BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016373
         (390 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
          Length = 772

 Score = 28.5 bits (62), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 266 EGELMQLTRKGVLRCKFVSVYINKKSQVIVKLKSK 300
           EG + +L  KG+  C +++ YI +KS V  +L+ K
Sbjct: 329 EGXIRRLKAKGLKICVWINPYIGQKSPVFKELQEK 363


>pdb|1V5U|A Chain A, Solution Structure Of The C-Terminal Pleckstrin Homology
           Domain Of Sbf1 From Mouse
          Length = 117

 Score = 28.1 bits (61), Expect = 9.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 330 REISEEVYFGLKTAQGLLEFKCKSKIHKQRWVDGIQNLL 368
           + + E+ +F +KT + +  F  +     Q+WVD IQ+ L
Sbjct: 72  KTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCL 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.128    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,102,938
Number of Sequences: 62578
Number of extensions: 234672
Number of successful extensions: 564
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 560
Number of HSP's gapped (non-prelim): 4
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)