BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016372
         (390 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O66874|PBPA_AQUAE Penicillin-binding protein 1A OS=Aquifex aeolicus (strain VF5)
           GN=mrcA PE=1 SV=1
          Length = 726

 Score = 36.2 bits (82), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 13/102 (12%)

Query: 147 YKFSEIRVQLVP-----KLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGL 201
           YKFS+  + +V      K     Y GRL+I+ + D + + I + + LE   + ++ +IGL
Sbjct: 253 YKFSDYFLDMVKSYVFNKYGEIAYKGRLKIYTTIDLDYQKIAQ-KSLEEGLKRVAKIIGL 311

Query: 202 ----RANCSVTDSWAT-TEIQRLRLGRVYVASILY--GYFLK 236
               ++   +  ++    +++RL+ G++YVA IL   G F+K
Sbjct: 312 PFLPKSEEDMELAYEKEAQLKRLKRGKIYVAKILKYDGNFMK 353


>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1
          Length = 35213

 Score = 35.0 bits (79), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 10  PAKTLPFLPPSKPRGPRSLPPSNSNFGRRRLLRSGVVVQARAGPSPCEFSSSPLNTPLEP 69
           P KT P +PP KP+     PPS +   + +L R       R  PSP     +P  +P+  
Sbjct: 249 PHKTPPRIPP-KPKSRSPTPPSIA--AKAQLARQQSPSPIRHSPSPVRHVRAPTPSPVRS 305

Query: 70  NSPAGKF 76
            SPAG+ 
Sbjct: 306 VSPAGRI 312


>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4
          Length = 34350

 Score = 34.3 bits (77), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 1   MDHSLSLHGPAKTLPFLPPSKPRGPRSLPPSNSNFGRRRLLRSGVVVQARAGPSPCEFSS 60
           +D +     P KT P +PP KP+     PPS +   + +L R       R  PSP     
Sbjct: 241 IDGAAGQQLPHKTPPRIPP-KPKSRSPTPPSIA--AKAQLARQQSPSPIRHSPSPVRHVR 297

Query: 61  SPLNTPLEPNSPAGKFLSRVLQNQR 85
           +P  +P+   SPA +  +  +++ R
Sbjct: 298 APTPSPVRSVSPAARISTSPIRSVR 322


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,431,686
Number of Sequences: 539616
Number of extensions: 5873797
Number of successful extensions: 14565
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 14535
Number of HSP's gapped (non-prelim): 40
length of query: 390
length of database: 191,569,459
effective HSP length: 119
effective length of query: 271
effective length of database: 127,355,155
effective search space: 34513247005
effective search space used: 34513247005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)