BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016374
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
From E.Coli
Length = 451
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 94/238 (39%), Gaps = 27/238 (11%)
Query: 158 KAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI 217
+ + + D AE++L K I +L +W + +++ +
Sbjct: 220 EEYKNDYPDDYNEKAEQELTA---------KQIFMQYVLPNKLLWYIAIANVFVYLLRYG 270
Query: 218 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV-----SKGLSVTTV 272
+L W PTY +V HF L +S L L GW++D + + G+ T+
Sbjct: 271 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330
Query: 273 RKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ-DIAPRY-S 330
I + ++ PA +P + ++CM G + L H ++AP+ +
Sbjct: 331 VTIATIVYWMNPA---------GNPTVDMICMIVI-GFLIYGPVMLIGLHALELAPKKAA 380
Query: 331 GVLLGLSNTAGVLAG-VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEK 387
G G + G L G V +A GY + WD F V +G ++ + + GEK
Sbjct: 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 438
>pdb|3O7P|A Chain A, Crystal Structure Of The E.Coli Fucose:proton Symporter,
Fucp (N162a)
Length = 438
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 20 GLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT-PVAAKLGLPFLLVV 78
GLIQS+F++GY + I GI + KA + G+ +++ AL P A + LV
Sbjct: 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG 123
Query: 79 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI 132
+ G G A N ++ P + L L + G++ + F LI
Sbjct: 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFASFGAIIAVVFGQSLI 177
>pdb|3O7Q|A Chain A, Crystal Structure Of A Major Facilitator Superfamily (Mfs)
Transporter, Fucp, In The Outward Conformation
Length = 438
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 20 GLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT-PVAAKLGLPFLLVV 78
GLIQS+F++GY + I GI + KA + G+ +++ AL P A + LV
Sbjct: 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG 123
Query: 79 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI 132
+ G G A N ++ P + L L + G++ + F LI
Sbjct: 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177
>pdb|3CSQ|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSQ|B Chain B, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSQ|C Chain C, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSQ|D Chain D, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
Length = 334
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 35 IAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFL----LVVRVFMGIGEGVAM 90
I G+W + G LGFG+V W+ A+ A GLP+ + R+ +
Sbjct: 48 INPGLWQNLDEGNTSLGFGLVQWTPASNYINWANSQGLPYKNMDSELKRIIWEVNNNAQW 107
Query: 91 PAMNNI-LSKWVPVAERSRSLALVYSGMY 118
+ ++ +++ + R LA+++ Y
Sbjct: 108 INLRDMTFKEYIKSTKTPRELAMIFLASY 136
>pdb|3CSR|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSZ|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CT0|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CT1|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CT5|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
Length = 159
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 35 IAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFL----LVVRVFMGIGEGVAM 90
I G+W + G LGFG+V W+ A+ A GLP+ + R+ +
Sbjct: 48 INPGLWQNLDEGNTSLGFGLVQWTPASNYINWANSQGLPYKNMDSELKRIIWEVNNNAQW 107
Query: 91 PAMNNI-LSKWVPVAERSRSLALVYSGMY 118
+ ++ +++ + R LA+++ Y
Sbjct: 108 INLRDMTFKEYIKSTKTPRELAMIFLASY 136
>pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
Length = 485
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 294 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV------- 346
D+ + AVL A + D F G + +APR+ G + + G+LA
Sbjct: 87 TDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMI 146
Query: 347 ---FGTA-ATGYILQH---GSWDDVFKVSVGLYLVGTAVWNL 381
FGT+ T LQ+ ++DD + YL V N+
Sbjct: 147 EKPFGTSYDTAAELQNDLENAFDDNQLFRINHYLGKEMVQNI 188
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose
6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides
With Nadp+
Length = 485
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 294 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV------- 346
D+ + AVL A + D F G + +APR+ G + + G+LA
Sbjct: 87 TDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMI 146
Query: 347 ---FGTA-ATGYILQH---GSWDDVFKVSVGLYLVGTAVWNL 381
FGT+ T LQ+ ++DD + YL V N+
Sbjct: 147 EKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNI 188
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 294 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV------- 346
D+ + AVL A + D F G + +APR+ G + + G+LA
Sbjct: 87 TDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMI 146
Query: 347 ---FGTA-ATGYILQH---GSWDDVFKVSVGLYLVGTAVWNL 381
FGT+ T LQ+ ++DD + YL V N+
Sbjct: 147 EKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNI 188
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 294 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV------- 346
D+ + AVL A + D F G + +APR+ G + + G+LA
Sbjct: 87 TDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMI 146
Query: 347 ---FGTA-ATGYILQH---GSWDDVFKVSVGLYLVGTAVWNL 381
FGT+ T LQ+ ++DD + YL V N+
Sbjct: 147 EKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNI 188
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 294 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV------- 346
D+ + AVL A + D F G + +APR+ G + + G+LA
Sbjct: 87 TDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMI 146
Query: 347 ---FGTA-ATGYILQH---GSWDDVFKVSVGLYLVGTAVWNL 381
FGT+ T LQ+ ++DD + YL V N+
Sbjct: 147 EKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNI 188
>pdb|4H0A|A Chain A, Crystal Structure Of A Hypothetical Protein (Sav1118) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.90 A
Resolution
pdb|4H0A|B Chain B, Crystal Structure Of A Hypothetical Protein (Sav1118) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.90 A
Resolution
Length = 323
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 342 VLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT---AVWNLFSTGEKV 388
VL FG A Y + G + VFK Y+V T + ++++TGEKV
Sbjct: 51 VLTSKFGQADRVYPFRDGYKNYVFKDKNSYYIVSTKREEIVSVYATGEKV 100
>pdb|2V5D|A Chain A, Structure Of A Family 84 Glycoside Hydrolase And A Family
32 Carbohydrate-Binding Module In Tandem From
Clostridium Perfringens
Length = 737
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 138 PSVFYSFGSLGTVWFTVWLSKAHSSP 163
P+ F S G + T W + W S AH P
Sbjct: 614 PASFASDGDMNTFWHSKWSSPAHEGP 639
>pdb|2IUM|A Chain A, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUM|B Chain B, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUM|C Chain C, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUN|A Chain A, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|B Chain B, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|C Chain C, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|D Chain D, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|E Chain E, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|F Chain F, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
Length = 248
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 120 GSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT-----VWLSKAHSSPAEDPQLRPAEK 174
G+ T L FSP + +G + + S+ + W+ V +K H P QL+ A
Sbjct: 134 GATTAL-FSP---NPYGSLNTITTLPSIASDWYVPESNLVTYTKIHFKPTGSQQLQLASG 189
Query: 175 KLIVSSCASKEPVKTIPWGLI 195
+L+V+ A+K PV+T + LI
Sbjct: 190 ELVVA--AAKSPVQTTKYELI 208
>pdb|2J1A|A Chain A, Structure Of Cbm32 From Clostridium Perfringens Beta-N-
Acetylhexosaminidase Gh84c In Complex With Galactose
pdb|2J1E|A Chain A, High Resolution Crystal Structure Of Cbm32 From A
N-Acetyl- Beta-Hexosaminidase In Complex With Lacnac
Length = 150
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 138 PSVFYSFGSLGTVWFTVWLSKAHSSP 163
P+ F S G + T W + W S AH P
Sbjct: 27 PASFASDGDMNTFWHSKWSSPAHEGP 52
>pdb|2J7M|A Chain A, Characterization Of A Family 32 Cbm
Length = 149
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 138 PSVFYSFGSLGTVWFTVWLSKAHSSP 163
P+ F S G + T W + W S AH P
Sbjct: 26 PASFASDGDMNTFWHSKWSSPAHEGP 51
>pdb|1Z7L|A Chain A, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|B Chain B, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|C Chain C, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
Length = 276
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 173 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGT 215
E+ L ++ E ++ + L+L +P W V+ CH+W T
Sbjct: 59 ERTLRLAGTQPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHT 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,766,170
Number of Sequences: 62578
Number of extensions: 483360
Number of successful extensions: 1464
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1449
Number of HSP's gapped (non-prelim): 21
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)