Query 016372
Match_columns 390
No_of_seqs 99 out of 118
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 12:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016372.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016372hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v4aa2 d.218.1.9 (A:2-286) Gl 22.0 28 0.002 31.0 3.4 20 75-94 39-58 (285)
2 d2cvoa1 c.2.1.3 (A:68-218,A:38 12.0 37 0.0027 27.5 1.4 15 73-87 17-31 (183)
3 d1h9aa2 d.81.1.5 (A:182-412,A: 11.1 23 0.0017 31.7 -0.3 22 187-208 52-73 (290)
4 d2g17a1 c.2.1.3 (A:1-153,A:309 10.3 47 0.0034 26.5 1.5 15 73-87 13-27 (179)
5 d1qkia2 d.81.1.5 (A:200-434,A: 9.7 28 0.002 31.4 -0.3 23 186-208 56-78 (297)
6 d2nn6a2 d.101.1.1 (A:185-302) 9.6 1.3E+02 0.0097 22.6 3.9 32 310-341 57-88 (118)
7 d2nn6c2 d.101.1.1 (C:188-276) 8.5 1.6E+02 0.012 20.7 3.8 29 310-338 55-83 (89)
8 d2p61a1 a.24.29.1 (A:34-152) H 8.2 99 0.0072 24.0 2.6 36 90-125 12-47 (119)
9 d2f6ma1 a.2.17.1 (A:322-385) V 8.0 76 0.0056 22.7 1.7 11 134-144 14-24 (64)
10 d1vkna1 c.2.1.3 (A:1-144,A:308 7.6 69 0.0051 26.1 1.5 15 73-87 13-27 (176)
No 1
>d1v4aa2 d.218.1.9 (A:2-286) Glutamine synthase adenylyltransferase GlnE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.98 E-value=28 Score=30.95 Aligned_cols=20 Identities=10% Similarity=0.228 Sum_probs=17.2
Q ss_pred hHHHHHHhhcccchHHHHHH
Q 016372 75 KFLSRVLQNQRQYFNLAVSD 94 (390)
Q Consensus 75 qfLs~iL~~~PhLf~~Av~~ 94 (390)
.||+.+|..||+++....+.
T Consensus 39 ~~L~~~L~r~P~~l~~L~~~ 58 (285)
T d1v4aa2 39 DFVQDSVIAHPEWLTELESQ 58 (285)
T ss_dssp HHHHHHHHHCTHHHHHHHHS
T ss_pred HHHHHHHHHCHHHHHHHHhC
Confidence 68999999999999987664
No 2
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=12.03 E-value=37 Score=27.51 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.7
Q ss_pred hhhHHHHHHhhcccc
Q 016372 73 AGKFLSRVLQNQRQY 87 (390)
Q Consensus 73 ~GqfLs~iL~~~PhL 87 (390)
+||.|-++|.+||+.
T Consensus 17 vG~elirLL~~HP~~ 31 (183)
T d2cvoa1 17 TGAEIVRLLANHPQF 31 (183)
T ss_dssp HHHHHHHHHTTCSSE
T ss_pred HHHHHHHHHHhCCCc
Confidence 699999999999974
No 3
>d1h9aa2 d.81.1.5 (A:182-412,A:427-485) Glucose 6-phosphate dehydrogenase {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=11.09 E-value=23 Score=31.74 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhccccCCCCC
Q 016372 187 VLEMIREHISTVIGLRANCSVT 208 (390)
Q Consensus 187 v~emI~~hl~~vLG~~~~~~~~ 208 (390)
+.+||||||..||...+-+...
T Consensus 52 iRDmvQNHLlQll~lvaMe~P~ 73 (290)
T d1h9aa2 52 LLDMIQNHTMQIVGWLAMEKPE 73 (290)
T ss_dssp HHHTTTTHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 5899999999999888766553
No 4
>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}
Probab=10.29 E-value=47 Score=26.48 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=13.7
Q ss_pred hhhHHHHHHhhcccc
Q 016372 73 AGKFLSRVLQNQRQY 87 (390)
Q Consensus 73 ~GqfLs~iL~~~PhL 87 (390)
+|+.|-++|.+||+.
T Consensus 13 vG~eLlrlL~~HP~~ 27 (179)
T d2g17a1 13 AGAELVSYVNRHPHM 27 (179)
T ss_dssp HHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHhCCCC
Confidence 699999999999985
No 5
>d1qkia2 d.81.1.5 (A:200-434,A:450-511) Glucose 6-phosphate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.65 E-value=28 Score=31.39 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhccccCCCCC
Q 016372 186 EVLEMIREHISTVIGLRANCSVT 208 (390)
Q Consensus 186 Ev~emI~~hl~~vLG~~~~~~~~ 208 (390)
-+.+||||||..||...+-+...
T Consensus 56 alRDmvQNHllQll~lvaME~P~ 78 (297)
T d1qkia2 56 IIRDVMQNHLLQMLCLVAMEKPA 78 (297)
T ss_dssp HHHHTTTTHHHHHHHHHHCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHhCCcc
Confidence 45899999999999987766553
No 6
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.55 E-value=1.3e+02 Score=22.56 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=28.4
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHHhhhhcCC
Q 016372 310 GFDPETLQRCAKLRSREAVNLVEKHSCALFGD 341 (390)
Q Consensus 310 sfD~eTLqr~AtirSkEAv~lIEkht~ALFG~ 341 (390)
.|+++++.+|..+..+.+-.|.+..-.||-.+
T Consensus 57 ~l~~~~l~~~~~~A~~~~~el~~~i~~aLk~~ 88 (118)
T d2nn6a2 57 MLLKDQVLRCSKIAGVKVAEITELILKALEND 88 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999988543
No 7
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.50 E-value=1.6e+02 Score=20.71 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=26.0
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 016372 310 GFDPETLQRCAKLRSREAVNLVEKHSCAL 338 (390)
Q Consensus 310 sfD~eTLqr~AtirSkEAv~lIEkht~AL 338 (390)
.|++++++.|..+..+.+-.|.+..-+||
T Consensus 55 ~l~~~~l~~~~~~A~~~~~~l~~~l~~al 83 (89)
T d2nn6c2 55 GLTGAKLQDCMSRAVTRHKEVKKLMDEVI 83 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999998888776
No 8
>d2p61a1 a.24.29.1 (A:34-152) Hypothetical protein TM1646 {Thermotoga maritima [TaxId: 2336]}
Probab=8.19 E-value=99 Score=24.05 Aligned_cols=36 Identities=6% Similarity=-0.130 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhccCCCCCCchhHHHHH
Q 016372 90 LAVSDELKLLANDRDAAVARMSLSSGSDEGPLHRRI 125 (390)
Q Consensus 90 ~Av~~qLe~L~~drdaa~~~~~~s~~s~e~~LyrRI 125 (390)
...+++|++|.++.+.++++.+.+.+-.++.-||..
T Consensus 12 ~~~~e~L~~l~~~I~~~G~~L~~~~t~~~l~~YK~l 47 (119)
T d2p61a1 12 DHFEKLLEEAVEEVIDSGNELVRSPTPSNLKRYKNA 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 556889999999999999886655555566666653
No 9
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.01 E-value=76 Score=22.66 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=9.3
Q ss_pred HHHHHHHHHHH
Q 016372 134 QTAVEDVMYML 144 (390)
Q Consensus 134 r~alEdImY~l 144 (390)
-.|+||.||+|
T Consensus 14 d~AieDaiy~L 24 (64)
T d2f6ma1 14 DYALTDTIEAL 24 (64)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46899999986
No 10
>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}
Probab=7.64 E-value=69 Score=26.13 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=13.7
Q ss_pred hhhHHHHHHhhcccc
Q 016372 73 AGKFLSRVLQNQRQY 87 (390)
Q Consensus 73 ~GqfLs~iL~~~PhL 87 (390)
+|+.|-.+|.+||+.
T Consensus 13 vG~eLirlL~~HP~~ 27 (176)
T d1vkna1 13 TGLELVRLLKNHPEA 27 (176)
T ss_dssp HHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHhCCCc
Confidence 699999999999985
Done!