Query 016372
Match_columns 390
No_of_seqs 99 out of 118
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 12:29:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dve_B Voltage-dependent N-typ 55.1 5.9 0.0002 25.2 1.7 18 220-237 1-18 (23)
2 3dvk_B Voltage-dependent R-typ 51.7 7.7 0.00026 24.7 1.8 19 220-238 2-20 (23)
3 3bxl_B CAM, voltage-dependent 35.1 24 0.00082 23.0 2.2 20 223-242 1-20 (26)
4 3g43_E Voltage-dependent L-typ 34.7 12 0.00041 30.3 1.0 21 217-237 56-76 (81)
5 2xf7_A GP23.1; viral protein; 22.6 21 0.00073 26.2 0.4 21 228-248 4-24 (51)
6 2f6m_A Suppressor protein STP2 21.4 86 0.0029 24.2 3.6 23 120-144 3-25 (65)
7 3c1q_A General secretion pathw 11.8 2.8E+02 0.0096 21.8 4.6 50 73-135 60-109 (123)
8 2p22_A Suppressor protein STP2 10.4 7.7E+02 0.026 22.0 7.4 23 120-144 112-134 (174)
9 1y74_B MLIN-2/CASK, peripheral 9.6 63 0.0022 22.8 -0.0 22 64-87 12-33 (50)
10 2qsr_A Transcription-repair co 9.1 1.3E+02 0.0046 26.4 1.9 21 118-138 30-50 (173)
No 1
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=55.08 E-value=5.9 Score=25.22 Aligned_cols=18 Identities=22% Similarity=0.838 Sum_probs=15.3
Q ss_pred hhhHHHHHHhhHhHHHhh
Q 016372 220 RLGRVYVASILYGYFLKS 237 (390)
Q Consensus 220 ~Lg~vYAASmMyGYFLr~ 237 (390)
.+|++||+=|++-||=+.
T Consensus 1 ~VGKiYAallI~d~~r~~ 18 (23)
T 3dve_B 1 HMGKVYAALMIFDFYKQN 18 (26)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 369999999999999654
No 2
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=51.65 E-value=7.7 Score=24.68 Aligned_cols=19 Identities=26% Similarity=0.772 Sum_probs=16.3
Q ss_pred hhhHHHHHHhhHhHHHhhH
Q 016372 220 RLGRVYVASILYGYFLKSA 238 (390)
Q Consensus 220 ~Lg~vYAASmMyGYFLr~~ 238 (390)
.+|++||+-|++-||-+.-
T Consensus 2 ~VGKiYA~llI~d~~r~~k 20 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSK 20 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHh
Confidence 4799999999999997654
No 3
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=35.08 E-value=24 Score=23.03 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=16.2
Q ss_pred HHHHHHhhHhHHHhhHHHHH
Q 016372 223 RVYVASILYGYFLKSASLRY 242 (390)
Q Consensus 223 ~vYAASmMyGYFLr~~eqR~ 242 (390)
+||||=|++-||=+.=..|-
T Consensus 1 KvYAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 1 KIYAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred ChhHHHHHHHHHHHHHhhhh
Confidence 48999999999977666554
No 4
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=34.68 E-value=12 Score=30.28 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=15.8
Q ss_pred chhhhhHHHHHHhhHhHHHhh
Q 016372 217 QRLRLGRVYVASILYGYFLKS 237 (390)
Q Consensus 217 sr~~Lg~vYAASmMyGYFLr~ 237 (390)
+..++|++||+-|++-||=+.
T Consensus 56 ~~lTVGKiYA~llI~d~~r~~ 76 (81)
T 3g43_E 56 DEVTVGKFYATFLIQEYFRKF 76 (81)
T ss_dssp ---CCCCHHHHHHHHHHHHHH
T ss_pred CcEeehHHHHHHHHHHHHHHH
Confidence 567899999999999999543
No 5
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=22.56 E-value=21 Score=26.23 Aligned_cols=21 Identities=52% Similarity=0.599 Sum_probs=13.0
Q ss_pred HhhHhHHHhhHHHHHHHHHHH
Q 016372 228 SILYGYFLKSASLRYYLEECL 248 (390)
Q Consensus 228 SmMyGYFLr~~eqR~qLE~sl 248 (390)
|++||||+-.-.---.+|.-|
T Consensus 4 S~L~G~F~D~W~~GT~~~~~m 24 (51)
T 2xf7_A 4 SLLYGYFLDSWLDGTASEELL 24 (51)
T ss_dssp CTTHHHHHHHHHHTCCCHHHH
T ss_pred hHHHHHHHHHHhcchhhHHHH
Confidence 689999997654433333333
No 6
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=21.44 E-value=86 Score=24.22 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=17.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHH
Q 016372 120 PLHRRIAQLKEHECQTAVEDVMYML 144 (390)
Q Consensus 120 ~LyrRIAevKe~Err~alEdImY~l 144 (390)
.||+.+=++-+.| .|+||.||.|
T Consensus 3 pl~~Qll~l~Aed--~AieDaiy~L 25 (65)
T 2f6m_A 3 DGLNQLYNLVAQD--YALTDTIEAL 25 (65)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3666776666666 4999999986
No 7
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=11.75 E-value=2.8e+02 Score=21.78 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=27.7
Q ss_pred hhhHHHHHHhhcccchHHHHHHHHHHHHHhHHHHHHhccCCCCCCchhHHHHHHHHhHHHHHH
Q 016372 73 AGKFLSRVLQNQRQYFNLAVSDELKLLANDRDAAVARMSLSSGSDEGPLHRRIAQLKEHECQT 135 (390)
Q Consensus 73 ~GqfLs~iL~~~PhLf~~Av~~qLe~L~~drdaa~~~~~~s~~s~e~~LyrRIAevKe~Err~ 135 (390)
.|+-|++-|+.+|..||..+-+.+ .++|. ++.=+-...|+|+.-+++.+.
T Consensus 60 ~G~sls~Al~~~~~~fp~~~~~mi--------~~GE~-----sG~L~~~L~~la~~~e~~~~~ 109 (123)
T 3c1q_A 60 EGYTLSDSLGDYPHVFDELFRSMV--------AAGEK-----SGHLDSVLERLADYAENRQKM 109 (123)
T ss_dssp TTCCHHHHHTTCTTTSCHHHHHHH--------HHHHH-----HTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhccccCCHHHHHHH--------HHHHH-----hCcHHHHHHHHHHHHHHHHHH
Confidence 467778888887878876544333 22232 232334456677665554433
No 8
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=10.37 E-value=7.7e+02 Score=22.05 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=19.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHH
Q 016372 120 PLHRRIAQLKEHECQTAVEDVMYML 144 (390)
Q Consensus 120 ~LyrRIAevKe~Err~alEdImY~l 144 (390)
.||+.+=++-+.+ .||||.||+|
T Consensus 112 ~l~~Qll~l~Aed--~AieDaIy~L 134 (174)
T 2p22_A 112 DGLNQLYNLVAQD--YALTDTIECL 134 (174)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHH
Confidence 7888887777766 5999999986
No 9
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=9.61 E-value=63 Score=22.82 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=17.0
Q ss_pred CCCCCCCCchhhHHHHHHhhcccc
Q 016372 64 NTPLEPNSPAGKFLSRVLQNQRQY 87 (390)
Q Consensus 64 ~APl~~eSp~GqfLs~iL~~~PhL 87 (390)
++|+. .++.++.|..+|+. ||+
T Consensus 12 L~~~~-~~~~~~EL~~lL~~-PHf 33 (50)
T 1y74_B 12 ISCYP-ENNDAKELKRILTQ-PHF 33 (50)
T ss_dssp HHTCS-SCHHHHHHHHHHHS-HHH
T ss_pred HhcCC-CChHHHHHHHHHcC-HHH
Confidence 34553 38999999999987 985
No 10
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=9.06 E-value=1.3e+02 Score=26.39 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=15.6
Q ss_pred chhHHHHHHHHhHHHHHHHHH
Q 016372 118 EGPLHRRIAQLKEHECQTAVE 138 (390)
Q Consensus 118 e~~LyrRIAevKe~Err~alE 138 (390)
.+-+|||||.++..|--.+++
T Consensus 30 RL~lYkria~~~~~eel~~l~ 50 (173)
T 2qsr_A 30 KIEIYKKIRQIDNRVNYEELQ 50 (173)
T ss_dssp HHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 458999999997766655554
Done!