BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016373
         (390 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A4Q9F6|TTL13_MOUSE Tubulin polyglutamylase TTLL13 OS=Mus musculus GN=Ttll13 PE=2 SV=1
          Length = 804

 Score = 33.9 bits (76), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 17/146 (11%)

Query: 26  LRAASSLPLIPQPQTPKEPMEFLSRSWSLSASEISKALAQKQKQLLLDQNFNAMPETLHG 85
           LR A+S  + P    P  P E + R      S I+ A+AQ  +  L  +NFN + ++   
Sbjct: 657 LRGAASEQIPPHFLQPLRPHELIPRILG-PLSSINPAIAQHSRYHLQPKNFNWIGDS--- 712

Query: 86  SQISASIVNSINARRTGSIGKWFHHHRELSTSKVKKKDRARVENARMHSALSVAGLAAAL 145
              +A+   S++ +++G       H+  +S+S+V+   R R      HS  +  GL + L
Sbjct: 713 ---AATGPCSLSMKKSG------RHY--ISSSRVRLTSRKR--RKAQHSTKTANGLQSLL 759

Query: 146 AAVAAAAGKSDSSGSKMSMALSSATE 171
                 + +  SSG  + +  +  TE
Sbjct: 760 IERLPTSSRLKSSGQDLCLQKAKNTE 785


>sp|Q91AV1|SPIKE_PEDV7 Spike glycoprotein OS=Porcine epidemic diarrhea virus (strain CV777)
            GN=S PE=3 SV=1
          Length = 1383

 Score = 33.5 bits (75), Expect = 2.9,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 85/225 (37%), Gaps = 22/225 (9%)

Query: 24   GELRAASSLP-----------LIPQPQTPKEPMEFLSRSWSLSASEISKALAQKQKQLLL 72
            G + AA++LP           L  Q    +   + L+ S++ +   I+ A    ++ +  
Sbjct: 961  GGITAAAALPFSYAVQARLNYLALQTDVLQRNQQLLAESFNSAIGNITSAFESVKEAI-- 1018

Query: 73   DQNFNAMPETLHGSQISASIVNSINARRTGSIGKWFHHHRELSTSKVKKKDRARVENARM 132
             Q    +    H       +VNS  +       +  H+ + +S+S      R  + +A +
Sbjct: 1019 SQTSKGLNTVAHALTKVQEVVNSQGSALNQLTVQLQHNFQAISSSIDDIYSRLDILSADV 1078

Query: 133  HSALSVAGLAAALAA-VAAAAGKSDSSGSKMSMALSSATELLASHCIELAESAGADHDRV 191
                 + G  +AL A VA    K     +   +A     E + S         G D + +
Sbjct: 1079 QVDRLITGRLSALNAFVAQTLTKYTEVQASRKLAQQKVNECVKSQSQRYG-FCGGDGEHI 1137

Query: 192  ASVVRSAVD-------IQTPGDLMTLTAAAATALRGEAALKARLP 229
             S+V++A         +  PGD + + A A   + GE AL  R P
Sbjct: 1138 FSLVQAAPQGLLFLHTVLVPGDFVNVLAIAGLCVNGEIALTLREP 1182


>sp|Q3SKJ2|PIMT_THIDA Protein-L-isoaspartate O-methyltransferase OS=Thiobacillus
           denitrificans (strain ATCC 25259) GN=pcm PE=3 SV=1
          Length = 226

 Score = 32.7 bits (73), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 32/70 (45%)

Query: 104 IGKWFHHHRELSTSKVKKKDRARVENARMHSALSVAGLAAALAAVAAAAGKSDSSGSKMS 163
           +GK     REL  + VK K    +  AR  +      LAAA A V  A     + G ++ 
Sbjct: 129 VGKTRARLRELRVNNVKPKHGDGMNGARDFAPFDAIVLAAAFAEVPQALLAQLADGGRLV 188

Query: 164 MALSSATELL 173
           M L +AT+ L
Sbjct: 189 MPLGNATQTL 198


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.125    0.351 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,890,093
Number of Sequences: 539616
Number of extensions: 4604399
Number of successful extensions: 14244
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 13945
Number of HSP's gapped (non-prelim): 312
length of query: 390
length of database: 191,569,459
effective HSP length: 119
effective length of query: 271
effective length of database: 127,355,155
effective search space: 34513247005
effective search space used: 34513247005
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)