 2cp5_A Restin; microtubule bin 99.9 9.6E-22 3.3E-26 151.8 8.5 73 6-81 62-134 (141)
89 4g8a_A TOLL-like receptor 4; l 99.9 2.7E-21 9.2E-26 194.7 14.1 115 127-243 71-186 (635)
90 2cow_A Kinesin-like protein KI 99.9 1.3E-21 4.4E-26 143.0 8.4 72 6-80 21-92 (100)
91 1h6t_A Internalin B; cell adhe 99.9 1.2E-21 4.1E-26 178.6 10.2 211 136-389 28-238 (291)
92 2z81_A CD282 antigen, TOLL-lik 99.9 1.6E-20 5.5E-25 186.1 18.9 224 122-386 241-505 (549)
93 2coy_A Dynactin-1; microtubule 99.9 1.7E-21 5.9E-26 145.5 8.6 72 7-80 32-103 (112)
94 2z63_A TOLL-like receptor 4, v 99.8 3E-22 1E-26 199.4 5.9 242 125-386 275-526 (570)
95 2z63_A TOLL-like receptor 4, v 99.8 5.2E-22 1.8E-26 197.7 7.5 211 130-364 323-534 (570)
96 2ca6_A RAN GTPase-activating p 99.8 6.3E-22 2.1E-26 187.8 7.2 246 104-362 34-317 (386)
97 3j0a_A TOLL-like receptor 5; m 99.8 1.8E-21 6.3E-26 202.4 11.2 73 125-198 90-164 (844)
98 3m19_A Variable lymphocyte rec 99.8 8.9E-21 3E-25 169.0 13.4 156 132-297 14-170 (251)
99 2xwt_C Thyrotropin receptor; s 99.8 2.6E-21 9E-26 171.1 9.3 195 133-358 32-236 (239)
100 2cp6_A Restin; microtubule bin 99.8 3.8E-21 1.3E-25 153.0 8.7 72 7-81 37-108 (172)
101 1whl_A Cylindromatosis tumor s 99.8 3.8E-21 1.3E-25 140.8 8.0 74 6-80 5-87 (95)
102 1z7x_W Ribonuclease inhibitor; 99.8 1.8E-21 6E-26 188.9 7.3 264 121-387 45-350 (461)
103 4glp_A Monocyte differentiatio 99.8 6.9E-22 2.4E-26 181.8 4.1 223 133-387 65-303 (310)
104 3m19_A Variable lymphocyte rec 99.8 3.1E-20 1.1E-24 165.5 14.1 177 157-362 15-193 (251)
105 1z7x_W Ribonuclease inhibitor; 99.8 2.3E-21 7.9E-26 188.0 6.7 233 118-362 156-412 (461)
106 1m9s_A Internalin B; cell inva 99.8 9.3E-21 3.2E-25 188.9 10.5 150 130-297 41-190 (605)
107 1jl5_A Outer protein YOPM; leu 99.8 6.4E-20 2.2E-24 177.4 13.1 228 124-387 146-405 (454)
108 3g06_A SSPH2 (leucine-rich rep 99.8 2.9E-19 9.9E-24 178.4 17.7 218 121-387 52-270 (622)
109 2xwt_C Thyrotropin receptor; s 99.8 1.5E-20 5.2E-25 166.2 7.3 195 156-387 31-235 (239)
110 3goz_A Leucine-rich repeat-con 99.8 4.8E-21 1.6E-25 180.1 4.2 237 136-387 2-262 (362)
111 3cvr_A Invasion plasmid antige 99.8 1.4E-19 4.8E-24 178.6 14.2 195 132-377 59-253 (571)
112 2ast_B S-phase kinase-associat 99.8 3.2E-20 1.1E-24 172.4 9.0 225 132-387 47-281 (336)
113 1h6t_A Internalin B; cell adhe 99.8 3.2E-19 1.1E-23 162.4 12.8 174 129-339 43-216 (291)
114 1xeu_A Internalin C; cellular 99.8 3E-20 1E-24 166.7 5.8 168 131-361 18-185 (263)
115 1jl5_A Outer protein YOPM; leu 99.8 7.5E-19 2.6E-23 169.9 15.4 203 133-361 174-409 (454)
116 3e6j_A Variable lymphocyte rec 99.8 1.5E-18 5E-23 152.4 14.9 178 185-388 22-200 (229)
117 1m9s_A Internalin B; cell inva 99.8 1.1E-18 3.9E-23 173.8 15.6 214 133-389 22-235 (605)
118 4ezg_A Putative uncharacterize 99.8 7.8E-19 2.7E-23 150.5 11.0 153 180-362 42-195 (197)
119 4g8a_A TOLL-like receptor 4; l 99.8 1E-18 3.5E-23 175.8 11.7 187 155-364 370-583 (635)
120 1whm_A Cylindromatosis tumor s 99.8 9.7E-19 3.3E-23 124.1 8.0 71 7-78 8-82 (92)
121 2v70_A SLIT-2, SLIT homolog 2 99.8 5.7E-18 2E-22 147.7 13.2 155 185-363 14-168 (220)
122 2v9t_B SLIT homolog 2 protein 99.7 1E-17 3.5E-22 146.1 13.2 114 227-362 53-166 (220)
123 2o6s_A Variable lymphocyte rec 99.7 1.8E-18 6.3E-23 149.4 8.3 169 135-361 10-178 (208)
124 4ay9_X Follicle-stimulating ho 99.7 1.2E-18 4.2E-23 162.9 7.5 229 120-386 20-254 (350)
125 1xeu_A Internalin C; cellular 99.7 1.5E-18 5.1E-23 155.6 7.4 152 127-297 36-187 (263)
126 2o6s_A Variable lymphocyte rec 99.7 3E-18 1E-22 148.0 8.1 153 131-297 27-180 (208)
127 4ay9_X Follicle-stimulating ho 99.7 2.2E-18 7.5E-23 161.1 7.6 216 135-386 12-234 (350)
128 2xot_A Amphoterin-induced prot 99.7 2.1E-18 7.3E-23 161.9 7.5 180 159-363 21-204 (361)
129 3ogk_B Coronatine-insensitive 99.7 1E-18 3.5E-23 174.7 5.2 23 122-144 210-232 (592)
130 3ogk_B Coronatine-insensitive 99.7 5.1E-19 1.8E-23 176.9 1.5 240 120-382 281-542 (592)
131 3cvr_A Invasion plasmid antige 99.7 2E-17 6.9E-22 163.2 12.4 174 156-387 59-239 (571)
132 4ezg_A Putative uncharacterize 99.7 3.1E-17 1E-21 140.5 12.0 154 129-297 41-196 (197)
133 1dce_A Protein (RAB geranylger 99.7 2.5E-19 8.4E-24 177.5 -2.7 127 230-385 441-567 (567)
134 2v9t_B SLIT homolog 2 protein 99.7 4.3E-17 1.5E-21 142.0 9.9 152 159-337 14-166 (220)
135 2xot_A Amphoterin-induced prot 99.7 1.1E-16 3.9E-21 150.1 13.0 172 184-386 20-197 (361)
136 2v70_A SLIT-2, SLIT homolog 2 99.7 9.5E-17 3.3E-21 139.9 10.1 154 135-297 14-168 (220)
137 3e6j_A Variable lymphocyte rec 99.7 1.3E-16 4.4E-21 139.9 10.8 153 134-297 21-174 (229)
138 2p1m_B Transport inhibitor res 99.7 2.6E-17 8.8E-22 164.6 7.1 259 124-387 97-441 (594)
139 2p1m_B Transport inhibitor res 99.7 8.6E-18 2.9E-22 168.0 0.4 228 130-382 287-535 (594)
140 2je0_A Acidic leucine-rich nuc 99.6 5.5E-16 1.9E-20 126.4 9.5 132 228-387 15-149 (149)
141 1a9n_A U2A', U2A'; complex (nu 99.6 1.5E-15 5E-20 127.5 10.8 133 228-388 17-150 (176)
142 1dce_A Protein (RAB geranylger 99.6 2.8E-17 9.4E-22 162.8 -0.7 190 118-330 358-567 (567)
143 2ell_A Acidic leucine-rich nuc 99.6 5.1E-16 1.7E-20 129.2 6.9 137 156-297 24-162 (168)
144 2ell_A Acidic leucine-rich nuc 99.6 4.8E-16 1.6E-20 129.4 6.2 140 180-339 22-163 (168)
145 1ds9_A Outer arm dynein; leuci 99.6 1.7E-17 5.8E-22 142.2 -6.1 170 176-389 12-185 (198)
146 1w8a_A SLIT protein; signaling 99.6 7.8E-15 2.7E-19 124.9 10.4 130 185-337 11-140 (192)
147 3sb4_A Hypothetical leucine ri 99.6 1.7E-14 5.9E-19 133.4 11.9 102 256-384 225-327 (329)
148 2je0_A Acidic leucine-rich nuc 99.6 2.6E-15 8.8E-20 122.3 5.4 131 156-291 17-149 (149)
149 1w8a_A SLIT protein; signaling 99.6 1.1E-14 3.8E-19 124.0 9.4 132 207-363 10-141 (192)
150 2wfh_A SLIT homolog 2 protein 99.5 4.2E-14 1.4E-18 120.4 11.8 128 185-337 13-140 (193)
151 4b8c_D Glucose-repressible alc 99.5 2.8E-15 9.6E-20 152.9 4.5 213 132-361 173-404 (727)
152 2o6r_A Variable lymphocyte rec 99.5 8.9E-14 3E-18 116.6 12.3 111 230-362 28-138 (177)
153 1a9n_A U2A', U2A'; complex (nu 99.5 3.6E-15 1.2E-19 125.1 3.6 109 231-361 43-153 (176)
154 2wfh_A SLIT homolog 2 protein 99.5 3.1E-14 1.1E-18 121.2 8.8 131 207-364 12-142 (193)
155 2o6r_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 115.0 12.0 130 185-338 10-139 (177)
156 3un9_A NLR family member X1; l 99.5 6.1E-15 2.1E-19 138.5 0.5 193 155-361 71-283 (372)
157 3sb4_A Hypothetical leucine ri 99.4 1.7E-14 5.8E-19 133.5 2.1 198 131-355 48-328 (329)
158 3un9_A NLR family member X1; l 99.4 1.3E-14 4.3E-19 136.4 1.0 168 181-361 71-252 (372)
159 4b8c_D Glucose-repressible alc 99.4 1.6E-13 5.3E-18 140.0 8.9 176 156-361 173-354 (727)
160 1ds9_A Outer arm dynein; leuci 99.4 4.4E-16 1.5E-20 133.3 -8.7 116 174-297 40-155 (198)
161 3g39_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 106.4 12.1 108 231-363 10-117 (170)
162 2r9u_A Variable lymphocyte rec 99.4 4.9E-12 1.7E-16 105.7 12.2 107 232-363 14-120 (174)
163 3g39_A Variable lymphocyte rec 99.3 1.1E-11 3.7E-16 103.2 8.9 87 205-296 30-116 (170)
164 2r9u_A Variable lymphocyte rec 99.3 1.4E-11 4.7E-16 102.9 9.0 105 186-297 16-120 (174)
165 2ra8_A Uncharacterized protein 99.2 7.2E-11 2.5E-15 110.0 11.1 210 131-359 106-341 (362)
166 4fdw_A Leucine rich hypothetic 99.1 2.1E-10 7.1E-15 108.7 10.5 196 133-362 158-359 (401)
167 4fdw_A Leucine rich hypothetic 99.1 6.9E-10 2.3E-14 105.1 11.3 202 126-360 174-382 (401)
168 3rw6_A Nuclear RNA export fact 99.1 4E-11 1.4E-15 106.4 2.3 118 256-390 140-263 (267)
169 2ifg_A High affinity nerve gro 99.0 7.4E-10 2.5E-14 102.9 11.0 82 209-297 12-95 (347)
170 2ifg_A High affinity nerve gro 99.0 1.5E-10 5.1E-15 107.6 5.2 105 186-297 12-118 (347)
171 1io0_A Tropomodulin; LRR prote 98.9 2.9E-09 9.9E-14 89.6 8.1 122 122-243 26-164 (185)
172 3e4g_A ATP synthase subunit S, 98.8 2.1E-09 7.2E-14 88.6 4.1 104 257-382 61-171 (176)
173 1io0_A Tropomodulin; LRR prote 98.8 1.5E-09 5E-14 91.5 2.0 129 221-362 27-165 (185)
174 2ra8_A Uncharacterized protein 98.7 1.8E-08 6.3E-13 93.7 8.4 138 154-296 170-321 (362)
175 3rw6_A Nuclear RNA export fact 98.6 1.8E-08 6E-13 89.3 3.2 81 155-236 169-257 (267)
176 3e4g_A ATP synthase subunit S, 98.4 6.3E-08 2.2E-12 79.8 2.1 100 231-351 62-170 (176)
177 4fs7_A Uncharacterized protein 98.4 6.3E-07 2.1E-11 84.6 8.3 202 127-358 157-376 (394)
178 4fs7_A Uncharacterized protein 98.3 1.4E-06 4.9E-11 82.1 9.0 197 150-386 156-374 (394)
179 1pgv_A TMD-1, tropomodulin TMD 98.2 1.2E-06 4.2E-11 73.4 4.1 128 221-361 32-170 (197)
180 4gt6_A Cell surface protein; l 98.1 1E-05 3.5E-10 76.2 10.0 82 128-214 110-191 (394)
181 1pgv_A TMD-1, tropomodulin TMD 98.0 1.1E-05 3.8E-10 67.6 7.8 119 122-241 31-168 (197)
182 4gt6_A Cell surface protein; l 98.0 9.6E-05 3.3E-09 69.5 13.8 219 127-385 132-385 (394)
183 4h09_A Hypothetical leucine ri 97.7 0.00017 6E-09 67.2 11.1 59 319-385 282-340 (379)
184 4h09_A Hypothetical leucine ri 97.3 0.0011 3.7E-08 61.7 10.0 131 201-358 213-343 (379)
185 3rfe_A Platelet glycoprotein I 97.2 0.00074 2.5E-08 52.6 6.4 59 285-364 11-71 (130)
186 3rfe_A Platelet glycoprotein I 96.5 0.0048 1.6E-07 48.0 6.1 55 234-295 12-68 (130)
187 2zkr_q 60S ribosomal protein L 36.2 14 0.00047 29.1 1.5 40 6-49 31-80 (160)
188 1vq8_Q 50S ribosomal protein L 31.3 8.5 0.00029 27.5 -0.4 40 6-49 31-80 (96)
189 2zzd_A Thiocyanate hydrolase s 31.1 16 0.00056 27.4 1.1 15 6-20 34-48 (126)
190 2lz0_A Uncharacterized protein 25.6 90 0.0031 22.1 4.3 39 252-292 15-53 (100)
191 3udc_A Small-conductance mecha 24.5 59 0.002 28.2 3.8 23 7-32 127-149 (285)
192 2qqr_A JMJC domain-containing 23.5 55 0.0019 24.3 2.8 39 6-49 3-43 (118)
193 3dkm_A E3 ubiquitin-protein li 23.1 1.4E+02 0.0049 20.7 4.6 35 8-47 21-64 (89)
194 3n7x_A Capsid protein; icosahe 22.7 13 0.00045 29.9 -0.8 42 6-51 200-249 (329)
195 3p8d_A Medulloblastoma antigen 22.4 1.7E+02 0.0058 19.1 5.1 37 6-47 4-42 (67)
196 2vv5_A MSCS, small-conductance 21.8 59 0.002 28.3 3.2 23 7-32 128-150 (286)
197 2eqm_A PHD finger protein 20-l 21.0 1.4E+02 0.0047 20.7 4.4 43 7-53 18-62 (88)
198 1ugp_B NitrIle hydratase beta 20.9 39 0.0013 28.3 1.7 15 6-20 136-150 (226)
199 3hht_B NitrIle hydratase beta 20.0 38 0.0013 28.4 1.4 14 6-19 139-152 (229)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.7e-26 Score=212.02 Aligned_cols=231 Identities=16% Similarity=0.143 Sum_probs=191.2
Q ss_pred hHHHHHH--hccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC
Q 016371 122 DKIQDKF--SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (390)
Q Consensus 122 ~~l~~~~--~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~ 199 (390)
..++..+ ....+++.|++++|.+...++.+.. +++|++|+|++|.+. .+|..+..+++|++|++++|.++..++
T Consensus 69 ~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~-l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~n~l~~lp~ 144 (328)
T 4fcg_A 69 KATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPLRALPA 144 (328)
T ss_dssp HHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGGG-GTTCSEEEEESSCCC---CCCSCGGGGTTCSEEEEESCCCCCCCG
T ss_pred hhhHHHHhcccccceeEEEccCCCchhcChhhhh-CCCCCEEECCCCCcc---chhHHHhccCCCCEEECCCCccccCcH
Confidence 3344443 3458899999999999988777777 599999999999998 467778999999999999999996655
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHH---------hcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCC
Q 016371 200 GLPQLKSIRILVLNCTGVNWMQVEILK---------HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIA 270 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~~~l~~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 270 (390)
.+..+++|++|++++|.+.. .++..+ ..+++|++|++++|.++.++ ..+..+++|++|+|++|.++
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~-~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp----~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP----ASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCC-CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC----GGGGGCTTCCEEEEESSCCC
T ss_pred HHhcCcCCCEEECCCCCCcc-ccChhHhhccchhhhccCCCCCEEECcCCCcCcch----HhhcCCCCCCEEEccCCCCC
Confidence 78899999999999986654 233322 34899999999999998553 35888999999999999999
Q ss_pred CchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCC
Q 016371 271 EWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKL 350 (390)
Q Consensus 271 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L 350 (390)
+.+. .++.+++|++|+|++|.+.+.. |.. +..+++|++|+|++|++.+. .+..+..+++|
T Consensus 220 ~l~~--~l~~l~~L~~L~Ls~n~~~~~~-p~~----------------~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L 279 (328)
T 4fcg_A 220 ALGP--AIHHLPKLEELDLRGCTALRNY-PPI----------------FGGRAPLKRLILKDCSNLLT-LPLDIHRLTQL 279 (328)
T ss_dssp CCCG--GGGGCTTCCEEECTTCTTCCBC-CCC----------------TTCCCCCCEEECTTCTTCCB-CCTTGGGCTTC
T ss_pred cCch--hhccCCCCCEEECcCCcchhhh-HHH----------------hcCCCCCCEEECCCCCchhh-cchhhhcCCCC
Confidence 8764 5888999999999999987754 554 67889999999999977764 34678899999
Q ss_pred cEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 351 MDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 351 ~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
++|+|++|++. +.+|.. ++++++|+.++++.
T Consensus 280 ~~L~L~~n~~~----~~iP~~--l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 280 EKLDLRGCVNL----SRLPSL--IAQLPANCIILVPP 310 (328)
T ss_dssp CEEECTTCTTC----CCCCGG--GGGSCTTCEEECCG
T ss_pred CEEeCCCCCch----hhccHH--HhhccCceEEeCCH
Confidence 99999999988 467887 89999999997753
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=2.8e-27 Score=218.28 Aligned_cols=230 Identities=18% Similarity=0.190 Sum_probs=188.1
Q ss_pred HHHHHHhccccccEeecCC-cccCCCCc-chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-
Q 016371 123 KIQDKFSKFEELTSAALPY-LGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT- 199 (390)
Q Consensus 123 ~l~~~~~~l~~L~~L~L~~-~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~- 199 (390)
.+|..+.++++|++|++++ |.+.+..+ .+.. +++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..+
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSG--AIPDFLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEE--ECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCC--cCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence 4677889999999999995 88876666 5554 5999999999999985 567788999999999999999986655
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHHhcCC-cccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhc
Q 016371 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLP-ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL 278 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l 278 (390)
.+..+++|++|++++|.+++ .++..+..++ +|++|++++|.+++..+. .+..++ |+.|++++|.+++..+ ..+
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~~L~~L~L~~N~l~~~~~~---~~~~l~-L~~L~Ls~N~l~~~~~-~~~ 217 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRLTGKIPP---TFANLN-LAFVDLSRNMLEGDAS-VLF 217 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEE-ECCGGGGCCCTTCCEEECCSSEEEEECCG---GGGGCC-CSEEECCSSEEEECCG-GGC
T ss_pred HHhcCCCCCeEECcCCcccC-cCCHHHhhhhhcCcEEECcCCeeeccCCh---HHhCCc-ccEEECcCCcccCcCC-HHH
Confidence 68899999999999999875 3444456777 999999999999876544 566666 9999999999987654 678
Q ss_pred CCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCC
Q 016371 279 CQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 279 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n 358 (390)
..+++|+.|+|++|.++... +. +..+++|++|+|++|+|++. .+..+..+++|++|++++|
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~-~~-----------------~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDL-GK-----------------VGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CTTSCCSEEECCSSEECCBG-GG-----------------CCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSS
T ss_pred hcCCCCCEEECCCCceeeec-Cc-----------------ccccCCCCEEECcCCcccCc-CChHHhcCcCCCEEECcCC
Confidence 89999999999999998652 22 45679999999999999853 3367889999999999999
Q ss_pred CCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 359 PVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 359 ~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+++ +.+|. .+.+++|+.|+++.
T Consensus 279 ~l~----~~ip~---~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 279 NLC----GEIPQ---GGNLQRFDVSAYAN 300 (313)
T ss_dssp EEE----EECCC---STTGGGSCGGGTCS
T ss_pred ccc----ccCCC---CccccccChHHhcC
Confidence 998 34555 36788888887653
No 3
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=6e-26 Score=208.58 Aligned_cols=208 Identities=25% Similarity=0.277 Sum_probs=118.2
Q ss_pred HhccccccEeecCCcccCCCC--c-chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC--CCC
Q 016371 128 FSKFEELTSAALPYLGVSSPG--A-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT--GLP 202 (390)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~--~-~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~--~~~ 202 (390)
+.++++|++|++++|.+...+ + .+.. +++|++|++++|.+.. ++..+..+++|++|++++|++....+ .+.
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n~i~~---l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 123 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVIT---MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEECCSCSEEE---EEEEEETCTTCCEEECTTSEEESSTTTTTTT
T ss_pred hhccccCCEEECCCCccCcccCccccccc-ccccCEEECCCCcccc---ChhhcCCCCCCCEEECCCCcccccccchhhh
Confidence 455666666666666655432 1 2222 3666666666666553 33335556666666666666655433 355
Q ss_pred CCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccc-cCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCC
Q 016371 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISE-ITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQI 281 (390)
Q Consensus 203 ~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l 281 (390)
.+++|++|++++|.+.. ..+..+..+++|++|++++|.+++ ..+. .+..+++|+.|++++|.+++..+ ..+..+
T Consensus 124 ~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l 198 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQCQLEQLSP-TAFNSL 198 (306)
T ss_dssp TCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSCCCEECT-TTTTTC
T ss_pred hccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCCccccccchh---HHhhCcCCCEEECCCCCcCCcCH-HHhcCC
Confidence 56666666666665543 222333555666666666666654 2221 35556666666666666665543 345566
Q ss_pred CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCC-CCcEEEccCCCC
Q 016371 282 RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFP-KLMDIRLSENPV 360 (390)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~-~L~~L~l~~n~l 360 (390)
++|++|+|++|.++++. +.. +..+++|++|+|++|+|++.. +..+..++ +|++|++++|++
T Consensus 199 ~~L~~L~L~~N~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 199 SSLQVLNMSHNNFFSLD-TFP----------------YKCLNSLQVLDYSLNHIMTSK-KQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTCCEEECTTSCCSBCC-SGG----------------GTTCTTCCEEECTTSCCCBCS-SSSCCCCCTTCCEEECTTCCE
T ss_pred CCCCEEECCCCccCccC-hhh----------------ccCcccCCEeECCCCCCcccC-HHHHHhhhccCCEEEccCCCe
Confidence 66666666666666542 111 455667777777777776642 34555664 677777777777
Q ss_pred CC
Q 016371 361 SD 362 (390)
Q Consensus 361 ~~ 362 (390)
..
T Consensus 261 ~~ 262 (306)
T 2z66_A 261 AC 262 (306)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=2e-25 Score=230.03 Aligned_cols=158 Identities=24% Similarity=0.235 Sum_probs=76.1
Q ss_pred cccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccE
Q 016371 131 FEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRI 209 (390)
Q Consensus 131 l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~ 209 (390)
+++|++|++++|.+.+..+.....+++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..+ .+..+++|++
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG--TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES--CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC--cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 4445555555555543333222223555555555555543 334445555555555555555554433 3444555555
Q ss_pred EEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEec
Q 016371 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYL 289 (390)
Q Consensus 210 L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 289 (390)
|++++|.+++ .++..+..+++|++|++++|.+++..+. .++.+++|+.|+|++|.+++..+ ..++.+++|+.|++
T Consensus 471 L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 471 LILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPK---WIGRLENLAILKLSNNSFSGNIP-AELGDCRSLIWLDL 545 (768)
T ss_dssp EECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCCEEECC-GGGGGCTTCCEEEC
T ss_pred EEecCCcccC-cCCHHHhcCCCCCEEEccCCccCCcCCh---HHhcCCCCCEEECCCCcccCcCC-HHHcCCCCCCEEEC
Confidence 5555555543 2233334555555555555555543322 34445555555555555543332 34444555555555
Q ss_pred CCCccc
Q 016371 290 NKNNLN 295 (390)
Q Consensus 290 ~~n~l~ 295 (390)
++|.++
T Consensus 546 s~N~l~ 551 (768)
T 3rgz_A 546 NTNLFN 551 (768)
T ss_dssp CSSEEE
T ss_pred CCCccC
Confidence 555544
No 5
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=6.6e-25 Score=208.60 Aligned_cols=238 Identities=18% Similarity=0.175 Sum_probs=115.9
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHH-HHhcCCCCCEEEccCCCCCCccC-CCCCC
Q 016371 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGA-FGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (390)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~-~~~~l~~L~~L~ls~n~l~~~~~-~~~~l 204 (390)
.+..+++|++|++++|.+...++.....+++|++|++++|.+.. +|. .+..+++|++|++++|.+....+ .+..+
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 164 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS---LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc---CCHHHhcCCCCCcEEECCCCccCccChhhccCC
Confidence 34555566666666666655554322233666666666665553 222 23556666666666666655444 35555
Q ss_pred CCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCC-CC------------ccCCCCCccEEEcCCCCCCC
Q 016371 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVS-SP------------IVQGFDNLQLLNLEDNCIAE 271 (390)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~------------~~~~l~~L~~L~L~~n~l~~ 271 (390)
++|++|++++|.++... +..+++|++|++++|.++...... .. .....++|+.|++++|.+++
T Consensus 165 ~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 165 TSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 240 (390)
T ss_dssp TTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC
T ss_pred CCCCEEECCCCcCCccc----cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc
Confidence 66666666666554321 133444444444444333221000 00 00112355666666666655
Q ss_pred chhhhhcCCCCCcCeEecCCCccccccCCCC---CchhhhhhcccccccC----CCCCCCCCEEeCCCCCCCCchhhhhc
Q 016371 272 WSEILKLCQIRSLEQLYLNKNNLNRIYYPNN---DTIHELVSAHESHEES----YLPFQNLCCLLLGNNMIEDLASIDSL 344 (390)
Q Consensus 272 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~L~~L~L~~N~i~~~~~~~~l 344 (390)
.+ .+..+++|++|+|++|.++++. |.. ...++.+.++.+...+ +..+++|++|+|++|+++.++ ..+
T Consensus 241 ~~---~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~ 314 (390)
T 3o6n_A 241 TA---WLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQ 314 (390)
T ss_dssp CG---GGGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGH
T ss_pred cH---HHcCCCCccEEECCCCcCCCcC-hhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecC--ccc
Confidence 32 3555666777777777666553 222 1112222222222211 234556666666666665543 234
Q ss_pred cCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016371 345 DSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 345 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
..+++|++|++++|++.+ ++ ++.+++|+.|+++
T Consensus 315 ~~l~~L~~L~L~~N~i~~-----~~----~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 315 PQFDRLENLYLDHNSIVT-----LK----LSTHHTLKNLTLS 347 (390)
T ss_dssp HHHTTCSEEECCSSCCCC-----CC----CCTTCCCSEEECC
T ss_pred cccCcCCEEECCCCccce-----eC----chhhccCCEEEcC
Confidence 455566666666666553 11 3445566666554
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.1e-24 Score=211.18 Aligned_cols=232 Identities=21% Similarity=0.206 Sum_probs=130.8
Q ss_pred HHHHhccccccEeecCCcccCCCCc--chhhhcCcccEEECCCCcCCChHHHHHH-HhcCCCCCEEEccCCCCCCccC-C
Q 016371 125 QDKFSKFEELTSAALPYLGVSSPGA--NIGTIVTNLKELDLTGNLLSDWKDIGAF-GEQLPALAVLNLSNNLMSKEVT-G 200 (390)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~~i~~~-~~~l~~L~~L~ls~n~l~~~~~-~ 200 (390)
|..+..+++|++|++++|.+.+..+ .....+++|++|++++|.+.. ..|.. +..+++|++|++++|.+.+..+ .
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK--IQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS--CCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc--cCcccccCCCCcccEEeCCCCcccccChhh
Confidence 3345556666666666666654222 112223666666666666654 11222 5566666666666666554433 1
Q ss_pred CC----------------------------------CCCCccEEEeecccCCHHHHHHHHhc------------------
Q 016371 201 LP----------------------------------QLKSIRILVLNCTGVNWMQVEILKHS------------------ 228 (390)
Q Consensus 201 ~~----------------------------------~l~~L~~L~L~~~~l~~~~~~~~~~~------------------ 228 (390)
+. .+++|++|++++|.+.......+...
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 21 22456666666666665333332221
Q ss_pred --------------------CCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEe
Q 016371 229 --------------------LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (390)
Q Consensus 229 --------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 288 (390)
.++|++|++++|.+++..+. .+..+++|+.|+|++|.+++..+ ..+..+++|++|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 329 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS---VFSHFTDLEQLTLAQNEINKIDD-NAFWGLTHLLKLN 329 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT---TTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEE
T ss_pred cccchhhhccCcccccccccccCceEEEecCccccccchh---hcccCCCCCEEECCCCcccccCh-hHhcCcccCCEEE
Confidence 13455555555555554333 45666667777777776666543 4556666777777
Q ss_pred cCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcch
Q 016371 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGI 368 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 368 (390)
|++|.++++. +.. +..+++|++|+|++|+|++.. +..+..+++|++|++++|.+++ +
T Consensus 330 Ls~N~l~~~~-~~~----------------~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-----~ 386 (455)
T 3v47_A 330 LSQNFLGSID-SRM----------------FENLDKLEVLDLSYNHIRALG-DQSFLGLPNLKELALDTNQLKS-----V 386 (455)
T ss_dssp CCSSCCCEEC-GGG----------------GTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSC-----C
T ss_pred CCCCccCCcC-hhH----------------hcCcccCCEEECCCCcccccC-hhhccccccccEEECCCCcccc-----C
Confidence 7777666552 221 455677777777777776652 3556677777777777777764 2
Q ss_pred hhhhhhhhcCCceEecCc
Q 016371 369 SRFAIIARLGKIKILNGS 386 (390)
Q Consensus 369 ~~~~~i~~l~~L~~Ln~s 386 (390)
+.. .++.+++|+.|+++
T Consensus 387 ~~~-~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 387 PDG-IFDRLTSLQKIWLH 403 (455)
T ss_dssp CTT-TTTTCTTCCEEECC
T ss_pred CHh-HhccCCcccEEEcc
Confidence 221 24667777777665
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.2e-25 Score=207.32 Aligned_cols=222 Identities=19% Similarity=0.181 Sum_probs=184.8
Q ss_pred ccccEeecCCcccCC--CCc-chhhhcCcccEEECCC-CcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCC
Q 016371 132 EELTSAALPYLGVSS--PGA-NIGTIVTNLKELDLTG-NLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKS 206 (390)
Q Consensus 132 ~~L~~L~L~~~~i~~--~~~-~~~~~~~~L~~L~Ls~-n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~ 206 (390)
.+++.|+++++.+.+ ..+ .+.. +++|++|++++ |.+.+ .+|..+.++++|++|++++|.+++..+ .+..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVG--PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEES--CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccc--cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 578899999999986 334 5655 59999999995 88876 678889999999999999999986655 6889999
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCC-CccEEEcCCCCCCCchhhhhcCCCCCcC
Q 016371 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFD-NLQLLNLEDNCIAEWSEILKLCQIRSLE 285 (390)
Q Consensus 207 L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 285 (390)
|++|++++|.++. .++..+..+++|++|++++|.+++..+. .+..++ .|+.|++++|.+++..+ ..+..++ |+
T Consensus 127 L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~L~L~~N~l~~~~~-~~~~~l~-L~ 200 (313)
T 1ogq_A 127 LVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRNRLTGKIP-PTFANLN-LA 200 (313)
T ss_dssp CCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSSEEEEECC-GGGGGCC-CS
T ss_pred CCEEeCCCCccCC-cCChHHhcCCCCCeEECcCCcccCcCCH---HHhhhhhcCcEEECcCCeeeccCC-hHHhCCc-cc
Confidence 9999999999875 3455568899999999999999866443 577787 99999999999986544 4566666 99
Q ss_pred eEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCC
Q 016371 286 QLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGR 365 (390)
Q Consensus 286 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 365 (390)
.|++++|.+++.. |.. +..+++|+.|+|++|++++.. ..+..+++|++|++++|.+.
T Consensus 201 ~L~Ls~N~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~--~~~~~l~~L~~L~Ls~N~l~---- 257 (313)
T 1ogq_A 201 FVDLSRNMLEGDA-SVL----------------FGSDKNTQKIHLAKNSLAFDL--GKVGLSKNLNGLDLRNNRIY---- 257 (313)
T ss_dssp EEECCSSEEEECC-GGG----------------CCTTSCCSEEECCSSEECCBG--GGCCCCTTCCEEECCSSCCE----
T ss_pred EEECcCCcccCcC-CHH----------------HhcCCCCCEEECCCCceeeec--CcccccCCCCEEECcCCccc----
Confidence 9999999998763 333 678899999999999998754 34788999999999999998
Q ss_pred cchhhhhhhhhcCCceEecCcc
Q 016371 366 GGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 366 ~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+.+|.. ++.+++|+.|+++.
T Consensus 258 ~~~p~~--l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 258 GTLPQG--LTQLKFLHSLNVSF 277 (313)
T ss_dssp ECCCGG--GGGCTTCCEEECCS
T ss_pred CcCChH--HhcCcCCCEEECcC
Confidence 346766 88999999999874
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2e-24 Score=196.38 Aligned_cols=218 Identities=24% Similarity=0.216 Sum_probs=180.4
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCC-CCCcc
Q 016371 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNL-MSKEV 198 (390)
Q Consensus 120 g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~-l~~~~ 198 (390)
++..+|. ...++|+.|++++|.+...++.....+++|++|++++|.+.. ..+..+..+++|++|++++|. +....
T Consensus 22 ~l~~ip~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 22 GLQAVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR--IDAAAFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp CCSSCCT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred CcccCCc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce--eCHhhcCCccCCCEEeCCCCCCccccC
Confidence 3444543 235689999999999998877444446999999999999986 235678899999999999997 77664
Q ss_pred C-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhh
Q 016371 199 T-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277 (390)
Q Consensus 199 ~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 277 (390)
+ .+..+++|++|++++|.++. ..+..+..+++|++|++++|.++..++. .+..+++|+.|+|++|.++..+. ..
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~ 172 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRISSVPE-RA 172 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCEECT-TT
T ss_pred HHHhcCCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCHh---HhccCCCccEEECCCCcccccCH-HH
Confidence 4 68899999999999999875 3344557899999999999999987654 57889999999999999998765 56
Q ss_pred cCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC
Q 016371 278 LCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE 357 (390)
Q Consensus 278 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~ 357 (390)
+..+++|++|++++|.++++. |.. +..+++|++|++++|+|++.+ .+.+..+++|++|++++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~-~~~----------------~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVH-PHA----------------FRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLND 234 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEEC-TTT----------------TTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCS
T ss_pred hcCccccCEEECCCCcccccC-HhH----------------ccCcccccEeeCCCCcCCcCC-HHHcccCcccCEEeccC
Confidence 888999999999999999874 443 678899999999999999874 35688999999999999
Q ss_pred CCCCCCC
Q 016371 358 NPVSDPG 364 (390)
Q Consensus 358 n~l~~~~ 364 (390)
|++..++
T Consensus 235 N~~~c~~ 241 (285)
T 1ozn_A 235 NPWVCDC 241 (285)
T ss_dssp SCEECSG
T ss_pred CCccCCC
Confidence 9998543
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=4.9e-24 Score=193.80 Aligned_cols=219 Identities=21% Similarity=0.282 Sum_probs=182.8
Q ss_pred cEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEee
Q 016371 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLN 213 (390)
Q Consensus 135 ~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~ 213 (390)
+.++++++.+..++..+ .++|+.|++++|.+..+ .+..+..+++|++|++++|.++...+ .+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHV--PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCcc--CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 57889999988876543 37999999999999862 23567899999999999999988755 68899999999999
Q ss_pred ccc-CCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCC
Q 016371 214 CTG-VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKN 292 (390)
Q Consensus 214 ~~~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n 292 (390)
+|. +.. ..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.++..+. ..++.+++|++|+|++|
T Consensus 89 ~n~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 89 DNAQLRS-VDPATFHGLGRLHTLHLDRCGLQELGPG---LFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp SCTTCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCCCccc-cCHHHhcCCcCCCEEECCCCcCCEECHh---HhhCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCC
Confidence 997 663 2244557899999999999999987654 67889999999999999998775 56888999999999999
Q ss_pred ccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhh
Q 016371 293 NLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFA 372 (390)
Q Consensus 293 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 372 (390)
.++.+. +.. +..+++|++|++++|++++.. +..+..+++|++|++++|.+.+ ..+..
T Consensus 164 ~l~~~~-~~~----------------~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~----~~~~~- 220 (285)
T 1ozn_A 164 RISSVP-ERA----------------FRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSA----LPTEA- 220 (285)
T ss_dssp CCCEEC-TTT----------------TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSC----CCHHH-
T ss_pred cccccC-HHH----------------hcCccccCEEECCCCcccccC-HhHccCcccccEeeCCCCcCCc----CCHHH-
Confidence 999873 222 677899999999999999873 4678899999999999999984 22333
Q ss_pred hhhhcCCceEecCcc
Q 016371 373 IIARLGKIKILNGSE 387 (390)
Q Consensus 373 ~i~~l~~L~~Ln~s~ 387 (390)
++.+++|+.|+++.
T Consensus 221 -~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 221 -LAPLRALQYLRLND 234 (285)
T ss_dssp -HTTCTTCCEEECCS
T ss_pred -cccCcccCEEeccC
Confidence 78899999999874
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=3e-24 Score=207.35 Aligned_cols=212 Identities=21% Similarity=0.204 Sum_probs=141.2
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCC
Q 016371 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (390)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l 204 (390)
..+.++++|++|+|++|.+....+.....+++|++|+|++|.++.+ .+..+..+++|++|++++|.+....+ .+..+
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 159 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI--PNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC--CTTTSCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee--CHhHhhccccCceeeCCCCcccccCHHHhhhC
Confidence 3456777777777777777766653333357777777777777642 12346677777777777777766554 46677
Q ss_pred CCccEEEeeccc-CCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016371 205 KSIRILVLNCTG-VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 205 ~~L~~L~L~~~~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
++|++|++++|. +.. .....+..+++|++|++++|.++.++ .+..+++|+.|+|++|.++...+ ..+..+++
T Consensus 160 ~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~ 232 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSY-ISEGAFEGLSNLRYLNLAMCNLREIP-----NLTPLIKLDELDLSGNHLSAIRP-GSFQGLMH 232 (440)
T ss_dssp TTCCEEECCCCTTCCE-ECTTTTTTCSSCCEEECTTSCCSSCC-----CCTTCSSCCEEECTTSCCCEECT-TTTTTCTT
T ss_pred cccCEeCCCCCCCcce-eCcchhhcccccCeecCCCCcCcccc-----ccCCCcccCEEECCCCccCccCh-hhhccCcc
Confidence 777777777643 321 22223466777777777777777553 25666777777777777776654 56667777
Q ss_pred cCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCC
Q 016371 284 LEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 363 (390)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 363 (390)
|+.|+|++|.|+.+. +.. +..+++|++|+|++|+|+.++ .+.+..+++|+.|+|++||+.-+
T Consensus 233 L~~L~L~~n~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIE-RNA----------------FDNLQSLVEINLAHNNLTLLP-HDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CCEEECTTCCCCEEC-TTS----------------STTCTTCCEEECTTSCCCCCC-TTTTSSCTTCCEEECCSSCEECS
T ss_pred CCEEECCCCceeEEC-hhh----------------hcCCCCCCEEECCCCCCCccC-hhHhccccCCCEEEcCCCCccCC
Confidence 777777777777663 222 566778888888888887764 35566778888888888887654
Q ss_pred C
Q 016371 364 G 364 (390)
Q Consensus 364 ~ 364 (390)
+
T Consensus 295 C 295 (440)
T 3zyj_A 295 C 295 (440)
T ss_dssp S
T ss_pred C
Confidence 4
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=3.7e-24 Score=208.79 Aligned_cols=231 Identities=16% Similarity=0.128 Sum_probs=166.4
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCC
Q 016371 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQ 203 (390)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~ 203 (390)
|..+.++++|++|+|++|.+...++.....+++|++|+|++|.+.. ..+..+..+++|++|++++|.+....+ .+..
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 150 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI--LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEEECCTTCCEECTTSSTT
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc--CChhHccccccCCEEECCCCccceeChhhccC
Confidence 4567888999999999999988877544446999999999999886 345667889999999999999887765 6888
Q ss_pred CCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCc------------------------
Q 016371 204 LKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNL------------------------ 259 (390)
Q Consensus 204 l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L------------------------ 259 (390)
+++|++|++++|.++. ..+..+..+++|+.|++++|.+....+. .+..+++|
T Consensus 151 l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp CTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEECTT---CSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred CCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEeChh---hcccCcccceeeCCCCccccccCcccccCccc
Confidence 9999999999998875 3445568899999999999988876543 34444444
Q ss_pred cEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCch
Q 016371 260 QLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLA 339 (390)
Q Consensus 260 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~ 339 (390)
+.|+|++|.++..+. ..+..+++|+.|+|++|.++.+. +.. +..+++|++|+|++|+++++.
T Consensus 227 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~-~~~----------------~~~l~~L~~L~L~~n~l~~~~ 288 (477)
T 2id5_A 227 TSLSITHCNLTAVPY-LAVRHLVYLRFLNLSYNPISTIE-GSM----------------LHELLRLQEIQLVGGQLAVVE 288 (477)
T ss_dssp SEEEEESSCCCSCCH-HHHTTCTTCCEEECCSSCCCEEC-TTS----------------CTTCTTCCEEECCSSCCSEEC
T ss_pred cEEECcCCcccccCH-HHhcCccccCeeECCCCcCCccC-hhh----------------ccccccCCEEECCCCccceEC
Confidence 445555555555443 34566677777777777776653 222 556677778888877777652
Q ss_pred hhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016371 340 SIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 340 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
+..+..+++|++|+|++|.++. ++.. .++.+++|+.|+++
T Consensus 289 -~~~~~~l~~L~~L~L~~N~l~~-----~~~~-~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 289 -PYAFRGLNYLRVLNVSGNQLTT-----LEES-VFHSVGNLETLILD 328 (477)
T ss_dssp -TTTBTTCTTCCEEECCSSCCSC-----CCGG-GBSCGGGCCEEECC
T ss_pred -HHHhcCcccCCEEECCCCcCce-----eCHh-HcCCCcccCEEEcc
Confidence 3567777778888888877764 2221 25667777777765
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=6.3e-25 Score=212.88 Aligned_cols=233 Identities=21% Similarity=0.195 Sum_probs=129.0
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHH--HhcCCCCCEEEccCCCCCCccCC--CC
Q 016371 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAF--GEQLPALAVLNLSNNLMSKEVTG--LP 202 (390)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~--~~~l~~L~~L~ls~n~l~~~~~~--~~ 202 (390)
.+..+++|++|++++|.+....+.....+++|++|++++|.+.+ .++.. +..+++|++|++++|.+....+. +.
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 151 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG--AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBT--HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCc--cccCcccccCcccCCEEECCCCccCccCcccccC
Confidence 34556666666666666655544222223666666666666654 33333 55566666666666666555442 45
Q ss_pred CCCCccEEEeecccCCHHHHHHHHhc----------------------------------CCcccEEeccCCCccccCCC
Q 016371 203 QLKSIRILVLNCTGVNWMQVEILKHS----------------------------------LPALEELHLMGNSISEITPV 248 (390)
Q Consensus 203 ~l~~L~~L~L~~~~l~~~~~~~~~~~----------------------------------l~~L~~L~L~~n~l~~~~~~ 248 (390)
.+++|++|++++|.+.... +..+.. +++|++|++++|.+++..+.
T Consensus 152 ~l~~L~~L~L~~n~l~~~~-~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSIC-EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp GCTTCCEEECTTCCBSCCC-TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred CCCcccEEeCCCCcccccC-hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence 5666666666666554311 111111 12344444444333211000
Q ss_pred ----------------------------------CCCccC--CCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCC
Q 016371 249 ----------------------------------SSPIVQ--GFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKN 292 (390)
Q Consensus 249 ----------------------------------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n 292 (390)
....+. ..++|+.|++++|.+++..+ ..++.+++|++|+|++|
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQN 309 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTS
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch-hhcccCCCCCEEECCCC
Confidence 000000 01234444444444443322 33444555555555555
Q ss_pred ccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhh
Q 016371 293 NLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFA 372 (390)
Q Consensus 293 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 372 (390)
.++++. |. .+..+++|++|+|++|++++.+ +..+..+++|++|++++|.+.. ..+..
T Consensus 310 ~l~~~~-~~----------------~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~----~~~~~- 366 (455)
T 3v47_A 310 EINKID-DN----------------AFWGLTHLLKLNLSQNFLGSID-SRMFENLDKLEVLDLSYNHIRA----LGDQS- 366 (455)
T ss_dssp CCCEEC-TT----------------TTTTCTTCCEEECCSSCCCEEC-GGGGTTCTTCCEEECCSSCCCE----ECTTT-
T ss_pred cccccC-hh----------------HhcCcccCCEEECCCCccCCcC-hhHhcCcccCCEEECCCCcccc----cChhh-
Confidence 555442 22 2567899999999999998763 3678889999999999999973 33444
Q ss_pred hhhhcCCceEecCcc
Q 016371 373 IIARLGKIKILNGSE 387 (390)
Q Consensus 373 ~i~~l~~L~~Ln~s~ 387 (390)
++.+++|+.|+++.
T Consensus 367 -~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 367 -FLGLPNLKELALDT 380 (455)
T ss_dssp -TTTCTTCCEEECCS
T ss_pred -ccccccccEEECCC
Confidence 78899999998864
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2.7e-24 Score=208.40 Aligned_cols=212 Identities=21% Similarity=0.199 Sum_probs=129.6
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCC
Q 016371 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (390)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l 204 (390)
..+.++++|+.|+|++|.+....+.....+++|++|+|++|.++.+ .+..+..+++|++|++++|.+....+ .+..+
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 170 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI--PSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC--CTTTSSSCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc--ChhhhcccCCCCEEECCCCCcceeCHhHHhcC
Confidence 3455666666777766666665543333346677777776666642 12335566667777777666665544 45566
Q ss_pred CCccEEEeecc-cCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016371 205 KSIRILVLNCT-GVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 205 ~~L~~L~L~~~-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
++|++|++++| .+.. .....+..+++|++|++++|.+++.+ .+..+++|+.|+|++|.+++..+ ..+..+++
T Consensus 171 ~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~ 243 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEY-ISEGAFEGLFNLKYLNLGMCNIKDMP-----NLTPLVGLEELEMSGNHFPEIRP-GSFHGLSS 243 (452)
T ss_dssp TTCCEEECCCCTTCCE-ECTTTTTTCTTCCEEECTTSCCSSCC-----CCTTCTTCCEEECTTSCCSEECG-GGGTTCTT
T ss_pred CcccEEeCCCCCCccc-cChhhccCCCCCCEEECCCCcccccc-----cccccccccEEECcCCcCcccCc-ccccCccC
Confidence 66777766663 3321 12223355666777777777666543 24566667777777777666544 45666677
Q ss_pred cCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCC
Q 016371 284 LEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 363 (390)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 363 (390)
|+.|+|++|.++.+. +.. +..+++|+.|+|++|+|++.+ .+.+..+++|++|+|++||+.-+
T Consensus 244 L~~L~L~~n~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 244 LKKLWVMNSQVSLIE-RNA----------------FDGLASLVELNLAHNNLSSLP-HDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CCEEECTTSCCCEEC-TTT----------------TTTCTTCCEEECCSSCCSCCC-TTSSTTCTTCCEEECCSSCEECS
T ss_pred CCEEEeCCCcCceEC-HHH----------------hcCCCCCCEEECCCCcCCccC-hHHhccccCCCEEEccCCCcCCC
Confidence 777777777776653 222 556677777777777777653 24556677777777777777654
Q ss_pred C
Q 016371 364 G 364 (390)
Q Consensus 364 ~ 364 (390)
+
T Consensus 306 C 306 (452)
T 3zyi_A 306 C 306 (452)
T ss_dssp T
T ss_pred C
Confidence 4
No 14
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.6e-24 Score=200.21 Aligned_cols=239 Identities=17% Similarity=0.111 Sum_probs=144.2
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCC
Q 016371 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLK 205 (390)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~ 205 (390)
..+..+++|++|++++|.+....+.....+++|++|+|++|.+.+.. . +..+++|++|++++|.+++.. ..+
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~-~~~l~~L~~L~Ls~n~l~~l~----~~~ 99 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---D-LESLSTLRTLDLNNNYVQELL----VGP 99 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---E-ETTCTTCCEEECCSSEEEEEE----ECT
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch---h-hhhcCCCCEEECcCCcccccc----CCC
Confidence 34456678899999999888877633344588999999998887522 2 678888888888888876543 336
Q ss_pred CccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcC
Q 016371 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE 285 (390)
Q Consensus 206 ~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 285 (390)
+|++|++++|.++.... ..+++|++|++++|.+++..+. .+..+++|+.|+|++|.+++.........+++|+
T Consensus 100 ~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 100 SIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp TCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGB---CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccch---hhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence 67777777776653211 3456677777777777665443 4555667777777777776654322223566777
Q ss_pred eEecCCCccccccCCCCCchhhhhhccccccc----CCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016371 286 QLYLNKNNLNRIYYPNNDTIHELVSAHESHEE----SYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 286 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
+|+|++|.++.+........++.+.++.|... .+..+++|++|+|++|+|+.++ ..+..+++|+.|++++|++.
T Consensus 173 ~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCCCB
T ss_pred EEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh--hHhhcCCCCCEEEccCCCcc
Confidence 77777777666521111222222222222221 1344566666666666666543 34556666666666666665
Q ss_pred CCCCcchhhhhhhhhcCCceEecCc
Q 016371 362 DPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 362 ~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
. +..+.+ ++++++|+.|+++
T Consensus 251 ~---~~~~~~--~~~~~~L~~l~l~ 270 (317)
T 3o53_A 251 C---GTLRDF--FSKNQRVQTVAKQ 270 (317)
T ss_dssp H---HHHHHH--HHTCHHHHHHHHH
T ss_pred C---cCHHHH--HhccccceEEECC
Confidence 2 123443 5556666555543
No 15
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.6e-24 Score=211.55 Aligned_cols=214 Identities=21% Similarity=0.208 Sum_probs=139.9
Q ss_pred CcceEEEEeChhHHHHHHhccc----cccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCE
Q 016371 111 NKHVSIELVGKDKIQDKFSKFE----ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAV 186 (390)
Q Consensus 111 ~~~~~~~~~g~~~l~~~~~~l~----~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~ 186 (390)
+....+..+....+|..+..+. +|+.|+|++|.+...++.....+++|++|+|++|.+++. .| +..+++|++
T Consensus 9 g~~~~~~~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~--l~~l~~L~~ 84 (487)
T 3oja_A 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET--LD--LESLSTLRT 84 (487)
T ss_dssp TTEEEEESCCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE--EE--CTTCTTCCE
T ss_pred CceeecccCchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC--cc--cccCCCCCE
Confidence 3444455555566777665554 899999999999988773334459999999999998862 22 778899999
Q ss_pred EEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCC
Q 016371 187 LNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLED 266 (390)
Q Consensus 187 L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~ 266 (390)
|++++|.+++.++ .++|++|++++|.++.... ..+++|++|++++|.+++..+. .++.+++|+.|+|++
T Consensus 85 L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 85 LDLNNNYVQELLV----GPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKL 153 (487)
T ss_dssp EECCSSEEEEEEE----CTTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGB---CGGGGSSEEEEECTT
T ss_pred EEecCCcCCCCCC----CCCcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCch---hhcCCCCCCEEECCC
Confidence 9999998875432 3677888888877764211 3467778888888877776543 456677778888888
Q ss_pred CCCCCchhhhhcC-CCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhcc
Q 016371 267 NCIAEWSEILKLC-QIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLD 345 (390)
Q Consensus 267 n~l~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~ 345 (390)
|.+++..+ ..+. .+++|+.|+|++|.|+++. .. ..+++|+.|+|++|.|++++ ..+.
T Consensus 154 N~l~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~--~~-----------------~~l~~L~~L~Ls~N~l~~~~--~~~~ 211 (487)
T 3oja_A 154 NEIDTVNF-AELAASSDTLEHLNLQYNFIYDVK--GQ-----------------VVFAKLKTLDLSSNKLAFMG--PEFQ 211 (487)
T ss_dssp SCCCEEEG-GGGGGGTTTCCEEECTTSCCCEEE--CC-----------------CCCTTCCEEECCSSCCCEEC--GGGG
T ss_pred CCCCCcCh-HHHhhhCCcccEEecCCCcccccc--cc-----------------ccCCCCCEEECCCCCCCCCC--HhHc
Confidence 87776554 3333 5777778888877777762 21 22444555555555554432 2244
Q ss_pred CCCCCcEEEccCCCCC
Q 016371 346 SFPKLMDIRLSENPVS 361 (390)
Q Consensus 346 ~l~~L~~L~l~~n~l~ 361 (390)
.+++|+.|++++|.|+
T Consensus 212 ~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 212 SAAGVTWISLRNNKLV 227 (487)
T ss_dssp GGTTCSEEECTTSCCC
T ss_pred CCCCccEEEecCCcCc
Confidence 4444555555555444
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=1.2e-23 Score=195.30 Aligned_cols=229 Identities=17% Similarity=0.145 Sum_probs=145.4
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCC
Q 016371 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLK 205 (390)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~ 205 (390)
.+.++++|++|++++|.+....+.....+++|++|++++|.+.. +|..+ .++|++|++++|.+....+ .+..++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~ 145 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE---LPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB---CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCT
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc---cChhh--cccccEEECCCCcccccCHhHhcCCc
Confidence 45666777777777777666644222234677777777776663 22222 2567777777776665544 356667
Q ss_pred CccEEEeecccCCHH-HHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCc
Q 016371 206 SIRILVLNCTGVNWM-QVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 206 ~L~~L~L~~~~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
+|++|++++|.+... ..+..+..+++|++|++++|.++.++.. + .++|+.|++++|.+++..+ ..+..+++|
T Consensus 146 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~----~--~~~L~~L~l~~n~l~~~~~-~~~~~l~~L 218 (330)
T 1xku_A 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG----L--PPSLTELHLDGNKITKVDA-ASLKGLNNL 218 (330)
T ss_dssp TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS----C--CTTCSEEECTTSCCCEECT-GGGTTCTTC
T ss_pred cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc----c--cccCCEEECCCCcCCccCH-HHhcCCCCC
Confidence 777777777766421 1223345667777777777777665432 1 2677777777777776543 456777778
Q ss_pred CeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016371 285 EQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 285 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
++|+|++|.++++. +.. +..+++|++|+|++|+|+.++ ..+..+++|++|++++|+|+...
T Consensus 219 ~~L~Ls~n~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 219 AKLGLSFNSISAVD-NGS----------------LANTPHLRELHLNNNKLVKVP--GGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp CEEECCSSCCCEEC-TTT----------------GGGSTTCCEEECCSSCCSSCC--TTTTTCSSCCEEECCSSCCCCCC
T ss_pred CEEECCCCcCceeC-hhh----------------ccCCCCCCEEECCCCcCccCC--hhhccCCCcCEEECCCCcCCccC
Confidence 88888887777763 222 566788999999999988765 56788899999999999988643
Q ss_pred CcchhhhhhhhhcCCceEecCc
Q 016371 365 RGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 365 ~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
.............+.|+.|+++
T Consensus 280 ~~~f~~~~~~~~~~~l~~l~l~ 301 (330)
T 1xku_A 280 SNDFCPPGYNTKKASYSGVSLF 301 (330)
T ss_dssp TTSSSCSSCCTTSCCCSEEECC
T ss_pred hhhcCCcccccccccccceEee
Confidence 2222111112235677777665
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=4.7e-24 Score=208.07 Aligned_cols=248 Identities=19% Similarity=0.151 Sum_probs=168.8
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCC
Q 016371 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (390)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l 204 (390)
..+.++++|++|+|++|.+....+.....+++|++|+|++|.+..+. +..+.++++|++|++++|.+....+ .+..+
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 127 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP--LGVFTGLSNLTKLDISENKIVILLDYMFQDL 127 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC--TTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC--cccccCCCCCCEEECCCCccccCChhHcccc
Confidence 45677778888888888777765533333578888888888777421 2345677888888888887776655 56777
Q ss_pred CCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCc
Q 016371 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
++|++|++++|.+.. ..+..+..+++|++|++++|.++..+.. .+..+++|+.|+|++|.+..... ..+..+++|
T Consensus 128 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L 202 (477)
T 2id5_A 128 YNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIPTE---ALSHLHGLIVLRLRHLNINAIRD-YSFKRLYRL 202 (477)
T ss_dssp TTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSSCCHH---HHTTCTTCCEEEEESCCCCEECT-TCSCSCTTC
T ss_pred ccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcccChh---HhcccCCCcEEeCCCCcCcEeCh-hhcccCccc
Confidence 888888888877764 2233346677888888888877766533 46677788888888887776654 456677777
Q ss_pred CeEecCCCccccccCCCCCc--hhhhhhcccccccC-----CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC
Q 016371 285 EQLYLNKNNLNRIYYPNNDT--IHELVSAHESHEES-----YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE 357 (390)
Q Consensus 285 ~~L~L~~n~l~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~ 357 (390)
+.|++++|.+.+...+.... .++.+.++.+.... +..+++|+.|+|++|+|++++ ...+..+++|++|+|++
T Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-GSMLHELLRLQEIQLVG 281 (477)
T ss_dssp CEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC-TTSCTTCTTCCEEECCS
T ss_pred ceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC-hhhccccccCCEEECCC
Confidence 77777776654432222111 23344444444332 346788999999999888764 35677888999999999
Q ss_pred CCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 358 NPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 358 n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|.+.. ..+.. ++.+++|+.|+++.
T Consensus 282 n~l~~----~~~~~--~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 282 GQLAV----VEPYA--FRGLNYLRVLNVSG 305 (477)
T ss_dssp SCCSE----ECTTT--BTTCTTCCEEECCS
T ss_pred Cccce----ECHHH--hcCcccCCEEECCC
Confidence 98874 23443 77889999998874
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.5e-23 Score=194.48 Aligned_cols=238 Identities=22% Similarity=0.297 Sum_probs=125.6
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016371 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+..+++|++|++++|.+...+ .+.. +++|++|++++|.+..+. . +..+++|++|++++|......+.+..+++|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~-~~~~-l~~L~~L~l~~n~i~~~~---~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L 157 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS-ALQN-LTNLRELYLNEDNISDIS---P-LANLTKMYSLNLGANHNLSDLSPLSNMTGL 157 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGTT-CTTCSEEECTTSCCCCCG---G-GTTCTTCCEEECTTCTTCCCCGGGTTCTTC
T ss_pred hhcCCcCCEEEccCCcccCch-HHcC-CCcCCEEECcCCcccCch---h-hccCCceeEEECCCCCCcccccchhhCCCC
Confidence 445555555555555555432 2222 355555555555555422 1 445555555555555433333345555566
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCC-----------------CCCccCCCCCccEEEcCCCCCC
Q 016371 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPV-----------------SSPIVQGFDNLQLLNLEDNCIA 270 (390)
Q Consensus 208 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------------~~~~~~~l~~L~~L~L~~n~l~ 270 (390)
++|++++|.+... +. +..+++|++|++++|.+++.... ....+..+++|+.|++++|.++
T Consensus 158 ~~L~l~~~~~~~~--~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 158 NYLTVTESKVKDV--TP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp CEEECCSSCCCCC--GG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cEEEecCCCcCCc--hh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccC
Confidence 6666666655421 11 35566666666666665544310 0001344556666666666666
Q ss_pred CchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccC---CCCCCCCCEEeCCCCCCCCchhhhhccCC
Q 016371 271 EWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEES---YLPFQNLCCLLLGNNMIEDLASIDSLDSF 347 (390)
Q Consensus 271 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~N~i~~~~~~~~l~~l 347 (390)
+.+. +..+++|++|++++|.++++........++.+..+.+.... +..+++|++|++++|++++. .+..+..+
T Consensus 235 ~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l 310 (347)
T 4fmz_A 235 DLSP---LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNE-DMEVIGGL 310 (347)
T ss_dssp CCGG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGG-GHHHHHTC
T ss_pred CCcc---hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCc-ChhHhhcc
Confidence 5443 55666677777777666655322222334444444443322 34456666666666666654 23456666
Q ss_pred CCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016371 348 PKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 348 ~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
++|++|++++|++++ ++. ++.+++|+.|+++
T Consensus 311 ~~L~~L~L~~n~l~~-----~~~---~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 311 TNLTTLFLSQNHITD-----IRP---LASLSKMDSADFA 341 (347)
T ss_dssp TTCSEEECCSSSCCC-----CGG---GGGCTTCSEESSS
T ss_pred ccCCEEEccCCcccc-----ccC---hhhhhccceeehh
Confidence 667777777776653 222 4566777777665
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=5.7e-24 Score=213.12 Aligned_cols=239 Identities=18% Similarity=0.168 Sum_probs=119.4
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCC
Q 016371 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLK 205 (390)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~ 205 (390)
.+..+++|+.|+|++|.+...++.....+++|++|+|++|.+..+ .+..+..+++|++|++++|.+.+.++ .+..++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 171 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL--PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC--CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence 455666666666666666666654333346666666666666641 12234566666777776666666555 356666
Q ss_pred CccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCC-C------------ccCCCCCccEEEcCCCCCCCc
Q 016371 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSS-P------------IVQGFDNLQLLNLEDNCIAEW 272 (390)
Q Consensus 206 ~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~------------~~~~l~~L~~L~L~~n~l~~~ 272 (390)
+|++|++++|.++... +..+++|+.|++++|.+++...... . .....++|+.|+|++|.+++.
T Consensus 172 ~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~ 247 (597)
T 3oja_B 172 SLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT 247 (597)
T ss_dssp TCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC
T ss_pred cCcEEECcCCCCCCcC----hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC
Confidence 6777777666665321 2344555554444444433211000 0 000113455555555555553
Q ss_pred hhhhhcCCCCCcCeEecCCCccccccCCCC---CchhhhhhcccccccC----CCCCCCCCEEeCCCCCCCCchhhhhcc
Q 016371 273 SEILKLCQIRSLEQLYLNKNNLNRIYYPNN---DTIHELVSAHESHEES----YLPFQNLCCLLLGNNMIEDLASIDSLD 345 (390)
Q Consensus 273 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~L~~L~L~~N~i~~~~~~~~l~ 345 (390)
..+..+++|+.|+|++|.++++. |.. +..++.+.++.|...+ +..+++|+.|+|++|.++.++ ..+.
T Consensus 248 ---~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~ 321 (597)
T 3oja_B 248 ---AWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQP 321 (597)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGHH
T ss_pred ---hhhccCCCCCEEECCCCccCCCC-HHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccC--cccc
Confidence 23455666666666666666553 222 1111122222221111 233455555555555555443 2344
Q ss_pred CCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016371 346 SFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 346 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
.+++|+.|+|++|++.. ++ ++.+++|+.|+++
T Consensus 322 ~l~~L~~L~L~~N~l~~-----~~----~~~~~~L~~L~l~ 353 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVT-----LK----LSTHHTLKNLTLS 353 (597)
T ss_dssp HHTTCSEEECCSSCCCC-----CC----CCTTCCCSEEECC
T ss_pred cCCCCCEEECCCCCCCC-----cC----hhhcCCCCEEEee
Confidence 45555555555555543 11 3345555555554
No 20
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=9.4e-24 Score=192.38 Aligned_cols=206 Identities=23% Similarity=0.207 Sum_probs=176.5
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016371 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+.+++++++++++++.++.++..+. ++++.|+|++|.+..+ .+..+..+++|++|++++|.++...+ ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEE--EGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCcc--CHHHhhcCCCCCEEECCCCccCcccC-CCCCCcC
Confidence 3567889999999999998876553 7899999999999863 35678899999999999999987654 4788999
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeE
Q 016371 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (390)
Q Consensus 208 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 287 (390)
++|++++|.++ .++..+..+++|++|++++|.++.+++. .+..+++|+.|+|++|.++..++ ..+..+++|+.|
T Consensus 80 ~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L 153 (290)
T 1p9a_G 80 GTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKL 153 (290)
T ss_dssp CEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSS---TTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEE
T ss_pred CEEECCCCcCC--cCchhhccCCCCCEEECCCCcCcccCHH---HHcCCCCCCEEECCCCCCCccCh-hhcccccCCCEE
Confidence 99999999987 4555567899999999999999988754 68889999999999999998775 567889999999
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016371 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
+|++|+|+.+ |... +..+++|++|+|++|+|+.++ ..+..+++|+.|+|++||+.-++
T Consensus 154 ~L~~N~l~~l--~~~~---------------~~~l~~L~~L~L~~N~l~~ip--~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 154 SLANNNLTEL--PAGL---------------LNGLENLDTLLLQENSLYTIP--KGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp ECTTSCCSCC--CTTT---------------TTTCTTCCEEECCSSCCCCCC--TTTTTTCCCSEEECCSCCBCCSG
T ss_pred ECCCCcCCcc--CHHH---------------hcCcCCCCEEECCCCcCCccC--hhhcccccCCeEEeCCCCccCcC
Confidence 9999999987 4431 577899999999999999876 56777889999999999997543
No 21
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=2.6e-24 Score=198.32 Aligned_cols=209 Identities=20% Similarity=0.201 Sum_probs=169.5
Q ss_pred HhccccccEeecCCcccCCCCc-chh-hhcCcccEEECCCCcCCChHHHHHHHhcC-----CCCCEEEccCCCCCCccC-
Q 016371 128 FSKFEELTSAALPYLGVSSPGA-NIG-TIVTNLKELDLTGNLLSDWKDIGAFGEQL-----PALAVLNLSNNLMSKEVT- 199 (390)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~-~~~-~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l-----~~L~~L~ls~n~l~~~~~- 199 (390)
+.++++|++|++++|.+.+..+ .+. ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+
T Consensus 91 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR---DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp HHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS---SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred hcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch---hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 3478999999999999987555 431 4469999999999999973 4555665 999999999999998875
Q ss_pred CCCCCCCccEEEeecccCCHH-HHHHHH--hcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhh
Q 016371 200 GLPQLKSIRILVLNCTGVNWM-QVEILK--HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEIL 276 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~~~l~~~-~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 276 (390)
.+..+++|++|++++|.+.+. .++..+ ..+++|++|++++|.++.........+..+++|+.|+|++|.+++..+..
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 688999999999999998753 223333 78899999999999998543211113457799999999999999866434
Q ss_pred hcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEcc
Q 016371 277 KLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLS 356 (390)
Q Consensus 277 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 356 (390)
.+..+++|++|+|++|.|+.+ |.. +. ++|++|+|++|+|++++ . +..+++|++|+++
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~~i--p~~----------------~~--~~L~~L~Ls~N~l~~~p--~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLKQV--PKG----------------LP--AKLSVLDLSYNRLDRNP--S-PDELPQVGNLSLK 304 (312)
T ss_dssp CCCCCTTCCEEECTTSCCSSC--CSS----------------CC--SEEEEEECCSSCCCSCC--C-TTTSCEEEEEECT
T ss_pred hhhhcCCCCEEECCCCccChh--hhh----------------cc--CCceEEECCCCCCCCCh--h-HhhCCCCCEEecc
Confidence 566789999999999999966 654 22 89999999999999985 3 7889999999999
Q ss_pred CCCCCC
Q 016371 357 ENPVSD 362 (390)
Q Consensus 357 ~n~l~~ 362 (390)
+|++++
T Consensus 305 ~N~l~~ 310 (312)
T 1wwl_A 305 GNPFLD 310 (312)
T ss_dssp TCTTTC
T ss_pred CCCCCC
Confidence 999985
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=3.1e-24 Score=221.14 Aligned_cols=167 Identities=22% Similarity=0.209 Sum_probs=108.7
Q ss_pred HHHHHhccc-cccEeecCCcccCCCCc-chhh-hcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-
Q 016371 124 IQDKFSKFE-ELTSAALPYLGVSSPGA-NIGT-IVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT- 199 (390)
Q Consensus 124 l~~~~~~l~-~L~~L~L~~~~i~~~~~-~~~~-~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~- 199 (390)
+|..+..++ +|+.|++++|.+.+..+ .+.. .+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG--KIPPTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE--ECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc--ccCHHHhcCCCCCEEECcCCcccCcccH
Confidence 344455555 67777777777665433 2222 13667777777777765 456666777777777777777765544
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcC
Q 016371 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLC 279 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 279 (390)
.+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+++..+. .+..+++|+.|+|++|.+++..+ ..++
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~~p-~~~~ 511 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPS---GLSNCTNLNWISLSNNRLTGEIP-KWIG 511 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCCCSCCC-GGGG
T ss_pred HHhcCCCCCEEECCCCcccC-cCCHHHcCCCCceEEEecCCcccCcCCH---HHhcCCCCCEEEccCCccCCcCC-hHHh
Confidence 46667777777777777664 3344446677777777777777665433 56667777777777777775443 4566
Q ss_pred CCCCcCeEecCCCccccc
Q 016371 280 QIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 280 ~l~~L~~L~L~~n~l~~~ 297 (390)
.+++|++|+|++|.+++.
T Consensus 512 ~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGN 529 (768)
T ss_dssp GCTTCCEEECCSSCCEEE
T ss_pred cCCCCCEEECCCCcccCc
Confidence 677777777777777643
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=2.5e-24 Score=199.74 Aligned_cols=220 Identities=17% Similarity=0.156 Sum_probs=184.0
Q ss_pred eEEEEeChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCC
Q 016371 114 VSIELVGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNL 193 (390)
Q Consensus 114 ~~~~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~ 193 (390)
+.+...++..+|..+.++++|++|++++|.+...+..+.. +++|++|+|++|.+. .+|..+..+++|++|++++|+
T Consensus 86 L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~-l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 86 LELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ-FAGLETLTLARNPLR---ALPASIASLNRLRELSIRACP 161 (328)
T ss_dssp EEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGG-GTTCSEEEEESCCCC---CCCGGGGGCTTCCEEEEEEET
T ss_pred EEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhc-cCCCCEEECCCCccc---cCcHHHhcCcCCCEEECCCCC
Confidence 4455555667888888999999999999999976656766 499999999999998 467789999999999999987
Q ss_pred CCCccC-CCC---------CCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEE
Q 016371 194 MSKEVT-GLP---------QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLN 263 (390)
Q Consensus 194 l~~~~~-~~~---------~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 263 (390)
+.+..+ .+. .+++|++|++++|.++ .++..+..+++|++|++++|.+++++. .+..+++|+.|+
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~----~l~~l~~L~~L~ 235 (328)
T 4fcg_A 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGP----AIHHLPKLEELD 235 (328)
T ss_dssp TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCG----GGGGCTTCCEEE
T ss_pred CccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCch----hhccCCCCCEEE
Confidence 766655 443 3899999999999998 455667899999999999999997654 478899999999
Q ss_pred cCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhh
Q 016371 264 LEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDS 343 (390)
Q Consensus 264 L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~ 343 (390)
|++|.+.+..+ ..++.+++|++|+|++|.+.+.. |.. +..+++|++|+|++|++.+. .++.
T Consensus 236 Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~-p~~----------------~~~l~~L~~L~L~~n~~~~~-iP~~ 296 (328)
T 4fcg_A 236 LRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTL-PLD----------------IHRLTQLEKLDLRGCVNLSR-LPSL 296 (328)
T ss_dssp CTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBC-CTT----------------GGGCTTCCEEECTTCTTCCC-CCGG
T ss_pred CcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhc-chh----------------hhcCCCCCEEeCCCCCchhh-ccHH
Confidence 99999887654 56889999999999999887653 554 67889999999999977763 4478
Q ss_pred ccCCCCCcEEEccCCCCCC
Q 016371 344 LDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 344 l~~l~~L~~L~l~~n~l~~ 362 (390)
+..+++|+.+++..+.+..
T Consensus 297 l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 297 IAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp GGGSCTTCEEECCGGGSCC
T ss_pred HhhccCceEEeCCHHHHHH
Confidence 9999999999999887653
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=7.8e-24 Score=201.17 Aligned_cols=256 Identities=18% Similarity=0.149 Sum_probs=176.6
Q ss_pred eEEEEeChhHHHH-HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCC
Q 016371 114 VSIELVGKDKIQD-KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNN 192 (390)
Q Consensus 114 ~~~~~~g~~~l~~-~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n 192 (390)
+.+....+..+|. .+..+++|++|++++|.+...++.....+++|++|++++|.+.. ..|..+..+++|++|++++|
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc--CCHHHhcCCCCCCEEECCCC
Confidence 3344444455554 46889999999999999988877333446999999999999986 33566789999999999999
Q ss_pred CCCCccCC-CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCC
Q 016371 193 LMSKEVTG-LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE 271 (390)
Q Consensus 193 ~l~~~~~~-~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 271 (390)
.++..++. +..+++|++|++++|.+.. ..+..+..+++|++|++++|.++... +..+++|+.|++++|.++.
T Consensus 128 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 128 DLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD------LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBCC------GGGCTTCSEEECCSSCCSE
T ss_pred ccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCccc------cccccccceeecccccccc
Confidence 99877665 5789999999999999874 23344578899999999999998763 2334555555555554443
Q ss_pred chhhh---------------hcCCCCCcCeEecCCCccccccCCCCCchhhhhhccccccc-----CCCCCCCCCEEeCC
Q 016371 272 WSEIL---------------KLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEE-----SYLPFQNLCCLLLG 331 (390)
Q Consensus 272 ~~~~~---------------~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~L~L~ 331 (390)
..... .....++|+.|++++|.+++...-.....++.+.++.+... .+..+++|++|+|+
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence 21100 01223567777777777766522222233444555544432 34567788888888
Q ss_pred CCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 332 NNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 332 ~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+|++++++ ..+..+++|++|++++|++.. ++.. ++.+++|+.|+++.
T Consensus 281 ~n~l~~~~--~~~~~l~~L~~L~L~~n~l~~-----~~~~--~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 281 NNRLVALN--LYGQPIPTLKVLDLSHNHLLH-----VERN--QPQFDRLENLYLDH 327 (390)
T ss_dssp SSCCCEEE--CSSSCCTTCCEEECCSSCCCC-----CGGG--HHHHTTCSEEECCS
T ss_pred CCcCcccC--cccCCCCCCCEEECCCCccee-----cCcc--ccccCcCCEEECCC
Confidence 88887764 345667888888888888763 5554 67788888888763
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=6.1e-24 Score=197.32 Aligned_cols=227 Identities=20% Similarity=0.238 Sum_probs=177.7
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCC--ccC-CC
Q 016371 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK--EVT-GL 201 (390)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~--~~~-~~ 201 (390)
|..+..+++|++|++++|.+...+..+. ++|++|++++|.+.. ..+..+..+++|++|++++|.+.. ..+ .+
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 167 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITK--VRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCB--BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG
T ss_pred HHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccc--cCHhHhcCCccccEEECCCCcCCccCcChhhc
Confidence 5677889999999999999987765443 799999999999986 345678899999999999998864 222 57
Q ss_pred CCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCC
Q 016371 202 PQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQI 281 (390)
Q Consensus 202 ~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l 281 (390)
..+++|++|++++|.++. ++. ...++|++|++++|.+++..+. .+..+++|+.|+|++|.+++.++ ..+..+
T Consensus 168 ~~l~~L~~L~l~~n~l~~--l~~--~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l 239 (330)
T 1xku_A 168 QGMKKLSYIRIADTNITT--IPQ--GLPPSLTELHLDGNKITKVDAA---SLKGLNNLAKLGLSFNSISAVDN-GSLANT 239 (330)
T ss_dssp GGCTTCCEEECCSSCCCS--CCS--SCCTTCSEEECTTSCCCEECTG---GGTTCTTCCEEECCSSCCCEECT-TTGGGS
T ss_pred cCCCCcCEEECCCCcccc--CCc--cccccCCEEECCCCcCCccCHH---HhcCCCCCCEEECCCCcCceeCh-hhccCC
Confidence 788999999999998873 322 2237899999999999887554 67888999999999999988764 567788
Q ss_pred CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhcc------CCCCCcEEEc
Q 016371 282 RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLD------SFPKLMDIRL 355 (390)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~------~l~~L~~L~l 355 (390)
++|++|+|++|.++.+ |.. +..+++|++|++++|+|++++. ..+. ..+.|+.|++
T Consensus 240 ~~L~~L~L~~N~l~~l--p~~----------------l~~l~~L~~L~l~~N~i~~~~~-~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 240 PHLRELHLNNNKLVKV--PGG----------------LADHKYIQVVYLHNNNISAIGS-NDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp TTCCEEECCSSCCSSC--CTT----------------TTTCSSCCEEECCSSCCCCCCT-TSSSCSSCCTTSCCCSEEEC
T ss_pred CCCCEEECCCCcCccC--Chh----------------hccCCCcCEEECCCCcCCccCh-hhcCCcccccccccccceEe
Confidence 9999999999999966 655 6778999999999999998653 3332 3578999999
Q ss_pred cCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 356 SENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 356 ~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
++||+.... ..+.. +..++.|+.++++.
T Consensus 301 ~~N~~~~~~--i~~~~--f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 301 FSNPVQYWE--IQPST--FRCVYVRAAVQLGN 328 (330)
T ss_dssp CSSSSCGGG--SCGGG--GTTCCCGGGEEC--
T ss_pred ecCcccccc--cCccc--cccccceeEEEecc
Confidence 999986311 12232 66788888888764
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=6.6e-24 Score=204.92 Aligned_cols=233 Identities=19% Similarity=0.215 Sum_probs=190.3
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC
Q 016371 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (390)
Q Consensus 120 g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~ 199 (390)
++..+|..+ .++++.|+|++|.+....+.....+++|++|+|++|.+..+ .+..+..+++|++|++++|+++...+
T Consensus 54 ~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i--~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 54 NLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI--EIGAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp CCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE--CGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred CcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc--ChhhccCCccCCEEECCCCcCCeeCH
Confidence 344555433 26799999999999988773344469999999999999863 24678899999999999999998776
Q ss_pred -CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCC-CccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhh
Q 016371 200 -GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGN-SISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277 (390)
Q Consensus 200 -~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 277 (390)
.+..+++|++|++++|.++. ..+..+..+++|++|++++| .+..+... .+..+++|+.|+|++|.++..+ .
T Consensus 130 ~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~---~ 202 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEG---AFEGLSNLRYLNLAMCNLREIP---N 202 (440)
T ss_dssp TTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTT---TTTTCSSCCEEECTTSCCSSCC---C
T ss_pred hHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcc---hhhcccccCeecCCCCcCcccc---c
Confidence 58899999999999999874 23345578999999999995 45555443 6788999999999999999865 4
Q ss_pred cCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC
Q 016371 278 LCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE 357 (390)
Q Consensus 278 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~ 357 (390)
+..+++|++|+|++|.|+++. |.. +..+++|+.|+|++|+|++++ ...+..+++|++|+|++
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~-~~~----------------~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIR-PGS----------------FQGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAH 264 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEEC-TTT----------------TTTCTTCCEEECTTCCCCEEC-TTSSTTCTTCCEEECTT
T ss_pred cCCCcccCEEECCCCccCccC-hhh----------------hccCccCCEEECCCCceeEEC-hhhhcCCCCCCEEECCC
Confidence 788999999999999999874 333 678899999999999999874 46788999999999999
Q ss_pred CCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 358 NPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 358 n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|.++. ++.. .++.+++|+.|+++.
T Consensus 265 N~l~~-----~~~~-~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 265 NNLTL-----LPHD-LFTPLHHLERIHLHH 288 (440)
T ss_dssp SCCCC-----CCTT-TTSSCTTCCEEECCS
T ss_pred CCCCc-----cChh-HhccccCCCEEEcCC
Confidence 99985 3322 367899999998864
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=3.5e-24 Score=216.08 Aligned_cols=224 Identities=15% Similarity=0.110 Sum_probs=164.2
Q ss_pred chhhhcCcccEEECCCCcCCCh---------------HHHHHHHh--cCCCCCEEEccCCCCCCccC-CCCCCCCccEEE
Q 016371 150 NIGTIVTNLKELDLTGNLLSDW---------------KDIGAFGE--QLPALAVLNLSNNLMSKEVT-GLPQLKSIRILV 211 (390)
Q Consensus 150 ~~~~~~~~L~~L~Ls~n~l~~~---------------~~i~~~~~--~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~ 211 (390)
.+.. +++|++|+|++|.+++. ..+|..+. ++++|++|++++|.+.+..| .+..+++|++|+
T Consensus 201 ~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 201 AVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 4444 59999999999999860 01788888 99999999999999888766 688999999999
Q ss_pred eeccc-CCHHHHHHHHhcC------CcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCc
Q 016371 212 LNCTG-VNWMQVEILKHSL------PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 212 L~~~~-l~~~~~~~~~~~l------~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
+++|. +++..++..+..+ ++|++|++++|.++.++. ...++.+++|+.|++++|.+++..+ .++.+++|
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~--~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L 355 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV--ETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKL 355 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC--HHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc--hhhhccCCCCCEEeCcCCcCccchh--hhCCCCCC
Confidence 99998 8874466655665 999999999999985442 0047889999999999999984332 57778899
Q ss_pred CeEecCCCccccccCCCCCch----hhhhhcccccccCC----CC--CCCCCEEeCCCCCCCCchhhhhcc-------CC
Q 016371 285 EQLYLNKNNLNRIYYPNNDTI----HELVSAHESHEESY----LP--FQNLCCLLLGNNMIEDLASIDSLD-------SF 347 (390)
Q Consensus 285 ~~L~L~~n~l~~~~~~~~~~~----~~~~~~~~~~~~~~----~~--~~~L~~L~L~~N~i~~~~~~~~l~-------~l 347 (390)
++|+|++|.++.+ |..+.. ++.+.++.+....+ .. +++|++|++++|++++. .+..+. .+
T Consensus 356 ~~L~L~~N~l~~l--p~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 356 ASLNLAYNQITEI--PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV-DGKNFDPLDPTPFKG 432 (636)
T ss_dssp SEEECCSSEEEEC--CTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTT-TTCSSCTTCSSCCCC
T ss_pred CEEECCCCccccc--cHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCc-chhhhcccccccccC
Confidence 9999999998854 554322 33344444443322 12 33678888888877764 224444 66
Q ss_pred CCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 348 PKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 348 ~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
++|++|++++|.+.. ++.. +...+++|+.|+++.
T Consensus 433 ~~L~~L~Ls~N~l~~-----lp~~-~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 433 INVSSINLSNNQISK-----FPKE-LFSTGSPLSSINLMG 466 (636)
T ss_dssp CCEEEEECCSSCCCS-----CCTH-HHHTTCCCSEEECCS
T ss_pred CCCCEEECcCCccCc-----CCHH-HHccCCCCCEEECCC
Confidence 788888888888873 4443 245588888888764
No 28
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=5.6e-23 Score=185.36 Aligned_cols=204 Identities=25% Similarity=0.292 Sum_probs=171.2
Q ss_pred cccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC-CCCCCCccEEE
Q 016371 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LPQLKSIRILV 211 (390)
Q Consensus 133 ~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~l~~L~~L~ 211 (390)
..+.++++++.++.++..+. ++|+.|++++|.+..+ .+..+..+++|++|++++|.++...+. +..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP---ADTKKLDLQSNKLSSL--PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCSCC--CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCccCCCCC---CCCCEEECcCCCCCee--CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 46789999999998765442 6899999999999863 234678899999999999999877664 57899999999
Q ss_pred eecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCC
Q 016371 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (390)
Q Consensus 212 L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 291 (390)
+++|.++. ..+..+..+++|++|++++|.++...+. .+..+++|++|+|++|.++..+. ..+..+++|++|+|++
T Consensus 92 l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 92 VTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPR---VFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred CCCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHH---HhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecC
Confidence 99999874 2334457889999999999999988755 57889999999999999998775 5678899999999999
Q ss_pred CccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016371 292 NNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 292 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
|.++.+. +.. +..+++|++|+|++|+|++++. ..+..+++|+.|++++||+.-++
T Consensus 167 n~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 167 NQLKRVP-EGA----------------FDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SCCSCCC-TTT----------------TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCSS
T ss_pred CcCcEeC-hhH----------------hccCCCcCEEECCCCcCCcCCH-HHhccccCCCEEEecCCCeeCCC
Confidence 9999873 222 6778999999999999998753 56788999999999999998655
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=4.6e-24 Score=215.22 Aligned_cols=249 Identities=13% Similarity=0.119 Sum_probs=139.6
Q ss_pred hHHHHHHhccccccEeecCCcc-cCC--CCcchhhh-----cCcccEEECCCCcCCChHHHHH--HHhcCCCCCEEEccC
Q 016371 122 DKIQDKFSKFEELTSAALPYLG-VSS--PGANIGTI-----VTNLKELDLTGNLLSDWKDIGA--FGEQLPALAVLNLSN 191 (390)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~~-i~~--~~~~~~~~-----~~~L~~L~Ls~n~l~~~~~i~~--~~~~l~~L~~L~ls~ 191 (390)
+.+|..+.++++|++|++++|. +++ .+..+..+ +++|++|++++|.++ .+|. .+..+++|++|++++
T Consensus 263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~---~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK---TFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS---SCCCHHHHTTCTTCCEEECCS
T ss_pred ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC---ccCchhhhccCCCCCEEeCcC
Confidence 4456667777777777777776 664 22233332 367777777777776 3555 667777777777777
Q ss_pred CCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCc-ccEEeccCCCccccCCCC---------------------
Q 016371 192 NLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPA-LEELHLMGNSISEITPVS--------------------- 249 (390)
Q Consensus 192 n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~--------------------- 249 (390)
|++.+..+.+..+++|++|++++|.++ .++..+..+++ |++|++++|.++.++..+
T Consensus 340 N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 340 NQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp CCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred CcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCc
Confidence 777644445555556666666666554 33333445555 555555555555332210
Q ss_pred -CCccC-------CCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCC-c----------hhhhhh
Q 016371 250 -SPIVQ-------GFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNND-T----------IHELVS 310 (390)
Q Consensus 250 -~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~----------~~~~~~ 310 (390)
+..+. .+++|+.|+|++|.++..+. ..+..+++|++|+|++|.++.+ |... . .++.+.
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEI--PKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT-HHHHTTCCCSEEECCSSCCSBC--CSSSSEETTEECTTGGGCCEEE
T ss_pred chhhhcccccccccCCCCCEEECcCCccCcCCH-HHHccCCCCCEEECCCCCCCCc--CHHHhccccccccccCCccEEE
Confidence 01222 34466666666666665443 3344566777777777777644 3221 1 333444
Q ss_pred cccccccC----CC--CCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC------CCCCCCCCcchhhhhhhhhcC
Q 016371 311 AHESHEES----YL--PFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE------NPVSDPGRGGISRFAIIARLG 378 (390)
Q Consensus 311 ~~~~~~~~----~~--~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~------n~l~~~~~~~~~~~~~i~~l~ 378 (390)
++.|.... +. .+++|++|+|++|+|+++| ..+..+++|++|+|++ |.+. +.+|.. ++.++
T Consensus 495 Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~Ls~N~~ls~N~l~----~~~p~~--l~~l~ 566 (636)
T 4eco_A 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFP--TQPLNSSTLKGFGIRNQRDAQGNRTL----REWPEG--ITLCP 566 (636)
T ss_dssp CCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCC--CGGGGCSSCCEEECCSCBCTTCCBCC----CCCCTT--GGGCS
T ss_pred CcCCcCCccChhhhhccCCCcCEEECCCCCCCCcC--hhhhcCCCCCEEECCCCcccccCccc----ccChHH--HhcCC
Confidence 44443322 22 5566666666666666643 4455566666666643 3333 234544 56666
Q ss_pred CceEecCc
Q 016371 379 KIKILNGS 386 (390)
Q Consensus 379 ~L~~Ln~s 386 (390)
+|+.|+++
T Consensus 567 ~L~~L~Ls 574 (636)
T 4eco_A 567 SLTQLQIG 574 (636)
T ss_dssp SCCEEECC
T ss_pred CCCEEECC
Confidence 77766665
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=9.7e-24 Score=204.47 Aligned_cols=233 Identities=20% Similarity=0.217 Sum_probs=189.7
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC
Q 016371 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (390)
Q Consensus 120 g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~ 199 (390)
++..+|..+ .++++.|+|++|.+....+.....+++|+.|+|++|.+.. ..+..+..+++|++|++++|+++..++
T Consensus 65 ~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 65 GLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ--IEVGAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred CcCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC--cChhhccCcccCCEEECCCCcCCccCh
Confidence 344455332 3689999999999998877444446999999999999986 334678899999999999999998776
Q ss_pred C-CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCC-CccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhh
Q 016371 200 G-LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGN-SISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277 (390)
Q Consensus 200 ~-~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 277 (390)
. +..+++|++|+|++|.++. .....+..+++|++|++++| .+..+... .+..+++|+.|+|++|.++..+ .
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~---~ 213 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEG---AFEGLFNLKYLNLGMCNIKDMP---N 213 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTT---TTTTCTTCCEEECTTSCCSSCC---C
T ss_pred hhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChh---hccCCCCCCEEECCCCcccccc---c
Confidence 4 7889999999999999874 23345578999999999994 55555443 5788999999999999999865 4
Q ss_pred cCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC
Q 016371 278 LCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE 357 (390)
Q Consensus 278 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~ 357 (390)
+..+++|++|+|++|.++++. |.. +..+++|+.|+|++|+|++.+ +..+..+++|++|+|++
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~-~~~----------------~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIR-PGS----------------FHGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVELNLAH 275 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEEC-GGG----------------GTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCS
T ss_pred ccccccccEEECcCCcCcccC-ccc----------------ccCccCCCEEEeCCCcCceEC-HHHhcCCCCCCEEECCC
Confidence 788999999999999999874 333 678899999999999999874 46788999999999999
Q ss_pred CCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 358 NPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 358 n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|.|+. ++.. .+..+++|+.|+++.
T Consensus 276 N~l~~-----~~~~-~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 276 NNLSS-----LPHD-LFTPLRYLVELHLHH 299 (452)
T ss_dssp SCCSC-----CCTT-SSTTCTTCCEEECCS
T ss_pred CcCCc-----cChH-HhccccCCCEEEccC
Confidence 99985 3322 367889999998864
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=2.9e-23 Score=208.46 Aligned_cols=246 Identities=19% Similarity=0.191 Sum_probs=180.8
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC--CCCCC
Q 016371 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT--GLPQL 204 (390)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~l 204 (390)
.+..+++|++|++++|.+...+..+.. +++|++|++++|.+.. ..|..+..+++|++|++++|.+.+..+ .+..+
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~-l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVG-LSTLKKLVLSANKFEN--LCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCS-CTTCCEEECTTCCCSB--GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcc-cccCCEEECccCCcCc--CchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 467888999999999988877666555 4899999999998886 335667888999999999988775444 37788
Q ss_pred CCccEEEeecccCCHHH-HHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016371 205 KSIRILVLNCTGVNWMQ-VEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 205 ~~L~~L~L~~~~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
++|++|++++|.+.... .+..+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+....+...+..+++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE---AFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT---TTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH---HhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 88999999988886421 033447788889999988888777554 57777888888888888776544234677888
Q ss_pred cCeEecCCCccccccCCCC---Cchhhhhhccccccc--------CCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcE
Q 016371 284 LEQLYLNKNNLNRIYYPNN---DTIHELVSAHESHEE--------SYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMD 352 (390)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~ 352 (390)
|++|++++|.++... |.. ...++.+..+.+... .+..+++|++|++++|++++.+ +..+..+++|++
T Consensus 427 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 504 (606)
T 3t6q_A 427 LKVLNLSHSLLDISS-EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID-QHAFTSLKMMNH 504 (606)
T ss_dssp CCEEECTTCCCBTTC-TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC-TTTTTTCTTCCE
T ss_pred CCEEECCCCccCCcC-HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC-hhhhccccCCCE
Confidence 888888888887653 222 233444555554432 2566788999999999888763 367788889999
Q ss_pred EEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 353 IRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 353 L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|++++|+++. ..+.. ++.+++| .||++.
T Consensus 505 L~Ls~N~l~~----~~~~~--l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 505 VDLSHNRLTS----SSIEA--LSHLKGI-YLNLAS 532 (606)
T ss_dssp EECCSSCCCG----GGGGG--GTTCCSC-EEECCS
T ss_pred EECCCCccCc----CChhH--hCccccc-EEECcC
Confidence 9999998873 44554 7788888 887753
No 32
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=99.90 E-value=8.2e-24 Score=148.96 Aligned_cols=75 Identities=35% Similarity=0.715 Sum_probs=65.2
Q ss_pred CCCCCCCCCEEEeCCCCeeeEEEEEeeecCC-CCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016371 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQG-YSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 5 ~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~-~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~~ 81 (390)
.|.+++||+||.+..+. +.|||||+|+++. .+|.|+|||||+|.|||||+++|++||+|. +++|.|++++++..+
T Consensus 2 ~m~~i~vG~Rv~v~~~~-~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~-~~~G~Fvr~~~v~~g 77 (84)
T 4b6m_A 2 HMETIHVGDRCLCRPGD-RLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQ-PNYGGFLRPDQVEVG 77 (84)
T ss_dssp ---CCCTTCEEEETTTT-EEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCC-TTSEEEECGGGEEEC
T ss_pred CccCcccCCEEEEcCCC-eEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecC-CCeEEEecHHHeEEC
Confidence 48899999999996543 5699999999876 579999999999999999999999999998 499999999998765
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=9.4e-23 Score=190.54 Aligned_cols=214 Identities=19% Similarity=0.245 Sum_probs=122.3
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016371 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+..+++|+.|++++|......+.+.. +++|++|++++|.+..... +..+++|++|++++|.+....+ +..+++|
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 201 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSN-MTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP-LASLTSL 201 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTT-CTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG-GGGCTTC
T ss_pred hccCCceeEEECCCCCCcccccchhh-CCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCccccccc-ccCCCcc
Confidence 34444444444444433222222222 3555555555555554221 4556666666666666554332 4455566
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeE
Q 016371 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (390)
Q Consensus 208 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 287 (390)
+.|++++|.+.... . +..+++|++|++++|.++...+ +..+++|++|++++|.++..+ .+..+++|++|
T Consensus 202 ~~L~l~~n~l~~~~--~-~~~~~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L 270 (347)
T 4fmz_A 202 HYFTAYVNQITDIT--P-VANMTRLNSLKIGNNKITDLSP-----LANLSQLTWLEIGTNQISDIN---AVKDLTKLKML 270 (347)
T ss_dssp CEEECCSSCCCCCG--G-GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCG---GGTTCTTCCEE
T ss_pred ceeecccCCCCCCc--h-hhcCCcCCEEEccCCccCCCcc-----hhcCCCCCEEECCCCccCCCh---hHhcCCCcCEE
Confidence 66666666554311 1 3556666666666666655432 455666666666666666542 35556666666
Q ss_pred ecCCCccccccCCCCCchhhhhhccccccc-----CCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016371 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEE-----SYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
++++|.++++..-.....++.+..+.+... .+..+++|++|++++|++++.+. +..+++|++|++++|+|+
T Consensus 271 ~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 271 NVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred EccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence 666666665421122233334444444332 24578999999999999999753 778999999999999986
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1e-23 Score=211.66 Aligned_cols=252 Identities=17% Similarity=0.172 Sum_probs=172.1
Q ss_pred hHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHH-HHHhcCCCCCEEEccCCCCCCcc--
Q 016371 122 DKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIG-AFGEQLPALAVLNLSNNLMSKEV-- 198 (390)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~-~~~~~l~~L~~L~ls~n~l~~~~-- 198 (390)
..+|..+..+++|++|++++|.+....+.....+++|++|++++|.+.. .++ ..+..+++|++|++++|.+....
T Consensus 291 ~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 368 (606)
T 3t6q_A 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL--ELGTGCLENLENLRELDLSHDDIETSDCC 368 (606)
T ss_dssp SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC--BCCSSTTTTCTTCCEEECCSSCCCEEEES
T ss_pred CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc--ccchhhhhccCcCCEEECCCCccccccCc
Confidence 4556667778888888888888877655233334788888888887663 222 23567778888888888776653
Q ss_pred C-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhh
Q 016371 199 T-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277 (390)
Q Consensus 199 ~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 277 (390)
+ .+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+++..+. ..+..+++|+.|++++|.+....+ ..
T Consensus 369 ~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~ 444 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQ--SPFQNLHLLKVLNLSHSLLDISSE-QL 444 (606)
T ss_dssp TTTTTTCTTCCEEECCSCSCEE-ECTTTTTTCTTCSEEECTTCCEECCTTC--CTTTTCTTCCEEECTTCCCBTTCT-TT
T ss_pred chhcccCCCCCEEECCCCcCCc-CCHHHhcCCccCCeEECCCCcCCCcccc--hhhhCcccCCEEECCCCccCCcCH-HH
Confidence 2 46677778888887777653 2333446677777777777777665432 235667777777777777766543 45
Q ss_pred cCCCCCcCeEecCCCccccccCCC--CC---chhhhhhcccccc-----cCCCCCCCCCEEeCCCCCCCCchhhhhccCC
Q 016371 278 LCQIRSLEQLYLNKNNLNRIYYPN--ND---TIHELVSAHESHE-----ESYLPFQNLCCLLLGNNMIEDLASIDSLDSF 347 (390)
Q Consensus 278 l~~l~~L~~L~L~~n~l~~~~~~~--~~---~~~~~~~~~~~~~-----~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l 347 (390)
++.+++|++|++++|.+++...+. .+ ..++.+..+.+.. ..+..+++|++|+|++|++++. .++.+..+
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l 523 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS-SIEALSHL 523 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG-GGGGGTTC
T ss_pred HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC-ChhHhCcc
Confidence 666777777777777776532221 11 2233344444432 2366789999999999999986 45788999
Q ss_pred CCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 348 PKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 348 ~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
++| +|++++|.++. ..+.. ++.+++|+.|+++.
T Consensus 524 ~~L-~L~L~~N~l~~----~~~~~--~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 524 KGI-YLNLASNHISI----ILPSL--LPILSQQRTINLRQ 556 (606)
T ss_dssp CSC-EEECCSSCCCC----CCGGG--HHHHHTSSEEECTT
T ss_pred ccc-EEECcCCcccc----cCHhh--cccCCCCCEEeCCC
Confidence 999 99999999984 33444 78899999998864
No 35
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.90 E-value=5e-24 Score=155.27 Aligned_cols=88 Identities=26% Similarity=0.517 Sum_probs=67.9
Q ss_pred CCCCCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCCCC
Q 016371 4 CNPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGIS 83 (390)
Q Consensus 4 ~~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~~~~ 83 (390)
.++..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|+++.++.....
T Consensus 6 ~~~~~~~vG~rV~V~g~--~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~G~Fv~~~~v~~~~~ 82 (96)
T 2z0w_A 6 SGEGELRLGERVLVVGQ--RLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCS-PRYGIFAPPSRVQRVTD 82 (96)
T ss_dssp -----CCTTCCCCCCCC--CCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESSCCC-TTSEEEECGGGCCCTTC
T ss_pred CCcccCCCCCEEEECCC--cEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEECCEEeeecC-CCeEEEEcHHHceeccc
Confidence 45678999999999764 4599999999999999999999999999999999999999996 59999999999999888
Q ss_pred chHHHHhhhcC
Q 016371 84 LPEALRVRYRG 94 (390)
Q Consensus 84 ~~~~l~~~y~~ 94 (390)
+++++.+.+..
T Consensus 83 ~~~~~~e~~~~ 93 (96)
T 2z0w_A 83 SLDTLSEISGP 93 (96)
T ss_dssp -----------
T ss_pred hhhhhhhhccc
Confidence 99988877654
No 36
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=3.8e-23 Score=190.04 Aligned_cols=194 Identities=25% Similarity=0.374 Sum_probs=167.8
Q ss_pred hccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCcc
Q 016371 129 SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIR 208 (390)
Q Consensus 129 ~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~ 208 (390)
.++++|+.|+++++.+...+ .+.. +++|++|++++|.+.++. . +..+++|++|++++|.++.. +.+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~-l~~L~~L~L~~n~i~~~~---~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQY-LNNLIGLELKDNQITDLA---P-LKNLTKITELELSGNPLKNV-SAIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGG-CTTCCEEECCSSCCCCCG---G-GTTCCSCCEEECCSCCCSCC-GGGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCccCch-hhhc-cCCCCEEEccCCcCCCCh---h-HccCCCCCEEEccCCcCCCc-hhhcCCCCCC
Confidence 45779999999999998875 4544 599999999999999743 3 88999999999999999865 4688999999
Q ss_pred EEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEe
Q 016371 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (390)
Q Consensus 209 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 288 (390)
+|++++|.++. ++. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++.+. +..+++|+.|+
T Consensus 111 ~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~ 179 (308)
T 1h6u_A 111 TLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLK 179 (308)
T ss_dssp EEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEE
T ss_pred EEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCCCChh---hcCCCCCCEEE
Confidence 99999999985 333 5889999999999999987653 6788999999999999998664 78899999999
Q ss_pred cCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016371 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+++|.++++. . +..+++|++|+|++|+|++++ .+..+++|+.|++++|+++.
T Consensus 180 l~~n~l~~~~--~-----------------l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 180 ADDNKISDIS--P-----------------LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCSSCCCCCG--G-----------------GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCccCcCh--h-----------------hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeeec
Confidence 9999998873 2 467899999999999999876 37889999999999999975
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1.8e-24 Score=198.77 Aligned_cols=228 Identities=19% Similarity=0.161 Sum_probs=187.3
Q ss_pred ccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEE
Q 016371 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILV 211 (390)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~ 211 (390)
++|++|++++|.+...+..+...+++|++|++++|.+.....++..+..+++|++|++++|.+...++.+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 68999999999999887765555699999999999998543335566789999999999999987666788999999999
Q ss_pred eecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCC-chhhhhcCCCCCcCeEecC
Q 016371 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE-WSEILKLCQIRSLEQLYLN 290 (390)
Q Consensus 212 L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~l~~L~~L~L~ 290 (390)
+++|.++.......+..+++|++|++++|.++...+. .+..+++|++|++++|.+.+ ..+ ..+..+++|++|+|+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLS 183 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT---TTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECT
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchh---hcccCcCCCEEECCCCccccccch-hHHhhCcCCCEEECC
Confidence 9999887422223457899999999999999877654 67889999999999999876 222 567889999999999
Q ss_pred CCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhh
Q 016371 291 KNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISR 370 (390)
Q Consensus 291 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 370 (390)
+|.++++. |.. +..+++|++|+|++|++++.+. ..+..+++|++|++++|++.. ..+.
T Consensus 184 ~n~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~----~~~~ 241 (306)
T 2z66_A 184 QCQLEQLS-PTA----------------FNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMT----SKKQ 241 (306)
T ss_dssp TSCCCEEC-TTT----------------TTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCB----CSSS
T ss_pred CCCcCCcC-HHH----------------hcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcc----cCHH
Confidence 99999874 333 6778999999999999998753 467889999999999999984 3344
Q ss_pred hhhhhhcC-CceEecCcc
Q 016371 371 FAIIARLG-KIKILNGSE 387 (390)
Q Consensus 371 ~~~i~~l~-~L~~Ln~s~ 387 (390)
. ++.++ +|+.|+++.
T Consensus 242 ~--~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 242 E--LQHFPSSLAFLNLTQ 257 (306)
T ss_dssp S--CCCCCTTCCEEECTT
T ss_pred H--HHhhhccCCEEEccC
Confidence 3 66774 899998864
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.7e-23 Score=214.22 Aligned_cols=249 Identities=14% Similarity=0.124 Sum_probs=152.2
Q ss_pred hHHHHHHhccccccEeecCCcc-cCC--CCcchhhh------cCcccEEECCCCcCCChHHHHH--HHhcCCCCCEEEcc
Q 016371 122 DKIQDKFSKFEELTSAALPYLG-VSS--PGANIGTI------VTNLKELDLTGNLLSDWKDIGA--FGEQLPALAVLNLS 190 (390)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~~-i~~--~~~~~~~~------~~~L~~L~Ls~n~l~~~~~i~~--~~~~l~~L~~L~ls 190 (390)
+.+|..+.++++|+.|++++|. +++ .+..+..+ +++|+.|+|++|.+. .+|. .+..+++|+.|+++
T Consensus 505 ~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ip~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EFPASASLQKMVKLGLLDCV 581 (876)
T ss_dssp CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---BCCCHHHHTTCTTCCEEECT
T ss_pred ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---ccCChhhhhcCCCCCEEECC
Confidence 4567777888888888888887 665 22233332 248888888888877 4555 67788888888888
Q ss_pred CCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCc-ccEEeccCCCccccCCC---------------------
Q 016371 191 NNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPA-LEELHLMGNSISEITPV--------------------- 248 (390)
Q Consensus 191 ~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~--------------------- 248 (390)
+|+++ .++.+..+++|+.|++++|.++ .++..+..+++ |++|++++|.++.++..
T Consensus 582 ~N~l~-~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 582 HNKVR-HLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp TSCCC-BCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CCCcc-cchhhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence 88877 4446777777888888887776 44444566666 77777777776644321
Q ss_pred ----CCCccC--CCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCC-c----------hhhhhhc
Q 016371 249 ----SSPIVQ--GFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNND-T----------IHELVSA 311 (390)
Q Consensus 249 ----~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~----------~~~~~~~ 311 (390)
++..+. .+++|+.|+|++|.++..+. ..+..+++|+.|+|++|.|+.+ |... . .++.+.+
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~l~~L~~L~Ls~N~L~~i--p~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSI--PENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH-HHHHTTCCCSEEECCSCCCSCC--CTTSSSCTTSCCTTGGGCCEEEC
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCccCH-HHHccCCCCCEEECCCCcCCcc--ChHHhccccccccccCCccEEEC
Confidence 000111 12356666666666665443 3344667777777777777754 3321 1 3344444
Q ss_pred ccccccC----CC--CCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCC------CCCCCCCcchhhhhhhhhcCC
Q 016371 312 HESHEES----YL--PFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSEN------PVSDPGRGGISRFAIIARLGK 379 (390)
Q Consensus 312 ~~~~~~~----~~--~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n------~l~~~~~~~~~~~~~i~~l~~ 379 (390)
+.|.... +. .+++|+.|+|++|+|++++ ..+..+++|+.|+|++| .+. +.+|.. ++.+++
T Consensus 736 s~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp--~~l~~L~~L~~L~Ls~N~~ls~N~l~----~~ip~~--l~~L~~ 807 (876)
T 4ecn_A 736 RFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFP--TQPLNSSQLKAFGIRHQRDAEGNRIL----RQWPTG--ITTCPS 807 (876)
T ss_dssp CSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCC--CGGGGCTTCCEEECCCCBCTTCCBCC----CCCCTT--GGGCSS
T ss_pred CCCCCccchHHhhhccCCCcCEEEeCCCCCCccc--hhhhcCCCCCEEECCCCCCccccccc----ccChHH--HhcCCC
Confidence 4443322 22 5566666666666666643 44556666666666553 333 234544 566777
Q ss_pred ceEecCcc
Q 016371 380 IKILNGSE 387 (390)
Q Consensus 380 L~~Ln~s~ 387 (390)
|+.|+++.
T Consensus 808 L~~L~Ls~ 815 (876)
T 4ecn_A 808 LIQLQIGS 815 (876)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 77776653
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=2.6e-23 Score=193.20 Aligned_cols=229 Identities=17% Similarity=0.144 Sum_probs=149.4
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCC
Q 016371 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLK 205 (390)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~ 205 (390)
.+.++++|++|++++|.+....+.....+++|++|++++|.+.. +|..+. ++|++|++++|.+...++ .+..++
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~ 147 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE---IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLR 147 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS---CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCS
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc---cCcccc--ccCCEEECCCCccCccCHhHhCCCc
Confidence 45667777777777777776655322334777777777777663 332222 677777777777766554 366677
Q ss_pred CccEEEeecccCCHH-HHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCc
Q 016371 206 SIRILVLNCTGVNWM-QVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 206 ~L~~L~L~~~~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
+|++|++++|.++.. ..+..+..+ +|++|++++|.++.++.. + .++|+.|++++|.++..++ ..+..+++|
T Consensus 148 ~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~----~--~~~L~~L~l~~n~i~~~~~-~~l~~l~~L 219 (332)
T 2ft3_A 148 NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD----L--PETLNELHLDHNKIQAIEL-EDLLRYSKL 219 (332)
T ss_dssp SCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS----S--CSSCSCCBCCSSCCCCCCT-TSSTTCTTC
T ss_pred cCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc----c--cCCCCEEECCCCcCCccCH-HHhcCCCCC
Confidence 777777777766421 112222333 677777777777665432 2 1577788888888777654 467777888
Q ss_pred CeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016371 285 EQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 285 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
++|+|++|.++++. +.. +..+++|++|+|++|+|+.++ ..+..+++|++|++++|+|+...
T Consensus 220 ~~L~L~~N~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 220 YRLGLGHNQIRMIE-NGS----------------LSFLPTLRELHLDNNKLSRVP--AGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp SCCBCCSSCCCCCC-TTG----------------GGGCTTCCEEECCSSCCCBCC--TTGGGCTTCCEEECCSSCCCBCC
T ss_pred CEEECCCCcCCcCC-hhH----------------hhCCCCCCEEECCCCcCeecC--hhhhcCccCCEEECCCCCCCccC
Confidence 88888888887763 222 567889999999999999765 56888999999999999998533
Q ss_pred CcchhhhhhhhhcCCceEecCcc
Q 016371 365 RGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 365 ~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
.............+.|+.|+++.
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCS
T ss_pred hhHccccccccccccccceEeec
Confidence 22221111112256778887653
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.3e-23 Score=206.75 Aligned_cols=242 Identities=15% Similarity=0.182 Sum_probs=185.9
Q ss_pred hHHH-HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC
Q 016371 122 DKIQ-DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG 200 (390)
Q Consensus 122 ~~l~-~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~ 200 (390)
..+| ..+..+++|+.|++++|.+...++.....+++|++|+|++|.+.. ..|..+..+++|++|++++|.++..++.
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 141 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNVPLLTVLVLERNDLSSLPRG 141 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC--CCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence 3444 346788999999999999988877333445999999999999887 3345678899999999999999877765
Q ss_pred -CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcC
Q 016371 201 -LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLC 279 (390)
Q Consensus 201 -~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 279 (390)
+..+++|++|++++|.++. ..+..+..+++|++|++++|.+++.+ +..+++|+.|++++|.+++.+
T Consensus 142 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~l~~L~~L~l~~n~l~~l~------ 208 (597)
T 3oja_B 142 IFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD------LSLIPSLFHANVSYNLLSTLA------ 208 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCC------GGGCTTCSEEECCSSCCSEEE------
T ss_pred HhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcC------hhhhhhhhhhhcccCcccccc------
Confidence 5789999999999998875 33444578899999999999988763 456788999999999887643
Q ss_pred CCCCcCeEecCCCccccccCCCCCchhhhhhcccccccC---CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEcc
Q 016371 280 QIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEES---YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLS 356 (390)
Q Consensus 280 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 356 (390)
..++|+.|++++|.++.+. +.....++.+.++.+...+ +..+++|+.|+|++|.|++. .+..+..+++|+.|+|+
T Consensus 209 ~~~~L~~L~ls~n~l~~~~-~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYIS 286 (597)
T ss_dssp CCTTCSEEECCSSCCCEEE-CSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECT
T ss_pred CCchhheeeccCCcccccc-cccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC-CHHHhcCccCCCEEECC
Confidence 3467888888888887764 2222344555555554433 55689999999999999986 34678889999999999
Q ss_pred CCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 357 ENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 357 ~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+|.+.. ++.. ++.+++|+.|+++.
T Consensus 287 ~N~l~~-----l~~~--~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 287 NNRLVA-----LNLY--GQPIPTLKVLDLSH 310 (597)
T ss_dssp TSCCCE-----EECS--SSCCTTCCEEECCS
T ss_pred CCCCCC-----CCcc--cccCCCCcEEECCC
Confidence 999874 5554 57789999998874
No 41
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.89 E-value=1.7e-23 Score=149.48 Aligned_cols=79 Identities=33% Similarity=0.658 Sum_probs=69.5
Q ss_pred CCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCCCCchH
Q 016371 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGISLPE 86 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~~~~~~~ 86 (390)
.+++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|++++++....+|.+
T Consensus 1 d~~~vG~rv~v~g~--~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~c~-~~~G~Fvr~~~v~~~~~~~~ 77 (86)
T 2e3i_A 1 DDFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE-PLKGIFTRPSKLTRKVQAED 77 (86)
T ss_dssp CCCCTTCEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESSCCS-TTCEEEECGGGEESSCCC--
T ss_pred CCccCCCEEEECCC--cEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEECCEEeeecC-CCeEEEEcHHHcccccchhh
Confidence 36899999999764 4699999999999999999999999999999999999999998 59999999999988887776
Q ss_pred HH
Q 016371 87 AL 88 (390)
Q Consensus 87 ~l 88 (390)
+.
T Consensus 78 ~~ 79 (86)
T 2e3i_A 78 EA 79 (86)
T ss_dssp --
T ss_pred hc
Confidence 54
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=3.1e-24 Score=198.18 Aligned_cols=208 Identities=18% Similarity=0.114 Sum_probs=136.7
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHH--------------HHHhcCCCCCEEEcc
Q 016371 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIG--------------AFGEQLPALAVLNLS 190 (390)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~--------------~~~~~l~~L~~L~ls 190 (390)
+..+..+++|+.|++++|.+.+..+ +.. +++|++|++++|.++.+...+ .....+++|++|+++
T Consensus 51 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~-l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~ 128 (317)
T 3o53_A 51 AADLAPFTKLELLNLSSNVLYETLD-LES-LSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128 (317)
T ss_dssp HHHHTTCTTCCEEECTTSCCEEEEE-ETT-CTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECC
T ss_pred HHHhhCCCcCCEEECCCCcCCcchh-hhh-cCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECC
Confidence 4566777778888887777765443 333 466777777776665421000 001234556666666
Q ss_pred CCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCC
Q 016371 191 NNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCI 269 (390)
Q Consensus 191 ~n~l~~~~~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l 269 (390)
+|+++...+ .+..+++|++|++++|.++......+...+++|++|++++|.++..+. ...+++|+.|+|++|.+
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-----QVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-----CCCCTTCCEEECCSSCC
T ss_pred CCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-----ccccccCCEEECCCCcC
Confidence 666665544 455667777777777777643333333456777777777777776632 23467777777877777
Q ss_pred CCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCC
Q 016371 270 AEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPK 349 (390)
Q Consensus 270 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~ 349 (390)
+..++ .+..+++|+.|+|++|.|+.+ |.. +..+++|+.|++++|.+.....+..+..+++
T Consensus 204 ~~l~~--~~~~l~~L~~L~L~~N~l~~l--~~~----------------~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 204 AFMGP--EFQSAAGVTWISLRNNKLVLI--EKA----------------LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp CEECG--GGGGGTTCSEEECTTSCCCEE--CTT----------------CCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred Ccchh--hhcccCcccEEECcCCcccch--hhH----------------hhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 76653 366677788888888877765 444 5678999999999999993234577888999
Q ss_pred CcEEEccCCC
Q 016371 350 LMDIRLSENP 359 (390)
Q Consensus 350 L~~L~l~~n~ 359 (390)
|+.|++++|+
T Consensus 264 L~~l~l~~~~ 273 (317)
T 3o53_A 264 VQTVAKQTVK 273 (317)
T ss_dssp HHHHHHHHHH
T ss_pred ceEEECCCch
Confidence 9999998553
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=8e-24 Score=212.49 Aligned_cols=227 Identities=18% Similarity=0.079 Sum_probs=159.5
Q ss_pred ccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccE
Q 016371 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRI 209 (390)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~ 209 (390)
.+++|+.|++++|...... .+. .+++|++|++++|.++....++..+..+++|++|++++|.+...+..+..+++|++
T Consensus 326 ~l~~L~~L~l~~n~~~~~~-~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF-KKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC-CCC-CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCE
T ss_pred CCCccceeeccCCcCccch-hhc-cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCe
Confidence 4455555555555222211 222 24788888888888875433466778889999999999888776667888889999
Q ss_pred EEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCc-hhhhhcCCCCCcCeEe
Q 016371 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEW-SEILKLCQIRSLEQLY 288 (390)
Q Consensus 210 L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~l~~L~~L~ 288 (390)
|++++|.+........+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++. .+ ..++.+++|++|+
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG---IFLGLTSLNTLKMAGNSFKDNTLS-NVFANTTNLTFLD 479 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT---TTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEE
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchh---hhcCCCCCCEEECCCCcCCCcchH-HhhccCCCCCEEE
Confidence 999988876432223457788899999999988876554 577888899999999888762 22 4677888899999
Q ss_pred cCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcch
Q 016371 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGI 368 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 368 (390)
|++|.++++. |.. +..+++|++|+|++|++++. .+..+..+++|++|++++|+++. +
T Consensus 480 Ls~n~l~~~~-~~~----------------~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~-----~ 536 (606)
T 3vq2_A 480 LSKCQLEQIS-WGV----------------FDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNRIET-----S 536 (606)
T ss_dssp CTTSCCCEEC-TTT----------------TTTCTTCCEEECCSSCCSCE-EGGGTTTCTTCCEEECTTSCCCC-----E
T ss_pred CCCCcCCccC-hhh----------------hcccccCCEEECCCCcCCCc-CHHHccCCCcCCEEECCCCcCcc-----c
Confidence 9999888764 333 56667777777777777775 23566777777777777777763 5
Q ss_pred hhhhhhhhcC-CceEecCcc
Q 016371 369 SRFAIIARLG-KIKILNGSE 387 (390)
Q Consensus 369 ~~~~~i~~l~-~L~~Ln~s~ 387 (390)
|.. ++.++ +|+.|+++.
T Consensus 537 p~~--~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 537 KGI--LQHFPKSLAFFNLTN 554 (606)
T ss_dssp ESC--GGGSCTTCCEEECCS
T ss_pred CHh--HhhhcccCcEEEccC
Confidence 554 56665 477776653
No 44
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.89 E-value=2.2e-23 Score=143.82 Aligned_cols=69 Identities=38% Similarity=0.734 Sum_probs=64.2
Q ss_pred CCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCC
Q 016371 8 SYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (390)
Q Consensus 8 ~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~ 79 (390)
+++||+||.+.++ +.|||||+|++++.+|.|+|||||+|.|||||+++|++||.|. +++|+|++++++.
T Consensus 2 ~~~vG~rv~v~g~--~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~G~rYF~c~-p~~G~Fv~~~kvs 70 (72)
T 3rdv_A 2 DFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE-PLKGIFTRPSKLT 70 (72)
T ss_dssp CCCTTCEEEETTT--EEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCS-TTCEEEECGGGEE
T ss_pred CcccCCEEEECCC--CEEEEEEeeeCCCCCceEEEEEECCCCCccCCEECCEEeCccC-CCCEEEecHHHcc
Confidence 6899999999875 4599999999999999999999999999999999999999997 5999999998874
No 45
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.9e-24 Score=205.21 Aligned_cols=174 Identities=15% Similarity=0.118 Sum_probs=73.6
Q ss_pred hHHHHHHhccccccEeecCCcccCCCCc-ch---hhhcCcccEEECCCCcCCC--------hHHHHHHHhcCCCCCEEEc
Q 016371 122 DKIQDKFSKFEELTSAALPYLGVSSPGA-NI---GTIVTNLKELDLTGNLLSD--------WKDIGAFGEQLPALAVLNL 189 (390)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~---~~~~~~L~~L~Ls~n~l~~--------~~~i~~~~~~l~~L~~L~l 189 (390)
..++..+..+++|+.|+|++|.++...+ .+ ...+++|++|+|++|.+.. +..++..+..+++|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3344445555555555555555544322 11 1123555555555543321 1222233345555555555
Q ss_pred cCCCCCCc----c-CCCCCCCCccEEEeecccCCHHHH---HHHHhcC---------CcccEEeccCCCccccC-CCCCC
Q 016371 190 SNNLMSKE----V-TGLPQLKSIRILVLNCTGVNWMQV---EILKHSL---------PALEELHLMGNSISEIT-PVSSP 251 (390)
Q Consensus 190 s~n~l~~~----~-~~~~~l~~L~~L~L~~~~l~~~~~---~~~~~~l---------~~L~~L~L~~n~l~~~~-~~~~~ 251 (390)
++|.++.. . ..+..+++|++|+|++|.++.... ...+..+ ++|++|++++|.++... +.+..
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 55555441 1 123344555555555555542211 1112222 45555555555554211 10001
Q ss_pred ccCCCCCccEEEcCCCCCCCch---hhh-hcCCCCCcCeEecCCCccc
Q 016371 252 IVQGFDNLQLLNLEDNCIAEWS---EIL-KLCQIRSLEQLYLNKNNLN 295 (390)
Q Consensus 252 ~~~~l~~L~~L~L~~n~l~~~~---~~~-~l~~l~~L~~L~L~~n~l~ 295 (390)
.+..+++|++|+|++|.++... ... .+..+++|++|+|++|.++
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 2334445555555555554211 011 3444555555555555553
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=9.2e-24 Score=198.00 Aligned_cols=228 Identities=19% Similarity=0.198 Sum_probs=174.6
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC--CCCCC
Q 016371 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT--GLPQL 204 (390)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~l 204 (390)
.+..+++|+.|++++|.+....+.....+++|++|++++|.++.+ .+..+..+++|++|++++|+++..+. .+..+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l 148 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL--SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC--CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC--CHhHhCCCccCCEEECCCCCCcccCchhhhccC
Confidence 568899999999999999988764334459999999999999963 23558899999999999999987765 57889
Q ss_pred CCccEEEeeccc-CCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016371 205 KSIRILVLNCTG-VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 205 ~~L~~L~L~~~~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
++|++|++++|. +.. ..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+...+. ..+..+++
T Consensus 149 ~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~ 223 (353)
T 2z80_A 149 TKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYEPK---SLKSIQNVSHLILHMKQHILLLE-IFVDVTSS 223 (353)
T ss_dssp TTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSCSTTHHH-HHHHHTTT
T ss_pred CCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcCccCHH---HHhccccCCeecCCCCccccchh-hhhhhccc
Confidence 999999999984 553 3344457889999999999999988654 68889999999999999987765 44556899
Q ss_pred cCeEecCCCccccccCCCCC-----chhhhhhcccccc---------cCCCCCCCCCEEeCCCCCCCCchhhhhccCCCC
Q 016371 284 LEQLYLNKNNLNRIYYPNND-----TIHELVSAHESHE---------ESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPK 349 (390)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~-----~~~~~~~~~~~~~---------~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~ 349 (390)
|+.|++++|.+++....... ..++.+.+..+.. ..+..+++|++|++++|+|+.++. ..+..+++
T Consensus 224 L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~ 302 (353)
T 2z80_A 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD-GIFDRLTS 302 (353)
T ss_dssp EEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred ccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH-HHHhcCCC
Confidence 99999999999886422110 0111111111111 124567889999999999987652 34578899
Q ss_pred CcEEEccCCCCCC
Q 016371 350 LMDIRLSENPVSD 362 (390)
Q Consensus 350 L~~L~l~~n~l~~ 362 (390)
|++|++++|++..
T Consensus 303 L~~L~L~~N~~~~ 315 (353)
T 2z80_A 303 LQKIWLHTNPWDC 315 (353)
T ss_dssp CCEEECCSSCBCC
T ss_pred CCEEEeeCCCccC
Confidence 9999999999874
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=1.8e-23 Score=194.38 Aligned_cols=226 Identities=19% Similarity=0.174 Sum_probs=179.4
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCC--ccC-CC
Q 016371 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK--EVT-GL 201 (390)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~--~~~-~~ 201 (390)
+..+..+++|++|++++|.+...+..+. ++|++|++++|.+..+ .+..+..+++|++|++++|.++. ..+ .+
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 169 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKV--PKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCC--CSGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred HhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCcc--CHhHhCCCccCCEEECCCCccccCCCCcccc
Confidence 5567899999999999999998776443 7999999999999863 23457899999999999999863 333 45
Q ss_pred CCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCC
Q 016371 202 PQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQI 281 (390)
Q Consensus 202 ~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l 281 (390)
..+ +|++|++++|.++. ++.. ..++|++|++++|.+++..+. .+..+++|+.|+|++|.+++.++ ..+..+
T Consensus 170 ~~l-~L~~L~l~~n~l~~--l~~~--~~~~L~~L~l~~n~i~~~~~~---~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l 240 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTG--IPKD--LPETLNELHLDHNKIQAIELE---DLLRYSKLYRLGLGHNQIRMIEN-GSLSFL 240 (332)
T ss_dssp CSC-CCSCCBCCSSBCSS--CCSS--SCSSCSCCBCCSSCCCCCCTT---SSTTCTTCSCCBCCSSCCCCCCT-TGGGGC
T ss_pred cCC-ccCEEECcCCCCCc--cCcc--ccCCCCEEECCCCcCCccCHH---HhcCCCCCCEEECCCCcCCcCCh-hHhhCC
Confidence 566 99999999999874 3322 237899999999999988654 68889999999999999998765 567889
Q ss_pred CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccC------CCCCcEEEc
Q 016371 282 RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDS------FPKLMDIRL 355 (390)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~------l~~L~~L~l 355 (390)
++|++|+|++|.++.+ |.. +..+++|++|++++|+|++.+. ..+.. .+.|+.|++
T Consensus 241 ~~L~~L~L~~N~l~~l--p~~----------------l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 241 PTLRELHLDNNKLSRV--PAG----------------LPDLKLLQVVYLHTNNITKVGV-NDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp TTCCEEECCSSCCCBC--CTT----------------GGGCTTCCEEECCSSCCCBCCT-TSSSCSSCCSSSCCBSEEEC
T ss_pred CCCCEEECCCCcCeec--Chh----------------hhcCccCCEEECCCCCCCccCh-hHccccccccccccccceEe
Confidence 9999999999999966 665 6778999999999999998643 34432 578999999
Q ss_pred cCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 356 SENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 356 ~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
++||+.... ..+.. +..+++|+.|+++.
T Consensus 302 ~~N~~~~~~--~~~~~--~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 302 FNNPVPYWE--VQPAT--FRCVTDRLAIQFGN 329 (332)
T ss_dssp CSSSSCGGG--SCGGG--GTTBCCSTTEEC--
T ss_pred ecCcccccc--cCccc--ccccchhhhhhccc
Confidence 999987311 12332 67889999988764
No 48
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=3.9e-23 Score=186.96 Aligned_cols=208 Identities=21% Similarity=0.191 Sum_probs=166.3
Q ss_pred ccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEE
Q 016371 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRIL 210 (390)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L 210 (390)
++|++|++++|.+...++.....+++|++|++++|.+..+ .+..+..+++|++|++++|.++...+ .+..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc--CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 4699999999999988773333459999999999999852 23467889999999999999988765 58899999999
Q ss_pred EeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcC----e
Q 016371 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE----Q 286 (390)
Q Consensus 211 ~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~----~ 286 (390)
++++|.+... .+..+..+++|++|++++|.++... ++..+..+++|++|++++|.+++.+. ..+..+++|+ +
T Consensus 106 ~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~--l~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 106 VAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLS 181 (276)
T ss_dssp ECTTSCCCCS-TTCCCTTCTTCCEEECCSSCCCCCC--CCGGGGGCTTCCEEECCSSCCCEECG-GGGHHHHTCTTCCEE
T ss_pred ECCCCCcccc-CchhcccCCCCCEEECcCCccceec--CchhhccCCCCCEEECCCCCCCcCCH-HHhhhhhhcccccee
Confidence 9999988742 2223578899999999999998753 12368889999999999999998754 3444445555 8
Q ss_pred EecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016371 287 LYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 287 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
|++++|.++.+ +.. .....+|++|+|++|+|++++. ..+..+++|++|++++|++..++
T Consensus 182 L~ls~n~l~~~--~~~----------------~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 182 LDLSLNPMNFI--QPG----------------AFKEIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EECCSSCCCEE--CTT----------------SSCSCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSCBCCCT
T ss_pred eecCCCccccc--Ccc----------------ccCCCcccEEECCCCceeecCH-hHhcccccccEEEccCCcccccC
Confidence 99999999987 333 2334589999999999998753 56788999999999999998654
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=4.1e-23 Score=204.87 Aligned_cols=165 Identities=21% Similarity=0.175 Sum_probs=119.8
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCc--cCCCCC
Q 016371 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE--VTGLPQ 203 (390)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~ 203 (390)
..+..+++|++|++++|.+....+.....+++|++|++++|.+.+ ..+..+..+++|++|++++|.++.. ++.+..
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 121 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS--CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc--cCHHHhccCCCCcEEECCCCcccccchhhhhhc
Confidence 457889999999999999998876333345999999999999987 4456689999999999999999853 346889
Q ss_pred CCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016371 204 LKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 204 l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
+++|++|++++|.+.....+..+..+++|++|++++|.+++..+. .+..+++|++|+++.|.+...+. ..+..+++
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~ 197 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ---SLKSIRDIHHLTLHLSESAFLLE-IFADILSS 197 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSBSTTHHH-HHHHSTTT
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh---hhhccccCceEecccCcccccch-hhHhhccc
Confidence 999999999999743222233457889999999999999876544 45666666666666665554433 22234555
Q ss_pred cCeEecCCCcccc
Q 016371 284 LEQLYLNKNNLNR 296 (390)
Q Consensus 284 L~~L~L~~n~l~~ 296 (390)
|++|++++|.+++
T Consensus 198 L~~L~L~~n~l~~ 210 (549)
T 2z81_A 198 VRYLELRDTNLAR 210 (549)
T ss_dssp BSEEEEESCBCTT
T ss_pred ccEEEccCCcccc
Confidence 5555555555544
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=2.9e-22 Score=194.89 Aligned_cols=234 Identities=22% Similarity=0.274 Sum_probs=119.3
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016371 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+..+++|++|++++|.+...++ +.. +++|++|++++|.+.... . +..+++|++|++++|.+....+ +..+++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~-l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 136 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKN-LTKLVDILMNNNQIADIT---P-LANLTNLTGLTLFNNQITDIDP-LKNLTNL 136 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTT-CTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred hhhhcCCCEEECCCCccCCchh-hhc-cccCCEEECCCCccccCh---h-hcCCCCCCEEECCCCCCCCChH-HcCCCCC
Confidence 5667777777777777776654 333 477777777777776532 2 5667777777777776665433 5566666
Q ss_pred cEEEeecccCCHHHHHHH--------------------HhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCC
Q 016371 208 RILVLNCTGVNWMQVEIL--------------------KHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDN 267 (390)
Q Consensus 208 ~~L~L~~~~l~~~~~~~~--------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n 267 (390)
++|++++|.+.. ++.+ +..+++|++|++++|.++... .+..+++|+.|++++|
T Consensus 137 ~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 137 NRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-----VLAKLTNLESLIATNN 209 (466)
T ss_dssp SEEEEEEEEECC--CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSS
T ss_pred CEEECCCCccCC--ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-----hhccCCCCCEEEecCC
Confidence 666666665542 1110 234455555555555554432 1334444444444444
Q ss_pred CCCCchhh-------------------hhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccC---CCCCCCC
Q 016371 268 CIAEWSEI-------------------LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEES---YLPFQNL 325 (390)
Q Consensus 268 ~l~~~~~~-------------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L 325 (390)
.+.+..++ ..+..+++|+.|++++|.+++.........++.+..+.+...+ +..+++|
T Consensus 210 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L 289 (466)
T 1o6v_A 210 QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 289 (466)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred cccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCcc
Confidence 44443320 1233344444444444444443211111222333333332221 2334555
Q ss_pred CEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016371 326 CCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 326 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
++|++++|++++++. +..+++|++|++++|.+.+ .+. ++.+++|+.|+++
T Consensus 290 ~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~-----~~~---~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 290 TNLELNENQLEDISP---ISNLKNLTYLTLYFNNISD-----ISP---VSSLTKLQRLFFY 339 (466)
T ss_dssp SEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSC-----CGG---GGGCTTCCEEECC
T ss_pred CeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCC-----chh---hccCccCCEeECC
Confidence 555555555555431 4455556666666665553 111 4556666666654
No 51
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.4e-23 Score=193.24 Aligned_cols=209 Identities=17% Similarity=0.173 Sum_probs=163.9
Q ss_pred ccccccEeecCCcccCCCCc-chh-hhcCcccEEECCCCcCCChHH-HH-HHHhcCCCCCEEEccCCCCCCccC-CCCCC
Q 016371 130 KFEELTSAALPYLGVSSPGA-NIG-TIVTNLKELDLTGNLLSDWKD-IG-AFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (390)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~-~~~-~~~~~L~~L~Ls~n~l~~~~~-i~-~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l 204 (390)
.+++|++|++++|.+.+..+ .+. ..+++|++|++++|.+..... ++ ..+..+++|++|++++|++...++ .+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 45679999999999988776 432 446999999999999986211 11 334589999999999999988776 68899
Q ss_pred CCccEEEeecccCCHHH-HH--HHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCC-
Q 016371 205 KSIRILVLNCTGVNWMQ-VE--ILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ- 280 (390)
Q Consensus 205 ~~L~~L~L~~~~l~~~~-~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~- 280 (390)
++|++|++++|.+.... ++ ..+..+++|++|++++|.++.........+..+++|++|+|++|.+++..+ ..+..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN-PSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-SCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch-hhHHhc
Confidence 99999999999987421 22 223578999999999999975532101124677999999999999998733 23444
Q ss_pred --CCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCC
Q 016371 281 --IRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 281 --l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n 358 (390)
+++|++|+|++|.|+.+ |.. + +++|++|+|++|+|++++. +..+++|+.|++++|
T Consensus 248 ~~~~~L~~L~Ls~N~l~~l--p~~----------------~--~~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQV--PKG----------------L--PAKLRVLDLSSNRLNRAPQ---PDELPEVDNLTLDGN 304 (310)
T ss_dssp CCCTTCCCEECCSSCCCSC--CSC----------------C--CSCCSCEECCSCCCCSCCC---TTSCCCCSCEECSST
T ss_pred cCcCcCCEEECCCCCCCch--hhh----------------h--cCCCCEEECCCCcCCCCch---hhhCCCccEEECcCC
Confidence 47999999999999966 554 2 3799999999999998753 577899999999999
Q ss_pred CCCC
Q 016371 359 PVSD 362 (390)
Q Consensus 359 ~l~~ 362 (390)
+|++
T Consensus 305 ~l~~ 308 (310)
T 4glp_A 305 PFLV 308 (310)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 9985
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=1.5e-22 Score=208.71 Aligned_cols=244 Identities=16% Similarity=0.155 Sum_probs=174.1
Q ss_pred HHHHHh--ccccccEeecCCcccCCCCc-chhhhcCcccEEECCCCc-CCChHHHHHHHhcCC-------CCCEEEccCC
Q 016371 124 IQDKFS--KFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNL-LSDWKDIGAFGEQLP-------ALAVLNLSNN 192 (390)
Q Consensus 124 l~~~~~--~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~-l~~~~~i~~~~~~l~-------~L~~L~ls~n 192 (390)
+|..+. ++++|+.|+|++|.+.+..+ .+.. +++|+.|+|++|. +++ ..+|..+..++ +|++|++++|
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg-~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISA-AQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCH-HHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCccc-ccchHHHHhhhhcccccCCccEEEeeCC
Confidence 888877 99999999999999877766 4554 5999999999998 763 24777666665 9999999999
Q ss_pred CCCCccC--CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCC-ccEEEcCCCCC
Q 016371 193 LMSKEVT--GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDN-LQLLNLEDNCI 269 (390)
Q Consensus 193 ~l~~~~~--~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~-L~~L~L~~n~l 269 (390)
.++..+. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.++.++. .+..+++ |+.|+|++|.+
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~----~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPE----DFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCT----TSCEECTTCCEEECCSSCC
T ss_pred cCCccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchH----HHhhccccCCEEECcCCCC
Confidence 9995555 5889999999999999998 455 56889999999999999985433 4777788 99999999988
Q ss_pred CCchhhhhcCCC--CCcCeEecCCCcccccc---------------------------CCCC----Cchhhhhhcccccc
Q 016371 270 AEWSEILKLCQI--RSLEQLYLNKNNLNRIY---------------------------YPNN----DTIHELVSAHESHE 316 (390)
Q Consensus 270 ~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~---------------------------~~~~----~~~~~~~~~~~~~~ 316 (390)
+..+. .+..+ ++|+.|+|++|.+++.. +|.. ...++.+.++.|..
T Consensus 632 ~~lp~--~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 632 KYIPN--IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CSCCS--CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred CcCch--hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence 86553 23332 23666666666554421 0111 11223334444433
Q ss_pred cCCC------------CCCCCCEEeCCCCCCCCchhhhhcc--CCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceE
Q 016371 317 ESYL------------PFQNLCCLLLGNNMIEDLASIDSLD--SFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKI 382 (390)
Q Consensus 317 ~~~~------------~~~~L~~L~L~~N~i~~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~ 382 (390)
..+. .+++|+.|+|++|+|+.++ ..+. .+++|+.|+|++|.+.. +|.. ++.+++|+.
T Consensus 710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp--~~l~~~~l~~L~~L~Ls~N~L~~-----lp~~--l~~L~~L~~ 780 (876)
T 4ecn_A 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS--DDFRATTLPYLSNMDVSYNCFSS-----FPTQ--PLNSSQLKA 780 (876)
T ss_dssp SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC--GGGSTTTCTTCCEEECCSSCCSS-----CCCG--GGGCTTCCE
T ss_pred CccChHHhccccccccccCCccEEECCCCCCccch--HHhhhccCCCcCEEEeCCCCCCc-----cchh--hhcCCCCCE
Confidence 2221 1127777777777777654 4554 77888888888888773 5555 678888888
Q ss_pred ecCcc
Q 016371 383 LNGSE 387 (390)
Q Consensus 383 Ln~s~ 387 (390)
|+++.
T Consensus 781 L~Ls~ 785 (876)
T 4ecn_A 781 FGIRH 785 (876)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 87753
No 53
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=99.88 E-value=2.3e-23 Score=151.90 Aligned_cols=74 Identities=39% Similarity=0.719 Sum_probs=66.4
Q ss_pred CCCCCCCEEEeC--CCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016371 7 ESYKLGQRVHSA--NDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 7 ~~~~~g~~v~~~--~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~~ 81 (390)
..++||+||.+. +...+.|||||+|++++.+|.|+|||||+|.|||||+++|+|||.|. +++|.|+++.++..+
T Consensus 10 ~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~G~Fvr~~~v~~g 85 (95)
T 1lpl_A 10 KNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCD-PKYGGFVRPVDVKVG 85 (95)
T ss_dssp HTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCC-TTSEEEECGGGEEES
T ss_pred hcCCCCCEEEEccCCCCceEEEEEEecccCCCCCEEEEEEccCCCCccCCEECCEEEeEeC-CCEEEEEcHHHceEC
Confidence 578999999997 31135699999999999999999999999999999999999999995 599999999998766
No 54
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.7e-22 Score=182.46 Aligned_cols=196 Identities=21% Similarity=0.230 Sum_probs=101.5
Q ss_pred ccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC-CCCCCCcc
Q 016371 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LPQLKSIR 208 (390)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~l~~L~ 208 (390)
.+++|+.|+++++.+.... .+.. +++|++|++++|.+.++ ..+..+++|++|++++|.++...+. +..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~-l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQY-LPNVRYLALGGNKLHDI----SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGG-CTTCCEEECTTSCCCCC----GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccceeeeeeCCCCccccc-cccc-CCCCcEEECCCCCCCCc----hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3455566666666555443 2222 36666666666665542 1345566666666666666554442 45555666
Q ss_pred EEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEe
Q 016371 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (390)
Q Consensus 209 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 288 (390)
+|++++|.++. ..+..+..+++|++|++++|.+++.++. .+..+++|+.|++++|.+++.++ ..++.+++|++|+
T Consensus 113 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 113 ELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKG---VFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLR 187 (272)
T ss_dssp EEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEE
T ss_pred EEECCCCcCCc-cCHHHhccCCCCCEEECCCCccCccCHH---HhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEE
Confidence 66666655542 2222234555555566655555544432 34455555555555555555443 3345555555555
Q ss_pred cCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016371 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
+++|.++++. +.. +..+++|+.|++++|.+.. .+++|+.|++..|.++
T Consensus 188 L~~N~l~~~~-~~~----------------~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 188 LYQNQLKSVP-DGV----------------FDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHS 235 (272)
T ss_dssp CCSSCCSCCC-TTT----------------TTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTG
T ss_pred CCCCcCCccC-HHH----------------HhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCC
Confidence 5555555542 111 3445555555555554432 2444555555555554
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.4e-23 Score=204.93 Aligned_cols=218 Identities=18% Similarity=0.215 Sum_probs=179.2
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCC
Q 016371 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQL 204 (390)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l 204 (390)
|..+..+++|+.|+|++|.+++..+ +.. +++|++|+|++|.++++ ...++|++|++++|.+++.++. .+
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~-l~~L~~L~Ls~N~l~~l-------~~~~~L~~L~L~~N~l~~~~~~--~l 119 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNVLYETLD-LES-LSTLRTLDLNNNYVQEL-------LVGPSIETLHAANNNISRVSCS--RG 119 (487)
T ss_dssp GGGGTTCTTCCEEECTTSCCEEEEE-CTT-CTTCCEEECCSSEEEEE-------EECTTCCEEECCSSCCCCEEEC--CC
T ss_pred HHHHhCCCCCCEEEeeCCCCCCCcc-ccc-CCCCCEEEecCCcCCCC-------CCCCCcCEEECcCCcCCCCCcc--cc
Confidence 4578899999999999999987654 444 59999999999999863 2458999999999999887653 46
Q ss_pred CCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccC-CCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016371 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQ-GFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
++|++|++++|.++. ..+..+..+++|++|++++|.+++..+. .+. .+++|+.|+|++|.+++.+. ...+++
T Consensus 120 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~ 192 (487)
T 3oja_A 120 QGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFIYDVKG---QVVFAK 192 (487)
T ss_dssp SSCEEEECCSSCCCS-GGGBCGGGGSSEEEEECTTSCCCEEEGG---GGGGGTTTCCEEECTTSCCCEEEC---CCCCTT
T ss_pred CCCCEEECCCCCCCC-CCchhhcCCCCCCEEECCCCCCCCcChH---HHhhhCCcccEEecCCCccccccc---cccCCC
Confidence 889999999999986 3344457889999999999999987543 343 78999999999999998753 456899
Q ss_pred cCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCC
Q 016371 284 LEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 363 (390)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 363 (390)
|+.|+|++|.|+++ |.. +..+++|+.|+|++|.|+++| ..+..+++|+.|++++|++..
T Consensus 193 L~~L~Ls~N~l~~~--~~~----------------~~~l~~L~~L~Ls~N~l~~lp--~~l~~l~~L~~L~l~~N~l~c- 251 (487)
T 3oja_A 193 LKTLDLSSNKLAFM--GPE----------------FQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFHC- 251 (487)
T ss_dssp CCEEECCSSCCCEE--CGG----------------GGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCCBCH-
T ss_pred CCEEECCCCCCCCC--CHh----------------HcCCCCccEEEecCCcCcccc--hhhccCCCCCEEEcCCCCCcC-
Confidence 99999999999987 443 567899999999999999876 568889999999999999973
Q ss_pred CCcchhhhhhhhhcCCceEecC
Q 016371 364 GRGGISRFAIIARLGKIKILNG 385 (390)
Q Consensus 364 ~~~~~~~~~~i~~l~~L~~Ln~ 385 (390)
+.++.+ ++.++.|+.|+.
T Consensus 252 --~~~~~~--~~~l~~L~~l~~ 269 (487)
T 3oja_A 252 --GTLRDF--FSKNQRVQTVAK 269 (487)
T ss_dssp --HHHHHH--HTTCHHHHHHHH
T ss_pred --cchHHH--HHhCCCCcEEec
Confidence 335554 677777776655
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=5.1e-23 Score=202.91 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=88.1
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCc-c-CCCC
Q 016371 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE-V-TGLP 202 (390)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~-~-~~~~ 202 (390)
+..+..+++|++|++++|.+....+.....+++|++|+|++|.++. +|.. .+++|++|++++|.+++. . ..+.
T Consensus 38 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~ 112 (520)
T 2z7x_B 38 TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK---ISCH--PTVNLKHLDLSFNAFDALPICKEFG 112 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE---EECC--CCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee---cCcc--ccCCccEEeccCCccccccchhhhc
Confidence 4678899999999999999988766333445999999999999884 4443 789999999999999863 3 3688
Q ss_pred CCCCccEEEeecccCCHHHHHHHHhcCCcc--cEEeccCCCc
Q 016371 203 QLKSIRILVLNCTGVNWMQVEILKHSLPAL--EELHLMGNSI 242 (390)
Q Consensus 203 ~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L--~~L~L~~n~l 242 (390)
.+++|++|++++|.++.. .+..+++| ++|++++|.+
T Consensus 113 ~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 113 NMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp GCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTT
T ss_pred cCCcceEEEecCcccchh----hccccccceeeEEEeecccc
Confidence 899999999999998752 23667777 9999999988
No 57
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.87 E-value=1.6e-22 Score=146.87 Aligned_cols=74 Identities=36% Similarity=0.619 Sum_probs=67.7
Q ss_pred CCCCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016371 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 5 ~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~~ 81 (390)
.|..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|+++.++...
T Consensus 15 ~~~~~~vG~rV~V~g~--~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~G~Fvr~~kv~~~ 88 (95)
T 2cp2_A 15 FLGDFVVGERVWVNGV--KPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECP-ALQGIFTRPSKLTRQ 88 (95)
T ss_dssp SCCSCCTTCEEEGGGS--CEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEETTEECCCCC-TTTEEEECGGGCCSS
T ss_pred hhhcCcCCCEEEECCc--eEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEecccC-CCeEEEEcHHHCccC
Confidence 4678999999999864 4599999999999999999999999999999999999999998 599999999988654
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=3.3e-23 Score=208.01 Aligned_cols=240 Identities=17% Similarity=0.156 Sum_probs=177.4
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016371 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+..+++|+.++++++.+...+ .+.. +++|+.|++++|.+. .+|. + .+++|++|++++|...... .+..+++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~~-~~~L~~L~l~~n~l~---~lp~-~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L 352 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVPK-HFKWQSLSIIRCQLK---QFPT-L-DLPFLKSLTLTMNKGSISF-KKVALPSL 352 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCCT-TCCCSEEEEESCCCS---SCCC-C-CCSSCCEEEEESCSSCEEC-CCCCCTTC
T ss_pred cccCCCCCEEEecCccchhhh-hccc-cccCCEEEcccccCc---cccc-C-CCCccceeeccCCcCccch-hhccCCCC
Confidence 778888999999998887766 4444 488999999998885 4553 3 8888999999888554333 56678888
Q ss_pred cEEEeecccCCHHH-HHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCe
Q 016371 208 RILVLNCTGVNWMQ-VEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (390)
Q Consensus 208 ~~L~L~~~~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 286 (390)
++|++++|.++... .+..+..+++|++|++++|.++..+. .+..+++|+.|++++|.+.+..+...+..+++|++
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA----NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECC----CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchh----hccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 88888888876321 14445788888888888888877653 46777888888888888777654345677788888
Q ss_pred EecCCCccccccCCCCC---chhhhhhccccccc------CCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccC
Q 016371 287 LYLNKNNLNRIYYPNND---TIHELVSAHESHEE------SYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSE 357 (390)
Q Consensus 287 L~L~~n~l~~~~~~~~~---~~~~~~~~~~~~~~------~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~ 357 (390)
|++++|.++... |..+ ..++.+..+.+... .+..+++|++|+|++|++++.+ +..+..+++|++|++++
T Consensus 429 L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 429 LDISYTNTKIDF-DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp EECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCS
T ss_pred EECcCCCCCccc-hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC-hhhhcccccCCEEECCC
Confidence 888888877653 3222 23344444444332 3677899999999999999863 46788999999999999
Q ss_pred CCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 358 NPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 358 n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|++.+ ..|.. ++.+++|+.|+++.
T Consensus 507 N~l~~----~~~~~--~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 507 NNLLF----LDSSH--YNQLYSLSTLDCSF 530 (606)
T ss_dssp SCCSC----EEGGG--TTTCTTCCEEECTT
T ss_pred CcCCC----cCHHH--ccCCCcCCEEECCC
Confidence 99984 34555 78899999998874
No 59
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.2e-22 Score=185.22 Aligned_cols=234 Identities=18% Similarity=0.187 Sum_probs=180.5
Q ss_pred HHHHhcc--ccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CC
Q 016371 125 QDKFSKF--EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GL 201 (390)
Q Consensus 125 ~~~~~~l--~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~ 201 (390)
+..+..+ ++++.++++++.+.+..+.+.. +++|++|++++|.+.+ ..++..+..+++|++|++++|.++...+ .+
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~~~l~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l 138 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEV-STLHGILSQCSKLQNLSLEGLRLSDPIVNTL 138 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCSCCC-CBCCCEEECTTCEECH-HHHHHHHTTBCCCSEEECTTCBCCHHHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccchhhcc-CCCCCEEEccCCCcCH-HHHHHHHhhCCCCCEEeCcCcccCHHHHHHH
Confidence 4455566 8899999999999888776655 5999999999999875 2388889999999999999999876544 57
Q ss_pred CCCCCccEEEeecc-cCCHHHHHHHHhcCCcccEEeccCC-CccccCCCCCCccCCCC-CccEEEcCCC--CCCCchhhh
Q 016371 202 PQLKSIRILVLNCT-GVNWMQVEILKHSLPALEELHLMGN-SISEITPVSSPIVQGFD-NLQLLNLEDN--CIAEWSEIL 276 (390)
Q Consensus 202 ~~l~~L~~L~L~~~-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~-~L~~L~L~~n--~l~~~~~~~ 276 (390)
..+++|++|++++| .++...++..+..+++|++|++++| .+++... +..+..++ +|++|++++| .+++.....
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV--QVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH--HHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH--HHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 78999999999999 7887678888899999999999999 8875321 12467788 9999999999 455322224
Q ss_pred hcCCCCCcCeEecCCCc-cccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCC-CCCCchhhhhccCCCCCcEEE
Q 016371 277 KLCQIRSLEQLYLNKNN-LNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNN-MIEDLASIDSLDSFPKLMDIR 354 (390)
Q Consensus 277 ~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~ 354 (390)
.+..+++|++|++++|. +++...+ . +..+++|++|++++| .+++. .+..+..+++|++|+
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~-~----------------l~~l~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQ-E----------------FFQLNYLQHLSLSRCYDIIPE-TLLELGEIPTLKTLQ 278 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGG-G----------------GGGCTTCCEEECTTCTTCCGG-GGGGGGGCTTCCEEE
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHH-H----------------HhCCCCCCEeeCCCCCCCCHH-HHHHHhcCCCCCEEe
Confidence 56679999999999999 6654322 2 567799999999999 45443 345688899999999
Q ss_pred ccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 355 LSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 355 l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+++| +.+. .+.. +...+++|+ ++...
T Consensus 279 l~~~-i~~~---~~~~--l~~~l~~L~-l~~n~ 304 (336)
T 2ast_B 279 VFGI-VPDG---TLQL--LKEALPHLQ-INCSH 304 (336)
T ss_dssp CTTS-SCTT---CHHH--HHHHSTTSE-ESCCC
T ss_pred ccCc-cCHH---HHHH--HHhhCcceE-Eeccc
Confidence 9999 6542 2332 134578776 44433
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=2.7e-22 Score=188.02 Aligned_cols=229 Identities=16% Similarity=0.150 Sum_probs=129.9
Q ss_pred ccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCcc
Q 016371 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIR 208 (390)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~ 208 (390)
.++.....+++++.++.++..+. ++|++|++++|.++.+ .+..+..+++|++|++++|.++...+ .+..+++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYI--SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCccccccccc---ccCcEEECCCCcCccc--CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 34444455666666666554332 4666666666666641 12245666666666666666665544 356666666
Q ss_pred EEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCC-CCCchhhhhcCCCCCcCeE
Q 016371 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNC-IAEWSEILKLCQIRSLEQL 287 (390)
Q Consensus 209 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L 287 (390)
+|++++|.++. ..+..+..+++|++|++++|.++.++.. ..+..+++|+.|++++|. +...++ ..++.+++|++|
T Consensus 104 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L 179 (353)
T 2z80_A 104 HLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGET--SLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEEL 179 (353)
T ss_dssp EEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSS--CSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEE
T ss_pred EEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCch--hhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEE
Confidence 66666666653 2233345666666666666666655430 135566666666666663 444432 445566666666
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCC--
Q 016371 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGR-- 365 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-- 365 (390)
++++|.+++.. |.. +..+++|++|++++|+++..+. ..+..+++|++|++++|.+.....
T Consensus 180 ~l~~n~l~~~~-~~~----------------l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 180 EIDASDLQSYE-PKS----------------LKSIQNVSHLILHMKQHILLLE-IFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp EEEETTCCEEC-TTT----------------TTTCSEEEEEEEECSCSTTHHH-HHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred ECCCCCcCccC-HHH----------------HhccccCCeecCCCCccccchh-hhhhhcccccEEECCCCccccccccc
Confidence 66666666553 222 4455566666666666555431 223345566666666665553211
Q ss_pred -------------------------cchhhhhhhhhcCCceEecCcc
Q 016371 366 -------------------------GGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 366 -------------------------~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
..+|.. ++.+++|+.|+++.
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~--l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKL--LNQISGLLELEFSR 286 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHH--HHTCTTCCEEECCS
T ss_pred cccccccchhhccccccccccCcchhhhHHH--HhcccCCCEEECCC
Confidence 123443 67788888888764
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=3.2e-23 Score=190.95 Aligned_cols=201 Identities=20% Similarity=0.126 Sum_probs=114.4
Q ss_pred CcccEEECCCCcCCChHHHHHHH--hcCCCCCEEEccCCCCCCccCCCCCC-----CCccEEEeecccCCHHHHHHHHhc
Q 016371 156 TNLKELDLTGNLLSDWKDIGAFG--EQLPALAVLNLSNNLMSKEVTGLPQL-----KSIRILVLNCTGVNWMQVEILKHS 228 (390)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~i~~~~--~~l~~L~~L~ls~n~l~~~~~~~~~l-----~~L~~L~L~~~~l~~~~~~~~~~~ 228 (390)
++|++|++++|.+++ .+|..+ ..+++|++|++++|++++.+..+..+ ++|++|++++|.+.. ..+..+..
T Consensus 95 ~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~ 171 (312)
T 1wwl_A 95 SGLQELTLENLEVTG--TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRV 171 (312)
T ss_dssp SCCCEEEEEEEBCBS--CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTCCC
T ss_pred CCccEEEccCCcccc--hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHhcc
Confidence 556666666665554 233332 45556666666666555542222222 556666666665543 12223345
Q ss_pred CCcccEEeccCCCccccCCCC-CCccCCCCCccEEEcCCCCCCCchhh--hhcCCCCCcCeEecCCCccccccCCCCCch
Q 016371 229 LPALEELHLMGNSISEITPVS-SPIVQGFDNLQLLNLEDNCIAEWSEI--LKLCQIRSLEQLYLNKNNLNRIYYPNNDTI 305 (390)
Q Consensus 229 l~~L~~L~L~~n~l~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 305 (390)
+++|++|++++|.+.+..+.. ...+..+++|++|+|++|.++..+.+ ..+..+++|++|+|++|.+++......
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--- 248 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS--- 248 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC---
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh---
Confidence 556666666666544321000 00124455666666666666543322 222345566666666666655421111
Q ss_pred hhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecC
Q 016371 306 HELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 385 (390)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 385 (390)
+..+++|++|+|++|+|+.++ ..+. ++|++|++++|.|++ +|. ++.+++|+.|++
T Consensus 249 -------------~~~l~~L~~L~Ls~N~l~~ip--~~~~--~~L~~L~Ls~N~l~~-----~p~---~~~l~~L~~L~L 303 (312)
T 1wwl_A 249 -------------CDWPSQLNSLNLSFTGLKQVP--KGLP--AKLSVLDLSYNRLDR-----NPS---PDELPQVGNLSL 303 (312)
T ss_dssp -------------CCCCTTCCEEECTTSCCSSCC--SSCC--SEEEEEECCSSCCCS-----CCC---TTTSCEEEEEEC
T ss_pred -------------hhhcCCCCEEECCCCccChhh--hhcc--CCceEEECCCCCCCC-----Chh---HhhCCCCCEEec
Confidence 345689999999999999765 3444 899999999999985 343 678999999988
Q ss_pred cc
Q 016371 386 SE 387 (390)
Q Consensus 386 s~ 387 (390)
+.
T Consensus 304 ~~ 305 (312)
T 1wwl_A 304 KG 305 (312)
T ss_dssp TT
T ss_pred cC
Confidence 64
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.5e-21 Score=187.43 Aligned_cols=189 Identities=21% Similarity=0.186 Sum_probs=119.0
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCC
Q 016371 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (390)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~ 206 (390)
.+..+++|++|++++|.+++.+ +.. +++|++|++++|.++++ + +..+++|++|++++|++++. .+..+++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~-l~~L~~L~Ls~N~l~~~---~--~~~l~~L~~L~L~~N~l~~l--~~~~l~~ 128 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD--LSQ-NTNLTYLACDSNKLTNL---D--VTPLTKLTYLNCDTNKLTKL--DVSQNPL 128 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC--CTT-CTTCSEEECCSSCCSCC---C--CTTCTTCCEEECCSSCCSCC--CCTTCTT
T ss_pred hhcccCCCCEEEccCCcCCeEc--ccc-CCCCCEEECcCCCCcee---e--cCCCCcCCEEECCCCcCCee--cCCCCCc
Confidence 3555666666666666665542 322 36666666666666542 1 45566666666666666543 2555666
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCe
Q 016371 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (390)
Q Consensus 207 L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 286 (390)
|++|++++|.++.. + +..+++|++|++++|...+.. .+..+++|+.|++++|.+++.+ ++.+++|+.
T Consensus 129 L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~ 195 (457)
T 3bz5_A 129 LTYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKL-----DVTPQTQLTTLDCSFNKITELD----VSQNKLLNR 195 (457)
T ss_dssp CCEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCC-----CCTTCTTCCEEECCSSCCCCCC----CTTCTTCCE
T ss_pred CCEEECCCCcccee--c--cccCCcCCEEECCCCCccccc-----ccccCCcCCEEECCCCccceec----cccCCCCCE
Confidence 66666666665531 1 345566666666666332221 1445566666666666666532 455666666
Q ss_pred EecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016371 287 LYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 287 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
|++++|.++++. +..+++|++|++++|++++++ +..+++|+.|++++|++..
T Consensus 196 L~l~~N~l~~~~--------------------l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 196 LNCDTNNITKLD--------------------LNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp EECCSSCCSCCC--------------------CTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSC
T ss_pred EECcCCcCCeec--------------------cccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCC
Confidence 666666666541 567899999999999999964 7789999999999999985
No 63
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.87 E-value=2.9e-22 Score=142.41 Aligned_cols=71 Identities=39% Similarity=0.730 Sum_probs=65.1
Q ss_pred CCCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCC
Q 016371 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~ 79 (390)
...++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|++++++.
T Consensus 5 ~~~~~vG~rv~v~g~--~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~G~rYF~c~-~~~G~Fv~~~kv~ 75 (84)
T 2cp3_A 5 SSGLRLGDRVLVGGT--KTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCP-PKFGLFAPIHKVI 75 (84)
T ss_dssp SCSCCTTCEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESSCCC-TTTEEEEEGGGEE
T ss_pred ccccccCCEEEECCC--CeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecC-CCeEEEEcHHHeE
Confidence 367999999999764 4599999999999999999999999999999999999999997 5899999998774
No 64
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=1e-21 Score=199.77 Aligned_cols=159 Identities=24% Similarity=0.172 Sum_probs=74.1
Q ss_pred ccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEE
Q 016371 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRIL 210 (390)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L 210 (390)
++++.|++++|.+...++.....+++|++|++++|.+.. ..|..+.++++|++|++++|.++..++ .+..+++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK--LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC--CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc--cCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 345555555555555444222223555555555555544 223444455555555555555544433 24455555555
Q ss_pred EeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhc--CCCCCcCeEe
Q 016371 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL--CQIRSLEQLY 288 (390)
Q Consensus 211 ~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l--~~l~~L~~L~ 288 (390)
++++|.++. ..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+ ..+ ..+++|++|+
T Consensus 103 ~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 103 HLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLG---TQVQLENLQELLLSNNKIQALKS-EELDIFANSSLKKLE 177 (680)
T ss_dssp ECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCC---SSSCCTTCCEEECCSSCCCCBCH-HHHGGGTTCEESEEE
T ss_pred ECCCCccCc-cChhHccccCCCCEEECCCCcccccCch---hhcccccCCEEEccCCcccccCH-HHhhccccccccEEE
Confidence 555554442 1112234455555555555555444322 34445555555555555544432 111 1334555555
Q ss_pred cCCCccccc
Q 016371 289 LNKNNLNRI 297 (390)
Q Consensus 289 L~~n~l~~~ 297 (390)
+++|.++++
T Consensus 178 L~~n~l~~~ 186 (680)
T 1ziw_A 178 LSSNQIKEF 186 (680)
T ss_dssp CTTCCCCCB
T ss_pred CCCCccccc
Confidence 555554443
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.1e-21 Score=188.02 Aligned_cols=209 Identities=21% Similarity=0.169 Sum_probs=128.5
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016371 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+..+++|++|++++|.+.+.+ +.. +++|++|++++|.++.+ + +..+++|++|++++|++++. .+..+++|
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~--~~~-l~~L~~L~L~~N~l~~l---~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L 150 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD--VTP-LTKLTYLNCDTNKLTKL---D--VSQNPLLTYLNCARNTLTEI--DVSHNTQL 150 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--CTT-CTTCCEEECCSSCCSCC---C--CTTCTTCCEEECTTSCCSCC--CCTTCTTC
T ss_pred cccCCCCCEEECcCCCCceee--cCC-CCcCCEEECCCCcCCee---c--CCCCCcCCEEECCCCcccee--ccccCCcC
Confidence 566677777777777776653 333 47777777777777653 2 56677777777777777654 35666777
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeE
Q 016371 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (390)
Q Consensus 208 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 287 (390)
++|++++|.... .+ .+..+++|++|++++|.+++++ +..+++|+.|++++|.+++. .++.+++|+.|
T Consensus 151 ~~L~l~~n~~~~-~~--~~~~l~~L~~L~ls~n~l~~l~------l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L 217 (457)
T 3bz5_A 151 TELDCHLNKKIT-KL--DVTPQTQLTTLDCSFNKITELD------VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFL 217 (457)
T ss_dssp CEEECTTCSCCC-CC--CCTTCTTCCEEECCSSCCCCCC------CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEE
T ss_pred CEEECCCCCccc-cc--ccccCCcCCEEECCCCccceec------cccCCCCCEEECcCCcCCee----ccccCCCCCEE
Confidence 777777773221 11 1356677777777777776642 45566777777777777664 25666777777
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCC--
Q 016371 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGR-- 365 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-- 365 (390)
++++|+++++ | +..+++|+.|++++|++++.+ +..+++|+.|++++|.+.....
T Consensus 218 ~Ls~N~l~~i--p------------------~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~ 273 (457)
T 3bz5_A 218 DCSSNKLTEI--D------------------VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTDLLEIDLTH 273 (457)
T ss_dssp ECCSSCCSCC--C------------------CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTTCCCSCCCCTT
T ss_pred ECcCCccccc--C------------------ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccCCCCCEEECCC
Confidence 7777777764 3 245567777777777777653 3345555555444444432110
Q ss_pred ----cchhhhhhhhhcCCceEecCcc
Q 016371 366 ----GGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 366 ----~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+.+| .+.+++|+.|+++.
T Consensus 274 n~~~~~~~----~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 274 NTQLIYFQ----AEGCRKIKELDVTH 295 (457)
T ss_dssp CTTCCEEE----CTTCTTCCCCCCTT
T ss_pred CccCCccc----ccccccCCEEECCC
Confidence 1222 34567777777664
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=8.5e-22 Score=177.78 Aligned_cols=204 Identities=20% Similarity=0.237 Sum_probs=167.5
Q ss_pred cccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEE
Q 016371 131 FEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL 210 (390)
Q Consensus 131 l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L 210 (390)
+.++..+++..+.+.... .... +++|+.|++++|.+..+. .+..+++|++|++++|.+.+. +.+..+++|++|
T Consensus 18 ~~~l~~l~l~~~~~~~~~-~~~~-l~~L~~L~l~~~~i~~~~----~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L 90 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV-TQNE-LNSIDQIIANNSDIKSVQ----GIQYLPNVRYLALGGNKLHDI-SALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHH-HTTCCEEECTTSCCCCCT----TGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEE
T ss_pred HHHHHHHHhcCccccccc-cccc-ccceeeeeeCCCCccccc----ccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEE
Confidence 334555677777666543 3344 499999999999998743 367899999999999999874 578899999999
Q ss_pred EeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecC
Q 016371 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLN 290 (390)
Q Consensus 211 ~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 290 (390)
++++|.++. ..+..+..+++|++|++++|.+++.++. .+..+++|+.|++++|.+++.++ ..++.+++|++|+++
T Consensus 91 ~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 91 ILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDG---VFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLS 165 (272)
T ss_dssp ECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECC
T ss_pred ECCCCccCc-cChhHhcCCcCCCEEECCCCcCCccCHH---HhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECC
Confidence 999999884 3344457899999999999999987654 57889999999999999998775 567889999999999
Q ss_pred CCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016371 291 KNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 291 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
+|.++++. +.. +..+++|++|++++|++++.+ ...+..+++|++|++++|++....
T Consensus 166 ~n~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 166 YNQLQSLP-EGV----------------FDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp SSCCCCCC-TTT----------------TTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCCcCccC-HHH----------------hcCCccCCEEECCCCcCCccC-HHHHhCCcCCCEEEccCCCccccC
Confidence 99999873 222 577899999999999999875 356789999999999999997543
No 67
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=3.7e-22 Score=198.68 Aligned_cols=88 Identities=22% Similarity=0.206 Sum_probs=73.8
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCcc--CCCCC
Q 016371 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEV--TGLPQ 203 (390)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~ 203 (390)
..+..+++|++|++++|.++...+.....+++|++|+|++|.++. +|.. .+++|++|++++|+++... ..+..
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~ 144 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN---ISCC--PMASLRHLDLSFNDFDVLPVCKEFGN 144 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE---ECSC--CCTTCSEEECCSSCCSBCCCCGGGGG
T ss_pred hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc---cCcc--ccccCCEEECCCCCccccCchHhhcc
Confidence 578899999999999999998876434445999999999999984 4444 7999999999999998754 36889
Q ss_pred CCCccEEEeecccCC
Q 016371 204 LKSIRILVLNCTGVN 218 (390)
Q Consensus 204 l~~L~~L~L~~~~l~ 218 (390)
+++|++|++++|.++
T Consensus 145 l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 145 LTKLTFLGLSAAKFR 159 (562)
T ss_dssp CTTCCEEEEECSBCC
T ss_pred cCcccEEecCCCccc
Confidence 999999999999875
No 68
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.87 E-value=2.8e-22 Score=147.07 Aligned_cols=73 Identities=32% Similarity=0.614 Sum_probs=66.5
Q ss_pred CCCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016371 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~~ 81 (390)
+..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|+++.++...
T Consensus 23 ~~~~~VG~RV~V~g~--~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~GiFvr~~~v~~~ 95 (102)
T 1whh_A 23 GAKAEVGDQVLVAGQ--KQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCA-PRHGVFAPASRIQRI 95 (102)
T ss_dssp CCSSCTTSEEEETTT--EEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECSCCC-TTTEEEECGGGEEEC
T ss_pred cccCcCCCEEEECCC--cEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEECCEEeeecC-CCcEEEecHHHeEEC
Confidence 467999999999764 4699999999999999999999999999999999999999997 599999999988643
No 69
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=6.1e-21 Score=185.49 Aligned_cols=211 Identities=27% Similarity=0.312 Sum_probs=111.6
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016371 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+.++++|+.|++++|.+.... .+. .+++|++|++++|.+.+.. + +..+++|++|++++|.+... +.+..+++|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~-~l~-~l~~L~~L~l~~n~l~~~~--~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L 245 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDIS-VLA-KLTNLESLIATNNQISDIT--P--LGILTNLDELSLNGNQLKDI-GTLASLTNL 245 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGG-GCTTCSEEECCSSCCCCCG--G--GGGCTTCCEEECCSSCCCCC-GGGGGCTTC
T ss_pred hccCCCCCEEECcCCcCCCCh-hhc-cCCCCCEEEecCCcccccc--c--ccccCCCCEEECCCCCcccc-hhhhcCCCC
Confidence 344455555555555544432 122 2355555555555554421 1 34455555555555554432 234445555
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeE
Q 016371 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (390)
Q Consensus 208 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 287 (390)
++|++++|.++.. +. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++.++ +..+++|+.|
T Consensus 246 ~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L 314 (466)
T 1o6v_A 246 TDLDLANNQISNL--AP-LSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISP---ISNLKNLTYL 314 (466)
T ss_dssp SEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEE
T ss_pred CEEECCCCccccc--hh-hhcCCCCCEEECCCCccCcccc-----ccCCCccCeEEcCCCcccCchh---hcCCCCCCEE
Confidence 5555555554421 11 3445555555555555544321 3445555555555555555432 3445555555
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcc
Q 016371 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGG 367 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 367 (390)
+|++|.++++.. +..+++|++|++++|++++.+ .+..+++|+.|++++|++.+ .
T Consensus 315 ~L~~n~l~~~~~-------------------~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~----~ 368 (466)
T 1o6v_A 315 TLYFNNISDISP-------------------VSSLTKLQRLFFYNNKVSDVS---SLANLTNINWLSAGHNQISD----L 368 (466)
T ss_dssp ECCSSCCSCCGG-------------------GGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCB----C
T ss_pred ECcCCcCCCchh-------------------hccCccCCEeECCCCccCCch---hhccCCCCCEEeCCCCccCc----c
Confidence 555555554421 345677777777777777753 46677777777777777763 2
Q ss_pred hhhhhhhhhcCCceEecCc
Q 016371 368 ISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 368 ~~~~~~i~~l~~L~~Ln~s 386 (390)
.| ++++++|+.|+++
T Consensus 369 ~~----~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 369 TP----LANLTRITQLGLN 383 (466)
T ss_dssp GG----GTTCTTCCEEECC
T ss_pred ch----hhcCCCCCEEecc
Confidence 22 5667777777665
No 70
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.87 E-value=3.1e-22 Score=144.01 Aligned_cols=71 Identities=38% Similarity=0.709 Sum_probs=65.1
Q ss_pred CCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016371 8 SYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 8 ~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~~ 81 (390)
+++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|++++++..+
T Consensus 1 ~l~vG~rV~V~g~--~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~-p~~G~Fv~~~kv~~~ 71 (90)
T 2e3h_A 1 ELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQ-PKYGLFAPVHKVTKI 71 (90)
T ss_dssp CCCTTCEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESCCCC-TTCEEEEEGGGEEET
T ss_pred CCcCCCEEEECCC--CEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEECCEEeeecC-CCcEEEEcHHHeEEC
Confidence 4789999999774 4599999999999999999999999999999999999999997 589999999988654
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=5.3e-22 Score=179.48 Aligned_cols=218 Identities=19% Similarity=0.180 Sum_probs=171.6
Q ss_pred EeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeec
Q 016371 136 SAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNC 214 (390)
Q Consensus 136 ~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~ 214 (390)
.++..+..+..++..+ .++|++|++++|.+..+. +..+.++++|++|++++|.++...+ .+..+++|++|++++
T Consensus 11 ~~~c~~~~l~~ip~~l---~~~l~~L~ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCSSCCSSS---CTTCCEEECTTCCCCEEC--TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCccccCCCC---CCCccEEECCCCcccccC--HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence 4566666776666543 268999999999998632 3467899999999999999987766 588999999999999
Q ss_pred ccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCcc
Q 016371 215 TGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNL 294 (390)
Q Consensus 215 ~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l 294 (390)
|.++. ..+..+..+++|++|++++|.++..... .+..+++|++|++++|.++.......++.+++|++|+|++|.+
T Consensus 86 n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 86 NPIQS-LALGAFSGLSSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CCCCE-ECTTTTTTCTTCCEEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CccCc-cChhhhcCCccccEEECCCCCccccCch---hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 99875 2334457899999999999999987654 5788999999999999998743115688899999999999999
Q ss_pred ccccCCCCCchhhhhhcccccccCCCCCCCCC----EEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhh
Q 016371 295 NRIYYPNNDTIHELVSAHESHEESYLPFQNLC----CLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISR 370 (390)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 370 (390)
+++. +.. +..+++|+ .|++++|++++++ .......+|++|++++|.++. ++.
T Consensus 162 ~~~~-~~~----------------~~~l~~L~~l~l~L~ls~n~l~~~~--~~~~~~~~L~~L~L~~n~l~~-----~~~ 217 (276)
T 2z62_A 162 QSIY-CTD----------------LRVLHQMPLLNLSLDLSLNPMNFIQ--PGAFKEIRLKELALDTNQLKS-----VPD 217 (276)
T ss_dssp CEEC-GGG----------------GHHHHTCTTCCEEEECCSSCCCEEC--TTSSCSCCEEEEECCSSCCSC-----CCT
T ss_pred CcCC-HHH----------------hhhhhhccccceeeecCCCcccccC--ccccCCCcccEEECCCCceee-----cCH
Confidence 9873 222 33334454 8999999999875 234445689999999999984 333
Q ss_pred hhhhhhcCCceEecCcc
Q 016371 371 FAIIARLGKIKILNGSE 387 (390)
Q Consensus 371 ~~~i~~l~~L~~Ln~s~ 387 (390)
. +++++++|+.|+++.
T Consensus 218 ~-~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 218 G-IFDRLTSLQKIWLHT 233 (276)
T ss_dssp T-TTTTCCSCCEEECCS
T ss_pred h-HhcccccccEEEccC
Confidence 2 368899999998873
No 72
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=193.14 Aligned_cols=246 Identities=17% Similarity=0.146 Sum_probs=160.6
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCC
Q 016371 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQL 204 (390)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l 204 (390)
|..+..+++|++|++++|.+..++.. .+++|++|++++|.++.. .+|..+..+++|++|++++|.+... .+..+
T Consensus 62 ~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l 135 (520)
T 2z7x_B 62 ISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDAL-PICKEFGNMSQLKFLGLSTTHLEKS--SVLPI 135 (520)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSC-CCCGGGGGCTTCCEEEEEESSCCGG--GGGGG
T ss_pred hHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCccccc-cchhhhccCCcceEEEecCcccchh--hcccc
Confidence 56788999999999999999976544 469999999999999863 3567789999999999999988632 11111
Q ss_pred C-------------------------------------------------------------------------------
Q 016371 205 K------------------------------------------------------------------------------- 205 (390)
Q Consensus 205 ~------------------------------------------------------------------------------- 205 (390)
+
T Consensus 136 ~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 215 (520)
T 2z7x_B 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK 215 (520)
T ss_dssp TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHG
T ss_pred ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhh
Confidence 2
Q ss_pred --------------------------------CccEEEeecccCCH-------------------------------HHH
Q 016371 206 --------------------------------SIRILVLNCTGVNW-------------------------------MQV 222 (390)
Q Consensus 206 --------------------------------~L~~L~L~~~~l~~-------------------------------~~~ 222 (390)
+|++|++++|.+++ ..+
T Consensus 216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~ 295 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295 (520)
T ss_dssp GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh
Confidence 33344444333221 011
Q ss_pred HHHH---------------------hcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhh-hhcCC
Q 016371 223 EILK---------------------HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI-LKLCQ 280 (390)
Q Consensus 223 ~~~~---------------------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~ 280 (390)
...+ ..+++|++|++++|.+++..+. .+..+++|+.|++++|.+++.+.+ ..++.
T Consensus 296 ~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 372 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE---NCGHLTELETLILQMNQLKELSKIAEMTTQ 372 (520)
T ss_dssp HHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT---TCCCCSSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred hcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhh---hhccCCCCCEEEccCCccCccccchHHHhh
Confidence 1110 3455666666666666654332 456677777777777777764432 34667
Q ss_pred CCCcCeEecCCCcccc-ccCC--CCCchhhhhhcccccccCC--CCC-CCCCEEeCCCCCCCCchhhhhccCCCCCcEEE
Q 016371 281 IRSLEQLYLNKNNLNR-IYYP--NNDTIHELVSAHESHEESY--LPF-QNLCCLLLGNNMIEDLASIDSLDSFPKLMDIR 354 (390)
Q Consensus 281 l~~L~~L~L~~n~l~~-~~~~--~~~~~~~~~~~~~~~~~~~--~~~-~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 354 (390)
+++|++|++++|.+++ +... .....++.+..+.+...+. ..+ ++|++|++++|+|+.++ ..+..+++|++|+
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIP--KQVVKLEALQELN 450 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCC--GGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccc--hhhhcCCCCCEEE
Confidence 7778888888877776 4211 1123444455555544221 122 68888888888888765 4455788888889
Q ss_pred ccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 355 LSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 355 l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+++|+++. +|.. .++.+++|+.|+++.
T Consensus 451 L~~N~l~~-----l~~~-~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 451 VASNQLKS-----VPDG-IFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCSSCCCC-----CCTT-TTTTCTTCCEEECCS
T ss_pred CCCCcCCc-----cCHH-HhccCCcccEEECcC
Confidence 88888874 3332 367788888888764
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.8e-21 Score=175.45 Aligned_cols=198 Identities=22% Similarity=0.267 Sum_probs=163.9
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccE
Q 016371 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEE 234 (390)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~ 234 (390)
.+++.++++++.++. +|..+ .++|+.|++++|.++...+ .+..+++|++|++++|.++. ..+..+..+++|++
T Consensus 16 ~~~~~l~~~~~~l~~---ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA---IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLET 89 (270)
T ss_dssp TTTTEEECTTSCCSS---CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCE
T ss_pred CCCCEEEccCCCCCc---cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCE
Confidence 468899999999985 44322 2579999999999988776 68899999999999999873 23344577899999
Q ss_pred EeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccc
Q 016371 235 LHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHES 314 (390)
Q Consensus 235 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~ 314 (390)
|++++|.++..++. .+..+++|+.|++++|.++..++ ..+..+++|++|+|++|.++.+ +...
T Consensus 90 L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~--~~~~----------- 152 (270)
T 2o6q_A 90 LWVTDNKLQALPIG---VFDQLVNLAELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSL--PKGV----------- 152 (270)
T ss_dssp EECCSSCCCCCCTT---TTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC--CTTT-----------
T ss_pred EECCCCcCCcCCHh---HcccccCCCEEECCCCccCeeCH-HHhCcCcCCCEEECCCCcCCcc--CHhH-----------
Confidence 99999999987654 57889999999999999998775 5678999999999999999987 3321
Q ss_pred cccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 315 HEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 315 ~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+..+++|++|+|++|+|++++ ...+..+++|++|++++|++.. ++.. .++.+++|+.|+++.
T Consensus 153 ----~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-----~~~~-~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 153 ----FDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQLKR-----VPEG-AFDSLEKLKMLQLQE 214 (270)
T ss_dssp ----TTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCCSC-----CCTT-TTTTCTTCCEEECCS
T ss_pred ----ccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCCcCCc-----CCHH-HhccccCCCEEEecC
Confidence 577899999999999999875 3568889999999999999984 3322 367899999998864
No 74
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.87 E-value=3.8e-22 Score=144.86 Aligned_cols=70 Identities=40% Similarity=0.742 Sum_probs=64.8
Q ss_pred CCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCC
Q 016371 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~ 79 (390)
.+++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|. +++|.|++++++.
T Consensus 15 ~~~~vG~RV~V~g~--~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~G~rYF~C~-~~~G~Fv~~~kv~ 84 (95)
T 2cp0_A 15 LGLRLGDRVLLDGQ--KTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICP-PKQGLFASVSKIS 84 (95)
T ss_dssp HTCCTTCEEEETTT--EEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECCCCS-SSCEEEECGGGEE
T ss_pred cCCCCCCEEEECCC--CeEEEEEecccCCCCCcEEEEEecCCCCcCCCEECCEEeeecC-CCcEEEEcHHHee
Confidence 56999999999764 4699999999999999999999999999999999999999998 5999999999874
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=1e-21 Score=199.86 Aligned_cols=250 Identities=21% Similarity=0.217 Sum_probs=141.3
Q ss_pred HHHhccccccEeecCCcccCCC--Cc-chhhh-cCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC--
Q 016371 126 DKFSKFEELTSAALPYLGVSSP--GA-NIGTI-VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-- 199 (390)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~--~~-~~~~~-~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-- 199 (390)
..+..+++|++|++++|.+... +. .+... .++|+.|++++|.+.. ..|..+..+++|+.|++++|.+.+..+
T Consensus 347 ~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK--IESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCe--EChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 3466778888888887764322 11 11111 1467777777777765 234556677777777777777654332
Q ss_pred CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcC
Q 016371 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLC 279 (390)
Q Consensus 200 ~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 279 (390)
.+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++.... .+..+..+++|+.|+|++|.++..++ ..+.
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~-~p~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~ 501 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDS-SPSPFQPLRNLTILDLSNNNIANIND-DMLE 501 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEE-CCTTTTTTCTTCCEEECTTSCCBCTTC-SSCTTTTCTTCCEEECCSSCCCCCCT-TTTT
T ss_pred cccCcccccEEecCCCCcce-eChhhhhcCcccccchhcccccccccc-CCcccccCCCCCEEECCCCCCCcCCh-hhhc
Confidence 45666777777777776542 112223455666666666666543211 12245556666666666666665543 3455
Q ss_pred CCCCcCeEecCCCccccccC---C-------CCCchhhhhhccccccc-----CCCCCCCCCEEeCCCCCCCCchhhhhc
Q 016371 280 QIRSLEQLYLNKNNLNRIYY---P-------NNDTIHELVSAHESHEE-----SYLPFQNLCCLLLGNNMIEDLASIDSL 344 (390)
Q Consensus 280 ~l~~L~~L~L~~n~l~~~~~---~-------~~~~~~~~~~~~~~~~~-----~~~~~~~L~~L~L~~N~i~~~~~~~~l 344 (390)
.+++|++|+|++|.++.+.. | .....++.+.++.|... .+..+++|++|+|++|+|+.++ ...+
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~ 580 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP-ASVF 580 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC-HhHh
Confidence 56666666666666655421 0 01112222333333221 1456677777777777777664 2455
Q ss_pred cCCCCCcEEEccCCCCCCCCCcchhhhhhhh-hcCCceEecCcc
Q 016371 345 DSFPKLMDIRLSENPVSDPGRGGISRFAIIA-RLGKIKILNGSE 387 (390)
Q Consensus 345 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~-~l~~L~~Ln~s~ 387 (390)
..+++|++|++++|.++. ..+.. ++ .+++|+.|+++.
T Consensus 581 ~~l~~L~~L~L~~N~l~~----~~~~~--~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITS----VEKKV--FGPAFRNLTELDMRF 618 (680)
T ss_dssp TTCTTCCEEECTTSCCCB----CCHHH--HHHHHTTCSEEECTT
T ss_pred CCCCCCCEEECCCCcCCc----cChhH--hcccccccCEEEccC
Confidence 677777777777777763 12222 33 567777777653
No 76
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.86 E-value=3.3e-22 Score=146.72 Aligned_cols=71 Identities=35% Similarity=0.681 Sum_probs=65.2
Q ss_pred CCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCC
Q 016371 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSP 80 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~ 80 (390)
..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|++++++..
T Consensus 23 ~~~~vG~RV~V~g~--~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~G~Fv~~~kv~~ 93 (102)
T 1whj_A 23 LGLKLGDRVVIAGQ--KVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCA-PKYGIFAPLSKISK 93 (102)
T ss_dssp HTCCTTCEEEETTT--EEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECCCCC-TTTEEEEEGGGEEE
T ss_pred hcCcCCCEEEECCC--CEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEECCEEecccC-CCeEEEEeHHHccc
Confidence 56999999999764 4699999999999999999999999999999999999999997 58999999998753
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.8e-21 Score=177.62 Aligned_cols=202 Identities=24% Similarity=0.325 Sum_probs=167.7
Q ss_pred ecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccC
Q 016371 138 ALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGV 217 (390)
Q Consensus 138 ~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l 217 (390)
.+..+.+.... .... +++|+.|++++|.+..+ + .+..+++|++|++++|.+....+ +..+++|++|++++|.+
T Consensus 25 ~l~~~~~~~~~-~~~~-l~~L~~L~l~~~~i~~l---~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 25 AAGKSNVTDTV-TQAD-LDGITTLSAFGTGVTTI---E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HTTCSSTTSEE-CHHH-HHTCCEEECTTSCCCCC---T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred HhCCCCcCcee-cHHH-cCCcCEEEeeCCCccCc---h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC
Confidence 44444544432 3334 49999999999999864 3 47889999999999999988766 88999999999999998
Q ss_pred CHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccc
Q 016371 218 NWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 218 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 297 (390)
+. ++ .+..+++|++|++++|.+++.. .+..+++|+.|++++|.+++.+. +..+++|+.|+|++|.++++
T Consensus 98 ~~--~~-~~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 98 KN--VS-AIAGLQSIKTLDLTSTQITDVT-----PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp SC--CG-GGTTCTTCCEEECTTSCCCCCG-----GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC
T ss_pred CC--ch-hhcCCCCCCEEECCCCCCCCch-----hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCC
Confidence 84 33 3578999999999999998764 37889999999999999998764 77889999999999999986
Q ss_pred cCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhc
Q 016371 298 YYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARL 377 (390)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l 377 (390)
. . +..+++|+.|++++|++++++. +..+++|++|++++|++.+ ++. ++.+
T Consensus 167 ~--~-----------------l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~-----~~~---l~~l 216 (308)
T 1h6u_A 167 T--P-----------------LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISD-----VSP---LANT 216 (308)
T ss_dssp G--G-----------------GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCB-----CGG---GTTC
T ss_pred h--h-----------------hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCc-----ccc---ccCC
Confidence 3 2 4678999999999999998763 7889999999999999984 332 6889
Q ss_pred CCceEecCcc
Q 016371 378 GKIKILNGSE 387 (390)
Q Consensus 378 ~~L~~Ln~s~ 387 (390)
++|+.|+++.
T Consensus 217 ~~L~~L~l~~ 226 (308)
T 1h6u_A 217 SNLFIVTLTN 226 (308)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCEEEccC
Confidence 9999998764
No 78
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.86 E-value=5.4e-22 Score=144.09 Aligned_cols=73 Identities=34% Similarity=0.657 Sum_probs=65.4
Q ss_pred CCCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCC
Q 016371 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSP 80 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~ 80 (390)
+..++||+||.+.+.. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|+++.++..
T Consensus 10 ~~~~~vG~rv~v~~~~-~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~-~~~G~Fvr~~~v~~ 82 (93)
T 1txq_A 10 ARPLRVGSRVEVIGKG-HRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCD-EGHGIFVRQSQIQV 82 (93)
T ss_dssp -CCCCTTCEEEETTTC-CEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCC-TTCEEEECGGGEEE
T ss_pred cccCCCCCEEEECCCC-eEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEeeecC-CCeEEEEcHHHeEE
Confidence 4679999999997542 4599999999999999999999999999999999999999997 49999999998754
No 79
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.86 E-value=5e-22 Score=146.75 Aligned_cols=77 Identities=22% Similarity=0.491 Sum_probs=67.5
Q ss_pred CCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEe-cCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCCCCc
Q 016371 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDW-DYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGISL 84 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~-d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~~~~~ 84 (390)
..++||+||.+.++..+.|||||+|++++++|.|+|||| |++.|||||+++|++||+|. +++|.|+++.++.....|
T Consensus 16 ~~l~VG~RV~V~~~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF~C~-p~~G~FVr~~~v~~~~rf 93 (104)
T 1ixd_A 16 HGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCA-LKKALFVKLKSCRPDSRF 93 (104)
T ss_dssp SCCCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCC-TTCBEEEEGGGEEECCTT
T ss_pred cccccCCEEEECcCCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEeeecC-CCcEEEEcHHHceecccc
Confidence 679999999997542356999999999999999999999 56669999999999999997 599999999998766544
No 80
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.86 E-value=7.4e-22 Score=149.28 Aligned_cols=72 Identities=31% Similarity=0.618 Sum_probs=66.4
Q ss_pred CCCCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCC
Q 016371 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (390)
Q Consensus 5 ~~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~ 79 (390)
.|..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|+|||.|.+ ++|.|+++.++.
T Consensus 28 ~~~~l~VG~RV~V~g~--~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p-~~GiFVr~~kv~ 99 (122)
T 2coz_A 28 ELFDFHIGDRVLIGNV--QPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKE-KHGIFAPPQKIS 99 (122)
T ss_dssp SCSSCCTTEEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECCCCCS-SCEEEECGGGEE
T ss_pred ccccCcCCCEEEECCC--cEEEEEEecccCCCCCeEEEEEeCCCCCccCCEECCEEeeecCC-CcEEEecHHHCc
Confidence 3568999999999774 56999999999999999999999999999999999999999985 899999999885
No 81
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=7.4e-21 Score=189.25 Aligned_cols=245 Identities=16% Similarity=0.157 Sum_probs=162.6
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCC
Q 016371 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQL 204 (390)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l 204 (390)
|..+..+++|++|++++|.+...+.. .+++|++|++++|.+..+ .+|..+.++++|++|++++|.+... .+..+
T Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l-~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l 166 (562)
T 3a79_B 93 FHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVL-PVCKEFGNLTKLTFLGLSAAKFRQL--DLLPV 166 (562)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBC-CCCGGGGGCTTCCEEEEECSBCCTT--TTGGG
T ss_pred HHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCcccc-CchHhhcccCcccEEecCCCccccC--chhhh
Confidence 45678999999999999999977655 469999999999999863 2346789999999999999988642 22222
Q ss_pred CCc--cEEEeecccC-----------------------------------------------------------------
Q 016371 205 KSI--RILVLNCTGV----------------------------------------------------------------- 217 (390)
Q Consensus 205 ~~L--~~L~L~~~~l----------------------------------------------------------------- 217 (390)
++| ++|++++|.+
T Consensus 167 ~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~ 246 (562)
T 3a79_B 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246 (562)
T ss_dssp TTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHH
T ss_pred hhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHh
Confidence 222 4444444333
Q ss_pred ------------------------------------------CH-------------------------------HHHHH
Q 016371 218 ------------------------------------------NW-------------------------------MQVEI 224 (390)
Q Consensus 218 ------------------------------------------~~-------------------------------~~~~~ 224 (390)
++ ..+..
T Consensus 247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~ 326 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326 (562)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHH
T ss_pred ccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhh
Confidence 21 00111
Q ss_pred HH---------------------hcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhh-hhcCCCC
Q 016371 225 LK---------------------HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI-LKLCQIR 282 (390)
Q Consensus 225 ~~---------------------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~ 282 (390)
.+ ..+++|++|++++|.+++..+. .+..+++|+.|+|++|.+++.+.+ ..+..++
T Consensus 327 ~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 403 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ---GCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403 (562)
T ss_dssp HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT---TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT
T ss_pred hhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhh---hhcccCCCCEEECCCCCcCCcccchhhhcCCC
Confidence 10 3455667777777776664332 566777778888888877765432 3466778
Q ss_pred CcCeEecCCCcccc-ccCCC---CCchhhhhhcccccccC--CCCC-CCCCEEeCCCCCCCCchhhhhccCCCCCcEEEc
Q 016371 283 SLEQLYLNKNNLNR-IYYPN---NDTIHELVSAHESHEES--YLPF-QNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRL 355 (390)
Q Consensus 283 ~L~~L~L~~n~l~~-~~~~~---~~~~~~~~~~~~~~~~~--~~~~-~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 355 (390)
+|++|++++|.+++ +. +. ....++.+.++.+...+ +..+ ++|++|+|++|+|+.++ ..+..+++|++|++
T Consensus 404 ~L~~L~l~~N~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip--~~~~~l~~L~~L~L 480 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAY-DRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIP--KDVTHLQALQELNV 480 (562)
T ss_dssp TCCEEECTTSCCBSCCS-SCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCC--TTTTSSCCCSEEEC
T ss_pred CCCEEECCCCcCCCccC-hhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccC--hhhcCCCCCCEEEC
Confidence 88888888888776 31 11 12334445555554432 2223 58888888888888765 44557888999999
Q ss_pred cCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 356 SENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 356 ~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
++|.++. +|.. .++.+++|+.|+++.
T Consensus 481 ~~N~l~~-----l~~~-~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 481 ASNQLKS-----VPDG-VFDRLTSLQYIWLHD 506 (562)
T ss_dssp CSSCCCC-----CCTT-STTTCTTCCCEECCS
T ss_pred CCCCCCC-----CCHH-HHhcCCCCCEEEecC
Confidence 9998874 3332 367788888888764
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.7e-21 Score=177.49 Aligned_cols=194 Identities=22% Similarity=0.234 Sum_probs=162.6
Q ss_pred cCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCccc
Q 016371 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALE 233 (390)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~ 233 (390)
++++++++++++.++. +|..+ .++++.|++++|.++...+ .+..+++|++|++++|.++. ++.. ..+++|+
T Consensus 9 l~~l~~l~~~~~~l~~---ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~ 80 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA---LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLG 80 (290)
T ss_dssp STTCCEEECTTSCCSS---CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EECC-SCCTTCC
T ss_pred cCCccEEECCCCCCCc---CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc--ccCC-CCCCcCC
Confidence 4899999999999985 44332 3689999999999988765 68899999999999999874 2222 6889999
Q ss_pred EEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhccc
Q 016371 234 ELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHE 313 (390)
Q Consensus 234 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 313 (390)
+|++++|.++.++. .+..+++|+.|+|++|.++..++ ..+..+++|++|+|++|.|+.+ |...
T Consensus 81 ~L~Ls~N~l~~l~~----~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~--~~~~---------- 143 (290)
T 1p9a_G 81 TLDLSHNQLQSLPL----LGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTL--PPGL---------- 143 (290)
T ss_dssp EEECCSSCCSSCCC----CTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCC--CTTT----------
T ss_pred EEECCCCcCCcCch----hhccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCcc--Chhh----------
Confidence 99999999987653 47789999999999999998775 5688999999999999999987 3321
Q ss_pred ccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016371 314 SHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 314 ~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
+..+++|+.|+|++|+|+.++. ..+..+++|++|++++|.|.. +|.. +..+++|+.|+++
T Consensus 144 -----~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~-----ip~~--~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 144 -----LTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYT-----IPKG--FFGSHLLPFAFLH 203 (290)
T ss_dssp -----TTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCC-----CCTT--TTTTCCCSEEECC
T ss_pred -----cccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCc-----cChh--hcccccCCeEEeC
Confidence 6778999999999999998753 567889999999999999984 5665 6677888888775
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=2.9e-21 Score=192.87 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=70.1
Q ss_pred CCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCC-CCCCCCCEEeCCCCCC
Q 016371 257 DNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESY-LPFQNLCCLLLGNNMI 335 (390)
Q Consensus 257 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~N~i 335 (390)
++|+.|++++|.+++.+. .+++|+.|++++|.++.+ |.....++.+.++.|...++ ..+++|+.|+|++|+|
T Consensus 181 ~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l--~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L 253 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSL--PALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRL 253 (622)
T ss_dssp TTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSC--CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred CCCcEEECCCCCCCCCCC-----ccchhhEEECcCCccccc--CCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCC
Confidence 667777777777766442 235666666666666654 44444455555555544443 2356777777777777
Q ss_pred CCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 336 EDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 336 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+.++. .+++|+.|+|++|.|+. +|.. +..+++|+.|+++.
T Consensus 254 ~~lp~-----~~~~L~~L~Ls~N~L~~-----lp~~--l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 254 TSLPM-----LPSGLLSLSVYRNQLTR-----LPES--LIHLSSETTVNLEG 293 (622)
T ss_dssp SCCCC-----CCTTCCEEECCSSCCCS-----CCGG--GGGSCTTCEEECCS
T ss_pred CcCCc-----ccccCcEEeCCCCCCCc-----CCHH--HhhccccCEEEecC
Confidence 76552 46677777777777763 5554 67777777777653
No 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=2.1e-22 Score=209.59 Aligned_cols=92 Identities=21% Similarity=0.127 Sum_probs=60.1
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHH--HhcCCCCCEEEccCCCCCCccC--C
Q 016371 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAF--GEQLPALAVLNLSNNLMSKEVT--G 200 (390)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~--~~~l~~L~~L~ls~n~l~~~~~--~ 200 (390)
+..+.++++|++|+|++|.+....+.....+++|++|+|++|.+.+ .++.. +.++++|++|++++|.+.+..+ .
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~ 143 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD--AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS--CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc--ccccCccccccCCCCEEECCCCcccccccchh
Confidence 4456677777777777777776655333334777777777777764 22332 5667777777777777765543 3
Q ss_pred CCCCCCccEEEeecccCC
Q 016371 201 LPQLKSIRILVLNCTGVN 218 (390)
Q Consensus 201 ~~~l~~L~~L~L~~~~l~ 218 (390)
+..+++|++|++++|.++
T Consensus 144 ~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 144 FGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp GGTCSSCCEEEEESSCCC
T ss_pred HhhCCCCCEEECCCCcCC
Confidence 667777777777777664
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.5e-22 Score=190.43 Aligned_cols=226 Identities=21% Similarity=0.187 Sum_probs=112.0
Q ss_pred HHHHHHhccccccEeecCCcccCCCCc----chhhhcC-cccEEECCCCcCCC--hHHHHHHHhcC-CCCCEEEccCCCC
Q 016371 123 KIQDKFSKFEELTSAALPYLGVSSPGA----NIGTIVT-NLKELDLTGNLLSD--WKDIGAFGEQL-PALAVLNLSNNLM 194 (390)
Q Consensus 123 ~l~~~~~~l~~L~~L~L~~~~i~~~~~----~~~~~~~-~L~~L~Ls~n~l~~--~~~i~~~~~~l-~~L~~L~ls~n~l 194 (390)
.+|..+...++|++|++++|.++..+. .....++ +|++|+|++|.+.+ +..+...+... ++|++|++++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 344455555556666666666666554 2222234 66666666666654 22233333333 6666666666666
Q ss_pred CCccCC-----CCCC-CCccEEEeecccCCHHHHHHH---Hhc-CCcccEEeccCCCccccCCC-CCCccCCCC-CccEE
Q 016371 195 SKEVTG-----LPQL-KSIRILVLNCTGVNWMQVEIL---KHS-LPALEELHLMGNSISEITPV-SSPIVQGFD-NLQLL 262 (390)
Q Consensus 195 ~~~~~~-----~~~l-~~L~~L~L~~~~l~~~~~~~~---~~~-l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~-~L~~L 262 (390)
+...+. +..+ ++|++|++++|.++......+ +.. .++|++|++++|.+++.... ++..+..++ +|++|
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 544331 2233 566666666666553322222 222 24666666666666543211 001122333 66666
Q ss_pred EcCCCCCCCchhh---hhcCCC-CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCC-CCCCCEEeCCCCCCCC
Q 016371 263 NLEDNCIAEWSEI---LKLCQI-RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLP-FQNLCCLLLGNNMIED 337 (390)
Q Consensus 263 ~L~~n~l~~~~~~---~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~N~i~~ 337 (390)
+|++|.+++.... ..+..+ ++|++|+|++|.|++......... +.. .++|++|+|++|+|++
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~-------------l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI-------------FSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-------------HHHSCTTCCEEECCSSCCCC
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH-------------HhcCCCCceEEECcCCCCCc
Confidence 6666666544321 123334 366666666666665311000000 111 2466666666666665
Q ss_pred chh---hhhccCCCCCcEEEccCCCCC
Q 016371 338 LAS---IDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 338 ~~~---~~~l~~l~~L~~L~l~~n~l~ 361 (390)
.+. ...+..+++|++|++++|.+.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 422 122345566666666666633
No 86
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.86 E-value=4.3e-22 Score=149.42 Aligned_cols=74 Identities=39% Similarity=0.708 Sum_probs=66.2
Q ss_pred CCCCCCCEEEeC--CCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016371 7 ESYKLGQRVHSA--NDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 7 ~~~~~g~~v~~~--~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~~ 81 (390)
..++||+||.+. ++..+.|||||+|++++.+|.|+|||||+|.|||||+++|++||.|.+ ++|.|+++.++..+
T Consensus 31 ~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p-~~GiFvr~~~v~~g 106 (113)
T 1whg_A 31 SAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQA-KYGAFVKPSAVTVG 106 (113)
T ss_dssp TTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECSCCCT-TTEEEECGGGEEEE
T ss_pred hcCCCCCEEEEecCCCcceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEEeeeCC-CeEEEECHHHeEEC
Confidence 579999999995 322366999999999999999999999999999999999999999974 99999999988654
No 87
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.85 E-value=7.8e-22 Score=142.24 Aligned_cols=73 Identities=32% Similarity=0.574 Sum_probs=65.8
Q ss_pred CCCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCC
Q 016371 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSP 80 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~ 80 (390)
...++||+||.+.+.. +.|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|. +++|.|+++.++..
T Consensus 10 ~~~~~vG~rV~V~~~~-~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-~~~G~Fvr~~~v~~ 82 (91)
T 1whk_A 10 TVKLHEGSQVLLTSSN-EMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCK-PNYGVLVRPSRVTY 82 (91)
T ss_dssp CCCCCSSCEEEESSSC-CEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECCCCS-TTCCCEECGGGEEC
T ss_pred CccccCCCEEEECCCC-eEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEEeecC-CCeEEEEchHHcEE
Confidence 3679999999997532 5599999999999999999999999999999999999999997 59999999998743
No 88
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.85 E-value=9.6e-22 Score=151.77 Aligned_cols=73 Identities=36% Similarity=0.689 Sum_probs=66.9
Q ss_pred CCCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016371 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~~ 81 (390)
|..++||+||.+.+. +.|||||+|++++.+|.|+|||||++.|||||+++|+|||+|. +++|.|+++.++...
T Consensus 62 ~~~l~VG~RV~V~G~--~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~-p~~GiFVrp~kv~~~ 134 (141)
T 2cp5_A 62 VDDFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE-PLKGIFTRPSKLTRK 134 (141)
T ss_dssp CCCCCTTCEEEETTS--CEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEETTEESSCCC-TTTEEEECGGGEESS
T ss_pred hhcCcCCCEEEECCC--cEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEECCEEeeecC-CCcEEEechHHeeec
Confidence 567999999999875 4599999999999999999999999999999999999999997 589999999988654
No 89
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=2.7e-21 Score=194.67 Aligned_cols=115 Identities=21% Similarity=0.197 Sum_probs=69.9
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCC
Q 016371 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLK 205 (390)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~ 205 (390)
.+.++++|++|+|++|.|..+++..+..+++|++|+|++|.++.+. +..+.++++|++|++++|+++..++ .+..++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~--~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC--GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC--HHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 4566677777777777766665533333467777777777666421 2345666777777777776666554 356666
Q ss_pred CccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCcc
Q 016371 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSIS 243 (390)
Q Consensus 206 ~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 243 (390)
+|++|++++|.++....+..+..+++|++|++++|.++
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 67777776666653333444455666666666666543
No 90
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.85 E-value=1.3e-21 Score=143.03 Aligned_cols=72 Identities=38% Similarity=0.678 Sum_probs=65.3
Q ss_pred CCCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCC
Q 016371 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSP 80 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~ 80 (390)
+..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|+++.++..
T Consensus 21 ~~~l~vG~rV~V~g~--~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~GiFvr~~~v~~ 92 (100)
T 2cow_A 21 PEWLREGEFVTVGAH--KTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCN-PGYGLLVRPSRVRR 92 (100)
T ss_dssp CSSCCTTCEEECSSS--CEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECCCSC-TTCCEEECGGGCEE
T ss_pred CccccCCCEEEECCC--cEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecC-CCeEEEecHHHeeE
Confidence 356899999999764 4599999999999999999999999999999999999999996 59999999998753
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=1.2e-21 Score=178.56 Aligned_cols=211 Identities=22% Similarity=0.242 Sum_probs=156.3
Q ss_pred EeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecc
Q 016371 136 SAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCT 215 (390)
Q Consensus 136 ~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~ 215 (390)
.+.+....+.... .... +++|+.|++++|.+..+. .+..+++|++|++++|+++...+ +..+++|++|++++|
T Consensus 28 ~~~l~~~~~~~~~-~~~~-l~~L~~L~l~~~~i~~~~----~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 28 KDNLKKKSVTDAV-TQNE-LNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHTTCSCTTSEE-CHHH-HHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred HHHhcCCCccccc-chhh-cCcccEEEccCCCcccCh----hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence 3345555554432 2333 488889999988888642 36788899999999988887665 778888999999998
Q ss_pred cCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccc
Q 016371 216 GVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLN 295 (390)
Q Consensus 216 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 295 (390)
.++. ++. +..+++|++|++++|.+++.. .+..+++|+.|++++|.+++.. .+..+++|++|++++|.++
T Consensus 101 ~l~~--~~~-l~~l~~L~~L~L~~n~i~~~~-----~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 101 KVKD--LSS-LKDLKKLKSLSLEHNGISDIN-----GLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CCCC--GGG-GTTCTTCCEEECTTSCCCCCG-----GGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCC
T ss_pred cCCC--Chh-hccCCCCCEEECCCCcCCCCh-----hhcCCCCCCEEEccCCcCCcch---hhccCCCCCEEEccCCccc
Confidence 8874 333 478889999999999888752 4677889999999999988863 4677889999999999988
Q ss_pred cccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhh
Q 016371 296 RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIA 375 (390)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~ 375 (390)
++. . +..+++|++|++++|+|++++ .+..+++|+.|++++|++......... .+.
T Consensus 170 ~~~--~-----------------l~~l~~L~~L~L~~N~i~~l~---~l~~l~~L~~L~l~~n~i~~~~~~~~~---~l~ 224 (291)
T 1h6t_A 170 DIV--P-----------------LAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPINHQS---NLV 224 (291)
T ss_dssp CCG--G-----------------GTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEEEEEEEEECCCEECCS---EEE
T ss_pred cch--h-----------------hcCCCccCEEECCCCcCCCCh---hhccCCCCCEEECcCCcccCCcccccc---ccE
Confidence 863 2 356789999999999998864 478889999999999988763311111 134
Q ss_pred hcCCceEecCcccC
Q 016371 376 RLGKIKILNGSEVN 389 (390)
Q Consensus 376 ~l~~L~~Ln~s~i~ 389 (390)
.++.++.+++..|+
T Consensus 225 ~~~~l~~l~~~~i~ 238 (291)
T 1h6t_A 225 VPNTVKNTDGSLVT 238 (291)
T ss_dssp EECCCBCTTSCBCC
T ss_pred EcceEECCCCCCcC
Confidence 45566666666553
No 92
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=1.6e-20 Score=186.15 Aligned_cols=224 Identities=20% Similarity=0.249 Sum_probs=142.9
Q ss_pred hHHHHHHhccccccEeecCCcccCCCCc-----------------------------------chhhhcCcccEEECCCC
Q 016371 122 DKIQDKFSKFEELTSAALPYLGVSSPGA-----------------------------------NIGTIVTNLKELDLTGN 166 (390)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~~i~~~~~-----------------------------------~~~~~~~~L~~L~Ls~n 166 (390)
..++..+..+++|+.+++++|.+.+... .+...+++|+.|++++|
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 4455555677788888888776654321 11233467788888888
Q ss_pred cCCChHHHHHHH-hcCCCCCEEEccCCCCCCccC----CCCCCCCccEEEeecccCCHHHH-HHHHhcCCcccEEeccCC
Q 016371 167 LLSDWKDIGAFG-EQLPALAVLNLSNNLMSKEVT----GLPQLKSIRILVLNCTGVNWMQV-EILKHSLPALEELHLMGN 240 (390)
Q Consensus 167 ~l~~~~~i~~~~-~~l~~L~~L~ls~n~l~~~~~----~~~~l~~L~~L~L~~~~l~~~~~-~~~~~~l~~L~~L~L~~n 240 (390)
.+.. +|..+ ..+++|++|++++|++.+..+ .+..+++|++|++++|.++.... ...+..+++|++|++++|
T Consensus 321 ~l~~---ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 321 KVFL---VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp CCCC---CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred cccc---CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 7764 44444 578888888888888876532 35678888888888888874321 244678888888888888
Q ss_pred CccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCC
Q 016371 241 SISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYL 320 (390)
Q Consensus 241 ~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (390)
.++.++. .+..+++|+.|++++|.++..+. .+ .++|++|+|++|.+++. +.
T Consensus 398 ~l~~lp~----~~~~~~~L~~L~Ls~N~l~~l~~--~~--~~~L~~L~Ls~N~l~~~--~~------------------- 448 (549)
T 2z81_A 398 TFHPMPD----SCQWPEKMRFLNLSSTGIRVVKT--CI--PQTLEVLDVSNNNLDSF--SL------------------- 448 (549)
T ss_dssp CCCCCCS----CCCCCTTCCEEECTTSCCSCCCT--TS--CTTCSEEECCSSCCSCC--CC-------------------
T ss_pred CCccCCh----hhcccccccEEECCCCCcccccc--hh--cCCceEEECCCCChhhh--cc-------------------
Confidence 8886543 46677888888888888876543 11 25778888888877765 22
Q ss_pred CCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016371 321 PFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 321 ~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
.+++|++|+|++|+|+.++. ...+++|++|++++|.++. ..+.. ++.+++|+.|+++
T Consensus 449 ~l~~L~~L~Ls~N~l~~ip~---~~~l~~L~~L~Ls~N~l~~----~~~~~--~~~l~~L~~L~l~ 505 (549)
T 2z81_A 449 FLPRLQELYISRNKLKTLPD---ASLFPVLLVMKISRNQLKS----VPDGI--FDRLTSLQKIWLH 505 (549)
T ss_dssp CCTTCCEEECCSSCCSSCCC---GGGCTTCCEEECCSSCCCC----CCTTG--GGGCTTCCEEECC
T ss_pred cCChhcEEECCCCccCcCCC---cccCccCCEEecCCCccCC----cCHHH--HhcCcccCEEEec
Confidence 34555555555555554432 2345555555555555552 12222 4455555555554
No 93
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.85 E-value=1.7e-21 Score=145.48 Aligned_cols=72 Identities=35% Similarity=0.665 Sum_probs=65.3
Q ss_pred CCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCC
Q 016371 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSP 80 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~ 80 (390)
..++||+||.+.++. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|+++.++..
T Consensus 32 ~~l~VG~RV~V~~~g-~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~GiFVr~~~v~~ 103 (112)
T 2coy_A 32 RPLRVGSRVEVIGKG-HRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCD-EGHGIFVRQSQIQV 103 (112)
T ss_dssp CCCCTTCEEEETTTC-CEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCC-TTTEEEECGGGEEE
T ss_pred ccCCCCCEEEECCCC-eEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEeeecC-CCeEEEEchHHeEE
Confidence 579999999997542 4599999999999999999999999999999999999999997 59999999998753
No 94
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=3e-22 Score=199.43 Aligned_cols=242 Identities=16% Similarity=0.212 Sum_probs=104.2
Q ss_pred HHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCC
Q 016371 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQL 204 (390)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l 204 (390)
+..+..+++|+.++++++.+...+..+.. + +|+.|++++|.+.. +|. ..+++|+.|++++|.+....+. ..+
T Consensus 275 ~~~~~~l~~L~~L~l~~~~l~~l~~~~~~-~-~L~~L~l~~n~~~~---l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~ 346 (570)
T 2z63_A 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYN-F-GWQHLELVNCKFGQ---FPT--LKLKSLKRLTFTSNKGGNAFSE-VDL 346 (570)
T ss_dssp TTTTGGGTTCSEEEEESCEECSCCBCCSC-C-CCSEEEEESCBCSS---CCB--CBCSSCCEEEEESCBSCCBCCC-CBC
T ss_pred hhhhcCcCcccEEEecCccchhhhhhhcc-C-CccEEeeccCcccc---cCc--ccccccCEEeCcCCcccccccc-ccC
Confidence 34455566666666666666554433322 2 55555555555542 221 2444555555555444333222 344
Q ss_pred CCccEEEeecccCCHHH-HHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016371 205 KSIRILVLNCTGVNWMQ-VEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 205 ~~L~~L~L~~~~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
++|++|++++|.++... .+..+..+++|++|++++|.+++.++. +..+++|+.|++++|.+....+...+..+++
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE----EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc----ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 44555555544443210 012223444444444444444433221 3333444444444444333222122333344
Q ss_pred cCeEecCCCccccccCCCC---Cchhhhhhcccccc------cCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEE
Q 016371 284 LEQLYLNKNNLNRIYYPNN---DTIHELVSAHESHE------ESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIR 354 (390)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~---~~~~~~~~~~~~~~------~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 354 (390)
|++|++++|.++... |.. ...++.+..+.+.. ..+..+++|++|++++|++++.. +..+..+++|++|+
T Consensus 423 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 423 LIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLN 500 (570)
T ss_dssp CCEEECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEE
T ss_pred CCEEeCcCCcccccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCC-hhhhhcccCCCEEe
Confidence 444444444333321 111 11112222222211 12445556666666666665541 24455556666666
Q ss_pred ccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016371 355 LSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 355 l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
+++|.++. ..+.. ++++++|+.|+++
T Consensus 501 l~~n~l~~----~~~~~--~~~l~~L~~L~l~ 526 (570)
T 2z63_A 501 MASNQLKS----VPDGI--FDRLTSLQKIWLH 526 (570)
T ss_dssp CCSSCCSC----CCTTT--TTTCTTCCEEECC
T ss_pred CCCCcCCC----CCHHH--hhcccCCcEEEec
Confidence 66665553 11222 4555566655554
No 95
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=5.2e-22 Score=197.68 Aligned_cols=211 Identities=20% Similarity=0.187 Sum_probs=162.5
Q ss_pred ccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccE
Q 016371 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRI 209 (390)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~ 209 (390)
.+++|+.|++++|.+....+. ..+++|++|++++|.+.....++..+..+++|++|++++|.+...++.+..+++|++
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~ 400 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCE
Confidence 344555555555544433222 335889999999998886433356778899999999999988776666788899999
Q ss_pred EEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCC-chhhhhcCCCCCcCeEe
Q 016371 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE-WSEILKLCQIRSLEQLY 288 (390)
Q Consensus 210 L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~l~~L~~L~ 288 (390)
|++++|.+........+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+++ ..+ ..+..+++|++|+
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~ 476 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLD 476 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT---TTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEE
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh---hhhcCCcCcEEECcCCcCccccch-hhhhcccCCCEEE
Confidence 999998876422223457889999999999998877554 67888999999999998873 222 5678899999999
Q ss_pred cCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016371 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
|++|.++++. |.. +..+++|++|++++|++++.+ +..+..+++|++|++++|++...+
T Consensus 477 l~~n~l~~~~-~~~----------------~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 477 LSQCQLEQLS-PTA----------------FNSLSSLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp CTTSCCCEEC-TTT----------------TTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCCCccccCC-hhh----------------hhcccCCCEEeCCCCcCCCCC-HHHhhcccCCcEEEecCCcccCCC
Confidence 9999998874 443 678899999999999999874 367889999999999999998644
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=6.3e-22 Score=187.77 Aligned_cols=246 Identities=17% Similarity=0.142 Sum_probs=178.2
Q ss_pred eEEeecCCcceEEEEeChhHHHHHHhccccccEeecCCcccCCCC---c-ch------hhhcCcccEEECCCCcCCC--h
Q 016371 104 MYVLSASNKHVSIELVGKDKIQDKFSKFEELTSAALPYLGVSSPG---A-NI------GTIVTNLKELDLTGNLLSD--W 171 (390)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~---~-~~------~~~~~~L~~L~Ls~n~l~~--~ 171 (390)
+..+.+.... +...+...++..+..+++|+.|+|++|.+.... + .+ ...+++|++|+|++|.+.. .
T Consensus 34 L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 34 VKEIVLSGNT--IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp CCEEECTTSE--ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred ccEEECCCCC--CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 3344555443 444445567777889999999999998665432 2 22 1345999999999999986 3
Q ss_pred HHHHHHHhcCCCCCEEEccCCCCCCccC-C----CCCC---------CCccEEEeecccCCHHHHH---HHHhcCCcccE
Q 016371 172 KDIGAFGEQLPALAVLNLSNNLMSKEVT-G----LPQL---------KSIRILVLNCTGVNWMQVE---ILKHSLPALEE 234 (390)
Q Consensus 172 ~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~----~~~l---------~~L~~L~L~~~~l~~~~~~---~~~~~l~~L~~ 234 (390)
..++..+..+++|++|++++|.++...+ . +..+ ++|++|++++|.++...++ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 3578889999999999999999864322 2 2233 8999999999999854555 45678999999
Q ss_pred EeccCCCccccC--CCCCCccCCCCCccEEEcCCCCCCCch--h-hhhcCCCCCcCeEecCCCccccccCCCCCchhhhh
Q 016371 235 LHLMGNSISEIT--PVSSPIVQGFDNLQLLNLEDNCIAEWS--E-ILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELV 309 (390)
Q Consensus 235 L~L~~n~l~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 309 (390)
|++++|.++... ...+..+..+++|+.|+|++|.++... . ...+..+++|++|+|++|.+++.........+.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-- 269 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS-- 269 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH--
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh--
Confidence 999999998321 000114678899999999999986321 1 145778999999999999998763111100000
Q ss_pred hcccccccCCCCCCCCCEEeCCCCCCCCc---hhhhhc-cCCCCCcEEEccCCCCCC
Q 016371 310 SAHESHEESYLPFQNLCCLLLGNNMIEDL---ASIDSL-DSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 310 ~~~~~~~~~~~~~~~L~~L~L~~N~i~~~---~~~~~l-~~l~~L~~L~l~~n~l~~ 362 (390)
...+++|++|+|++|.|++. ..+..+ .++++|++|++++|+++.
T Consensus 270 ---------~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 270 ---------KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp ---------TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ---------hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 13479999999999999972 122455 568999999999999985
No 97
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=202.43 Aligned_cols=73 Identities=21% Similarity=0.194 Sum_probs=48.7
Q ss_pred HHHHhccccccEeecCCcccCCCCc--chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCcc
Q 016371 125 QDKFSKFEELTSAALPYLGVSSPGA--NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEV 198 (390)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~ 198 (390)
|..+..+++|++|+|++|.+.+..+ .....+++|++|+|++|.+.+. ..+..+.++++|++|++++|.++...
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-YLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-CCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc-ccchhHhhCCCCCEEECCCCcCCeeC
Confidence 4566777888888888887776333 2223347888888888877652 12245677888888888887776543
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=8.9e-21 Score=169.01 Aligned_cols=156 Identities=21% Similarity=0.199 Sum_probs=77.9
Q ss_pred ccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEE
Q 016371 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRIL 210 (390)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L 210 (390)
...+.++++++.+...+..+. ++++.|+|++|.+..+ .+..+..+++|++|++++|.++...+ .+..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATL--SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCcc--CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 345666777776666654332 4666677777766652 23345566666666666666665544 24455555555
Q ss_pred EeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecC
Q 016371 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLN 290 (390)
Q Consensus 211 ~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 290 (390)
++++|.++. ..+..+..+++|++|++++|.++.+++. .+..+++|+.|+|++|.++..++ ..+..+++|++|+|+
T Consensus 89 ~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 89 GLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSG---VFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLS 163 (251)
T ss_dssp ECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECC
T ss_pred ECCCCcccc-cChhHhcccCCCCEEEcCCCcCCCcChh---HhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECC
Confidence 555555442 1112223444444444444444443322 23344444444444444444332 233444444444444
Q ss_pred CCccccc
Q 016371 291 KNNLNRI 297 (390)
Q Consensus 291 ~n~l~~~ 297 (390)
+|.++.+
T Consensus 164 ~N~l~~~ 170 (251)
T 3m19_A 164 TNQLQSV 170 (251)
T ss_dssp SSCCSCC
T ss_pred CCcCCcc
Confidence 4444433
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.6e-21 Score=171.11 Aligned_cols=195 Identities=16% Similarity=0.171 Sum_probs=111.0
Q ss_pred cccEeecCCcccCCCCcchhhhcCcccEEECCCCc-CCChHHHHHHHhcCCCCCEEEccC-CCCCCccC-CCCCCCCccE
Q 016371 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNL-LSDWKDIGAFGEQLPALAVLNLSN-NLMSKEVT-GLPQLKSIRI 209 (390)
Q Consensus 133 ~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~i~~~~~~l~~L~~L~ls~-n~l~~~~~-~~~~l~~L~~ 209 (390)
+|+.|++++|.++..++.....+++|++|++++|. +..+. +..+..+++|++|++++ |.++...+ .+..+++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~--~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE--SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC--TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC--HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 56667777776666655223334667777776665 55321 12455666677777766 66665544 3556666666
Q ss_pred EEeecccCCHHHHHHHHhcCCccc---EEeccCC-CccccCCCCCCccCCCCCcc-EEEcCCCCCCCchhhhhcCCCCCc
Q 016371 210 LVLNCTGVNWMQVEILKHSLPALE---ELHLMGN-SISEITPVSSPIVQGFDNLQ-LLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 210 L~L~~~~l~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
|++++|.++. ++. +..+++|+ +|++++| .++.+++. .+..+++|+ .|++++|.++..+. ..+.. ++|
T Consensus 110 L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L 181 (239)
T 2xwt_C 110 LGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKL 181 (239)
T ss_dssp EEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEE
T ss_pred EeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCCCCcccCH-hhcCC-CCC
Confidence 6666666653 333 34555555 6666666 66655443 455566666 66666666664443 22333 566
Q ss_pred CeEecCCCc-cccccCCCCCchhhhhhcccccccCCCCC-CCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCC
Q 016371 285 EQLYLNKNN-LNRIYYPNNDTIHELVSAHESHEESYLPF-QNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 285 ~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n 358 (390)
++|+|++|+ ++.+. +.. +..+ ++|+.|++++|+|+.++. ..+++|+.|+++++
T Consensus 182 ~~L~L~~n~~l~~i~-~~~----------------~~~l~~~L~~L~l~~N~l~~l~~----~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 182 DAVYLNKNKYLTVID-KDA----------------FGGVYSGPSLLDVSQTSVTALPS----KGLEHLKELIARNT 236 (239)
T ss_dssp EEEECTTCTTCCEEC-TTT----------------TTTCSBCCSEEECTTCCCCCCCC----TTCTTCSEEECTTC
T ss_pred CEEEcCCCCCcccCC-HHH----------------hhccccCCcEEECCCCccccCCh----hHhccCceeeccCc
Confidence 666666663 66552 121 4455 666666666666665541 14556666666554
No 100
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.84 E-value=3.8e-21 Score=152.98 Aligned_cols=72 Identities=38% Similarity=0.701 Sum_probs=66.4
Q ss_pred CCCCCCCEEEeCCCCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCCcceeeeeccCCCC
Q 016371 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~g~~~g~~yf~~~~~~~gsf~~~~~~~~~ 81 (390)
..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|+++.++..+
T Consensus 37 ~~l~VG~RV~V~g~--~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~-p~~GiFVr~~kV~~~ 108 (172)
T 2cp6_A 37 RELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQ-PKYGLFAPVHKVTKI 108 (172)
T ss_dssp SCCCSSCEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCC-TTTEEEEEGGGCEEC
T ss_pred ccCccCCEEEECCC--ceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEECCEEeeeeC-CCeEEEechHHeEEC
Confidence 57999999999764 5699999999999999999999999999999999999999997 589999999988655
No 101
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.84 E-value=3.8e-21 Score=140.79 Aligned_cols=74 Identities=26% Similarity=0.445 Sum_probs=64.4
Q ss_pred CCCCCCCCEEEeC--CCC-eeeEEEEEeeecC---CCCCeEEEEEecCC---CCCCCCEECCEEEEecCCCCcceeeeec
Q 016371 6 PESYKLGQRVHSA--NDA-RRIGTVKYVGEVQ---GYSGTWLGVDWDYG---NGKHDGSINGVRYFQAKSQKSGSFVRVH 76 (390)
Q Consensus 6 ~~~~~~g~~v~~~--~~~-~~~~tv~~~g~~~---~~~~~w~Gve~d~~---~g~~~g~~~g~~yf~~~~~~~gsf~~~~ 76 (390)
...++||+||.+. +.. .+.|||||+|+++ +.+|.|+|||||+| .|||||+++|+|||+|. +++|.|++++
T Consensus 5 ~~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~-~~~G~Fv~~~ 83 (95)
T 1whl_A 5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCD-EDCGVFVALD 83 (95)
T ss_dssp CCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCC-TTTEEEECGG
T ss_pred cccCcCCCEEEEecCCCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecC-CCeEEEEcHH
Confidence 3679999999994 321 3569999999998 68999999999999 79999999999999995 5999999999
Q ss_pred cCCC
Q 016371 77 NLSP 80 (390)
Q Consensus 77 ~~~~ 80 (390)
++..
T Consensus 84 ~v~~ 87 (95)
T 1whl_A 84 KLEL 87 (95)
T ss_dssp GEEE
T ss_pred HeEE
Confidence 8754
No 102
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=1.8e-21 Score=188.85 Aligned_cols=264 Identities=17% Similarity=0.106 Sum_probs=171.1
Q ss_pred hhHHHHHHhccccccEeecCCcccCCCCc-chhhhcC----cccEEECCCCcCCCh--HHHHHHHhcCCCCCEEEccCCC
Q 016371 121 KDKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVT----NLKELDLTGNLLSDW--KDIGAFGEQLPALAVLNLSNNL 193 (390)
Q Consensus 121 ~~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~----~L~~L~Ls~n~l~~~--~~i~~~~~~l~~L~~L~ls~n~ 193 (390)
...++..+..+++|++|++++|.+...+. .+...++ +|++|++++|.+.+. ..++..+..+++|++|++++|.
T Consensus 45 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 45 CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 34778888999999999999998876544 4444445 799999999998853 4678888999999999999998
Q ss_pred CCCccC-C-----CCCCCCccEEEeecccCCHH---HHHHHHhcCCcccEEeccCCCccccCCC-CCCcc-CCCCCccEE
Q 016371 194 MSKEVT-G-----LPQLKSIRILVLNCTGVNWM---QVEILKHSLPALEELHLMGNSISEITPV-SSPIV-QGFDNLQLL 262 (390)
Q Consensus 194 l~~~~~-~-----~~~l~~L~~L~L~~~~l~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~-~~l~~L~~L 262 (390)
++.... . ....++|++|++++|.++.. .++..+..+++|++|++++|.+++.... +...+ ...++|+.|
T Consensus 125 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L 204 (461)
T 1z7x_W 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEE
T ss_pred CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEE
Confidence 864322 1 22456799999999888753 2455567788899999988887654221 00001 124578888
Q ss_pred EcCCCCCCCchh---hhhcCCCCCcCeEecCCCccccccCC-------CCCchhhhhhcccccccC---------CCCCC
Q 016371 263 NLEDNCIAEWSE---ILKLCQIRSLEQLYLNKNNLNRIYYP-------NNDTIHELVSAHESHEES---------YLPFQ 323 (390)
Q Consensus 263 ~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~~-------~~~~~~~~~~~~~~~~~~---------~~~~~ 323 (390)
++++|.++.... ...+..+++|++|++++|.+++.... .....++.+..+.+.... +..++
T Consensus 205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 888888776431 13455677888888888877654210 011222333333332222 22367
Q ss_pred CCCEEeCCCCCCCCchhhhhc----c-CCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 324 NLCCLLLGNNMIEDLASIDSL----D-SFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 324 ~L~~L~L~~N~i~~~~~~~~l----~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+|++|++++|.|++.. +..+ . ..++|++|++++|.+++.....++.. +..+++|+.|+++.
T Consensus 285 ~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 285 SLKELSLAGNELGDEG-ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV--LAQNRFLLELQISN 350 (461)
T ss_dssp TCCEEECTTCCCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH--HHHCSSCCEEECCS
T ss_pred CcceEECCCCCCchHH-HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH--HhhCCCccEEEccC
Confidence 7777777777776532 1222 2 23578888888887764322224444 67788999998874
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=6.9e-22 Score=181.85 Aligned_cols=223 Identities=17% Similarity=0.099 Sum_probs=162.4
Q ss_pred cccEeecCCcccCCCCc----chhhhcCcccEEECCCCcCCChHHHHHHH--hcCCCCCEEEccCCCCCCccC-----CC
Q 016371 133 ELTSAALPYLGVSSPGA----NIGTIVTNLKELDLTGNLLSDWKDIGAFG--EQLPALAVLNLSNNLMSKEVT-----GL 201 (390)
Q Consensus 133 ~L~~L~L~~~~i~~~~~----~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~--~~l~~L~~L~ls~n~l~~~~~-----~~ 201 (390)
.++.+.+.++.++.... .... +++|++|++++|.+.+ ..|..+ ..+++|++|++++|.+++..+ .+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLA-YSRLKELTLEDLKITG--TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHH-HSCCCEEEEESCCCBS--CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcc-cCceeEEEeeCCEecc--chhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 35666676666543221 1222 3779999999999886 445555 788999999999999886433 23
Q ss_pred CCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccc---cCCCCCCccCCCCCccEEEcCCCCCCCchhh-h-
Q 016371 202 PQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISE---ITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI-L- 276 (390)
Q Consensus 202 ~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~- 276 (390)
..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.+ .... ..+..+++|++|+|++|.++..+.. .
T Consensus 142 ~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 218 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGMETPTGVCAA 218 (310)
T ss_dssp TBCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCCCHHHHHHH
T ss_pred hhccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCCchHHHHHH
Confidence 468899999999999864 333445788999999999998765 2211 1346788999999999999876542 1
Q ss_pred hcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEcc
Q 016371 277 KLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLS 356 (390)
Q Consensus 277 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 356 (390)
.++.+++|++|+|++|.+++.. |..... ...+++|++|+|++|+|+.++ ..+ +++|++|+++
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~-p~~~~~-------------~~~~~~L~~L~Ls~N~l~~lp--~~~--~~~L~~L~Ls 280 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATV-NPSAPR-------------CMWSSALNSLNLSFAGLEQVP--KGL--PAKLRVLDLS 280 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCC-CSCCSS-------------CCCCTTCCCEECCSSCCCSCC--SCC--CSCCSCEECC
T ss_pred HHhcCCCCCEEECCCCCCCccc-hhhHHh-------------ccCcCcCCEEECCCCCCCchh--hhh--cCCCCEEECC
Confidence 2467899999999999998874 333100 223479999999999999775 344 3899999999
Q ss_pred CCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 357 ENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 357 ~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+|.|+. ++. .+.+++|+.|+++.
T Consensus 281 ~N~l~~-----~~~---~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 281 SNRLNR-----APQ---PDELPEVDNLTLDG 303 (310)
T ss_dssp SCCCCS-----CCC---TTSCCCCSCEECSS
T ss_pred CCcCCC-----Cch---hhhCCCccEEECcC
Confidence 999984 332 46789999998864
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=3.1e-20 Score=165.47 Aligned_cols=177 Identities=21% Similarity=0.213 Sum_probs=96.4
Q ss_pred cccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEE
Q 016371 157 NLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (390)
Q Consensus 157 ~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L 235 (390)
..+.++++++.++. +|..+ .++|+.|++++|.+....+ .+..+++|++|++++|.++. ..+..+..+++|++|
T Consensus 15 ~~~~l~~~~~~l~~---~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 15 GKKEVDCQGKSLDS---VPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTL 88 (251)
T ss_dssp GGTEEECTTCCCSS---CCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEE
T ss_pred CCeEEecCCCCccc---cCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEE
Confidence 45556666666553 23222 1456666666666655544 35566666666666666553 222233555666666
Q ss_pred eccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhccccc
Q 016371 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESH 315 (390)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 315 (390)
++++|.++..++. .+..+++|++|+|++|.++..++ ..+..+++|++|+|++|.|+.+. +..
T Consensus 89 ~L~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~-~~~------------- 150 (251)
T 3m19_A 89 GLANNQLASLPLG---VFDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIP-AGA------------- 150 (251)
T ss_dssp ECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTT-------------
T ss_pred ECCCCcccccChh---HhcccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccC-HHH-------------
Confidence 6666666655433 44555666666666666665543 34455666666666666666552 112
Q ss_pred ccCCCCCCCCCEEeCCCCCCC-CchhhhhccCCCCCcEEEccCCCCCC
Q 016371 316 EESYLPFQNLCCLLLGNNMIE-DLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 316 ~~~~~~~~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+..+++|++|+|++|+|+ -.+.. +..+++|++|++++|++..
T Consensus 151 ---~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 151 ---FDKLTNLQTLSLSTNQLQSVPHGA--FDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ---TTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSCCBCT
T ss_pred ---cCcCcCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCCceeC
Confidence 445566666666666553 11111 3345566666666666653
No 105
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=2.3e-21 Score=188.01 Aligned_cols=233 Identities=17% Similarity=0.126 Sum_probs=162.7
Q ss_pred EeChhHHHHHHhccccccEeecCCcccCCCCc-chhh----hcCcccEEECCCCcCCCh--HHHHHHHhcCCCCCEEEcc
Q 016371 118 LVGKDKIQDKFSKFEELTSAALPYLGVSSPGA-NIGT----IVTNLKELDLTGNLLSDW--KDIGAFGEQLPALAVLNLS 190 (390)
Q Consensus 118 ~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~----~~~~L~~L~Ls~n~l~~~--~~i~~~~~~l~~L~~L~ls 190 (390)
..+...++..+..+++|++|++++|.+...+. .+.. ..++|++|++++|.++.. ..++..+..+++|++|+++
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 34445677778888888888888888765443 2322 235889999999888762 3467778888999999999
Q ss_pred CCCCCCcc-----CC-CCCCCCccEEEeecccCCHHH---HHHHHhcCCcccEEeccCCCccccCCC-CCCcc-CCCCCc
Q 016371 191 NNLMSKEV-----TG-LPQLKSIRILVLNCTGVNWMQ---VEILKHSLPALEELHLMGNSISEITPV-SSPIV-QGFDNL 259 (390)
Q Consensus 191 ~n~l~~~~-----~~-~~~l~~L~~L~L~~~~l~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~-~~l~~L 259 (390)
+|.++... +. +..+++|++|++++|.++... ++..+..+++|++|++++|.+++.... +...+ ...++|
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L 315 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc
Confidence 98876532 11 235788999999999888644 455566788999999999988653211 00011 223689
Q ss_pred cEEEcCCCCCCCchh---hhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCC
Q 016371 260 QLLNLEDNCIAEWSE---ILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIE 336 (390)
Q Consensus 260 ~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~ 336 (390)
+.|++++|.++.... ...+..+++|++|+|++|.+++.........+ ....++|++|+|++|+|+
T Consensus 316 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l------------~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL------------GQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH------------TSTTCCCCEEECTTSCCC
T ss_pred eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH------------cCCCCceEEEECCCCCCC
Confidence 999999998886532 13456678999999999988875422110010 123679999999999998
Q ss_pred Cc---hhhhhccCCCCCcEEEccCCCCCC
Q 016371 337 DL---ASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 337 ~~---~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+. ..+..+..+++|++|++++|++++
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 51 123567789999999999999985
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=9.3e-21 Score=188.91 Aligned_cols=150 Identities=30% Similarity=0.422 Sum_probs=74.1
Q ss_pred ccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccE
Q 016371 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRI 209 (390)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~ 209 (390)
.+++|+.|++++|.+...+ .+.. +++|+.|+|++|.+.++. . +..+++|+.|+|++|.+... +.+..+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~-l~~L~~L~Ls~N~l~~~~---~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQY-LPNVTKLFLNGNKLTDIK---P-LTNLKNLGWLFLDENKIKDL-SSLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGG-CTTCCEEECTTSCCCCCG---G-GGGCTTCCEEECCSSCCCCC-TTSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCCh-HHcc-CCCCCEEEeeCCCCCCCh---h-hccCCCCCEEECcCCCCCCC-hhhccCCCCCE
Confidence 4445555555555555443 2222 355555555555555422 1 45555555555555555432 24445555555
Q ss_pred EEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEec
Q 016371 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYL 289 (390)
Q Consensus 210 L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 289 (390)
|+|++|.+.. ++. +..+++|+.|+|++|.++++. .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|
T Consensus 114 L~Ls~N~l~~--l~~-l~~l~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~L 182 (605)
T 1m9s_A 114 LSLEHNGISD--ING-LVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYL 182 (605)
T ss_dssp EECTTSCCCC--CGG-GGGCTTCSEEECCSSCCCCCG-----GGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEEC
T ss_pred EEecCCCCCC--Ccc-ccCCCccCEEECCCCccCCch-----hhcccCCCCEEECcCCcCCCchh---hccCCCCCEEEC
Confidence 5555555542 221 244555555555555554431 24445555555555555554432 444555555555
Q ss_pred CCCccccc
Q 016371 290 NKNNLNRI 297 (390)
Q Consensus 290 ~~n~l~~~ 297 (390)
++|.|+++
T Consensus 183 s~N~i~~l 190 (605)
T 1m9s_A 183 SKNHISDL 190 (605)
T ss_dssp CSSCCCBC
T ss_pred cCCCCCCC
Confidence 55555443
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=6.4e-20 Score=177.38 Aligned_cols=228 Identities=16% Similarity=0.147 Sum_probs=122.6
Q ss_pred HHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCC
Q 016371 124 IQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQ 203 (390)
Q Consensus 124 l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 203 (390)
+| .+..+++|++|++++|.+.+.+.. .++|++|++++|.+.. +| .+..+++|++|++++|++++.+..
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~---l~-~~~~l~~L~~L~l~~N~l~~l~~~--- 213 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEE---LP-ELQNLPFLTAIYADNNSLKKLPDL--- 213 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSS---CC-CCTTCTTCCEEECCSSCCSSCCCC---
T ss_pred Cc-ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCc---Cc-cccCCCCCCEEECCCCcCCcCCCC---
Confidence 44 366777777777777777765432 2577777777777765 33 356777777777777777653221
Q ss_pred CCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCC
Q 016371 204 LKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (390)
Q Consensus 204 l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 283 (390)
.++|++|++++|.+. .++. +..+++|++|++++|.+++++.. +++|+.|++++|.+++.+. .+++
T Consensus 214 ~~~L~~L~l~~n~l~--~lp~-~~~l~~L~~L~l~~N~l~~l~~~-------~~~L~~L~l~~N~l~~l~~-----~~~~ 278 (454)
T 1jl5_A 214 PLSLESIVAGNNILE--ELPE-LQNLPFLTTIYADNNLLKTLPDL-------PPSLEALNVRDNYLTDLPE-----LPQS 278 (454)
T ss_dssp CTTCCEEECCSSCCS--SCCC-CTTCTTCCEEECCSSCCSSCCSC-------CTTCCEEECCSSCCSCCCC-----CCTT
T ss_pred cCcccEEECcCCcCC--cccc-cCCCCCCCEEECCCCcCCccccc-------ccccCEEECCCCcccccCc-----ccCc
Confidence 146677777776665 2333 35666777777777766654321 2455555555555554332 1234
Q ss_pred cCeEecCCCcccccc-C-----------------CCCCchhhhhhcccccccCCCC-CCCCCEEeCCCCCCCCchhhhhc
Q 016371 284 LEQLYLNKNNLNRIY-Y-----------------PNNDTIHELVSAHESHEESYLP-FQNLCCLLLGNNMIEDLASIDSL 344 (390)
Q Consensus 284 L~~L~L~~n~l~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~N~i~~~~~~~~l 344 (390)
|++|++++|.++++. . +.....++.+..+.+...++.. +++|++|++++|+++.++.
T Consensus 279 L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~lp~---- 354 (454)
T 1jl5_A 279 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPE---- 354 (454)
T ss_dssp CCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC----
T ss_pred CCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCccccccc----
Confidence 444444444444431 0 2211233344444444433322 4667777777777666542
Q ss_pred cCCCCCcEEEccCCCCCCCCCcchhhhhhhhhc-------------CCceEecCcc
Q 016371 345 DSFPKLMDIRLSENPVSDPGRGGISRFAIIARL-------------GKIKILNGSE 387 (390)
Q Consensus 345 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l-------------~~L~~Ln~s~ 387 (390)
.+++|++|++++|++.... .+|.. ++.+ ++|+.|+++.
T Consensus 355 -~l~~L~~L~L~~N~l~~l~--~ip~~--l~~L~~n~~~~~i~~~~~~L~~L~ls~ 405 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFP--DIPES--VEDLRMNSHLAEVPELPQNLKQLHVET 405 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCC--CCCTT--CCEEECCC-------------------
T ss_pred -hhhhccEEECCCCCCCcCC--CChHH--HHhhhhcccccccccccCcCCEEECCC
Confidence 3677888888888876411 24444 4455 7788887764
No 108
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=2.9e-19 Score=178.42 Aligned_cols=218 Identities=17% Similarity=0.180 Sum_probs=159.7
Q ss_pred hhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC
Q 016371 121 KDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG 200 (390)
Q Consensus 121 ~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~ 200 (390)
+..+|..+. ++|+.|++++|.++.++. .+++|++|+|++|.++. +|. .+++|++|++++|.++..+.
T Consensus 52 L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N~l~~l~~- 118 (622)
T 3g06_A 52 LTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS---LPV---LPPGLLELSIFSNPLTHLPA- 118 (622)
T ss_dssp CSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC---CCC---CCTTCCEEEECSCCCCCCCC-
T ss_pred cCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc---CCC---CCCCCCEEECcCCcCCCCCC-
Confidence 344444332 678888888888876654 35788888888888775 333 67888888888888876544
Q ss_pred CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCC
Q 016371 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (390)
Q Consensus 201 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 280 (390)
.+++|+.|++++|.++. ++ ..+++|++|++++|.+++++. .+++|+.|++++|.++..+ ..
T Consensus 119 --~l~~L~~L~L~~N~l~~--lp---~~l~~L~~L~Ls~N~l~~l~~-------~~~~L~~L~L~~N~l~~l~-----~~ 179 (622)
T 3g06_A 119 --LPSGLCKLWIFGNQLTS--LP---VLPPGLQELSVSDNQLASLPA-------LPSELCKLWAYNNQLTSLP-----ML 179 (622)
T ss_dssp --CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSCCC-----CC
T ss_pred --CCCCcCEEECCCCCCCc--CC---CCCCCCCEEECcCCcCCCcCC-------ccCCCCEEECCCCCCCCCc-----cc
Confidence 55778888888887763 22 235788888888888876542 2367888888888888754 34
Q ss_pred CCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCC-CCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCC
Q 016371 281 IRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLP-FQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENP 359 (390)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~ 359 (390)
+++|+.|++++|.|+++ |.....++.+....|....+.. +++|+.|+|++|+|++++ ..+++|+.|++++|.
T Consensus 180 ~~~L~~L~Ls~N~l~~l--~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp-----~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 180 PSGLQELSVSDNQLASL--PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP-----VLPSELKELMVSGNR 252 (622)
T ss_dssp CTTCCEEECCSSCCSCC--CCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSC
T ss_pred CCCCcEEECCCCCCCCC--CCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC-----CCCCcCcEEECCCCC
Confidence 68999999999999986 5555666667666666555443 478999999999999865 457899999999999
Q ss_pred CCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 360 VSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 360 l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
|+. +|. .+++|+.|+++.
T Consensus 253 L~~-----lp~-----~~~~L~~L~Ls~ 270 (622)
T 3g06_A 253 LTS-----LPM-----LPSGLLSLSVYR 270 (622)
T ss_dssp CSC-----CCC-----CCTTCCEEECCS
T ss_pred CCc-----CCc-----ccccCcEEeCCC
Confidence 984 443 467888888764
No 109
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=1.5e-20 Score=166.18 Aligned_cols=195 Identities=13% Similarity=0.180 Sum_probs=157.5
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCC-CCCccC-CCCCCCCccEEEeec-ccCCHHHHHHHHhcCCcc
Q 016371 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNL-MSKEVT-GLPQLKSIRILVLNC-TGVNWMQVEILKHSLPAL 232 (390)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~-l~~~~~-~~~~l~~L~~L~L~~-~~l~~~~~~~~~~~l~~L 232 (390)
++|++|++++|.++.+. +..+..+++|++|++++|+ ++...+ .+..+++|++|++++ |.++. ..+..+..+++|
T Consensus 31 ~~l~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP--SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCSEEC--TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECCTTC
T ss_pred CcccEEEEeCCcceEEC--HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCCCCC
Confidence 68999999999998632 2467899999999999997 877766 578999999999998 88874 223445788999
Q ss_pred cEEeccCCCccccCCCCCCccCCCCCcc---EEEcCCC-CCCCchhhhhcCCCCCcC-eEecCCCccccccCCCCCchhh
Q 016371 233 EELHLMGNSISEITPVSSPIVQGFDNLQ---LLNLEDN-CIAEWSEILKLCQIRSLE-QLYLNKNNLNRIYYPNNDTIHE 307 (390)
Q Consensus 233 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~ 307 (390)
++|++++|.+++++. +..+++|+ .|++++| .++..+. ..+..+++|+ +|++++|.++.+ |...
T Consensus 108 ~~L~l~~n~l~~lp~-----~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i--~~~~---- 175 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPD-----LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSV--QGYA---- 175 (239)
T ss_dssp CEEEEEEECCCSCCC-----CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEE--CTTT----
T ss_pred CEEeCCCCCCccccc-----cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCccc--CHhh----
Confidence 999999999988642 55666776 9999999 8988775 5688899999 999999999976 4431
Q ss_pred hhhcccccccCCCCCCCCCEEeCCCCC-CCCchhhhhccCC-CCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecC
Q 016371 308 LVSAHESHEESYLPFQNLCCLLLGNNM-IEDLASIDSLDSF-PKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 385 (390)
Q Consensus 308 ~~~~~~~~~~~~~~~~~L~~L~L~~N~-i~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 385 (390)
+.. ++|++|++++|+ ++.++ ...+..+ ++|++|++++|+++. ++.. .+++|+.|++
T Consensus 176 -----------~~~-~~L~~L~L~~n~~l~~i~-~~~~~~l~~~L~~L~l~~N~l~~-----l~~~----~~~~L~~L~l 233 (239)
T 2xwt_C 176 -----------FNG-TKLDAVYLNKNKYLTVID-KDAFGGVYSGPSLLDVSQTSVTA-----LPSK----GLEHLKELIA 233 (239)
T ss_dssp -----------TTT-CEEEEEECTTCTTCCEEC-TTTTTTCSBCCSEEECTTCCCCC-----CCCT----TCTTCSEEEC
T ss_pred -----------cCC-CCCCEEEcCCCCCcccCC-HHHhhccccCCcEEECCCCcccc-----CChh----HhccCceeec
Confidence 333 799999999995 99874 3568888 999999999999985 4432 5778888876
Q ss_pred cc
Q 016371 386 SE 387 (390)
Q Consensus 386 s~ 387 (390)
+.
T Consensus 234 ~~ 235 (239)
T 2xwt_C 234 RN 235 (239)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.81 E-value=4.8e-21 Score=180.13 Aligned_cols=237 Identities=18% Similarity=0.151 Sum_probs=168.0
Q ss_pred EeecCCcccCCCCcchhhhcCcccEEECCCCcCCCh--HHHHHHHhcCC-CCCEEEccCCCCCCccC-CCCCC-----CC
Q 016371 136 SAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDW--KDIGAFGEQLP-ALAVLNLSNNLMSKEVT-GLPQL-----KS 206 (390)
Q Consensus 136 ~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~i~~~~~~l~-~L~~L~ls~n~l~~~~~-~~~~l-----~~ 206 (390)
.+.++.+.+++..+.+....++|++|+|++|.+.+. ..+...+..++ +|++|++++|.++...+ .+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 357888888877666666656799999999999863 34457788999 99999999999987643 33332 89
Q ss_pred ccEEEeecccCCHHH---HHHHHhcC-CcccEEeccCCCccccCCC-CCCccCC-CCCccEEEcCCCCCCCchh--h-hh
Q 016371 207 IRILVLNCTGVNWMQ---VEILKHSL-PALEELHLMGNSISEITPV-SSPIVQG-FDNLQLLNLEDNCIAEWSE--I-LK 277 (390)
Q Consensus 207 L~~L~L~~~~l~~~~---~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~~~~~~~-l~~L~~L~L~~n~l~~~~~--~-~~ 277 (390)
|++|++++|.++... +...+..+ ++|++|++++|.+++.... +...+.. .++|++|+|++|.+++... + ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999987433 33344555 8999999999999876532 0112334 3699999999999985432 1 33
Q ss_pred cCCCC-CcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCC-CCCCEEeCCCCCCCCchh---hhhccC-CCCCc
Q 016371 278 LCQIR-SLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPF-QNLCCLLLGNNMIEDLAS---IDSLDS-FPKLM 351 (390)
Q Consensus 278 l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~N~i~~~~~---~~~l~~-l~~L~ 351 (390)
+..++ +|++|+|++|.+++......... +..+ ++|++|+|++|.|++... ...+.. .++|+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------------l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKF-------------LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHH-------------HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHH-------------HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCce
Confidence 45555 99999999999987632111000 2344 599999999999987321 134544 46999
Q ss_pred EEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 352 DIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 352 ~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+|+|++|++.+.....++. .+..+++|+.|+++.
T Consensus 229 ~L~Ls~N~l~~~~~~~l~~--~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 229 SLNLCLNCLHGPSLENLKL--LKDSLKHLQTVYLDY 262 (362)
T ss_dssp EEECCSSCCCCCCHHHHHH--TTTTTTTCSEEEEEH
T ss_pred EEECcCCCCCcHHHHHHHH--HHhcCCCccEEEecc
Confidence 9999999998644222232 256677777777653
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.4e-19 Score=178.64 Aligned_cols=195 Identities=22% Similarity=0.254 Sum_probs=154.8
Q ss_pred ccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEE
Q 016371 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILV 211 (390)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~ 211 (390)
.+|+.|++++|.+++++..+ +++|++|+|++|.++. +| ..+++|++|++++|.+++.+. +.. +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~---ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQNALIS---LP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSC---CC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcc---cc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 48999999999999876655 3899999999999985 55 568999999999999998554 544 999999
Q ss_pred eecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCC
Q 016371 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (390)
Q Consensus 212 L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 291 (390)
+++|.++. ++. .+++|++|++++|.+++++. .+++|+.|+|++|.++..+. +. ++|+.|+|++
T Consensus 127 Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~L~~lp~---l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 127 VDNNQLTM--LPE---LPALLEYINADNNQLTMLPE-------LPTSLEVLSVRNNQLTFLPE---LP--ESLEALDVST 189 (571)
T ss_dssp CCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSCCCC---CC--TTCCEEECCS
T ss_pred CCCCcCCC--CCC---cCccccEEeCCCCccCcCCC-------cCCCcCEEECCCCCCCCcch---hh--CCCCEEECcC
Confidence 99999985 443 68899999999999987542 46899999999999999664 44 8999999999
Q ss_pred CccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhh
Q 016371 292 NNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRF 371 (390)
Q Consensus 292 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 371 (390)
|.|+.+ |.....+ ....+.|+.|+|++|+|+.+| ..+..+++|+.|+|++|+++ +.+|..
T Consensus 190 N~L~~l--p~~~~~L------------~~~~~~L~~L~Ls~N~l~~lp--~~l~~l~~L~~L~L~~N~l~----~~~p~~ 249 (571)
T 3cvr_A 190 NLLESL--PAVPVRN------------HHSEETEIFFRCRENRITHIP--ENILSLDPTCTIILEDNPLS----SRIRES 249 (571)
T ss_dssp SCCSSC--CCCC--------------------CCEEEECCSSCCCCCC--GGGGGSCTTEEEECCSSSCC----HHHHHH
T ss_pred CCCCch--hhHHHhh------------hcccccceEEecCCCcceecC--HHHhcCCCCCEEEeeCCcCC----CcCHHH
Confidence 999976 4421000 122344599999999999876 56777999999999999998 345554
Q ss_pred hhhhhc
Q 016371 372 AIIARL 377 (390)
Q Consensus 372 ~~i~~l 377 (390)
+..+
T Consensus 250 --l~~l 253 (571)
T 3cvr_A 250 --LSQQ 253 (571)
T ss_dssp --HHHH
T ss_pred --HHHh
Confidence 4444
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=3.2e-20 Score=172.45 Aligned_cols=225 Identities=15% Similarity=0.122 Sum_probs=165.7
Q ss_pred ccccEeecCCcccCCCCcchhhh-cCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCc-cC-CCCCCCCcc
Q 016371 132 EELTSAALPYLGVSSPGANIGTI-VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE-VT-GLPQLKSIR 208 (390)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~-~~-~~~~l~~L~ 208 (390)
..++.++++++.+.. ..+... .++++.|++++|.+.+ ..+ .+..+++|++|++++|.+... .+ .+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~--~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQ--PLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECS--CCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCCH--HHHHhhhhccceEEEcCCccccc--cch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 347889999887762 222221 2889999999999886 222 255789999999999988653 33 467889999
Q ss_pred EEEeecccCCHHHHHHHHhcCCcccEEeccCC-CccccCCCCCCccCCCCCccEEEcCCC-CCCCchhhhhcCCCC-CcC
Q 016371 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGN-SISEITPVSSPIVQGFDNLQLLNLEDN-CIAEWSEILKLCQIR-SLE 285 (390)
Q Consensus 209 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~l~-~L~ 285 (390)
+|++++|.++.. .+..+..+++|++|++++| .+++... +..+..+++|++|++++| .+++......+..++ +|+
T Consensus 122 ~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 122 NLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFAL--QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp EEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHH--HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred EEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHHH--HHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 999999998864 4445577999999999999 6764211 124667899999999999 888643224567788 999
Q ss_pred eEecCCC--ccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCC-CCCchhhhhccCCCCCcEEEccCCC-CC
Q 016371 286 QLYLNKN--NLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNM-IEDLASIDSLDSFPKLMDIRLSENP-VS 361 (390)
Q Consensus 286 ~L~L~~n--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~n~-l~ 361 (390)
+|++++| .+++...+.. +..+++|++|++++|. +++. .+..+..+++|++|++++|. +.
T Consensus 199 ~L~l~~~~~~~~~~~l~~~----------------~~~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTL----------------VRRCPNLVHLDLSDSVMLKND-CFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp EEECCSCGGGSCHHHHHHH----------------HHHCTTCSEEECTTCTTCCGG-GGGGGGGCTTCCEEECTTCTTCC
T ss_pred EEEeCCCcccCCHHHHHHH----------------HhhCCCCCEEeCCCCCcCCHH-HHHHHhCCCCCCEeeCCCCCCCC
Confidence 9999999 4554322332 4568999999999998 6653 45678889999999999996 32
Q ss_pred CCCCcchhhhhhhhhcCCceEecCcc
Q 016371 362 DPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 362 ~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
+ .... .++++++|+.|+++.
T Consensus 262 ~----~~~~--~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 262 P----ETLL--ELGEIPTLKTLQVFG 281 (336)
T ss_dssp G----GGGG--GGGGCTTCCEEECTT
T ss_pred H----HHHH--HHhcCCCCCEEeccC
Confidence 1 1112 378899999999874
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=3.2e-19 Score=162.43 Aligned_cols=174 Identities=28% Similarity=0.365 Sum_probs=149.3
Q ss_pred hccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCcc
Q 016371 129 SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIR 208 (390)
Q Consensus 129 ~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~ 208 (390)
..+++|+.|++++|.+...+ .+.. +++|++|++++|.++++. . +..+++|++|++++|.++.. +.+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~-l~~L~~L~L~~n~l~~~~---~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQY-LPNVTKLFLNGNKLTDIK---P-LANLKNLGWLFLDENKVKDL-SSLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGG-CTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCG-GGGTTCTTCC
T ss_pred hhcCcccEEEccCCCcccCh-hHhc-CCCCCEEEccCCccCCCc---c-cccCCCCCEEECCCCcCCCC-hhhccCCCCC
Confidence 45788999999999998875 3444 599999999999999743 3 88999999999999999874 4588999999
Q ss_pred EEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEe
Q 016371 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (390)
Q Consensus 209 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 288 (390)
+|++++|.++. ++ .+..+++|++|++++|.+++.. .+..+++|+.|++++|.+++.++ +..+++|+.|+
T Consensus 116 ~L~L~~n~i~~--~~-~l~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~ 184 (291)
T 1h6t_A 116 SLSLEHNGISD--IN-GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLY 184 (291)
T ss_dssp EEECTTSCCCC--CG-GGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEE
T ss_pred EEECCCCcCCC--Ch-hhcCCCCCCEEEccCCcCCcch-----hhccCCCCCEEEccCCccccchh---hcCCCccCEEE
Confidence 99999999985 33 3478999999999999998862 57889999999999999998764 78899999999
Q ss_pred cCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCch
Q 016371 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLA 339 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~ 339 (390)
+++|.++++ +. +..+++|+.|++++|+++..+
T Consensus 185 L~~N~i~~l--~~-----------------l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 185 LSKNHISDL--RA-----------------LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCSSCCCBC--GG-----------------GTTCTTCSEEEEEEEEEECCC
T ss_pred CCCCcCCCC--hh-----------------hccCCCCCEEECcCCcccCCc
Confidence 999999987 32 567899999999999998754
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=3e-20 Score=166.75 Aligned_cols=168 Identities=19% Similarity=0.203 Sum_probs=86.6
Q ss_pred cccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEE
Q 016371 131 FEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL 210 (390)
Q Consensus 131 l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L 210 (390)
+.++..++++.+.+.... .+.. +++|+.|++++|.+..+ + .+..+++|++|++++|+++...+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~-l~~L~~L~l~~n~i~~l---~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKE-LSGVQNFNGDNSNIQSL---A-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHH-HTTCSEEECTTSCCCCC---T-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc-chhh-cCcCcEEECcCCCcccc---h-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEE
Confidence 444555566666665543 2333 36666666666666643 2 35566666666666666655433 4445555555
Q ss_pred EeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecC
Q 016371 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLN 290 (390)
Q Consensus 211 ~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 290 (390)
++++|. +++.+.. .. ++|+.|+|++|.+++.+ .+..+++|+.|+|+
T Consensus 91 ~L~~N~-------------------------l~~l~~~-----~~-~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 91 SVNRNR-------------------------LKNLNGI-----PS-ACLSRLFLDNNELRDTD---SLIHLKNLEILSIR 136 (263)
T ss_dssp ECCSSC-------------------------CSCCTTC-----CC-SSCCEEECCSSCCSBSG---GGTTCTTCCEEECT
T ss_pred ECCCCc-------------------------cCCcCcc-----cc-CcccEEEccCCccCCCh---hhcCcccccEEECC
Confidence 555554 4443221 11 45555555555555432 24455555555555
Q ss_pred CCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016371 291 KNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 291 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
+|+++++ +. +..+++|++|++++|+|+++ ..+..+++|+.|++++|++.
T Consensus 137 ~N~i~~~--~~-----------------l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 137 NNKLKSI--VM-----------------LGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TSCCCBC--GG-----------------GGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEE
T ss_pred CCcCCCC--hH-----------------HccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCccc
Confidence 5555544 11 33445555555555555544 23445555555555555554
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=7.5e-19 Score=169.89 Aligned_cols=203 Identities=20% Similarity=0.181 Sum_probs=101.5
Q ss_pred cccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEe
Q 016371 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVL 212 (390)
Q Consensus 133 ~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L 212 (390)
+|++|++++|.+...+ .+.. +++|+.|++++|.+.++. . ..++|++|++++|.+... +.+..+++|++|++
T Consensus 174 ~L~~L~L~~n~l~~l~-~~~~-l~~L~~L~l~~N~l~~l~---~---~~~~L~~L~l~~n~l~~l-p~~~~l~~L~~L~l 244 (454)
T 1jl5_A 174 SLEFIAAGNNQLEELP-ELQN-LPFLTAIYADNNSLKKLP---D---LPLSLESIVAGNNILEEL-PELQNLPFLTTIYA 244 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTT-CTTCCEEECCSSCCSSCC---C---CCTTCCEEECCSSCCSSC-CCCTTCTTCCEEEC
T ss_pred cccEEECcCCcCCcCc-cccC-CCCCCEEECCCCcCCcCC---C---CcCcccEEECcCCcCCcc-cccCCCCCCCEEEC
Confidence 4555555555555533 2322 355555555555554321 1 113455555555554422 23444455555555
Q ss_pred ecccCCHHHHHHH-----------------HhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhh
Q 016371 213 NCTGVNWMQVEIL-----------------KHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI 275 (390)
Q Consensus 213 ~~~~l~~~~~~~~-----------------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 275 (390)
++|.++. ++.. -..+++|++|++++|.+++++.. .++|+.|++++|.+++.+
T Consensus 245 ~~N~l~~--l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~-------~~~L~~L~l~~N~l~~i~-- 313 (454)
T 1jl5_A 245 DNNLLKT--LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL-------PPNLYYLNASSNEIRSLC-- 313 (454)
T ss_dssp CSSCCSS--CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCC-------CTTCCEEECCSSCCSEEC--
T ss_pred CCCcCCc--ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCc-------CCcCCEEECcCCcCCccc--
Confidence 5554432 1110 01123445555555544443210 135555666665555422
Q ss_pred hhcCCC-CCcCeEecCCCccccccCCCCCchhhhhhcccccccCCC-CCCCCCEEeCCCCCCCCch-hhhhccCC-----
Q 016371 276 LKLCQI-RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYL-PFQNLCCLLLGNNMIEDLA-SIDSLDSF----- 347 (390)
Q Consensus 276 ~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~N~i~~~~-~~~~l~~l----- 347 (390)
.+ ++|++|++++|.++++ |.....++.+..+.+....+. .+++|++|++++|++++++ .+..+..+
T Consensus 314 ----~~~~~L~~L~Ls~N~l~~l--p~~~~~L~~L~L~~N~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~ 387 (454)
T 1jl5_A 314 ----DLPPSLEELNVSNNKLIEL--PALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSH 387 (454)
T ss_dssp ----CCCTTCCEEECCSSCCSCC--CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-
T ss_pred ----CCcCcCCEEECCCCccccc--cccCCcCCEEECCCCccccccchhhhccEEECCCCCCCcCCCChHHHHhhhhccc
Confidence 23 5899999999999875 666666777777766555432 3689999999999999853 23455555
Q ss_pred --------CCCcEEEccCCCCC
Q 016371 348 --------PKLMDIRLSENPVS 361 (390)
Q Consensus 348 --------~~L~~L~l~~n~l~ 361 (390)
++|++|++++|++.
T Consensus 388 ~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 388 LAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp ----------------------
T ss_pred ccccccccCcCCEEECCCCcCC
Confidence 88999999999998
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.5e-18 Score=152.43 Aligned_cols=178 Identities=19% Similarity=0.240 Sum_probs=113.3
Q ss_pred CEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEc
Q 016371 185 AVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNL 264 (390)
Q Consensus 185 ~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 264 (390)
+.++++++++...+..+. ++|++|+|++|.++. ..+..+..+++|++|+|++|.++.++.. .+..+++|+.|+|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~---~~~~l~~L~~L~L 95 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVG---VFDSLTQLTVLDL 95 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEEC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChh---hcccCCCcCEEEC
Confidence 344555554444433332 455566666655553 1223335667777777777777666543 4667788888888
Q ss_pred CCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhc
Q 016371 265 EDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSL 344 (390)
Q Consensus 265 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l 344 (390)
++|.++..+. ..+..+++|++|+|++|.|+.+ |.. +..+++|++|+|++|+|+.++. ..+
T Consensus 96 s~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~l--p~~----------------~~~l~~L~~L~L~~N~l~~~~~-~~~ 155 (229)
T 3e6j_A 96 GTNQLTVLPS-AVFDRLVHLKELFMCCNKLTEL--PRG----------------IERLTHLTHLALDQNQLKSIPH-GAF 155 (229)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCSC--CTT----------------GGGCTTCSEEECCSSCCCCCCT-TTT
T ss_pred CCCcCCccCh-hHhCcchhhCeEeccCCccccc--Ccc----------------cccCCCCCEEECCCCcCCccCH-HHH
Confidence 8888887664 4567788888888888888865 554 5667888888888888887643 567
Q ss_pred cCCCCCcEEEccCCCCCCCCC-cchhhhhhhhhcCCceEecCccc
Q 016371 345 DSFPKLMDIRLSENPVSDPGR-GGISRFAIIARLGKIKILNGSEV 388 (390)
Q Consensus 345 ~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~i~~l~~L~~Ln~s~i 388 (390)
..+++|++|++++|++..++. -...+..+..+.+.+..+++..|
T Consensus 156 ~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v 200 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAV 200 (229)
T ss_dssp TTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEE
T ss_pred hCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCccc
Confidence 778888888888888875431 11112223344556666666443
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.1e-18 Score=173.82 Aligned_cols=214 Identities=22% Similarity=0.240 Sum_probs=169.0
Q ss_pred cccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEe
Q 016371 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVL 212 (390)
Q Consensus 133 ~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L 212 (390)
.+..+.+..+.+.... .... +++|+.|++++|.+..+. .+..+++|+.|+|++|++....+ +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~-~~~~-L~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV-TQNE-LNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEE-CHHH-HTTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEEC
T ss_pred HHHHHhccCCCccccc-chhc-CCCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEEC
Confidence 3444566666666543 3334 499999999999998743 47899999999999999988765 889999999999
Q ss_pred ecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCC
Q 016371 213 NCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKN 292 (390)
Q Consensus 213 ~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n 292 (390)
++|.+.. ++ .+..+++|++|+|++|.++.+. .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|
T Consensus 95 s~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 95 DENKIKD--LS-SLKDLKKLKSLSLEHNGISDIN-----GLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CSSCCCC--CT-TSTTCTTCCEEECTTSCCCCCG-----GGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSS
T ss_pred cCCCCCC--Ch-hhccCCCCCEEEecCCCCCCCc-----cccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCC
Confidence 9999884 34 3578999999999999998753 478899999999999999986 35788999999999999
Q ss_pred ccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhh
Q 016371 293 NLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFA 372 (390)
Q Consensus 293 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 372 (390)
.|+++. . +..+++|+.|+|++|+|++++ .+..+++|+.|+|++|++..........
T Consensus 164 ~l~~~~--~-----------------l~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~L~~N~l~~~p~~~~~~-- 219 (605)
T 1m9s_A 164 QISDIV--P-----------------LAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPINHQSN-- 219 (605)
T ss_dssp CCCCCG--G-----------------GTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEECCSEEEECCCCCCCSS--
T ss_pred cCCCch--h-----------------hccCCCCCEEECcCCCCCCCh---HHccCCCCCEEEccCCcCcCCccccccc--
Confidence 999873 2 367899999999999999874 5888999999999999998643221111
Q ss_pred hhhhcCCceEecCcccC
Q 016371 373 IIARLGKIKILNGSEVN 389 (390)
Q Consensus 373 ~i~~l~~L~~Ln~s~i~ 389 (390)
+..++.|+.+++..++
T Consensus 220 -l~~~~~l~~l~g~~~~ 235 (605)
T 1m9s_A 220 -LVVPNTVKNTDGSLVT 235 (605)
T ss_dssp -CEEECCCBCSSSCBCC
T ss_pred -EEecccccccCCCCcC
Confidence 3345556666665543
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=7.8e-19 Score=150.47 Aligned_cols=153 Identities=19% Similarity=0.284 Sum_probs=106.7
Q ss_pred cCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCc
Q 016371 180 QLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNL 259 (390)
Q Consensus 180 ~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 259 (390)
.+++|+.|++++|.+.... .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+. .+..+++|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L 114 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN--YN-PISGLSNLERLRIMGKDVTSDKIP---NLSGLTSL 114 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC--CG-GGTTCTTCCEEEEECTTCBGGGSC---CCTTCTTC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc--ch-hhhcCCCCCEEEeECCccCcccCh---hhcCCCCC
Confidence 3444555555555554322 44455555666665554442 22 235677888888888888764433 57788999
Q ss_pred cEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCc-cccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCc
Q 016371 260 QLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN-LNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDL 338 (390)
Q Consensus 260 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~ 338 (390)
+.|++++|.+++..+ ..++.+++|++|++++|. ++++ +. +..+++|++|++++|+|+++
T Consensus 115 ~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~--~~-----------------l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 115 TLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDI--MP-----------------LKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp CEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCC--GG-----------------GGGCSSCCEEECTTBCCCCC
T ss_pred CEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCcccc--Hh-----------------hcCCCCCCEEECCCCCCcCh
Confidence 999999999987543 567889999999999998 7776 32 56789999999999999986
Q ss_pred hhhhhccCCCCCcEEEccCCCCCC
Q 016371 339 ASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 339 ~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+ .+..+++|++|++++|+|.+
T Consensus 175 ~---~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 175 R---GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp T---TGGGCSSCCEEEECBC----
T ss_pred H---HhccCCCCCEEEeeCcccCC
Confidence 5 57788999999999999863
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=1e-18 Score=175.82 Aligned_cols=187 Identities=24% Similarity=0.226 Sum_probs=105.7
Q ss_pred cCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCC-------------------------CCccE
Q 016371 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQL-------------------------KSIRI 209 (390)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l-------------------------~~L~~ 209 (390)
+++|+.|+++.|.+......+.....+.+|+.|+++.+.+......+..+ .+++.
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence 47778888888777543334444556666666666665544333334444 44445
Q ss_pred EEeecccCCHHHHHHHHhcCCcccEEeccCCCccc-cCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEe
Q 016371 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISE-ITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (390)
Q Consensus 210 L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 288 (390)
++++.|.+.. ..+..+..++.|+.|++++|.+.. ..+. .+..+++|+.|+|++|++++.++ ..+..+++|++|+
T Consensus 450 l~ls~n~l~~-~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~---~~~~l~~L~~L~Ls~N~L~~l~~-~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 450 LDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLN 524 (635)
T ss_dssp EECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEE
T ss_pred cccccccccc-ccccccccchhhhhhhhhhcccccccCch---hhhhccccCEEECCCCccCCcCh-HHHcCCCCCCEEE
Confidence 5555444432 122233445556666666655332 2222 45556666666666666666544 4556666666666
Q ss_pred cCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCC-CCCcEEEccCCCCCCCC
Q 016371 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSF-PKLMDIRLSENPVSDPG 364 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~ 364 (390)
|++|+|+++. +.. +..+++|++|+|++|+|++.+ ++.+..+ ++|++|+|++||+.-++
T Consensus 525 Ls~N~l~~l~-~~~----------------~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 525 MSHNNFFSLD-TFP----------------YKCLNSLQVLDYSLNHIMTSK-KQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp CTTSCCCBCC-CGG----------------GTTCTTCCEEECTTSCCCBCC-SSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCCcCCCCC-hhH----------------HhCCCCCCEEECCCCcCCCCC-HHHHHhhhCcCCEEEeeCCCCcccC
Confidence 6666666652 221 455667777777777776653 3455555 46777777777776443
No 120
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.77 E-value=9.7e-19 Score=124.08 Aligned_cols=71 Identities=25% Similarity=0.409 Sum_probs=61.1
Q ss_pred CCCCCCCEEEeCCC-CeeeEEEEEeeecCCC--CCeEEEEEecCCCCCCCCEECCEEEE-ecCCCCcceeeeeccC
Q 016371 7 ESYKLGQRVHSAND-ARRIGTVKYVGEVQGY--SGTWLGVDWDYGNGKHDGSINGVRYF-QAKSQKSGSFVRVHNL 78 (390)
Q Consensus 7 ~~~~~g~~v~~~~~-~~~~~tv~~~g~~~~~--~~~w~Gve~d~~~g~~~g~~~g~~yf-~~~~~~~gsf~~~~~~ 78 (390)
+.++||+|+.+... ..++|||||+|++++. +|.|+|||+|+|.|||||+++|+||| .|.. ++|.|+.+..+
T Consensus 8 ~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~~-~~g~fV~~~d~ 82 (92)
T 1whm_A 8 PPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACV-ESTILLHINDI 82 (92)
T ss_dssp CSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCT-TTEEEEEGGGE
T ss_pred cCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccCC-CcceEcccccC
Confidence 56899999988632 2467999999999863 58999999999999999999999999 5554 99999998776
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=5.7e-18 Score=147.66 Aligned_cols=155 Identities=20% Similarity=0.291 Sum_probs=106.2
Q ss_pred CEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEc
Q 016371 185 AVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNL 264 (390)
Q Consensus 185 ~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 264 (390)
+.+++++|.++..+..+. ..+++|++++|.++.......+..+++|++|++++|.++++.+. .+..+++|+.|+|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~---~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG---AFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT---TTTTCTTCCEEEC
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH---HhCCCCCCCEEEC
Confidence 355555555554433332 23456666666665321222346677788888888887777654 5777888888888
Q ss_pred CCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhc
Q 016371 265 EDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSL 344 (390)
Q Consensus 265 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l 344 (390)
++|.++..++ ..+..+++|++|+|++|.|+.+. |.. +..+++|++|+|++|+|++.+ +..+
T Consensus 89 s~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~-~~~~ 149 (220)
T 2v70_A 89 TSNRLENVQH-KMFKGLESLKTLMLRSNRITCVG-NDS----------------FIGLSSVRLLSLYDNQITTVA-PGAF 149 (220)
T ss_dssp CSSCCCCCCG-GGGTTCSSCCEEECTTSCCCCBC-TTS----------------STTCTTCSEEECTTSCCCCBC-TTTT
T ss_pred CCCccCccCH-hHhcCCcCCCEEECCCCcCCeEC-HhH----------------cCCCccCCEEECCCCcCCEEC-HHHh
Confidence 8888887665 56777888888888888888764 333 567788888888888888763 3667
Q ss_pred cCCCCCcEEEccCCCCCCC
Q 016371 345 DSFPKLMDIRLSENPVSDP 363 (390)
Q Consensus 345 ~~l~~L~~L~l~~n~l~~~ 363 (390)
..+++|++|++++|++..+
T Consensus 150 ~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTCTTCCEEECCSCCEECS
T ss_pred cCCCCCCEEEecCcCCcCC
Confidence 7888888888888888643
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1e-17 Score=146.06 Aligned_cols=114 Identities=27% Similarity=0.377 Sum_probs=61.1
Q ss_pred hcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchh
Q 016371 227 HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIH 306 (390)
Q Consensus 227 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 306 (390)
..+++|++|+|++|.++.+.+. .+..+++|+.|+|++|.++..+. ..+..+++|++|+|++|.|+.+. +..
T Consensus 53 ~~l~~L~~L~Ls~N~i~~~~~~---~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~-~~~---- 123 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQISELAPD---AFQGLRSLNSLVLYGNKITELPK-SLFEGLFSLQLLLLNANKINCLR-VDA---- 123 (220)
T ss_dssp TTCTTCCEEECCSSCCCEECTT---TTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTT----
T ss_pred hCCCCCCEEECCCCcCCCcCHH---HhhCCcCCCEEECCCCcCCccCH-hHccCCCCCCEEECCCCCCCEeC-HHH----
Confidence 3445555555555555544332 35555556666666665555443 33455566666666666665542 222
Q ss_pred hhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016371 307 ELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+..+++|++|+|++|+|++++ ...+..+++|++|+|++|++.-
T Consensus 124 ------------~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 124 ------------FQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp ------------TTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCEEC
T ss_pred ------------cCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCCCcCC
Confidence 445556666666666665543 2345555666666666666543
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.8e-18 Score=149.42 Aligned_cols=169 Identities=21% Similarity=0.220 Sum_probs=84.6
Q ss_pred cEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeec
Q 016371 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNC 214 (390)
Q Consensus 135 ~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~ 214 (390)
+.++++++.+...+..+ .++|++|++++|.++.+ .+..+..+++|++|++++|+++...+.
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------- 70 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSL--PNGVFDELTSLTQLYLGGNKLQSLPNG-------------- 70 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCC--CTTTTTTCTTCSEEECCSSCCCCCCTT--------------
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcC--ChhhhcccccCcEEECCCCccCccChh--------------
Confidence 34555555555544322 24556666666655531 122344555555555555555543332
Q ss_pred ccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCcc
Q 016371 215 TGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNL 294 (390)
Q Consensus 215 ~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l 294 (390)
.+..+++|++|++++|.++..++. .+..+++|++|++++|.++..++ ..+..+++|++|+|++|.+
T Consensus 71 ----------~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 71 ----------VFNKLTSLTYLNLSTNQLQSLPNG---VFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp ----------TTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC
T ss_pred ----------hcCCCCCcCEEECCCCcCCccCHh---HhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCcc
Confidence 123444555555555555544332 34455556666666665555443 3345555666666666665
Q ss_pred ccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCC
Q 016371 295 NRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
+++. +.. +..+++|++|++++|.+.. .+++|+.|+++.|.++
T Consensus 137 ~~~~-~~~----------------~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 137 KSVP-DGV----------------FDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp SCCC-TTT----------------TTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCT
T ss_pred ceeC-HHH----------------hccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCC
Confidence 5442 111 3445566666666664432 2445555555555555
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=1.2e-18 Score=162.90 Aligned_cols=229 Identities=16% Similarity=0.147 Sum_probs=154.0
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHH-HHHhcCCCCCE-EEccCCCCCCc
Q 016371 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIG-AFGEQLPALAV-LNLSNNLMSKE 197 (390)
Q Consensus 120 g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~-~~~~~l~~L~~-L~ls~n~l~~~ 197 (390)
++..+|..+ .+++++|+|++|.|+.+++..+..+++|++|+|++|.+.. .++ ..+.++++|.. +.++.|++...
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~--~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE--VIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC--EECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC--ccChhHhhcchhhhhhhcccCCccccc
Confidence 344555433 3578888999998888776443445889999999888754 233 34567777765 55566888777
Q ss_pred cC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccC-CCccccCCCCCCccCCC-CCccEEEcCCCCCCCchh
Q 016371 198 VT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMG-NSISEITPVSSPIVQGF-DNLQLLNLEDNCIAEWSE 274 (390)
Q Consensus 198 ~~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~ 274 (390)
.+ .+..+++|++|++++|.+... .+..+....++..|++.+ +.+..+... .+..+ ..++.|+|++|.++..+.
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~l~~l~l~~~~~i~~l~~~---~f~~~~~~l~~L~L~~N~i~~i~~ 171 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKVLLDIQDNINIHTIERN---SFVGLSFESVILWLNKNGIQEIHN 171 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSC-CCCTTCCBSSCEEEEEESCTTCCEECTT---SSTTSBSSCEEEECCSSCCCEECT
T ss_pred CchhhhhccccccccccccccccC-Cchhhcccchhhhhhhcccccccccccc---chhhcchhhhhhccccccccCCCh
Confidence 65 477888899999988887631 111223344567777765 456665543 34444 467888999998887664
Q ss_pred hhhcCCCCCcCeEecCC-CccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEE
Q 016371 275 ILKLCQIRSLEQLYLNK-NNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDI 353 (390)
Q Consensus 275 ~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L 353 (390)
......+|++|++++ |.++.+ |... +..+++|++|+|++|+|+.++. ..+.+|++|
T Consensus 172 --~~f~~~~L~~l~l~~~n~l~~i--~~~~---------------f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L 228 (350)
T 4ay9_X 172 --SAFNGTQLDELNLSDNNNLEEL--PNDV---------------FHGASGPVILDISRTRIHSLPS----YGLENLKKL 228 (350)
T ss_dssp --TSSTTEEEEEEECTTCTTCCCC--CTTT---------------TTTEECCSEEECTTSCCCCCCS----SSCTTCCEE
T ss_pred --hhccccchhHHhhccCCcccCC--CHHH---------------hccCcccchhhcCCCCcCccCh----hhhccchHh
Confidence 333557888888874 667776 4321 6778899999999999998762 336667777
Q ss_pred EccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016371 354 RLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 354 ~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
++.++.-. ..+|. +..+++|+.++++
T Consensus 229 ~~l~~~~l----~~lP~---l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 229 RARSTYNL----KKLPT---LEKLVALMEASLT 254 (350)
T ss_dssp ECTTCTTC----CCCCC---TTTCCSCCEEECS
T ss_pred hhccCCCc----CcCCC---chhCcChhhCcCC
Confidence 77666533 23554 6778888888764
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=1.5e-18 Score=155.59 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=121.9
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCC
Q 016371 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (390)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~ 206 (390)
.+..+++|+.|++++|.+...+ .+.. +++|++|++++|.++++. . +..+++|++|++++|+++...+ +.. ++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~-l~~L~~L~L~~N~i~~~~---~-l~~l~~L~~L~L~~N~l~~l~~-~~~-~~ 107 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQF-FTNLKELHLSHNQISDLS---P-LKDLTKLEELSVNRNRLKNLNG-IPS-AC 107 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGG-CTTCCEEECCSSCCCCCG---G-GTTCSSCCEEECCSSCCSCCTT-CCC-SS
T ss_pred chhhcCcCcEEECcCCCcccch-HHhh-CCCCCEEECCCCccCCCh---h-hccCCCCCEEECCCCccCCcCc-ccc-Cc
Confidence 3567899999999999999876 4544 599999999999999743 3 8899999999999999987543 333 88
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCe
Q 016371 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (390)
Q Consensus 207 L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 286 (390)
|++|++++|.++. ++. +..+++|++|++++|.+++.+ .+..+++|+.|+|++|.+++. ..+..+++|+.
T Consensus 108 L~~L~L~~N~l~~--~~~-l~~l~~L~~L~Ls~N~i~~~~-----~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~ 176 (263)
T 1xeu_A 108 LSRLFLDNNELRD--TDS-LIHLKNLEILSIRNNKLKSIV-----MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNW 176 (263)
T ss_dssp CCEEECCSSCCSB--SGG-GTTCTTCCEEECTTSCCCBCG-----GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCE
T ss_pred ccEEEccCCccCC--Chh-hcCcccccEEECCCCcCCCCh-----HHccCCCCCEEECCCCcCcch---HHhccCCCCCE
Confidence 9999999998874 333 477888888888888888763 367778888888888888876 34677888888
Q ss_pred EecCCCccccc
Q 016371 287 LYLNKNNLNRI 297 (390)
Q Consensus 287 L~L~~n~l~~~ 297 (390)
|++++|.++..
T Consensus 177 L~l~~N~~~~~ 187 (263)
T 1xeu_A 177 IDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEECC
T ss_pred EeCCCCcccCC
Confidence 88888888765
No 126
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=3e-18 Score=148.03 Aligned_cols=153 Identities=22% Similarity=0.218 Sum_probs=107.6
Q ss_pred cccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC-CCCCCCccE
Q 016371 131 FEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LPQLKSIRI 209 (390)
Q Consensus 131 l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~l~~L~~ 209 (390)
.++|++|++++|.+...++.....+++|++|++++|.+..+ .+..+..+++|++|++++|+++..++. +..+++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL--PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc--ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 46899999999999988775555569999999999999863 234567899999999999999876653 567777777
Q ss_pred EEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEec
Q 016371 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYL 289 (390)
Q Consensus 210 L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 289 (390)
|++++|.++. ..+..+..+++|++|++++|.+++.+.. .+..+++|+.|++++|.+.. .+++|+.|++
T Consensus 105 L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~ 172 (208)
T 2o6s_A 105 LALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSE 172 (208)
T ss_dssp EECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCCBCC--------CTTTTHHHHH
T ss_pred EEcCCCcCcc-cCHhHhccCCcCCEEECCCCccceeCHH---HhccCCCccEEEecCCCeec--------CCCCHHHHHH
Confidence 7777777663 2222335566667777766666655433 35556666666666664432 3456666666
Q ss_pred CCCccccc
Q 016371 290 NKNNLNRI 297 (390)
Q Consensus 290 ~~n~l~~~ 297 (390)
+.|.+++.
T Consensus 173 ~~n~~~g~ 180 (208)
T 2o6s_A 173 WINKHSGV 180 (208)
T ss_dssp HHHHCTTT
T ss_pred HHHhCCce
Confidence 66666654
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=2.2e-18 Score=161.14 Aligned_cols=216 Identities=17% Similarity=0.153 Sum_probs=163.6
Q ss_pred cEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHH-HHHhcCCCCCEEEccCCCCCCccC--CCCCCCCccE-E
Q 016371 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIG-AFGEQLPALAVLNLSNNLMSKEVT--GLPQLKSIRI-L 210 (390)
Q Consensus 135 ~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~-~~~~~l~~L~~L~ls~n~l~~~~~--~~~~l~~L~~-L 210 (390)
+.+++++++++.++..+ .+++++|+|++|.|+. +| ..+.++++|++|+|++|++.+.++ .|..+++++. +
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSE---ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCC---cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 56888999999887654 3789999999999985 44 457899999999999999876554 4678888775 5
Q ss_pred EeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCC-CCCCCchhhhhcCCC-CCcCeEe
Q 016371 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLED-NCIAEWSEILKLCQI-RSLEQLY 288 (390)
Q Consensus 211 ~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~l-~~L~~L~ 288 (390)
.+..|++.. ..+..+..+++|++|++++|.++..+.. .+.....+..|++.+ +.+...+. ..+..+ ..++.|+
T Consensus 86 ~~~~N~l~~-l~~~~f~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~l~~l~l~~~~~i~~l~~-~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 86 IEKANNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDV---HKIHSLQKVLLDIQDNINIHTIER-NSFVGLSFESVILW 160 (350)
T ss_dssp EEEETTCCE-ECTTSBCCCTTCCEEEEEEECCSSCCCC---TTCCBSSCEEEEEESCTTCCEECT-TSSTTSBSSCEEEE
T ss_pred cccCCcccc-cCchhhhhccccccccccccccccCCch---hhcccchhhhhhhccccccccccc-cchhhcchhhhhhc
Confidence 666788874 2345568899999999999999887654 344556788899866 56766554 445554 4699999
Q ss_pred cCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCC-CCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcc
Q 016371 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGN-NMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGG 367 (390)
Q Consensus 289 L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 367 (390)
|++|.|+.+ +.. .....+|++|++++ |.++.++. +.+..+++|+.|++++|.|+.
T Consensus 161 L~~N~i~~i--~~~----------------~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~l~~----- 216 (350)
T 4ay9_X 161 LNKNGIQEI--HNS----------------AFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIHS----- 216 (350)
T ss_dssp CCSSCCCEE--CTT----------------SSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSCCCC-----
T ss_pred cccccccCC--Chh----------------hccccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCCcCc-----
Confidence 999999987 443 33557899999985 68888753 578899999999999999985
Q ss_pred hhhhhhhhhcCCceEecCc
Q 016371 368 ISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 368 ~~~~~~i~~l~~L~~Ln~s 386 (390)
+|.. .+..+++|+.++..
T Consensus 217 lp~~-~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 217 LPSY-GLENLKKLRARSTY 234 (350)
T ss_dssp CCSS-SCTTCCEEECTTCT
T ss_pred cChh-hhccchHhhhccCC
Confidence 4432 25566666665544
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2.1e-18 Score=161.93 Aligned_cols=180 Identities=22% Similarity=0.309 Sum_probs=123.7
Q ss_pred cEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCC-CC-CCCCccEEEeecccCCHHHHHHHHhcCCcccEEe
Q 016371 159 KELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LP-QLKSIRILVLNCTGVNWMQVEILKHSLPALEELH 236 (390)
Q Consensus 159 ~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~-~~-~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~ 236 (390)
+.++++++.+.. +|..+ .+.++.|++++|+++...+. +. .+++|++|+|++|.++. ..+..+..+++|++|+
T Consensus 21 ~~l~c~~~~l~~---iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPN---VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCSS---CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCc---cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEE
Confidence 466666666663 33221 23467777777777665553 44 67777777777777764 2223346778888888
Q ss_pred ccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccc
Q 016371 237 LMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHE 316 (390)
Q Consensus 237 L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~ 316 (390)
|++|.++.+.+. .+..+++|+.|+|++|.++...+ ..+..+++|++|+|++|.|+.+ |... +
T Consensus 95 Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l--~~~~------------~ 156 (361)
T 2xot_A 95 LSSNHLHTLDEF---LFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRF--PVEL------------I 156 (361)
T ss_dssp CCSSCCCEECTT---TTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSC--CGGG------------T
T ss_pred CCCCcCCcCCHH---HhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCee--CHHH------------h
Confidence 888888777654 57778888888888888887654 5677888899999999888876 3321 0
Q ss_pred cCCCCCCCCCEEeCCCCCCCCchhhhhccCCCC--CcEEEccCCCCCCC
Q 016371 317 ESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPK--LMDIRLSENPVSDP 363 (390)
Q Consensus 317 ~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~--L~~L~l~~n~l~~~ 363 (390)
.+...+++|+.|+|++|+|+.++ ...+..++. |+.|+|++||+.-+
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLP-LTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCC-HHHHHHSCHHHHTTEECCSSCEECC
T ss_pred cCcccCCcCCEEECCCCCCCccC-HHHhhhccHhhcceEEecCCCccCC
Confidence 00146788999999999998875 356666776 47899999988743
No 129
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=1e-18 Score=174.69 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=14.0
Q ss_pred hHHHHHHhccccccEeecCCccc
Q 016371 122 DKIQDKFSKFEELTSAALPYLGV 144 (390)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~~i 144 (390)
+.++..+..+++|+.|++++|.+
T Consensus 210 ~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 210 KDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHhhCCCCcEEeccCccH
Confidence 44555556666666666666654
No 130
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=5.1e-19 Score=176.91 Aligned_cols=240 Identities=13% Similarity=0.116 Sum_probs=163.7
Q ss_pred ChhHHHHHHhccccccEeecCCcccCCCCc-chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccC-------
Q 016371 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSN------- 191 (390)
Q Consensus 120 g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~------- 191 (390)
+...++..+..+++|++|++++|.++.... .+...+++|+.|+++ +.+.+ ..++.....+++|++|++++
T Consensus 281 ~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~ 358 (592)
T 3ogk_B 281 GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGM 358 (592)
T ss_dssp CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCcccccc
Confidence 345566677788889999999888654433 334557899999988 44443 35666677889999999983
Q ss_pred ----CCCCCccC-C-CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEecc----CCCccccCCC--CCCccCCCCCc
Q 016371 192 ----NLMSKEVT-G-LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLM----GNSISEITPV--SSPIVQGFDNL 259 (390)
Q Consensus 192 ----n~l~~~~~-~-~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~----~n~l~~~~~~--~~~~~~~l~~L 259 (390)
+.++.... . ...+++|++|+++.+.++...+..+...+++|++|+++ .|.+++.+.. +...+..+++|
T Consensus 359 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 359 EDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp SSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred ccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 44543211 1 23578899999988888887777776678999999996 5556553210 11124567899
Q ss_pred cEEEcCCCC--CCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCC
Q 016371 260 QLLNLEDNC--IAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIED 337 (390)
Q Consensus 260 ~~L~L~~n~--l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~ 337 (390)
+.|+++.|. +++.........+++|++|++++|.+++...+.. +..+++|++|+|++|.|++
T Consensus 439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----------------~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF----------------SRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH----------------HTCCTTCCEEEEESCCCBH
T ss_pred CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH----------------HhcCcccCeeeccCCCCcH
Confidence 999997654 5554332222358899999999999887543332 4567999999999999876
Q ss_pred chhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceE
Q 016371 338 LASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKI 382 (390)
Q Consensus 338 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~ 382 (390)
.........+++|++|+|++|++++.....+ ...+|.+++
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l-----~~~~p~l~~ 542 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYRASMTGQDLM-----QMARPYWNI 542 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCBCCTTCTTGG-----GGCCTTEEE
T ss_pred HHHHHHHHhcCccCeeECcCCcCCHHHHHHH-----HHhCCCcEE
Confidence 4333344578999999999999886432222 345666544
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=2e-17 Score=163.25 Aligned_cols=174 Identities=21% Similarity=0.216 Sum_probs=141.7
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEE
Q 016371 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (390)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L 235 (390)
.+|+.|+|++|.+++ +|..+ .++|++|++++|.++..+ ..+++|++|++++|.++. ++. +.. +|++|
T Consensus 59 ~~L~~L~Ls~n~L~~---lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS---LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST--LPE-LPA--SLKHL 125 (571)
T ss_dssp TTCSEEECCSSCCSC---CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEE
T ss_pred CCccEEEeCCCCCCc---cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC--cch-hhc--CCCEE
Confidence 489999999999986 44433 478999999999998554 567999999999999985 443 222 99999
Q ss_pred eccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhccccc
Q 016371 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESH 315 (390)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 315 (390)
++++|.+++++. .+++|+.|+|++|.++..+. .+++|++|+|++|.|+.+ |..
T Consensus 126 ~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~l--p~l------------- 178 (571)
T 3cvr_A 126 DVDNNQLTMLPE-------LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFL--PEL------------- 178 (571)
T ss_dssp ECCSSCCSCCCC-------CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCC--CCC-------------
T ss_pred ECCCCcCCCCCC-------cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCc--chh-------------
Confidence 999999998542 57899999999999998653 578999999999999986 442
Q ss_pred ccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCC-------cEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCcc
Q 016371 316 EESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKL-------MDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 316 ~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
. ++|+.|+|++|+|+.++. +.. +| +.|+|++|.|+. +|.. +..+++|+.|+++.
T Consensus 179 ----~--~~L~~L~Ls~N~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~-----lp~~--l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 179 ----P--ESLEALDVSTNLLESLPA---VPV--RNHHSEETEIFFRCRENRITH-----IPEN--ILSLDPTCTIILED 239 (571)
T ss_dssp ----C--TTCCEEECCSSCCSSCCC---CC----------CCEEEECCSSCCCC-----CCGG--GGGSCTTEEEECCS
T ss_pred ----h--CCCCEEECcCCCCCchhh---HHH--hhhcccccceEEecCCCccee-----cCHH--HhcCCCCCEEEeeC
Confidence 2 899999999999998763 432 66 999999999984 7776 67799999999874
No 132
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3.1e-17 Score=140.49 Aligned_cols=154 Identities=18% Similarity=0.289 Sum_probs=126.6
Q ss_pred hccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCc-cCCCCCCCCc
Q 016371 129 SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE-VTGLPQLKSI 207 (390)
Q Consensus 129 ~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~l~~L 207 (390)
..+++|+.|++++|.+...+ .+.. +++|++|++++|.+..+ ..+..+++|++|++++|.++.. +..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~-l~~L~~L~l~~n~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEY-AHNIKDLTINNIHATNY----NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGG-CTTCSEEEEESCCCSCC----GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccChH-HHhc-CCCCCEEEccCCCCCcc----hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 45678999999999999766 4544 59999999999988764 2577899999999999999874 4478899999
Q ss_pred cEEEeecccCCHHHHHHHHhcCCcccEEeccCCC-ccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCe
Q 016371 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNS-ISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (390)
Q Consensus 208 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 286 (390)
++|++++|.++.. .+..+..+++|++|++++|. ++..+ .+..+++|+.|++++|.+++.+ .+..+++|++
T Consensus 115 ~~L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~~-----~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~ 185 (197)
T 4ezg_A 115 TLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIM-----PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQ 185 (197)
T ss_dssp CEEECCSSBCBGG-GHHHHTTCSSCCEEECCSCTBCCCCG-----GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCE
T ss_pred CEEEecCCccCcH-hHHHHhhCCCCCEEEccCCCCccccH-----hhcCCCCCCEEECCCCCCcChH---HhccCCCCCE
Confidence 9999999999863 34555899999999999998 76653 4788999999999999999865 4678899999
Q ss_pred EecCCCccccc
Q 016371 287 LYLNKNNLNRI 297 (390)
Q Consensus 287 L~L~~n~l~~~ 297 (390)
|++++|+|.+.
T Consensus 186 L~l~~N~i~~~ 196 (197)
T 4ezg_A 186 LYAFSQTIGGK 196 (197)
T ss_dssp EEECBC-----
T ss_pred EEeeCcccCCc
Confidence 99999998753
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=2.5e-19 Score=177.54 Aligned_cols=127 Identities=22% Similarity=0.275 Sum_probs=106.1
Q ss_pred CcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhh
Q 016371 230 PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELV 309 (390)
Q Consensus 230 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 309 (390)
..|+.|++++|.+++++ .+..+++|+.|+|++|.++..+ ..++.+++|+.|+|++|.|+++ | .
T Consensus 441 ~~L~~L~Ls~n~l~~lp-----~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~Ls~N~l~~l--p-~------- 503 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLC-----HLEQLLLVTHLDLSHNRLRALP--PALAALRCLEVLQASDNALENV--D-G------- 503 (567)
T ss_dssp TTCSEEECTTSCCSSCC-----CGGGGTTCCEEECCSSCCCCCC--GGGGGCTTCCEEECCSSCCCCC--G-G-------
T ss_pred cCceEEEecCCCCCCCc-----CccccccCcEeecCcccccccc--hhhhcCCCCCEEECCCCCCCCC--c-c-------
Confidence 36999999999999863 2788999999999999999776 4688999999999999999986 5 3
Q ss_pred hcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecC
Q 016371 310 SAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 385 (390)
Q Consensus 310 ~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 385 (390)
+..+++|++|+|++|+|++...+..+..+++|+.|+|++|+++.... ... .++..+|+|++||+
T Consensus 504 ---------l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~--~l~~~lp~L~~L~l 567 (567)
T 1dce_A 504 ---------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG-IQE--RLAEMLPSVSSILT 567 (567)
T ss_dssp ---------GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS-CTT--HHHHHCTTCSEEEC
T ss_pred ---------cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc-HHH--HHHHHCcccCccCC
Confidence 67899999999999999997324789999999999999999985321 111 23677999999974
No 134
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=4.3e-17 Score=142.05 Aligned_cols=152 Identities=22% Similarity=0.260 Sum_probs=101.9
Q ss_pred cEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEec
Q 016371 159 KELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHL 237 (390)
Q Consensus 159 ~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L 237 (390)
+.++++++.++. +|..+ .++|+.|++++|+++...+ .+..+++|++|+|++|.++. ..+..+..+++|++|+|
T Consensus 14 ~~v~c~~~~l~~---iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRGKGLTE---IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTTSCCSS---CCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE-ECTTTTTTCSSCCEEEC
T ss_pred CEEEcCCCCcCc---CCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC-cCHHHhhCCcCCCEEEC
Confidence 455555555553 23221 1456666666666665544 45666667777777766653 22334466777888888
Q ss_pred cCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhccccccc
Q 016371 238 MGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEE 317 (390)
Q Consensus 238 ~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~ 317 (390)
++|.++.++.. .+..+++|+.|+|++|.++...+ ..+..+++|++|+|++|.|+.+. +..
T Consensus 88 s~N~l~~l~~~---~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~--------------- 147 (220)
T 2v9t_B 88 YGNKITELPKS---LFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIA-KGT--------------- 147 (220)
T ss_dssp CSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC-TTT---------------
T ss_pred CCCcCCccCHh---HccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEEC-HHH---------------
Confidence 88887766554 46777888888888888887765 56777888888888888888773 222
Q ss_pred CCCCCCCCCEEeCCCCCCCC
Q 016371 318 SYLPFQNLCCLLLGNNMIED 337 (390)
Q Consensus 318 ~~~~~~~L~~L~L~~N~i~~ 337 (390)
+..+++|++|+|++|.+.-
T Consensus 148 -~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 148 -FSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp -TTTCTTCCEEECCSSCEEC
T ss_pred -HhCCCCCCEEEeCCCCcCC
Confidence 5667888888888888764
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.1e-16 Score=150.14 Aligned_cols=172 Identities=22% Similarity=0.272 Sum_probs=135.9
Q ss_pred CCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHh-cCCcccEEeccCCCccccCCCCCCccCCCCCccEE
Q 016371 184 LAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKH-SLPALEELHLMGNSISEITPVSSPIVQGFDNLQLL 262 (390)
Q Consensus 184 L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 262 (390)
-+.++++++.++..+..+. ..++.|+|++|.++. ..+..+. .+++|++|+|++|.++.+.+. .+..+++|+.|
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~---~~~~l~~L~~L 93 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSE---AFVPVPNLRYL 93 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTT---TTTTCTTCCEE
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChh---hccCCCCCCEE
Confidence 3689999999987665554 468999999999985 2233334 889999999999999988754 68899999999
Q ss_pred EcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhh
Q 016371 263 NLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASID 342 (390)
Q Consensus 263 ~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~ 342 (390)
+|++|.++..+. ..+..+++|+.|+|++|.|+.+. +.. +..+++|++|+|++|+|+.++. .
T Consensus 94 ~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~l~~-~ 154 (361)
T 2xot_A 94 DLSSNHLHTLDE-FLFSDLQALEVLLLYNNHIVVVD-RNA----------------FEDMAQLQKLYLSQNQISRFPV-E 154 (361)
T ss_dssp ECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEEC-TTT----------------TTTCTTCCEEECCSSCCCSCCG-G
T ss_pred ECCCCcCCcCCH-HHhCCCcCCCEEECCCCcccEEC-HHH----------------hCCcccCCEEECCCCcCCeeCH-H
Confidence 999999998765 56889999999999999999874 333 6788999999999999999753 3
Q ss_pred hc---cCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCc--eEecCc
Q 016371 343 SL---DSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKI--KILNGS 386 (390)
Q Consensus 343 ~l---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L--~~Ln~s 386 (390)
.+ ..+++|+.|+|++|.|.. ++.. .++.++.+ +.|+++
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~-----l~~~-~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKK-----LPLT-DLQKLPAWVKNGLYLH 197 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCC-----CCHH-HHHHSCHHHHTTEECC
T ss_pred HhcCcccCCcCCEEECCCCCCCc-----cCHH-HhhhccHhhcceEEec
Confidence 44 579999999999999985 3321 25666653 555554
No 136
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=9.5e-17 Score=139.89 Aligned_cols=154 Identities=21% Similarity=0.221 Sum_probs=129.9
Q ss_pred cEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEee
Q 016371 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLN 213 (390)
Q Consensus 135 ~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~ 213 (390)
+.++++++.++.++..+. +.++.|+|++|.++.+. .+..+..+++|++|++++|+++...+ .+..+++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~~---~~~~~L~L~~N~l~~~~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP---QYTAELRLNNNEFTVLE-ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCEEC-CCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCCC---CCCCEEEcCCCcCCccC-chhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 578999999998876443 56799999999998631 11347899999999999999998776 68899999999999
Q ss_pred cccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCc
Q 016371 214 CTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN 293 (390)
Q Consensus 214 ~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 293 (390)
+|.++. ..+..+..+++|++|+|++|.+++..+. .+..+++|+.|+|++|.+++..+ ..+..+++|+.|+|++|.
T Consensus 90 ~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGND---SFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTT---SSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCC
T ss_pred CCccCc-cCHhHhcCCcCCCEEECCCCcCCeECHh---HcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcC
Confidence 999975 3344458899999999999999988654 68889999999999999999865 678899999999999999
Q ss_pred cccc
Q 016371 294 LNRI 297 (390)
Q Consensus 294 l~~~ 297 (390)
++..
T Consensus 165 l~c~ 168 (220)
T 2v70_A 165 FNCN 168 (220)
T ss_dssp EECS
T ss_pred CcCC
Confidence 8754
No 137
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=1.3e-16 Score=139.95 Aligned_cols=153 Identities=21% Similarity=0.170 Sum_probs=123.5
Q ss_pred ccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEe
Q 016371 134 LTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVL 212 (390)
Q Consensus 134 L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L 212 (390)
.+.++++++.+..++..+. ++|++|+|++|.++. ..+..+..+++|++|++++|+++...+ .+..+++|++|+|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP---TNAQILYLHDNQITK--LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcCccCCCCC---CCCCEEEcCCCccCc--cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 4567888888888776443 789999999999987 335667889999999999999987765 3678899999999
Q ss_pred ecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCC
Q 016371 213 NCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKN 292 (390)
Q Consensus 213 ~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n 292 (390)
++|.++. ..+..+..+++|++|++++|.++.++. .+..+++|+.|+|++|.++..+. ..+..+++|+.|+|++|
T Consensus 96 s~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 96 GTNQLTV-LPSAVFDRLVHLKELFMCCNKLTELPR----GIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCCCSCCT----TGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred CCCcCCc-cChhHhCcchhhCeEeccCCcccccCc----ccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCC
Confidence 9998874 233445788999999999999986643 46788999999999999998775 56788999999999999
Q ss_pred ccccc
Q 016371 293 NLNRI 297 (390)
Q Consensus 293 ~l~~~ 297 (390)
.+...
T Consensus 170 ~~~c~ 174 (229)
T 3e6j_A 170 PWDCE 174 (229)
T ss_dssp CBCTT
T ss_pred CccCC
Confidence 88754
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=2.6e-17 Score=164.58 Aligned_cols=259 Identities=18% Similarity=0.189 Sum_probs=154.4
Q ss_pred HHHHHhccccccEeecCCcccCCCCc-chhhhcCcccEEECCCC-cCCChHHHHHHHhcCCCCCEEEccCCCCCCccC--
Q 016371 124 IQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGN-LLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-- 199 (390)
Q Consensus 124 l~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n-~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-- 199 (390)
++.....+++|++|+++++.++.... .+...+++|++|+|++| .+.. ..++..+..+++|++|++++|.++....
T Consensus 97 l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 97 IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST-DGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH-HHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred HHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH-HHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 44455677888888888887665444 44434688888888888 4442 3466667788888888888887654322
Q ss_pred --C-CCCCCCccEEEeeccc--CCHHHHHHHHhcCCcccEEeccCCC-ccc-------------cC--------------
Q 016371 200 --G-LPQLKSIRILVLNCTG--VNWMQVEILKHSLPALEELHLMGNS-ISE-------------IT-------------- 246 (390)
Q Consensus 200 --~-~~~l~~L~~L~L~~~~--l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-------------~~-------------- 246 (390)
. ...+++|++|++++|. ++...+..+...+++|++|++++|. +++ ..
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 1 2366788888888875 6656666666777888888887761 110 00
Q ss_pred ----------------------C-CCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCC-
Q 016371 247 ----------------------P-VSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNN- 302 (390)
Q Consensus 247 ----------------------~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~- 302 (390)
. .++..+..+++|++|+|++|.+++......+..+++|++|++++| +++...+..
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~ 334 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA 334 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH
Confidence 0 000111245788888888888665433234567888888888877 443211110
Q ss_pred --Cchhhhhhcc---------cccccC-----C-CCCCCCCEEeCCCCCCCCchhhhhcc-CCCCCcEEEcc--C----C
Q 016371 303 --DTIHELVSAH---------ESHEES-----Y-LPFQNLCCLLLGNNMIEDLASIDSLD-SFPKLMDIRLS--E----N 358 (390)
Q Consensus 303 --~~~~~~~~~~---------~~~~~~-----~-~~~~~L~~L~L~~N~i~~~~~~~~l~-~l~~L~~L~l~--~----n 358 (390)
...++.+.+. .+..+. + ..+++|++|+++.|.+++.. +..+. .+++|++|+++ + |
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA-LITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH-HHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH-HHHHHhhCCCcceeEeecccCCCcc
Confidence 1112222210 011110 1 13677888877777777642 33443 57888888888 3 4
Q ss_pred CCCCCCC-cchhhhhhhhhcCCceEecCcc
Q 016371 359 PVSDPGR-GGISRFAIIARLGKIKILNGSE 387 (390)
Q Consensus 359 ~l~~~~~-~~~~~~~~i~~l~~L~~Ln~s~ 387 (390)
.+++... ..++. ++..+++|+.|+++.
T Consensus 414 ~l~~~~~~~~~~~--l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 414 YLTLEPLDIGFGA--IVEHCKDLRRLSLSG 441 (594)
T ss_dssp TTTCCCTHHHHHH--HHHHCTTCCEEECCS
T ss_pred cccCCchhhHHHH--HHhhCCCccEEeecC
Confidence 4543211 12222 267788888888764
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=8.6e-18 Score=168.03 Aligned_cols=228 Identities=13% Similarity=0.140 Sum_probs=116.9
Q ss_pred ccccccEeecCCcccCCCCc-chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccC---------CCCCCccC
Q 016371 130 KFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSN---------NLMSKEVT 199 (390)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~---------n~l~~~~~ 199 (390)
.+++|+.|++++|.+..... .+...+++|+.|++++| +.+ ..++.....+++|++|+++. +.++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 34455555555554332211 22223455555555554 221 23333344455555555522 22221110
Q ss_pred -CC-CCCCCccEEEeecccCCHHHHHHHHhcCCcccEEecc--C----CCccccCC--CCCCccCCCCCccEEEcCCCCC
Q 016371 200 -GL-PQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLM--G----NSISEITP--VSSPIVQGFDNLQLLNLEDNCI 269 (390)
Q Consensus 200 -~~-~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~--~----n~l~~~~~--~~~~~~~~l~~L~~L~L~~n~l 269 (390)
.+ ..+++|+.|.+..+.+++..+..+...+++|++|+++ + +.++..+. .+...+..+++|+.|+|++ .+
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 11 1356666666666666665555555566777777776 2 33332210 0001134556777777765 44
Q ss_pred CCchhhhhcCC-CCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCC
Q 016371 270 AEWSEILKLCQ-IRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFP 348 (390)
Q Consensus 270 ~~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~ 348 (390)
++... ..++. +++|+.|+|++|.+++...+.. ...+++|++|+|++|.+++......+..++
T Consensus 444 ~~~~~-~~l~~~~~~L~~L~L~~~~i~~~~~~~l----------------~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 444 TDKVF-EYIGTYAKKMEMLSVAFAGDSDLGMHHV----------------LSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp CHHHH-HHHHHHCTTCCEEEEESCCSSHHHHHHH----------------HHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred cHHHH-HHHHHhchhccEeeccCCCCcHHHHHHH----------------HhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 44332 33333 6777777777777765432111 234678888888888886543323344578
Q ss_pred CCcEEEccCCCCCCCCCcchhhhhhhhhcCCceE
Q 016371 349 KLMDIRLSENPVSDPGRGGISRFAIIARLGKIKI 382 (390)
Q Consensus 349 ~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~ 382 (390)
+|++|++++|+++. .-... +...+|+|++
T Consensus 507 ~L~~L~l~~~~~~~----~~~~~-l~~~lp~l~i 535 (594)
T 2p1m_B 507 TMRSLWMSSCSVSF----GACKL-LGQKMPKLNV 535 (594)
T ss_dssp GSSEEEEESSCCBH----HHHHH-HHHHCTTEEE
T ss_pred CCCEEeeeCCCCCH----HHHHH-HHHhCCCCEE
Confidence 88888888888742 11111 2356677654
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=5.5e-16 Score=126.35 Aligned_cols=132 Identities=20% Similarity=0.275 Sum_probs=108.5
Q ss_pred cCCcccEEeccCCCcc-ccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchh
Q 016371 228 SLPALEELHLMGNSIS-EITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIH 306 (390)
Q Consensus 228 ~l~~L~~L~L~~n~l~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 306 (390)
..++|++|++++|.++ +..+. .+..+++|+.|++++|.+++. ..++.+++|++|++++|.+++.. |..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~-~~~---- 83 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG---LTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGL-EVL---- 83 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS---CCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCT-HHH----
T ss_pred CCccCeEEEccCCcCChhHHHH---HHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchH-HHH----
Confidence 4478999999999998 33222 578889999999999999986 46788999999999999998841 332
Q ss_pred hhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhh--hhhhhhcCCceEec
Q 016371 307 ELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISR--FAIIARLGKIKILN 384 (390)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~i~~l~~L~~Ln 384 (390)
+..+++|++|++++|+|++++.+..+..+++|++|++++|++++ .+. ...++.+++|+.||
T Consensus 84 ------------~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-----~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 84 ------------AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-----LNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp ------------HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-----STTHHHHHHHHCTTCCEET
T ss_pred ------------hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-----hHHHHHHHHHHCCCccccc
Confidence 45689999999999999997666788999999999999999984 222 12489999999999
Q ss_pred Ccc
Q 016371 385 GSE 387 (390)
Q Consensus 385 ~s~ 387 (390)
++.
T Consensus 147 l~d 149 (149)
T 2je0_A 147 GYD 149 (149)
T ss_dssp TBC
T ss_pred CCC
Confidence 873
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=1.5e-15 Score=127.53 Aligned_cols=133 Identities=26% Similarity=0.364 Sum_probs=86.7
Q ss_pred cCCcccEEeccCCCccccCCCCCCccCCC-CCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchh
Q 016371 228 SLPALEELHLMGNSISEITPVSSPIVQGF-DNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIH 306 (390)
Q Consensus 228 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 306 (390)
.+++|++|++++|.++.++ . +..+ ++|+.|++++|.+++. ..++.+++|++|+|++|.|+.+ |...
T Consensus 17 ~~~~L~~L~l~~n~l~~i~-~----~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~--~~~~--- 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIE-N----LGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRI--GEGL--- 83 (176)
T ss_dssp CTTSCEEEECTTSCCCSCC-C----GGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEE--CSCH---
T ss_pred CcCCceEEEeeCCCCchhH-H----hhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccccc--Ccch---
Confidence 3456777777777776542 1 2333 3777777777777764 3466777777777777777766 3321
Q ss_pred hhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecCc
Q 016371 307 ELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 386 (390)
+..+++|++|++++|+|++++.+..+..+++|++|++++|++.... ..+..+++.+++|+.||++
T Consensus 84 ------------~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~---~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 84 ------------DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp ------------HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST---THHHHHHHHCTTCSEETTE
T ss_pred ------------hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH---hHHHHHHHHCCccceeCCC
Confidence 3556777888888887777665456777777888888888776421 1122346777788887777
Q ss_pred cc
Q 016371 387 EV 388 (390)
Q Consensus 387 ~i 388 (390)
.+
T Consensus 149 ~n 150 (176)
T 1a9n_A 149 KV 150 (176)
T ss_dssp EC
T ss_pred cC
Confidence 65
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=2.8e-17 Score=162.84 Aligned_cols=190 Identities=18% Similarity=0.117 Sum_probs=144.1
Q ss_pred EeChhHHHHHHhccccccEeecCCcc-------------cCCCCcchhhhcCcccEEE-CCCCcCCChHHHH---HHHhc
Q 016371 118 LVGKDKIQDKFSKFEELTSAALPYLG-------------VSSPGANIGTIVTNLKELD-LTGNLLSDWKDIG---AFGEQ 180 (390)
Q Consensus 118 ~~g~~~l~~~~~~l~~L~~L~L~~~~-------------i~~~~~~~~~~~~~L~~L~-Ls~n~l~~~~~i~---~~~~~ 180 (390)
...++.+|..++++++|+.|+++++. +.+..+.....+++|+.|+ ++.|.+..+..+. ..+..
T Consensus 358 ~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~ 437 (567)
T 1dce_A 358 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK 437 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccc
Confidence 33457899999999999999997764 3333333333458899998 6776655332210 01111
Q ss_pred --CCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCC
Q 016371 181 --LPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDN 258 (390)
Q Consensus 181 --l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 258 (390)
...|+.|++++|.+++.+ .+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++++ .++.+++
T Consensus 438 l~~~~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp-----~l~~l~~ 509 (567)
T 1dce_A 438 MEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-----GVANLPR 509 (567)
T ss_dssp HHHTTCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-----GGTTCSS
T ss_pred cCccCceEEEecCCCCCCCc-CccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc-----ccCCCCC
Confidence 236999999999999864 5889999999999999998 56667789999999999999999864 4788999
Q ss_pred ccEEEcCCCCCCCch-hhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeC
Q 016371 259 LQLLNLEDNCIAEWS-EILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLL 330 (390)
Q Consensus 259 L~~L~L~~n~l~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 330 (390)
|+.|+|++|.+++.. + ..++.+++|+.|+|++|.+++. |.....+ +..+++|+.|++
T Consensus 510 L~~L~Ls~N~l~~~~~p-~~l~~l~~L~~L~L~~N~l~~~--~~~~~~l------------~~~lp~L~~L~l 567 (567)
T 1dce_A 510 LQELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGNSLCQE--EGIQERL------------AEMLPSVSSILT 567 (567)
T ss_dssp CCEEECCSSCCCSSSTT-GGGGGCTTCCEEECTTSGGGGS--SSCTTHH------------HHHCTTCSEEEC
T ss_pred CcEEECCCCCCCCCCCc-HHHhcCCCCCEEEecCCcCCCC--ccHHHHH------------HHHCcccCccCC
Confidence 999999999999984 3 5788999999999999999987 4332111 234678888864
No 143
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=5.1e-16 Score=129.23 Aligned_cols=137 Identities=20% Similarity=0.275 Sum_probs=109.4
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEE
Q 016371 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (390)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L 235 (390)
++|+.|++++|.+.+ ..+|..+..+++|++|++++|.++.. ..+..+++|++|++++|.++. .++..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~-~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFG-GLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBT-TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCS-CCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCCh-hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCch-HHHHHHhhCCCCCEE
Confidence 677788888877761 13455567788888888888888766 667788899999999998875 266666789999999
Q ss_pred eccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhh--hhcCCCCCcCeEecCCCccccc
Q 016371 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI--LKLCQIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~l~~L~~L~L~~n~l~~~ 297 (390)
++++|.+++.+.. ..+..+++|+.|++++|.++..+.. ..+..+++|++|++++|.+..+
T Consensus 101 ~Ls~N~l~~~~~~--~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDISTL--EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGGG--GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcchhH--HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 9999999886421 2578899999999999999887641 3678899999999999999877
No 144
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=4.8e-16 Score=129.40 Aligned_cols=140 Identities=19% Similarity=0.177 Sum_probs=85.5
Q ss_pred cCCCCCEEEccCCCCC-CccC-CCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCC
Q 016371 180 QLPALAVLNLSNNLMS-KEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFD 257 (390)
Q Consensus 180 ~l~~L~~L~ls~n~l~-~~~~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 257 (390)
..++|++|++++|.++ +..+ .+..+++|++|++++|.++.. ..+..+++|++|++++|.+++..+. .+..++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDM---LAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCH---HHHHCT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHH---HHhhCC
Confidence 4467888888888886 3333 456677777777777776642 3345666777777777776664222 344466
Q ss_pred CccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCC
Q 016371 258 NLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIED 337 (390)
Q Consensus 258 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~ 337 (390)
+|+.|+|++|.+++.+.+..+..+++|++|++++|.++++ +..... .+..+++|++|++++|.+..
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~--~~~~~~------------~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL--NDYRES------------VFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS--TTHHHH------------HHTTCSSCCEETTEETTSCB
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch--HHHHHH------------HHHhCccCcEecCCCCChhh
Confidence 7777777777776655434566666777777777766655 220000 04456666666666666655
Q ss_pred ch
Q 016371 338 LA 339 (390)
Q Consensus 338 ~~ 339 (390)
++
T Consensus 162 ~~ 163 (168)
T 2ell_A 162 AP 163 (168)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=1.7e-17 Score=142.20 Aligned_cols=170 Identities=24% Similarity=0.367 Sum_probs=120.2
Q ss_pred HHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCC
Q 016371 176 AFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQG 255 (390)
Q Consensus 176 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 255 (390)
..+...+.++.++++.+.+.+..+.+ + .++..+..+++|++|++++|.++.++ .+..
T Consensus 12 ~~~~~~~~l~~l~l~~~~l~~~~~~l----------------~--~l~~~~~~l~~L~~L~ls~n~l~~l~-----~~~~ 68 (198)
T 1ds9_A 12 RIFEERKSVVATEAEKVELHGMIPPI----------------E--KMDATLSTLKACKHLALSTNNIEKIS-----SLSG 68 (198)
T ss_dssp HHHHHTTCCCCTTCSEEECCBCCTTC----------------C--CCHHHHHHTTTCSEEECSEEEESCCC-----CHHH
T ss_pred HHHHhcccccCcchheeEeccccCcH----------------h--hhhHHHhcCCCCCEEECCCCCCcccc-----cccc
Confidence 44566777777777777776543322 1 22334567888888888888887753 3667
Q ss_pred CCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCC
Q 016371 256 FDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMI 335 (390)
Q Consensus 256 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i 335 (390)
+++|+.|++++|.++.++. .+..+++|++|++++|.++++ |. +..+++|++|++++|+|
T Consensus 69 l~~L~~L~l~~n~l~~l~~--~~~~~~~L~~L~L~~N~l~~l--~~-----------------~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 69 MENLRILSLGRNLIKKIEN--LDAVADTLEELWISYNQIASL--SG-----------------IEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp HTTCCEEEEEEEEECSCSS--HHHHHHHCSEEEEEEEECCCH--HH-----------------HHHHHHSSEEEESEEEC
T ss_pred CCCCCEEECCCCCcccccc--hhhcCCcCCEEECcCCcCCcC--Cc-----------------cccCCCCCEEECCCCcC
Confidence 7888888888888886653 344568888999998888876 32 45668889999999999
Q ss_pred CCchhhhhccCCCCCcEEEccCCCCCCCCCc----chhhhhhhhhcCCceEecCcccC
Q 016371 336 EDLASIDSLDSFPKLMDIRLSENPVSDPGRG----GISRFAIIARLGKIKILNGSEVN 389 (390)
Q Consensus 336 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~i~~l~~L~~Ln~s~i~ 389 (390)
++++.+..+..+++|++|++++|++...... ...+..+++.+++|+.||+..|+
T Consensus 128 ~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~ 185 (198)
T 1ds9_A 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD 185 (198)
T ss_dssp CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence 8876556788889999999999988632100 11123347888999999988775
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=7.8e-15 Score=124.88 Aligned_cols=130 Identities=23% Similarity=0.322 Sum_probs=66.0
Q ss_pred CEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEc
Q 016371 185 AVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNL 264 (390)
Q Consensus 185 ~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 264 (390)
+++++++|.++..+..+.. +|++|++++|.++.......+..+++|++|+|++|.+++..+. .+..+++|+.|+|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN---AFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT---TTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh---HcCCcccCCEEEC
Confidence 4455555555433332221 4555555555444211111234555566666666665555432 4555566666666
Q ss_pred CCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCC
Q 016371 265 EDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIED 337 (390)
Q Consensus 265 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~ 337 (390)
++|.+++.++ ..+..+++|++|+|++|.|+++. |.. +..+++|++|+|++|.++.
T Consensus 86 s~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 86 GENKIKEISN-KMFLGLHQLKTLNLYDNQISCVM-PGS----------------FEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSCCCCEECS-SSSTTCTTCCEEECCSSCCCEEC-TTS----------------STTCTTCCEEECTTCCBCC
T ss_pred CCCcCCccCH-HHhcCCCCCCEEECCCCcCCeeC-HHH----------------hhcCCCCCEEEeCCCCccC
Confidence 6666655443 34555566666666666665542 222 4455566666666665553
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=1.7e-14 Score=133.44 Aligned_cols=102 Identities=14% Similarity=0.178 Sum_probs=72.0
Q ss_pred CCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCC-EEeCCCCC
Q 016371 256 FDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLC-CLLLGNNM 334 (390)
Q Consensus 256 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~N~ 334 (390)
+++|+.|+|++|.++..+. ..+..+++|++|+|.+| ++.+. ..+ |..|++|+ .|++.+ .
T Consensus 225 ~~~L~~l~L~~n~i~~I~~-~aF~~~~~L~~l~l~~n-i~~I~--~~a---------------F~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD-FTFAQKKYLLKIKLPHN-LKTIG--QRV---------------FSNCGRLAGTLELPA-S 284 (329)
T ss_dssp CTTCCEEECTTBCCCEECT-TTTTTCTTCCEEECCTT-CCEEC--TTT---------------TTTCTTCCEEEEECT-T
T ss_pred cCCCeEEECCCCCcceecH-hhhhCCCCCCEEECCcc-cceeh--HHH---------------hhCChhccEEEEEcc-c
Confidence 6778888888887777665 66777888888888877 66663 221 67778888 888877 6
Q ss_pred CCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEec
Q 016371 335 IEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILN 384 (390)
Q Consensus 335 i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln 384 (390)
++.++ ...|..|++|++|++++|.+.. ++.. ++..+++|+.|.
T Consensus 285 l~~I~-~~aF~~c~~L~~l~l~~n~i~~-----I~~~-aF~~~~~L~~ly 327 (329)
T 3sb4_A 285 VTAIE-FGAFMGCDNLRYVLATGDKITT-----LGDE-LFGNGVPSKLIY 327 (329)
T ss_dssp CCEEC-TTTTTTCTTEEEEEECSSCCCE-----ECTT-TTCTTCCCCEEE
T ss_pred ceEEc-hhhhhCCccCCEEEeCCCccCc-----cchh-hhcCCcchhhhc
Confidence 66553 2567778888888888887764 3322 366777777764
No 148
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=2.6e-15 Score=122.33 Aligned_cols=131 Identities=21% Similarity=0.311 Sum_probs=91.6
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEE
Q 016371 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (390)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L 235 (390)
++|+.|++++|.+.+ ..+|..+..+++|++|++++|.++.. +.+..+++|++|++++|.++. .++..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG-GLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBT-TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCS-CTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCCh-hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccc-hHHHHhhhCCCCCEE
Confidence 566777777776651 13445556677777777777777665 556777788888888887774 256666778888888
Q ss_pred eccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhh--hhcCCCCCcCeEecCC
Q 016371 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI--LKLCQIRSLEQLYLNK 291 (390)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~l~~L~~L~L~~ 291 (390)
++++|.+++.+. +..+..+++|+.|++++|.+++.+.. ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLST--IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHH--HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHH--HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888877531 02467788888888888888776542 3566788888888763
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=1.1e-14 Score=123.97 Aligned_cols=132 Identities=19% Similarity=0.212 Sum_probs=109.7
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCe
Q 016371 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (390)
Q Consensus 207 L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 286 (390)
-++++++++.++ .++.. -.++|++|++++|.++.+.+. ..+..+++|+.|+|++|.+++..+ ..+..+++|++
T Consensus 10 ~~~l~~s~~~l~--~ip~~--~~~~l~~L~l~~n~i~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~ 82 (192)
T 1w8a_A 10 GTTVDCTGRGLK--EIPRD--IPLHTTELLLNDNELGRISSD--GLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQE 82 (192)
T ss_dssp TTEEECTTSCCS--SCCSC--CCTTCSEEECCSCCCCSBCCS--CSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCE
T ss_pred CCEEEcCCCCcC--cCccC--CCCCCCEEECCCCcCCccCCc--cccccCCCCCEEECCCCCCCCcCH-hHcCCcccCCE
Confidence 378999999886 34432 234899999999999887642 247889999999999999999865 67889999999
Q ss_pred EecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCC
Q 016371 287 LYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 363 (390)
Q Consensus 287 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 363 (390)
|+|++|.|+++. +.. +..+++|++|+|++|+|++.. +..+..+++|++|++++|++..+
T Consensus 83 L~Ls~N~l~~~~-~~~----------------~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 83 LQLGENKIKEIS-NKM----------------FLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EECCSCCCCEEC-SSS----------------STTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBCCS
T ss_pred EECCCCcCCccC-HHH----------------hcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCccCc
Confidence 999999999884 332 677899999999999999863 46788999999999999999854
No 150
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=4.2e-14 Score=120.42 Aligned_cols=128 Identities=21% Similarity=0.251 Sum_probs=99.0
Q ss_pred CEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEc
Q 016371 185 AVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNL 264 (390)
Q Consensus 185 ~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 264 (390)
+.+++++|.++..+..+. ++|++|++++|.++ .++..+..+++|++|++++|.++.+.+. .+..+++|+.|+|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~---~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQ---SFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEEC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHh---HccCCCCCCEEEC
Confidence 467777777765544433 57888888888776 3445567888999999999998887654 6788899999999
Q ss_pred CCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCC
Q 016371 265 EDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIED 337 (390)
Q Consensus 265 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~ 337 (390)
++|.++..++ ..+..+++|+.|+|++|.|+.+ +... +..+++|+.|+|++|.+.-
T Consensus 86 s~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~--~~~~---------------~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 86 SYNRLRCIPP-RTFDGLKSLRLLSLHGNDISVV--PEGA---------------FNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCCBCCT-TTTTTCTTCCEEECCSSCCCBC--CTTT---------------TTTCTTCCEEECCSSCEEC
T ss_pred CCCccCEeCH-HHhCCCCCCCEEECCCCCCCee--Chhh---------------hhcCccccEEEeCCCCeec
Confidence 9999988775 5678889999999999999877 3321 5678899999999998864
No 151
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=2.8e-15 Score=152.90 Aligned_cols=213 Identities=14% Similarity=0.070 Sum_probs=96.8
Q ss_pred ccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChH-------HHHHHHhcCCCCCEEEccCCCCCCccCCCCCC
Q 016371 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWK-------DIGAFGEQLPALAVLNLSNNLMSKEVTGLPQL 204 (390)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-------~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l 204 (390)
+.++.++|.++.+...+. ..|+.++|+.+.+.... ..+..+..+++|+.|+|++|.+...++.+..+
T Consensus 173 ~~~~~l~L~~n~~~~~~~------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l 246 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKY 246 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGC
T ss_pred CccceEEeeCCCCCcchh------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCC
Confidence 345666777776665433 22333344444333211 34566778888888888888887665566678
Q ss_pred CCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCc
Q 016371 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
++|++|+|++|.++ .++..+..+++|++|+|++|.++.++. .+..+++|+.|+|++|.|+.++. .++.+++|
T Consensus 247 ~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~lp~--~~~~l~~L 318 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPA----ELGSCFQLKYFYFFDNMVTTLPW--EFGNLCNL 318 (727)
T ss_dssp CSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCS----SGGGGTTCSEEECCSSCCCCCCS--STTSCTTC
T ss_pred CCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccCh----hhcCCCCCCEEECCCCCCCccCh--hhhcCCCc
Confidence 88888888888887 455555788888888888888885532 47778888888888888887653 47788888
Q ss_pred CeEecCCCccccccCCCCCchhh----hhhcccccccCCCCCCCCCEEeCCCC--------CCCCchhhhhccCCCCCcE
Q 016371 285 EQLYLNKNNLNRIYYPNNDTIHE----LVSAHESHEESYLPFQNLCCLLLGNN--------MIEDLASIDSLDSFPKLMD 352 (390)
Q Consensus 285 ~~L~L~~n~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~~L~L~~N--------~i~~~~~~~~l~~l~~L~~ 352 (390)
+.|+|++|.|++.. |..+.... .+.+..|...+. ....|+.|+++.| .+.... ...+..+..+..
T Consensus 319 ~~L~L~~N~l~~~~-p~~~~~~~~~~~~l~l~~N~l~~~-~p~~l~~l~l~~n~~~~~~~~~l~~~~-~~~~~~l~~~~~ 395 (727)
T 4b8c_D 319 QFLGVEGNPLEKQF-LKILTEKSVTGLIFYLRDNRPEIP-LPHERRFIEINTDGEPQREYDSLQQST-EHLATDLAKRTF 395 (727)
T ss_dssp CCEECTTSCCCSHH-HHHHHHHHHHHHHHHHHHCCCCCC-CCCC------------------------------------
T ss_pred cEEeCCCCccCCCC-hHHHhhcchhhhHHhhccCcccCc-CccccceeEeecccccccccCCccccc-cchhhcccccce
Confidence 88888888887653 33221111 133444444433 2467888888888 222211 012334555666
Q ss_pred EEccCCCCC
Q 016371 353 IRLSENPVS 361 (390)
Q Consensus 353 L~l~~n~l~ 361 (390)
..+++|-+.
T Consensus 396 ~~ls~Nil~ 404 (727)
T 4b8c_D 396 TVLSYNTLC 404 (727)
T ss_dssp ------CCC
T ss_pred eeeeccccc
Confidence 777788775
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=8.9e-14 Score=116.62 Aligned_cols=111 Identities=22% Similarity=0.311 Sum_probs=72.0
Q ss_pred CcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhh
Q 016371 230 PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELV 309 (390)
Q Consensus 230 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 309 (390)
++|++|++++|.+++.++. .+..+++|+.|++++|.++..++ ..+..+++|++|+|++|.|+.+. +..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-~~~------- 95 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHG---VFDKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENKLQSLP-NGV------- 95 (177)
T ss_dssp TTCSEEECCSSCCCCCCTT---TTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTT-------
T ss_pred CCCcEEEeCCCcccEeCHH---HhcCcccccEEECCCCcceEeCh-hHccCCCccCEEECCCCCccccC-HHH-------
Confidence 4566666666666655433 45666777777777777766554 44566777777777777777652 221
Q ss_pred hcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016371 310 SAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 310 ~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+..+++|++|++++|+|++++. ..+..+++|++|++++|++..
T Consensus 96 ---------~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 96 ---------FDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ---------TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCC
T ss_pred ---------hhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeec
Confidence 4556777777777777776542 345667777777777777763
No 153
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=3.6e-15 Score=125.09 Aligned_cols=109 Identities=15% Similarity=0.171 Sum_probs=53.2
Q ss_pred cccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhh
Q 016371 231 ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVS 310 (390)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 310 (390)
+|++|++++|.+++. . .+..+++|+.|+|++|.++..++ ..+..+++|++|+|++|.|+.+.....
T Consensus 43 ~L~~L~Ls~N~l~~~-~----~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~-------- 108 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-D----GFPLLRRLKTLLVNNNRICRIGE-GLDQALPDLTELILTNNSLVELGDLDP-------- 108 (176)
T ss_dssp CCSEEECCSSCCCEE-C----CCCCCSSCCEEECCSSCCCEECS-CHHHHCTTCCEEECCSCCCCCGGGGGG--------
T ss_pred CCCEEECCCCCCCcc-c----ccccCCCCCEEECCCCcccccCc-chhhcCCCCCEEECCCCcCCcchhhHh--------
Confidence 555555555555443 1 24445555555555555554432 222445555555555555554411001
Q ss_pred cccccccCCCCCCCCCEEeCCCCCCCCchhh--hhccCCCCCcEEEccCCCCC
Q 016371 311 AHESHEESYLPFQNLCCLLLGNNMIEDLASI--DSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~--~~l~~l~~L~~L~l~~n~l~ 361 (390)
+..+++|++|++++|.++..+.. ..+..+++|+.|++++|++.
T Consensus 109 --------l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 109 --------LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp --------GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred --------hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 34455555666665555543310 12445666666666666543
No 154
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=3.1e-14 Score=121.25 Aligned_cols=131 Identities=21% Similarity=0.278 Sum_probs=108.8
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCe
Q 016371 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (390)
Q Consensus 207 L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 286 (390)
-++++++++.++ .++.. -.++|++|++++|.++.++. .+..+++|+.|+|++|.++..++ ..+..+++|++
T Consensus 12 ~~~l~~~~~~l~--~ip~~--~~~~l~~L~L~~n~i~~ip~----~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~ 82 (193)
T 2wfh_A 12 DTVVRCSNKGLK--VLPKG--IPRDVTELYLDGNQFTLVPK----ELSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLT 82 (193)
T ss_dssp TTEEECTTSCCS--SCCSC--CCTTCCEEECCSSCCCSCCG----GGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred CCEEEcCCCCCC--cCCCC--CCCCCCEEECCCCcCchhHH----HhhcccCCCEEECCCCcCCEeCH-hHccCCCCCCE
Confidence 367888888876 33321 24689999999999986652 58889999999999999998775 67889999999
Q ss_pred EecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCC
Q 016371 287 LYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 364 (390)
Q Consensus 287 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 364 (390)
|+|++|.|+.+. +.. +..+++|++|+|++|+|+.++ ...+..+++|++|++++|++.-++
T Consensus 83 L~Ls~N~l~~i~-~~~----------------f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 83 LILSYNRLRCIP-PRT----------------FDGLKSLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp EECCSSCCCBCC-TTT----------------TTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEECSG
T ss_pred EECCCCccCEeC-HHH----------------hCCCCCCCEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCeecCC
Confidence 999999999884 333 678899999999999999875 256888999999999999997543
No 155
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=1.6e-13 Score=115.03 Aligned_cols=130 Identities=19% Similarity=0.253 Sum_probs=87.8
Q ss_pred CEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEc
Q 016371 185 AVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNL 264 (390)
Q Consensus 185 ~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 264 (390)
+.+++++++++..+..+. ++|++|++++|.++. ..+..+..+++|++|++++|.++.+++. .+..+++|+.|+|
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l 83 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDG---VFDKLTKLTILYL 83 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEEC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChh---HccCCCccCEEEC
Confidence 455555555544432222 456666666665552 1222335667788888888877766543 4677888888888
Q ss_pred CCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCc
Q 016371 265 EDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDL 338 (390)
Q Consensus 265 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~ 338 (390)
++|.++..++ ..+..+++|++|++++|.++.+ |... +..+++|++|+|++|.+...
T Consensus 84 ~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~--~~~~---------------~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 84 HENKLQSLPN-GVFDKLTQLKELALDTNQLKSV--PDGI---------------FDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC--CTTT---------------TTTCTTCCEEECCSSCBCCC
T ss_pred CCCCccccCH-HHhhCCcccCEEECcCCcceEe--CHHH---------------hcCCcccCEEEecCCCeecc
Confidence 8888887765 4567788899999999988876 3321 46678899999999988764
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=6.1e-15 Score=138.51 Aligned_cols=193 Identities=17% Similarity=0.108 Sum_probs=111.0
Q ss_pred cCcccEEECCCCcCCC--hHHHHHHHhcC-CCCCEEEccCCCCCCccC-CC-CCCCCccEEEeecccCCHHHHHHHHh--
Q 016371 155 VTNLKELDLTGNLLSD--WKDIGAFGEQL-PALAVLNLSNNLMSKEVT-GL-PQLKSIRILVLNCTGVNWMQVEILKH-- 227 (390)
Q Consensus 155 ~~~L~~L~Ls~n~l~~--~~~i~~~~~~l-~~L~~L~ls~n~l~~~~~-~~-~~l~~L~~L~L~~~~l~~~~~~~~~~-- 227 (390)
++.|+.|+|++|.++. +..+...+... ++|++|+|++|.++.... .+ ..+++|++|+|++|.++...+..+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4788888998888875 22333444333 588888888887764322 12 24567888888888887654444432
Q ss_pred --cCCcccEEeccCCCccccCCC-CCCccCCCCCccEEEcCCCCCCCchh---hhhcCCCCCcCeEecCCCccccccCCC
Q 016371 228 --SLPALEELHLMGNSISEITPV-SSPIVQGFDNLQLLNLEDNCIAEWSE---ILKLCQIRSLEQLYLNKNNLNRIYYPN 301 (390)
Q Consensus 228 --~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~ 301 (390)
..++|++|+|++|.++..... ++..+..+++|++|+|++|.+++... ...+..+++|++|+|++|.|++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 356788888888877653211 11123556778888888887765431 134555677888888888777643111
Q ss_pred CCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccC---CCC--CcEEE--ccCCCCC
Q 016371 302 NDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDS---FPK--LMDIR--LSENPVS 361 (390)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~---l~~--L~~L~--l~~n~l~ 361 (390)
.... +..+++|++|+|++|.|++.. ...+.. ... |+.+. +..|.+.
T Consensus 231 l~~~-------------L~~~~~L~~L~Ls~N~i~~~g-~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARA-------------AREHPSLELLHLYFNELSSEG-RQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHH-------------HHHCSSCCEEECTTSSCCHHH-HHHHHHCC------CEEECCCC----CH
T ss_pred HHHH-------------HHhCCCCCEEeccCCCCCHHH-HHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 1000 234567788888888777542 223322 221 55665 5555554
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=1.7e-14 Score=133.49 Aligned_cols=198 Identities=13% Similarity=0.124 Sum_probs=135.2
Q ss_pred cccccEeecCCcccC--------------------CCCcchhhh--------cCcccEEECCCCcCCChHHHHHHHhcCC
Q 016371 131 FEELTSAALPYLGVS--------------------SPGANIGTI--------VTNLKELDLTGNLLSDWKDIGAFGEQLP 182 (390)
Q Consensus 131 l~~L~~L~L~~~~i~--------------------~~~~~~~~~--------~~~L~~L~Ls~n~l~~~~~i~~~~~~l~ 182 (390)
+++|+.|+|++|.+. .++...+.. |++|+.|+|.+ .++.+. ...+..|+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~--~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIE--DAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEEC--TTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchh--HHHhhcCc
Confidence 788999999999888 122223334 67788888877 555422 14466778
Q ss_pred CCCEEEccCCCCCCccC-CCCCCCCccEEEeeccc---------------------------------------------
Q 016371 183 ALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTG--------------------------------------------- 216 (390)
Q Consensus 183 ~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~~~--------------------------------------------- 216 (390)
+|+.|+++.|.+....+ .|..+.++..+.+....
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence 88888888777765544 46666666666554411
Q ss_pred --------CCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcC-eE
Q 016371 217 --------VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE-QL 287 (390)
Q Consensus 217 --------l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~-~L 287 (390)
+.......+...+++|+++++++|.++.++.. .+.++.+|+.|+|.+| ++..+. ..+..+++|+ .+
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~---aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l 279 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF---TFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTL 279 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT---TTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEE
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh---hhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEE
Confidence 01111222223478888888888888877665 6788888888888887 666654 6778888888 88
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEc
Q 016371 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRL 355 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 355 (390)
.+.+ .++.+. +.. |..|++|+.|+++.|+++.++ ...|..+++|+.|..
T Consensus 280 ~l~~-~l~~I~-~~a----------------F~~c~~L~~l~l~~n~i~~I~-~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 280 ELPA-SVTAIE-FGA----------------FMGCDNLRYVLATGDKITTLG-DELFGNGVPSKLIYK 328 (329)
T ss_dssp EECT-TCCEEC-TTT----------------TTTCTTEEEEEECSSCCCEEC-TTTTCTTCCCCEEEC
T ss_pred EEcc-cceEEc-hhh----------------hhCCccCCEEEeCCCccCccc-hhhhcCCcchhhhcc
Confidence 8887 677663 222 778888888888888888774 357788888888763
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=1.3e-14 Score=136.38 Aligned_cols=168 Identities=18% Similarity=0.076 Sum_probs=79.3
Q ss_pred CCCCCEEEccCCCCCCccC-C----CC-CCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCC-CCCcc
Q 016371 181 LPALAVLNLSNNLMSKEVT-G----LP-QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPV-SSPIV 253 (390)
Q Consensus 181 l~~L~~L~ls~n~l~~~~~-~----~~-~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~ 253 (390)
+++|+.|++++|.++.... . +. ..++|++|+|++|.++...+..+...+++|++|+|++|.+++.... +...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3455666666665543211 1 11 2245666666666665544555444555566666666655433211 00011
Q ss_pred -CCCCCccEEEcCCCCCCCchhh---hhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEe
Q 016371 254 -QGFDNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLL 329 (390)
Q Consensus 254 -~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 329 (390)
...++|++|+|++|.+++.... ..+..+++|++|+|++|.|++.+...... .+..+++|++|+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-------------~L~~~~~L~~L~ 217 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-------------QLDRNRQLQELN 217 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-------------HGGGCSCCCEEE
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-------------HHhcCCCcCeEE
Confidence 2235566666666655442210 22344555666666666655432110000 023344566666
Q ss_pred CCCCCCCCchh---hhhccCCCCCcEEEccCCCCC
Q 016371 330 LGNNMIEDLAS---IDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 330 L~~N~i~~~~~---~~~l~~l~~L~~L~l~~n~l~ 361 (390)
|++|.|++... ...+..+++|++|+|++|+|+
T Consensus 218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 66666654321 123334556666666666655
No 159
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=1.6e-13 Score=140.02 Aligned_cols=176 Identities=19% Similarity=0.151 Sum_probs=85.4
Q ss_pred CcccEEECCCCcCCChHHHHHHHhcCCCCCE-----EEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCC
Q 016371 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAV-----LNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLP 230 (390)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~-----L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~ 230 (390)
+.++.|+|.+|.+.. .+..+.....|.. ++++.|++......+..+..|+.|+|++|.+. .++..+..++
T Consensus 173 ~~~~~l~L~~n~~~~---~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDE---ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF--NISANIFKYD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS--CCCGGGGGCC
T ss_pred CccceEEeeCCCCCc---chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC--CCChhhcCCC
Confidence 667888888887764 2333222222222 22233333322224566777777777777765 3333334677
Q ss_pred cccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhh
Q 016371 231 ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVS 310 (390)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 310 (390)
+|++|+|++|.++.++. .+..+++|+.|+|++|.|+.++ ..++.+++|++|+|++|.|+.+ |..
T Consensus 248 ~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~L~~N~l~~l--p~~-------- 311 (727)
T 4b8c_D 248 FLTRLYLNGNSLTELPA----EIKNLSNLRVLDLSHNRLTSLP--AELGSCFQLKYFYFFDNMVTTL--PWE-------- 311 (727)
T ss_dssp SCSCCBCTTSCCSCCCG----GGGGGTTCCEEECTTSCCSSCC--SSGGGGTTCSEEECCSSCCCCC--CSS--------
T ss_pred CCCEEEeeCCcCcccCh----hhhCCCCCCEEeCcCCcCCccC--hhhcCCCCCCEEECCCCCCCcc--Chh--------
Confidence 77777777777774432 4667777777777777777554 3466777777777777777755 554
Q ss_pred cccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCC-CCcEEEccCCCCC
Q 016371 311 AHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFP-KLMDIRLSENPVS 361 (390)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~-~L~~L~l~~n~l~ 361 (390)
+..+++|++|+|++|.|++.. +..+..+. .+..|++++|.+.
T Consensus 312 --------~~~l~~L~~L~L~~N~l~~~~-p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 312 --------FGNLCNLQFLGVEGNPLEKQF-LKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp --------TTSCTTCCCEECTTSCCCSHH-HHHHHHHHHHHHHHHHHHCCCC
T ss_pred --------hhcCCCccEEeCCCCccCCCC-hHHHhhcchhhhHHhhccCccc
Confidence 566777777777777777642 23333221 1223567777765
No 160
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=4.4e-16 Score=133.31 Aligned_cols=116 Identities=32% Similarity=0.405 Sum_probs=77.5
Q ss_pred HHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCcc
Q 016371 174 IGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIV 253 (390)
Q Consensus 174 i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 253 (390)
+|..+..+++|++|++++|.++..+ .+..+++|++|++++|.++ .++..+..+++|++|++++|.+++++ .+
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~-----~~ 111 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLS-----GI 111 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHH-----HH
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCC-----cc
Confidence 3445666677777777766666533 5556666777777776665 33444455677777777777776643 25
Q ss_pred CCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccc
Q 016371 254 QGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 254 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 297 (390)
..+++|+.|++++|.+++++.+..+..+++|++|++++|.+++.
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 56677778888888777766545677778888888888877665
No 161
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=3.2e-12 Score=106.39 Aligned_cols=108 Identities=22% Similarity=0.307 Sum_probs=86.1
Q ss_pred cccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhh
Q 016371 231 ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVS 310 (390)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 310 (390)
..+.+++++|.++.++.. + .++|+.|+|++|.++..++ ..+..+++|++|+|++|+|+.+ +...
T Consensus 10 ~~~~l~~s~n~l~~ip~~----~--~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l--~~~~------- 73 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG----I--PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQLTVL--PAGV------- 73 (170)
T ss_dssp ETTEEECTTSCCSSCCSC----C--CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCC--CTTT-------
T ss_pred CCCEEEeCCCCcCccCcc----C--CCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCCCcCcc--Chhh-------
Confidence 357888999888877643 2 2788999999999988765 5678889999999999999877 3321
Q ss_pred cccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCC
Q 016371 311 AHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 363 (390)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 363 (390)
+..+++|++|+|++|+|+.++ ...+..+++|++|+|++|++.-.
T Consensus 74 --------f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 74 --------FDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp --------TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBCTT
T ss_pred --------ccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCCCCCC
Confidence 567889999999999998875 24678899999999999998754
No 162
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=4.9e-12 Score=105.67 Aligned_cols=107 Identities=22% Similarity=0.303 Sum_probs=79.5
Q ss_pred ccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhc
Q 016371 232 LEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSA 311 (390)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 311 (390)
-+.+++++|.++.++.. + .++|+.|+|++|.+++.++ ..+..+++|+.|+|++|+|+.+ |...
T Consensus 14 ~~~l~~~~n~l~~iP~~----~--~~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i--~~~~-------- 76 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG----I--PTDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSNKLTAI--PTGV-------- 76 (174)
T ss_dssp SSEEECCSSCCSSCCSC----C--CTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC--CTTT--------
T ss_pred CcEEEeCCCCCCccCCC----c--CCCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCCCCCcc--ChhH--------
Confidence 36778888888766543 2 2678888888888887754 5677888888888888888876 3321
Q ss_pred ccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCC
Q 016371 312 HESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 363 (390)
Q Consensus 312 ~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 363 (390)
+..+++|++|+|++|+|+.++. ..+..+++|++|+|++|++...
T Consensus 77 -------~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 77 -------FDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp -------TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTT
T ss_pred -------hCCcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCcccc
Confidence 4677888888888888887642 4577788888888888888753
No 163
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.27 E-value=1.1e-11 Score=103.16 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=44.1
Q ss_pred CCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCc
Q 016371 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (390)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 284 (390)
++|++|+|++|.++. ..+..+..+++|++|+|++|.++.+++. .+..+++|+.|+|++|.++..++ ..+..+++|
T Consensus 30 ~~l~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~---~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAG---VFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CCCcEEEcCCCcCCc-cChhhhcCcccCCEEECCCCCcCccChh---hccCCCCCCEEECCCCccCEeCH-HHhcCCCCC
Confidence 344444444444432 1122234455555555555555554433 34555566666666666655543 345555666
Q ss_pred CeEecCCCcccc
Q 016371 285 EQLYLNKNNLNR 296 (390)
Q Consensus 285 ~~L~L~~n~l~~ 296 (390)
++|+|++|.++.
T Consensus 105 ~~L~L~~N~~~c 116 (170)
T 3g39_A 105 THIWLLNNPWDC 116 (170)
T ss_dssp CEEECCSSCBCT
T ss_pred CEEEeCCCCCCC
Confidence 666666665543
No 164
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=1.4e-11 Score=102.93 Aligned_cols=105 Identities=21% Similarity=0.278 Sum_probs=56.1
Q ss_pred EEEccCCCCCCccCCCCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcC
Q 016371 186 VLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLE 265 (390)
Q Consensus 186 ~L~ls~n~l~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~ 265 (390)
.+++++|+++..+..+. ++|++|+|++|.++. ..+..+..+++|++|+|++|.++++++. .+..+++|+.|+|+
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~---~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTG---VFDKLTQLTQLDLN 89 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCCCCCccChh---HhCCcchhhEEECC
Confidence 44444444443333222 444555555554442 1122334555666666666666655433 34556666666666
Q ss_pred CCCCCCchhhhhcCCCCCcCeEecCCCccccc
Q 016371 266 DNCIAEWSEILKLCQIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 266 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 297 (390)
+|.++..++ ..+..+++|++|+|++|.+...
T Consensus 90 ~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCT-TTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCH-HHhccccCCCEEEeCCCCcccc
Confidence 666666553 3456666677777776666543
No 165
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.19 E-value=7.2e-11 Score=110.00 Aligned_cols=210 Identities=18% Similarity=0.160 Sum_probs=137.0
Q ss_pred cccccEeecCCcccCC-CC-c-------chhhhcCcccEEECCCCcCCC----h---HHHHHHHhcCCCCCEEEccCCCC
Q 016371 131 FEELTSAALPYLGVSS-PG-A-------NIGTIVTNLKELDLTGNLLSD----W---KDIGAFGEQLPALAVLNLSNNLM 194 (390)
Q Consensus 131 l~~L~~L~L~~~~i~~-~~-~-------~~~~~~~~L~~L~Ls~n~l~~----~---~~i~~~~~~l~~L~~L~ls~n~l 194 (390)
...++.|.+......+ .. . ++. .+++|+.|.+.+..... | ..+...+..+|+|+.|.+++|.-
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~-~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKE-KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHH-HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhh-hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence 3456777777655431 11 0 122 34899999987653321 1 13667788999999999998731
Q ss_pred CCccCCCCCCCCccEEEeecccCCHHHHHHHH-hcCCcccEEeccC--CCccccC--CCCCCcc--CCCCCccEEEcCCC
Q 016371 195 SKEVTGLPQLKSIRILVLNCTGVNWMQVEILK-HSLPALEELHLMG--NSISEIT--PVSSPIV--QGFDNLQLLNLEDN 267 (390)
Q Consensus 195 ~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~-~~l~~L~~L~L~~--n~l~~~~--~~~~~~~--~~l~~L~~L~L~~n 267 (390)
... +.+ .+++|++|.+..|.++...+..+. ..+|+|++|+|+. |...+.. ..+...+ ..+++|+.|+|.+|
T Consensus 185 l~l-~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 185 LSI-GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp CBC-CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred cee-ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 112 233 378999999999999887666664 3799999999863 2211110 0001112 35789999999999
Q ss_pred CCCCchh--hhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhcc
Q 016371 268 CIAEWSE--ILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLD 345 (390)
Q Consensus 268 ~l~~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~ 345 (390)
.+.+... +.....+++|++|+|+.|.|++.+..... .++..+++|+.|+|++|.|++. ....+.
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~-------------~~L~~l~~L~~L~L~~n~i~d~-~~~~l~ 328 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL-------------DHVDKIKHLKFINMKYNYLSDE-MKKELQ 328 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH-------------TTHHHHTTCSEEECCSBBCCHH-HHHHHH
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH-------------hhcccCCcceEEECCCCcCCHH-HHHHHH
Confidence 9875332 12234689999999999999875311110 0124578999999999999874 344555
Q ss_pred C-CCCCcEEEccCCC
Q 016371 346 S-FPKLMDIRLSENP 359 (390)
Q Consensus 346 ~-l~~L~~L~l~~n~ 359 (390)
. + ...+++++++
T Consensus 329 ~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 329 KSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHC--CSEEECCSBC
T ss_pred HHc--CCEEEecCCc
Confidence 3 4 4678999887
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.12 E-value=2.1e-10 Score=108.69 Aligned_cols=196 Identities=9% Similarity=0.091 Sum_probs=123.9
Q ss_pred cccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEE
Q 016371 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILV 211 (390)
Q Consensus 133 ~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~ 211 (390)
+|+.+.+.. .+..++...+..|++|+.+++++|.++. ++.....+.+|+.+.+..+ +..... .|..+++|+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~---I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK---LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE---ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE---echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 577777765 5555555445556778888887777664 2222223567777777644 444433 466777788877
Q ss_pred eecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCC-----CchhhhhcCCCCCcCe
Q 016371 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIA-----EWSEILKLCQIRSLEQ 286 (390)
Q Consensus 212 L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~l~~l~~L~~ 286 (390)
+..+ ++. .-...+.. .+|+.+.+ .+.++.+... .+.++++|+.+++.+|.+. ..+. ..+..|++|+.
T Consensus 233 l~~~-l~~-I~~~aF~~-~~L~~i~l-p~~i~~I~~~---aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~c~~L~~ 304 (401)
T 4fdw_A 233 IPEN-VST-IGQEAFRE-SGITTVKL-PNGVTNIASR---AFYYCPELAEVTTYGSTFNDDPEAMIHP-YCLEGCPKLAR 304 (401)
T ss_dssp CCTT-CCE-ECTTTTTT-CCCSEEEE-ETTCCEECTT---TTTTCTTCCEEEEESSCCCCCTTCEECT-TTTTTCTTCCE
T ss_pred cCCC-ccC-cccccccc-CCccEEEe-CCCccEEChh---HhhCCCCCCEEEeCCccccCCcccEECH-HHhhCCccCCe
Confidence 7664 221 11112223 56777777 3445555443 5777888888888877654 2332 56777888888
Q ss_pred EecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016371 287 LYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 287 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+.|. +.++.+. ... |..|++|+.|.|..| ++.+. ..+|..+ +|++|.+.+|.+..
T Consensus 305 l~l~-~~i~~I~-~~a----------------F~~c~~L~~l~lp~~-l~~I~-~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 305 FEIP-ESIRILG-QGL----------------LGGNRKVTQLTIPAN-VTQIN-FSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp ECCC-TTCCEEC-TTT----------------TTTCCSCCEEEECTT-CCEEC-TTSSSSS-CCCEEEECCSSCCB
T ss_pred EEeC-CceEEEh-hhh----------------hcCCCCccEEEECcc-ccEEc-HHhCCCC-CCCEEEEcCCCCcc
Confidence 8887 4466663 222 677888888888655 55543 2567778 88888888887654
No 167
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.06 E-value=6.9e-10 Score=105.09 Aligned_cols=202 Identities=17% Similarity=0.166 Sum_probs=151.5
Q ss_pred HHHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCC
Q 016371 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (390)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l 204 (390)
..+.+|.+|+.++++.+.+..++...+. +.+|+.+.|..+ +..+. ...+.++++|+.+++..+ ++.... .|..
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~--~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~- 247 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIG--SQAFLKTSQLKTIEIPEN-VSTIGQEAFRE- 247 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEEC--TTTTTTCTTCCCEECCTT-CCEECTTTTTT-
T ss_pred HHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheeh--hhHhhCCCCCCEEecCCC-ccCcccccccc-
Confidence 3578899999999999999988885444 589999999865 44322 255788999999999875 544444 4555
Q ss_pred CCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCcc-----ccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcC
Q 016371 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSIS-----EITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLC 279 (390)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 279 (390)
++|+.+.+.++ ++. .-...+..|++|+.+.+.+|.+. .+... .+.++++|+.++|.+ .++.... ..+.
T Consensus 248 ~~L~~i~lp~~-i~~-I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---aF~~c~~L~~l~l~~-~i~~I~~-~aF~ 320 (401)
T 4fdw_A 248 SGITTVKLPNG-VTN-IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY---CLEGCPKLARFEIPE-SIRILGQ-GLLG 320 (401)
T ss_dssp CCCSEEEEETT-CCE-ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT---TTTTCTTCCEECCCT-TCCEECT-TTTT
T ss_pred CCccEEEeCCC-ccE-EChhHhhCCCCCCEEEeCCccccCCcccEECHH---HhhCCccCCeEEeCC-ceEEEhh-hhhc
Confidence 78999999654 331 22345588999999999988765 34433 688999999999994 4776665 6788
Q ss_pred CCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCC-CCcEEEccCC
Q 016371 280 QIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFP-KLMDIRLSEN 358 (390)
Q Consensus 280 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~-~L~~L~l~~n 358 (390)
.|++|+.+.|..+ ++.+. ... |..+ +|+.|++++|.+..+. ...+..++ +++.|.+-.+
T Consensus 321 ~c~~L~~l~lp~~-l~~I~-~~a----------------F~~~-~L~~l~l~~n~~~~l~-~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 321 GNRKVTQLTIPAN-VTQIN-FSA----------------FNNT-GIKEVKVEGTTPPQVF-EKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TCCSCCEEEECTT-CCEEC-TTS----------------SSSS-CCCEEEECCSSCCBCC-CSSCCCSCTTCCEEEECGG
T ss_pred CCCCccEEEECcc-ccEEc-HHh----------------CCCC-CCCEEEEcCCCCcccc-cccccCCCCCccEEEeCHH
Confidence 9999999999665 77663 222 7788 9999999999887653 24566675 7889988776
Q ss_pred CC
Q 016371 359 PV 360 (390)
Q Consensus 359 ~l 360 (390)
.+
T Consensus 381 ~~ 382 (401)
T 4fdw_A 381 SV 382 (401)
T ss_dssp GH
T ss_pred HH
Confidence 53
No 168
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.05 E-value=4e-11 Score=106.37 Aligned_cols=118 Identities=24% Similarity=0.210 Sum_probs=83.8
Q ss_pred CCCccE--EEcCCCCCCCchhh-hh-cCCCCCcCeEecCCCcccccc-CCCCCchhhhhhcccccccCCCCCCCCCEEeC
Q 016371 256 FDNLQL--LNLEDNCIAEWSEI-LK-LCQIRSLEQLYLNKNNLNRIY-YPNNDTIHELVSAHESHEESYLPFQNLCCLLL 330 (390)
Q Consensus 256 l~~L~~--L~L~~n~l~~~~~~-~~-l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 330 (390)
.+.|.. ++++.|........ .. -..+++|+.|+|++|.|+++. ++.. +..+++|+.|+|
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~----------------~~~l~~L~~L~L 203 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSI----------------VQKAPNLKILNL 203 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTH----------------HHHSTTCCEEEC
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhH----------------HhhCCCCCEEEC
Confidence 344544 56666654333321 11 135789999999999998863 1222 456899999999
Q ss_pred CCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCc-chhhhhhhhhcCCceEecCcccCC
Q 016371 331 GNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRG-GISRFAIIARLGKIKILNGSEVNS 390 (390)
Q Consensus 331 ~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~i~~l~~L~~Ln~s~i~~ 390 (390)
++|+|+++..++.+..+ +|++|+|++||+...... ...+..+++.+|+|+.||+..|++
T Consensus 204 s~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p 263 (267)
T 3rw6_A 204 SGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 263 (267)
T ss_dssp TTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCC
T ss_pred CCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCC
Confidence 99999998766666666 999999999999842211 122345689999999999999875
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=7.4e-10 Score=102.87 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=48.2
Q ss_pred EEEeecc-cCCHHHHHHHHhcCCcccEEeccC-CCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCe
Q 016371 209 ILVLNCT-GVNWMQVEILKHSLPALEELHLMG-NSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (390)
Q Consensus 209 ~L~L~~~-~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 286 (390)
.++++++ .++ .+|. +..+++|++|+|++ |.++.+++. .+..+++|+.|+|++|.|++.++ ..+..+++|+.
T Consensus 12 ~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~ 84 (347)
T 2ifg_A 12 GLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELR---DLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSR 84 (347)
T ss_dssp CEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGG---GSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCE
T ss_pred EEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChh---HhccccCCCEEECCCCccceeCH-HHhcCCcCCCE
Confidence 3455555 555 2444 45566666666664 666665433 45566666666666666666554 44556666666
Q ss_pred EecCCCccccc
Q 016371 287 LYLNKNNLNRI 297 (390)
Q Consensus 287 L~L~~n~l~~~ 297 (390)
|+|++|+|+.+
T Consensus 85 L~l~~N~l~~~ 95 (347)
T 2ifg_A 85 LNLSFNALESL 95 (347)
T ss_dssp EECCSSCCSCC
T ss_pred EeCCCCcccee
Confidence 66666666655
No 170
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=1.5e-10 Score=107.59 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=74.4
Q ss_pred EEEccCC-CCCCccCCCCCCCCccEEEeec-ccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEE
Q 016371 186 VLNLSNN-LMSKEVTGLPQLKSIRILVLNC-TGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLN 263 (390)
Q Consensus 186 ~L~ls~n-~l~~~~~~~~~l~~L~~L~L~~-~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 263 (390)
.++++++ +++..+. +..+.+|++|+|++ |.++. ..+..+..+++|++|+|++|.++++++. .+..+++|+.|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPD---AFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTT---GGGSCSCCCEEE
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCCccceeCHH---HhcCCcCCCEEe
Confidence 4577776 7776655 77777888888875 77764 2334456778888888888888877654 567778888888
Q ss_pred cCCCCCCCchhhhhcCCCCCcCeEecCCCccccc
Q 016371 264 LEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRI 297 (390)
Q Consensus 264 L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 297 (390)
|++|.|+..++ ..+..++ |+.|+|.+|.+...
T Consensus 87 l~~N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 87 LSFNALESLSW-KTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCSSCCSCCCS-TTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCCccceeCH-HHcccCC-ceEEEeeCCCccCC
Confidence 88888877664 3444444 88888888877643
No 171
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=2.9e-09 Score=89.61 Aligned_cols=122 Identities=14% Similarity=0.130 Sum_probs=84.6
Q ss_pred hHHHHHHhccccccEeecCCc-ccCCCCc-chh---hhcCcccEEECCCCcCCC--hHHHHHHHhcCCCCCEEEccCCCC
Q 016371 122 DKIQDKFSKFEELTSAALPYL-GVSSPGA-NIG---TIVTNLKELDLTGNLLSD--WKDIGAFGEQLPALAVLNLSNNLM 194 (390)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~-~i~~~~~-~~~---~~~~~L~~L~Ls~n~l~~--~~~i~~~~~~l~~L~~L~ls~n~l 194 (390)
+.+...+...+.|++|+|++| .+...+. .++ ...++|++|+|++|.+.+ ...+...+...++|++|+|++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 456677888889999999988 8776543 222 224788899999998875 334566677778888888888888
Q ss_pred CCc-----cCCCCCCCCccEEEe--ecccCCHHH---HHHHHhcCCcccEEeccCCCcc
Q 016371 195 SKE-----VTGLPQLKSIRILVL--NCTGVNWMQ---VEILKHSLPALEELHLMGNSIS 243 (390)
Q Consensus 195 ~~~-----~~~~~~l~~L~~L~L--~~~~l~~~~---~~~~~~~l~~L~~L~L~~n~l~ 243 (390)
... ...+...++|++|+| ++|.+.... +...+...++|++|++++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 653 123556677888888 678777554 3334455567777777777664
No 172
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.81 E-value=2.1e-09 Score=88.63 Aligned_cols=104 Identities=17% Similarity=0.207 Sum_probs=78.5
Q ss_pred CCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCc-cccccCCCCCchhhhhhcccccccCCCC----CCCCCEEeCC
Q 016371 257 DNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN-LNRIYYPNNDTIHELVSAHESHEESYLP----FQNLCCLLLG 331 (390)
Q Consensus 257 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~L~ 331 (390)
..|++||+++|.+++.. +..+..+++|++|+|++|. |++..... +.. +++|++|+|+
T Consensus 61 ~~L~~LDLs~~~Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~-----------------L~~~~~~~~~L~~L~Ls 122 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLER-----------------LSQLENLQKSMLEMEII 122 (176)
T ss_dssp CCEEEEEEESCCCCGGG-GGGGTTCSCCCEEEEESCTTCCHHHHHH-----------------HHTCHHHHHHCCEEEEE
T ss_pred ceEeEEeCcCCCccHHH-HHHhcCCCCCCEEEeCCCCccCHHHHHH-----------------HHhcccccCCCCEEEcC
Confidence 57999999999988755 3677899999999999995 87754221 222 3579999999
Q ss_pred CC-CCCCchhhhhccCCCCCcEEEccCCC-CCCCCCcchhhhhhhhhcCCceE
Q 016371 332 NN-MIEDLASIDSLDSFPKLMDIRLSENP-VSDPGRGGISRFAIIARLGKIKI 382 (390)
Q Consensus 332 ~N-~i~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~i~~l~~L~~ 382 (390)
+| +|++. .+..+..+++|++|+|++|+ +++ .++.....-..+|++++
T Consensus 123 ~C~~ITD~-Gl~~L~~~~~L~~L~L~~c~~Itd---~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 123 SCGNVTDK-GIIALHHFRNLKYLFLSDLPGVKE---KEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp SCTTCCHH-HHHHGGGCTTCCEEEEESCTTCCC---HHHHHHHHHHHCTTCEE
T ss_pred CCCcCCHH-HHHHHhcCCCCCEEECCCCCCCCc---hHHHHHHHHHHCCCcEE
Confidence 99 69885 55778899999999999998 553 22333334577888864
No 173
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.78 E-value=1.5e-09 Score=91.46 Aligned_cols=129 Identities=12% Similarity=0.061 Sum_probs=94.3
Q ss_pred HHHHHHhcCCcccEEeccCC-CccccCC-CCCCccCCCCCccEEEcCCCCCCCchhh---hhcCCCCCcCeEecCCCccc
Q 016371 221 QVEILKHSLPALEELHLMGN-SISEITP-VSSPIVQGFDNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLN 295 (390)
Q Consensus 221 ~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~n~l~ 295 (390)
.+...+...+.|++|+|++| .+..... .+...+...++|++|+|++|.+.+.... ..+...++|++|+|++|.|+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 56677788999999999999 8865321 1122456678999999999999864421 34556689999999999998
Q ss_pred cccCCCCCchhhhhhcccccccCCCCCCCCCEEeC--CCCCCCCchh---hhhccCCCCCcEEEccCCCCCC
Q 016371 296 RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLL--GNNMIEDLAS---IDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L--~~N~i~~~~~---~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
+.+...... .+...++|++|+| ++|.|++... .+.+...++|++|+|++|.+.+
T Consensus 107 ~~g~~~l~~-------------~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 107 GSGILALVE-------------ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHHH-------------GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHH-------------HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 754221111 1455688999999 8899987421 2556678999999999999864
No 174
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=1.8e-08 Score=93.70 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=59.5
Q ss_pred hcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CC--CCCCCccEEEeecc--cC-C---HHHHHH
Q 016371 154 IVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GL--PQLKSIRILVLNCT--GV-N---WMQVEI 224 (390)
Q Consensus 154 ~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~--~~l~~L~~L~L~~~--~l-~---~~~~~~ 224 (390)
.+|+|+.|+|++|.-.. ++. + .+++|++|++..+.+..... .+ ..+++|++|+|+.+ .. . ...+..
T Consensus 170 ~~P~L~~L~L~g~~~l~---l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS---IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp TCTTCCEEEEECCBTCB---CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred cCCCCcEEEEeCCCCce---ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 34666666665552111 111 1 25566666665555432211 11 24556666655421 10 0 001111
Q ss_pred HH--hcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchh--h-hhcCCCCCcCeEecCCCcccc
Q 016371 225 LK--HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSE--I-LKLCQIRSLEQLYLNKNNLNR 296 (390)
Q Consensus 225 ~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~-~~l~~l~~L~~L~L~~n~l~~ 296 (390)
.+ ..+|+|++|+|.+|.+++...........+++|++|+|+.|.+.+... + ..+..+++|+.|+|++|.|++
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 11 235566666666655543211000001234566666666666554321 0 112334566666666665554
No 175
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.59 E-value=1.8e-08 Score=89.32 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=45.8
Q ss_pred cCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC--CCCCCCCccEEEeecccCCH------HHHHHHH
Q 016371 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT--GLPQLKSIRILVLNCTGVNW------MQVEILK 226 (390)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~l~~L~~L~L~~~~l~~------~~~~~~~ 226 (390)
+++|+.|+|++|.++++..++..+..+++|+.|+|++|++++... .+..+ +|++|+|++|.+.. .-...++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHH
Confidence 466666666666666655555556666666666666666665411 12222 66666666666542 1122344
Q ss_pred hcCCcccEEe
Q 016371 227 HSLPALEELH 236 (390)
Q Consensus 227 ~~l~~L~~L~ 236 (390)
..+|+|+.|+
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 5666666654
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=6.3e-08 Score=79.77 Aligned_cols=100 Identities=16% Similarity=0.244 Sum_probs=57.9
Q ss_pred cccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCC-CCCchhhhhcCCC----CCcCeEecCCCc-cccccCCCCCc
Q 016371 231 ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNC-IAEWSEILKLCQI----RSLEQLYLNKNN-LNRIYYPNNDT 304 (390)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~ 304 (390)
.|++|++++|.+++.... .+..+++|++|+|++|. +++.. +..++.+ ++|++|+|++|. ||+.+...
T Consensus 62 ~L~~LDLs~~~Itd~GL~---~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~--- 134 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFD---HMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDKGIIA--- 134 (176)
T ss_dssp CEEEEEEESCCCCGGGGG---GGTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH---
T ss_pred eEeEEeCcCCCccHHHHH---HhcCCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCHHHHHH---
Confidence 355555555555443222 34566777777777774 54433 3445543 468888888875 77654222
Q ss_pred hhhhhhcccccccCCCCCCCCCEEeCCCC-CCCCchh-hhhc-cCCCCCc
Q 016371 305 IHELVSAHESHEESYLPFQNLCCLLLGNN-MIEDLAS-IDSL-DSFPKLM 351 (390)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~N-~i~~~~~-~~~l-~~l~~L~ 351 (390)
+..+++|++|+|++| +|++... ...+ ..+|+++
T Consensus 135 --------------L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 135 --------------LHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp --------------GGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred --------------HhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 345788888888888 6776431 1223 2466653
No 177
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.38 E-value=6.3e-07 Score=84.59 Aligned_cols=202 Identities=14% Similarity=0.127 Sum_probs=108.1
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCC
Q 016371 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (390)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~ 206 (390)
.+.++++|+.+.+..+ +..++...+..|.+|+.+++..+ +..+. ...+..+..|+.+.+..+... ..........
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~--~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~ 231 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIR--DYCFAECILLENMEFPNSLYY-LGDFALSKTG 231 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEEC--TTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCC
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeC--chhhccccccceeecCCCceE-eehhhcccCC
Confidence 5678899999998754 34444445555788998888766 22211 133556777777766554321 1122233455
Q ss_pred ccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCC------------------CCCccCCCCCccEEEcCCCC
Q 016371 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPV------------------SSPIVQGFDNLQLLNLEDNC 268 (390)
Q Consensus 207 L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------------~~~~~~~l~~L~~L~L~~n~ 268 (390)
|+.+.+...... .-...+..+..|+.+.+..+... +... ....+..+.+|+.+.+..+
T Consensus 232 l~~i~ip~~~~~--i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 232 VKNIIIPDSFTE--LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CCEEEECTTCCE--ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-
T ss_pred CceEEECCCcee--cccccccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc-
Confidence 666555433111 00112234555555555443221 1111 0013445566666666544
Q ss_pred CCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCC
Q 016371 269 IAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFP 348 (390)
Q Consensus 269 l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~ 348 (390)
++.... ..+..+.+|+.+.|..+ ++.++ ... |..|.+|+.+++..+ ++.+. ..++..|+
T Consensus 308 i~~I~~-~aF~~c~~L~~i~lp~~-v~~I~-~~a----------------F~~c~~L~~i~lp~~-l~~I~-~~aF~~C~ 366 (394)
T 4fs7_A 308 VKFIGE-EAFESCTSLVSIDLPYL-VEEIG-KRS----------------FRGCTSLSNINFPLS-LRKIG-ANAFQGCI 366 (394)
T ss_dssp CCEECT-TTTTTCTTCCEECCCTT-CCEEC-TTT----------------TTTCTTCCEECCCTT-CCEEC-TTTBTTCT
T ss_pred cceech-hhhcCCCCCCEEEeCCc-ccEEh-HHh----------------ccCCCCCCEEEECcc-ccEeh-HHHhhCCC
Confidence 333333 45566677777776533 55442 121 666777777777665 55442 24677777
Q ss_pred CCcEEEccCC
Q 016371 349 KLMDIRLSEN 358 (390)
Q Consensus 349 ~L~~L~l~~n 358 (390)
+|+.+++..+
T Consensus 367 ~L~~i~lp~~ 376 (394)
T 4fs7_A 367 NLKKVELPKR 376 (394)
T ss_dssp TCCEEEEEGG
T ss_pred CCCEEEECCC
Confidence 7777777544
No 178
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.31 E-value=1.4e-06 Score=82.08 Aligned_cols=197 Identities=12% Similarity=0.129 Sum_probs=122.0
Q ss_pred chhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccC-CCCCCCCccEEEeecccCCHHHHHHHHhc
Q 016371 150 NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHS 228 (390)
Q Consensus 150 ~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~ 228 (390)
..+..|.+|+.+.+.++... +. ...+..+.+|+.+.+..+ +..... .+..+..|+.+.+..+.... ...+..
T Consensus 156 ~aF~~c~~L~~i~l~~~~~~-I~--~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i---~~~~~~ 228 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSMET-LH--NGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL---GDFALS 228 (394)
T ss_dssp TTTTTCTTCCEEECCTTCCE-EC--TTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE---CTTTTT
T ss_pred hhhcccCCCcEEecCCccce-ec--cccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEe---ehhhcc
Confidence 34455799999999876432 11 145678899999999876 443333 57788889888877654321 112234
Q ss_pred CCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCC---------------------CCCcCeE
Q 016371 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ---------------------IRSLEQL 287 (390)
Q Consensus 229 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~---------------------l~~L~~L 287 (390)
..+|+.+.+... ++.+... .+..+..|+.+.+..+... ... ..+.. +.+|+.+
T Consensus 229 ~~~l~~i~ip~~-~~~i~~~---~f~~~~~l~~~~~~~~~~~-i~~-~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i 302 (394)
T 4fs7_A 229 KTGVKNIIIPDS-FTELGKS---VFYGCTDLESISIQNNKLR-IGG-SLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEV 302 (394)
T ss_dssp TCCCCEEEECTT-CCEECSS---TTTTCSSCCEEEECCTTCE-ECS-CTTTTCTTCCEEEECSSEECTTTTTTCTTCCEE
T ss_pred cCCCceEEECCC-ceecccc---cccccccceeEEcCCCcce-eec-cccccccccceeccCceeecccccccccccccc
Confidence 568888888654 3433332 4667778888887765322 111 22333 4444444
Q ss_pred ecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcc
Q 016371 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGG 367 (390)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 367 (390)
.+..+ ++.++ . ..|..|.+|+.++|.++ ++.+. ..++..|.+|+.+.+..+ +..
T Consensus 303 ~l~~~-i~~I~--~---------------~aF~~c~~L~~i~lp~~-v~~I~-~~aF~~c~~L~~i~lp~~-l~~----- 356 (394)
T 4fs7_A 303 KLLDS-VKFIG--E---------------EAFESCTSLVSIDLPYL-VEEIG-KRSFRGCTSLSNINFPLS-LRK----- 356 (394)
T ss_dssp EECTT-CCEEC--T---------------TTTTTCTTCCEECCCTT-CCEEC-TTTTTTCTTCCEECCCTT-CCE-----
T ss_pred ccccc-cceec--h---------------hhhcCCCCCCEEEeCCc-ccEEh-HHhccCCCCCCEEEECcc-ccE-----
Confidence 44332 33331 1 12778899999999755 66553 256888999999999776 542
Q ss_pred hhhhhhhhhcCCceEecCc
Q 016371 368 ISRFAIIARLGKIKILNGS 386 (390)
Q Consensus 368 ~~~~~~i~~l~~L~~Ln~s 386 (390)
+.. .++..|++|+.+++.
T Consensus 357 I~~-~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 357 IGA-NAFQGCINLKKVELP 374 (394)
T ss_dssp ECT-TTBTTCTTCCEEEEE
T ss_pred ehH-HHhhCCCCCCEEEEC
Confidence 322 236788888888653
No 179
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.15 E-value=1.2e-06 Score=73.43 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=85.8
Q ss_pred HHHHHHhcCCcccEEeccCC-CccccCC-CCCCccCCCCCccEEEcCCCCCCCchhh---hhcCCCCCcCeEecCCCccc
Q 016371 221 QVEILKHSLPALEELHLMGN-SISEITP-VSSPIVQGFDNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLN 295 (390)
Q Consensus 221 ~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~n~l~ 295 (390)
.+..+...-+.|++|+|++| .+..... .+...+..-..|+.|+|++|.+.+.... ..+..-+.|++|+|+.|.|+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 46666677788999999985 7654211 0122455567899999999998865431 34556688999999999998
Q ss_pred cccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCC---CCCCc---hhhhhccCCCCCcEEEccCCCCC
Q 016371 296 RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNN---MIEDL---ASIDSLDSFPKLMDIRLSENPVS 361 (390)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N---~i~~~---~~~~~l~~l~~L~~L~l~~n~l~ 361 (390)
+.+....... +...+.|++|+|++| .|.+. ...+.+...+.|+.|+++.|.+.
T Consensus 112 ~~Ga~ala~a-------------L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 112 PELLARLLRS-------------TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHH-------------TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHH-------------HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 7643222111 344567999999876 44532 12256777889999999877543
No 180
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.11 E-value=1e-05 Score=76.20 Aligned_cols=82 Identities=11% Similarity=0.045 Sum_probs=38.3
Q ss_pred HhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCCc
Q 016371 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (390)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L 207 (390)
+..+..|+.+.+..+ +..++...+..|.+|+.+.+..+... +. ...+..+..|+.+.+..+ +............|
T Consensus 110 F~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~-I~--~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l 184 (394)
T 4gt6_A 110 FMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTS-VA--DGMFSYCYSLHTVTLPDS-VTAIEERAFTGTAL 184 (394)
T ss_dssp TTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCE-EC--TTTTTTCTTCCEEECCTT-CCEECTTTTTTCCC
T ss_pred chhcccceeeccCCc-cceehhhhhhhhcccccccccceeee-ec--ccceecccccccccccce-eeEeccccccccce
Confidence 445555555555432 33333333344566777766543211 10 123456667777776554 22222221223456
Q ss_pred cEEEeec
Q 016371 208 RILVLNC 214 (390)
Q Consensus 208 ~~L~L~~ 214 (390)
+.+.+..
T Consensus 185 ~~i~ip~ 191 (394)
T 4gt6_A 185 TQIHIPA 191 (394)
T ss_dssp SEEEECT
T ss_pred eEEEECC
Confidence 6665543
No 181
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.04 E-value=1.1e-05 Score=67.59 Aligned_cols=119 Identities=16% Similarity=0.143 Sum_probs=70.1
Q ss_pred hHHHHHHhccccccEeecCCc-ccCCCCc-----chhhhcCcccEEECCCCcCCC--hHHHHHHHhcCCCCCEEEccCCC
Q 016371 122 DKIQDKFSKFEELTSAALPYL-GVSSPGA-----NIGTIVTNLKELDLTGNLLSD--WKDIGAFGEQLPALAVLNLSNNL 193 (390)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~-~i~~~~~-----~~~~~~~~L~~L~Ls~n~l~~--~~~i~~~~~~l~~L~~L~ls~n~ 193 (390)
+.+...+.+-+.|++|+|+++ .|...+. .+... ..|+.|+|++|.+.+ ...+...+..-+.|++|+|++|.
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 345556667777888888775 6655433 22222 667777777777764 23455666667777777777777
Q ss_pred CCCcc-----CCCCCCCCccEEEeecc---cCCHH---HHHHHHhcCCcccEEeccCCC
Q 016371 194 MSKEV-----TGLPQLKSIRILVLNCT---GVNWM---QVEILKHSLPALEELHLMGNS 241 (390)
Q Consensus 194 l~~~~-----~~~~~l~~L~~L~L~~~---~l~~~---~~~~~~~~l~~L~~L~L~~n~ 241 (390)
|.... ..+..-..|++|+|+++ .+... .+...+..-+.|++|+++.|.
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 76431 12344455777777654 33432 233444555666666665554
No 182
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.97 E-value=9.6e-05 Score=69.49 Aligned_cols=219 Identities=14% Similarity=0.165 Sum_probs=115.4
Q ss_pred HHhccccccEeecCCcccCCCCcchhhhcCcccEEECCCCcCCChHHHHHHHhcCCCCCEEEccCCCCCCccCCCCCCCC
Q 016371 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (390)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~i~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~ 206 (390)
.+..+.+|+.+.+.. .+..++...+..|.+|+.+.+..+. .. +....-...+|+.+.+..+...-....+..+..
T Consensus 132 aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~~-~~---I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~ 206 (394)
T 4gt6_A 132 AFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDSV-TA---IEERAFTGTALTQIHIPAKVTRIGTNAFSECFA 206 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-CE---ECTTTTTTCCCSEEEECTTCCEECTTTTTTCTT
T ss_pred hhhhhcccccccccc-eeeeecccceeccccccccccccee-eE---eccccccccceeEEEECCcccccccchhhhccc
Confidence 346677778777754 2333444344456777777776542 21 111111234566666654322111112334444
Q ss_pred ccEEEeecccCCH-----------------------------------HHHHHHHhcCCcccEEeccCCCccccCCCCCC
Q 016371 207 IRILVLNCTGVNW-----------------------------------MQVEILKHSLPALEELHLMGNSISEITPVSSP 251 (390)
Q Consensus 207 L~~L~L~~~~l~~-----------------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 251 (390)
++........... ..-...+..+..|+.+.+..+.. .+...
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~--- 282 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTG--- 282 (394)
T ss_dssp CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTT---
T ss_pred cceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCc---
Confidence 4443322211000 00012235666777777755432 23222
Q ss_pred ccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCC
Q 016371 252 IVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLG 331 (390)
Q Consensus 252 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 331 (390)
.+.++..|+.+.+. +.++..+. ..+..+.+|+.+.|..+ ++.++ ... |..|.+|+.+.|.
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~-~aF~~c~~L~~i~lp~~-v~~I~-~~a----------------F~~C~~L~~i~ip 342 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPE-SVFAGCISLKSIDIPEG-ITQIL-DDA----------------FAGCEQLERIAIP 342 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECT-TTTTTCTTCCEEECCTT-CCEEC-TTT----------------TTTCTTCCEEEEC
T ss_pred ccccccccccccCC-CcccccCc-eeecCCCCcCEEEeCCc-ccEeh-HhH----------------hhCCCCCCEEEEC
Confidence 46677778888775 34554443 56777888888888653 55553 222 7778889998886
Q ss_pred CCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecC
Q 016371 332 NNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 385 (390)
Q Consensus 332 ~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 385 (390)
.+ ++.+. -.++..|++|+.+++.++... . . .+..+..|+.+.+
T Consensus 343 ~s-v~~I~-~~aF~~C~~L~~i~~~~~~~~------~-~--~~~~~~~L~~i~i 385 (394)
T 4gt6_A 343 SS-VTKIP-ESAFSNCTALNNIEYSGSRSQ------W-N--AISTDSGLQNLPV 385 (394)
T ss_dssp TT-CCBCC-GGGGTTCTTCCEEEESSCHHH------H-H--TCBCCCCC-----
T ss_pred cc-cCEEh-HhHhhCCCCCCEEEECCceee------h-h--hhhccCCCCEEEe
Confidence 55 55543 256888888999988876432 1 1 1445666666654
No 183
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.73 E-value=0.00017 Score=67.21 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=32.4
Q ss_pred CCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCCCCCcchhhhhhhhhcCCceEecC
Q 016371 319 YLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 385 (390)
Q Consensus 319 ~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 385 (390)
+..|++|+.+.+.++.++.++. ..+..|.+|+.+.|..+ +.. +.. .++..|.+|+.+.+
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~-----I~~-~aF~~C~~L~~i~i 340 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKT-----IQV-YAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCE-----ECT-TTTTTCTTCCCCCC
T ss_pred cccccccccccccccccceehh-hhhcCCCCCCEEEcCcc-ccE-----EHH-HHhhCCCCCCEEEE
Confidence 5556677777776666665432 45666677777776543 321 221 12455566655544
No 184
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.28 E-value=0.0011 Score=61.73 Aligned_cols=131 Identities=13% Similarity=0.230 Sum_probs=83.9
Q ss_pred CCCCCCccEEEeecccCCHHHHHHHHhcCCcccEEeccCCCccccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCC
Q 016371 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (390)
Q Consensus 201 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 280 (390)
+..+..|+.+.+..+--. .....+..+..|+.+.+..+ ++.+... .+..+..|+.+.+..+ +...+. ..+..
T Consensus 213 f~~~~~l~~i~~~~~~~~--i~~~~f~~~~~L~~i~lp~~-v~~I~~~---aF~~~~~l~~i~l~~~-i~~i~~-~aF~~ 284 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTT--LGDGAFYGMKALDEIAIPKN-VTSIGSF---LLQNCTALKTLNFYAK-VKTVPY-LLCSG 284 (379)
T ss_dssp TTTCSSCSEEECCTTCCE--ECTTTTTTCSSCCEEEECTT-CCEECTT---TTTTCTTCCEEEECCC-CSEECT-TTTTT
T ss_pred cccccccceeeeccceeE--EccccccCCccceEEEcCCC-ccEeCcc---ccceeehhcccccccc-ceeccc-ccccc
Confidence 334556666665443211 11222356677888877655 5544433 5667778888888654 444433 56778
Q ss_pred CCCcCeEecCCCccccccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCC
Q 016371 281 IRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSEN 358 (390)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n 358 (390)
+++|+.+.+.++.++.++ ... |..|.+|+.+.|..+ ++.+. ..++..|.+|+++.+..+
T Consensus 285 c~~L~~i~l~~~~i~~I~-~~a----------------F~~c~~L~~i~lp~~-l~~I~-~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLE-PRV----------------FMDCVKLSSVTLPTA-LKTIQ-VYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEEECCTTCCEEC-TTT----------------TTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccceeh-hhh----------------hcCCCCCCEEEcCcc-ccEEH-HHHhhCCCCCCEEEECCc
Confidence 888999998888887773 222 778889999998755 55443 246778888888888554
No 185
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.17 E-value=0.00074 Score=52.64 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=47.5
Q ss_pred CeEecCCCccc--cccCCCCCchhhhhhcccccccCCCCCCCCCEEeCCCCCCCCchhhhhccCCCCCcEEEccCCCCCC
Q 016371 285 EQLYLNKNNLN--RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 362 (390)
Q Consensus 285 ~~L~L~~n~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~n~l~~ 362 (390)
..++.+++.++ .+ |.. -.++|++|+|++|+|+.++ ...|..+++|+.|+|++||+.=
T Consensus 11 ~~v~Cs~~~L~~~~v--P~~------------------lp~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASL--PTA------------------FPVDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTS--CSC------------------CCTTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccC--CCC------------------CCcCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCeec
Confidence 47888888888 55 543 1257999999999999985 3678889999999999999975
Q ss_pred CC
Q 016371 363 PG 364 (390)
Q Consensus 363 ~~ 364 (390)
+.
T Consensus 70 dC 71 (130)
T 3rfe_A 70 DC 71 (130)
T ss_dssp SG
T ss_pred cC
Confidence 43
No 186
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.50 E-value=0.0048 Score=47.96 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=31.9
Q ss_pred EEeccCCCcc--ccCCCCCCccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCCccc
Q 016371 234 ELHLMGNSIS--EITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLN 295 (390)
Q Consensus 234 ~L~L~~n~l~--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 295 (390)
.++.+++.++ .++.. + -++|+.|+|++|.|+.++. ..+..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~----l--p~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA----F--PVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC----C--CTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC----C--CcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence 4555566555 44322 1 1356667777777666654 45556666777777766654
No 187
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=36.20 E-value=14 Score=29.05 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=28.1
Q ss_pred CCCCCCCCEEEeCCCCeeeEEEE----------EeeecCCCCCeEEEEEecCCC
Q 016371 6 PESYKLGQRVHSANDARRIGTVK----------YVGEVQGYSGTWLGVDWDYGN 49 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~----------~~g~~~~~~~~w~Gve~d~~~ 49 (390)
|..|++||.|.|.+| |+|. -.|.+.+..+.-+||......
T Consensus 31 m~~yk~GD~VdIk~~----~svqKGmPhk~yHGkTGrV~~v~~~AvgViVnk~v 80 (160)
T 2zkr_q 31 MRIYKKGDIVDIKGM----GTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQV 80 (160)
T ss_dssp HCCCCTTCEEEECCC----TTCCSSCCCGGGTTCEEEECCCCSSSEEEEEEECC
T ss_pred HHHcCCCCEEEEEec----CCcccCCCCcccCCCCeEEEeEcCCEEEEEEEEee
Confidence 578999999999876 3332 344566666777888777555
No 188
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=31.30 E-value=8.5 Score=27.46 Aligned_cols=40 Identities=33% Similarity=0.492 Sum_probs=26.4
Q ss_pred CCCCCCCCEEEeCCCCeeeEEEE-------E---eeecCCCCCeEEEEEecCCC
Q 016371 6 PESYKLGQRVHSANDARRIGTVK-------Y---VGEVQGYSGTWLGVDWDYGN 49 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~~~~~tv~-------~---~g~~~~~~~~w~Gve~d~~~ 49 (390)
|..|++||.|.|..|. +|. | .|.+.+..+.-+||+..+..
T Consensus 31 m~~yk~Gd~VdIk~~~----svqKGmPhk~yHGkTG~V~~v~~~AvgV~Vnk~v 80 (96)
T 1vq8_Q 31 VEEFDDGEKVHLKIDP----SVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGG 80 (96)
T ss_dssp HCCCCTTCEEEECCCT----TCCSSCCCGGGTTCEEEEEEEETTEEEEEEEETT
T ss_pred HHHcCCCCEEEEEecC----CccCCCCcccCCCCCeEEEeECCCEEEEEEeecC
Confidence 5789999999998763 222 1 33444455667888777654
No 189
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=31.09 E-value=16 Score=27.38 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=12.6
Q ss_pred CCCCCCCCEEEeCCC
Q 016371 6 PESYKLGQRVHSAND 20 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~ 20 (390)
++.|+|||||++.+.
T Consensus 34 ~prF~vGDrVrvr~~ 48 (126)
T 2zzd_A 34 KSKFNVGDRVRIKDL 48 (126)
T ss_dssp SCSSCTTCEEEECCC
T ss_pred CCccCCCCEEEEccC
Confidence 578999999999743
No 190
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.63 E-value=90 Score=22.13 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=26.5
Q ss_pred ccCCCCCccEEEcCCCCCCCchhhhhcCCCCCcCeEecCCC
Q 016371 252 IVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKN 292 (390)
Q Consensus 252 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n 292 (390)
.+.++.+|+.+.+-.+ ++.... ..+..|.+|+.+.+...
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEcCC
Confidence 5777788888877665 333333 56777888888887653
No 191
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=24.47 E-value=59 Score=28.21 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=19.0
Q ss_pred CCCCCCCEEEeCCCCeeeEEEEEeee
Q 016371 7 ESYKLGQRVHSANDARRIGTVKYVGE 32 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~ 32 (390)
..|+|||+|.+++ ..|+|.-+|.
T Consensus 127 ~pf~vGD~I~i~~---~~G~V~~I~l 149 (285)
T 3udc_A 127 DQFSVGDYVTING---ISGTVEEIGL 149 (285)
T ss_dssp TSCCTTCEEEETT---EEEEEEEECS
T ss_pred CCccCCCEEEECC---EEEEEEEeee
Confidence 5799999999965 3499999984
No 192
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=23.49 E-value=55 Score=24.25 Aligned_cols=39 Identities=28% Similarity=0.338 Sum_probs=23.7
Q ss_pred CCCCCCCCEEEeCCCC-e-eeEEEEEeeecCCCCCeEEEEEecCCC
Q 016371 6 PESYKLGQRVHSANDA-R-RIGTVKYVGEVQGYSGTWLGVDWDYGN 49 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~~-~-~~~tv~~~g~~~~~~~~w~Gve~d~~~ 49 (390)
++++.+||||...... + +.|+|.=+ .....+-|.+||-+
T Consensus 3 ~~~v~vGq~V~akh~ngryy~~~V~~~-----~~~~~y~V~F~DgS 43 (118)
T 2qqr_A 3 MQSITAGQKVISKHKNGRFYQCEVVRL-----TTETFYEVNFDDGS 43 (118)
T ss_dssp SSCCCTTCEEEEECTTSSEEEEEEEEE-----EEEEEEEEEETTSC
T ss_pred cceeccCCEEEEECCCCCEEeEEEEEE-----eeEEEEEEEcCCCC
Confidence 5789999999875221 2 12443332 23567777777665
No 193
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} SCOP: b.34.19.1
Probab=23.10 E-value=1.4e+02 Score=20.73 Aligned_cols=35 Identities=31% Similarity=0.592 Sum_probs=22.0
Q ss_pred CCCCCCEEEeC---------CCCeeeEEEEEeeecCCCCCeEEEEEecC
Q 016371 8 SYKLGQRVHSA---------NDARRIGTVKYVGEVQGYSGTWLGVDWDY 47 (390)
Q Consensus 8 ~~~~g~~v~~~---------~~~~~~~tv~~~g~~~~~~~~w~Gve~d~ 47 (390)
.+.+|.||.=. +.+...|||. + ...+.|+.|.||.
T Consensus 21 ~i~vG~RVVRGpDWkWgdQDGg~g~~GtV~--~---~~~~gwv~V~Wd~ 64 (89)
T 3dkm_A 21 YMVPGARVTRGLDWKWRDQDGSPQGEGTVT--G---ELHNGWIDVTWDA 64 (89)
T ss_dssp HCSTTCEEEECTTCCCTTTTSSTTCCEEEC--S---CCBTTEEEEEETT
T ss_pred ccccCcEEEeCCCCcccccCCCCCcccEEe--E---ecCCCeEEEEeCC
Confidence 46789998755 2222345553 2 2247899999995
No 194
>3n7x_A Capsid protein; icosahedral virus capsid, virus-like particle, capsid protei barrel, parvovirus; 2.50A {Infectious hypodermal and hematopoietinecrosis virus}
Probab=22.70 E-value=13 Score=29.86 Aligned_cols=42 Identities=31% Similarity=0.567 Sum_probs=24.6
Q ss_pred CCCCCCCCEEE--eCCCCeeeEEEEEeeecCCCC----CeEEE-EEecCCC-CC
Q 016371 6 PESYKLGQRVH--SANDARRIGTVKYVGEVQGYS----GTWLG-VDWDYGN-GK 51 (390)
Q Consensus 6 ~~~~~~g~~v~--~~~~~~~~~tv~~~g~~~~~~----~~w~G-ve~d~~~-g~ 51 (390)
|.++.-|+|-. +-||.| --|-|++|... ..|-| +.||.|+ |.
T Consensus 200 meqmrtgdrkaytihgdtr----nwyggeipttgptfipkwggqikwdkpslgn 249 (329)
T 3n7x_A 200 MEQMRTGDRKAYTIHGDTR----NWYGGEIPTTGPTFIPKWGGQIKWDKPSLGN 249 (329)
T ss_dssp EEEECTTCEEEEEEECCCS----SEECSCCCSSSCBBCSCCBTTBCCBCCTTSC
T ss_pred HHHhhcCCceeEEeccccc----cccCCccCCCCCccccccCceeeccCccccC
Confidence 45677888843 335544 23445666532 23544 6899998 74
No 195
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=22.42 E-value=1.7e+02 Score=19.14 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=22.8
Q ss_pred CCCCCCCCEEEeC-CCC-eeeEEEEEeeecCCCCCeEEEEEecC
Q 016371 6 PESYKLGQRVHSA-NDA-RRIGTVKYVGEVQGYSGTWLGVDWDY 47 (390)
Q Consensus 6 ~~~~~~g~~v~~~-~~~-~~~~tv~~~g~~~~~~~~w~Gve~d~ 47 (390)
++.++||++|.+. +|. .++++|.-+..- +. +-|.++|
T Consensus 4 ~~~~~vGd~vmArW~D~~yYpA~I~si~~~----~~-Y~V~F~d 42 (67)
T 3p8d_A 4 SSEFQINEQVLACWSDCRFYPAKVTAVNKD----GT-YTVKFYD 42 (67)
T ss_dssp -CCCCTTCEEEEECTTSCEEEEEEEEECTT----SE-EEEEETT
T ss_pred CcccccCCEEEEEcCCCCEeeEEEEEECCC----Ce-EEEEEeC
Confidence 4789999999875 332 244555544321 33 7788876
No 196
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=21.81 E-value=59 Score=28.27 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.1
Q ss_pred CCCCCCCEEEeCCCCeeeEEEEEeee
Q 016371 7 ESYKLGQRVHSANDARRIGTVKYVGE 32 (390)
Q Consensus 7 ~~~~~g~~v~~~~~~~~~~tv~~~g~ 32 (390)
..|+|||+|.+++ ..|+|.-+|.
T Consensus 128 ~pf~vGD~I~i~g---~~G~V~~I~l 150 (286)
T 2vv5_A 128 RPFRAGEYVDLGG---VAGTVLSVQI 150 (286)
T ss_dssp CSSCTTCEEESSS---CEEEEEEECS
T ss_pred CCccCCCEEEECC---EEEEEEEEEe
Confidence 5799999999965 3399999984
No 197
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=21.01 E-value=1.4e+02 Score=20.70 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=26.8
Q ss_pred CCCCCCCEEEeCC--CCeeeEEEEEeeecCCCCCeEEEEEecCCCCCCC
Q 016371 7 ESYKLGQRVHSAN--DARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHD 53 (390)
Q Consensus 7 ~~~~~g~~v~~~~--~~~~~~tv~~~g~~~~~~~~w~Gve~d~~~g~~~ 53 (390)
..|+||.+|.+.+ ++..+|+|.=+. ..+..+=|.+|.+..+.|
T Consensus 18 ~~F~vGmkLEA~D~~~~~~~a~i~~v~----~~~~~v~VHfdGW~~~yD 62 (88)
T 2eqm_A 18 ITFEIGARLEALDYLQKWYPSRIEKID----YEEGKMLVHFERWSHRYD 62 (88)
T ss_dssp CCCCSSCEEEEECTTSCEEEEEEEEEE----TTTTEEEEEESSSTTTEE
T ss_pred CcCCCCCEEEEEcCCCCeeEEEEEEEe----ccCCEEEEEECCCCCccc
Confidence 6799999997654 344556655322 234467777877765444
No 198
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=20.90 E-value=39 Score=28.32 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=12.6
Q ss_pred CCCCCCCCEEEeCCC
Q 016371 6 PESYKLGQRVHSAND 20 (390)
Q Consensus 6 ~~~~~~g~~v~~~~~ 20 (390)
++.|+|||||++.+.
T Consensus 136 ~~~F~vGd~Vrv~~~ 150 (226)
T 1ugp_B 136 PPKFKEGDVVRFSTA 150 (226)
T ss_dssp CCSCCTTCEEEECCC
T ss_pred CCcCCCCCeEEEccC
Confidence 588999999999743
No 199
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=20.02 E-value=38 Score=28.43 Aligned_cols=14 Identities=29% Similarity=0.748 Sum_probs=12.2
Q ss_pred CCCCCCCCEEEeCC
Q 016371 6 PESYKLGQRVHSAN 19 (390)
Q Consensus 6 ~~~~~~g~~v~~~~ 19 (390)
++.|+|||||++.+
T Consensus 139 ~~~F~vGd~Vrv~~ 152 (229)
T 3hht_B 139 SPRFKVGERIKTKN 152 (229)
T ss_dssp CCSCCTTCEEEECC
T ss_pred CCCCCCCCEEEECC
Confidence 57899999999973
Done!