BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016372
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HIC|A Chain A, The Crystal Structure Of Phosphofructokinase(Lin2199)from
Listeria Innocua
pdb|3IE7|A Chain A, The Crystal Structure Of Phosphofructokinase (Lin2199)
From Listeria Innocua In Complex With Atp At 1.6a
pdb|3JUL|A Chain A, Crystal Structure Of Listeria Innocua
D-Tagatose-6-Phosphate Kinase Bound With Substrate
Length = 320
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 24/129 (18%)
Query: 51 AGPSPCEFSSSPLNTPLEPNSPAGKFLSRVLQNQRQYFNLAVSDELKLLANDRDAAVARM 110
AG P ++ S L G FL N +Y NLAV + + + D +A +
Sbjct: 140 AGSPPPHYTLSDFKELLRTVKATGAFLG--CDNSGEYLNLAVEXGVDFIKPNEDEVIAIL 197
Query: 111 SLSSGSDEGPLHRRIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSRCIYNGRL- 169
+ S E +T E + Y++ V L K S C +NG+L
Sbjct: 198 DEKTNS------------LEENIRTLAEKIPYLV---------VSLGAKGSICAHNGKLY 236
Query: 170 EIWPSKDWE 178
++ P K E
Sbjct: 237 QVIPPKVQE 245
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 48 QARAGPSPCEFSSSPLNTPLEPNSPAGKFLSRVLQNQ 84
Q GP P ++ +NTPL PN G F +RV+Q +
Sbjct: 78 QPLGGPEPGPYAQPSINTPL-PNLQNGPFYARVIQKR 113
>pdb|3HLK|A Chain A, Crystal Structure Of Human Mitochondrial Acyl-Coa
Thioesterase (Acot2)
pdb|3HLK|B Chain B, Crystal Structure Of Human Mitochondrial Acyl-Coa
Thioesterase (Acot2)
Length = 446
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 225 YVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNN 284
Y AS+L G +L YY E L + LHL + F EA +Y L +V G
Sbjct: 190 YRASLLAGKGFAVXALAYYNYEDLPKTXETLHLEY-----FEEAXNYLLSHPEVKGPGVG 244
Query: 285 TQSISLG 291
IS G
Sbjct: 245 LLGISKG 251
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 48 QARAGPSPCEFSSSPLNTPLEPNSPAGKFLSRVLQNQ 84
Q GP P ++ +NTPL PN G +RV+Q +
Sbjct: 211 QPLGGPEPGPYAQPSVNTPL-PNLQNGPIYARVIQKR 246
>pdb|2CYY|A Chain A, Crystal Structure Of Ph1519 From Pyrococcus Horikosii Ot3
Length = 151
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 96 LKLLANDRDAAVARMSLSSGSDEGPLHRRIAQLKE 130
+K+L ND A + +S +G E +H RI +L+E
Sbjct: 13 IKILQNDGKAPLREISKITGLAESTIHERIRKLRE 47
>pdb|1RI7|A Chain A, Crystal Structure Of A Protein In The LrpASNC FAMILY FROM
THE Hyperthermophilic Archaeon Pyrococcus Sp. Ot3
pdb|2E1C|A Chain A, Structure Of Putative Hth-Type Transcriptional Regulator
Ph1519DNA Complex
pdb|2ZNY|A Chain A, Crystal Structure Of The Ffrp
pdb|2ZNY|B Chain B, Crystal Structure Of The Ffrp
pdb|2ZNY|C Chain C, Crystal Structure Of The Ffrp
pdb|2ZNY|D Chain D, Crystal Structure Of The Ffrp
pdb|2ZNY|E Chain E, Crystal Structure Of The Ffrp
pdb|2ZNY|F Chain F, Crystal Structure Of The Ffrp
pdb|2ZNY|G Chain G, Crystal Structure Of The Ffrp
pdb|2ZNY|H Chain H, Crystal Structure Of The Ffrp
pdb|2ZNZ|A Chain A, Crystal Structure Of Ffrp
pdb|2ZNZ|B Chain B, Crystal Structure Of Ffrp
pdb|2ZNZ|C Chain C, Crystal Structure Of Ffrp
pdb|2ZNZ|D Chain D, Crystal Structure Of Ffrp
pdb|2ZNZ|E Chain E, Crystal Structure Of Ffrp
pdb|2ZNZ|F Chain F, Crystal Structure Of Ffrp
pdb|2ZNZ|G Chain G, Crystal Structure Of Ffrp
pdb|2ZNZ|H Chain H, Crystal Structure Of Ffrp
Length = 171
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 96 LKLLANDRDAAVARMSLSSGSDEGPLHRRIAQLKE 130
+K+L ND A + +S +G E +H RI +L+E
Sbjct: 33 IKILQNDGKAPLREISKITGLAESTIHERIRKLRE 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,229,570
Number of Sequences: 62578
Number of extensions: 433504
Number of successful extensions: 1130
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 8
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)