Query 016375
Match_columns 390
No_of_seqs 149 out of 1502
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 06:17:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 6.4E-65 1.4E-69 419.6 31.2 378 2-385 55-432 (476)
2 PRK04837 ATP-dependent RNA hel 100.0 1.7E-58 3.7E-63 420.1 40.7 377 6-383 6-385 (423)
3 PRK10590 ATP-dependent RNA hel 100.0 2E-58 4.2E-63 422.1 40.6 372 9-381 2-373 (456)
4 KOG0331 ATP-dependent RNA heli 100.0 3.7E-59 8E-64 410.3 34.1 370 9-379 92-467 (519)
5 PRK11776 ATP-dependent RNA hel 100.0 2.8E-57 6E-62 416.6 41.2 366 8-381 4-370 (460)
6 PRK04537 ATP-dependent RNA hel 100.0 1.8E-57 3.9E-62 422.5 40.1 375 8-382 9-386 (572)
7 PTZ00110 helicase; Provisional 100.0 2.4E-57 5.3E-62 420.4 39.9 375 4-380 126-504 (545)
8 PRK11634 ATP-dependent RNA hel 100.0 6.8E-57 1.5E-61 420.7 40.9 369 6-381 4-373 (629)
9 PRK11192 ATP-dependent RNA hel 100.0 1.9E-56 4E-61 408.9 42.1 370 9-381 2-373 (434)
10 PLN00206 DEAD-box ATP-dependen 100.0 2.4E-56 5.2E-61 412.9 40.0 374 4-379 117-494 (518)
11 PRK01297 ATP-dependent RNA hel 100.0 3.5E-55 7.5E-60 403.6 42.2 370 7-377 86-459 (475)
12 COG0513 SrmB Superfamily II DN 100.0 2.6E-55 5.6E-60 402.9 40.0 364 8-377 29-398 (513)
13 PTZ00424 helicase 45; Provisio 100.0 7.7E-55 1.7E-59 395.9 40.3 370 7-383 27-397 (401)
14 KOG0340 ATP-dependent RNA heli 100.0 5.4E-55 1.2E-59 356.7 28.9 374 4-383 3-384 (442)
15 KOG0328 Predicted ATP-dependen 100.0 1.2E-54 2.5E-59 344.2 27.0 371 5-382 24-395 (400)
16 KOG0333 U5 snRNP-like RNA heli 100.0 6.5E-54 1.4E-58 367.1 31.5 369 4-373 241-637 (673)
17 KOG0342 ATP-dependent RNA heli 100.0 1.3E-53 2.8E-58 363.1 31.7 369 8-381 82-455 (543)
18 KOG0343 RNA Helicase [RNA proc 100.0 7.3E-54 1.6E-58 368.9 29.2 375 6-383 67-445 (758)
19 KOG0338 ATP-dependent RNA heli 100.0 1.7E-53 3.7E-58 363.3 26.9 361 8-371 181-544 (691)
20 KOG0345 ATP-dependent RNA heli 100.0 2.6E-52 5.6E-57 352.9 32.5 373 8-381 4-385 (567)
21 KOG0326 ATP-dependent RNA heli 100.0 1.6E-53 3.4E-58 343.5 20.0 365 8-380 85-449 (459)
22 KOG0335 ATP-dependent RNA heli 100.0 1.5E-50 3.3E-55 349.8 28.2 369 6-375 72-459 (482)
23 KOG0346 RNA helicase [RNA proc 100.0 8.1E-50 1.8E-54 335.1 28.5 366 7-372 18-422 (569)
24 TIGR03817 DECH_helic helicase/ 100.0 1.3E-48 2.9E-53 372.1 36.7 353 15-382 21-410 (742)
25 KOG0336 ATP-dependent RNA heli 100.0 1.3E-49 2.8E-54 331.2 24.2 366 13-380 225-592 (629)
26 KOG0348 ATP-dependent RNA heli 100.0 2.1E-48 4.5E-53 334.1 28.1 364 8-371 136-565 (708)
27 TIGR00614 recQ_fam ATP-depende 100.0 6.5E-47 1.4E-51 347.1 32.9 322 25-368 6-341 (470)
28 KOG0339 ATP-dependent RNA heli 100.0 4.9E-47 1.1E-51 323.7 29.3 375 3-379 218-594 (731)
29 KOG0341 DEAD-box protein abstr 100.0 8E-49 1.7E-53 324.4 17.3 366 5-372 167-541 (610)
30 PLN03137 ATP-dependent DNA hel 100.0 2.1E-46 4.4E-51 355.5 35.5 341 7-369 434-796 (1195)
31 KOG0334 RNA helicase [RNA proc 100.0 7.3E-47 1.6E-51 349.8 26.5 372 4-376 361-736 (997)
32 KOG0347 RNA helicase [RNA proc 100.0 2.2E-47 4.7E-52 328.9 21.1 369 7-376 180-586 (731)
33 PRK11057 ATP-dependent DNA hel 100.0 1.5E-45 3.2E-50 346.6 35.2 332 14-368 8-351 (607)
34 KOG0327 Translation initiation 100.0 3.8E-46 8.3E-51 309.0 26.1 369 7-384 25-394 (397)
35 TIGR01389 recQ ATP-dependent D 100.0 9.5E-45 2.1E-49 342.5 34.4 323 22-367 4-338 (591)
36 KOG0350 DEAD-box ATP-dependent 100.0 2.1E-45 4.5E-50 313.3 26.1 364 6-374 125-554 (620)
37 KOG0332 ATP-dependent RNA heli 100.0 4.2E-45 9E-50 300.7 24.6 367 7-382 89-466 (477)
38 KOG4284 DEAD box protein [Tran 100.0 1.9E-45 4.1E-50 322.5 22.6 351 4-362 21-381 (980)
39 KOG0337 ATP-dependent RNA heli 100.0 1E-44 2.2E-49 302.9 23.3 366 8-379 21-387 (529)
40 PRK02362 ski2-like helicase; P 100.0 5.4E-43 1.2E-47 337.5 33.8 337 9-360 2-397 (737)
41 COG1111 MPH1 ERCC4-like helica 100.0 2.1E-42 4.6E-47 297.0 32.2 323 29-363 14-484 (542)
42 PRK13767 ATP-dependent helicas 100.0 9E-43 2E-47 338.7 33.9 359 15-378 18-418 (876)
43 TIGR00580 mfd transcription-re 100.0 1.3E-41 2.8E-46 327.1 35.6 333 13-371 434-787 (926)
44 PRK00254 ski2-like helicase; P 100.0 1.1E-41 2.3E-46 327.7 33.7 335 9-361 2-389 (720)
45 COG1201 Lhr Lhr-like helicases 100.0 2.8E-41 6.1E-46 314.2 32.7 335 15-359 8-361 (814)
46 COG0514 RecQ Superfamily II DN 100.0 8.4E-42 1.8E-46 306.6 27.1 329 19-371 5-348 (590)
47 PRK10689 transcription-repair 100.0 2.3E-40 4.9E-45 325.2 36.3 331 15-371 586-936 (1147)
48 PRK10917 ATP-dependent DNA hel 100.0 9.4E-40 2E-44 310.5 37.0 329 17-370 249-603 (681)
49 TIGR00643 recG ATP-dependent D 100.0 1.3E-39 2.8E-44 307.8 36.1 317 17-357 223-563 (630)
50 PRK01172 ski2-like helicase; P 100.0 4.3E-40 9.3E-45 315.5 31.9 333 9-360 2-378 (674)
51 KOG0344 ATP-dependent RNA heli 100.0 2.1E-40 4.6E-45 289.1 24.0 358 15-373 143-508 (593)
52 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9.9E-39 2.1E-43 298.9 31.7 326 17-357 2-388 (844)
53 PHA02558 uvsW UvsW helicase; P 100.0 4.6E-39 1E-43 296.7 28.1 307 29-359 113-454 (501)
54 PRK09751 putative ATP-dependen 100.0 1.8E-37 3.8E-42 306.6 32.8 328 50-380 1-407 (1490)
55 PRK09401 reverse gyrase; Revie 100.0 8.5E-37 1.9E-41 300.8 36.1 291 18-332 68-410 (1176)
56 TIGR00603 rad25 DNA repair hel 100.0 6.9E-38 1.5E-42 290.3 26.3 311 30-368 255-615 (732)
57 COG1202 Superfamily II helicas 100.0 5.3E-38 1.1E-42 272.7 23.8 339 9-364 195-557 (830)
58 KOG0354 DEAD-box like helicase 100.0 3.3E-37 7.2E-42 280.3 26.9 320 30-361 62-530 (746)
59 PRK13766 Hef nuclease; Provisi 100.0 1.7E-35 3.6E-40 289.2 35.9 322 29-362 14-481 (773)
60 COG1205 Distinct helicase fami 100.0 3.4E-36 7.3E-41 288.0 30.0 360 17-385 57-452 (851)
61 PHA02653 RNA helicase NPH-II; 100.0 5.8E-36 1.3E-40 278.8 29.9 317 32-368 166-522 (675)
62 PRK14701 reverse gyrase; Provi 100.0 2.2E-35 4.7E-40 296.8 31.2 328 17-366 66-462 (1638)
63 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.8E-35 1.5E-39 278.1 32.9 308 32-364 4-340 (819)
64 PRK11664 ATP-dependent RNA hel 100.0 5E-35 1.1E-39 279.7 29.2 308 32-364 7-343 (812)
65 COG1204 Superfamily II helicas 100.0 9.2E-35 2E-39 274.4 28.7 339 12-364 13-413 (766)
66 TIGR01587 cas3_core CRISPR-ass 100.0 1.9E-35 4.1E-40 264.4 22.9 300 47-361 1-337 (358)
67 PRK12898 secA preprotein trans 100.0 3.8E-34 8.2E-39 262.5 30.4 320 25-362 99-588 (656)
68 COG1200 RecG RecG-like helicas 100.0 3.4E-34 7.5E-39 257.0 29.0 324 13-361 245-592 (677)
69 TIGR03714 secA2 accessory Sec 100.0 2.7E-34 5.7E-39 266.6 29.2 318 31-362 69-539 (762)
70 COG1061 SSL2 DNA or RNA helica 100.0 1.2E-34 2.6E-39 262.0 24.9 292 30-347 36-376 (442)
71 KOG0351 ATP-dependent DNA heli 100.0 1.1E-34 2.3E-39 275.8 24.8 324 23-368 257-600 (941)
72 PRK09200 preprotein translocas 100.0 1.1E-33 2.5E-38 264.9 31.1 320 25-362 74-543 (790)
73 KOG0329 ATP-dependent RNA heli 100.0 4.8E-35 1E-39 229.6 14.6 330 9-380 43-376 (387)
74 TIGR00963 secA preprotein tran 100.0 5.3E-33 1.2E-37 256.3 30.4 320 25-362 52-519 (745)
75 PRK04914 ATP-dependent helicas 100.0 2.5E-33 5.5E-38 268.9 29.3 333 30-374 152-617 (956)
76 TIGR03158 cas3_cyano CRISPR-as 100.0 6.3E-33 1.4E-37 245.0 29.6 290 34-345 1-357 (357)
77 KOG0352 ATP-dependent DNA heli 100.0 1.1E-33 2.5E-38 237.5 19.8 331 18-366 6-368 (641)
78 KOG0353 ATP-dependent DNA heli 100.0 5.1E-33 1.1E-37 230.7 20.9 332 11-364 74-471 (695)
79 TIGR01054 rgy reverse gyrase. 100.0 5.6E-32 1.2E-36 267.2 31.8 292 17-332 65-409 (1171)
80 COG1197 Mfd Transcription-repa 100.0 9.9E-31 2.1E-35 247.7 29.5 333 12-370 576-929 (1139)
81 KOG0952 DNA/RNA helicase MER3/ 100.0 3.2E-31 7E-36 245.0 24.8 338 26-368 106-499 (1230)
82 cd00268 DEADc DEAD-box helicas 100.0 1.2E-30 2.7E-35 214.6 24.5 202 10-216 1-202 (203)
83 PRK05580 primosome assembly pr 100.0 1E-29 2.3E-34 241.0 32.7 307 30-361 144-550 (679)
84 PLN03142 Probable chromatin-re 100.0 2.4E-30 5.2E-35 249.3 27.3 318 30-362 169-601 (1033)
85 PRK11131 ATP-dependent RNA hel 100.0 3.3E-30 7.2E-35 251.1 27.7 303 32-365 76-416 (1294)
86 COG4098 comFA Superfamily II D 100.0 4.1E-29 8.9E-34 204.7 28.1 306 30-365 97-421 (441)
87 PRK09694 helicase Cas3; Provis 100.0 1.4E-29 3.1E-34 241.7 29.1 310 29-349 285-664 (878)
88 PRK11448 hsdR type I restricti 100.0 1.2E-29 2.6E-34 249.1 28.6 307 30-349 413-802 (1123)
89 TIGR00595 priA primosomal prot 100.0 4.1E-29 8.8E-34 228.7 29.0 288 49-359 1-380 (505)
90 KOG0385 Chromatin remodeling c 100.0 4.9E-29 1.1E-33 223.7 24.9 317 30-364 167-603 (971)
91 PRK13104 secA preprotein trans 100.0 2E-28 4.2E-33 229.5 28.3 319 26-362 79-589 (896)
92 PRK12904 preprotein translocas 100.0 1.1E-27 2.3E-32 224.3 29.7 320 25-362 77-575 (830)
93 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.9E-28 6.3E-33 238.5 26.9 308 32-365 69-409 (1283)
94 PRK12906 secA preprotein trans 100.0 6.4E-28 1.4E-32 224.9 27.3 320 25-362 76-555 (796)
95 KOG0947 Cytoplasmic exosomal R 100.0 5.9E-28 1.3E-32 221.3 24.2 324 24-371 292-733 (1248)
96 KOG0384 Chromodomain-helicase 100.0 4.2E-28 9.2E-33 227.6 17.9 332 29-377 369-830 (1373)
97 KOG0948 Nuclear exosomal RNA h 100.0 5.4E-28 1.2E-32 216.4 17.5 311 26-359 126-538 (1041)
98 KOG0349 Putative DEAD-box RNA 100.0 1.8E-27 3.9E-32 200.9 19.1 275 83-358 287-613 (725)
99 PRK12899 secA preprotein trans 100.0 1.1E-25 2.3E-30 210.9 30.3 146 12-169 66-227 (970)
100 KOG0951 RNA helicase BRR2, DEA 100.0 2.6E-26 5.7E-31 215.7 23.8 335 27-367 306-709 (1674)
101 COG4581 Superfamily II RNA hel 100.0 3.9E-26 8.4E-31 216.6 25.0 320 21-359 111-536 (1041)
102 PRK13107 preprotein translocas 99.9 1.5E-25 3.3E-30 209.5 27.4 319 26-362 79-593 (908)
103 COG1110 Reverse gyrase [DNA re 99.9 3.3E-25 7.3E-30 205.5 26.6 288 18-331 70-416 (1187)
104 COG4096 HsdR Type I site-speci 99.9 4E-26 8.8E-31 208.2 20.0 297 27-347 162-525 (875)
105 KOG0387 Transcription-coupled 99.9 5.7E-25 1.2E-29 198.6 25.6 326 30-372 205-670 (923)
106 TIGR00348 hsdR type I site-spe 99.9 7.8E-25 1.7E-29 207.8 27.3 310 31-358 239-649 (667)
107 PF00270 DEAD: DEAD/DEAH box h 99.9 1.3E-25 2.7E-30 179.5 17.7 165 32-204 1-168 (169)
108 COG1203 CRISPR-associated heli 99.9 2.9E-25 6.2E-30 212.9 20.5 327 30-364 195-554 (733)
109 COG1643 HrpA HrpA-like helicas 99.9 1.6E-24 3.4E-29 204.4 24.0 311 30-363 50-390 (845)
110 COG0556 UvrB Helicase subunit 99.9 1.4E-23 3.1E-28 182.1 25.1 173 189-369 387-566 (663)
111 KOG0950 DNA polymerase theta/e 99.9 2E-24 4.4E-29 199.2 21.1 332 22-367 215-618 (1008)
112 KOG0922 DEAH-box RNA helicase 99.9 3.2E-24 7E-29 191.4 21.3 309 31-364 52-394 (674)
113 KOG1123 RNA polymerase II tran 99.9 1.3E-25 2.7E-30 193.0 11.6 314 29-369 301-662 (776)
114 KOG0389 SNF2 family DNA-depend 99.9 1.5E-24 3.1E-29 195.8 18.0 323 27-363 397-891 (941)
115 TIGR01407 dinG_rel DnaQ family 99.9 5.3E-23 1.2E-27 201.4 30.5 329 16-360 232-814 (850)
116 COG1198 PriA Primosomal protei 99.9 2.7E-23 5.8E-28 193.2 26.0 309 30-362 198-605 (730)
117 KOG0392 SNF2 family DNA-depend 99.9 1.1E-23 2.4E-28 197.8 23.2 325 31-364 976-1458(1549)
118 KOG0390 DNA repair protein, SN 99.9 2.4E-23 5.1E-28 192.5 24.9 326 30-364 238-711 (776)
119 KOG1000 Chromatin remodeling p 99.9 3.7E-23 8.1E-28 177.6 20.7 309 29-356 197-597 (689)
120 PRK12326 preprotein translocas 99.9 1.9E-22 4.1E-27 184.6 25.8 319 25-362 74-549 (764)
121 KOG0920 ATP-dependent RNA heli 99.9 6.2E-22 1.3E-26 186.3 25.1 353 14-384 157-571 (924)
122 KOG0923 mRNA splicing factor A 99.9 2.6E-22 5.7E-27 178.1 19.5 313 27-362 262-608 (902)
123 PRK12900 secA preprotein trans 99.9 1.2E-21 2.7E-26 184.4 23.2 168 191-362 536-713 (1025)
124 PRK13103 secA preprotein trans 99.9 2.9E-21 6.3E-26 181.2 24.8 317 26-361 79-592 (913)
125 TIGR00631 uvrb excinuclease AB 99.9 1.1E-20 2.4E-25 177.5 28.0 131 240-371 427-564 (655)
126 PRK07246 bifunctional ATP-depe 99.9 1.8E-20 3.9E-25 181.2 29.9 315 26-360 242-783 (820)
127 COG4889 Predicted helicase [Ge 99.9 2.2E-23 4.7E-28 190.1 8.7 327 8-348 140-573 (1518)
128 smart00487 DEXDc DEAD-like hel 99.9 1E-20 2.2E-25 155.6 20.7 187 25-219 3-191 (201)
129 PRK08074 bifunctional ATP-depe 99.9 8.7E-20 1.9E-24 179.6 29.3 109 252-360 751-893 (928)
130 PRK12903 secA preprotein trans 99.9 8.3E-20 1.8E-24 169.9 24.2 317 26-361 75-540 (925)
131 KOG0924 mRNA splicing factor A 99.9 1.1E-19 2.4E-24 162.0 22.5 308 27-361 353-698 (1042)
132 PRK05298 excinuclease ABC subu 99.9 2.4E-19 5.2E-24 169.9 25.6 139 241-380 432-586 (652)
133 KOG0925 mRNA splicing factor A 99.9 2.8E-20 6E-25 159.8 17.3 329 4-361 21-388 (699)
134 KOG0391 SNF2 family DNA-depend 99.9 1.3E-19 2.8E-24 169.7 22.3 126 238-363 1259-1390(1958)
135 CHL00122 secA preprotein trans 99.8 8.6E-19 1.9E-23 164.1 26.5 276 25-319 72-490 (870)
136 KOG0949 Predicted helicase, DE 99.8 1.4E-19 3.1E-24 167.3 20.8 160 30-200 511-673 (1330)
137 KOG0926 DEAH-box RNA helicase 99.8 4.3E-19 9.3E-24 161.0 19.2 313 33-361 259-705 (1172)
138 KOG0388 SNF2 family DNA-depend 99.8 2.9E-18 6.3E-23 153.7 22.1 126 238-363 1027-1157(1185)
139 KOG0386 Chromatin remodeling c 99.8 1.3E-19 2.7E-24 168.2 13.8 312 30-357 394-833 (1157)
140 KOG0953 Mitochondrial RNA heli 99.8 1.1E-18 2.3E-23 152.5 17.1 280 46-377 192-490 (700)
141 PRK12902 secA preprotein trans 99.8 4.8E-17 1E-21 152.3 28.1 275 26-319 82-505 (939)
142 PF04851 ResIII: Type III rest 99.8 3E-19 6.6E-24 144.7 12.0 154 30-200 3-184 (184)
143 KOG4150 Predicted ATP-dependen 99.8 1.1E-18 2.3E-23 153.1 14.2 358 19-384 275-666 (1034)
144 PRK11747 dinG ATP-dependent DN 99.8 5.1E-16 1.1E-20 148.5 33.7 105 252-360 533-674 (697)
145 TIGR03117 cas_csf4 CRISPR-asso 99.8 2.7E-16 5.9E-21 145.8 30.7 107 252-360 469-616 (636)
146 cd00046 DEXDc DEAD-like helica 99.8 9.3E-18 2E-22 130.0 16.7 144 46-198 1-144 (144)
147 COG1199 DinG Rad3-related DNA 99.8 1.1E-16 2.3E-21 154.4 27.5 107 252-361 478-618 (654)
148 cd00079 HELICc Helicase superf 99.8 3.9E-18 8.5E-23 130.0 13.1 118 239-356 12-131 (131)
149 KOG4439 RNA polymerase II tran 99.8 4.8E-17 1E-21 145.9 20.7 111 252-362 745-860 (901)
150 KOG1002 Nucleotide excision re 99.8 4.1E-17 8.9E-22 140.9 17.6 112 252-363 637-752 (791)
151 TIGR00604 rad3 DNA repair heli 99.8 5.3E-16 1.2E-20 149.6 27.5 74 26-105 6-83 (705)
152 PF00271 Helicase_C: Helicase 99.7 5.1E-18 1.1E-22 116.1 6.9 78 271-348 1-78 (78)
153 KOG1015 Transcription regulato 99.7 2.1E-16 4.6E-21 146.0 17.3 119 238-356 1125-1271(1567)
154 PF02399 Herpes_ori_bp: Origin 99.7 1.1E-15 2.4E-20 141.8 22.2 288 46-359 50-387 (824)
155 PRK12901 secA preprotein trans 99.7 1.7E-15 3.6E-20 143.7 23.5 167 191-361 566-742 (1112)
156 PRK14873 primosome assembly pr 99.7 5.4E-14 1.2E-18 132.4 25.1 284 49-361 164-540 (665)
157 TIGR02562 cas3_yersinia CRISPR 99.6 1.8E-14 4E-19 137.3 19.4 334 21-365 399-899 (1110)
158 COG0610 Type I site-specific r 99.6 7.4E-14 1.6E-18 137.3 23.3 309 46-372 274-663 (962)
159 PF06862 DUF1253: Protein of u 99.6 8.2E-13 1.8E-17 116.8 27.2 287 81-368 36-423 (442)
160 smart00490 HELICc helicase sup 99.6 2.4E-15 5.3E-20 104.2 7.6 81 268-348 2-82 (82)
161 COG0553 HepA Superfamily II DN 99.6 8.8E-14 1.9E-18 139.8 21.9 323 29-361 337-823 (866)
162 PF00176 SNF2_N: SNF2 family N 99.6 3.6E-14 7.8E-19 124.3 13.3 157 34-201 1-175 (299)
163 KOG0951 RNA helicase BRR2, DEA 99.6 4.1E-13 9E-18 128.2 19.7 308 31-367 1144-1501(1674)
164 PF07652 Flavi_DEAD: Flaviviru 99.5 5.4E-14 1.2E-18 103.4 10.3 136 44-203 3-141 (148)
165 COG0653 SecA Preprotein transl 99.5 1.2E-12 2.5E-17 122.8 17.1 315 31-360 79-545 (822)
166 smart00488 DEXDc2 DEAD-like he 99.4 3.5E-12 7.7E-17 109.4 12.7 76 26-105 5-84 (289)
167 smart00489 DEXDc3 DEAD-like he 99.4 3.5E-12 7.7E-17 109.4 12.7 76 26-105 5-84 (289)
168 KOG1016 Predicted DNA helicase 99.4 1.9E-11 4.2E-16 111.7 17.2 107 252-358 718-845 (1387)
169 KOG2340 Uncharacterized conser 99.4 6.4E-11 1.4E-15 103.9 16.9 340 28-368 214-676 (698)
170 COG3587 Restriction endonuclea 99.1 3.7E-09 8.1E-14 98.4 17.3 71 302-372 482-565 (985)
171 KOG1133 Helicase of the DEAD s 99.1 2.1E-07 4.6E-12 85.0 27.8 105 253-360 629-780 (821)
172 PF13872 AAA_34: P-loop contai 99.0 9.1E-09 2E-13 86.1 13.6 160 30-203 37-225 (303)
173 PF07517 SecA_DEAD: SecA DEAD- 99.0 7.8E-09 1.7E-13 86.4 13.0 132 25-170 73-210 (266)
174 PRK15483 type III restriction- 99.0 7.4E-09 1.6E-13 100.0 14.1 144 46-200 60-240 (986)
175 KOG0921 Dosage compensation co 98.9 1.4E-08 3.1E-13 94.8 12.4 319 22-359 370-773 (1282)
176 KOG1802 RNA helicase nonsense 98.9 2.7E-08 5.8E-13 90.2 11.2 76 23-106 403-478 (935)
177 PF13086 AAA_11: AAA domain; P 98.9 1.2E-08 2.5E-13 86.1 8.7 73 31-104 2-75 (236)
178 KOG1001 Helicase-like transcri 98.8 1.1E-08 2.3E-13 96.5 8.7 102 254-355 540-643 (674)
179 KOG1131 RNA polymerase II tran 98.8 1.3E-06 2.9E-11 77.3 20.6 74 26-104 12-89 (755)
180 PF13307 Helicase_C_2: Helicas 98.8 1.5E-08 3.2E-13 79.9 7.5 109 252-362 8-152 (167)
181 KOG0952 DNA/RNA helicase MER3/ 98.6 1.9E-08 4.1E-13 95.7 3.6 258 32-305 929-1207(1230)
182 PF13604 AAA_30: AAA domain; P 98.6 3.2E-07 6.8E-12 74.4 10.1 63 30-101 1-65 (196)
183 PF02562 PhoH: PhoH-like prote 98.6 6.2E-08 1.4E-12 77.6 5.0 142 29-197 3-155 (205)
184 KOG1803 DNA helicase [Replicat 98.5 9.2E-07 2E-11 80.0 10.1 64 30-102 185-249 (649)
185 KOG1132 Helicase of the DEAD s 98.5 1.4E-06 3.1E-11 82.0 11.4 82 26-108 18-136 (945)
186 COG3421 Uncharacterized protei 98.5 3.6E-06 7.8E-11 76.1 13.2 114 50-171 2-126 (812)
187 TIGR00596 rad1 DNA repair prot 98.5 1.2E-05 2.5E-10 78.2 17.4 68 132-200 7-74 (814)
188 PF13245 AAA_19: Part of AAA d 98.4 2.2E-06 4.8E-11 57.2 7.6 53 45-102 10-62 (76)
189 TIGR01448 recD_rel helicase, p 98.4 7.6E-06 1.6E-10 79.5 13.9 130 25-197 319-452 (720)
190 TIGR00376 DNA helicase, putati 98.4 6.3E-06 1.4E-10 78.8 12.7 67 29-104 156-223 (637)
191 PRK10536 hypothetical protein; 98.4 9.8E-07 2.1E-11 72.8 6.2 61 26-93 55-115 (262)
192 PF09848 DUF2075: Uncharacteri 98.3 3E-06 6.5E-11 75.6 8.6 109 46-184 2-117 (352)
193 PRK10875 recD exonuclease V su 98.3 1.2E-05 2.7E-10 75.9 12.1 143 32-197 154-301 (615)
194 TIGR01447 recD exodeoxyribonuc 98.2 2E-05 4.3E-10 74.4 13.2 144 32-197 147-295 (586)
195 smart00492 HELICc3 helicase su 98.2 1.1E-05 2.3E-10 61.3 9.2 77 283-359 27-137 (141)
196 smart00491 HELICc2 helicase su 98.2 7.5E-06 1.6E-10 62.2 8.2 96 265-360 3-139 (142)
197 PF12340 DUF3638: Protein of u 98.1 3.3E-05 7.1E-10 62.7 9.2 110 27-146 21-144 (229)
198 KOG0989 Replication factor C, 98.1 1.3E-05 2.7E-10 66.9 6.7 47 153-200 125-171 (346)
199 KOG0298 DEAD box-containing he 98.0 2.4E-05 5.2E-10 76.8 8.3 158 45-207 374-559 (1394)
200 KOG0383 Predicted helicase [Ge 98.0 4.3E-07 9.2E-12 85.0 -3.3 64 252-316 630-696 (696)
201 KOG1805 DNA replication helica 98.0 6E-05 1.3E-09 72.2 10.5 130 28-171 667-810 (1100)
202 PF13401 AAA_22: AAA domain; P 97.9 7.3E-05 1.6E-09 56.4 8.9 37 159-198 89-125 (131)
203 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00026 5.7E-09 69.2 14.3 60 30-98 352-412 (744)
204 PRK13889 conjugal transfer rel 97.9 0.00023 5E-09 70.8 13.2 63 26-98 343-406 (988)
205 PRK06526 transposase; Provisio 97.8 0.00027 5.9E-09 59.6 10.9 24 41-64 94-117 (254)
206 PF00580 UvrD-helicase: UvrD/R 97.8 6E-05 1.3E-09 66.5 7.2 124 31-167 1-125 (315)
207 PRK08181 transposase; Validate 97.8 0.00043 9.3E-09 58.7 11.2 118 32-200 89-211 (269)
208 PRK13826 Dtr system oriT relax 97.7 0.001 2.3E-08 66.8 14.9 63 26-98 378-441 (1102)
209 PF13871 Helicase_C_4: Helicas 97.7 0.00012 2.6E-09 61.5 7.0 79 294-372 52-142 (278)
210 COG1875 NYN ribonuclease and A 97.7 0.0002 4.4E-09 61.5 8.0 65 25-95 223-289 (436)
211 PRK04296 thymidine kinase; Pro 97.7 0.00022 4.9E-09 57.5 7.8 35 47-90 4-38 (190)
212 PRK12723 flagellar biosynthesi 97.7 0.0006 1.3E-08 60.9 11.1 123 46-201 175-300 (388)
213 KOG1513 Nuclear helicase MOP-3 97.7 2.4E-05 5.2E-10 73.1 2.3 160 28-198 262-454 (1300)
214 PRK14722 flhF flagellar biosyn 97.6 0.00047 1E-08 61.1 9.6 130 45-209 137-269 (374)
215 PHA02533 17 large terminase pr 97.5 0.0013 2.9E-08 61.5 11.8 148 30-197 59-209 (534)
216 cd00009 AAA The AAA+ (ATPases 97.5 0.0015 3.3E-08 50.1 10.6 18 45-62 19-36 (151)
217 PF00448 SRP54: SRP54-type pro 97.5 0.0056 1.2E-07 49.5 13.8 49 156-204 82-131 (196)
218 TIGR01075 uvrD DNA helicase II 97.5 0.00068 1.5E-08 66.7 10.1 110 29-167 3-113 (715)
219 PRK14974 cell division protein 97.5 0.0036 7.9E-08 54.9 13.0 129 47-209 142-275 (336)
220 PRK11054 helD DNA helicase IV; 97.5 0.00063 1.4E-08 65.7 9.1 87 21-114 187-273 (684)
221 PRK11773 uvrD DNA-dependent he 97.4 0.00071 1.5E-08 66.5 9.4 110 29-167 8-118 (721)
222 COG1419 FlhF Flagellar GTP-bin 97.4 0.0028 6E-08 56.0 11.0 131 45-209 203-335 (407)
223 cd01120 RecA-like_NTPases RecA 97.4 0.0064 1.4E-07 47.6 12.5 38 48-94 2-39 (165)
224 PRK05642 DNA replication initi 97.4 0.00068 1.5E-08 56.7 7.1 44 157-200 97-141 (234)
225 smart00382 AAA ATPases associa 97.3 0.00071 1.5E-08 51.6 6.5 41 45-94 2-42 (148)
226 cd01124 KaiC KaiC is a circadi 97.3 0.0042 9.1E-08 50.1 11.1 49 48-106 2-50 (187)
227 PRK12377 putative replication 97.3 0.0029 6.3E-08 53.0 10.2 44 46-99 102-145 (248)
228 PF00308 Bac_DnaA: Bacterial d 97.3 0.0024 5.2E-08 52.8 9.5 106 47-201 36-143 (219)
229 PRK05703 flhF flagellar biosyn 97.2 0.0059 1.3E-07 55.7 12.4 130 45-209 221-354 (424)
230 PRK08084 DNA replication initi 97.2 0.0011 2.4E-08 55.5 7.1 43 158-200 98-142 (235)
231 PRK10919 ATP-dependent DNA hel 97.2 0.00091 2E-08 65.0 7.4 70 30-106 2-71 (672)
232 PHA03368 DNA packaging termina 97.2 0.0089 1.9E-07 56.3 13.1 134 45-199 254-391 (738)
233 PRK11889 flhF flagellar biosyn 97.2 0.0086 1.9E-07 53.2 12.4 128 46-209 242-374 (436)
234 COG2256 MGS1 ATPase related to 97.2 0.0024 5.1E-08 55.9 8.6 37 159-200 106-142 (436)
235 COG1484 DnaC DNA replication p 97.2 0.0012 2.7E-08 55.7 6.9 68 26-103 79-153 (254)
236 PRK07952 DNA replication prote 97.2 0.0093 2E-07 49.9 11.9 46 155-200 160-207 (244)
237 PF05970 PIF1: PIF1-like helic 97.2 0.0014 3E-08 58.8 7.5 57 31-96 2-64 (364)
238 PRK08116 hypothetical protein; 97.2 0.0055 1.2E-07 52.3 10.6 25 47-72 116-140 (268)
239 PRK06921 hypothetical protein; 97.2 0.012 2.5E-07 50.3 12.5 38 45-90 117-154 (266)
240 cd01122 GP4d_helicase GP4d_hel 97.1 0.0029 6.3E-08 54.5 9.0 59 37-104 22-80 (271)
241 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.0042 9.2E-08 51.8 9.7 42 158-199 91-133 (226)
242 PLN03025 replication factor C 97.1 0.0068 1.5E-07 53.4 11.4 38 157-195 99-136 (319)
243 PRK06893 DNA replication initi 97.1 0.0027 5.8E-08 53.0 8.4 45 156-200 90-136 (229)
244 PRK14958 DNA polymerase III su 97.1 0.0044 9.5E-08 57.9 10.4 39 156-195 118-156 (509)
245 TIGR02760 TraI_TIGR conjugativ 97.1 0.04 8.7E-07 60.0 18.7 63 30-101 429-493 (1960)
246 PF05496 RuvB_N: Holliday junc 97.1 0.00095 2.1E-08 54.1 5.1 17 46-62 51-67 (233)
247 PRK06835 DNA replication prote 97.1 0.0075 1.6E-07 52.9 11.1 43 45-97 183-225 (329)
248 PRK14964 DNA polymerase III su 97.1 0.0037 7.9E-08 57.7 9.3 19 46-64 36-54 (491)
249 PF13177 DNA_pol3_delta2: DNA 97.0 0.01 2.3E-07 46.4 10.5 49 156-205 101-149 (162)
250 PRK08727 hypothetical protein; 97.0 0.0035 7.6E-08 52.4 8.2 35 46-89 42-76 (233)
251 PRK00149 dnaA chromosomal repl 97.0 0.0056 1.2E-07 56.8 10.0 46 46-99 149-194 (450)
252 PRK12323 DNA polymerase III su 97.0 0.0044 9.6E-08 58.5 9.2 41 156-197 123-163 (700)
253 PRK14960 DNA polymerase III su 97.0 0.0033 7.2E-08 59.4 8.4 39 156-195 117-155 (702)
254 COG4626 Phage terminase-like p 97.0 0.017 3.7E-07 53.1 12.5 150 27-197 59-224 (546)
255 PRK14956 DNA polymerase III su 97.0 0.0048 1E-07 56.4 9.1 18 47-64 42-59 (484)
256 PRK07003 DNA polymerase III su 97.0 0.0056 1.2E-07 58.7 9.7 39 156-195 118-156 (830)
257 KOG0739 AAA+-type ATPase [Post 97.0 0.027 5.8E-07 47.5 12.4 122 47-221 168-301 (439)
258 PRK14087 dnaA chromosomal repl 97.0 0.0084 1.8E-07 55.3 10.6 108 46-200 142-250 (450)
259 KOG0991 Replication factor C, 96.9 0.0031 6.7E-08 50.9 6.6 45 155-200 111-155 (333)
260 PHA03333 putative ATPase subun 96.9 0.025 5.3E-07 53.7 13.2 56 44-107 186-241 (752)
261 TIGR01074 rep ATP-dependent DN 96.9 0.0029 6.4E-08 61.9 7.8 69 31-106 2-70 (664)
262 PRK05707 DNA polymerase III su 96.9 0.011 2.5E-07 51.9 10.5 35 30-64 3-41 (328)
263 PRK08903 DnaA regulatory inact 96.9 0.0095 2.1E-07 49.7 9.7 42 158-200 91-133 (227)
264 PF00004 AAA: ATPase family as 96.8 0.028 6E-07 42.2 11.1 15 48-62 1-15 (132)
265 PF03354 Terminase_1: Phage Te 96.8 0.011 2.3E-07 55.3 10.3 136 33-180 1-146 (477)
266 TIGR01547 phage_term_2 phage t 96.8 0.0093 2E-07 54.4 9.7 145 47-208 3-150 (396)
267 PHA02544 44 clamp loader, smal 96.8 0.01 2.2E-07 52.4 9.6 39 157-195 100-138 (316)
268 PRK08769 DNA polymerase III su 96.8 0.021 4.5E-07 49.9 10.9 148 29-202 3-157 (319)
269 COG1222 RPT1 ATP-dependent 26S 96.8 0.025 5.4E-07 49.0 11.0 57 3-62 143-202 (406)
270 TIGR00362 DnaA chromosomal rep 96.8 0.01 2.2E-07 54.3 9.6 37 47-90 138-174 (405)
271 PRK06645 DNA polymerase III su 96.8 0.014 3E-07 54.4 10.3 19 46-64 44-62 (507)
272 PRK12422 chromosomal replicati 96.7 0.011 2.4E-07 54.3 9.4 36 46-90 142-177 (445)
273 PRK14712 conjugal transfer nic 96.7 0.016 3.4E-07 60.8 11.1 64 30-98 835-900 (1623)
274 PRK07994 DNA polymerase III su 96.7 0.028 6E-07 53.9 12.0 38 156-194 118-155 (647)
275 KOG0652 26S proteasome regulat 96.7 0.017 3.6E-07 47.6 9.1 57 3-62 163-222 (424)
276 PRK00771 signal recognition pa 96.7 0.03 6.4E-07 51.2 11.7 51 158-208 176-227 (437)
277 PRK07764 DNA polymerase III su 96.7 0.01 2.2E-07 58.6 9.3 39 156-195 119-157 (824)
278 TIGR03499 FlhF flagellar biosy 96.7 0.0069 1.5E-07 52.2 7.3 19 46-64 195-213 (282)
279 PRK09183 transposase/IS protei 96.7 0.016 3.4E-07 49.3 9.3 24 42-65 99-122 (259)
280 PTZ00293 thymidine kinase; Pro 96.7 0.02 4.4E-07 46.4 9.3 39 45-92 4-42 (211)
281 COG1435 Tdk Thymidine kinase [ 96.6 0.032 6.9E-07 44.1 9.9 105 46-185 5-109 (201)
282 PRK04195 replication factor C 96.6 0.019 4.1E-07 53.8 10.4 18 45-62 39-56 (482)
283 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.016 3.5E-07 48.6 9.1 53 44-106 20-72 (237)
284 COG3973 Superfamily I DNA and 96.6 0.0053 1.1E-07 56.6 6.3 72 31-106 213-284 (747)
285 PRK14965 DNA polymerase III su 96.6 0.029 6.2E-07 53.6 11.5 40 155-195 117-156 (576)
286 PRK08691 DNA polymerase III su 96.6 0.013 2.9E-07 56.0 9.1 39 156-195 118-156 (709)
287 PRK07471 DNA polymerase III su 96.6 0.017 3.6E-07 51.7 9.2 44 155-199 139-182 (365)
288 KOG0738 AAA+-type ATPase [Post 96.6 0.016 3.6E-07 50.6 8.7 123 46-221 246-384 (491)
289 PF05876 Terminase_GpA: Phage 96.6 0.0071 1.5E-07 57.3 7.2 127 29-171 15-148 (557)
290 PRK12727 flagellar biosynthesi 96.6 0.037 8E-07 51.3 11.4 20 45-64 350-369 (559)
291 TIGR01073 pcrA ATP-dependent D 96.5 0.0063 1.4E-07 60.2 7.1 72 29-107 3-74 (726)
292 PRK12724 flagellar biosynthesi 96.5 0.058 1.2E-06 48.6 12.2 53 156-208 298-355 (432)
293 PRK14723 flhF flagellar biosyn 96.5 0.024 5.3E-07 55.0 10.5 129 46-209 186-317 (767)
294 PTZ00112 origin recognition co 96.5 0.078 1.7E-06 52.0 13.6 39 32-71 760-806 (1164)
295 PRK14951 DNA polymerase III su 96.5 0.015 3.1E-07 55.5 8.8 39 156-195 123-161 (618)
296 cd01121 Sms Sms (bacterial rad 96.5 0.04 8.6E-07 49.4 11.1 52 45-106 82-133 (372)
297 PF13173 AAA_14: AAA domain 96.5 0.041 8.9E-07 41.1 9.7 40 157-200 61-100 (128)
298 PRK05563 DNA polymerase III su 96.5 0.026 5.6E-07 53.7 10.4 19 46-64 39-57 (559)
299 PRK08533 flagellar accessory p 96.5 0.044 9.6E-07 45.7 10.6 54 43-106 22-75 (230)
300 PRK14949 DNA polymerase III su 96.5 0.023 4.9E-07 55.9 9.9 38 156-194 118-155 (944)
301 PRK06964 DNA polymerase III su 96.4 0.028 6E-07 49.6 9.7 36 31-66 2-42 (342)
302 PRK13342 recombination factor 96.4 0.042 9.2E-07 50.4 11.3 18 46-63 37-54 (413)
303 PRK14961 DNA polymerase III su 96.4 0.031 6.7E-07 50.2 10.2 38 156-194 118-155 (363)
304 PRK09111 DNA polymerase III su 96.4 0.023 5.1E-07 54.1 9.7 40 155-195 130-169 (598)
305 COG2805 PilT Tfp pilus assembl 96.4 0.01 2.3E-07 50.0 6.4 26 47-73 127-152 (353)
306 PF05621 TniB: Bacterial TniB 96.4 0.041 9E-07 47.0 9.9 54 46-104 62-118 (302)
307 PRK14086 dnaA chromosomal repl 96.4 0.026 5.6E-07 53.4 9.5 45 156-200 376-422 (617)
308 PRK14088 dnaA chromosomal repl 96.4 0.051 1.1E-06 50.1 11.4 38 46-90 131-168 (440)
309 PF06745 KaiC: KaiC; InterPro 96.4 0.015 3.2E-07 48.5 7.4 133 44-197 18-159 (226)
310 TIGR01425 SRP54_euk signal rec 96.4 0.059 1.3E-06 48.9 11.4 35 47-90 102-136 (429)
311 KOG0733 Nuclear AAA ATPase (VC 96.4 0.043 9.4E-07 51.0 10.5 49 155-203 602-660 (802)
312 PRK14952 DNA polymerase III su 96.4 0.026 5.5E-07 53.6 9.5 40 155-195 116-155 (584)
313 TIGR02881 spore_V_K stage V sp 96.3 0.018 3.8E-07 49.2 7.8 18 46-63 43-60 (261)
314 PRK13709 conjugal transfer nic 96.3 0.045 9.7E-07 58.3 12.0 64 30-98 967-1032(1747)
315 CHL00181 cbbX CbbX; Provisiona 96.3 0.022 4.8E-07 49.2 8.4 18 46-63 60-77 (287)
316 PRK14721 flhF flagellar biosyn 96.3 0.048 1E-06 49.5 10.6 130 45-208 191-322 (420)
317 PRK05896 DNA polymerase III su 96.3 0.014 3.1E-07 55.0 7.4 19 46-64 39-57 (605)
318 PRK14962 DNA polymerase III su 96.3 0.046 9.9E-07 50.7 10.6 17 47-63 38-54 (472)
319 PRK11823 DNA repair protein Ra 96.3 0.043 9.2E-07 50.7 10.4 52 45-106 80-131 (446)
320 PRK06090 DNA polymerase III su 96.3 0.029 6.3E-07 48.9 8.7 37 30-66 3-46 (319)
321 PRK12402 replication factor C 96.2 0.038 8.2E-07 49.3 9.6 39 156-195 124-162 (337)
322 PRK11331 5-methylcytosine-spec 96.2 0.029 6.4E-07 50.9 8.6 32 32-63 181-212 (459)
323 COG2804 PulE Type II secretory 96.2 0.01 2.2E-07 54.0 5.7 39 32-71 243-283 (500)
324 PHA00729 NTP-binding motif con 96.2 0.06 1.3E-06 44.2 9.6 17 47-63 19-35 (226)
325 PRK06871 DNA polymerase III su 96.2 0.041 8.8E-07 48.2 9.3 36 31-66 3-45 (325)
326 PRK05973 replicative DNA helic 96.2 0.017 3.7E-07 48.0 6.5 85 11-106 21-115 (237)
327 COG0593 DnaA ATPase involved i 96.2 0.066 1.4E-06 48.1 10.6 45 157-201 175-221 (408)
328 COG1223 Predicted ATPase (AAA+ 96.2 0.06 1.3E-06 44.6 9.4 64 158-221 211-286 (368)
329 PRK06731 flhF flagellar biosyn 96.2 0.14 3.1E-06 43.5 12.2 128 46-209 76-208 (270)
330 PF01695 IstB_IS21: IstB-like 96.1 0.0089 1.9E-07 47.6 4.6 44 43-96 45-88 (178)
331 PRK14969 DNA polymerase III su 96.1 0.044 9.4E-07 51.7 9.9 40 155-195 117-156 (527)
332 PRK08451 DNA polymerase III su 96.1 0.032 7E-07 52.2 8.8 40 155-195 115-154 (535)
333 KOG0298 DEAD box-containing he 96.1 0.0073 1.6E-07 60.2 4.7 97 252-353 1220-1317(1394)
334 PRK08699 DNA polymerase III su 96.1 0.086 1.9E-06 46.4 10.8 34 31-64 2-40 (325)
335 PRK14957 DNA polymerase III su 96.1 0.069 1.5E-06 50.3 10.6 39 156-195 118-156 (546)
336 PHA03372 DNA packaging termina 96.1 0.16 3.5E-06 47.6 12.6 130 46-198 203-337 (668)
337 PRK08939 primosomal protein Dn 96.1 0.057 1.2E-06 47.1 9.5 27 45-72 156-182 (306)
338 PRK12726 flagellar biosynthesi 96.0 0.048 1E-06 48.4 8.9 22 45-66 206-227 (407)
339 PRK07133 DNA polymerase III su 96.0 0.028 6.1E-07 54.3 8.0 18 47-64 42-59 (725)
340 PRK14955 DNA polymerase III su 96.0 0.093 2E-06 47.8 11.0 19 46-64 39-57 (397)
341 PRK10917 ATP-dependent DNA hel 96.0 0.047 1E-06 53.5 9.6 79 252-330 309-392 (681)
342 TIGR03881 KaiC_arch_4 KaiC dom 96.0 0.075 1.6E-06 44.4 9.7 53 44-106 19-71 (229)
343 PRK14954 DNA polymerase III su 96.0 0.037 8E-07 52.9 8.6 19 46-64 39-57 (620)
344 KOG2028 ATPase related to the 96.0 0.047 1E-06 47.4 8.3 17 46-62 163-179 (554)
345 COG2255 RuvB Holliday junction 96.0 0.022 4.8E-07 47.7 6.2 18 46-63 53-70 (332)
346 PRK14963 DNA polymerase III su 95.9 0.06 1.3E-06 50.4 9.7 17 47-63 38-54 (504)
347 TIGR00959 ffh signal recogniti 95.9 0.26 5.7E-06 45.0 13.5 21 47-67 101-121 (428)
348 PRK07993 DNA polymerase III su 95.9 0.045 9.8E-07 48.3 8.5 37 30-66 2-45 (334)
349 TIGR02760 TraI_TIGR conjugativ 95.9 0.043 9.4E-07 59.7 9.9 64 30-98 1019-1084(1960)
350 PRK14959 DNA polymerase III su 95.9 0.03 6.6E-07 53.1 7.7 19 46-64 39-57 (624)
351 PRK14948 DNA polymerase III su 95.9 0.1 2.2E-06 50.3 11.1 19 46-64 39-57 (620)
352 PF00265 TK: Thymidine kinase; 95.9 0.012 2.6E-07 46.5 4.2 36 48-92 4-39 (176)
353 PRK10867 signal recognition pa 95.8 0.31 6.8E-06 44.6 13.6 20 47-66 102-121 (433)
354 PRK00411 cdc6 cell division co 95.8 0.075 1.6E-06 48.6 9.9 17 46-62 56-72 (394)
355 COG0470 HolB ATPase involved i 95.8 0.058 1.3E-06 47.8 8.9 40 156-196 108-147 (325)
356 PHA00012 I assembly protein 95.8 0.19 4.2E-06 43.4 11.3 54 153-207 77-136 (361)
357 cd03115 SRP The signal recogni 95.8 0.38 8.2E-06 38.1 12.6 17 48-64 3-19 (173)
358 PRK13341 recombination factor 95.8 0.079 1.7E-06 51.8 10.1 18 46-63 53-70 (725)
359 PHA00350 putative assembly pro 95.8 0.12 2.7E-06 46.3 10.5 17 48-64 4-20 (399)
360 PRK09112 DNA polymerase III su 95.8 0.059 1.3E-06 48.0 8.5 43 155-198 139-181 (351)
361 PRK06067 flagellar accessory p 95.8 0.31 6.7E-06 40.9 12.5 53 44-106 24-76 (234)
362 KOG0732 AAA+-type ATPase conta 95.7 0.018 4E-07 57.1 5.6 54 8-62 262-316 (1080)
363 PF03237 Terminase_6: Terminas 95.7 0.15 3.3E-06 46.1 11.5 144 49-212 1-153 (384)
364 PRK13833 conjugal transfer pro 95.7 0.027 5.8E-07 49.2 6.1 62 24-94 124-186 (323)
365 PF05127 Helicase_RecD: Helica 95.7 0.0034 7.5E-08 49.3 0.5 122 49-199 1-124 (177)
366 TIGR02880 cbbX_cfxQ probable R 95.7 0.059 1.3E-06 46.6 8.0 18 46-63 59-76 (284)
367 cd01129 PulE-GspE PulE/GspE Th 95.7 0.033 7.2E-07 47.5 6.4 44 23-70 59-104 (264)
368 COG1200 RecG RecG-like helicas 95.7 0.083 1.8E-06 49.9 9.3 81 250-330 308-393 (677)
369 TIGR00643 recG ATP-dependent D 95.6 0.067 1.5E-06 52.0 9.0 80 252-331 283-367 (630)
370 PRK06995 flhF flagellar biosyn 95.6 0.049 1.1E-06 50.3 7.5 22 45-66 256-277 (484)
371 PF05707 Zot: Zonular occluden 95.6 0.036 7.9E-07 44.8 6.0 18 48-65 3-20 (193)
372 PRK06620 hypothetical protein; 95.6 0.042 9E-07 45.2 6.4 39 158-200 86-124 (214)
373 TIGR00064 ftsY signal recognit 95.5 0.38 8.3E-06 41.2 12.3 52 156-207 153-211 (272)
374 COG1474 CDC6 Cdc6-related prot 95.5 0.3 6.6E-06 43.7 12.1 26 46-72 43-68 (366)
375 COG1198 PriA Primosomal protei 95.5 0.11 2.4E-06 50.4 9.9 98 231-329 221-321 (730)
376 PRK13894 conjugal transfer ATP 95.5 0.05 1.1E-06 47.7 7.1 63 23-94 127-190 (319)
377 TIGR02785 addA_Gpos recombinat 95.5 0.04 8.8E-07 57.6 7.5 123 31-167 2-125 (1232)
378 PRK10436 hypothetical protein; 95.5 0.031 6.8E-07 51.5 6.0 44 23-70 197-242 (462)
379 PF06309 Torsin: Torsin; Inte 95.5 0.11 2.5E-06 38.1 7.7 58 48-106 56-113 (127)
380 TIGR00595 priA primosomal prot 95.5 0.13 2.9E-06 48.3 10.2 78 252-330 24-102 (505)
381 COG1132 MdlB ABC-type multidru 95.5 0.034 7.4E-07 53.4 6.5 39 155-194 481-519 (567)
382 PRK05580 primosome assembly pr 95.5 0.17 3.8E-06 49.5 11.3 78 252-330 189-267 (679)
383 TIGR02782 TrbB_P P-type conjug 95.4 0.071 1.5E-06 46.3 7.6 57 31-94 117-174 (299)
384 TIGR02639 ClpA ATP-dependent C 95.4 0.19 4E-06 49.9 11.4 18 45-62 203-220 (731)
385 TIGR00416 sms DNA repair prote 95.4 0.14 3.1E-06 47.3 10.0 52 45-106 94-145 (454)
386 PRK06647 DNA polymerase III su 95.4 0.077 1.7E-06 50.4 8.3 19 46-64 39-57 (563)
387 KOG0058 Peptide exporter, ABC 95.4 0.052 1.1E-06 51.6 6.9 42 155-197 620-661 (716)
388 PTZ00454 26S protease regulato 95.4 0.14 3.1E-06 46.4 9.6 18 45-62 179-196 (398)
389 TIGR02928 orc1/cdc6 family rep 95.3 0.13 2.9E-06 46.4 9.5 25 46-71 41-65 (365)
390 PRK14950 DNA polymerase III su 95.3 0.1 2.2E-06 50.2 9.1 18 47-64 40-57 (585)
391 PRK14953 DNA polymerase III su 95.3 0.13 2.8E-06 48.0 9.5 17 47-63 40-56 (486)
392 TIGR01243 CDC48 AAA family ATP 95.3 0.09 2E-06 52.2 9.0 18 45-62 487-504 (733)
393 PRK04841 transcriptional regul 95.3 0.19 4.1E-06 51.5 11.6 44 156-199 120-163 (903)
394 PRK03992 proteasome-activating 95.3 0.069 1.5E-06 48.5 7.5 18 45-62 165-182 (389)
395 PRK00440 rfc replication facto 95.3 0.31 6.6E-06 43.0 11.5 38 157-195 102-139 (319)
396 PRK06904 replicative DNA helic 95.3 0.27 5.7E-06 45.8 11.3 124 37-171 213-348 (472)
397 PRK00080 ruvB Holliday junctio 95.2 0.18 3.9E-06 44.8 9.8 18 46-63 52-69 (328)
398 PRK07399 DNA polymerase III su 95.2 0.26 5.7E-06 43.2 10.6 42 155-198 122-163 (314)
399 PRK14873 primosome assembly pr 95.2 0.19 4.2E-06 48.7 10.6 93 237-330 170-266 (665)
400 TIGR03600 phage_DnaB phage rep 95.2 0.15 3.2E-06 47.1 9.5 69 27-104 176-244 (421)
401 COG2874 FlaH Predicted ATPases 95.2 0.77 1.7E-05 37.1 11.9 133 45-203 28-172 (235)
402 PRK07940 DNA polymerase III su 95.2 0.3 6.5E-06 44.3 11.1 43 156-200 116-158 (394)
403 TIGR00635 ruvB Holliday juncti 95.2 0.16 3.5E-06 44.6 9.2 17 46-62 31-47 (305)
404 COG2909 MalT ATP-dependent tra 95.1 0.053 1.2E-06 52.4 6.3 43 157-199 129-171 (894)
405 PRK14971 DNA polymerase III su 95.1 0.14 3E-06 49.3 9.2 41 155-197 119-159 (614)
406 COG1618 Predicted nucleotide k 95.1 0.089 1.9E-06 40.2 6.2 25 47-72 7-31 (179)
407 TIGR02237 recomb_radB DNA repa 95.1 0.14 3.1E-06 42.0 8.2 39 44-91 11-49 (209)
408 PRK11034 clpA ATP-dependent Cl 95.0 0.14 3.1E-06 50.4 9.1 19 45-63 207-225 (758)
409 TIGR00678 holB DNA polymerase 95.0 0.2 4.3E-06 40.4 8.7 39 155-194 94-132 (188)
410 COG1197 Mfd Transcription-repa 95.0 0.13 2.8E-06 51.8 8.8 79 251-329 641-724 (1139)
411 TIGR03015 pepcterm_ATPase puta 95.0 0.71 1.5E-05 39.6 12.6 32 31-62 24-60 (269)
412 KOG0730 AAA+-type ATPase [Post 95.0 0.18 4E-06 47.4 9.1 138 8-201 431-581 (693)
413 PF01443 Viral_helicase1: Vira 94.9 0.017 3.7E-07 48.5 2.4 15 48-62 1-15 (234)
414 TIGR02533 type_II_gspE general 94.9 0.052 1.1E-06 50.6 5.6 43 23-69 221-265 (486)
415 COG4962 CpaF Flp pilus assembl 94.9 0.089 1.9E-06 45.6 6.4 58 27-94 154-212 (355)
416 PRK09376 rho transcription ter 94.9 0.13 2.8E-06 45.9 7.6 29 42-71 166-194 (416)
417 TIGR00665 DnaB replicative DNA 94.8 0.11 2.4E-06 48.1 7.7 61 37-106 187-247 (434)
418 KOG0744 AAA+-type ATPase [Post 94.8 0.29 6.4E-06 42.0 9.2 74 46-123 178-262 (423)
419 TIGR02868 CydC thiol reductant 94.8 0.054 1.2E-06 51.7 5.6 40 155-194 486-525 (529)
420 PRK06305 DNA polymerase III su 94.8 0.15 3.3E-06 47.1 8.3 18 46-63 40-57 (451)
421 TIGR02655 circ_KaiC circadian 94.8 0.3 6.4E-06 45.9 10.3 52 45-106 263-314 (484)
422 COG1110 Reverse gyrase [DNA re 94.8 0.12 2.5E-06 51.2 7.6 86 244-329 116-211 (1187)
423 TIGR00708 cobA cob(I)alamin ad 94.7 0.32 7E-06 38.2 8.7 52 156-207 96-149 (173)
424 COG1066 Sms Predicted ATP-depe 94.7 0.36 7.7E-06 43.0 9.8 88 45-172 93-183 (456)
425 PF06733 DEAD_2: DEAD_2; Inte 94.7 0.012 2.7E-07 46.7 0.9 44 128-171 115-159 (174)
426 cd00561 CobA_CobO_BtuR ATP:cor 94.7 0.51 1.1E-05 36.5 9.7 53 155-207 93-147 (159)
427 KOG0736 Peroxisome assembly fa 94.7 0.22 4.7E-06 47.9 8.9 48 156-203 763-824 (953)
428 TIGR00580 mfd transcription-re 94.6 0.19 4.1E-06 50.8 9.0 79 252-330 499-582 (926)
429 TIGR01241 FtsH_fam ATP-depende 94.6 0.16 3.6E-06 47.8 8.2 17 46-62 89-105 (495)
430 PF05729 NACHT: NACHT domain 94.6 0.45 9.7E-06 37.1 9.6 24 47-71 2-25 (166)
431 CHL00095 clpC Clp protease ATP 94.6 0.27 5.8E-06 49.5 10.0 19 45-63 200-218 (821)
432 PF14617 CMS1: U3-containing 9 94.6 0.16 3.5E-06 42.5 7.1 86 80-167 124-211 (252)
433 TIGR03345 VI_ClpV1 type VI sec 94.5 0.31 6.7E-06 49.0 10.2 28 35-62 192-225 (852)
434 cd01128 rho_factor Transcripti 94.5 0.11 2.4E-06 43.7 6.1 21 41-61 12-32 (249)
435 TIGR02538 type_IV_pilB type IV 94.5 0.081 1.8E-06 50.5 5.9 44 23-70 295-340 (564)
436 COG0552 FtsY Signal recognitio 94.5 0.96 2.1E-05 39.3 11.6 132 47-209 141-280 (340)
437 TIGR02397 dnaX_nterm DNA polym 94.5 0.28 6.1E-06 44.0 9.2 18 46-63 37-54 (355)
438 TIGR02525 plasmid_TraJ plasmid 94.5 0.11 2.4E-06 46.5 6.4 27 44-71 148-174 (372)
439 TIGR02688 conserved hypothetic 94.4 0.25 5.4E-06 44.5 8.4 25 40-64 204-228 (449)
440 COG2812 DnaX DNA polymerase II 94.4 0.066 1.4E-06 49.6 5.0 39 155-197 117-156 (515)
441 PRK05986 cob(I)alamin adenolsy 94.4 0.11 2.4E-06 41.4 5.6 52 155-207 113-167 (191)
442 PRK08760 replicative DNA helic 94.4 0.15 3.2E-06 47.6 7.3 116 42-170 226-352 (476)
443 PRK07004 replicative DNA helic 94.4 0.27 5.8E-06 45.7 8.9 122 37-170 205-337 (460)
444 KOG0737 AAA+-type ATPase [Post 94.4 0.48 1E-05 41.5 9.6 20 44-63 126-145 (386)
445 PRK08840 replicative DNA helic 94.4 0.5 1.1E-05 43.9 10.6 70 27-105 199-268 (464)
446 CHL00176 ftsH cell division pr 94.3 0.41 8.9E-06 46.3 10.3 17 46-62 217-233 (638)
447 PHA02535 P terminase ATPase su 94.3 0.52 1.1E-05 44.4 10.5 85 15-107 123-207 (581)
448 TIGR03345 VI_ClpV1 type VI sec 94.3 0.39 8.5E-06 48.3 10.4 17 47-63 598-614 (852)
449 TIGR01243 CDC48 AAA family ATP 94.3 0.4 8.6E-06 47.7 10.5 19 44-62 211-229 (733)
450 PRK08058 DNA polymerase III su 94.3 1 2.3E-05 39.9 12.1 41 155-196 108-148 (329)
451 KOG1132 Helicase of the DEAD s 94.3 1.1 2.4E-05 43.8 12.6 106 253-359 561-721 (945)
452 COG1219 ClpX ATP-dependent pro 94.2 0.038 8.2E-07 47.1 2.7 57 7-63 43-115 (408)
453 KOG0741 AAA+-type ATPase [Post 94.2 0.35 7.6E-06 44.5 8.7 37 47-94 540-576 (744)
454 COG1444 Predicted P-loop ATPas 94.2 0.81 1.8E-05 44.5 11.7 159 13-199 197-357 (758)
455 PRK14970 DNA polymerase III su 94.1 0.39 8.5E-06 43.4 9.4 18 46-63 40-57 (367)
456 PRK04328 hypothetical protein; 94.1 0.11 2.5E-06 43.9 5.6 53 44-106 22-74 (249)
457 KOG0733 Nuclear AAA ATPase (VC 94.0 0.19 4E-06 47.0 6.8 18 45-62 223-240 (802)
458 TIGR03878 thermo_KaiC_2 KaiC d 94.0 0.17 3.7E-06 43.1 6.4 39 44-91 35-73 (259)
459 KOG1807 Helicases [Replication 94.0 0.1 2.2E-06 49.8 5.2 74 28-104 376-449 (1025)
460 PRK10416 signal recognition pa 94.0 1.2 2.5E-05 39.3 11.5 53 156-208 195-254 (318)
461 KOG0734 AAA+-type ATPase conta 93.9 0.3 6.6E-06 44.9 7.9 46 155-200 394-449 (752)
462 COG0464 SpoVK ATPases of the A 93.9 0.37 8E-06 45.5 9.1 46 156-201 334-389 (494)
463 cd00984 DnaB_C DnaB helicase C 93.9 0.087 1.9E-06 44.4 4.5 43 42-92 10-52 (242)
464 PF12846 AAA_10: AAA-like doma 93.9 0.12 2.6E-06 45.1 5.5 41 45-94 1-41 (304)
465 TIGR03346 chaperone_ClpB ATP-d 93.8 0.65 1.4E-05 47.0 11.0 19 45-63 194-212 (852)
466 PRK13695 putative NTPase; Prov 93.8 0.98 2.1E-05 35.8 10.1 17 47-63 2-18 (174)
467 COG0542 clpA ATP-binding subun 93.8 0.85 1.8E-05 44.6 11.1 30 34-63 495-539 (786)
468 PRK06321 replicative DNA helic 93.8 0.42 9E-06 44.5 8.9 120 38-170 219-349 (472)
469 TIGR02524 dot_icm_DotB Dot/Icm 93.8 0.1 2.2E-06 46.6 4.8 26 44-70 133-158 (358)
470 PRK13851 type IV secretion sys 93.8 0.1 2.2E-06 46.2 4.7 43 42-94 159-201 (344)
471 TIGR02655 circ_KaiC circadian 93.7 0.13 2.9E-06 48.2 5.6 55 44-107 20-74 (484)
472 PRK10865 protein disaggregatio 93.7 0.73 1.6E-05 46.6 11.0 17 46-62 200-216 (857)
473 PRK15483 type III restriction- 93.7 0.12 2.7E-06 51.5 5.5 70 303-372 501-580 (986)
474 cd01130 VirB11-like_ATPase Typ 93.7 0.17 3.7E-06 40.7 5.6 31 31-61 10-41 (186)
475 KOG1513 Nuclear helicase MOP-3 93.6 0.098 2.1E-06 50.1 4.5 62 296-357 850-920 (1300)
476 PRK08006 replicative DNA helic 93.6 0.47 1E-05 44.2 8.8 60 37-105 216-275 (471)
477 PF03969 AFG1_ATPase: AFG1-lik 93.5 1.4 3.1E-05 39.5 11.5 17 45-61 62-78 (362)
478 TIGR03880 KaiC_arch_3 KaiC dom 93.5 0.21 4.6E-06 41.5 6.1 53 44-106 15-67 (224)
479 PRK13764 ATPase; Provisional 93.5 0.21 4.6E-06 47.5 6.5 27 44-71 256-282 (602)
480 PRK10689 transcription-repair 93.5 0.29 6.3E-06 50.7 7.9 79 252-330 648-731 (1147)
481 COG0210 UvrD Superfamily I DNA 93.4 0.22 4.7E-06 48.9 6.9 71 30-107 2-72 (655)
482 KOG0780 Signal recognition par 93.4 1.2 2.5E-05 39.5 10.2 131 47-208 103-235 (483)
483 cd01125 repA Hexameric Replica 93.3 0.97 2.1E-05 38.0 9.8 59 47-107 3-65 (239)
484 COG0467 RAD55 RecA-superfamily 93.3 0.22 4.7E-06 42.6 5.9 55 43-107 21-75 (260)
485 PRK05564 DNA polymerase III su 93.3 0.68 1.5E-05 40.8 9.1 40 155-195 91-130 (313)
486 CHL00206 ycf2 Ycf2; Provisiona 93.2 0.15 3.3E-06 54.2 5.4 46 156-201 1731-1783(2281)
487 PRK05748 replicative DNA helic 93.2 0.4 8.7E-06 44.6 7.9 58 37-103 195-252 (448)
488 PRK08506 replicative DNA helic 93.2 0.29 6.3E-06 45.7 6.9 57 39-105 186-242 (472)
489 PRK05636 replicative DNA helic 93.2 0.75 1.6E-05 43.3 9.6 115 43-170 263-388 (505)
490 TIGR00614 recQ_fam ATP-depende 93.1 3.4 7.3E-05 38.8 13.9 79 253-331 51-137 (470)
491 COG0541 Ffh Signal recognition 93.1 0.98 2.1E-05 40.7 9.5 132 48-209 103-235 (451)
492 TIGR00767 rho transcription te 93.0 0.27 5.8E-06 44.2 6.0 20 42-61 165-184 (415)
493 TIGR02640 gas_vesic_GvpN gas v 93.0 0.13 2.9E-06 43.9 4.1 27 37-63 13-39 (262)
494 PRK09087 hypothetical protein; 92.9 0.39 8.4E-06 40.0 6.7 38 159-198 89-126 (226)
495 PRK05800 cobU adenosylcobinami 92.8 0.64 1.4E-05 36.7 7.4 47 47-105 3-49 (170)
496 PRK13900 type IV secretion sys 92.8 0.13 2.8E-06 45.5 3.8 19 43-61 158-176 (332)
497 PF02572 CobA_CobO_BtuR: ATP:c 92.7 1.3 2.8E-05 34.8 8.9 52 155-206 94-147 (172)
498 TIGR00763 lon ATP-dependent pr 92.7 0.55 1.2E-05 47.0 8.5 18 45-62 347-364 (775)
499 PF00437 T2SE: Type II/IV secr 92.7 0.17 3.6E-06 43.5 4.4 43 43-94 125-167 (270)
500 cd01126 TraG_VirD4 The TraG/Tr 92.6 0.13 2.8E-06 46.7 3.8 49 47-106 1-49 (384)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-65 Score=419.62 Aligned_cols=378 Identities=67% Similarity=1.046 Sum_probs=364.2
Q ss_pred ccccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCC
Q 016375 2 AEEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVP 81 (390)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~ 81 (390)
++..+.++|.++++.+++.+.++..|+..|++.|+++++.++.|++++..+.||||||.+|++|++..+++.. .
T Consensus 55 ~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p------~ 128 (476)
T KOG0330|consen 55 QTDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP------K 128 (476)
T ss_pred hhhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC------C
Confidence 3456678999999999999999999999999999999999999999999999999999999999999999844 4
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEE
Q 016375 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (390)
Q Consensus 82 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~i 161 (390)
.+++||++|+++|+.|..+.++.++..++++++++.|+.+...+.....++++|+|+||+.|.+++.+.+.|.+..++++
T Consensus 129 ~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 129 LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred CceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred EEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcch
Q 016375 162 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD 241 (390)
Q Consensus 162 IiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (390)
|+|||+++.+.+|...+..++..+|..+|.+++|||++..+..+....+..|..+.....+...+.+.+.|..++...+.
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~ 288 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKD 288 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCC
Q 016375 242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321 (390)
Q Consensus 242 ~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~ 321 (390)
..+.+++.+..+..+||||+++..+..++-.|...|+.+..+||.|+...|...++.|++|.++||+||+..++|+|+|.
T Consensus 289 ~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~ 368 (476)
T KOG0330|consen 289 TYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPH 368 (476)
T ss_pred hhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeecccccc
Q 016375 322 VDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIEATR 385 (390)
Q Consensus 322 ~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (390)
+++||.||.|.+..+|+.|.||.+|.|..|.+|.+++.++.+.+..|+..+|+.....++++..
T Consensus 369 Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~ 432 (476)
T KOG0330|consen 369 VDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNE 432 (476)
T ss_pred ceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHH
Confidence 9999999999999999999999999999999999999999999999999999998877776643
No 2
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-58 Score=420.10 Aligned_cols=377 Identities=34% Similarity=0.500 Sum_probs=328.6
Q ss_pred ccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcC-CCCCCce
Q 016375 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQ-RTVPAFF 84 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (390)
+-.+|+++++++.+.+.|+.+||..|+|+|.++++.++.++++++.+|||+|||++|++|+++.+....... ....+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 346899999999999999999999999999999999999999999999999999999999999887643211 1124678
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEe
Q 016375 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (390)
Q Consensus 85 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiD 164 (390)
+||++|+++|+.|+.+.+..+....++.+..+.|+.............++|+|+||+.+.+.+.+. .+.+.+++++|+|
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-~~~l~~v~~lViD 164 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN-HINLGAIQVVVLD 164 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccccEEEEe
Confidence 999999999999999999999888889999999998877777777778999999999999988764 3678899999999
Q ss_pred hhhhhcccccHHHHHHHHHhCCC--CccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchh
Q 016375 165 EADRLLNDDFEKSLDEILNVIPR--MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242 (390)
Q Consensus 165 E~H~~~~~~~~~~~~~~~~~~~~--~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (390)
|+|++.+.++...+..++..++. ..+.+++|||++..........+..+..+...........+.+.+.......+..
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHH
Confidence 99999999999999999888875 3457899999999888888888888777665544443344444444445555666
Q ss_pred HHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC
Q 016375 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (390)
Q Consensus 243 ~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~ 322 (390)
.+..++......++||||+++..++.+++.|...+..+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++
T Consensus 245 ~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 245 LLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred HHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 67777777677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeecccc
Q 016375 323 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIEA 383 (390)
Q Consensus 323 ~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
++||+++.|.+...|.||+||+||.|++|.+++|+.+.+...+..+++.++..++..+++.
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 385 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYDS 385 (423)
T ss_pred CEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCCh
Confidence 9999999999999999999999999999999999999999999999999988876555443
No 3
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2e-58 Score=422.08 Aligned_cols=372 Identities=39% Similarity=0.600 Sum_probs=329.7
Q ss_pred CcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEE
Q 016375 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL 88 (390)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil 88 (390)
+|+++++++.+.+.|.++||..|+++|.++++.+++++++++.+|||+|||++|++|+++.+.............++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999988654322222234579999
Q ss_pred cCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhh
Q 016375 89 SPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR 168 (390)
Q Consensus 89 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~ 168 (390)
+|+++|+.|+.+.++.+....++.+..+.|+.....+...+...++|+|+||+.|...+.... +.++++++||+||+|+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~-~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA-VKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC-cccccceEEEeecHHH
Confidence 999999999999999998888899999999998887777777889999999999999877643 5688999999999999
Q ss_pred hcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHH
Q 016375 169 LLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 248 (390)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (390)
+.+..+...+..++..++...|.+++|||+++....+...++..+..+...........+.+.+.......+...+..++
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999988999999999999999999999999888888888888876665544444445556666666666666777777
Q ss_pred HhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEe
Q 016375 249 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY 328 (390)
Q Consensus 249 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~ 328 (390)
......++||||+++..++.+++.|...++.+..+|++++..+|..+++.|++|+++|||||+++++|+|+|++++||+|
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEe
Confidence 77677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeecc
Q 016375 329 DIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSI 381 (390)
Q Consensus 329 ~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
+.|.++.+|.||+||+||.|..|.+++++..++...+..+++.++..++...+
T Consensus 321 ~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~~~ 373 (456)
T PRK10590 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAI 373 (456)
T ss_pred CCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCccccc
Confidence 99999999999999999999999999999999999999999999887755443
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-59 Score=410.30 Aligned_cols=370 Identities=38% Similarity=0.591 Sum_probs=339.2
Q ss_pred CcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEE
Q 016375 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL 88 (390)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil 88 (390)
.|++++++++....|+..||..|+|.|.+.|+.++.|++++..+.||||||++|++|++..+...........++++|++
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999874333344568899999
Q ss_pred cCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhh
Q 016375 89 SPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR 168 (390)
Q Consensus 89 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~ 168 (390)
+||++|+.|+.+.+..++....++..++.|+.....+...+....+|+|+||+.+..++.... .+++++.++|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~-~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS-LNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC-ccccceeEEEeccHHh
Confidence 999999999999999999999999999999999999999999999999999999999999865 7899999999999999
Q ss_pred hcccccHHHHHHHHHhC-CCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCc--cccccccceeEEecCCCcchhHHH
Q 016375 169 LLNDDFEKSLDEILNVI-PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK--YSTVDTLKQQYRFVPAKYKDCYLV 245 (390)
Q Consensus 169 ~~~~~~~~~~~~~~~~~-~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 245 (390)
|.+.+|...+..++..+ +...|+++.|||++..+..+...++..+..+..... ......+.+....++...+...+.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 445589999999999999999999999988877754 355566777777788888888888
Q ss_pred HHHHhh---CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC
Q 016375 246 YILTEV---SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (390)
Q Consensus 246 ~~~~~~---~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~ 322 (390)
.++... .++|+||||++++.++++...++..++++..+||+.++.+|+.+++.|++|++.|||||+.+++|+|+|++
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 888766 47799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceee
Q 016375 323 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILF 379 (390)
Q Consensus 323 ~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
++||.||.|.++.+|++|+||.||.|++|.+++|+...+......+.+.++...+.+
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v 467 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTV 467 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999888887775544433
No 5
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.8e-57 Score=416.63 Aligned_cols=366 Identities=36% Similarity=0.540 Sum_probs=329.0
Q ss_pred CCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEE
Q 016375 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 87 (390)
.+|++++++..+.+.|+++||..|+|+|.++++.+.+++++++.+|||+|||.++++|++..+.... ...++||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~------~~~~~li 77 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR------FRVQALV 77 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc------CCceEEE
Confidence 5799999999999999999999999999999999999999999999999999999999998874321 3457999
Q ss_pred EcCCHHHHHHHHHHHHHhccCC-CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehh
Q 016375 88 LSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (390)
Q Consensus 88 l~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~ 166 (390)
++|+++|+.|+.++++.+.... ++.+..+.|+.+...+...+...++|+|+||+.+...+.+.. +.+.+++++|+||+
T Consensus 78 l~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~-~~l~~l~~lViDEa 156 (460)
T PRK11776 78 LCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT-LDLDALNTLVLDEA 156 (460)
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC-ccHHHCCEEEEECH
Confidence 9999999999999999876543 688889999998888777777889999999999999887743 66889999999999
Q ss_pred hhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHH
Q 016375 167 DRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246 (390)
Q Consensus 167 H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (390)
|++.+.+|...+..++..++...|++++|||+++....+...++..+..+...... ....+.+.+..++...+...+..
T Consensus 157 d~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ 235 (460)
T PRK11776 157 DRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQR 235 (460)
T ss_pred HHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999898888888777665443 23345666666777777778888
Q ss_pred HHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEE
Q 016375 247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI 326 (390)
Q Consensus 247 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi 326 (390)
++......++||||+++..++.+++.|.+.+..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 236 ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 236 LLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 88877888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeecc
Q 016375 327 NYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSI 381 (390)
Q Consensus 327 ~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
+++.|.++..|.||+||+||.|+.|.+++++.+.+...+..+++.++..+++.++
T Consensus 316 ~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l 370 (460)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPL 370 (460)
T ss_pred EecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecC
Confidence 9999999999999999999999999999999999999999999999887766544
No 6
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.8e-57 Score=422.46 Aligned_cols=375 Identities=37% Similarity=0.521 Sum_probs=328.4
Q ss_pred CCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhc-CCCCCCceEE
Q 016375 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAEN-QRTVPAFFAC 86 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~-~~~~~~~~~l 86 (390)
.+|+++++++.+.+.|+.+||..|+|+|.++++.+++++++++.+|||+|||++|++|+++.+...... .......++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 369999999999999999999999999999999999999999999999999999999999988653211 1111356899
Q ss_pred EEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehh
Q 016375 87 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (390)
Q Consensus 87 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~ 166 (390)
|++|+++|+.|+++.+..++...++.+..++|+.....+...+...++|+|+||+.|.+.+.+...+.+..+++|||||+
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 99999999999999999999888899999999998887777777789999999999999988765567888999999999
Q ss_pred hhhcccccHHHHHHHHHhCCC--CccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHH
Q 016375 167 DRLLNDDFEKSLDEILNVIPR--MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244 (390)
Q Consensus 167 H~~~~~~~~~~~~~~~~~~~~--~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (390)
|++.+..+...+..++..++. ..|++++|||++..+..+...++..+..+...........+.+.+.......+...+
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHH
Confidence 999998899899999988876 578999999999988888888887776555444433344455555555556666677
Q ss_pred HHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCE
Q 016375 245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM 324 (390)
Q Consensus 245 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~ 324 (390)
..++....+.++||||+++..++.+++.|.+.++.+..+|++++..+|..+++.|++|+.+|||+|+++++|+|+|++++
T Consensus 249 ~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~ 328 (572)
T PRK04537 249 LGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKY 328 (572)
T ss_pred HHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCE
Confidence 77777777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeeccc
Q 016375 325 VINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIE 382 (390)
Q Consensus 325 vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
||+|+.|.+...|+||+||+||.|++|.+++|+++.+...+..+++.++..++..++.
T Consensus 329 VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 386 (572)
T PRK04537 329 VYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVT 386 (572)
T ss_pred EEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccccC
Confidence 9999999999999999999999999999999999999999999999988776544433
No 7
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.4e-57 Score=420.39 Aligned_cols=375 Identities=37% Similarity=0.534 Sum_probs=325.0
Q ss_pred ccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCc
Q 016375 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 83 (390)
++++.+|+++++++.+.+.|+.+||..|+++|.++++.++.++++++.+|||||||++|++|++..+..... .....++
T Consensus 126 p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~gp 204 (545)
T PTZ00110 126 PKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGDGP 204 (545)
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCCCc
Confidence 466789999999999999999999999999999999999999999999999999999999999887764321 1123467
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEE
Q 016375 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (390)
Q Consensus 84 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIi 163 (390)
.+||++|+++|+.|+.+.++.++...++.+....|+.....+...+...++|+|+||+.|.+.+.+.. ..+.++++||+
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~-~~l~~v~~lVi 283 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV-TNLRRVTYLVL 283 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC-CChhhCcEEEe
Confidence 89999999999999999999998888889999999988877777777789999999999999887643 56888999999
Q ss_pred ehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcC-CCeEEecCCcc-ccccccceeEEecCCCcch
Q 016375 164 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLK-NPVKIEAASKY-STVDTLKQQYRFVPAKYKD 241 (390)
Q Consensus 164 DE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 241 (390)
||||++.+.+|...+..++..++...|++++|||++.....+...++. .+..+...... .....+.+.+..+....+.
T Consensus 284 DEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~ 363 (545)
T PTZ00110 284 DEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKR 363 (545)
T ss_pred ehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHH
Confidence 999999999999999999999998999999999999988888877765 35554443221 2233445555556666666
Q ss_pred hHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCC
Q 016375 242 CYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDI 319 (390)
Q Consensus 242 ~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~ 319 (390)
..+..++... .+.++||||++++.++.+++.|...++++..+|+++++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 364 ~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi 443 (545)
T PTZ00110 364 GKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDV 443 (545)
T ss_pred HHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCc
Confidence 6677777655 57799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeec
Q 016375 320 PSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFS 380 (390)
Q Consensus 320 ~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
|++++||+++.|.+...|.||+||+||.|++|.+++|+++.+...+..+.+.++...+.+|
T Consensus 444 ~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp 504 (545)
T PTZ00110 444 KDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVP 504 (545)
T ss_pred ccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999888888877765555444
No 8
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.8e-57 Score=420.67 Aligned_cols=369 Identities=40% Similarity=0.613 Sum_probs=330.6
Q ss_pred ccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceE
Q 016375 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (390)
...+|.++++++.+.+.|..+||.+|+|+|.++++.+.+++++++.+|||+|||.++++|+++.+.... .++++
T Consensus 4 ~~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~------~~~~~ 77 (629)
T PRK11634 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL------KAPQI 77 (629)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc------CCCeE
Confidence 355799999999999999999999999999999999999999999999999999999999988775421 45689
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCC-CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEe
Q 016375 86 CVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (390)
Q Consensus 86 lil~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiD 164 (390)
||++|+++|+.|+++.+..+.... ++.+..++|+.....+.......++|+|+||+.+.+++.+.. +.++++++||+|
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~-l~l~~l~~lVlD 156 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT-LDLSKLSGLVLD 156 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cchhhceEEEec
Confidence 999999999999999999886543 688888999988877777777789999999999999887743 678899999999
Q ss_pred hhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHH
Q 016375 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244 (390)
Q Consensus 165 E~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (390)
|+|++....+...+..++..++...|++++|||++.....+...++.++..+...........+.+.+..+....+...+
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L 236 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHH
Confidence 99999999999999999999999999999999999999988888888887776655554455556666666666777778
Q ss_pred HHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCE
Q 016375 245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM 324 (390)
Q Consensus 245 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~ 324 (390)
..++......++||||+++..++.+++.|...++.+..+|+++++.+|+.+++.|++|+.+|||||+++++|+|+|++++
T Consensus 237 ~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~ 316 (629)
T PRK11634 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISL 316 (629)
T ss_pred HHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCE
Confidence 88887777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeecc
Q 016375 325 VINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSI 381 (390)
Q Consensus 325 vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
||+++.|.++..|.|++||+||.|+.|.+++|+.+.+...+..+++.++..+++.++
T Consensus 317 VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~ 373 (629)
T PRK11634 317 VVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 373 (629)
T ss_pred EEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecC
Confidence 999999999999999999999999999999999999999999999999988876643
No 9
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.9e-56 Score=408.86 Aligned_cols=370 Identities=38% Similarity=0.590 Sum_probs=325.4
Q ss_pred CcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEE
Q 016375 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL 88 (390)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil 88 (390)
+|+++++++.+.+.|+.+||..|+++|.++++.+++++++++.+|||+|||+++++|++..+...... .....++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~lil 79 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRILIL 79 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999888653211 1235689999
Q ss_pred cCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhh
Q 016375 89 SPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR 168 (390)
Q Consensus 89 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~ 168 (390)
+|+++|+.|+.+.+..+....++.+..+.|+.........+..+++|+|+||+.|.+.+.... +.+.++++||+||+|+
T Consensus 80 ~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~-~~~~~v~~lViDEah~ 158 (434)
T PRK11192 80 TPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN-FDCRAVETLILDEADR 158 (434)
T ss_pred CCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC-cCcccCCEEEEECHHH
Confidence 999999999999999998888899999999998888877777889999999999999887644 6788999999999999
Q ss_pred hcccccHHHHHHHHHhCCCCccEEEEeecCch-hHHHHHHHhcCCCeEEecCCccccccccceeEEecCC-CcchhHHHH
Q 016375 169 LLNDDFEKSLDEILNVIPRMRQTYLFSATMTK-KVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLVY 246 (390)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 246 (390)
+.+..+...+..+....+...|++++|||+.. .+..+....+..+..+...........+.+.+..... ..+...+..
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 238 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCH 238 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHH
Confidence 99999999999999988888899999999975 4677777777788777666555555555555555543 344556666
Q ss_pred HHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEE
Q 016375 247 ILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI 326 (390)
Q Consensus 247 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi 326 (390)
++......++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||
T Consensus 239 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 239 LLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred HHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 66665778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeecc
Q 016375 327 NYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSI 381 (390)
Q Consensus 327 ~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
+++.|.+...|+||+||+||.|.+|.++++++..+...+..+++++..+++...+
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~~~~ 373 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKARVI 373 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999999888776654433
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.4e-56 Score=412.87 Aligned_cols=374 Identities=32% Similarity=0.511 Sum_probs=322.4
Q ss_pred ccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcC-CCCCC
Q 016375 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQ-RTVPA 82 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~-~~~~~ 82 (390)
+.++.+|+++++++.+.+.|+.+||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+....... ....+
T Consensus 117 p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~ 196 (518)
T PLN00206 117 PPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRN 196 (518)
T ss_pred CchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCC
Confidence 45788999999999999999999999999999999999999999999999999999999999998876532211 12256
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEE
Q 016375 83 FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (390)
Q Consensus 83 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iI 162 (390)
+++||++|+++|+.|+.+.++.+....++.+....|+............+++|+|+||+.|.+.+... ...++++++||
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lV 275 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH-DIELDNVSVLV 275 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccchheeEEE
Confidence 78999999999999999999999888888888888888777776666778999999999999988775 46788999999
Q ss_pred EehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchh
Q 016375 163 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242 (390)
Q Consensus 163 iDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (390)
+||+|++.+.+|...+..++..++ .+|++++|||+++.++.+...+...+..+...........+.+....+....+..
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~ 354 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQ 354 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHH
Confidence 999999999999999988888875 4689999999999999888888888877766554444444455555666666666
Q ss_pred HHHHHHHhhC--CCceEEEecchhHHHHHHHHHHh-cCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCC
Q 016375 243 YLVYILTEVS--ASSTMVFTRTCDATRLLALMLRN-LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDI 319 (390)
Q Consensus 243 ~~~~~~~~~~--~~~~lvf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~ 319 (390)
.+..++.... ..++||||+++..++.+++.|.. .+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+
T Consensus 355 ~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDi 434 (518)
T PLN00206 355 KLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDL 434 (518)
T ss_pred HHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCc
Confidence 6666666443 36899999999999999999975 58899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceee
Q 016375 320 PSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILF 379 (390)
Q Consensus 320 ~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
|++++||+++.|.+..+|+||+||+||.|..|.+++|+++.+...+..+.+.++.....+
T Consensus 435 p~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~v 494 (518)
T PLN00206 435 LRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAI 494 (518)
T ss_pred ccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999888888877776544433
No 11
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.5e-55 Score=403.56 Aligned_cols=370 Identities=35% Similarity=0.533 Sum_probs=322.3
Q ss_pred cCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCC-CCCCceE
Q 016375 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQR-TVPAFFA 85 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~-~~~~~~~ 85 (390)
...|..+++++.+.+.|+.+||..++++|.++++.+.+|+++++.+|||||||++|++|++..+.+...... .....++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 456888899999999999999999999999999999999999999999999999999999998876432111 1125689
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc-CCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEe
Q 016375 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (390)
Q Consensus 86 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiD 164 (390)
||++|+++|+.|+.+.++.+....++.+..+.|+.+.......+ ...++|+|+||++|.....++. ..++++++||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~-~~l~~l~~lViD 244 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE-VHLDMVEVMVLD 244 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC-cccccCceEEec
Confidence 99999999999999999999888888999999987766555444 3568999999999988776644 568899999999
Q ss_pred hhhhhcccccHHHHHHHHHhCCC--CccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchh
Q 016375 165 EADRLLNDDFEKSLDEILNVIPR--MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242 (390)
Q Consensus 165 E~H~~~~~~~~~~~~~~~~~~~~--~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (390)
|+|++....+...+..++..++. ..|++++|||.+.........+...+..+.............+.+.......+..
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~ 324 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYK 324 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHH
Confidence 99999998888888888888754 4689999999999888888888888777665554444444555566666666667
Q ss_pred HHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC
Q 016375 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (390)
Q Consensus 243 ~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~ 322 (390)
.+..++......++||||+++..++.+++.|...++.+..+||+++..+|.++++.|++|++++||+|+++++|+|+|++
T Consensus 325 ~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v 404 (475)
T PRK01297 325 LLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGI 404 (475)
T ss_pred HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCC
Confidence 77777777777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcce
Q 016375 323 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYI 377 (390)
Q Consensus 323 ~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 377 (390)
++||+++.|.+..+|+||+||+||.|++|.+++|+.+++...+..+++.++..++
T Consensus 405 ~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 405 SHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred CEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999999999999998874
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-55 Score=402.93 Aligned_cols=364 Identities=44% Similarity=0.689 Sum_probs=335.7
Q ss_pred CCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCce-EE
Q 016375 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF-AC 86 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~-~l 86 (390)
..|.++++++++.+.++.+||..|+|.|..+++.++.+++++..++||+|||.+|++|+++.+.... . .... +|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--~---~~~~~aL 103 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--E---RKYVSAL 103 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--c---cCCCceE
Confidence 5799999999999999999999999999999999999999999999999999999999999976431 1 1111 99
Q ss_pred EEcCCHHHHHHHHHHHHHhccCC-CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEeh
Q 016375 87 VLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (390)
Q Consensus 87 il~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE 165 (390)
|++||++|+.|+++.+..++... ++.+..+.|+.+...+...+...++|+|+||+.+++++.+. .+++..+.++|+||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDE 182 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDE 182 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEecc
Confidence 99999999999999999999887 79999999999988888877778999999999999999987 58899999999999
Q ss_pred hhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccc--cccccceeEEecCCCc-chh
Q 016375 166 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS--TVDTLKQQYRFVPAKY-KDC 242 (390)
Q Consensus 166 ~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~ 242 (390)
|++|.+.+|.+.+..+...++...|++++|||++..+..+.+.++.+|..+....... ....+.+.+..+.... +..
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~ 262 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE 262 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999998777774444 6778888888888766 888
Q ss_pred HHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC
Q 016375 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (390)
Q Consensus 243 ~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~ 322 (390)
.+..++......++||||+++..++.++..|...|+.+..+||++++.+|.+.++.|++|+.+|||||+.+++|+|+|++
T Consensus 263 ~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 263 LLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDV 342 (513)
T ss_pred HHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccc
Confidence 88999988888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCcchhhhccccccCCCCcceEEEEeccc-cHHHHHHHHHHhCCcce
Q 016375 323 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY-ELEWYLQIEKLIGMLYI 377 (390)
Q Consensus 323 ~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~ 377 (390)
++||.||.|.++..|.+|+||.||.|.+|.+++|+.+. +...+..+++.++...+
T Consensus 343 ~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 343 SHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred ceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999976 89999999998876643
No 13
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7.7e-55 Score=395.88 Aligned_cols=370 Identities=32% Similarity=0.525 Sum_probs=319.0
Q ss_pred cCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEE
Q 016375 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (390)
+.+|+++++++.+.+.+..+||..|+|+|.++++.+.+++++++.+|||+|||++++++++..+... ..+.++|
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~------~~~~~~l 100 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD------LNACQAL 100 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC------CCCceEE
Confidence 5788999999999999999999999999999999999999999999999999999999988766321 1466799
Q ss_pred EEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehh
Q 016375 87 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (390)
Q Consensus 87 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~ 166 (390)
|++|+++|+.|+.+.+..++...+..+....|+.............++|+|+||+.+.+.+.+.. ..++++++||+||+
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~i~lvViDEa 179 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH-LRVDDLKLFILDEA 179 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC-cccccccEEEEecH
Confidence 99999999999999999988777788888888887766666666778999999999998887643 56889999999999
Q ss_pred hhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCC-CcchhHHH
Q 016375 167 DRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLV 245 (390)
Q Consensus 167 H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 245 (390)
|++....+...+..++..++...|++++|||+++........+...+..+...............+..... ..+...+.
T Consensus 180 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 180 DEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHH
Confidence 99998888888888888898889999999999998888777777777665544433333344444443332 23444555
Q ss_pred HHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEE
Q 016375 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV 325 (390)
Q Consensus 246 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~v 325 (390)
.++......+++|||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++|
T Consensus 260 ~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~V 339 (401)
T PTZ00424 260 DLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLV 339 (401)
T ss_pred HHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEE
Confidence 56666667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeecccc
Q 016375 326 INYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIEA 383 (390)
Q Consensus 326 i~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
|+++.|.+...|.||+||+||.|++|.|+.++.+.+.+.+..+++.++..++..+.+.
T Consensus 340 I~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~ 397 (401)
T PTZ00424 340 INYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEV 397 (401)
T ss_pred EEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcch
Confidence 9999999999999999999999999999999999999999999999998887766543
No 14
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-55 Score=356.68 Aligned_cols=374 Identities=49% Similarity=0.741 Sum_probs=342.7
Q ss_pred ccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCc
Q 016375 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 83 (390)
....++|+.+++++=+.+.|+.+|+..++|.|..+++.|++|++++-+|.||||||.++.+|+++.+-++. .+-
T Consensus 3 ~~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP------~gi 76 (442)
T KOG0340|consen 3 RKTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP------YGI 76 (442)
T ss_pred ccccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC------Ccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999887654 788
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCC---CccCCCccE
Q 016375 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTK---GFSLGTLKY 160 (390)
Q Consensus 84 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~---~~~~~~~~~ 160 (390)
.+||++||++|+.|..+.|..++...++++.++.|+.+...+...+.+.++++|+||+.+..++.+.. .+.++++.+
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkf 156 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKF 156 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceee
Confidence 99999999999999999999999999999999999999999999999999999999999999988763 234788999
Q ss_pred EEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCC--CeEEecCCccccccccceeEEecCCC
Q 016375 161 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN--PVKIEAASKYSTVDTLKQQYRFVPAK 238 (390)
Q Consensus 161 iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (390)
+|+|||+++.+..|.+.+..+...+|..+|.+++|||....+......-... ...+......+....+.+.+..++..
T Consensus 157 lVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~ 236 (442)
T KOG0340|consen 157 LVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSID 236 (442)
T ss_pred EEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchh
Confidence 9999999999999999999999999999999999999999887766544443 34444445566777888899999999
Q ss_pred cchhHHHHHHHhhC---CCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCC
Q 016375 239 YKDCYLVYILTEVS---ASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 315 (390)
Q Consensus 239 ~~~~~~~~~~~~~~---~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~ 315 (390)
.+...+..+++... ++.++||++...+++.++..|+...+.+..+|+.|++.+|...+.+|+++..+|||||+.+++
T Consensus 237 vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsR 316 (442)
T KOG0340|consen 237 VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASR 316 (442)
T ss_pred hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhc
Confidence 99999988887654 577999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeecccc
Q 016375 316 GLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIEA 383 (390)
Q Consensus 316 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
|+|+|.++.|+.++.|.+|.+|+.|.||..|.|..|.++.++.+++++.+..+++..|+...+.+...
T Consensus 317 GLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~ 384 (442)
T KOG0340|consen 317 GLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQ 384 (442)
T ss_pred CCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999887776443
No 15
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-54 Score=344.16 Aligned_cols=371 Identities=33% Similarity=0.552 Sum_probs=341.9
Q ss_pred cccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCce
Q 016375 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (390)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (390)
..+.+|++.++++++.+.+.+.||+.|+..|+.+++++.+|++++..+..|+|||.++.+.++..+.-.. ..-+
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~------r~tQ 97 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV------RETQ 97 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc------ceee
Confidence 3478899999999999999999999999999999999999999999999999999887766665543221 3456
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEe
Q 016375 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (390)
Q Consensus 85 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiD 164 (390)
+|+++|+++|+.|..+.+..++...++.+....|+.+..+.......+.+++.+||+.+++.+.+.. +..+.+.++|+|
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~-L~tr~vkmlVLD 176 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS-LRTRAVKMLVLD 176 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc-ccccceeEEEec
Confidence 9999999999999999999999999999999999999888777777889999999999999988754 667889999999
Q ss_pred hhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCc-chhH
Q 016375 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY-KDCY 243 (390)
Q Consensus 165 E~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 243 (390)
|++.+++.+|...+..++..+|+..|++++|||++..+.++.+.++.+|..+-..........+.+.+..+..+. +.+.
T Consensus 177 EaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdt 256 (400)
T KOG0328|consen 177 EADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDT 256 (400)
T ss_pred cHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhH
Confidence 999999999999999999999999999999999999999999999999999888877777777888887766544 8888
Q ss_pred HHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCC
Q 016375 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD 323 (390)
Q Consensus 244 ~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~ 323 (390)
+..+.....-..++|||++++.+..+.+.+.+.+..+...||+|+.++|+.+++.|++|+.+||++|+.-.+|+|+|.++
T Consensus 257 LcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVs 336 (400)
T KOG0328|consen 257 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVS 336 (400)
T ss_pred HHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeE
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeeccc
Q 016375 324 MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIE 382 (390)
Q Consensus 324 ~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
.||.||.|-+...|++|+||.||.|.+|.++-|+.+.+...+..++++|+..+.+.|.+
T Consensus 337 lviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 337 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred EEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 99999999999999999999999999999999999999999999999999999888764
No 16
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6.5e-54 Score=367.09 Aligned_cols=369 Identities=36% Similarity=0.613 Sum_probs=342.5
Q ss_pred ccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhc---CCCC
Q 016375 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAEN---QRTV 80 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~---~~~~ 80 (390)
+.++.+|+..+++.++++.++..|+..|+|.|+.+++..++.+++|..+.||||||.++++|++.++-+.... ....
T Consensus 241 pnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~ 320 (673)
T KOG0333|consen 241 PNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNI 320 (673)
T ss_pred CccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcc
Confidence 5678999999999999999999999999999999999999999999999999999999999999999876522 2345
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccE
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 160 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~ 160 (390)
.++.++++.|+++|++|..++-.+++..++.++..+.|+....++...+...|+|+|+||+.|...+.+.. +-+++..+
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~-lvl~qcty 399 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRY-LVLNQCTY 399 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHH-HHhccCce
Confidence 78999999999999999999999999999999999999999999988888999999999999999988754 56889999
Q ss_pred EEEehhhhhcccccHHHHHHHHHhCCCC-------------------------ccEEEEeecCchhHHHHHHHhcCCCeE
Q 016375 161 LVLDEADRLLNDDFEKSLDEILNVIPRM-------------------------RQTYLFSATMTKKVKKLQRACLKNPVK 215 (390)
Q Consensus 161 iIiDE~H~~~~~~~~~~~~~~~~~~~~~-------------------------~~~i~~saT~~~~~~~~~~~~~~~~~~ 215 (390)
+|+||+++|.+.+|...+..++..+|.. .|.+++|||+++.++.+++.++..|..
T Consensus 400 vvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~ 479 (673)
T KOG0333|consen 400 VVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVV 479 (673)
T ss_pred EeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeE
Confidence 9999999999999999999998877542 479999999999999999999999999
Q ss_pred EecCCccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHH
Q 016375 216 IEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 295 (390)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 295 (390)
+.........+.+.+....++...+...+..++......++|||+|.++.++.+++.|.+.|+.+..+||+.++++|+.+
T Consensus 480 vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~a 559 (673)
T KOG0333|consen 480 VTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENA 559 (673)
T ss_pred EEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHH
Confidence 98888888888899999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhC
Q 016375 296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIG 373 (390)
Q Consensus 296 ~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~ 373 (390)
++.|++|..+|||||+++++|+|+|++++||.|+.+++..+|.+|+||.||.|+.|.+++|+++.+-+.+..+.+.+.
T Consensus 560 L~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 560 LADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred HHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999776666665553
No 17
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.3e-53 Score=363.10 Aligned_cols=369 Identities=39% Similarity=0.602 Sum_probs=333.9
Q ss_pred CCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEE
Q 016375 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 87 (390)
..|+..++|+.+.+.++.+||..+++.|...++.++.+++++..|-||+|||+++++|+++.+....-... ++-.++|
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r--~~~~vlI 159 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR--NGTGVLI 159 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC--CCeeEEE
Confidence 45678889999999999999999999999999999999999999999999999999999999988664443 6667999
Q ss_pred EcCCHHHHHHHHHHHHHhccCC-CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehh
Q 016375 88 LSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (390)
Q Consensus 88 l~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~ 166 (390)
+|||++|+.|.+.+++++.... .+.+....|+.+.....+.+...++|+|+||+.|.+++.+...+...+..++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999987766 788999999999998888888899999999999999999988888888899999999
Q ss_pred hhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCC-CeEEecCCc--cccccccceeEEecCCCcchhH
Q 016375 167 DRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-PVKIEAASK--YSTVDTLKQQYRFVPAKYKDCY 243 (390)
Q Consensus 167 H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 243 (390)
+++++.+|.+.+..+...++..+|..++|||.++.++.+....+.. +..+..... ......+.+.+...+.......
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~l 319 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSL 319 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHH
Confidence 9999999999999999999999999999999999999988877765 555555443 3445667777777888777777
Q ss_pred HHHHHHhhCC-CceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC
Q 016375 244 LVYILTEVSA-SSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (390)
Q Consensus 244 ~~~~~~~~~~-~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~ 322 (390)
+..++++... .++||||+++......++.|+...+++..+||+.++..|..+...|.+.+.-||+||+...+|+|+|++
T Consensus 320 l~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 320 LYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 8888887765 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeecc
Q 016375 323 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSI 381 (390)
Q Consensus 323 ~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
+.||.+++|.++.+|++|+||.+|.|+.|..+.++.+.+..++..++ +.++++.++
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~ 455 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEF 455 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCC
Confidence 99999999999999999999999999999999999999999999998 334444443
No 18
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-54 Score=368.87 Aligned_cols=375 Identities=37% Similarity=0.570 Sum_probs=339.1
Q ss_pred ccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceE
Q 016375 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (390)
.++.|.++|+|....+.|+..+|..+++.|++.++..++|++++-.+-||||||++++.|+++.+.+.. +....|.=+
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k--Ws~~DGlGa 144 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK--WSPTDGLGA 144 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC--CCCCCCcee
Confidence 466899999999999999999999999999999999999999999999999999999999999998753 333456669
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEeh
Q 016375 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (390)
Q Consensus 86 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE 165 (390)
|||+||++|+.|..+.+.+.+...++....+.|+.+........ .+.+|+||||+.|+.++.....+..+++-++|+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 99999999999999999999999999999999999866655544 35899999999999999999989999999999999
Q ss_pred hhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCC--ccccccccceeEEecCCCcchhH
Q 016375 166 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS--KYSTVDTLKQQYRFVPAKYKDCY 243 (390)
Q Consensus 166 ~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 243 (390)
|+++++.+|...+..+.+.+|..+|.+++|||....+.++++..+.+|..+.... ..+.+..+.+.|..++...+...
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~ 303 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDM 303 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHH
Confidence 9999999999999999999999999999999999999999999998887766553 34667788999999999999999
Q ss_pred HHHHHHhhCCCceEEEecchhHHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCC
Q 016375 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321 (390)
Q Consensus 244 ~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~ 321 (390)
+-.++..+...+.|||..+++++..+++.+... |++...+||.+++..|.++...|......||+||+.+++|+|+|.
T Consensus 304 L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpa 383 (758)
T KOG0343|consen 304 LWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPA 383 (758)
T ss_pred HHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcc
Confidence 999999999999999999999999999999875 778899999999999999999999999899999999999999999
Q ss_pred CCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeecccc
Q 016375 322 VDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIEA 383 (390)
Q Consensus 322 ~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
++.||.+|+|.++..|++|+||..|.+..|.+++++.+.+.+.+-..-+.-+.+.+.+.++.
T Consensus 384 VdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~I~i~~i~i~~ 445 (758)
T KOG0343|consen 384 VDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKKIPIKEIKIDP 445 (758)
T ss_pred cceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcCCCHHhhccCH
Confidence 99999999999999999999999999999999999999996555443333345665555443
No 19
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-53 Score=363.31 Aligned_cols=361 Identities=43% Similarity=0.678 Sum_probs=335.4
Q ss_pred CCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEE
Q 016375 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 87 (390)
.+|.++.||..+.+.+..+||..|+|.|...++-.+-|++++-+|.||||||-+|.+|++++++..+.. ...-+|||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRVLV 257 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRVLV 257 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc---CcceeEEE
Confidence 478899999999999999999999999999999999999999999999999999999999999875433 35668999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhh
Q 016375 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (390)
Q Consensus 88 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H 167 (390)
++||++|+.|.+...+++..-.++.+++..|+.+...+...+...+||+|+||+.|.+++.+...|+++++.++|+|||+
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 99999999999999998888788999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecC---CCcchhHH
Q 016375 168 RLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP---AKYKDCYL 244 (390)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 244 (390)
+|+..+|.+.+.++...+++.+|.+++|||++..++.+...-++.|+.+...+.......+.+.+.-+. ...+...+
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l 417 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAML 417 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHH
Confidence 999999999999999999999999999999999999999999999999988887766666666554433 34556677
Q ss_pred HHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCE
Q 016375 245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM 324 (390)
Q Consensus 245 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~ 324 (390)
..++...-...++||+.++..|..+.-.|--.|+.+.-+||.+++.+|.+.++.|++++++|||||+.+++|+|++++.+
T Consensus 418 ~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~t 497 (691)
T KOG0338|consen 418 ASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQT 497 (691)
T ss_pred HHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeE
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHH
Q 016375 325 VINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKL 371 (390)
Q Consensus 325 vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~ 371 (390)
||.|..|.+...|++|+||..|.|..|..|+|+.+.+...++.+-+-
T Consensus 498 VINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 498 VINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred EEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999988665
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-52 Score=352.94 Aligned_cols=373 Identities=38% Similarity=0.567 Sum_probs=324.9
Q ss_pred CCcccCC--CCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceE
Q 016375 8 KTFKELG--LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (390)
Q Consensus 8 ~~~~~~~--~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (390)
..|++++ |+..+...+..+||...+|.|..+++.++.++++++.++||||||+++++|+++.+.+.....++. ..-+
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-~vga 82 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-QVGA 82 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc-ceeE
Confidence 4577775 569999999999999999999999999999999999999999999999999999997654433222 2368
Q ss_pred EEEcCCHHHHHHHHHHHHHhccC-CCceEEEEecCCchHHHHHhcC-CCCCEEEeCCchhHHHhhcC-CCccCCCccEEE
Q 016375 86 CVLSPTRELAIQISEQFEALGSG-ISLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNT-KGFSLGTLKYLV 162 (390)
Q Consensus 86 lil~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~t~~~l~~~~~~~-~~~~~~~~~~iI 162 (390)
|||+||++|+.|..+-+..+... .++.+..+.|+....+....+. ++++|+|+||+.|.+.+.+. ..++++.+.++|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 99999999999999998887665 6788999999987776655554 46889999999999999873 335677999999
Q ss_pred EehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccc--cccccceeEEecCCCcc
Q 016375 163 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS--TVDTLKQQYRFVPAKYK 240 (390)
Q Consensus 163 iDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 240 (390)
+|||+++.+.+|...+..++..+|+.++.=++|||....++.+.+..+.++..+....+.. .+..+...|..++...+
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999999999999999999999999999999999999999999999999999887777664 55567778888999999
Q ss_pred hhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCC
Q 016375 241 DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLD 318 (390)
Q Consensus 241 ~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d 318 (390)
...+..++......++|||.+++..++++...+... ..++..+||.+.+..|...++.|.+....+|++|+.+.+|+|
T Consensus 243 ~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 243 LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 999999999999999999999999999999999876 457899999999999999999999977789999999999999
Q ss_pred CCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeecc
Q 016375 319 IPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSI 381 (390)
Q Consensus 319 ~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
+|+++.||++|+|.++..|.+|.||.+|.|..|.+++|+.+.+.+..+-++-.-....+...+
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~ 385 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDT 385 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcc
Confidence 999999999999999999999999999999999999999996655544333322234444433
No 21
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-53 Score=343.45 Aligned_cols=365 Identities=33% Similarity=0.578 Sum_probs=342.7
Q ss_pred CCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEE
Q 016375 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 87 (390)
..|+++.|..++...+...||+.|+|.|.+.++..+.|++++..+..|+|||-++++|+++.+.... ..-+++|
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~------~~IQ~~i 158 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK------NVIQAII 158 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc------cceeEEE
Confidence 4577888888888888999999999999999999999999999999999999999999999875432 4456899
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhh
Q 016375 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (390)
Q Consensus 88 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H 167 (390)
++|+++|+.|..+..++++...++.+.+.+|+++.........+..+++|+||+.+++..... ..++++..++|+|||+
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg-Va~ls~c~~lV~DEAD 237 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG-VADLSDCVILVMDEAD 237 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc-cccchhceEEEechhh
Confidence 999999999999999999999999999999999988887778888999999999999988764 3678999999999999
Q ss_pred hhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHH
Q 016375 168 RLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247 (390)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (390)
.+.+..|...+..++..+|+.+|+++.|||.+-.+..+...++..|+.++...+. ....+.+.|.++.+..+..-+..+
T Consensus 238 KlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL-tl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 238 KLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL-TLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred hhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhh-hhcchhhheeeechhhhhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999988765 445678899999999999999999
Q ss_pred HHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEE
Q 016375 248 LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN 327 (390)
Q Consensus 248 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~ 327 (390)
+...+-...+|||+|...++.++..+.+.|+.+..+|+.|.+++|..+...|++|.|+.||||+.+.+|+|++.+.+||.
T Consensus 317 fskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN 396 (459)
T KOG0326|consen 317 FSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN 396 (459)
T ss_pred HHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeec
Q 016375 328 YDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFS 380 (390)
Q Consensus 328 ~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
||.|.++..|+.|+||.||.|.-|.++.+++-++...+..+++.+|.+++.+|
T Consensus 397 FDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip 449 (459)
T KOG0326|consen 397 FDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIP 449 (459)
T ss_pred cCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCC
Confidence 99999999999999999999999999999999999999999999999998887
No 22
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-50 Score=349.81 Aligned_cols=369 Identities=37% Similarity=0.527 Sum_probs=333.3
Q ss_pred ccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCC--C--C
Q 016375 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRT--V--P 81 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~--~--~ 81 (390)
.+.+|.+-.+.+.+..+++..|+..++|+|+.+++.+..|++.+.+|+||+|||.++++|++..+.+....... . .
T Consensus 72 ~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~ 151 (482)
T KOG0335|consen 72 HIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGV 151 (482)
T ss_pred CcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCC
Confidence 35567777788888999999999999999999999999999999999999999999999999999876543221 1 3
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEE
Q 016375 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (390)
Q Consensus 82 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~i 161 (390)
.+.++|++||++|+.|.+++.+++.....+......|+.+...+.......|+|+|+||+.|.+.+.+.+ +.++++.++
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~-i~l~~~k~~ 230 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK-ISLDNCKFL 230 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce-eehhhCcEE
Confidence 5789999999999999999999999889999999999988888888888999999999999999998865 789999999
Q ss_pred EEehhhhhcc-cccHHHHHHHHHhCCC----CccEEEEeecCchhHHHHHHHhcCC-CeEEecCCccccccccceeEEec
Q 016375 162 VLDEADRLLN-DDFEKSLDEILNVIPR----MRQTYLFSATMTKKVKKLQRACLKN-PVKIEAASKYSTVDTLKQQYRFV 235 (390)
Q Consensus 162 IiDE~H~~~~-~~~~~~~~~~~~~~~~----~~~~i~~saT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 235 (390)
|+|||++|.+ ..|...+..+...... ..|.+++|||.+..+..+...++.+ +..+..........++.+...++
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V 310 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFV 310 (482)
T ss_pred EecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeee
Confidence 9999999999 8999999999887754 5799999999999999888877776 77777777777888899999999
Q ss_pred CCCcchhHHHHHHHhhC----CC-----ceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccE
Q 016375 236 PAKYKDCYLVYILTEVS----AS-----STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306 (390)
Q Consensus 236 ~~~~~~~~~~~~~~~~~----~~-----~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 306 (390)
....+...+..++.... .. +++|||.+++.+..+...|...+.++..+|+..++.+|++.++.|++|.+.+
T Consensus 311 ~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pv 390 (482)
T KOG0335|consen 311 NEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPV 390 (482)
T ss_pred cchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcce
Confidence 99999999999887543 33 7999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCc
Q 016375 307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGML 375 (390)
Q Consensus 307 lv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 375 (390)
+|||.++.+|+|+|++++||.||.|.+..+|+.|+||.||.|+.|.++.|++..+....+.+.+.+.-.
T Consensus 391 lVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea 459 (482)
T KOG0335|consen 391 LVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEA 459 (482)
T ss_pred EEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988888888777766433
No 23
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-50 Score=335.06 Aligned_cols=366 Identities=36% Similarity=0.526 Sum_probs=318.8
Q ss_pred cCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEE
Q 016375 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (390)
-++|+.++|++++.+.+...|+..|+-.|..+++.+++|++++..|.||||||.+|++|+++.++..........+..++
T Consensus 18 ~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred hccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 47999999999999999999999999999999999999999999999999999999999999999876655555788999
Q ss_pred EEcCCHHHHHHHHHHHHHhccCC--CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEe
Q 016375 87 VLSPTRELAIQISEQFEALGSGI--SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (390)
Q Consensus 87 il~P~~~l~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiD 164 (390)
|++||++|+.|.+..+.++.... .+++..+.++.+.......+.+.++|+|+||..+..++.......+..++++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 99999999999998887754322 3455555544444444466778899999999999999988765678889999999
Q ss_pred hhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCcc-ccccccceeEEecCCCcchhH
Q 016375 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY-STVDTLKQQYRFVPAKYKDCY 243 (390)
Q Consensus 165 E~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 243 (390)
||+.+...+|.+.+..+...+|+..|.++||||...++..+.+.++.+|..+...... ...+.+.+....+....+...
T Consensus 178 EADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfll 257 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLL 257 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHH
Confidence 9999999999999999999999999999999999999999999999999988766544 445566777777776666666
Q ss_pred HHHHHHh-hCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-----------
Q 016375 244 LVYILTE-VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD----------- 311 (390)
Q Consensus 244 ~~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~----------- 311 (390)
+..+++- .-.++.|||+|+.+.+..+.-.|...|++.++++|.++...|-.+++.|+.|-++++|||+
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 6555553 3578999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------------------CCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHH
Q 016375 312 ------------------------VASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQ 367 (390)
Q Consensus 312 ------------------------~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~ 367 (390)
-.++|+|+.++.+|+.||.|.++..|+.|+||.+|.+++|.+++|+.+.+......
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 24579999999999999999999999999999999999999999999988875555
Q ss_pred HHHHh
Q 016375 368 IEKLI 372 (390)
Q Consensus 368 ~~~~~ 372 (390)
++..+
T Consensus 418 le~~~ 422 (569)
T KOG0346|consen 418 LESIL 422 (569)
T ss_pred HHHHH
Confidence 55444
No 24
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.3e-48 Score=372.05 Aligned_cols=353 Identities=21% Similarity=0.239 Sum_probs=273.7
Q ss_pred CCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 15 ~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
+++++.+.|+.+|+..|+++|.++++.+.+|+++++.+|||||||++|++|+++.+.+. ++.++||++|+++|
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-------~~~~aL~l~PtraL 93 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-------PRATALYLAPTKAL 93 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-------CCcEEEEEcChHHH
Confidence 78999999999999999999999999999999999999999999999999999988652 45689999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhc-CCC--ccCCCccEEEEehhhhhcc
Q 016375 95 AIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTN-TKG--FSLGTLKYLVLDEADRLLN 171 (390)
Q Consensus 95 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~-~~~--~~~~~~~~iIiDE~H~~~~ 171 (390)
+.|+.+.++.++ ..++.+..+.|+.....+ .....+++|+|+||+.+...+.. ... ..++++++||+||+|.+..
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r-~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPTEER-RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCHHHH-HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 446788888888875544 34455689999999998753332 110 1267899999999998765
Q ss_pred cccHHHHHHHH-------HhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCC-------
Q 016375 172 DDFEKSLDEIL-------NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA------- 237 (390)
Q Consensus 172 ~~~~~~~~~~~-------~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 237 (390)
.|+..+..++ ...+..+|++++|||.++..+ ....+++.+.......... . .........+.
T Consensus 172 -~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~~~~~~-~-~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVTEDGSP-R-GARTVALWEPPLTELTGE 247 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEECCCCCC-c-CceEEEEecCCccccccc
Confidence 3554444333 334567899999999988765 4555555554332211111 1 11111111111
Q ss_pred ----------CcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhc--------CCceeeccCCCCHHHHHHHHHHh
Q 016375 238 ----------KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL--------GQRAIPISGHMSQSKRLGALNKF 299 (390)
Q Consensus 238 ----------~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~f 299 (390)
..+...+..++. .+.++||||++++.++.++..|.+. +..+..+|+++++.+|.++++.|
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred cccccccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 011222333333 3689999999999999999988764 45788999999999999999999
Q ss_pred ccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEecc--ccHHHHHHHHHHhCCcce
Q 016375 300 KAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQ--YELEWYLQIEKLIGMLYI 377 (390)
Q Consensus 300 ~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~ 377 (390)
++|++++||+|++++.|+|++++++||+++.|.+..+|+||+||+||.|++|.++++..+ .+...+...++.++.+.+
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e 405 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVE 405 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999999999999874 445566667788887776
Q ss_pred eeccc
Q 016375 378 LFSIE 382 (390)
Q Consensus 378 ~~~~~ 382 (390)
...++
T Consensus 406 ~~~~~ 410 (742)
T TIGR03817 406 ATVFD 410 (742)
T ss_pred cceeC
Confidence 65443
No 25
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-49 Score=331.18 Aligned_cols=366 Identities=34% Similarity=0.489 Sum_probs=318.1
Q ss_pred CCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCH
Q 016375 13 LGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (390)
Q Consensus 13 ~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 92 (390)
|..-.++.++++..||..|+|.|.++|+-+++|++++..+-||+|||+++++|.+-.+...........++.+|++.|++
T Consensus 225 Fq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptr 304 (629)
T KOG0336|consen 225 FQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTR 304 (629)
T ss_pred HhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccH
Confidence 35567888899999999999999999999999999999999999999999999877776655555556788899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccc
Q 016375 93 ELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND 172 (390)
Q Consensus 93 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~ 172 (390)
+|+.|..-+..++. .-++...++.|+.+..++...+..+.+|+++||..|.++...+ ..++..+.++|+|||++|++.
T Consensus 305 eLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n-~i~l~siTYlVlDEADrMLDM 382 (629)
T KOG0336|consen 305 ELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN-VINLASITYLVLDEADRMLDM 382 (629)
T ss_pred HHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC-eeeeeeeEEEEecchhhhhcc
Confidence 99999988877764 3357778888888888888889999999999999998876654 478899999999999999999
Q ss_pred ccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccc-cccccceeEEecCCCcchhHHHHHHHhh
Q 016375 173 DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS-TVDTLKQQYRFVPAKYKDCYLVYILTEV 251 (390)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (390)
+|...++.++-...+.+|+++-|||++..+..+...++++|.........- ....+.+.+.......+......++...
T Consensus 383 gFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~m 462 (629)
T KOG0336|consen 383 GFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANM 462 (629)
T ss_pred cccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998776665443 3334444453333444444445555544
Q ss_pred -CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecC
Q 016375 252 -SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI 330 (390)
Q Consensus 252 -~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~ 330 (390)
++.++||||..+..|+.+..-|.-.|+...-+||+-++.+|+..++.|++|+++|||+|+.+++|+|++++.+|+.||.
T Consensus 463 s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDF 542 (629)
T KOG0336|consen 463 SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDF 542 (629)
T ss_pred CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCC
Confidence 6899999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeec
Q 016375 331 PTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFS 380 (390)
Q Consensus 331 ~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
|.+..+|..|+||.||.|+.|..++|+..++..++..+-+.+....+.+|
T Consensus 543 P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevP 592 (629)
T KOG0336|consen 543 PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVP 592 (629)
T ss_pred CccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCc
Confidence 99999999999999999999999999999999998888887776655554
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-48 Score=334.10 Aligned_cols=364 Identities=38% Similarity=0.580 Sum_probs=312.1
Q ss_pred CCcccCCCCHHHHHHHHh-cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEE
Q 016375 8 KTFKELGLRDELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~-~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (390)
..|.+++++..+.+.|+. |++..|+..|.++++.++.+++++|.+.||||||++|++|+++.++.-...-....|..+|
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence 457888999999999987 7999999999999999999999999999999999999999999998655433344688999
Q ss_pred EEcCCHHHHHHHHHHHHHhccCC-CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEeh
Q 016375 87 VLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (390)
Q Consensus 87 il~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE 165 (390)
|++||++|+.|.++.++++.... .+--+.+.|++....+...+.++++|+|+||+.|.+++.+.+.+.++.+..+|+||
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDE 295 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDE 295 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecc
Confidence 99999999999999999987653 34445678888888888888899999999999999999999999999999999999
Q ss_pred hhhhcccccHHHHHHHHHhCCC-------------CccEEEEeecCchhHHHHHHHhcCCCeEEecCC-----c------
Q 016375 166 ADRLLNDDFEKSLDEILNVIPR-------------MRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS-----K------ 221 (390)
Q Consensus 166 ~H~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~-----~------ 221 (390)
++++.+-+|.+.+..+++.+.+ ..|.+++|||+...+.++...-+.+|..+.... .
T Consensus 296 aDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~ 375 (708)
T KOG0348|consen 296 ADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAV 375 (708)
T ss_pred hhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhh
Confidence 9999999999999988887622 247899999999999999998888887776111 0
Q ss_pred --------------cccccccceeEEecCCCcchhHHHHHHHhh----CCCceEEEecchhHHHHHHHHHHhc-------
Q 016375 222 --------------YSTVDTLKQQYRFVPAKYKDCYLVYILTEV----SASSTMVFTRTCDATRLLALMLRNL------- 276 (390)
Q Consensus 222 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~lvf~~~~~~~~~l~~~l~~~------- 276 (390)
......+.+.+..+|...+...+..++... ...++|||..+.+.++.=++.|...
T Consensus 376 ~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~ 455 (708)
T KOG0348|consen 376 QEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG 455 (708)
T ss_pred hhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccccc
Confidence 122334456677788888887777776544 4568999999999888777666431
Q ss_pred ---------------CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhcc
Q 016375 277 ---------------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRV 341 (390)
Q Consensus 277 ---------------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~ 341 (390)
+.++..+||.|++.+|..+++.|....-.||+||+.+.+|+|+|+++.||.|++|.++.+|+.|+
T Consensus 456 ~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRv 535 (708)
T KOG0348|consen 456 SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRV 535 (708)
T ss_pred ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHh
Confidence 34578899999999999999999998888999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEEeccccHHHHHHHHHH
Q 016375 342 GRTARAGRTGVAISLVNQYELEWYLQIEKL 371 (390)
Q Consensus 342 GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~ 371 (390)
||..|.|.+|..+.|+.+.+.+.+..++..
T Consensus 536 GRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 536 GRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred hhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999987777654
No 27
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.5e-47 Score=347.15 Aligned_cols=322 Identities=20% Similarity=0.259 Sum_probs=247.7
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+|+..++|+|.++++.+++++++++.+|||+|||++|++|++. .+..+||++|+++|+.|+.+.++.
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~------------~~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC------------SDGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH------------cCCcEEEEecHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999988874 345689999999999999999887
Q ss_pred hccCCCceEEEEecCCchHHHHH----hcCCCCCEEEeCCchhHHHhhcCCCc-cCCCccEEEEehhhhhcccc--cHHH
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTL----ALGKRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLNDD--FEKS 177 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~i~t~~~l~~~~~~~~~~-~~~~~~~iIiDE~H~~~~~~--~~~~ 177 (390)
.+ +....+.++........ ......+|+++||+.+.........+ ...++++|||||+|.+..++ |+..
T Consensus 74 ~g----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 74 SG----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred cC----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHH
Confidence 54 66677777665543222 12346899999999875422110111 35678999999999887643 5554
Q ss_pred HHH---HHHhCCCCccEEEEeecCchhHHHHHHHhc--CCCeEEecCCccccccccceeEEecCCC-cchhHHHHHHH-h
Q 016375 178 LDE---ILNVIPRMRQTYLFSATMTKKVKKLQRACL--KNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILT-E 250 (390)
Q Consensus 178 ~~~---~~~~~~~~~~~i~~saT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~ 250 (390)
+.. +...++. .+++++|||+++.........+ ..+..+...... +++ .+...... .....+..++. .
T Consensus 150 ~~~l~~l~~~~~~-~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r---~nl--~~~v~~~~~~~~~~l~~~l~~~ 223 (470)
T TIGR00614 150 YKALGSLKQKFPN-VPIMALTATASPSVREDILRQLNLKNPQIFCTSFDR---PNL--YYEVRRKTPKILEDLLRFIRKE 223 (470)
T ss_pred HHHHHHHHHHcCC-CceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCC---CCc--EEEEEeCCccHHHHHHHHHHHh
Confidence 443 3444443 5699999999987655443332 233333322211 111 12222221 22333444444 4
Q ss_pred hCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecC
Q 016375 251 VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI 330 (390)
Q Consensus 251 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~ 330 (390)
..+..+||||++++.++.+++.|.+.++.+..+|+++++.+|..+++.|.+|+++|||||.++++|+|+|+++.||+++.
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~ 303 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL 303 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhccccccCCCCcceEEEEeccccHHHHHHH
Q 016375 331 PTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (390)
Q Consensus 331 ~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~ 368 (390)
|.+...|.|++||+||.|.++.|++++++.+...+..+
T Consensus 304 P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~ 341 (470)
T TIGR00614 304 PKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRL 341 (470)
T ss_pred CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHH
Confidence 99999999999999999999999999998887666554
No 28
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-47 Score=323.74 Aligned_cols=375 Identities=35% Similarity=0.530 Sum_probs=332.0
Q ss_pred cccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCC
Q 016375 3 EEKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (390)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~ 82 (390)
-.+++..|.++++++++...++...+..++|.|.++++..+.+++++-.|.||||||-+++.|++..+....+. ..+.+
T Consensus 218 ~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL-~~g~g 296 (731)
T KOG0339|consen 218 PPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPEL-KPGEG 296 (731)
T ss_pred CCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhh-cCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999998887654432 23578
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEE
Q 016375 83 FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (390)
Q Consensus 83 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iI 162 (390)
+..||++|+++|+.|+..++++++...++++..++|+....++...+..++.|+|+||+.|...+.- +..++.+.+++|
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV 375 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLV 375 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeeeEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999998765 346789999999
Q ss_pred EehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchh
Q 016375 163 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242 (390)
Q Consensus 163 iDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (390)
+||+++|.+.+|...++.|.....+.+|.+++|||....++.+.+.++..++.+...........+.+....++...++.
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl 455 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKL 455 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHH
Confidence 99999999999999999999999999999999999999999999999999987766644444444555555666554432
Q ss_pred -HH-HHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCC
Q 016375 243 -YL-VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP 320 (390)
Q Consensus 243 -~~-~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~ 320 (390)
-+ ..+..-...+++|+|+.-+..++.++..|+-.++++..+||++.+.+|.+++..|+.+...|+++|+....|+|++
T Consensus 456 ~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 456 NWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 22 2233334678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceee
Q 016375 321 SVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILF 379 (390)
Q Consensus 321 ~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
.+++||.||...+...+.||+||.||.|.+|..++++++.+.++.-.+-+.+.-.-+.+
T Consensus 536 ~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnV 594 (731)
T KOG0339|consen 536 SIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNV 594 (731)
T ss_pred ccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999988877776665444433
No 29
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=8e-49 Score=324.41 Aligned_cols=366 Identities=35% Similarity=0.578 Sum_probs=326.0
Q ss_pred cccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCC--CCCC
Q 016375 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQR--TVPA 82 (390)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~--~~~~ 82 (390)
-++++|....++..+.+.|+..|+..|+|.|.+.++-++.|++.+-.+-||||||+++.+|++...++.....+ ...|
T Consensus 167 PPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999888776554333 3478
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHhccC------CCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 83 FFACVLSPTRELAIQISEQFEALGSG------ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 83 ~~~lil~P~~~l~~q~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
+..||+||+++|+.|.++-+..+... ..++.....|+.+...+........+|+|+||+.|.+.+.... ..+.
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~-~sLd 325 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKI-MSLD 325 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhh-ccHH
Confidence 89999999999999999887765332 2467788899999999988888999999999999999888744 6677
Q ss_pred CccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecC
Q 016375 157 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP 236 (390)
Q Consensus 157 ~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (390)
-..++.+||++++.+.+|.+.++.++..++..+|.+++|||++..+..+.+.-+-.|+.++....-+..-++.+...++.
T Consensus 326 ~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVk 405 (610)
T KOG0341|consen 326 ACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVK 405 (610)
T ss_pred HHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999998877766666667777777
Q ss_pred CCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCC
Q 016375 237 AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRG 316 (390)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G 316 (390)
...+...++..+++ ...+++|||..+..++.+.++|--.|..+..+||+.++++|...++.|+.|+-+|||+|+.++.|
T Consensus 406 qEaKiVylLeCLQK-T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKG 484 (610)
T KOG0341|consen 406 QEAKIVYLLECLQK-TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKG 484 (610)
T ss_pred hhhhhhhHHHHhcc-CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhcc
Confidence 78888777777776 34789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHH-HHHHHHHHh
Q 016375 317 LDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELE-WYLQIEKLI 372 (390)
Q Consensus 317 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~-~~~~~~~~~ 372 (390)
+|+|++.+||.||.|....+|..|+||.||.|++|.+.+|++....+ .+.+++..+
T Consensus 485 LDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL 541 (610)
T KOG0341|consen 485 LDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLL 541 (610)
T ss_pred CCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875543 333444443
No 30
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.1e-46 Score=355.47 Aligned_cols=341 Identities=21% Similarity=0.259 Sum_probs=261.0
Q ss_pred cCCcc--cCCCCHHHHHHHHh-cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCc
Q 016375 7 VKTFK--ELGLRDELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (390)
Q Consensus 7 ~~~~~--~~~~~~~~~~~l~~-~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 83 (390)
-++|. .+|++..+...++. +|+..+||.|.++++.++.|+++++.+|||+|||++|++|++. .+.
T Consensus 434 ~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~------------~~G 501 (1195)
T PLN03137 434 DKKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI------------CPG 501 (1195)
T ss_pred CccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH------------cCC
Confidence 34565 46778888887776 8999999999999999999999999999999999999999875 245
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc------CCCCCEEEeCCchhHHH--hhcC-CCc-
Q 016375 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL------GKRPHIVVATPGRLMDH--LTNT-KGF- 153 (390)
Q Consensus 84 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~i~t~~~l~~~--~~~~-~~~- 153 (390)
.+|||+|+++|+.++...+... ++....+.++.........+ ....+|+++||+.+... +.+. ..+
T Consensus 502 iTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~ 577 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLN 577 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhh
Confidence 6999999999998777777654 37777888877655443322 25689999999987531 1111 111
Q ss_pred cCCCccEEEEehhhhhcccc--cHHHHHH---HHHhCCCCccEEEEeecCchhHHHHHHHhcC--CCeEEecCCcccccc
Q 016375 154 SLGTLKYLVLDEADRLLNDD--FEKSLDE---ILNVIPRMRQTYLFSATMTKKVKKLQRACLK--NPVKIEAASKYSTVD 226 (390)
Q Consensus 154 ~~~~~~~iIiDE~H~~~~~~--~~~~~~~---~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 226 (390)
....+.+|||||||+++.++ |+..+.. +...++ ..+++++|||+++.+.......+. .+..+...-. .+
T Consensus 578 ~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp-~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~---Rp 653 (1195)
T PLN03137 578 SRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-NIPVLALTATATASVKEDVVQALGLVNCVVFRQSFN---RP 653 (1195)
T ss_pred hccccceeccCcchhhhhcccchHHHHHHHHHHHHhCC-CCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccC---cc
Confidence 13457899999999988754 6665554 334444 456899999999887764444333 2222222111 11
Q ss_pred ccceeEEecCCCcc-hhHHHHHHHh-hCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCc
Q 016375 227 TLKQQYRFVPAKYK-DCYLVYILTE-VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304 (390)
Q Consensus 227 ~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 304 (390)
++ .+...+...+ ...+..++.. ..+...||||.++..++.+++.|...|+.+..+|++++..+|..+++.|.+|++
T Consensus 654 NL--~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei 731 (1195)
T PLN03137 654 NL--WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEI 731 (1195)
T ss_pred ce--EEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCC
Confidence 21 2333332221 2334444443 346789999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHH
Q 016375 305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIE 369 (390)
Q Consensus 305 ~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~ 369 (390)
+|||||.++++|+|+|+++.||+++.|.+...|.|++||+||.|..+.|++|++..+...+..+-
T Consensus 732 ~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 732 NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred cEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887776555443
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-47 Score=349.83 Aligned_cols=372 Identities=34% Similarity=0.562 Sum_probs=337.0
Q ss_pred ccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCc
Q 016375 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 83 (390)
++++.+|.+++++..+..-++++|+..+++.|.+||++|+.|+++|..+-||||||++|++|++..... ......+.|+
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~d-Qr~~~~gdGP 439 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKD-QRPLEEGDGP 439 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhc-CCChhhCCCc
Confidence 467999999999999999999999999999999999999999999999999999999999999844332 2222335699
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhc--CCCccCCCccEE
Q 016375 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTN--TKGFSLGTLKYL 161 (390)
Q Consensus 84 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~--~~~~~~~~~~~i 161 (390)
.++|++|+++|+.|+.+++.++...+++.+++..|+.............+.|+|+||+.+...+.. ++..++.+.-++
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~l 519 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYL 519 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccccccccee
Confidence 999999999999999999999999999999999999999999999998999999999999886643 343446666799
Q ss_pred EEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecC-CCcc
Q 016375 162 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKYK 240 (390)
Q Consensus 162 IiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 240 (390)
|+||++++.+..|......+++.++..+|.+++|||.+..+..+....+..|..+........-..+.+.+..++ ...+
T Consensus 520 v~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eK 599 (997)
T KOG0334|consen 520 VLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEK 599 (997)
T ss_pred eechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHH
Confidence 999999999988998888899999999999999999999999999999999988888877777778888888888 7888
Q ss_pred hhHHHHHHHhh-CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCC
Q 016375 241 DCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDI 319 (390)
Q Consensus 241 ~~~~~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~ 319 (390)
...+..++.+. .+.+++|||.++..+..+.+-|.+.++++..+||+.+..+|+..+++|+++.+.+|++|+.+..|+|+
T Consensus 600 f~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv 679 (997)
T KOG0334|consen 600 FLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDV 679 (997)
T ss_pred HHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccccc
Confidence 88888888766 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcc
Q 016375 320 PSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLY 376 (390)
Q Consensus 320 ~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 376 (390)
+.+..||+|+.|..+.+|..|.||.||.|.+|.+++|+.+.+.+....|.+.+...-
T Consensus 680 ~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~ 736 (997)
T KOG0334|consen 680 KELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSK 736 (997)
T ss_pred ccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999988874433
No 32
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-47 Score=328.89 Aligned_cols=369 Identities=38% Similarity=0.596 Sum_probs=309.5
Q ss_pred cCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcC-CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCC-------
Q 016375 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQR------- 78 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~------- 78 (390)
+.-|.++++|.++.+.|..+||..|++.|.-.++.+..+ .+++-.|.||||||++|-+|+++.+.+......
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 567899999999999999999999999999999999988 689999999999999999999996654221111
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCc--cCC
Q 016375 79 TVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF--SLG 156 (390)
Q Consensus 79 ~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~--~~~ 156 (390)
..+....||++||++|+.|+.+.+..+....++++..+.|+....++...+...++|||+||+.|+..+.....+ .+.
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 123335999999999999999999999999999999999999999999888889999999999999988876542 367
Q ss_pred CccEEEEehhhhhcccccHHHHHHHHHhCC-----CCccEEEEeecCchh---------------------HHHHHHH--
Q 016375 157 TLKYLVLDEADRLLNDDFEKSLDEILNVIP-----RMRQTYLFSATMTKK---------------------VKKLQRA-- 208 (390)
Q Consensus 157 ~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~-----~~~~~i~~saT~~~~---------------------~~~~~~~-- 208 (390)
++.++|+||+++|...+....+..+++.++ ..+|.+.+|||+.-. ++.+.+.
T Consensus 340 ~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig 419 (731)
T KOG0347|consen 340 KVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIG 419 (731)
T ss_pred hceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhC
Confidence 889999999999999888888888877665 346899999997432 1222221
Q ss_pred hcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCC
Q 016375 209 CLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMS 288 (390)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 288 (390)
+...|..+...........+......++...+...+.+++... .+++|||||+.+.+.++.-+|+..+++...+|..|.
T Consensus 420 ~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~ 498 (731)
T KOG0347|consen 420 FRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMI 498 (731)
T ss_pred ccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHH
Confidence 2233455555544444444444444455555555555555543 478999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHH
Q 016375 289 QSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (390)
Q Consensus 289 ~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~ 368 (390)
+.+|...+++|.+....|||||+.+.+|+|+|++.+||||-.|.+...|+.|.||.+|.++.|..+.++.+.+...+..+
T Consensus 499 QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL 578 (731)
T KOG0347|consen 499 QKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKL 578 (731)
T ss_pred HHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcc
Q 016375 369 EKLIGMLY 376 (390)
Q Consensus 369 ~~~~~~~~ 376 (390)
++.+.+..
T Consensus 579 ~ktL~k~~ 586 (731)
T KOG0347|consen 579 CKTLKKKE 586 (731)
T ss_pred HHHHhhcc
Confidence 98886643
No 33
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.5e-45 Score=346.61 Aligned_cols=332 Identities=20% Similarity=0.264 Sum_probs=256.1
Q ss_pred CCCHHHHHHHHh-cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCH
Q 016375 14 GLRDELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (390)
Q Consensus 14 ~~~~~~~~~l~~-~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 92 (390)
+.++...+.|+. +|+..++|+|.++++.+.+++++++.+|||+|||++|++|++. ....+||++|++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~------------~~g~tlVisPl~ 75 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALV------------LDGLTLVVSPLI 75 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHH------------cCCCEEEEecHH
Confidence 445555666766 7999999999999999999999999999999999999988874 234689999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhh
Q 016375 93 ELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR 168 (390)
Q Consensus 93 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~ 168 (390)
+|+.|+.+.++..+ +....+.+.......... .....+++++||+.+....... .+...++++|||||+|+
T Consensus 76 sL~~dqv~~l~~~g----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~-~l~~~~l~~iVIDEaH~ 150 (607)
T PRK11057 76 SLMKDQVDQLLANG----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE-HLAHWNPALLAVDEAHC 150 (607)
T ss_pred HHHHHHHHHHHHcC----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH-HHhhCCCCEEEEeCccc
Confidence 99999999998764 566666666655443221 2346889999999886422211 12345689999999998
Q ss_pred hcccc--cHHHHH---HHHHhCCCCccEEEEeecCchhHHHHHHHh--cCCCeEEecCCccccccccceeEEecCCCcch
Q 016375 169 LLNDD--FEKSLD---EILNVIPRMRQTYLFSATMTKKVKKLQRAC--LKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD 241 (390)
Q Consensus 169 ~~~~~--~~~~~~---~~~~~~~~~~~~i~~saT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (390)
+..++ |+..+. .+...++. .+++++|||+++......... +..+......... +++ .+.........
T Consensus 151 i~~~G~~fr~~y~~L~~l~~~~p~-~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r---~nl--~~~v~~~~~~~ 224 (607)
T PRK11057 151 ISQWGHDFRPEYAALGQLRQRFPT-LPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDR---PNI--RYTLVEKFKPL 224 (607)
T ss_pred cccccCcccHHHHHHHHHHHhCCC-CcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCC---Ccc--eeeeeeccchH
Confidence 87643 544433 34444443 569999999988765433322 2333333222111 111 22223333344
Q ss_pred hHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCC
Q 016375 242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321 (390)
Q Consensus 242 ~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~ 321 (390)
..+...+....+.++||||++++.++.+++.|.+.++.+..+|++++..+|..+++.|.+|+.+|||||+++++|+|+|+
T Consensus 225 ~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~ 304 (607)
T PRK11057 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPN 304 (607)
T ss_pred HHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCC
Confidence 55566666677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHH
Q 016375 322 VDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (390)
Q Consensus 322 ~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~ 368 (390)
++.||+++.|.|...|.|++||+||.|.++.|++|+++.+...+..+
T Consensus 305 V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred cCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887665443
No 34
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-46 Score=309.00 Aligned_cols=369 Identities=34% Similarity=0.544 Sum_probs=337.1
Q ss_pred cCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEE
Q 016375 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (390)
+.+|++..|++++.+.+.+.||..|+..|+.|+..+.+|.++...+.+|+|||.++..+++..+.-. .....++
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~------~ke~qal 98 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS------VKETQAL 98 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc------hHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999888888776321 1344689
Q ss_pred EEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc-CCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEeh
Q 016375 87 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (390)
Q Consensus 87 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE 165 (390)
+++|+++|+.|..+....++...+..+....|+.....+.... ...++|+++||+.+...+... .+....+.+.++||
T Consensus 99 ilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDE 177 (397)
T KOG0327|consen 99 ILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDE 177 (397)
T ss_pred HhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecc
Confidence 9999999999999999999988899999888888877554443 446899999999999988876 46677899999999
Q ss_pred hhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHH
Q 016375 166 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLV 245 (390)
Q Consensus 166 ~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (390)
++.+...++.+.+..+.+.++...|++++|||.+.++....+.++..|..+......-....+.+.+.......+...+.
T Consensus 178 aDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~ 257 (397)
T KOG0327|consen 178 ADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLC 257 (397)
T ss_pred hHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHH
Confidence 99999999999999999999999999999999999999999999999998888777777788888888888877888787
Q ss_pred HHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEE
Q 016375 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV 325 (390)
Q Consensus 246 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~v 325 (390)
.+.. .-...++|||+.+.+..+...|.+++..+..+|+.+.+.+|..++..|+.|..+|||+|..++.|+|+..+..|
T Consensus 258 dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 258 DLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 7777 56778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeeccccc
Q 016375 326 INYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIEAT 384 (390)
Q Consensus 326 i~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
++|+.|....+|+.|+||+||.|.+|.++.++.+.+...+++++++|..+++++|.+..
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~ 394 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFA 394 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchh
Confidence 99999999999999999999999999999999999999999999999999999987654
No 35
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=9.5e-45 Score=342.47 Aligned_cols=323 Identities=21% Similarity=0.332 Sum_probs=254.7
Q ss_pred HHHh-cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHH
Q 016375 22 ACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 100 (390)
Q Consensus 22 ~l~~-~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 100 (390)
.|+. +|+.+++|.|.++++.+++++++++.+|||+|||++|++|++. .+..++|++|+++|..|+.+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~------------~~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL------------LKGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH------------cCCcEEEEcCCHHHHHHHHH
Confidence 4544 8999999999999999999999999999999999999988773 34468999999999999999
Q ss_pred HHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcc--ccc
Q 016375 101 QFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN--DDF 174 (390)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~--~~~ 174 (390)
.++..+ +.+..++++......... .....+++++||+.+....... .....++++|||||+|.++. .+|
T Consensus 72 ~l~~~g----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~-~l~~~~l~~iViDEaH~i~~~g~~f 146 (591)
T TIGR01389 72 QLRAAG----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN-MLQRIPIALVAVDEAHCVSQWGHDF 146 (591)
T ss_pred HHHHcC----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH-HHhcCCCCEEEEeCCcccccccCcc
Confidence 998864 677777777765543322 2357899999999986432221 13356789999999998876 345
Q ss_pred HHHHHHH---HHhCCCCccEEEEeecCchhHHHHHHHhcC--CCeEEecCCccccccccceeEEecCCCcchhHHHHHHH
Q 016375 175 EKSLDEI---LNVIPRMRQTYLFSATMTKKVKKLQRACLK--NPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT 249 (390)
Q Consensus 175 ~~~~~~~---~~~~~~~~~~i~~saT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (390)
+..+..+ ...++..+ ++++|||+++.........+. .+..+..... .++ ..+.......+...+..++.
T Consensus 147 rp~y~~l~~l~~~~~~~~-vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~n--l~~~v~~~~~~~~~l~~~l~ 220 (591)
T TIGR01389 147 RPEYQRLGSLAERFPQVP-RIALTATADAETRQDIRELLRLADANEFITSFD---RPN--LRFSVVKKNNKQKFLLDYLK 220 (591)
T ss_pred HHHHHHHHHHHHhCCCCC-EEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCC---CCC--cEEEEEeCCCHHHHHHHHHH
Confidence 5544443 44555554 999999999877654444432 2332222111 111 12333334445556667777
Q ss_pred hhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEec
Q 016375 250 EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD 329 (390)
Q Consensus 250 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~ 329 (390)
...+.++||||+++..++.+++.|...++++..+|++++..+|..+++.|.+|+++|||||.++++|+|+|+++.||+++
T Consensus 221 ~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~ 300 (591)
T TIGR01389 221 KHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYD 300 (591)
T ss_pred hcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcC
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhccccccCCCCcceEEEEeccccHHHHHH
Q 016375 330 IPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQ 367 (390)
Q Consensus 330 ~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~ 367 (390)
.|.|...|.|++||+||.|+.+.|++++++.+...+..
T Consensus 301 ~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~ 338 (591)
T TIGR01389 301 MPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKR 338 (591)
T ss_pred CCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHH
Confidence 99999999999999999999999999998877655443
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-45 Score=313.29 Aligned_cols=364 Identities=35% Similarity=0.554 Sum_probs=301.3
Q ss_pred ccCCcccCCCCHHHHHH----------HHhcCCCCCchHHHhhHHhHhc---------CCCEEEEcCCCCchhHHhHHHH
Q 016375 6 EVKTFKELGLRDELVEA----------CENVGWKTPSKIQAEAIPHALE---------GKDLIGLAQTGSGKTGAFALPI 66 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~----------l~~~g~~~~~~~Q~~~~~~i~~---------~~~~li~~~tG~GKT~~~~~~~ 66 (390)
....|+.++.++..... +..+++.+++|.|...+++++. .+++++.||||||||++|.+|+
T Consensus 125 slq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPI 204 (620)
T KOG0350|consen 125 SLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPI 204 (620)
T ss_pred ceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHH
Confidence 34456666766665443 7789999999999999999853 4679999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCC-----CCCEEEeCCc
Q 016375 67 LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGK-----RPHIVVATPG 141 (390)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~i~t~~ 141 (390)
...+.+. ..+..+++||+|++.|+.|++..+..++...++.++.+.|..+...+...+.. ..||+|+||+
T Consensus 205 VQ~L~~R-----~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPG 279 (620)
T KOG0350|consen 205 VQLLSSR-----PVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPG 279 (620)
T ss_pred HHHHccC-----CccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCch
Confidence 9888652 22557899999999999999999999999999999998888877666555433 3589999999
Q ss_pred hhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCC---------------------------------
Q 016375 142 RLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM--------------------------------- 188 (390)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~--------------------------------- 188 (390)
.|.+++.+.+.+++..+.++||||++++.+..|..++..+.......
T Consensus 280 RLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~ 359 (620)
T KOG0350|consen 280 RLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYP 359 (620)
T ss_pred HHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCc
Confidence 99999999999999999999999999999877766666554433211
Q ss_pred -ccEEEEeecCchhHHHHHHHhcCCCeEEecC----CccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecch
Q 016375 189 -RQTYLFSATMTKKVKKLQRACLKNPVKIEAA----SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTC 263 (390)
Q Consensus 189 -~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~ 263 (390)
.+.+.+|||+..+-..+....++.|...... ..+.....+.+.........+-..+..++......++|+|+++.
T Consensus 360 ~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~ 439 (620)
T KOG0350|consen 360 PLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSV 439 (620)
T ss_pred hhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecch
Confidence 1366778888877777777777777444333 34455556666666666777888888899988999999999999
Q ss_pred hHHHHHHHHHH-h---cCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhh
Q 016375 264 DATRLLALMLR-N---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 339 (390)
Q Consensus 264 ~~~~~l~~~l~-~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q 339 (390)
+.+.+++..|+ . .+.++-.++|..+.+.|...++.|..|++.+|||++++.+|+|+.+++.||.|++|.+...|.+
T Consensus 440 ~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVH 519 (620)
T KOG0350|consen 440 SSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVH 519 (620)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHH
Confidence 99999999998 3 2455666888999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcceEEEEeccccHHHHHHHHHHhCC
Q 016375 340 RVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGM 374 (390)
Q Consensus 340 ~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 374 (390)
|+||.+|.|+.|.|+++++..+...+..+-+..+.
T Consensus 520 R~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 520 RAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred hhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 99999999999999999999888877777665544
No 37
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-45 Score=300.72 Aligned_cols=367 Identities=31% Similarity=0.489 Sum_probs=316.1
Q ss_pred cCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcC--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCce
Q 016375 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (390)
+++|+.++|..++.+.+..|+|..|+..|..+++.++.. ++.+-.+..|+|||.++.+.++.++.-.. ..+.
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~------~~PQ 162 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV------VVPQ 162 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc------cCCC
Confidence 688999999999999999999999999999999999975 57999999999999999888887654322 5566
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEe
Q 016375 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (390)
Q Consensus 85 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiD 164 (390)
++.++|+++|+.|.-+-+.+++.-.++.......+... ++. -.-..+|+|+||+.+.+++...+.+++..+...|+|
T Consensus 163 ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~-~rG--~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlD 239 (477)
T KOG0332|consen 163 CICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKA-KRG--NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLD 239 (477)
T ss_pred ceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccc-ccC--CcchhheeeCCCccHHHHHHHHHhhChhhceEEEec
Confidence 88889999999999999999988766665554444311 111 111368999999999999998777888999999999
Q ss_pred hhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCC-cchh
Q 016375 165 EADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDC 242 (390)
Q Consensus 165 E~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 242 (390)
||+.+.+ .+|.+.-..+...+++..|++++|||....+..+......++..+....+.-....+.+.+..++.. .+..
T Consensus 240 EAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~ 319 (477)
T KOG0332|consen 240 EADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQ 319 (477)
T ss_pred chhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHH
Confidence 9999988 5688888899999999999999999999999999999999999988888888888888888777764 4455
Q ss_pred HHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC
Q 016375 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (390)
Q Consensus 243 ~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~ 322 (390)
.+..+..-..-+..||||.++..|..++..+.+.|..+..+||++...+|..++..|+.|..+|||+|+.+.+|+|++.+
T Consensus 320 ~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qV 399 (477)
T KOG0332|consen 320 ALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQV 399 (477)
T ss_pred HHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceE
Confidence 66666666677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCC------CCcchhhhccccccCCCCcceEEEEeccc-cHHHHHHHHHHhCCcceeeccc
Q 016375 323 DMVINYDIP------TNSKDYIHRVGRTARAGRTGVAISLVNQY-ELEWYLQIEKLIGMLYILFSIE 382 (390)
Q Consensus 323 ~~vi~~~~~------~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
+.||.||.| .++..|++|+||.||.|++|.++.+++.. ....+..|+++++...+.+.-+
T Consensus 400 s~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~ 466 (477)
T KOG0332|consen 400 SVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPD 466 (477)
T ss_pred EEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCc
Confidence 999999998 47779999999999999999999999864 5567779999998776655433
No 38
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.9e-45 Score=322.46 Aligned_cols=351 Identities=29% Similarity=0.489 Sum_probs=317.2
Q ss_pred ccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCc
Q 016375 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 83 (390)
+..+++|+++.|..++...|+..+|..+++.|..|++.+..+-+.++.+..|+|||++|...++..+.... ...
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~------~~~ 94 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS------SHI 94 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc------Ccc
Confidence 45688999999999999999999999999999999999999999999999999999998877776654322 566
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccC-CCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEE
Q 016375 84 FACVLSPTRELAIQISEQFEALGSG-ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (390)
Q Consensus 84 ~~lil~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iI 162 (390)
+.+|++||++++.|..+.+..++.. .+.+|.++.|++........+. +++|+|+||+.+..++... .++++.++++|
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~-~~n~s~vrlfV 172 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELG-AMNMSHVRLFV 172 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhc-CCCccceeEEE
Confidence 7899999999999999999998774 4799999999998877666554 4889999999999988875 48899999999
Q ss_pred Eehhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCC---
Q 016375 163 LDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK--- 238 (390)
Q Consensus 163 iDE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 238 (390)
+|||+.+.+ ..|...+..+.+.+|..+|++.+|||.+.+++.....++.+|..++........-++.+.+......
T Consensus 173 LDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nns 252 (980)
T KOG4284|consen 173 LDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNS 252 (980)
T ss_pred eccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcch
Confidence 999999888 7899999999999999999999999999999999999999999999999888888888887776654
Q ss_pred -----cchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCC
Q 016375 239 -----YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVA 313 (390)
Q Consensus 239 -----~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~ 313 (390)
.+...+..++...+-...||||+....|+-++.+|.+.|+++..++|.|++.+|..+.+.+++-.++|||+|+..
T Consensus 253 veemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLt 332 (980)
T KOG4284|consen 253 VEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLT 332 (980)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchh
Confidence 345556666677777889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccH
Q 016375 314 SRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (390)
Q Consensus 314 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~ 362 (390)
.+|+|-+++..||.+|.|.+...|..|+||+||.|..|..++|+.....
T Consensus 333 aRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 333 ARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred hccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999999987554
No 39
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-44 Score=302.87 Aligned_cols=366 Identities=38% Similarity=0.608 Sum_probs=341.6
Q ss_pred CCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEE
Q 016375 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 87 (390)
-.|++++|+-...+++..-||..|+|.|++.++.++++++++-.+-||+|||.++++|+++.+.... ..+.++++
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Rali 95 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRALI 95 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----ccccceee
Confidence 3589999999999999999999999999999999999999999999999999999999999987654 25778999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhh
Q 016375 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (390)
Q Consensus 88 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H 167 (390)
++|+++|+.|.....+.++..+++++.++.|+....+++..+..++||+++||..+......-. +.++.+.+||+||++
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~-l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT-LTLSSVEYVVFDEAD 174 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee-ccccceeeeeehhhh
Confidence 9999999999999999999999999999999999999999999999999999999988766544 668889999999999
Q ss_pred hhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHH
Q 016375 168 RLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI 247 (390)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (390)
++...+|.+.+.+++..++...|.+++|||++..+..+.+..+.+|..++...+..........+..+....+...+..+
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888888888888888999999999988
Q ss_pred HHhh-CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEE
Q 016375 248 LTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI 326 (390)
Q Consensus 248 ~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi 326 (390)
+... .+..++||+.+...++.+...|...|..+..+.+.+++.-|..-+++|..++..++|.|+.+.+|+|+|-++.||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 8865 356899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceee
Q 016375 327 NYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILF 379 (390)
Q Consensus 327 ~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
.|+.|.+..-|..|+||+.|.|..|..|.++.+.+...+.++.-++|+++...
T Consensus 335 nyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~ 387 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFA 387 (529)
T ss_pred cccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeec
Confidence 99999999999999999999999999999999999999999999999987543
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.4e-43 Score=337.53 Aligned_cols=337 Identities=24% Similarity=0.287 Sum_probs=250.7
Q ss_pred CcccCCCCHHHHHHHHhcCCCCCchHHHhhHHh-HhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEE
Q 016375 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPH-ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (390)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~-i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 87 (390)
.|+++++++.+.+.++..|+.+|+|+|.++++. +..++++++.+|||+|||+++.++++..+. ++++++|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~---------~~~kal~ 72 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA---------RGGKALY 72 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh---------cCCcEEE
Confidence 578899999999999999999999999999988 678899999999999999999999888774 3567999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhh
Q 016375 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (390)
Q Consensus 88 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H 167 (390)
++|+++|+.|+.+.++.+.. .++++..++|+...... ....++|+|+||+++...+.+.. ..+.+++++|+||+|
T Consensus 73 i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~-~~l~~v~lvViDE~H 147 (737)
T PRK02362 73 IVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGA-PWLDDITCVVVDEVH 147 (737)
T ss_pred EeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcCh-hhhhhcCEEEEECcc
Confidence 99999999999999998743 46888888888754432 23458999999999988777543 336789999999999
Q ss_pred hhcccccHHHHHHHHHhC---CCCccEEEEeecCchhHHHHHHHhcCC-------CeEEecCCccccccccceeEEecCC
Q 016375 168 RLLNDDFEKSLDEILNVI---PRMRQTYLFSATMTKKVKKLQRACLKN-------PVKIEAASKYSTVDTLKQQYRFVPA 237 (390)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~---~~~~~~i~~saT~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (390)
.+.+..++..+..++..+ +...|++++|||+++..+ +..-.... |..+.....................
T Consensus 148 ~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~-la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~ 226 (737)
T PRK02362 148 LIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADE-LADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEV 226 (737)
T ss_pred ccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHH-HHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCC
Confidence 887777776666655443 456789999999876322 22211101 0000000000000000000011111
Q ss_pred CcchhHHHHHHHh-hCCCceEEEecchhHHHHHHHHHHhcC------------------------------------Cce
Q 016375 238 KYKDCYLVYILTE-VSASSTMVFTRTCDATRLLALMLRNLG------------------------------------QRA 280 (390)
Q Consensus 238 ~~~~~~~~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~------------------------------------~~~ 280 (390)
..+...+..+... ..++++||||++++.++.++..|.... ..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gv 306 (737)
T PRK02362 227 PSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGA 306 (737)
T ss_pred ccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCE
Confidence 1112222222221 257899999999999998888776431 246
Q ss_pred eeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEE----ec-----CCCCcchhhhccccccCCCCc-
Q 016375 281 IPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----YD-----IPTNSKDYIHRVGRTARAGRT- 350 (390)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~----~~-----~~~~~~~~~Q~~GR~~R~~~~- 350 (390)
..+|++++..+|..+++.|++|.++||+||+.+++|+|+|..++||. |+ .|.+..+|.|++||+||.|.+
T Consensus 307 a~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~ 386 (737)
T PRK02362 307 AFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDP 386 (737)
T ss_pred EeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCC
Confidence 78899999999999999999999999999999999999999888885 54 578889999999999999865
Q ss_pred -ceEEEEeccc
Q 016375 351 -GVAISLVNQY 360 (390)
Q Consensus 351 -~~~i~~~~~~ 360 (390)
|.++++..+.
T Consensus 387 ~G~~ii~~~~~ 397 (737)
T PRK02362 387 YGEAVLLAKSY 397 (737)
T ss_pred CceEEEEecCc
Confidence 8888888664
No 41
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.1e-42 Score=297.01 Aligned_cols=323 Identities=25% Similarity=0.260 Sum_probs=249.3
Q ss_pred CCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccC
Q 016375 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 108 (390)
.++|.||..+....+.+ +++++.|||.|||+.+++.+...+.. .++++|+++||+.|+.|.++.+.+...-
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~--------~~~kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW--------FGGKVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh--------cCCeEEEecCCchHHHHHHHHHHHHhCC
Confidence 47899999999888864 99999999999999988777766665 3448999999999999999999998877
Q ss_pred CCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCC
Q 016375 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188 (390)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~ 188 (390)
....++.++|......+...|.. .+|+|+||+.+.+.+..+. +++.+++++|+||||+...+...-.+....-..+++
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Gr-id~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~ 162 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGR-IDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKN 162 (542)
T ss_pred ChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCc-cChHHceEEEechhhhccCcchHHHHHHHHHHhccC
Confidence 77788899999999888877765 8999999999999998865 889999999999999988866555555555556677
Q ss_pred ccEEEEeecCchhHHHHHHHh---cCCCeEEecCCccccccccce-e---------------------------------
Q 016375 189 RQTYLFSATMTKKVKKLQRAC---LKNPVKIEAASKYSTVDTLKQ-Q--------------------------------- 231 (390)
Q Consensus 189 ~~~i~~saT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~--------------------------------- 231 (390)
+.++++||||..+.+.+.+-. .-+.+.++.+......+.+.. .
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~ 242 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKEL 242 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 789999999877554433221 111111111111100000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 016375 232 -------------------------------------------------------------------------------- 231 (390)
Q Consensus 232 -------------------------------------------------------------------------------- 231 (390)
T Consensus 243 g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~ 322 (542)
T COG1111 243 GVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322 (542)
T ss_pred CceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHH
Confidence
Q ss_pred ------------------EEecCCCcchhHHHHHHH----hhCCCceEEEecchhHHHHHHHHHHhcCCcee--e-----
Q 016375 232 ------------------YRFVPAKYKDCYLVYILT----EVSASSTMVFTRTCDATRLLALMLRNLGQRAI--P----- 282 (390)
Q Consensus 232 ------------------~~~~~~~~~~~~~~~~~~----~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~--~----- 282 (390)
........+...+..+++ ...+.++|||++.+..|+.+.++|.+.+..+. .
T Consensus 323 ~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~ 402 (542)
T COG1111 323 SLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQAS 402 (542)
T ss_pred HHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccc
Confidence 000001233333333333 23567899999999999999999999887763 2
Q ss_pred --ccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccc
Q 016375 283 --ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY 360 (390)
Q Consensus 283 --~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~ 360 (390)
.+.+|++.++.++++.|++|+++|||||+..++|+|+|.++.||+|++..|+..++||.||.||. ++|.+++++.++
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 23569999999999999999999999999999999999999999999999999999999999997 789999999887
Q ss_pred cHH
Q 016375 361 ELE 363 (390)
Q Consensus 361 ~~~ 363 (390)
+.+
T Consensus 482 trd 484 (542)
T COG1111 482 TRD 484 (542)
T ss_pred chH
Confidence 543
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=9e-43 Score=338.72 Aligned_cols=359 Identities=23% Similarity=0.298 Sum_probs=253.4
Q ss_pred CCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 15 ~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
++..+.+.++. ++..|+|+|.++++.+.+++++++.+|||+|||+++.+|++..+...........+.++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666676665 78899999999999999999999999999999999999999888754322221246789999999999
Q ss_pred HHHHHHHHHH-------h----ccCC-CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCC-ccCCCccEE
Q 016375 95 AIQISEQFEA-------L----GSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYL 161 (390)
Q Consensus 95 ~~q~~~~~~~-------~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~-~~~~~~~~i 161 (390)
+.|+.+.+.. + +... ++.+...+|+.....+.....+.++|+|+||++|...+.+... ..+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9998876542 2 2233 6788899999988877777777899999999999877655431 136789999
Q ss_pred EEehhhhhcccccHHHHH----HHHHhCCCCccEEEEeecCchhHHHHHHHhcCC-------CeEEecCCccccccccce
Q 016375 162 VLDEADRLLNDDFEKSLD----EILNVIPRMRQTYLFSATMTKKVKKLQRACLKN-------PVKIEAASKYSTVDTLKQ 230 (390)
Q Consensus 162 IiDE~H~~~~~~~~~~~~----~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 230 (390)
|+||+|.+.+...+..+. .+....+...|.+++|||+.+. +......... +..+.... .. .....
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~-~~--k~~~i 252 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDAR-FV--KPFDI 252 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccC-CC--ccceE
Confidence 999999888765554443 3333344567899999998763 2222222111 11111100 00 00000
Q ss_pred eEE-------ecCCCcchhHHHHHHHh--hCCCceEEEecchhHHHHHHHHHHhc------CCceeeccCCCCHHHHHHH
Q 016375 231 QYR-------FVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNL------GQRAIPISGHMSQSKRLGA 295 (390)
Q Consensus 231 ~~~-------~~~~~~~~~~~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~~~~~ 295 (390)
... ..........+...+.+ ..+.++||||++++.++.++..|.+. +..+..+||+++..+|..+
T Consensus 253 ~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 253 KVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred EEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 000 00111111112222221 14678999999999999999999873 3578999999999999999
Q ss_pred HHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCC-CCcceEEEEe-cccc-HHHHHHHHHHh
Q 016375 296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARA-GRTGVAISLV-NQYE-LEWYLQIEKLI 372 (390)
Q Consensus 296 ~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~-~~~~~~i~~~-~~~~-~~~~~~~~~~~ 372 (390)
++.|++|++++||||+.++.|+|+|++++||+++.|.+...|.||+||+||. |..+..+++. +..+ .+....++...
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~ 412 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAR 412 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987 3333333333 3333 23333344444
Q ss_pred CCccee
Q 016375 373 GMLYIL 378 (390)
Q Consensus 373 ~~~~~~ 378 (390)
...++.
T Consensus 413 ~~~ie~ 418 (876)
T PRK13767 413 EGKIDR 418 (876)
T ss_pred hCCCCC
Confidence 444443
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.3e-41 Score=327.11 Aligned_cols=333 Identities=20% Similarity=0.204 Sum_probs=250.8
Q ss_pred CCCCHHHHH-HHHhcCCCCCchHHHhhHHhHhcC------CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceE
Q 016375 13 LGLRDELVE-ACENVGWKTPSKIQAEAIPHALEG------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (390)
Q Consensus 13 ~~~~~~~~~-~l~~~g~~~~~~~Q~~~~~~i~~~------~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (390)
++.+.+..+ ..+.+|| ++++.|.++++.+.++ .+.++++|||+|||.+++.+++..+. .++++
T Consensus 434 ~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~---------~g~qv 503 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL---------DGKQV 503 (926)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH---------hCCeE
Confidence 344455544 5556899 6999999999999874 58999999999999999988887764 35689
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh---c-CCCCCEEEeCCchhHHHhhcCCCccCCCccEE
Q 016375 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA---L-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (390)
Q Consensus 86 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~i 161 (390)
+|++||+.|+.|+++.++++....++++..+++.......... + ...++|+|+||..+ . +.+.+.+++++
T Consensus 504 lvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~ll 577 (926)
T TIGR00580 504 AVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLL 577 (926)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h--CCCCcccCCEE
Confidence 9999999999999999999887778888888887664433322 2 24689999999433 1 23467889999
Q ss_pred EEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcch
Q 016375 162 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD 241 (390)
Q Consensus 162 IiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (390)
||||+|++. ......+..++...++++|||||.+....+......++..+....... ..+..... +.. ..
T Consensus 578 VIDEahrfg-----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R--~~V~t~v~--~~~-~~ 647 (926)
T TIGR00580 578 IIDEEQRFG-----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR--LPVRTFVM--EYD-PE 647 (926)
T ss_pred Eeecccccc-----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc--cceEEEEE--ecC-HH
Confidence 999999743 233445556667788999999998876555444444554444332211 11111111 111 11
Q ss_pred hHHHHHHHh-hCCCceEEEecchhHHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCC
Q 016375 242 CYLVYILTE-VSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLD 318 (390)
Q Consensus 242 ~~~~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d 318 (390)
.....+..+ ..++++++||++++.++.+++.|++. +.++..+||.|+..+|.++++.|.+|+.+|||||+++++|+|
T Consensus 648 ~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GID 727 (926)
T TIGR00580 648 LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGID 727 (926)
T ss_pred HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccc
Confidence 111222222 25788999999999999999999985 678999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCC-CCcchhhhccccccCCCCcceEEEEeccc------cHHHHHHHHHH
Q 016375 319 IPSVDMVINYDIP-TNSKDYIHRVGRTARAGRTGVAISLVNQY------ELEWYLQIEKL 371 (390)
Q Consensus 319 ~~~~~~vi~~~~~-~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~------~~~~~~~~~~~ 371 (390)
+|++++||+++.+ .+...|.|+.||+||.|+.|.|+.++.+. ..+.+..+++.
T Consensus 728 Ip~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 728 IPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 9999999999886 46678999999999999999999998653 34555555554
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-41 Score=327.70 Aligned_cols=335 Identities=21% Similarity=0.256 Sum_probs=252.5
Q ss_pred CcccCCCCHHHHHHHHhcCCCCCchHHHhhHHh-HhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEE
Q 016375 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPH-ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (390)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~-i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 87 (390)
+|+++++++.+.+.++.+|+..|+|+|.++++. +..++++++.+|||+|||.++.++++..+.+ .+.++++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l~ 73 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAVY 73 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEEE
Confidence 577889999999999999999999999999986 7889999999999999999999999887764 4568999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhh
Q 016375 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (390)
Q Consensus 88 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H 167 (390)
++|+++|+.|+.+.++.+. ..++++..++|+...... +...++|+|+||+++...+.... ..++++++||+||+|
T Consensus 74 l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~-~~l~~l~lvViDE~H 148 (720)
T PRK00254 74 LVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGS-SWIKDVKLVVADEIH 148 (720)
T ss_pred EeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCc-hhhhcCCEEEEcCcC
Confidence 9999999999999998864 457888889988765433 23568999999999988776543 347889999999999
Q ss_pred hhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccc-cc-cceeEEecCCCc------
Q 016375 168 RLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTV-DT-LKQQYRFVPAKY------ 239 (390)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~------ 239 (390)
.+.+...+..+..++..+....|++++|||+++. ..+.. .+.... +......... .. ..+.+.......
T Consensus 149 ~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~-~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T PRK00254 149 LIGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAEL-VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPN 225 (720)
T ss_pred ccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCcc-ccCCCCCCcceeeEecCCeeeccCcchhcchH
Confidence 8887778888888888888889999999999763 33333 222211 1000000000 00 000111111110
Q ss_pred -chhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhc---------------------------------CCceeeccC
Q 016375 240 -KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL---------------------------------GQRAIPISG 285 (390)
Q Consensus 240 -~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~~ 285 (390)
....+...+. .+.++||||++++.++.++..|.+. ...+..+|+
T Consensus 226 ~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHa 303 (720)
T PRK00254 226 SWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHA 303 (720)
T ss_pred HHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCC
Confidence 0112222222 4688999999999988777655321 124788999
Q ss_pred CCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEE-------ecCC-CCcchhhhccccccCCC--CcceEEE
Q 016375 286 HMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN-------YDIP-TNSKDYIHRVGRTARAG--RTGVAIS 355 (390)
Q Consensus 286 ~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~-------~~~~-~~~~~~~Q~~GR~~R~~--~~~~~i~ 355 (390)
++++.+|..+.+.|++|.++|||||++++.|+|+|..++||. ++.+ .+..+|.||+||+||.| ..|.+++
T Consensus 304 gl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii 383 (720)
T PRK00254 304 GLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAII 383 (720)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEE
Confidence 999999999999999999999999999999999999888874 2222 24568999999999975 5589999
Q ss_pred Eecccc
Q 016375 356 LVNQYE 361 (390)
Q Consensus 356 ~~~~~~ 361 (390)
+....+
T Consensus 384 ~~~~~~ 389 (720)
T PRK00254 384 VATTEE 389 (720)
T ss_pred EecCcc
Confidence 987654
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.8e-41 Score=314.17 Aligned_cols=335 Identities=23% Similarity=0.336 Sum_probs=265.1
Q ss_pred CCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 15 ~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
|+..+.+.++.. |.+|+|.|.++++.+.+|+++++.||||||||.++.+|++..+.+.. ......+-.+|+|+|.++|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHHH
Confidence 678888888888 88999999999999999999999999999999999999999999864 2222346789999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCC-ccCCCccEEEEehhhhhcccc
Q 016375 95 AIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLDEADRLLNDD 173 (390)
Q Consensus 95 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~-~~~~~~~~iIiDE~H~~~~~~ 173 (390)
..++...+..++...++.+.+-+|++....+.....+.++|+|+||++|.-.+...+. -.+.++.+|||||+|.+..+.
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999999999999999999999999999999999999999999999887766421 237889999999999888755
Q ss_pred cHHH----HHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCC--C-eEEecCCccccccccceeEEec-CC--------
Q 016375 174 FEKS----LDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKN--P-VKIEAASKYSTVDTLKQQYRFV-PA-------- 237 (390)
Q Consensus 174 ~~~~----~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~-~~-------- 237 (390)
-+.. +..+....+ ..|.|++|||..+..+ ..+..... + ..+....... ........ +.
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~~-varfL~g~~~~~~Iv~~~~~k~----~~i~v~~p~~~~~~~~~~~ 239 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGPPEE-VAKFLVGFGDPCEIVDVSAAKK----LEIKVISPVEDLIYDEELW 239 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCCHHH-HHHHhcCCCCceEEEEcccCCc----ceEEEEecCCccccccchh
Confidence 4433 334444444 6789999999885333 33333333 2 2222221111 11111111 00
Q ss_pred CcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcC-CceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCC
Q 016375 238 KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG-QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRG 316 (390)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G 316 (390)
......+..++++ ...++||+|++..++.++..|++.+ ..+...||.++.+.|..+.++|++|+.+++|||+.++-|
T Consensus 240 ~~~~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELG 317 (814)
T COG1201 240 AALYERIAELVKK--HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELG 317 (814)
T ss_pred HHHHHHHHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhc
Confidence 1122223333333 4489999999999999999999987 789999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCCcchhhhccccccCC-CCcceEEEEecc
Q 016375 317 LDIPSVDMVINYDIPTNSKDYIHRVGRTARA-GRTGVAISLVNQ 359 (390)
Q Consensus 317 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~-~~~~~~i~~~~~ 359 (390)
+|+.+++.||+++.|.++..+.||+||+|+. +...+.+++..+
T Consensus 318 IDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 318 IDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred cccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999999976 544555555554
No 46
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.4e-42 Score=306.58 Aligned_cols=329 Identities=23% Similarity=0.303 Sum_probs=260.0
Q ss_pred HHHHHHh-cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHH
Q 016375 19 LVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 97 (390)
Q Consensus 19 ~~~~l~~-~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 97 (390)
....|+. +|+..+|+.|.+++..+.+++++++.+|||.|||++|.+|++-. ...+|||+|..+|...
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~D 72 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMKD 72 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHHH
Confidence 3455666 79999999999999999999999999999999999999998753 3368999999999999
Q ss_pred HHHHHHHhccCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccc-
Q 016375 98 ISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND- 172 (390)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~- 172 (390)
+.+.++..+ +.+..+.+..+..+....+ ....++++.+|+.+........ +....+.+++|||||.++.+
T Consensus 73 QV~~l~~~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~-L~~~~i~l~vIDEAHCiSqWG 147 (590)
T COG0514 73 QVDQLEAAG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLEL-LKRLPISLVAIDEAHCISQWG 147 (590)
T ss_pred HHHHHHHcC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHH-HHhCCCceEEechHHHHhhcC
Confidence 999998876 6777777776655544432 3468999999998855322211 22455889999999999986
Q ss_pred -ccHHHHHHHH---HhCCCCccEEEEeecCchhHHHHHHHhc--CCCeEEecCCccccccccceeEEecCCCcchhHHHH
Q 016375 173 -DFEKSLDEIL---NVIPRMRQTYLFSATMTKKVKKLQRACL--KNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246 (390)
Q Consensus 173 -~~~~~~~~~~---~~~~~~~~~i~~saT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (390)
+|+..+..+. ..++ ..+++++|||.++.+...+...+ ..+..+......++.... ..+.......+.
T Consensus 148 hdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~-----v~~~~~~~~q~~- 220 (590)
T COG0514 148 HDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALK-----VVEKGEPSDQLA- 220 (590)
T ss_pred CccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhh-----hhhcccHHHHHH-
Confidence 4877776654 4455 45699999999998776555443 334444444333333211 122111112222
Q ss_pred HHH---hhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCC
Q 016375 247 ILT---EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD 323 (390)
Q Consensus 247 ~~~---~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~ 323 (390)
++. .......||||.+++.++.+++.|...|..+..||++++..+|..+.++|..++.+|+|||.++++|+|-|+++
T Consensus 221 fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVR 300 (590)
T COG0514 221 FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVR 300 (590)
T ss_pred HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCce
Confidence 333 55677799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHH
Q 016375 324 MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKL 371 (390)
Q Consensus 324 ~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~ 371 (390)
.|||++.|.|...|.|.+|||||.|..+.|++++++.+..+....-+.
T Consensus 301 fViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 301 FVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999999999999999999999999999999997766655433
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.3e-40 Score=325.23 Aligned_cols=331 Identities=20% Similarity=0.196 Sum_probs=252.6
Q ss_pred CCHHHHHHHHhcCCCCCchHHHhhHHhHhcC------CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEE
Q 016375 15 LRDELVEACENVGWKTPSKIQAEAIPHALEG------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL 88 (390)
Q Consensus 15 ~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~------~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil 88 (390)
.+....++..+++| ++++.|.++++.+.++ .+.+++++||+|||.+++.++...+. .+++++|+
T Consensus 586 ~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---------~g~qvlvL 655 (1147)
T PRK10689 586 DREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------NHKQVAVL 655 (1147)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---------cCCeEEEE
Confidence 34455667788999 7999999999999875 68999999999999988777665542 46789999
Q ss_pred cCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEe
Q 016375 89 SPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (390)
Q Consensus 89 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiD 164 (390)
+||++|+.|+++.+++.....++.+..+++......+...+ ...++|+|+||+.+. ..+.+.+++++|||
T Consensus 656 vPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~------~~v~~~~L~lLVID 729 (1147)
T PRK10689 656 VPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ------SDVKWKDLGLLIVD 729 (1147)
T ss_pred eCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh------CCCCHhhCCEEEEe
Confidence 99999999999999987766678888888887766554432 246899999996432 12456789999999
Q ss_pred hhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHH
Q 016375 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244 (390)
Q Consensus 165 E~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (390)
|+|++.. .....+..++...+++++||||.+....+....+.++..+....... ..+......... ....
T Consensus 730 EahrfG~-----~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~---~~~k 799 (1147)
T PRK10689 730 EEHRFGV-----RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDS---LVVR 799 (1147)
T ss_pred chhhcch-----hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCc---HHHH
Confidence 9998622 22344566777889999999999887777666666766665433221 112211111111 1111
Q ss_pred HHHHHhh-CCCceEEEecchhHHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCC
Q 016375 245 VYILTEV-SASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321 (390)
Q Consensus 245 ~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~ 321 (390)
..++.+. .+++++|||++++.++.+++.|.+. +..+..+||+|+..+|.+++++|.+|+.+|||||+++++|+|+|+
T Consensus 800 ~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~ 879 (1147)
T PRK10689 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 (1147)
T ss_pred HHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccccccc
Confidence 2222222 4678999999999999999999987 678999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCC-CCcchhhhccccccCCCCcceEEEEeccc------cHHHHHHHHHH
Q 016375 322 VDMVINYDIP-TNSKDYIHRVGRTARAGRTGVAISLVNQY------ELEWYLQIEKL 371 (390)
Q Consensus 322 ~~~vi~~~~~-~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~------~~~~~~~~~~~ 371 (390)
+++||+.+.. .+...|.|+.||+||.|+.|.|++++.+. ..+.+..+++.
T Consensus 880 v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred CCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHh
Confidence 9999976553 56778999999999999999999998653 24455555544
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=9.4e-40 Score=310.51 Aligned_cols=329 Identities=19% Similarity=0.223 Sum_probs=241.9
Q ss_pred HHHHHHHHhcCCCCCchHHHhhHHhHhcC------CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcC
Q 016375 17 DELVEACENVGWKTPSKIQAEAIPHALEG------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (390)
Q Consensus 17 ~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~------~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 90 (390)
..+......++| +|++.|.++++.+.++ .+.++.+|||||||.+++.+++..+. .+.+++|++|
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---------~g~q~lilaP 318 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---------AGYQAALMAP 318 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---------cCCeEEEEec
Confidence 334556677899 7999999999999875 37999999999999999998887763 4678999999
Q ss_pred CHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehh
Q 016375 91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (390)
Q Consensus 91 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~ 166 (390)
|++|+.|+++.++++....++++..++|+.....+... ....++|+|+|++.+.. ...+.+++++|+||+
T Consensus 319 T~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~ 392 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQ 392 (681)
T ss_pred cHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEech
Confidence 99999999999999988888999999999886544332 23469999999876633 234678999999999
Q ss_pred hhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHH
Q 016375 167 DRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246 (390)
Q Consensus 167 H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (390)
|++... ....+......+++++|||||.+....+..........+..... ....+. ............+..
T Consensus 393 Hrfg~~-----qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~--~r~~i~--~~~~~~~~~~~~~~~ 463 (681)
T PRK10917 393 HRFGVE-----QRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP--GRKPIT--TVVIPDSRRDEVYER 463 (681)
T ss_pred hhhhHH-----HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC--CCCCcE--EEEeCcccHHHHHHH
Confidence 976332 22223334445789999999987654433221112222211111 011111 112222222222222
Q ss_pred HHHh-hCCCceEEEecch--------hHHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCC
Q 016375 247 ILTE-VSASSTMVFTRTC--------DATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 315 (390)
Q Consensus 247 ~~~~-~~~~~~lvf~~~~--------~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~ 315 (390)
+... ..+.+++|||+.+ ..++.+++.|.+. +.++..+||+++..+|.++++.|++|+.+|||+|+++++
T Consensus 464 i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 543 (681)
T PRK10917 464 IREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEV 543 (681)
T ss_pred HHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceee
Confidence 2222 2577999999954 3456777777765 468999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecCCC-CcchhhhccccccCCCCcceEEEEec-c---ccHHHHHHHHH
Q 016375 316 GLDIPSVDMVINYDIPT-NSKDYIHRVGRTARAGRTGVAISLVN-Q---YELEWYLQIEK 370 (390)
Q Consensus 316 G~d~~~~~~vi~~~~~~-~~~~~~Q~~GR~~R~~~~~~~i~~~~-~---~~~~~~~~~~~ 370 (390)
|+|+|++++||+++.+. +...+.|+.||+||.|.+|.|++++. + ...+.+..+++
T Consensus 544 GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~ 603 (681)
T PRK10917 544 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE 603 (681)
T ss_pred CcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH
Confidence 99999999999999985 56789999999999999999999995 3 23344444443
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.3e-39 Score=307.77 Aligned_cols=317 Identities=19% Similarity=0.246 Sum_probs=234.2
Q ss_pred HHHHHHHHhcCCCCCchHHHhhHHhHhcC------CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcC
Q 016375 17 DELVEACENVGWKTPSKIQAEAIPHALEG------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (390)
Q Consensus 17 ~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~------~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 90 (390)
..+.+.+++++| +|++.|.++++.+.++ .+.++.+|||||||.+++++++..+. .+.+++|++|
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---------~g~qvlilaP 292 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---------AGYQVALMAP 292 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---------cCCcEEEECC
Confidence 444567788999 7999999999999864 25899999999999999888887663 4667999999
Q ss_pred CHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehh
Q 016375 91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (390)
Q Consensus 91 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~ 166 (390)
+++|+.|+++.++++....++++..++|+.....+... ...+++|+|+|+..+.. ...+.++++||+||+
T Consensus 293 T~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 293 TEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQ 366 (630)
T ss_pred HHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEech
Confidence 99999999999999988888999999999876553332 23468999999986643 234678999999999
Q ss_pred hhhcccccHHHHHHHHHhCC--CCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHH
Q 016375 167 DRLLNDDFEKSLDEILNVIP--RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244 (390)
Q Consensus 167 H~~~~~~~~~~~~~~~~~~~--~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (390)
|++.... +.. +..... ..+++++|||||.+....+..........+..... ....+ .............+
T Consensus 367 H~fg~~q-r~~---l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~--~r~~i--~~~~~~~~~~~~~~ 438 (630)
T TIGR00643 367 HRFGVEQ-RKK---LREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPP--GRKPI--TTVLIKHDEKDIVY 438 (630)
T ss_pred hhccHHH-HHH---HHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCC--CCCce--EEEEeCcchHHHHH
Confidence 9764332 222 222222 25679999999887544332211111111111110 00111 11122222222233
Q ss_pred HHHHHh-hCCCceEEEecch--------hHHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCC
Q 016375 245 VYILTE-VSASSTMVFTRTC--------DATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVA 313 (390)
Q Consensus 245 ~~~~~~-~~~~~~lvf~~~~--------~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~ 313 (390)
..+... ..+.+++|||+.. ..++.+++.|.+. +..+..+||+++..+|.++++.|++|+.+|||||+++
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 518 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVI 518 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcee
Confidence 333333 2577899999875 4466777777763 6789999999999999999999999999999999999
Q ss_pred CCCCCCCCCCEEEEecCCC-CcchhhhccccccCCCCcceEEEEe
Q 016375 314 SRGLDIPSVDMVINYDIPT-NSKDYIHRVGRTARAGRTGVAISLV 357 (390)
Q Consensus 314 ~~G~d~~~~~~vi~~~~~~-~~~~~~Q~~GR~~R~~~~~~~i~~~ 357 (390)
++|+|+|++++||+++.+. +...+.|+.||+||.|++|.|++++
T Consensus 519 e~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred ecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999999999999999885 6778999999999999999999999
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.3e-40 Score=315.46 Aligned_cols=333 Identities=18% Similarity=0.258 Sum_probs=242.7
Q ss_pred CcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEE
Q 016375 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL 88 (390)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil 88 (390)
+|+++++++++.+.++..|+. ++++|.++++.+..++++++.+|||+|||+++.++++..+.. +.+++++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v~i 71 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSIYI 71 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEEEE
Confidence 577889999999999999995 999999999999999999999999999999998888877643 4568999
Q ss_pred cCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhh
Q 016375 89 SPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR 168 (390)
Q Consensus 89 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~ 168 (390)
+|+++|+.|++++++++. ..+..+....|+...... ....++|+|+||+++...+.++. ..+.++++||+||+|.
T Consensus 72 ~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~-~~l~~v~lvViDEaH~ 146 (674)
T PRK01172 72 VPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDP-YIINDVGLIVADEIHI 146 (674)
T ss_pred echHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCCh-hHHhhcCEEEEecchh
Confidence 999999999999998764 456788778887654332 22468999999999988777654 3478899999999998
Q ss_pred hcccccHHHHHHHHH---hCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCcccccc-ccc--eeEEecCCCcchh
Q 016375 169 LLNDDFEKSLDEILN---VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVD-TLK--QQYRFVPAKYKDC 242 (390)
Q Consensus 169 ~~~~~~~~~~~~~~~---~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~ 242 (390)
+.+..++..+..++. ..+...|++++|||+++. ..+.+ .++... +.......... ... .............
T Consensus 147 l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~-~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 147 IGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASL-IKSNFRPVPLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred ccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCc-cCCCCCCCCeEEEEEecCeeeecccccccc
Confidence 877666666665544 345567899999999763 33333 222111 11000000000 000 0000000000111
Q ss_pred HHHHHHHh--hCCCceEEEecchhHHHHHHHHHHhcC-------------------------CceeeccCCCCHHHHHHH
Q 016375 243 YLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLG-------------------------QRAIPISGHMSQSKRLGA 295 (390)
Q Consensus 243 ~~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~-------------------------~~~~~~~~~~~~~~~~~~ 295 (390)
.+..++.+ ..++++||||++++.++.++..|.+.. ..+..+|++++..+|..+
T Consensus 224 ~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~v 303 (674)
T PRK01172 224 DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFI 303 (674)
T ss_pred cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHH
Confidence 12233332 257899999999999999998886531 136778999999999999
Q ss_pred HHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecC---------CCCcchhhhccccccCCCC--cceEEEEeccc
Q 016375 296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDI---------PTNSKDYIHRVGRTARAGR--TGVAISLVNQY 360 (390)
Q Consensus 296 ~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~---------~~~~~~~~Q~~GR~~R~~~--~~~~i~~~~~~ 360 (390)
.+.|++|.++|||||++++.|+|+|.. .||+.+. +.+..+|.|++||+||.|. .|.+++++...
T Consensus 304 e~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 304 EEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 999999999999999999999999875 5555443 3577789999999999985 46677776543
No 51
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-40 Score=289.08 Aligned_cols=358 Identities=32% Similarity=0.472 Sum_probs=300.4
Q ss_pred CCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 15 ~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
+...+..++...||..|.|.|.++++-+..+++++.++|||+|||+++++|++..+...... ....|.+++|+.|+++|
T Consensus 143 ~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~-~~~~gl~a~Il~ptreL 221 (593)
T KOG0344|consen 143 MNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQE-KHKVGLRALILSPTREL 221 (593)
T ss_pred hcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcc-cCccceEEEEecchHHH
Confidence 56777888899999999999999999999999999999999999999999999998876642 22357899999999999
Q ss_pred HHHHHHHHHHhc--cCCCceEEEEecCCchH-HHHHhcCCCCCEEEeCCchhHHHhhcCC-CccCCCccEEEEehhhhhc
Q 016375 95 AIQISEQFEALG--SGISLRCAVLVGGVDMM-QQTLALGKRPHIVVATPGRLMDHLTNTK-GFSLGTLKYLVLDEADRLL 170 (390)
Q Consensus 95 ~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~t~~~l~~~~~~~~-~~~~~~~~~iIiDE~H~~~ 170 (390)
+.|.+.++.++. ...+.....+....... +........++++++||..+...+...+ ..+++.+..+|+||++.+.
T Consensus 222 a~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lf 301 (593)
T KOG0344|consen 222 AAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLF 301 (593)
T ss_pred HHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhh
Confidence 999999999988 44455544433332221 1222223468999999999888776542 3568889999999999988
Q ss_pred cc-ccHHHHHHHHHhCCC-CccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEec-CCCcchhHHHHH
Q 016375 171 ND-DFEKSLDEILNVIPR-MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFV-PAKYKDCYLVYI 247 (390)
Q Consensus 171 ~~-~~~~~~~~~~~~~~~-~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 247 (390)
.. .|..++..++..+.+ ...+-++|||.+..+++.++........+...........+.+...++ ....+...+..+
T Consensus 302 e~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~ 381 (593)
T KOG0344|consen 302 EPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQL 381 (593)
T ss_pred ChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHH
Confidence 87 788888888776544 345677899999999999999988888777777766666666665554 456777778888
Q ss_pred HHhhCCCceEEEecchhHHHHHHHHH-HhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEE
Q 016375 248 LTEVSASSTMVFTRTCDATRLLALML-RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI 326 (390)
Q Consensus 248 ~~~~~~~~~lvf~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi 326 (390)
+...-..+++||+.+.+.+.++.+.| .-.++++.++||..+..+|++.+++|+.|++.+|+||+.+++|+|+.+++.||
T Consensus 382 v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI 461 (593)
T KOG0344|consen 382 VASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI 461 (593)
T ss_pred HhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE
Confidence 88888899999999999999999999 66789999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhC
Q 016375 327 NYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIG 373 (390)
Q Consensus 327 ~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~ 373 (390)
.||.|.+...|+.|+||.||.|+.|.+++||.+.+...+..+.....
T Consensus 462 nyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 462 NYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred ecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 99999999999999999999999999999999999888777765543
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=9.9e-39 Score=298.89 Aligned_cols=326 Identities=21% Similarity=0.224 Sum_probs=237.1
Q ss_pred HHHHHHHHh-cCCCCCchHHHhhHHhHhcCC-CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 17 DELVEACEN-VGWKTPSKIQAEAIPHALEGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 17 ~~~~~~l~~-~g~~~~~~~Q~~~~~~i~~~~-~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
+++.+++++ .||. |+|+|.++++.+..|+ ..++.+|||||||.++.++++.. .. ......++++++|+++|
T Consensus 2 ~~f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReL 74 (844)
T TIGR02621 2 LKFDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTV 74 (844)
T ss_pred chHHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHH
Confidence 456666665 6996 9999999999999998 57888999999998654444421 11 11123345567899999
Q ss_pred HHHHHHHHHHhccCC-----------------------CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhh-cC
Q 016375 95 AIQISEQFEALGSGI-----------------------SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLT-NT 150 (390)
Q Consensus 95 ~~q~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~-~~ 150 (390)
+.|.++.+.+++... ++++..+.|+.....++......++|+|+|++.+.+... +.
T Consensus 75 a~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~g 154 (844)
T TIGR02621 75 VDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSG 154 (844)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccc
Confidence 999999998887643 488899999999999999998999999999766543221 10
Q ss_pred CC-------c---cCCCccEEEEehhhhhcccccHHHHHHHHHhC--CCC---ccEEEEeecCchhHHHHHHHhcCCCeE
Q 016375 151 KG-------F---SLGTLKYLVLDEADRLLNDDFEKSLDEILNVI--PRM---RQTYLFSATMTKKVKKLQRACLKNPVK 215 (390)
Q Consensus 151 ~~-------~---~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~--~~~---~~~i~~saT~~~~~~~~~~~~~~~~~~ 215 (390)
.. + .+.+..++|+|||| ....|...+..+...+ +.. .|+++||||++.........+..++..
T Consensus 155 Yg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~ 232 (844)
T TIGR02621 155 YGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYK 232 (844)
T ss_pred cccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCce
Confidence 00 0 15678999999999 5677899999999864 332 589999999998777776666655554
Q ss_pred EecCCccccccccceeEEecCCCcchhHHHHH---HHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHH
Q 016375 216 IEAASKYSTVDTLKQQYRFVPAKYKDCYLVYI---LTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKR 292 (390)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 292 (390)
+...........+.+ +...+...+....... +....+.++||||++++.++.+++.|.+.+. ..+||.+++.+|
T Consensus 233 i~V~~~~l~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR 309 (844)
T TIGR02621 233 HPVLKKRLAAKKIVK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAER 309 (844)
T ss_pred eecccccccccceEE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHH
Confidence 443322222222222 2222222222222211 1223567899999999999999999998776 899999999999
Q ss_pred H-----HHHHHhcc----CC-------ccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcc-eEEE
Q 016375 293 L-----GALNKFKA----GE-------CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTG-VAIS 355 (390)
Q Consensus 293 ~-----~~~~~f~~----~~-------~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~-~~i~ 355 (390)
. .+++.|++ |. ..|||+|+++++|+|++. ++||....| ...|+||+||++|.|+.+ ..++
T Consensus 310 ~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~ 386 (844)
T TIGR02621 310 DDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIA 386 (844)
T ss_pred hhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEE
Confidence 9 77889986 43 679999999999999975 888876655 578999999999998753 3344
Q ss_pred Ee
Q 016375 356 LV 357 (390)
Q Consensus 356 ~~ 357 (390)
++
T Consensus 387 vv 388 (844)
T TIGR02621 387 VV 388 (844)
T ss_pred EE
Confidence 44
No 53
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.6e-39 Score=296.67 Aligned_cols=307 Identities=15% Similarity=0.183 Sum_probs=216.8
Q ss_pred CCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccC
Q 016375 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 108 (390)
..|+++|.++++.+.++++.++.+|||+|||.++.. +...+... ...++||++|+++|+.||.+.+++++..
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~-------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN-------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc-------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 479999999999999999999999999999987543 22222221 2337999999999999999999998653
Q ss_pred CCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCC
Q 016375 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188 (390)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~ 188 (390)
....+..+.++.... ...+|+|+|++++.+.... .+.++++||+||||++.... +..++..+++.
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~----~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~ 249 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPKE----WFDQFGMVIVDECHLFTGKS----LTSIITKLDNC 249 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchhh----hccccCEEEEEchhcccchh----HHHHHHhhhcc
Confidence 333443444443321 3478999999998764321 35789999999999887654 44555566666
Q ss_pred ccEEEEeecCchhHHHHH--HHhcCCCeEEecCCc-------------------cccc--ccc-----ceeE-EecCCCc
Q 016375 189 RQTYLFSATMTKKVKKLQ--RACLKNPVKIEAASK-------------------YSTV--DTL-----KQQY-RFVPAKY 239 (390)
Q Consensus 189 ~~~i~~saT~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~--~~~-----~~~~-~~~~~~~ 239 (390)
++++++||||........ ...++. ........ .... ... ...+ .......
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTK 328 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHH
Confidence 789999999965322111 112221 11111000 0000 000 0000 0011111
Q ss_pred chhHHHHHHHh--hCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEe-CCCCCC
Q 016375 240 KDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICT-DVASRG 316 (390)
Q Consensus 240 ~~~~~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t-~~~~~G 316 (390)
+...+..+... ..+.+++|||.+.++++.+++.|++.+.++..+||+++..+|..+++.|++|+..+||+| +.+++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 22222223222 246789999999999999999999999999999999999999999999999999999998 899999
Q ss_pred CCCCCCCEEEEecCCCCcchhhhccccccCCCCcc---eEEEEecc
Q 016375 317 LDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTG---VAISLVNQ 359 (390)
Q Consensus 317 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~---~~i~~~~~ 359 (390)
+|+|++++||++.++.|...|.|++||++|.+..+ .++-|+++
T Consensus 409 ~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~ 454 (501)
T PHA02558 409 ISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDD 454 (501)
T ss_pred cccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecc
Confidence 99999999999999999999999999999986543 44555554
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.8e-37 Score=306.60 Aligned_cols=328 Identities=20% Similarity=0.234 Sum_probs=232.0
Q ss_pred EEcCCCCchhHHhHHHHHHHHHHHHhc----CCCCCCceEEEEcCCHHHHHHHHHHHHH----h-------c-cCCCceE
Q 016375 50 GLAQTGSGKTGAFALPILQALLEIAEN----QRTVPAFFACVLSPTRELAIQISEQFEA----L-------G-SGISLRC 113 (390)
Q Consensus 50 i~~~tG~GKT~~~~~~~~~~~~~~~~~----~~~~~~~~~lil~P~~~l~~q~~~~~~~----~-------~-~~~~~~~ 113 (390)
|.+|||||||+++.+|++..+...... .....+.++|||+|+++|+.|..+.++. + + ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 479999999999999999988764211 1112457899999999999999998864 1 1 1246889
Q ss_pred EEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccH----HHHHHHHHhCCCCc
Q 016375 114 AVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE----KSLDEILNVIPRMR 189 (390)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~----~~~~~~~~~~~~~~ 189 (390)
...+|+.....+.....+.++|+|+||++|...+.+.....++++++|||||+|.+.....+ ..+..+...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999999988877777789999999999988776543345889999999999988865433 34555555666778
Q ss_pred cEEEEeecCchhHHHHHHHhcC-CCeEEecCCccccccccceeEEecCCCc---------------------chhHHHHH
Q 016375 190 QTYLFSATMTKKVKKLQRACLK-NPVKIEAASKYSTVDTLKQQYRFVPAKY---------------------KDCYLVYI 247 (390)
Q Consensus 190 ~~i~~saT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~ 247 (390)
|+|++|||..+. +.+.+.... .+..+......... .+. ......... .......+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~~~~~r~~-~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVNPPAMRHP-QIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEECCCCCccc-ceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999874 444443322 23333222111111 111 111111000 00111122
Q ss_pred HHh-hCCCceEEEecchhHHHHHHHHHHhcC---------------------------------CceeeccCCCCHHHHH
Q 016375 248 LTE-VSASSTMVFTRTCDATRLLALMLRNLG---------------------------------QRAIPISGHMSQSKRL 293 (390)
Q Consensus 248 ~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~~~~ 293 (390)
+.. ..+.++|||||+++.++.++..|++.. ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 222 246789999999999999999987642 1156789999999999
Q ss_pred HHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCC-CcceEEEEecccc--HHHHHHHHH
Q 016375 294 GALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG-RTGVAISLVNQYE--LEWYLQIEK 370 (390)
Q Consensus 294 ~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~-~~~~~i~~~~~~~--~~~~~~~~~ 370 (390)
.+.+.|++|++++||||+.++.|+|++.+++||+++.|.+..+|+||+||+||.. ..+.++++..+.. .+....++.
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~~ve~ 397 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVEC 397 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999973 2234443333211 122234566
Q ss_pred HhCCcceeec
Q 016375 371 LIGMLYILFS 380 (390)
Q Consensus 371 ~~~~~~~~~~ 380 (390)
.+...++.+.
T Consensus 398 ~l~g~iE~~~ 407 (1490)
T PRK09751 398 MFAGRLENLT 407 (1490)
T ss_pred HhcCCCCccC
Confidence 6666666543
No 55
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=8.5e-37 Score=300.77 Aligned_cols=291 Identities=21% Similarity=0.282 Sum_probs=216.8
Q ss_pred HHHHHHHh-cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHH
Q 016375 18 ELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (390)
Q Consensus 18 ~~~~~l~~-~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 96 (390)
++.+.++. +|+ .|+++|..+++.++.++++++.+|||+|||.. .+++...+.. .+.+++|++||++|+.
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f-~l~~~~~l~~--------~g~~alIL~PTreLa~ 137 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTF-GLVMSLYLAK--------KGKKSYIIFPTRLLVE 137 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHH-HHHHHHHHHh--------cCCeEEEEeccHHHHH
Confidence 33445544 588 89999999999999999999999999999964 3444433322 4678999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEecCCch-----HHHHHhc-CCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhc
Q 016375 97 QISEQFEALGSGISLRCAVLVGGVDM-----MQQTLAL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 170 (390)
Q Consensus 97 q~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~ 170 (390)
|+.+.++.++...+..+..+.++... ....... ...++|+|+||+.|.+.+.. +....++++|+||||++.
T Consensus 138 Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 138 QVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE---LPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh---ccccccCEEEEEChHHhh
Confidence 99999999988777777777666432 1112222 24689999999999887662 445669999999999988
Q ss_pred c-----------cccH-HHHHHHHHhCCC------------------------CccEEEEeecCchh-HHHHHHHhcCCC
Q 016375 171 N-----------DDFE-KSLDEILNVIPR------------------------MRQTYLFSATMTKK-VKKLQRACLKNP 213 (390)
Q Consensus 171 ~-----------~~~~-~~~~~~~~~~~~------------------------~~~~i~~saT~~~~-~~~~~~~~~~~~ 213 (390)
. .+|. +.+..++..++. ..|++++|||.++. ... ..+...
T Consensus 215 ~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~l 291 (1176)
T PRK09401 215 KSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFREL 291 (1176)
T ss_pred hcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhcc
Confidence 5 3453 455555555543 57899999999874 322 122233
Q ss_pred eEEecCCccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhH---HHHHHHHHHhcCCceeeccCCCCHH
Q 016375 214 VKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDA---TRLLALMLRNLGQRAIPISGHMSQS 290 (390)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~ 290 (390)
..+..........++.+.+...+ .+...+..++... +.++||||++... ++.+++.|...|+++..+||++
T Consensus 292 l~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l--- 365 (1176)
T PRK09401 292 LGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF--- 365 (1176)
T ss_pred ceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH---
Confidence 33333333334445555555443 4555666666654 4689999999777 9999999999999999999998
Q ss_pred HHHHHHHHhccCCccEEEE----eCCCCCCCCCCC-CCEEEEecCCC
Q 016375 291 KRLGALNKFKAGECNILIC----TDVASRGLDIPS-VDMVINYDIPT 332 (390)
Q Consensus 291 ~~~~~~~~f~~~~~~ilv~----t~~~~~G~d~~~-~~~vi~~~~~~ 332 (390)
...+++|++|+++|||+ |+.+++|+|+|+ ++.||+++.|.
T Consensus 366 --~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 366 --ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred --HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 23459999999999999 588999999999 89999999885
No 56
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.9e-38 Score=290.33 Aligned_cols=311 Identities=17% Similarity=0.182 Sum_probs=216.3
Q ss_pred CCchHHHhhHHhHhc-C--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 30 TPSKIQAEAIPHALE-G--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~-~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
.+||||.+++..+.. + ++.++++|||+|||++++.++.. .++++||+||+..|+.||.+++.+|.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~------------l~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT------------VKKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH------------hCCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 589999999999874 3 47899999999999987654432 23569999999999999999999986
Q ss_pred cCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcC-------CCccCCCccEEEEehhhhhcccccHHHHH
Q 016375 107 SGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT-------KGFSLGTLKYLVLDEADRLLNDDFEKSLD 179 (390)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~-------~~~~~~~~~~iIiDE~H~~~~~~~~~~~~ 179 (390)
......+..+.|+.... ......|+|+|++++.+...+. ..+....+++||+||+|++.+..+ .
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~f----r 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMF----R 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHH----H
Confidence 54445666666654321 1234789999999886432221 112235689999999998865444 3
Q ss_pred HHHHhCCCCccEEEEeecCchhHHHH--HHHhcCCCeEEecCCccc----cccccceeEE--------------------
Q 016375 180 EILNVIPRMRQTYLFSATMTKKVKKL--QRACLKNPVKIEAASKYS----TVDTLKQQYR-------------------- 233 (390)
Q Consensus 180 ~~~~~~~~~~~~i~~saT~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-------------------- 233 (390)
.++..+... ..+++||||...-... ...++ .|..+....... ..........
T Consensus 394 ~il~~l~a~-~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQAH-CKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcCcC-cEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 444444443 4899999997532221 11111 222222111000 0000000000
Q ss_pred ---ecCCCcchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccC-CccEE
Q 016375 234 ---FVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG-ECNIL 307 (390)
Q Consensus 234 ---~~~~~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~il 307 (390)
...+..+...+..++..+ .+.++||||.+...+..+++.|. +..++|.++..+|..+++.|++| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 011223333444455543 78899999999999888888762 45689999999999999999875 88999
Q ss_pred EEeCCCCCCCCCCCCCEEEEecCC-CCcchhhhccccccCCCCcce-------EEEEeccccHHHHHHH
Q 016375 308 ICTDVASRGLDIPSVDMVINYDIP-TNSKDYIHRVGRTARAGRTGV-------AISLVNQYELEWYLQI 368 (390)
Q Consensus 308 v~t~~~~~G~d~~~~~~vi~~~~~-~~~~~~~Q~~GR~~R~~~~~~-------~i~~~~~~~~~~~~~~ 368 (390)
|+|.++.+|+|+|++++||+++.+ .|...|.||+||++|.++++. .+.+++.++.+....-
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHH
Confidence 999999999999999999999987 599999999999999975544 4889988887765533
No 57
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.3e-38 Score=272.72 Aligned_cols=339 Identities=23% Similarity=0.248 Sum_probs=264.6
Q ss_pred CcccCCCCHHHHHHHHhcCCCCCchHHHhhHHh-HhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEE
Q 016375 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPH-ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (390)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~-i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 87 (390)
..+.+++++.+.+.|++.|+.++.|.|.-++.+ +++|.+.++.++|+||||+..-++-+..++. .+++.|+
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~Kmlf 266 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGKKMLF 266 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCCeEEE
Confidence 457889999999999999999999999999966 7789999999999999999999888888887 5778999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHH----HhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEE
Q 016375 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT----LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (390)
Q Consensus 88 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIi 163 (390)
++|..+|++|-+++|+.-...+++.+..-.|........ ......+||+|+|++.+-..+...+ ++.+++.|||
T Consensus 267 LvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~--~lgdiGtVVI 344 (830)
T COG1202 267 LVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGK--DLGDIGTVVI 344 (830)
T ss_pred EehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCC--cccccceEEe
Confidence 999999999999999887677778877666654433322 2234479999999999988888764 6889999999
Q ss_pred ehhhhhcccccHHHHHHHH---HhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecC-CCc
Q 016375 164 DEADRLLNDDFEKSLDEIL---NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKY 239 (390)
Q Consensus 164 DE~H~~~~~~~~~~~~~~~---~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 239 (390)
||+|.+-+..-+..+.-+. ..+-+..|+|++|||..+..+ +++.+--..+.+... +..+.....+.. ...
T Consensus 345 DEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~e-lA~~l~a~lV~y~~R-----PVplErHlvf~~~e~e 418 (830)
T COG1202 345 DEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEE-LAKKLGAKLVLYDER-----PVPLERHLVFARNESE 418 (830)
T ss_pred eeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHH-HHHHhCCeeEeecCC-----CCChhHeeeeecCchH
Confidence 9999776644444444333 333446789999999877544 444443333333221 122344455555 344
Q ss_pred chhHHHHHHHhh--------CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC
Q 016375 240 KDCYLVYILTEV--------SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311 (390)
Q Consensus 240 ~~~~~~~~~~~~--------~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~ 311 (390)
+......+.+.. -.+++|||++|++.+.+++..|...|+++..||++++-.+|..+...|.++++.++|+|.
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 444555554422 257899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCEEEEecC----C-CCcchhhhccccccCCC--CcceEEEEeccccHHH
Q 016375 312 VASRGLDIPSVDMVINYDI----P-TNSKDYIHRVGRTARAG--RTGVAISLVNQYELEW 364 (390)
Q Consensus 312 ~~~~G~d~~~~~~vi~~~~----~-~~~~~~~Q~~GR~~R~~--~~~~~i~~~~~~~~~~ 364 (390)
+++.|+|+|. +.||+-.. . .++.+|.|+.||+||.+ ..|+|++++.+.....
T Consensus 499 AL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~ 557 (830)
T COG1202 499 ALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYH 557 (830)
T ss_pred hhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhc
Confidence 9999999964 55654332 2 48889999999999985 6699999998755433
No 58
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=280.32 Aligned_cols=320 Identities=26% Similarity=0.281 Sum_probs=226.6
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCC
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 109 (390)
.+|+||.+++...+ +++++|++|||+|||++++..+++.+... +..++++++|++.|+.|+...+..++..
T Consensus 62 ~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~-------p~~KiVF~aP~~pLv~QQ~a~~~~~~~~- 132 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR-------PKGKVVFLAPTRPLVNQQIACFSIYLIP- 132 (746)
T ss_pred cccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC-------CcceEEEeeCCchHHHHHHHHHhhccCc-
Confidence 58999999999988 99999999999999999887777666443 5678999999999999999777777654
Q ss_pred CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccH-HHHHHHHHhCCCC
Q 016375 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE-KSLDEILNVIPRM 188 (390)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~-~~~~~~~~~~~~~ 188 (390)
..+....++..........-...+|+|+||+.+.+.+.+...-.++.|.++||||||+...+... ..++..+......
T Consensus 133 -~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 133 -YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred -ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhcc
Confidence 55555666644433333444568999999999999998876444788999999999998885544 4444555554445
Q ss_pred ccEEEEeecCchhHHHHHHHhcCCCeEEecCCc-----------------------------------------------
Q 016375 189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASK----------------------------------------------- 221 (390)
Q Consensus 189 ~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 221 (390)
.|++++||||..+.+....-..+-...+.....
T Consensus 212 ~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 212 NQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred ccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 599999999876433322211110000000000
Q ss_pred ------------------cccccccceeEE----------------------ecC-------------------------
Q 016375 222 ------------------YSTVDTLKQQYR----------------------FVP------------------------- 236 (390)
Q Consensus 222 ------------------~~~~~~~~~~~~----------------------~~~------------------------- 236 (390)
....++..+.-. +.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~ 371 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR 371 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch
Confidence 000000000000 000
Q ss_pred ---------------------CCcchhHHHHHHH----hhCCCceEEEecchhHHHHHHHHHHhc---CCceeecc----
Q 016375 237 ---------------------AKYKDCYLVYILT----EVSASSTMVFTRTCDATRLLALMLRNL---GQRAIPIS---- 284 (390)
Q Consensus 237 ---------------------~~~~~~~~~~~~~----~~~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~---- 284 (390)
...+...+..++. ..++.++|||+..+..|..+...|... +++..++-
T Consensus 372 ~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~ 451 (746)
T KOG0354|consen 372 LIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGK 451 (746)
T ss_pred hhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccc
Confidence 1122222222222 225678999999999999999999842 23322222
Q ss_pred ----CCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccc
Q 016375 285 ----GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY 360 (390)
Q Consensus 285 ----~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~ 360 (390)
.+|++.++.++++.|++|++++||||+++++|+|++.|+.||.||...++..++||.|| ||. ++|+|+.+++..
T Consensus 452 s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~ 529 (746)
T KOG0354|consen 452 STQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGS 529 (746)
T ss_pred cccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcch
Confidence 46889999999999999999999999999999999999999999999999999999999 897 568888888743
Q ss_pred c
Q 016375 361 E 361 (390)
Q Consensus 361 ~ 361 (390)
+
T Consensus 530 ~ 530 (746)
T KOG0354|consen 530 E 530 (746)
T ss_pred h
Confidence 3
No 59
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.7e-35 Score=289.23 Aligned_cols=322 Identities=27% Similarity=0.316 Sum_probs=234.8
Q ss_pred CCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccC
Q 016375 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 108 (390)
.++|+||.+++..+..+ ++++++|||+|||.++++++...+.. ++.++||++|+++|+.||.+.++.+...
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 37899999999988876 89999999999999888777766532 5678999999999999999999987654
Q ss_pred CCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCC
Q 016375 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188 (390)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~ 188 (390)
.+..+..++|+.....+...+ ..++|+|+|++.+.+.+... .+.+.++++||+||||++........+..........
T Consensus 85 ~~~~v~~~~g~~~~~~r~~~~-~~~~iiv~T~~~l~~~l~~~-~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKRAELW-EKAKVIVATPQVIENDLIAG-RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred CCceEEEEeCCCCHHHHHHHH-hCCCEEEECHHHHHHHHHcC-CCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 445777788887766544333 35799999999998877654 3567889999999999887654433444444444455
Q ss_pred ccEEEEeecCchhHHHHH---HHhcCCCeEEecCC----------------------c----------------------
Q 016375 189 RQTYLFSATMTKKVKKLQ---RACLKNPVKIEAAS----------------------K---------------------- 221 (390)
Q Consensus 189 ~~~i~~saT~~~~~~~~~---~~~~~~~~~~~~~~----------------------~---------------------- 221 (390)
++++++||||......+. .........+.... .
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 679999999854332211 11100000000000 0
Q ss_pred --c---c---cccc-------ccee-------------------------------------------------------
Q 016375 222 --Y---S---TVDT-------LKQQ------------------------------------------------------- 231 (390)
Q Consensus 222 --~---~---~~~~-------~~~~------------------------------------------------------- 231 (390)
. . .... +...
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 0 0 0000 0000
Q ss_pred -----------------EEecCCCcchhHHHHHHHh----hCCCceEEEecchhHHHHHHHHHHhcCCceeeccCC----
Q 016375 232 -----------------YRFVPAKYKDCYLVYILTE----VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGH---- 286 (390)
Q Consensus 232 -----------------~~~~~~~~~~~~~~~~~~~----~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~---- 286 (390)
........+...+..++.+ ..+.++||||++.+.++.+.+.|...++++..++|.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~ 402 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKD 402 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 0000112233334444433 467899999999999999999999989988888875
Q ss_pred ----CCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccH
Q 016375 287 ----MSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (390)
Q Consensus 287 ----~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~ 362 (390)
++..+|..+++.|++|+.++||+|+++++|+|+|++++||+|++++++..++||+||+||.+. +.++.++..+..
T Consensus 403 ~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~ 481 (773)
T PRK13766 403 GDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTR 481 (773)
T ss_pred ccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCCh
Confidence 888899999999999999999999999999999999999999999999999999999999865 778888875443
No 60
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.4e-36 Score=288.04 Aligned_cols=360 Identities=24% Similarity=0.288 Sum_probs=270.5
Q ss_pred HHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHH
Q 016375 17 DELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (390)
Q Consensus 17 ~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 96 (390)
..+...+...|...|+.||.+++..+.+|++++|..|||||||.+|++|+++.+++.. ..++|++.|+++|++
T Consensus 57 ~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~-------~a~AL~lYPtnALa~ 129 (851)
T COG1205 57 ESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP-------SARALLLYPTNALAN 129 (851)
T ss_pred hHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc-------CccEEEEechhhhHh
Confidence 3345667778888899999999999999999999999999999999999999998863 347999999999999
Q ss_pred HHHHHHHHhccCCC--ceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCC-C--ccCCCccEEEEehhhhhcc
Q 016375 97 QISEQFEALGSGIS--LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTK-G--FSLGTLKYLVLDEADRLLN 171 (390)
Q Consensus 97 q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~-~--~~~~~~~~iIiDE~H~~~~ 171 (390)
++.+++.++....+ +....++|+...........+.++|+++||+++...+.+.. . +.++++++||+||+|.+-.
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 99999999988776 88889999999988877888899999999999977444332 1 2357799999999996544
Q ss_pred ---cccH---HHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecC---------
Q 016375 172 ---DDFE---KSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP--------- 236 (390)
Q Consensus 172 ---~~~~---~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 236 (390)
+... +.+..++...++..|+++.|||..+..+. ...+++...... ..+..............+
T Consensus 210 v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~-~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 210 VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEF-AEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred cchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHH-HHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhhhhc
Confidence 2222 33334445556678999999998876654 444444443332 222222222333333333
Q ss_pred CCcchhHHHHHHHh--hCCCceEEEecchhHHHHHH----HHHHhcC----CceeeccCCCCHHHHHHHHHHhccCCccE
Q 016375 237 AKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLA----LMLRNLG----QRAIPISGHMSQSKRLGALNKFKAGECNI 306 (390)
Q Consensus 237 ~~~~~~~~~~~~~~--~~~~~~lvf~~~~~~~~~l~----~~l~~~~----~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 306 (390)
.......+..+... ..+.++|+|+.+...++.+. ..+...+ ..+..+++++...+|..+...|++|+..+
T Consensus 288 r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~ 367 (851)
T COG1205 288 RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367 (851)
T ss_pred ccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccE
Confidence 11223333333332 26889999999999999986 4444444 45788999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCEEEEecCCC-CcchhhhccccccCCCCcceEEEEeccccH--HHHHHHHHHhC---Ccceeec
Q 016375 307 LICTDVASRGLDIPSVDMVINYDIPT-NSKDYIHRVGRTARAGRTGVAISLVNQYEL--EWYLQIEKLIG---MLYILFS 380 (390)
Q Consensus 307 lv~t~~~~~G~d~~~~~~vi~~~~~~-~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~--~~~~~~~~~~~---~~~~~~~ 380 (390)
+++|+++..|+|+.+++.||..+.|. +..++.|+.||+||.++.+.++..+..+.. .....-+.... ...+...
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~~~~~~~e~~~ 447 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLETGFGPVESVR 447 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhhcccCcccccc
Confidence 99999999999999999999999999 899999999999999977777766664333 33333344444 4555555
Q ss_pred ccccc
Q 016375 381 IEATR 385 (390)
Q Consensus 381 ~~~~~ 385 (390)
++..+
T Consensus 448 ~~~~n 452 (851)
T COG1205 448 VDDNN 452 (851)
T ss_pred cCCCC
Confidence 54443
No 61
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5.8e-36 Score=278.81 Aligned_cols=317 Identities=16% Similarity=0.124 Sum_probs=222.8
Q ss_pred chHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHH---------HHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHH
Q 016375 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI---------LQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (390)
Q Consensus 32 ~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~---------~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 102 (390)
...|.++++.+.+++++++.|+||+|||.+....+ +..+.+- .....+.++++++|+++|+.|+...+
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~---~~~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI---DPNFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc---ccccCCcEEEEECcHHHHHHHHHHHH
Confidence 45788999999999999999999999997632222 2222110 01224568999999999999999998
Q ss_pred HHhccC---CCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHH
Q 016375 103 EALGSG---ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD 179 (390)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~ 179 (390)
.+.... .+..+....|+..... ........+++++|+.... ..+..+++||+||+|+..... +.+.
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~~~-~~t~~k~~~Ilv~T~~L~l--------~~L~~v~~VVIDEaHEr~~~~--DllL 311 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPDEL-INTNPKPYGLVFSTHKLTL--------NKLFDYGTVIIDEVHEHDQIG--DIII 311 (675)
T ss_pred HHHhCccccCCceEEEEECCcchHH-hhcccCCCCEEEEeCcccc--------cccccCCEEEccccccCccch--hHHH
Confidence 764432 2456677788876321 1222235789999965211 136779999999999876643 4555
Q ss_pred HHHHhC-CCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCC---------CcchhHHHHHHH
Q 016375 180 EILNVI-PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA---------KYKDCYLVYILT 249 (390)
Q Consensus 180 ~~~~~~-~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 249 (390)
.++... +..+|+++||||++.+.+.+ ..+++++..+..... ....+.+.+..... ......+...+.
T Consensus 312 ~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 312 AVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 555443 33458999999998877766 466766666655432 11222222221110 011112222332
Q ss_pred h---hCCCceEEEecchhHHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHh-ccCCccEEEEeCCCCCCCCCCCCC
Q 016375 250 E---VSASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKF-KAGECNILICTDVASRGLDIPSVD 323 (390)
Q Consensus 250 ~---~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~ilv~t~~~~~G~d~~~~~ 323 (390)
. ..++.+|||++++.+++.+++.|.+. +..+..+||.+++. ++.+++| ++|+.+|||||+.+++|+|+|+++
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 2 23568999999999999999999987 68899999999875 4666777 689999999999999999999999
Q ss_pred EEEEec---CCC---------CcchhhhccccccCCCCcceEEEEeccccHHHHHHH
Q 016375 324 MVINYD---IPT---------NSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (390)
Q Consensus 324 ~vi~~~---~~~---------~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~ 368 (390)
+||.++ .|. |..++.||.||+||. ++|.|+.++++.+...+..+
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHH
Confidence 999998 343 667899999999999 78999999998776444333
No 62
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.2e-35 Score=296.77 Aligned_cols=328 Identities=20% Similarity=0.207 Sum_probs=242.8
Q ss_pred HHHHHHHHh-cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHH
Q 016375 17 DELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELA 95 (390)
Q Consensus 17 ~~~~~~l~~-~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 95 (390)
+++.+.+++ +|+ +|++.|.++++.+++++++++.+|||+|||..++.+++... . .+.++||++|+++|+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-~--------~g~~aLVl~PTreLa 135 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-L--------KGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-h--------cCCeEEEEECHHHHH
Confidence 445567776 899 79999999999999999999999999999985544433221 1 466899999999999
Q ss_pred HHHHHHHHHhccCC--CceEEEEecCCchHHHHHh---c-CCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhh
Q 016375 96 IQISEQFEALGSGI--SLRCAVLVGGVDMMQQTLA---L-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL 169 (390)
Q Consensus 96 ~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~-~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~ 169 (390)
.|+.+.++.++... ++.+..++|+.....+... . .+.++|+|+||+.+.+.+.... ..+++++|+||||.+
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~---~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK---HLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh---hCCCCEEEEECceec
Confidence 99999999987654 4666778888876654322 2 3458999999998887655421 266899999999988
Q ss_pred cc-----------cccHHHHHH----HHH----------------------hCCCCcc-EEEEeecCchhHHHHHHHhcC
Q 016375 170 LN-----------DDFEKSLDE----ILN----------------------VIPRMRQ-TYLFSATMTKKVKKLQRACLK 211 (390)
Q Consensus 170 ~~-----------~~~~~~~~~----~~~----------------------~~~~~~~-~i~~saT~~~~~~~~~~~~~~ 211 (390)
+. .+|...+.. ++. .+++.++ .+.+|||.++.... . ..+.
T Consensus 213 l~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~-~-~l~~ 290 (1638)
T PRK14701 213 LKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDR-V-KLYR 290 (1638)
T ss_pred cccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHH-H-HHhh
Confidence 75 255555543 221 2344455 56789999874222 2 2334
Q ss_pred CCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhH---HHHHHHHHHhcCCceeeccCCCC
Q 016375 212 NPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDA---TRLLALMLRNLGQRAIPISGHMS 288 (390)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~ 288 (390)
.+..+..........++.+.+.......+ ..+..++... +..+||||+++.. ++.+++.|.+.|+++..+|++
T Consensus 291 ~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 291 ELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred cCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 55556555555555666666655443333 4566666654 5789999999775 589999999999999999985
Q ss_pred HHHHHHHHHHhccCCccEEEEeC----CCCCCCCCCC-CCEEEEecCCC---Ccchhhhcc-------------ccccCC
Q 016375 289 QSKRLGALNKFKAGECNILICTD----VASRGLDIPS-VDMVINYDIPT---NSKDYIHRV-------------GRTARA 347 (390)
Q Consensus 289 ~~~~~~~~~~f~~~~~~ilv~t~----~~~~G~d~~~-~~~vi~~~~~~---~~~~~~Q~~-------------GR~~R~ 347 (390)
|...++.|++|+++|||||. .+.+|+|+|+ ++.||+++.|. +...|.|.. ||++|.
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 88999999999999999994 7889999998 99999999998 777666655 999999
Q ss_pred CCcceEEEEeccccHHHHH
Q 016375 348 GRTGVAISLVNQYELEWYL 366 (390)
Q Consensus 348 ~~~~~~i~~~~~~~~~~~~ 366 (390)
|..+.++..+...+...+.
T Consensus 444 g~~~~~~~~~~~~~~~~~~ 462 (1638)
T PRK14701 444 GIPIEGVLDVFPEDVEFLR 462 (1638)
T ss_pred CCcchhHHHhHHHHHHHHH
Confidence 8877776444444444433
No 63
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.8e-35 Score=278.06 Aligned_cols=308 Identities=19% Similarity=0.225 Sum_probs=228.1
Q ss_pred chHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH-hccCCC
Q 016375 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSGIS 110 (390)
Q Consensus 32 ~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~ 110 (390)
+.+-.+++..+..++++++.++||||||..+..++++... .+.+++++.|++.++.|.++.+.+ ++...+
T Consensus 4 ~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g 74 (819)
T TIGR01970 4 HAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVG 74 (819)
T ss_pred hHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcC
Confidence 3445577788888899999999999999999888876541 345799999999999999999854 444444
Q ss_pred ceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhh-hcccccHH-HHHHHHHhCCCC
Q 016375 111 LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR-LLNDDFEK-SLDEILNVIPRM 188 (390)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~-~~~~~~~~-~~~~~~~~~~~~ 188 (390)
..+........ .....++|+|+|++.|.+.+.+. ..++++++|||||+|+ ..+.++.- .+..+...++..
T Consensus 75 ~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d--~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~d 146 (819)
T TIGR01970 75 QTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD--PELDGVGALIFDEFHERSLDADLGLALALDVQSSLRED 146 (819)
T ss_pred cEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC--cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCC
Confidence 44443333222 12345789999999999988764 3688999999999994 55555432 334555666777
Q ss_pred ccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcch-----hHHHHHHHhhCCCceEEEecch
Q 016375 189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD-----CYLVYILTEVSASSTMVFTRTC 263 (390)
Q Consensus 189 ~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lvf~~~~ 263 (390)
.++++||||+.... ...++.++..+....... .+...+.......+. ..+..++.+ ..+.+|||++++
T Consensus 147 lqlIlmSATl~~~~---l~~~l~~~~vI~~~gr~~---pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~ 219 (819)
T TIGR01970 147 LKILAMSATLDGER---LSSLLPDAPVVESEGRSF---PVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQ 219 (819)
T ss_pred ceEEEEeCCCCHHH---HHHHcCCCcEEEecCcce---eeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCH
Confidence 88999999998743 244554443343332211 122333322222211 122222322 467899999999
Q ss_pred hHHHHHHHHHHh---cCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCC-------
Q 016375 264 DATRLLALMLRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTN------- 333 (390)
Q Consensus 264 ~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~------- 333 (390)
.+++.+++.|.+ .++.+..+||.++..+|..+++.|.+|..+|||||+++++|+|+|++++||.++.+..
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 999999999987 3678999999999999999999999999999999999999999999999999998742
Q ss_pred -----------cchhhhccccccCCCCcceEEEEeccccHHH
Q 016375 334 -----------SKDYIHRVGRTARAGRTGVAISLVNQYELEW 364 (390)
Q Consensus 334 -----------~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~ 364 (390)
..++.||.||+||. .+|.|+.++++.+...
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 23589999999999 7899999999876544
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5e-35 Score=279.69 Aligned_cols=308 Identities=19% Similarity=0.250 Sum_probs=227.1
Q ss_pred chHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH-hccCCC
Q 016375 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSGIS 110 (390)
Q Consensus 32 ~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~ 110 (390)
+.+-.+++..+.+++++++.++||||||..+..++++... ...+++++.|++.++.|.++.+.+ ++...+
T Consensus 7 ~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~---------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g 77 (812)
T PRK11664 7 AAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG---------INGKIIMLEPRRLAARNVAQRLAEQLGEKPG 77 (812)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC---------cCCeEEEECChHHHHHHHHHHHHHHhCcccC
Confidence 4444577788888899999999999999998887775421 234799999999999999999854 444455
Q ss_pred ceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhh-ccccc-HHHHHHHHHhCCCC
Q 016375 111 LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL-LNDDF-EKSLDEILNVIPRM 188 (390)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~-~~~~~-~~~~~~~~~~~~~~ 188 (390)
..+....+.... ....++|+|+|++.|.+.+.+. ..++++++||+||+|.. ...++ ...+..+...+++.
T Consensus 78 ~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d--~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~ 149 (812)
T PRK11664 78 ETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD--PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDD 149 (812)
T ss_pred ceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC--CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCcc
Confidence 555554444332 1234689999999999988764 36889999999999963 33332 22334555666777
Q ss_pred ccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchh-----HHHHHHHhhCCCceEEEecch
Q 016375 189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC-----YLVYILTEVSASSTMVFTRTC 263 (390)
Q Consensus 189 ~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~lvf~~~~ 263 (390)
.++++||||+... .+ ..++.....+...... ..+...+...+...+.. .+..++. ...+.+|||+++.
T Consensus 150 lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~ 222 (812)
T PRK11664 150 LKLLIMSATLDND--RL-QQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLR-QESGSLLLFLPGV 222 (812)
T ss_pred ceEEEEecCCCHH--HH-HHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEEEEcCCH
Confidence 8899999999764 22 3455444434333221 11333333333222221 1222232 2468899999999
Q ss_pred hHHHHHHHHHHh---cCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCC-------
Q 016375 264 DATRLLALMLRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTN------- 333 (390)
Q Consensus 264 ~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~------- 333 (390)
.+++.+++.|.+ .++.+..+||.++..++..+++.|.+|..+|||||++++.|+|++++++||.++.+..
T Consensus 223 ~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~ 302 (812)
T PRK11664 223 GEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKT 302 (812)
T ss_pred HHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccC
Confidence 999999999987 4678899999999999999999999999999999999999999999999999876642
Q ss_pred -----------cchhhhccccccCCCCcceEEEEeccccHHH
Q 016375 334 -----------SKDYIHRVGRTARAGRTGVAISLVNQYELEW 364 (390)
Q Consensus 334 -----------~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~ 364 (390)
-.++.||.||+||. .+|.|+.++++.+...
T Consensus 303 g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 303 GLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER 343 (812)
T ss_pred CcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh
Confidence 24799999999998 6899999999876643
No 65
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=9.2e-35 Score=274.38 Aligned_cols=339 Identities=22% Similarity=0.261 Sum_probs=243.7
Q ss_pred cCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcC-CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcC
Q 016375 12 ELGLRDELVEACENVGWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (390)
Q Consensus 12 ~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 90 (390)
...+++.+.+.++..|+.++++.|++++.....+ +|+++++|||+|||+.++++++..+.+ .+.++++++|
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~--------~~~k~vYivP 84 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE--------GGGKVVYIVP 84 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh--------cCCcEEEEeC
Confidence 3447888999999999999999999999876654 899999999999999999999988876 3667999999
Q ss_pred CHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhc
Q 016375 91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 170 (390)
Q Consensus 91 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~ 170 (390)
+++|+.+.+++++.+ ...++++...+|+...... ...+++|+|+|++++-....+... ....+++||+||+|.+.
T Consensus 85 lkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 85 LKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLG 159 (766)
T ss_pred hHHHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecC
Confidence 999999999999833 4567999999999886553 234689999999999988877654 46789999999999665
Q ss_pred ccccHHHHHHHHHhC---CCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCC-------cc
Q 016375 171 NDDFEKSLDEILNVI---PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-------YK 240 (390)
Q Consensus 171 ~~~~~~~~~~~~~~~---~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 240 (390)
+..-+..+..+.... ....+++++|||.++.-+--.+...........+............+...... ..
T Consensus 160 d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~ 239 (766)
T COG1204 160 DRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLID 239 (766)
T ss_pred CcccCceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccch
Confidence 543444555554433 33368999999998855432222222111111111111111112222222211 22
Q ss_pred hhHHHHHHHhh-CCCceEEEecchhHHHHHHHHHHhc---------------------C----------------Cceee
Q 016375 241 DCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNL---------------------G----------------QRAIP 282 (390)
Q Consensus 241 ~~~~~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~---------------------~----------------~~~~~ 282 (390)
...+...+... .+++++|||++++.+...++.+... . ..+..
T Consensus 240 ~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gvaf 319 (766)
T COG1204 240 NLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAF 319 (766)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccc
Confidence 23333333333 5789999999999998888888720 0 11567
Q ss_pred ccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEE-----ec-----CCCCcchhhhccccccCCCCc--
Q 016375 283 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN-----YD-----IPTNSKDYIHRVGRTARAGRT-- 350 (390)
Q Consensus 283 ~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~-----~~-----~~~~~~~~~Q~~GR~~R~~~~-- 350 (390)
.|.+++.++|..+.+.|++|.++||++|+.+..|+|+|- +.||+ ++ .+.+..+++|+.||+||.|-+
T Consensus 320 HhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~ 398 (766)
T COG1204 320 HHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPA-RTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDY 398 (766)
T ss_pred cccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcc-eEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCC
Confidence 889999999999999999999999999999999999975 44443 44 345677899999999999743
Q ss_pred ceEEEEe-ccccHHH
Q 016375 351 GVAISLV-NQYELEW 364 (390)
Q Consensus 351 ~~~i~~~-~~~~~~~ 364 (390)
|..+++. +.++...
T Consensus 399 G~~~i~~~~~~~~~~ 413 (766)
T COG1204 399 GEAIILATSHDELEY 413 (766)
T ss_pred CcEEEEecCccchhH
Confidence 6666666 3444333
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.9e-35 Score=264.42 Aligned_cols=300 Identities=20% Similarity=0.157 Sum_probs=202.7
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchH---
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM--- 123 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--- 123 (390)
.+++.+|||+|||.+++.+++..+.+. .+.++++++|+++|+.|+++.+..+... .+..+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~ 70 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIK 70 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHh
Confidence 378999999999999999988775431 4568999999999999999999886322 233333332210
Q ss_pred ---------HHHHhc------CCCCCEEEeCCchhHHHhhcC-CC--ccC--CCccEEEEehhhhhcccccHHHHHHHHH
Q 016375 124 ---------QQTLAL------GKRPHIVVATPGRLMDHLTNT-KG--FSL--GTLKYLVLDEADRLLNDDFEKSLDEILN 183 (390)
Q Consensus 124 ---------~~~~~~------~~~~~i~i~t~~~l~~~~~~~-~~--~~~--~~~~~iIiDE~H~~~~~~~~~~~~~~~~ 183 (390)
...... ....+|+++|++++...+... .. ..+ -..+++|+||+|.+....+.. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~ 149 (358)
T TIGR01587 71 EMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLE 149 (358)
T ss_pred ccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHH
Confidence 000000 124679999999998876652 11 111 123789999999877654433 444444
Q ss_pred hCC-CCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEec--CCCcchhHHHHHHHh-hCCCceEEE
Q 016375 184 VIP-RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFV--PAKYKDCYLVYILTE-VSASSTMVF 259 (390)
Q Consensus 184 ~~~-~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~lvf 259 (390)
.+. ...|++++|||++..+..+................ .......+.+... ....+...+..++.. ..+.++|||
T Consensus 150 ~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf 228 (358)
T TIGR01587 150 VLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK-EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAII 228 (358)
T ss_pred HHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc-cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEE
Confidence 443 45689999999987666655443222111111100 0000011111111 112334445555543 357899999
Q ss_pred ecchhHHHHHHHHHHhcCC--ceeeccCCCCHHHHHH----HHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCC
Q 016375 260 TRTCDATRLLALMLRNLGQ--RAIPISGHMSQSKRLG----ALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTN 333 (390)
Q Consensus 260 ~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~----~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~ 333 (390)
|++++.++.+++.|++.+. .+..+||++++.+|.+ +++.|++|+..+||||+++++|+|+ +++.+|.+..|
T Consensus 229 ~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi-~~~~vi~~~~~-- 305 (358)
T TIGR01587 229 VNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDI-SADVMITELAP-- 305 (358)
T ss_pred ECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceecc-CCCEEEEcCCC--
Confidence 9999999999999988766 4899999999999876 4889999999999999999999999 47888877654
Q ss_pred cchhhhccccccCCCCc----ceEEEEecccc
Q 016375 334 SKDYIHRVGRTARAGRT----GVAISLVNQYE 361 (390)
Q Consensus 334 ~~~~~Q~~GR~~R~~~~----~~~i~~~~~~~ 361 (390)
..+|+||+||+||.|++ +.++++....+
T Consensus 306 ~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 306 IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 67899999999998754 36666665443
No 67
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.8e-34 Score=262.53 Aligned_cols=320 Identities=21% Similarity=0.202 Sum_probs=240.1
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+|+ .|++.|..++..+.+|+ +..+.||+|||+++++|++.... .++.++|++|++.|+.|.++.+..
T Consensus 99 ~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al---------~G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 99 VLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL---------AGLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred HhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh---------cCCeEEEEcCcHHHHHHHHHHHHH
Confidence 4788 79999999999999988 99999999999999999987654 467899999999999999999999
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCCC------------------------ccCCCcc
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKG------------------------FSLGTLK 159 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~~------------------------~~~~~~~ 159 (390)
+....++.+.++.|+.+...+ .....++|+++|...| ++++...-. ...+.+.
T Consensus 167 l~~~lGlsv~~i~gg~~~~~r--~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~ 244 (656)
T PRK12898 167 LYEALGLTVGCVVEDQSPDER--RAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLH 244 (656)
T ss_pred HHhhcCCEEEEEeCCCCHHHH--HHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccc
Confidence 988889999999998765433 3345789999998777 444443211 1135678
Q ss_pred EEEEehhhhhcc---------------c---ccHHHHHHH----------------------------------------
Q 016375 160 YLVLDEADRLLN---------------D---DFEKSLDEI---------------------------------------- 181 (390)
Q Consensus 160 ~iIiDE~H~~~~---------------~---~~~~~~~~~---------------------------------------- 181 (390)
++||||++.++= . .+......+
T Consensus 245 ~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~ 324 (656)
T PRK12898 245 FAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAW 324 (656)
T ss_pred eeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhc
Confidence 999999993210 0 000000000
Q ss_pred ----------HHhC------------------------------------------------------------------
Q 016375 182 ----------LNVI------------------------------------------------------------------ 185 (390)
Q Consensus 182 ----------~~~~------------------------------------------------------------------ 185 (390)
.+.+
T Consensus 325 ~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~ 404 (656)
T PRK12898 325 RGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRF 404 (656)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHH
Confidence 0000
Q ss_pred -CCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhh--CCCceEEEecc
Q 016375 186 -PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV--SASSTMVFTRT 262 (390)
Q Consensus 186 -~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lvf~~~ 262 (390)
....++.+||||......++...+..++..+.... +........+...+...+...+...+... .+.++||||++
T Consensus 405 Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k--p~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t 482 (656)
T PRK12898 405 FRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNR--PSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRS 482 (656)
T ss_pred HHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCC--CccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 00014889999998877777777766655443332 22222333444555666667777777653 36789999999
Q ss_pred hhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCC---CCC-----EEEEecCCCCc
Q 016375 263 CDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP---SVD-----MVINYDIPTNS 334 (390)
Q Consensus 263 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~---~~~-----~vi~~~~~~~~ 334 (390)
+..++.+++.|.+.|+++..+|+..+. ++..+..+..+...|+|||+++++|+|++ ++. +||.++.|.+.
T Consensus 483 ~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~ 560 (656)
T PRK12898 483 VAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSA 560 (656)
T ss_pred HHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCH
Confidence 999999999999999999999998654 44455555555667999999999999998 565 89999999999
Q ss_pred chhhhccccccCCCCcceEEEEeccccH
Q 016375 335 KDYIHRVGRTARAGRTGVAISLVNQYEL 362 (390)
Q Consensus 335 ~~~~Q~~GR~~R~~~~~~~i~~~~~~~~ 362 (390)
..|.|++||+||.|++|.++.|++.++.
T Consensus 561 r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 561 RIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHHHHhcccccCCCCCeEEEEEechhHH
Confidence 9999999999999999999999997663
No 68
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.4e-34 Score=257.00 Aligned_cols=324 Identities=19% Similarity=0.218 Sum_probs=246.4
Q ss_pred CCCCHHH-HHHHHhcCCCCCchHHHhhHHhHhcC------CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceE
Q 016375 13 LGLRDEL-VEACENVGWKTPSKIQAEAIPHALEG------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (390)
Q Consensus 13 ~~~~~~~-~~~l~~~g~~~~~~~Q~~~~~~i~~~------~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (390)
++.+.++ .+.+.+++| +|+..|+.++..|... -+-++.++.|||||.+++++++..+. .|.++
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---------~G~Q~ 314 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---------AGYQA 314 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---------cCCee
Confidence 3444444 456688999 8999999999998852 36899999999999999988887775 57889
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCCCccEE
Q 016375 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (390)
Q Consensus 86 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~i 161 (390)
...+||.-|+.|.++.+.+|....++++..++|......+.... .+..+++|+|+.-+.+. ..+.++.+|
T Consensus 315 ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~------V~F~~LgLV 388 (677)
T COG1200 315 ALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK------VEFHNLGLV 388 (677)
T ss_pred EEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc------eeecceeEE
Confidence 99999999999999999999999999999999998776655443 45799999998655442 457789999
Q ss_pred EEehhhhhcccccHHHHHHHHHhCCC-CccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcc
Q 016375 162 VLDEADRLLNDDFEKSLDEILNVIPR-MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK 240 (390)
Q Consensus 162 IiDE~H~~~~~~~~~~~~~~~~~~~~-~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (390)
|+||-|++.- .=+..+..... .++.+.|||||.|..-.+.-...-+.-.+... ...........++....
T Consensus 389 IiDEQHRFGV-----~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdEl----P~GRkpI~T~~i~~~~~ 459 (677)
T COG1200 389 IIDEQHRFGV-----HQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDEL----PPGRKPITTVVIPHERR 459 (677)
T ss_pred EEeccccccH-----HHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccC----CCCCCceEEEEeccccH
Confidence 9999997433 33333334444 67899999999996655433221111111111 11111223334444444
Q ss_pred hhHHHHHHHhh-CCCceEEEecchhH--------HHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhccCCccEEEE
Q 016375 241 DCYLVYILTEV-SASSTMVFTRTCDA--------TRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILIC 309 (390)
Q Consensus 241 ~~~~~~~~~~~-~~~~~lvf~~~~~~--------~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~ 309 (390)
...+..+..+. .+.++.+.|+-.++ +..+++.|+.. +.++..+||.|++.++.++++.|++|+++||||
T Consensus 460 ~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVa 539 (677)
T COG1200 460 PEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVA 539 (677)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEE
Confidence 44444443333 68889999997655 45666666654 456899999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCEEEEecCC-CCcchhhhccccccCCCCcceEEEEecccc
Q 016375 310 TDVASRGLDIPSVDMVINYDIP-TNSKDYIHRVGRTARAGRTGVAISLVNQYE 361 (390)
Q Consensus 310 t~~~~~G~d~~~~~~vi~~~~~-~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~ 361 (390)
|..++.|+|+|+++.+|+.++- ......-|..||+||.+..+.|+.++.+..
T Consensus 540 TTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 540 TTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred eeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999998775 577789999999999999999999999877
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2.7e-34 Score=266.59 Aligned_cols=318 Identities=16% Similarity=0.159 Sum_probs=227.1
Q ss_pred CchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCC
Q 016375 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS 110 (390)
Q Consensus 31 ~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 110 (390)
++|+|.+++..+..++..++.++||+|||+++++|++..++ .++.++|++|++.|+.|+++.+..+...++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL---------~g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNAL---------TGKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhh---------cCCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 46666666766666666899999999999999999765554 345699999999999999999999888888
Q ss_pred ceEEEEecCCc---hHHHHHhcCCCCCEEEeCCchh-HHHhhcC-----CCccCCCccEEEEehhhhhcccc--------
Q 016375 111 LRCAVLVGGVD---MMQQTLALGKRPHIVVATPGRL-MDHLTNT-----KGFSLGTLKYLVLDEADRLLNDD-------- 173 (390)
Q Consensus 111 ~~~~~~~~~~~---~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~-----~~~~~~~~~~iIiDE~H~~~~~~-------- 173 (390)
+.+....++.. ...........++|+++||+.| .+++... ....++.+.++|+||||.++-+.
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 88877665421 2222223335799999999999 5555322 12336788999999999532100
Q ss_pred --------cHHHHHHHHHhC------------------------------------------------------------
Q 016375 174 --------FEKSLDEILNVI------------------------------------------------------------ 185 (390)
Q Consensus 174 --------~~~~~~~~~~~~------------------------------------------------------------ 185 (390)
.......+...+
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 000110111100
Q ss_pred ---------------------------------------------------------CCCccEEEEeecCchhHHHHHHH
Q 016375 186 ---------------------------------------------------------PRMRQTYLFSATMTKKVKKLQRA 208 (390)
Q Consensus 186 ---------------------------------------------------------~~~~~~i~~saT~~~~~~~~~~~ 208 (390)
....++.+||+|......++.+.
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 00114788888876655555543
Q ss_pred hcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHh--hCCCceEEEecchhHHHHHHHHHHhcCCceeeccCC
Q 016375 209 CLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGH 286 (390)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 286 (390)
+ +-... ..+...+....-.....+.....+...+...+.+ ..+.++||||++++.++.+++.|.+.|+++..+|+.
T Consensus 380 Y-~l~v~-~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~ 457 (762)
T TIGR03714 380 Y-SLSVV-KIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQ 457 (762)
T ss_pred h-CCCEE-EcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCC
Confidence 3 33322 2222222221122223444555566666666654 468899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCC---------CCCEEEEecCCCCcchhhhccccccCCCCcceEEEEe
Q 016375 287 MSQSKRLGALNKFKAGECNILICTDVASRGLDIP---------SVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 357 (390)
Q Consensus 287 ~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~---------~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~ 357 (390)
+...++..+...++.| .|+|||+++++|+|++ ++++|+.++.|..... .|+.||+||.|++|.++.|+
T Consensus 458 ~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~i 534 (762)
T TIGR03714 458 NAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFV 534 (762)
T ss_pred ChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEE
Confidence 9988887777777666 6899999999999999 8999999999887766 99999999999999999999
Q ss_pred ccccH
Q 016375 358 NQYEL 362 (390)
Q Consensus 358 ~~~~~ 362 (390)
+..+.
T Consensus 535 s~eD~ 539 (762)
T TIGR03714 535 SLEDD 539 (762)
T ss_pred ccchh
Confidence 97664
No 70
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-34 Score=261.99 Aligned_cols=292 Identities=22% Similarity=0.254 Sum_probs=203.8
Q ss_pred CCchHHHhhHHhHhc----CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 30 TPSKIQAEAIPHALE----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~----~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.+|++|.+++.++.+ ++..++.+|||+|||.+++..+... ...+|||||+..|+.||.+.+...
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 599999999999998 7899999999999999876544432 333999999999999999888776
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhC
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~ 185 (390)
.... ..+..+.++...... ..|+|+|.+++.+.. ....+....+++||+||||+..+..+......+....
T Consensus 104 ~~~~-~~~g~~~~~~~~~~~-------~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~ 174 (442)
T COG1061 104 LLLN-DEIGIYGGGEKELEP-------AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAY 174 (442)
T ss_pred cCCc-cccceecCceeccCC-------CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHHHHHHhhhccc
Confidence 5431 122223333222111 469999999998752 1112334579999999999988876655444443332
Q ss_pred CCCccEEEEeecCchhHHHHHHHh--cCCCeEEecCCccccc-ccc---ceeEEe-------------------------
Q 016375 186 PRMRQTYLFSATMTKKVKKLQRAC--LKNPVKIEAASKYSTV-DTL---KQQYRF------------------------- 234 (390)
Q Consensus 186 ~~~~~~i~~saT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~---~~~~~~------------------------- 234 (390)
+ ++++||||........... ...+..+......... ..+ ......
T Consensus 175 ~----~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 175 P----RLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred c----eeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 2 8999999874321111111 1112222222111000 000 000000
Q ss_pred -------------cCCCcchhHHHHHHHhh-CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhc
Q 016375 235 -------------VPAKYKDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK 300 (390)
Q Consensus 235 -------------~~~~~~~~~~~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~ 300 (390)
.....+...+..++... .+.+++||+.+..++..++..+...+. +..+++.++..+|..+++.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 00111112222333333 478999999999999999999998777 788999999999999999999
Q ss_pred cCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCC
Q 016375 301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARA 347 (390)
Q Consensus 301 ~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 347 (390)
.|.+++|+++.++.+|+|+|+++++|......|...|.|++||+.|.
T Consensus 330 ~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 330 TGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred cCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999994
No 71
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-34 Score=275.83 Aligned_cols=324 Identities=22% Similarity=0.265 Sum_probs=250.6
Q ss_pred HHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHH
Q 016375 23 CENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (390)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 102 (390)
...+|...+|+.|.+++...+.|+++++.+|||.||+++|.+|++- .++.+++|.|..+|.+.+...+
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l------------~~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL------------LGGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred HHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc------------cCCceEEeccHHHHHHHHHHhh
Confidence 3458999999999999999999999999999999999999988874 4558999999999999877777
Q ss_pred HHhccCCCceEEEEecCCchHHHHHh---c-CC--CCCEEEeCCchhHHHhhcC-CCccCCC---ccEEEEehhhhhcc-
Q 016375 103 EALGSGISLRCAVLVGGVDMMQQTLA---L-GK--RPHIVVATPGRLMDHLTNT-KGFSLGT---LKYLVLDEADRLLN- 171 (390)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~--~~~i~i~t~~~l~~~~~~~-~~~~~~~---~~~iIiDE~H~~~~- 171 (390)
... ++....+.++......... + .+ ..+|+..||+++.....-. ....+.. +.++||||||..+.
T Consensus 325 ~~~----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 SKK----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hhc----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 443 4777888888776533222 2 22 6889999999885532211 1122333 78999999998877
Q ss_pred -cccHHHHHHHH---HhCCCCccEEEEeecCchhHHHHHHHhc--CCCeEEecCCccccccccceeEEecCCC---cchh
Q 016375 172 -DDFEKSLDEIL---NVIPRMRQTYLFSATMTKKVKKLQRACL--KNPVKIEAASKYSTVDTLKQQYRFVPAK---YKDC 242 (390)
Q Consensus 172 -~~~~~~~~~~~---~~~~~~~~~i~~saT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 242 (390)
.+|+..+..+. ..++. ..++++|||.+..+..-.-..+ .++..+.. ..+..++ .+...+.. ....
T Consensus 401 gHdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~---sfnR~NL--~yeV~~k~~~~~~~~ 474 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFKS---SFNRPNL--KYEVSPKTDKDALLD 474 (941)
T ss_pred cccccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceecc---cCCCCCc--eEEEEeccCccchHH
Confidence 45666555543 44444 3599999999887765444333 34443322 2223333 33333333 2222
Q ss_pred HHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC
Q 016375 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (390)
Q Consensus 243 ~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~ 322 (390)
.+.......++..+||||.++.+++.++..|.+.+..+..||.++++.+|..+...|..++++|++||-+.++|+|-|++
T Consensus 475 ~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DV 554 (941)
T KOG0351|consen 475 ILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDV 554 (941)
T ss_pred HHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCce
Confidence 33334445578899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHH
Q 016375 323 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (390)
Q Consensus 323 ~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~ 368 (390)
+.||||..|.+...|.|..|||||.|....|++|+...+...+...
T Consensus 555 R~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~l 600 (941)
T KOG0351|consen 555 RFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRL 600 (941)
T ss_pred eEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHH
Confidence 9999999999999999999999999999999999998876555544
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.1e-33 Score=264.90 Aligned_cols=320 Identities=18% Similarity=0.194 Sum_probs=235.7
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+|+ .|++.|..+...+.+|. +..+.||+|||+++++|++...+ .|+.++|++|+..|+.|.++.+..
T Consensus 74 ~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al---------~G~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 74 VLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL---------EGKGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred HhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH---------cCCCeEEEeCCHHHHHHHHHHHHH
Confidence 4688 78888888877776654 99999999999999999875554 477799999999999999999999
Q ss_pred hccCCCceEEEEecCCc-hHHHHHhcCCCCCEEEeCCchh-HHHhhcCC-----CccCCCccEEEEehhhhhccc-----
Q 016375 105 LGSGISLRCAVLVGGVD-MMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLND----- 172 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~-----~~~~~~~~~iIiDE~H~~~~~----- 172 (390)
+...+++.+.+..|+.+ ...+.. ...++|+++|+..| .+++...- ....+.+.++|+||+|.++=+
T Consensus 142 l~~~lGl~v~~i~g~~~~~~~r~~--~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tp 219 (790)
T PRK09200 142 VYEFLGLTVGLNFSDIDDASEKKA--IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTP 219 (790)
T ss_pred HHhhcCCeEEEEeCCCCcHHHHHH--hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCc
Confidence 99999999999999988 444433 24589999999888 44443321 123578899999999942100
Q ss_pred -----------ccHHHHHHHH--------------------------------------------------HhC------
Q 016375 173 -----------DFEKSLDEIL--------------------------------------------------NVI------ 185 (390)
Q Consensus 173 -----------~~~~~~~~~~--------------------------------------------------~~~------ 185 (390)
.+......+. +.+
T Consensus 220 liisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~ 299 (790)
T PRK09200 220 LIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLF 299 (790)
T ss_pred eeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHh
Confidence 0000000000 000
Q ss_pred -------------------------------------------------------------CCCccEEEEeecCchhHHH
Q 016375 186 -------------------------------------------------------------PRMRQTYLFSATMTKKVKK 204 (390)
Q Consensus 186 -------------------------------------------------------------~~~~~~i~~saT~~~~~~~ 204 (390)
.....+.+||+|......+
T Consensus 300 ~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e 379 (790)
T PRK09200 300 KRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKE 379 (790)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHH
Confidence 0001478888887665555
Q ss_pred HHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHh--hCCCceEEEecchhHHHHHHHHHHhcCCceee
Q 016375 205 LQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIP 282 (390)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~ 282 (390)
+.+.+ +-... ..+...+....-.....+.....+...+...+.. ..+.++||||++++.++.+++.|.+.|+++..
T Consensus 380 ~~~~Y-~l~v~-~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~ 457 (790)
T PRK09200 380 FFEVY-NMEVV-QIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNL 457 (790)
T ss_pred HHHHh-CCcEE-ECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEE
Confidence 54433 33332 2222222222112223334555566666666654 36889999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCC---CCCC-----EEEEecCCCCcchhhhccccccCCCCcceEE
Q 016375 283 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDI---PSVD-----MVINYDIPTNSKDYIHRVGRTARAGRTGVAI 354 (390)
Q Consensus 283 ~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~---~~~~-----~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i 354 (390)
+|+.+...++..+...+..| .|+|||+++++|+|+ +++. +||.++.|.+...|.|+.||+||.|++|.++
T Consensus 458 L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~ 535 (790)
T PRK09200 458 LNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ 535 (790)
T ss_pred ecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE
Confidence 99999888887777777666 699999999999999 6888 9999999999999999999999999999999
Q ss_pred EEeccccH
Q 016375 355 SLVNQYEL 362 (390)
Q Consensus 355 ~~~~~~~~ 362 (390)
.|++.++.
T Consensus 536 ~~is~eD~ 543 (790)
T PRK09200 536 FFISLEDD 543 (790)
T ss_pred EEEcchHH
Confidence 99987554
No 73
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-35 Score=229.57 Aligned_cols=330 Identities=31% Similarity=0.543 Sum_probs=279.1
Q ss_pred CcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEE
Q 016375 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL 88 (390)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil 88 (390)
.|.++-|..++.+.+-+.||..|++.|.++++...-|-++++.+..|.|||-.+.++.+..+ .+......+|++
T Consensus 43 gfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqi------epv~g~vsvlvm 116 (387)
T KOG0329|consen 43 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQI------EPVDGQVSVLVM 116 (387)
T ss_pred chhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhc------CCCCCeEEEEEE
Confidence 35666688899999999999999999999999999999999999999999988766555443 222235579999
Q ss_pred cCCHHHHHHHHHHHHHhccCC-CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhh
Q 016375 89 SPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (390)
Q Consensus 89 ~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H 167 (390)
|.+++|+-|...+..++.... ++++.++.|+....+....+.+-++|+|+||+.++...++. .+++++....|+|||+
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k-~l~lk~vkhFvlDEcd 195 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR-SLNLKNVKHFVLDECD 195 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc-cCchhhcceeehhhHH
Confidence 999999999999888776643 58999999999988888777778999999999999987764 4889999999999999
Q ss_pred hhcc-cccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccc-cccccceeEEecCCCcchhHHH
Q 016375 168 RLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS-TVDTLKQQYRFVPAKYKDCYLV 245 (390)
Q Consensus 168 ~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 245 (390)
.+.. -+.++.++++...-|..+|+..+|||.+..+...++.++.+|..+....+.. ....+.+.|..+....++..+.
T Consensus 196 kmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~ 275 (387)
T KOG0329|consen 196 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLN 275 (387)
T ss_pred HHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhh
Confidence 8776 5677889999999999999999999999999999999999998777766543 4567778888888888999998
Q ss_pred HHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEE
Q 016375 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV 325 (390)
Q Consensus 246 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~v 325 (390)
.++....-..++||+.+..... | +-+ +|+|+..++|+|+.+++.+
T Consensus 276 dLLd~LeFNQVvIFvKsv~Rl~-------------------------------f---~kr-~vat~lfgrgmdiervNi~ 320 (387)
T KOG0329|consen 276 DLLDVLEFNQVVIFVKSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIERVNIV 320 (387)
T ss_pred hhhhhhhhcceeEeeehhhhhh-------------------------------h---hhh-hHHhhhhccccCcccceee
Confidence 8888888889999998876510 1 113 8999999999999999999
Q ss_pred EEecCCCCcchhhhccccccCCCCcceEEEEecccc-HHHHHHHHHHhCCcceeec
Q 016375 326 INYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYE-LEWYLQIEKLIGMLYILFS 380 (390)
Q Consensus 326 i~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~ 380 (390)
+.||.|.+++.|..+.||+||.|.+|.+++|++..+ ...+..+.+.+...+.++|
T Consensus 321 ~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLp 376 (387)
T KOG0329|consen 321 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELP 376 (387)
T ss_pred eccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcC
Confidence 999999999999999999999999999999998654 4666677777766555555
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=5.3e-33 Score=256.32 Aligned_cols=320 Identities=18% Similarity=0.186 Sum_probs=235.2
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+|+ .|++.|.-....+.+|. +..++||+|||+++.+|++...+ .++.|.|++|+..|+.|.++.+..
T Consensus 52 ~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL---------~G~~V~VvTpt~~LA~qdae~~~~ 119 (745)
T TIGR00963 52 VLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL---------TGKGVHVVTVNDYLAQRDAEWMGQ 119 (745)
T ss_pred HhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH---------hCCCEEEEcCCHHHHHHHHHHHHH
Confidence 4687 67888887777666554 99999999999999988854443 355699999999999999999999
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCC-----CccCCCccEEEEehhhhhcccc-----
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLNDD----- 173 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~-----~~~~~~~~~iIiDE~H~~~~~~----- 173 (390)
+...+++++.++.++.+...+.... .++|+++|+..| ++++...- ...++.+.++|+||+|.+.-+.
T Consensus 120 l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpL 197 (745)
T TIGR00963 120 VYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPL 197 (745)
T ss_pred HhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHH
Confidence 9999999999999988865554443 489999999999 77776542 2346889999999999432100
Q ss_pred -----------cHH--------------------------------HHHH------------------HHHhC-------
Q 016375 174 -----------FEK--------------------------------SLDE------------------ILNVI------- 185 (390)
Q Consensus 174 -----------~~~--------------------------------~~~~------------------~~~~~------- 185 (390)
+.. .... +.+.+
T Consensus 198 iisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~ 277 (745)
T TIGR00963 198 IISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFE 277 (745)
T ss_pred hhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHh
Confidence 000 0000 00000
Q ss_pred ------------------------------------------------------------CCCccEEEEeecCchhHHHH
Q 016375 186 ------------------------------------------------------------PRMRQTYLFSATMTKKVKKL 205 (390)
Q Consensus 186 ------------------------------------------------------------~~~~~~i~~saT~~~~~~~~ 205 (390)
.....+.+||+|.......+
T Consensus 278 ~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~ 357 (745)
T TIGR00963 278 KDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEF 357 (745)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHH
Confidence 00114788888887655555
Q ss_pred HHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHH--HhhCCCceEEEecchhHHHHHHHHHHhcCCceeec
Q 016375 206 QRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL--TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 283 (390)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 283 (390)
...+--....+ +......... .....+.....+...+...+ .+..+.++||||+++..++.+++.|.+.++++..+
T Consensus 358 ~~iY~l~vv~I-Ptnkp~~R~d-~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~L 435 (745)
T TIGR00963 358 EKIYNLEVVVV-PTNRPVIRKD-LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVL 435 (745)
T ss_pred HHHhCCCEEEe-CCCCCeeeee-CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEe
Confidence 54443332222 2222111111 11122233333444444444 23478999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCC-------CCEEEEecCCCCcchhhhccccccCCCCcceEEEE
Q 016375 284 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS-------VDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 356 (390)
Q Consensus 284 ~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~-------~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~ 356 (390)
|+. ..+|+..+..|..+...|+|||+++++|+|++. .-+||.++.|.|...+.|+.||+||.|.+|.+..|
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 998 778899999999999999999999999999987 44999999999999999999999999999999999
Q ss_pred eccccH
Q 016375 357 VNQYEL 362 (390)
Q Consensus 357 ~~~~~~ 362 (390)
++..+.
T Consensus 514 ls~eD~ 519 (745)
T TIGR00963 514 LSLEDN 519 (745)
T ss_pred EeccHH
Confidence 987764
No 75
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.5e-33 Score=268.95 Aligned_cols=333 Identities=17% Similarity=0.121 Sum_probs=220.1
Q ss_pred CCchHHHhhHHhHhcC--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhcc
Q 016375 30 TPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 107 (390)
.|.|||.+++..+... ..+++..++|.|||+.+.+.+...+..+ ...++|||||. +|..||..++.+...
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-------~~~rvLIVvP~-sL~~QW~~El~~kF~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-------RAERVLILVPE-TLQHQWLVEMLRRFN 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-------CCCcEEEEcCH-HHHHHHHHHHHHHhC
Confidence 4899999999887653 4799999999999998766555444332 45679999997 899999999965432
Q ss_pred CCCceEEEEecCCchHHHH--HhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccc--ccHHHHHHHHH
Q 016375 108 GISLRCAVLVGGVDMMQQT--LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND--DFEKSLDEILN 183 (390)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~--~~~~~~~~~~~ 183 (390)
+....+.++....... .......+++|+|.+.+...-.....+.-..+++||+||||++... .....+..+..
T Consensus 224 ---l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~ 300 (956)
T PRK04914 224 ---LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQ 300 (956)
T ss_pred ---CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHH
Confidence 3444443332111000 0111247899999998875221111122346899999999988631 11122333333
Q ss_pred hCCCCccEEEEeecCchh-------------------HHHHHH------------------------------HhcCC--
Q 016375 184 VIPRMRQTYLFSATMTKK-------------------VKKLQR------------------------------ACLKN-- 212 (390)
Q Consensus 184 ~~~~~~~~i~~saT~~~~-------------------~~~~~~------------------------------~~~~~-- 212 (390)
.....+.++++||||... ...+.. ..+++
T Consensus 301 La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 301 LAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred HhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 333445699999998531 000100 00000
Q ss_pred ---------------------------------CeEEecCCccccccccceeEEe-------------------------
Q 016375 213 ---------------------------------PVKIEAASKYSTVDTLKQQYRF------------------------- 234 (390)
Q Consensus 213 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~------------------------- 234 (390)
...++.... .........+..
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~-~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l 459 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRA-AVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDML 459 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHH-hhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhc
Confidence 000000000 000000000000
Q ss_pred ---------------cCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHH-HhcCCceeeccCCCCHHHHHHHHHH
Q 016375 235 ---------------VPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALML-RNLGQRAIPISGHMSQSKRLGALNK 298 (390)
Q Consensus 235 ---------------~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (390)
.....+...+..+++...+.|+||||+++..+..+.+.| ...|+++..+||+++..+|..+++.
T Consensus 460 ~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~ 539 (956)
T PRK04914 460 YPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAY 539 (956)
T ss_pred CHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHH
Confidence 011123334555666667889999999999999999999 4679999999999999999999999
Q ss_pred hccC--CccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCC
Q 016375 299 FKAG--ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGM 374 (390)
Q Consensus 299 f~~~--~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 374 (390)
|+++ .++|||+|.++++|+|++.+++||+||.||++..|.||+||++|.|+++.+.+++...+......+.+.+..
T Consensus 540 F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 540 FADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred HhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 9984 599999999999999999999999999999999999999999999999888777765544445555555543
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=6.3e-33 Score=245.03 Aligned_cols=290 Identities=16% Similarity=0.180 Sum_probs=194.6
Q ss_pred HHHhhHHhHhcCCC--EEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccC---
Q 016375 34 IQAEAIPHALEGKD--LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG--- 108 (390)
Q Consensus 34 ~Q~~~~~~i~~~~~--~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~--- 108 (390)
||.++++.+.++.+ +++.+|||+|||.+++++++. ...++++++|+++|++|+.+.++++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH------------GENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH------------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 69999999998864 788999999999999887773 2335899999999999999998887532
Q ss_pred -CCceEEEEecCCchHH--------------------HHHhcCCCCCEEEeCCchhHHHhhcC---CCc----cCCCccE
Q 016375 109 -ISLRCAVLVGGVDMMQ--------------------QTLALGKRPHIVVATPGRLMDHLTNT---KGF----SLGTLKY 160 (390)
Q Consensus 109 -~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~i~i~t~~~l~~~~~~~---~~~----~~~~~~~ 160 (390)
.+..+..+.|...... +.......+.|+++||+.|...+... +.. .+..+++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 2455666666532220 00111235788999999887654431 111 1467899
Q ss_pred EEEehhhhhcccccHH-----HHHHHHHhCCCCccEEEEeecCchhHHHHHHHh--cCCCeEEecCCcc-----------
Q 016375 161 LVLDEADRLLNDDFEK-----SLDEILNVIPRMRQTYLFSATMTKKVKKLQRAC--LKNPVKIEAASKY----------- 222 (390)
Q Consensus 161 iIiDE~H~~~~~~~~~-----~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~--~~~~~~~~~~~~~----------- 222 (390)
||+||+|.+....... ....+........+++++|||+++.+....... +..+.........
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 228 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEAD 228 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcc
Confidence 9999999776433211 122222333334679999999998766665543 3333211111100
Q ss_pred -------ccccccceeEEecCCCcchhHHHHHH-------HhhCCCceEEEecchhHHHHHHHHHHhcC--CceeeccCC
Q 016375 223 -------STVDTLKQQYRFVPAKYKDCYLVYIL-------TEVSASSTMVFTRTCDATRLLALMLRNLG--QRAIPISGH 286 (390)
Q Consensus 223 -------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~~~~~ 286 (390)
...+.+...+.. ....+...+..+. +..++.+++|||++++.++.+++.|++.+ ..+..+||.
T Consensus 229 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 229 NKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred ccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 011123222222 2222222222221 22356799999999999999999999864 467889999
Q ss_pred CCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhcccccc
Q 016375 287 MSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTA 345 (390)
Q Consensus 287 ~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~ 345 (390)
+++.+|... ++.+|||||+++++|+|++.. .|| ++ |.+...|+||+||+|
T Consensus 308 ~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999888654 468899999999999999876 555 45 789999999999986
No 77
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-33 Score=237.52 Aligned_cols=331 Identities=21% Similarity=0.259 Sum_probs=241.8
Q ss_pred HHHHHHHh-cCCCCC-chHHHhhHHhHhc-CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 18 ELVEACEN-VGWKTP-SKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 18 ~~~~~l~~-~g~~~~-~~~Q~~~~~~i~~-~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
...+.|+. ||+..+ ++.|..++..+.+ ++++.+.+|||+||+++|.+|++. .+...++++|..+|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~------------~~gITIV~SPLiAL 73 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV------------HGGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH------------hCCeEEEehHHHHH
Confidence 34556655 687664 8999999988776 468999999999999999999886 35589999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc------CCCCCEEEeCCchhHHHhhcCC---CccCCCccEEEEeh
Q 016375 95 AIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL------GKRPHIVVATPGRLMDHLTNTK---GFSLGTLKYLVLDE 165 (390)
Q Consensus 95 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~i~t~~~l~~~~~~~~---~~~~~~~~~iIiDE 165 (390)
...+.+.+.++- +++..+.+..+..++...+ .....++..||++.....+... ...-..+.++++||
T Consensus 74 IkDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 74 IKDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDE 149 (641)
T ss_pred HHHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEech
Confidence 999998887764 5555666666555544433 2367899999986533222110 01234478999999
Q ss_pred hhhhcc--cccHHHHHHH---HHhCCCCccEEEEeecCchhHHHH--HHHhcCCCeEEecCCccccccccceeEEecCCC
Q 016375 166 ADRLLN--DDFEKSLDEI---LNVIPRMRQTYLFSATMTKKVKKL--QRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK 238 (390)
Q Consensus 166 ~H~~~~--~~~~~~~~~~---~~~~~~~~~~i~~saT~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (390)
+|..+. .+|+..+..+ ...++.. ..+.+|||.++.+.+- ....+..|+.+...+.....-.....+...- .
T Consensus 150 AHCVSQWGHDFRPDYL~LG~LRS~~~~v-pwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I-~ 227 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLGSLRSVCPGV-PWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFI-T 227 (641)
T ss_pred hhhHhhhccccCcchhhhhhHHhhCCCC-ceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHh-h
Confidence 998877 3455554444 3444443 4899999999877653 3344556665554443221111111110000 0
Q ss_pred cchhHHHHHHHhh-------------CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCcc
Q 016375 239 YKDCYLVYILTEV-------------SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305 (390)
Q Consensus 239 ~~~~~~~~~~~~~-------------~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 305 (390)
.....+..+..+. ..+-.||||.+++.+++++-.|...|+++..||.++...+|.++.++|-+++..
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P 307 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP 307 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC
Confidence 0111111111111 124479999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHH
Q 016375 306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYL 366 (390)
Q Consensus 306 ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~ 366 (390)
||++|...++|+|-|+++.|||.+.+.+..-|.|..||+||.|+..+|-.+++..+...+.
T Consensus 308 vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~ 368 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALN 368 (641)
T ss_pred EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999988876543
No 78
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=5.1e-33 Score=230.67 Aligned_cols=332 Identities=20% Similarity=0.262 Sum_probs=247.2
Q ss_pred ccCCCCHHHHHHHHh-cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEc
Q 016375 11 KELGLRDELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLS 89 (390)
Q Consensus 11 ~~~~~~~~~~~~l~~-~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 89 (390)
+++|+|.+..+.|+. +.+..+||.|.+++...+.+...++..|||.||+++|.+|++- ....+|++|
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~------------adg~alvi~ 141 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC------------ADGFALVIC 141 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh------------cCCceEeec
Confidence 678999999999875 7888999999999999999999999999999999999998875 456689999
Q ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHH----HHh--cCCCCCEEEeCCchhHH------HhhcCCCccCCC
Q 016375 90 PTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ----TLA--LGKRPHIVVATPGRLMD------HLTNTKGFSLGT 157 (390)
Q Consensus 90 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~i~i~t~~~l~~------~~~~~~~~~~~~ 157 (390)
|..+|.+.+.-.++.++.+ ...+........- ... ...+..++..||+++.. .+. +.+....
T Consensus 142 plislmedqil~lkqlgi~----as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkle--ka~~~~~ 215 (695)
T KOG0353|consen 142 PLISLMEDQILQLKQLGID----ASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLE--KALEAGF 215 (695)
T ss_pred hhHHHHHHHHHHHHHhCcc----hhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHH--HHhhcce
Confidence 9999999999899888743 3333333322211 111 22367799999998744 222 2244667
Q ss_pred ccEEEEehhhhhccc--ccHHHHH---HHHHhCCCCccEEEEeecCchhHHHHHHHhcCC--CeEEecCCccccccccce
Q 016375 158 LKYLVLDEADRLLND--DFEKSLD---EILNVIPRMRQTYLFSATMTKKVKKLQRACLKN--PVKIEAASKYSTVDTLKQ 230 (390)
Q Consensus 158 ~~~iIiDE~H~~~~~--~~~~~~~---~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 230 (390)
+.+|.+||+|..+.+ +|+..+. -+...++.. .++++|||..+.+-.-.+..+.- ...++.. .+.+++..
T Consensus 216 ~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~-~iigltatatn~vl~d~k~il~ie~~~tf~a~---fnr~nl~y 291 (695)
T KOG0353|consen 216 FKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGA-PIIGLTATATNHVLDDAKDILCIEAAFTFRAG---FNRPNLKY 291 (695)
T ss_pred eEEEeecceeehhhhCcccCcchHHHHHHHHhCCCC-ceeeeehhhhcchhhHHHHHHhHHhhheeecc---cCCCCcee
Confidence 899999999977663 3443333 223444444 49999999988765544443322 1222221 12222222
Q ss_pred eEEecCCCcc--hhHHHHHHH-hhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEE
Q 016375 231 QYRFVPAKYK--DCYLVYILT-EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307 (390)
Q Consensus 231 ~~~~~~~~~~--~~~~~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~il 307 (390)
....-|.... ...+..+++ ...+...||||-++..++.++..|+.+|+.+..+|..+.+.++..+-+.|..|++.|+
T Consensus 292 ev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvi 371 (695)
T KOG0353|consen 292 EVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVI 371 (695)
T ss_pred EeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEE
Confidence 2222222211 122222222 2246678999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCEEEEecCCCCcchhhh-------------------------------------------ccccc
Q 016375 308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIH-------------------------------------------RVGRT 344 (390)
Q Consensus 308 v~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q-------------------------------------------~~GR~ 344 (390)
|+|-+.++|+|-|+++.||+.+.|.|..+|.| ..||+
T Consensus 372 vatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgra 451 (695)
T KOG0353|consen 372 VATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRA 451 (695)
T ss_pred EEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcccc
Confidence 99999999999999999999999999999999 67999
Q ss_pred cCCCCcceEEEEeccccHHH
Q 016375 345 ARAGRTGVAISLVNQYELEW 364 (390)
Q Consensus 345 ~R~~~~~~~i~~~~~~~~~~ 364 (390)
||.+.++.|+.++.-.+...
T Consensus 452 grd~~~a~cilyy~~~difk 471 (695)
T KOG0353|consen 452 GRDDMKADCILYYGFADIFK 471 (695)
T ss_pred ccCCCcccEEEEechHHHHh
Confidence 99999999999997666543
No 79
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=5.6e-32 Score=267.23 Aligned_cols=292 Identities=22% Similarity=0.313 Sum_probs=211.1
Q ss_pred HHHHHHHHh-cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHH
Q 016375 17 DELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELA 95 (390)
Q Consensus 17 ~~~~~~l~~-~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 95 (390)
.++.+.++. .|+ .|++.|+.+++.++.|+++++.+|||+|||. +.+++...+.. .+++++|++||++|+
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa 134 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLV 134 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHH
Confidence 334455554 565 7999999999999999999999999999997 44555444432 467899999999999
Q ss_pred HHHHHHHHHhccCCCceEE---EEecCCchHHHHH---hc-CCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhh
Q 016375 96 IQISEQFEALGSGISLRCA---VLVGGVDMMQQTL---AL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR 168 (390)
Q Consensus 96 ~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~-~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~ 168 (390)
.|+.+.++.+....++... .++|+.+...+.. .. ...++|+|+||+.|.+.+.... . .++++|+||||+
T Consensus 135 ~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~-~~~~iVvDEaD~ 210 (1171)
T TIGR01054 135 IQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---P-KFDFIFVDDVDA 210 (1171)
T ss_pred HHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---C-CCCEEEEeChHh
Confidence 9999999998876555443 4678776654322 22 3458999999999988766522 2 799999999999
Q ss_pred hccc-----------ccHHH-HHHH----------------------HHhCCCCcc--EEEEeecCch-hHHHHHHHhcC
Q 016375 169 LLND-----------DFEKS-LDEI----------------------LNVIPRMRQ--TYLFSATMTK-KVKKLQRACLK 211 (390)
Q Consensus 169 ~~~~-----------~~~~~-~~~~----------------------~~~~~~~~~--~i~~saT~~~-~~~~~~~~~~~ 211 (390)
+... +|.+. +..+ .+..+...| ++++|||..+ .... ..+.
T Consensus 211 ~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r 287 (1171)
T TIGR01054 211 LLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFR 287 (1171)
T ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcc
Confidence 9872 34432 2332 223344444 5668999543 3221 2233
Q ss_pred CCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecch---hHHHHHHHHHHhcCCceeeccCCCC
Q 016375 212 NPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTC---DATRLLALMLRNLGQRAIPISGHMS 288 (390)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~ 288 (390)
....+..........++.+.+..... +...+..++... +.++||||+++ +.++.+++.|.+.|+++..+||+++
T Consensus 288 ~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~ 364 (1171)
T TIGR01054 288 ELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP 364 (1171)
T ss_pred cccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC
Confidence 33334443333344455555443322 234455666554 57899999999 9999999999999999999999986
Q ss_pred HHHHHHHHHHhccCCccEEEEe----CCCCCCCCCCC-CCEEEEecCCC
Q 016375 289 QSKRLGALNKFKAGECNILICT----DVASRGLDIPS-VDMVINYDIPT 332 (390)
Q Consensus 289 ~~~~~~~~~~f~~~~~~ilv~t----~~~~~G~d~~~-~~~vi~~~~~~ 332 (390)
...++.|++|+++|||+| +.+.+|+|+|+ ++.||+++.|.
T Consensus 365 ----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 365 ----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 368899999999999995 89999999999 89999999884
No 80
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=9.9e-31 Score=247.73 Aligned_cols=333 Identities=21% Similarity=0.212 Sum_probs=254.1
Q ss_pred cCCCC-HHHHHHHHhcCCCCCchHHHhhHHhHhc----C--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCce
Q 016375 12 ELGLR-DELVEACENVGWKTPSKIQAEAIPHALE----G--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (390)
Q Consensus 12 ~~~~~-~~~~~~l~~~g~~~~~~~Q~~~~~~i~~----~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (390)
.++.+ +...++-.+|+| +-++-|..+++.+.+ + -+-+|+|+.|.|||-+++-++..++. .|++
T Consensus 576 af~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~---------~GKQ 645 (1139)
T COG1197 576 AFPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM---------DGKQ 645 (1139)
T ss_pred CCCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc---------CCCe
Confidence 34444 444455566899 689999999999875 2 36899999999999998877777664 5789
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCCCccE
Q 016375 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 160 (390)
Q Consensus 85 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~ 160 (390)
|.++|||.-|++|.++.|++-..+.++++..+.--....+..... .+..||+|+|+.-| . +...+.++++
T Consensus 646 VAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~--kdv~FkdLGL 719 (1139)
T COG1197 646 VAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----S--KDVKFKDLGL 719 (1139)
T ss_pred EEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh----C--CCcEEecCCe
Confidence 999999999999999999998888899998887776666554443 45899999996432 2 2356788999
Q ss_pred EEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcc
Q 016375 161 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK 240 (390)
Q Consensus 161 iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (390)
+||||-|++.- .=.+.++.+.....++-|||||.|..-++.=....+.-.+..++...-. ...++.....
T Consensus 720 lIIDEEqRFGV-----k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p-----V~T~V~~~d~ 789 (1139)
T COG1197 720 LIIDEEQRFGV-----KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP-----VKTFVSEYDD 789 (1139)
T ss_pred EEEechhhcCc-----cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc-----eEEEEecCCh
Confidence 99999997543 3334444455556699999999998877665555554444433332111 1112222223
Q ss_pred hhHHHHHHHhh-CCCceEEEecchhHHHHHHHHHHhcC--CceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCC
Q 016375 241 DCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLG--QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGL 317 (390)
Q Consensus 241 ~~~~~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~ 317 (390)
...-..++++. +++++....|.++..+.+++.|++.- ..+.+.||.|+..+-++++..|.+|+++|||||.+++.|+
T Consensus 790 ~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGI 869 (1139)
T COG1197 790 LLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGI 869 (1139)
T ss_pred HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCc
Confidence 33334444444 68889888999999999999999873 4678999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCC-CCcchhhhccccccCCCCcceEEEEecccc------HHHHHHHHH
Q 016375 318 DIPSVDMVINYDIP-TNSKDYIHRVGRTARAGRTGVAISLVNQYE------LEWYLQIEK 370 (390)
Q Consensus 318 d~~~~~~vi~~~~~-~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~------~~~~~~~~~ 370 (390)
|+|+++++|+-+.. ....+..|..||+||.++.++|+.++.+.. .+.+..|+.
T Consensus 870 DIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 870 DIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred CCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 99999999988765 677889999999999999999999998543 345555554
No 81
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.2e-31 Score=244.98 Aligned_cols=338 Identities=21% Similarity=0.267 Sum_probs=241.6
Q ss_pred cCCCCCchHHHhhHHhHhc-CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhc-CCCCCCceEEEEcCCHHHHHHHHHHHH
Q 016375 26 VGWKTPSKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAEN-QRTVPAFFACVLSPTRELAIQISEQFE 103 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~~-~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~-~~~~~~~~~lil~P~~~l~~q~~~~~~ 103 (390)
++|..+...|.++++.+.+ +.+.+|+||||+|||..+++.++..+.+.... .....+.++++|+|.++|+.+..+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 6888899999999999886 46999999999999999999999888762221 112367789999999999999999988
Q ss_pred HhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCC--CccCCCccEEEEehhhhhcccccHHHHHHH
Q 016375 104 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTK--GFSLGTLKYLVLDEADRLLNDDFEKSLDEI 181 (390)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~--~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~ 181 (390)
+-....++.+.-++|+....... ...++|+|+||+++--.-++.. ..-++.+.+|||||+| +....-+..+..+
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVH-lLhd~RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVH-LLHDDRGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeeh-hhcCcccchHHHH
Confidence 77777789999999998766544 2358999999998833222211 1225678999999999 5565556666666
Q ss_pred HHhC-------CCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCC---cch-----hHHHH
Q 016375 182 LNVI-------PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK---YKD-----CYLVY 246 (390)
Q Consensus 182 ~~~~-------~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~ 246 (390)
..+. .+..+++++|||+++..+.......+.+.-+...........+.+.+...+.. ... ....+
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~k 341 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDK 341 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHH
Confidence 5543 34568999999999866643333333233333333333333344444433333 111 11122
Q ss_pred HHHh-hCCCceEEEecchhHHHHHHHHHHhc----C-------------------CceeeccCCCCHHHHHHHHHHhccC
Q 016375 247 ILTE-VSASSTMVFTRTCDATRLLALMLRNL----G-------------------QRAIPISGHMSQSKRLGALNKFKAG 302 (390)
Q Consensus 247 ~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~----~-------------------~~~~~~~~~~~~~~~~~~~~~f~~~ 302 (390)
.... ..+.+++|||.++..+...++.|.+. | .-..+.|.++...+|.-....|..|
T Consensus 342 v~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G 421 (1230)
T KOG0952|consen 342 VVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG 421 (1230)
T ss_pred HHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC
Confidence 2222 25889999999999888888877653 1 1145678889999999999999999
Q ss_pred CccEEEEeCCCCCCCCCCCCCEEEEecCC-----------CCcchhhhccccccCCC--CcceEEEEeccccHHHHHHH
Q 016375 303 ECNILICTDVASRGLDIPSVDMVINYDIP-----------TNSKDYIHRVGRTARAG--RTGVAISLVNQYELEWYLQI 368 (390)
Q Consensus 303 ~~~ilv~t~~~~~G~d~~~~~~vi~~~~~-----------~~~~~~~Q~~GR~~R~~--~~~~~i~~~~~~~~~~~~~~ 368 (390)
.++||+||..+..|+|+|. .+||+-+.+ .+..+..|..|||||.. ..|.++++.+.+....+..+
T Consensus 422 ~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 422 HIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred CceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHH
Confidence 9999999999999999965 566654332 23446799999999984 56888888877776665544
No 82
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=1.2e-30 Score=214.63 Aligned_cols=202 Identities=51% Similarity=0.782 Sum_probs=179.3
Q ss_pred cccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEc
Q 016375 10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLS 89 (390)
Q Consensus 10 ~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 89 (390)
|+++++++.+.+.|+.+|+..|+++|.++++.+.+++++++.+|||+|||.+++++++..+.... ...+++++|++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii~ 76 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALILA 76 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEEc
Confidence 67899999999999999999999999999999999999999999999999999999998877642 11467899999
Q ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhh
Q 016375 90 PTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL 169 (390)
Q Consensus 90 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~ 169 (390)
|+++|+.|+.+.+..+....++.+..+.|+.........+..+++|+|+|++.+...+.+.. ..+.+++++|+||+|.+
T Consensus 77 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~l~~lIvDE~h~~ 155 (203)
T cd00268 77 PTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK-LDLSKVKYLVLDEADRM 155 (203)
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC-CChhhCCEEEEeChHHh
Confidence 99999999999999988777788889999888777666666689999999999999887755 66788999999999998
Q ss_pred cccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEE
Q 016375 170 LNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 216 (390)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~ 216 (390)
.+..+...+..+...++..++++++|||+++....+...++..+..+
T Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 156 LDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 88888889999999999899999999999999988888888877654
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.98 E-value=1e-29 Score=240.96 Aligned_cols=307 Identities=21% Similarity=0.210 Sum_probs=210.8
Q ss_pred CCchHHHhhHHhHhcC---CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 30 TPSKIQAEAIPHALEG---KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~---~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
.|++.|.++++.+.++ +++++.++||+|||.+++.++...+. .++++|+++|+++|+.|+.+.+++..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~---------~g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA---------QGKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 5899999999999874 78999999999999998776655543 36679999999999999999998753
Q ss_pred cCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccccc------HH
Q 016375 107 SGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDF------EK 176 (390)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~------~~ 176 (390)
+..+..++++.....+...+ .+..+|+|+|+..+. ..+.++++||+||+|.....+. .+
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 36788889887765543332 346899999987653 2467899999999997654321 11
Q ss_pred HHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccc--cccccceeEEecCC-------CcchhHHHHH
Q 016375 177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS--TVDTLKQQYRFVPA-------KYKDCYLVYI 247 (390)
Q Consensus 177 ~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~ 247 (390)
.+. .........+++++||||+...-.... .+....+....... ..+.+ ....... ......+...
T Consensus 284 ~va-~~ra~~~~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~~~~~p~v--~~id~~~~~~~~~~~~ls~~l~~~ 358 (679)
T PRK05580 284 DLA-VVRAKLENIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAGGARLPEV--EIIDMRELLRGENGSFLSPPLLEA 358 (679)
T ss_pred HHH-HHHhhccCCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccccCCCCeE--EEEechhhhhhcccCCCCHHHHHH
Confidence 222 222334456799999998764443332 12222222222211 11111 0110100 0111223333
Q ss_pred HHh-h-CCCceEEEecchh------------------------------------------------------------H
Q 016375 248 LTE-V-SASSTMVFTRTCD------------------------------------------------------------A 265 (390)
Q Consensus 248 ~~~-~-~~~~~lvf~~~~~------------------------------------------------------------~ 265 (390)
+++ . .+.++++|+|.+. -
T Consensus 359 i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G 438 (679)
T PRK05580 359 IKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPG 438 (679)
T ss_pred HHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeecc
Confidence 332 2 4557888866421 2
Q ss_pred HHHHHHHHHhc--CCceeeccCCCC--HHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCC--CCc-----
Q 016375 266 TRLLALMLRNL--GQRAIPISGHMS--QSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP--TNS----- 334 (390)
Q Consensus 266 ~~~l~~~l~~~--~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~--~~~----- 334 (390)
++.+++.|++. +.++..+|+++. ..+++++++.|.+|+.+|||+|+++..|+|+|+++.|++++.. .+.
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra 518 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRA 518 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccch
Confidence 46777777775 677888898875 4678899999999999999999999999999999999777654 222
Q ss_pred -----chhhhccccccCCCCcceEEEEecccc
Q 016375 335 -----KDYIHRVGRTARAGRTGVAISLVNQYE 361 (390)
Q Consensus 335 -----~~~~Q~~GR~~R~~~~~~~i~~~~~~~ 361 (390)
..+.|+.||+||.+++|.+++.....+
T Consensus 519 ~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 519 SERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred HHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 468999999999999999997765443
No 84
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.98 E-value=2.4e-30 Score=249.34 Aligned_cols=318 Identities=18% Similarity=0.203 Sum_probs=215.7
Q ss_pred CCchHHHhhHHhHh----cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 30 TPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.|++||.+++.++. .+.++|++..+|.|||+.++.. +..+.... ....++|||||. ++..||.+++.+|
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~-----~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYR-----GITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhc-----CCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 58999999999986 4678999999999999876543 33332211 134568999996 6679999999999
Q ss_pred ccCCCceEEEEecCCchHHHHH---hcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHH
Q 016375 106 GSGISLRCAVLVGGVDMMQQTL---ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~ 182 (390)
... +.+..++|......... ......+|+|+|++.+.+...... -..+++||+||+|++-+.. . .....+
T Consensus 242 ~p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~---k~~W~~VIvDEAHrIKN~~-S-klskal 314 (1033)
T PLN03142 242 CPV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALK---RFSWRYIIIDEAHRIKNEN-S-LLSKTM 314 (1033)
T ss_pred CCC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhc---cCCCCEEEEcCccccCCHH-H-HHHHHH
Confidence 864 66677777654332211 123468999999999877543322 2358899999999776532 2 233444
Q ss_pred HhCCCCccEEEEeecCchhH-HHHHHH---h-------------------------------------------------
Q 016375 183 NVIPRMRQTYLFSATMTKKV-KKLQRA---C------------------------------------------------- 209 (390)
Q Consensus 183 ~~~~~~~~~i~~saT~~~~~-~~~~~~---~------------------------------------------------- 209 (390)
..+.. ...+++|+||..+. .++... .
T Consensus 315 r~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~ 393 (1033)
T PLN03142 315 RLFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG 393 (1033)
T ss_pred HHhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhh
Confidence 44443 34789999985421 111100 0
Q ss_pred cCCCe--EEecCCcccccc-----------------------cc-------------ce----------eEEecCCCcch
Q 016375 210 LKNPV--KIEAASKYSTVD-----------------------TL-------------KQ----------QYRFVPAKYKD 241 (390)
Q Consensus 210 ~~~~~--~~~~~~~~~~~~-----------------------~~-------------~~----------~~~~~~~~~~~ 241 (390)
++... .+.......... .. .. ....+....+.
T Consensus 394 LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl 473 (1033)
T PLN03142 394 LPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKM 473 (1033)
T ss_pred CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHH
Confidence 00000 000000000000 00 00 00000112333
Q ss_pred hHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccC---CccEEEEeCCCCCC
Q 016375 242 CYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG---ECNILICTDVASRG 316 (390)
Q Consensus 242 ~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~---~~~ilv~t~~~~~G 316 (390)
..+..++... .+.++|||+.....+..+.++|...++.+..++|.++..+|..+++.|++. ...+|++|.+++.|
T Consensus 474 ~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlG 553 (1033)
T PLN03142 474 VLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLG 553 (1033)
T ss_pred HHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccC
Confidence 4444555433 578999999999999999999999999999999999999999999999863 23578899999999
Q ss_pred CCCCCCCEEEEecCCCCcchhhhccccccCCCCcce--EEEEeccccH
Q 016375 317 LDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGV--AISLVNQYEL 362 (390)
Q Consensus 317 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~--~i~~~~~~~~ 362 (390)
+|+..+++||+||++|+|....|++||++|.|++.. ++.++..+..
T Consensus 554 INLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 554 INLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred CchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 999999999999999999999999999999998754 4556666554
No 85
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.98 E-value=3.3e-30 Score=251.12 Aligned_cols=303 Identities=23% Similarity=0.324 Sum_probs=206.4
Q ss_pred chHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHH-HHHHHHHHHhcCCCCCCceEEEEcCC----HHHHHHHHHHHHH-h
Q 016375 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALP-ILQALLEIAENQRTVPAFFACVLSPT----RELAIQISEQFEA-L 105 (390)
Q Consensus 32 ~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~-~~~~~~~~~~~~~~~~~~~~lil~P~----~~l~~q~~~~~~~-~ 105 (390)
+.+-.+++..+..++.+++.|+||||||.. +| ++... .. .....+++.-|+ ++++.++++++.. +
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~---g~----g~~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLEL---GR----GVKGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHc---CC----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 556667888888888899999999999985 34 32221 10 012234455575 4667777777654 4
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhh-hhcccccHH-HHHHHHH
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD-RLLNDDFEK-SLDEILN 183 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H-~~~~~~~~~-~~~~~~~ 183 (390)
+...++.+.. ......+++|+++|++.|++.+.+.. .++++++|||||+| ++.+.++.- .+..++.
T Consensus 147 G~~VGY~vrf----------~~~~s~~t~I~v~TpG~LL~~l~~d~--~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~ 214 (1294)
T PRK11131 147 GGCVGYKVRF----------NDQVSDNTMVKLMTDGILLAEIQQDR--LLMQYDTIIIDEAHERSLNIDFILGYLKELLP 214 (1294)
T ss_pred cceeceeecC----------ccccCCCCCEEEEChHHHHHHHhcCC--ccccCcEEEecCccccccccchHHHHHHHhhh
Confidence 4433333210 11123468999999999999988654 48899999999999 466666543 2333332
Q ss_pred hCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCc---chhHHHHHH------HhhCCC
Q 016375 184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY---KDCYLVYIL------TEVSAS 254 (390)
Q Consensus 184 ~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~ 254 (390)
.. +..++++||||+.. +.+.+.+.+.+. +...... ..+...+....... +...+..++ .....+
T Consensus 215 ~r-pdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~G 287 (1294)
T PRK11131 215 RR-PDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPG 287 (1294)
T ss_pred cC-CCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCC
Confidence 22 34689999999965 355555544443 3332221 11223333322211 122222222 123567
Q ss_pred ceEEEecchhHHHHHHHHHHhcCCc---eeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecC-
Q 016375 255 STMVFTRTCDATRLLALMLRNLGQR---AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI- 330 (390)
Q Consensus 255 ~~lvf~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~- 330 (390)
.+|||+++..+++.+++.|.+.+.+ +..+||.++..++..+++. .|..+|||||+++++|+|+|++++||.++.
T Consensus 288 dILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~ 365 (1294)
T PRK11131 288 DILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTA 365 (1294)
T ss_pred CEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCc
Confidence 8999999999999999999987764 6789999999999998875 477899999999999999999999999863
Q ss_pred --------------C---CCcchhhhccccccCCCCcceEEEEeccccHHHH
Q 016375 331 --------------P---TNSKDYIHRVGRTARAGRTGVAISLVNQYELEWY 365 (390)
Q Consensus 331 --------------~---~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~ 365 (390)
| .|..+|.||.||+||. .+|.|+.++++.+...+
T Consensus 366 k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~ 416 (1294)
T PRK11131 366 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSR 416 (1294)
T ss_pred cccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhh
Confidence 2 3446899999999999 68999999998776543
No 86
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=4.1e-29 Score=204.66 Aligned_cols=306 Identities=19% Similarity=0.235 Sum_probs=216.9
Q ss_pred CCchHHHhhHHhHh----cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 30 TPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.|+++|+.+-..+. +....+++|-||+|||-+. +..++.++. .|.++.+.+|+...+.+++.+++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~--------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN--------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh--------cCCeEEEecCcccchHHHHHHHHHh
Confidence 48999998776654 5678999999999999874 455555555 7888999999999999999999886
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhC
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~ 185 (390)
... ..+..++|+.+...+ +.++|+|..+|+++-.. |+++||||+|-+.-..-...-.++.+..
T Consensus 168 F~~--~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~a--------FD~liIDEVDAFP~~~d~~L~~Av~~ar 230 (441)
T COG4098 168 FSN--CDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQA--------FDLLIIDEVDAFPFSDDQSLQYAVKKAR 230 (441)
T ss_pred hcc--CCeeeEecCCchhcc-------ccEEEEehHHHHHHHhh--------ccEEEEeccccccccCCHHHHHHHHHhh
Confidence 554 455667777665433 58999999999886443 7899999999554433333344555556
Q ss_pred CCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcc-------hhHHHHHHHhh--CCCce
Q 016375 186 PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK-------DCYLVYILTEV--SASST 256 (390)
Q Consensus 186 ~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~ 256 (390)
......|++|||++..++...... +...+..+......+-....+.......+ ...+...++.+ .+.++
T Consensus 231 k~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~ 308 (441)
T COG4098 231 KKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPV 308 (441)
T ss_pred cccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcE
Confidence 666679999999998776544322 22333333333222222223333322111 22455555544 46899
Q ss_pred EEEecchhHHHHHHHHHHhc-CC-ceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCC--C
Q 016375 257 MVFTRTCDATRLLALMLRNL-GQ-RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP--T 332 (390)
Q Consensus 257 lvf~~~~~~~~~l~~~l~~~-~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~--~ 332 (390)
+||.++.+..+.+++.|+.. .. .+..+|+. ...|.+..++|++|+.++|++|.++++|+.+|++++.++-.-. .
T Consensus 309 liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vf 386 (441)
T COG4098 309 LIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVF 386 (441)
T ss_pred EEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccc
Confidence 99999999999999999654 22 33455554 5678999999999999999999999999999999988865433 6
Q ss_pred CcchhhhccccccCCC--CcceEEEEeccccHHHH
Q 016375 333 NSKDYIHRVGRTARAG--RTGVAISLVNQYELEWY 365 (390)
Q Consensus 333 ~~~~~~Q~~GR~~R~~--~~~~~i~~~~~~~~~~~ 365 (390)
+-..++|..||+||.- ..|.+..|=.--...+.
T Consensus 387 TesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 387 TESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred cHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHH
Confidence 7778999999999984 34666555444444433
No 87
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=1.4e-29 Score=241.71 Aligned_cols=310 Identities=20% Similarity=0.186 Sum_probs=199.8
Q ss_pred CCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccC
Q 016375 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 108 (390)
.+|+|+|..+.........++|.+|||+|||.+++.++...+..+ ....+++..|+.+.++++++++.++...
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~-------~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG-------LADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 379999998754433456799999999999998776555333221 3456999999999999999998764321
Q ss_pred C--CceEEEEecCCchHHHH--------------------HhcC----C---CCCEEEeCCchhHHHhhcCCCccCCCc-
Q 016375 109 I--SLRCAVLVGGVDMMQQT--------------------LALG----K---RPHIVVATPGRLMDHLTNTKGFSLGTL- 158 (390)
Q Consensus 109 ~--~~~~~~~~~~~~~~~~~--------------------~~~~----~---~~~i~i~t~~~l~~~~~~~~~~~~~~~- 158 (390)
. ...+...+|........ ..+. + -.+|+|+|.++++......+...++.+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 1 23456666654321100 0111 1 278999999999866555433223333
Q ss_pred ---cEEEEehhhhhcccccHHHHHHHHHhCC-CCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccc-----------
Q 016375 159 ---KYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS----------- 223 (390)
Q Consensus 159 ---~~iIiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 223 (390)
++|||||+|-+ +......+..+++.+. ....+|+||||++..........+...........++
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 48999999954 4444445555554432 2456999999999877643332211110000000000
Q ss_pred cc--c------ccceeEE--ec--CCCcc-hhHHHHHHHh-hCCCceEEEecchhHHHHHHHHHHhcC---CceeeccCC
Q 016375 224 TV--D------TLKQQYR--FV--PAKYK-DCYLVYILTE-VSASSTMVFTRTCDATRLLALMLRNLG---QRAIPISGH 286 (390)
Q Consensus 224 ~~--~------~~~~~~~--~~--~~~~~-~~~~~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~---~~~~~~~~~ 286 (390)
.. . ....... .. ..... ...+..++.. ..+.+++||||+++.++.+++.|++.+ .++..+|+.
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 00 0 0001111 11 11111 2233333333 357789999999999999999999865 578999999
Q ss_pred CCHHHH----HHHHHHh-ccCC---ccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCC
Q 016375 287 MSQSKR----LGALNKF-KAGE---CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR 349 (390)
Q Consensus 287 ~~~~~~----~~~~~~f-~~~~---~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~ 349 (390)
+...+| .++++.| ++|+ ..|||+|++++.|+|+ +++.+|....| .+.++||+||++|.+.
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999988 4567778 5565 4699999999999999 68998887666 5689999999999864
No 88
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=1.2e-29 Score=249.08 Aligned_cols=307 Identities=17% Similarity=0.212 Sum_probs=194.3
Q ss_pred CCchHHHhhHHhHhc-----CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 30 TPSKIQAEAIPHALE-----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~-----~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+|+||.+++..+.+ .++.+++++||||||.+++. ++..+.+.. ..+++||++|+++|+.|+.+.+..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~------~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAK------RFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcC------ccCeEEEEecHHHHHHHHHHHHHh
Confidence 589999999987763 35799999999999988543 444444322 346899999999999999999988
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcC----CCccCCCccEEEEehhhhhccc--------
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT----KGFSLGTLKYLVLDEADRLLND-------- 172 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~----~~~~~~~~~~iIiDE~H~~~~~-------- 172 (390)
+............+... ...........|+|+|.+++.+.+... ..+....+++||+||||+....
T Consensus 486 ~~~~~~~~~~~i~~i~~--L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKG--LEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhh--hhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 74322111111111000 011112345799999999997765322 1134678999999999986420
Q ss_pred -------ccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHH--------------HhcC---CCeEEecCCcc-----c
Q 016375 173 -------DFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQR--------------ACLK---NPVKIEAASKY-----S 223 (390)
Q Consensus 173 -------~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~--------------~~~~---~~~~~~~~~~~-----~ 223 (390)
++...+..++..+. ...+++||||......... .++- .|..+...... .
T Consensus 564 ~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred hccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 11345666666553 3489999999753321110 0111 01111110000 0
Q ss_pred cc---cccce---eE--EecCCCc--c-------------hhH----HHHHHHhhCCCceEEEecchhHHHHHHHHHHhc
Q 016375 224 TV---DTLKQ---QY--RFVPAKY--K-------------DCY----LVYILTEVSASSTMVFTRTCDATRLLALMLRNL 276 (390)
Q Consensus 224 ~~---~~~~~---~~--~~~~~~~--~-------------~~~----~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~ 276 (390)
.. ..... .. ...+... . ... +...+.....+++||||.+..+|+.+.+.|.+.
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 00 00000 00 0000000 0 000 111111223479999999999999999887763
Q ss_pred ------CC---ceeeccCCCCHHHHHHHHHHhccCCc-cEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccC
Q 016375 277 ------GQ---RAIPISGHMSQSKRLGALNKFKAGEC-NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTAR 346 (390)
Q Consensus 277 ------~~---~~~~~~~~~~~~~~~~~~~~f~~~~~-~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R 346 (390)
+. .+..+++..+ ++.++++.|+++.. .|+|+++++.+|+|+|.+++||+++++.|...|.|++||+.|
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR 799 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATR 799 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhcc
Confidence 11 3456777765 45789999999876 589999999999999999999999999999999999999999
Q ss_pred CCC
Q 016375 347 AGR 349 (390)
Q Consensus 347 ~~~ 349 (390)
...
T Consensus 800 ~~~ 802 (1123)
T PRK11448 800 LCP 802 (1123)
T ss_pred CCc
Confidence 854
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=4.1e-29 Score=228.70 Aligned_cols=288 Identities=20% Similarity=0.212 Sum_probs=190.6
Q ss_pred EEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh
Q 016375 49 IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128 (390)
Q Consensus 49 li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (390)
++.++||+|||.+++..+.+.+ . .++++|+++|+.+|+.|+++.+++.. +..+..++++....++...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~--------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~ 68 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-A--------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQA 68 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H--------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHH
Confidence 4789999999999865544443 3 46789999999999999999998754 2567788888766554333
Q ss_pred c----CCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccccc------HHHHHHHHHhCCCCccEEEEeecC
Q 016375 129 L----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDF------EKSLDEILNVIPRMRQTYLFSATM 198 (390)
Q Consensus 129 ~----~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~------~~~~~~~~~~~~~~~~~i~~saT~ 198 (390)
+ ..+.+|+|+|+..++ ..+.++++|||||.|.....+. .+.+....... ...+++++||||
T Consensus 69 ~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~-~~~~vil~SATP 139 (505)
T TIGR00595 69 WRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK-FNCPVVLGSATP 139 (505)
T ss_pred HHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh-cCCCEEEEeCCC
Confidence 2 346899999987663 2467799999999997664221 12222233333 345699999997
Q ss_pred chhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCC----cchhHHHHHHHh-h-CCCceEEEecchhH-------
Q 016375 199 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK----YKDCYLVYILTE-V-SASSTMVFTRTCDA------- 265 (390)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~-~~~~~lvf~~~~~~------- 265 (390)
+...-.... .+........................... .....+...+.+ . .+.++|||+|.+..
T Consensus 140 sles~~~~~--~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~ 217 (505)
T TIGR00595 140 SLESYHNAK--QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCR 217 (505)
T ss_pred CHHHHHHHh--cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhh
Confidence 754333221 12222222221111111001111111111 111223333332 2 46789999665432
Q ss_pred -----------------------------------------------------HHHHHHHHHhc--CCceeeccCCCCHH
Q 016375 266 -----------------------------------------------------TRLLALMLRNL--GQRAIPISGHMSQS 290 (390)
Q Consensus 266 -----------------------------------------------------~~~l~~~l~~~--~~~~~~~~~~~~~~ 290 (390)
.+.+.+.|++. +.++..+|+++...
T Consensus 218 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~ 297 (505)
T TIGR00595 218 SCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSR 297 (505)
T ss_pred hCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccC
Confidence 47778888876 66888899988766
Q ss_pred HH--HHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCC--C----------cchhhhccccccCCCCcceEEEE
Q 016375 291 KR--LGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT--N----------SKDYIHRVGRTARAGRTGVAISL 356 (390)
Q Consensus 291 ~~--~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~--~----------~~~~~Q~~GR~~R~~~~~~~i~~ 356 (390)
.+ +++++.|.+|+.+|||+|+++..|+|+|+++.|++++... + ...+.|+.||+||.+++|.+++.
T Consensus 298 ~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiq 377 (505)
T TIGR00595 298 KGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQ 377 (505)
T ss_pred ccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEE
Confidence 55 8999999999999999999999999999999987665532 1 24589999999999888988865
Q ss_pred ecc
Q 016375 357 VNQ 359 (390)
Q Consensus 357 ~~~ 359 (390)
...
T Consensus 378 t~~ 380 (505)
T TIGR00595 378 TYN 380 (505)
T ss_pred eCC
Confidence 533
No 90
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.97 E-value=4.9e-29 Score=223.68 Aligned_cols=317 Identities=20% Similarity=0.231 Sum_probs=229.1
Q ss_pred CCchHHHhhHHhHhc----CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 30 TPSKIQAEAIPHALE----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~----~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.+++||.+.+.++.. +-++++...+|.|||+..+ +++..+..... ..++.||+||...| .+|.+++++|
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~~-----~~GPfLVi~P~StL-~NW~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRKG-----IPGPFLVIAPKSTL-DNWMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhcC-----CCCCeEEEeeHhhH-HHHHHHHHHh
Confidence 589999999999764 5689999999999998754 33333332111 23346999998776 8899999999
Q ss_pred ccCCCceEEEEecCCchHHHHH---hcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHH
Q 016375 106 GSGISLRCAVLVGGVDMMQQTL---ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~ 182 (390)
++. +++.+++|+........ ......+|+|+|++..++.-.-.+ --.+.++||||+|++-+... .+..++
T Consensus 240 ~P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk---~~~W~ylvIDEaHRiKN~~s--~L~~~l 312 (971)
T KOG0385|consen 240 TPS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLK---KFNWRYLVIDEAHRIKNEKS--KLSKIL 312 (971)
T ss_pred CCC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHh---cCCceEEEechhhhhcchhh--HHHHHH
Confidence 876 88888999886543222 234589999999999877422212 23478999999998876432 444555
Q ss_pred HhCCCCccEEEEeecCchhHHHH---------------------------------------------------------
Q 016375 183 NVIPRMRQTYLFSATMTKKVKKL--------------------------------------------------------- 205 (390)
Q Consensus 183 ~~~~~~~~~i~~saT~~~~~~~~--------------------------------------------------------- 205 (390)
..+.... .+++|+||-.+.-..
T Consensus 313 r~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s 391 (971)
T KOG0385|consen 313 REFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKS 391 (971)
T ss_pred HHhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhc
Confidence 5555544 678899964321110
Q ss_pred -------------------------------------------------HHHhcCCCeEEecCCccccccccceeEEecC
Q 016375 206 -------------------------------------------------QRACLKNPVKIEAASKYSTVDTLKQQYRFVP 236 (390)
Q Consensus 206 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (390)
.+..++.|+.+.. .+.. +......+.+.
T Consensus 392 LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g-~ePg--~pyttdehLv~ 468 (971)
T KOG0385|consen 392 LPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDG-AEPG--PPYTTDEHLVT 468 (971)
T ss_pred CCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCC-CCCC--CCCCcchHHHh
Confidence 0111122222211 0000 01111122233
Q ss_pred CCcchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCC---ccEEEEeC
Q 016375 237 AKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE---CNILICTD 311 (390)
Q Consensus 237 ~~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ilv~t~ 311 (390)
+..+...+..++... +++++|||.+.-...+.+.+++.-.++..+.++|.++.++|...++.|+... +-+|++|.
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 566667777777654 7899999999999999999999999999999999999999999999998743 44688999
Q ss_pred CCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcc--eEEEEeccccHHH
Q 016375 312 VASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTG--VAISLVNQYELEW 364 (390)
Q Consensus 312 ~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~--~~i~~~~~~~~~~ 364 (390)
+.+.|+|+..+++||+||..|+|..-+|+..||+|.|++. .|+-+++++..+.
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 9999999999999999999999999999999999999775 4566777777654
No 91
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2e-28 Score=229.45 Aligned_cols=319 Identities=18% Similarity=0.207 Sum_probs=230.2
Q ss_pred cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
+|+ .+++.|. +..+.-++.-+..++||+|||+++.+|++..++ .++.++|++|++.|+.|.++.+..+
T Consensus 79 lg~-~~ydvQl--iGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al---------~G~~V~VvTpn~yLA~qd~e~m~~l 146 (896)
T PRK13104 79 LGL-RHFDVQL--IGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAI---------SGRGVHIVTVNDYLAKRDSQWMKPI 146 (896)
T ss_pred cCC-CcchHHH--hhhhhhccCccccccCCCCchHHHHHHHHHHHh---------cCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 565 3455554 444444567788999999999999999987664 3445999999999999999999999
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCCCccC-----CCccEEEEehhhhhcccc------
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKGFSL-----GTLKYLVLDEADRLLNDD------ 173 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~~~~~-----~~~~~iIiDE~H~~~~~~------ 173 (390)
...+++.+.++.|+.+...+...+ .++|+++|+..| ++++.....+++ +.+.++|+||+|.++=+.
T Consensus 147 ~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLI 224 (896)
T PRK13104 147 YEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLI 224 (896)
T ss_pred hcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCcee
Confidence 998999999999988776655444 589999999999 888877543433 578999999999321000
Q ss_pred ----------cH--------------------------------------HHHHHHH-----------------------
Q 016375 174 ----------FE--------------------------------------KSLDEIL----------------------- 182 (390)
Q Consensus 174 ----------~~--------------------------------------~~~~~~~----------------------- 182 (390)
.. ..+..++
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~ 304 (896)
T PRK13104 225 ISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHH 304 (896)
T ss_pred eeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHH
Confidence 00 0111111
Q ss_pred --HhC-------------------------------------------------------------------CCCccEEE
Q 016375 183 --NVI-------------------------------------------------------------------PRMRQTYL 193 (390)
Q Consensus 183 --~~~-------------------------------------------------------------------~~~~~~i~ 193 (390)
..+ ....++-+
T Consensus 305 i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsG 384 (896)
T PRK13104 305 VNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSG 384 (896)
T ss_pred HHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhcc
Confidence 000 00013777
Q ss_pred EeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHH--hhCCCceEEEecchhHHHHHHH
Q 016375 194 FSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLAL 271 (390)
Q Consensus 194 ~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~ 271 (390)
||+|......++...+-.....+ +...+....-.....+.....+...+...+. +..+.|+||||.+++.++.+++
T Consensus 385 MTGTa~te~~Ef~~iY~l~Vv~I--Ptnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~ 462 (896)
T PRK13104 385 MTGTADTEAYEFQQIYNLEVVVI--PTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQ 462 (896)
T ss_pred CCCCChhHHHHHHHHhCCCEEEC--CCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHH
Confidence 88887666555555543332222 2222222111222333444444445544443 3478999999999999999999
Q ss_pred HHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC-----------------------------
Q 016375 272 MLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV----------------------------- 322 (390)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~----------------------------- 322 (390)
.|.+.++++.++|+.+...++..+.+.|+.|. |+|||+++++|+|+.=-
T Consensus 463 ~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (896)
T PRK13104 463 LLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKR 540 (896)
T ss_pred HHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhh
Confidence 99999999999999999999999999999995 99999999999998411
Q ss_pred ---------CEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccH
Q 016375 323 ---------DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (390)
Q Consensus 323 ---------~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~ 362 (390)
=+||....+.|..--.|..||+||+|.+|.+-.|++-++.
T Consensus 541 ~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 541 HDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1677777888888889999999999999999999886553
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.1e-27 Score=224.32 Aligned_cols=320 Identities=19% Similarity=0.184 Sum_probs=233.0
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+|+ .+++.|.-..-.+ ++.-+..+.||+|||+++.+|++...+ .++.+-|++|+..|+.|-++.+..
T Consensus 77 ~lg~-~~~dvQlig~l~L--~~G~Iaem~TGeGKTLva~lpa~l~aL---------~G~~V~IvTpn~yLA~rd~e~~~~ 144 (830)
T PRK12904 77 VLGM-RHFDVQLIGGMVL--HEGKIAEMKTGEGKTLVATLPAYLNAL---------TGKGVHVVTVNDYLAKRDAEWMGP 144 (830)
T ss_pred HhCC-CCCccHHHhhHHh--cCCchhhhhcCCCcHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHH
Confidence 3677 5777776555444 445688999999999999988864433 344577999999999999999999
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCCCc-----cCCCccEEEEehhhhhcccc-----
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKGF-----SLGTLKYLVLDEADRLLNDD----- 173 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~~~-----~~~~~~~iIiDE~H~~~~~~----- 173 (390)
+...+++.+.++.++.+...+...+ .++|+++|+..| ++++...... ..+.+.++||||++.++=+.
T Consensus 145 l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpL 222 (830)
T PRK12904 145 LYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPL 222 (830)
T ss_pred HHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCce
Confidence 9988999999999988877766554 489999999999 8777654322 25778999999999421100
Q ss_pred -----------cHHHHHHHHHhC---------------------------------------------------------
Q 016375 174 -----------FEKSLDEILNVI--------------------------------------------------------- 185 (390)
Q Consensus 174 -----------~~~~~~~~~~~~--------------------------------------------------------- 185 (390)
+...+..+...+
T Consensus 223 iiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~ 302 (830)
T PRK12904 223 IISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFK 302 (830)
T ss_pred eeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHh
Confidence 000001111100
Q ss_pred ------------------------------------------------------------CCCccEEEEeecCchhHHHH
Q 016375 186 ------------------------------------------------------------PRMRQTYLFSATMTKKVKKL 205 (390)
Q Consensus 186 ------------------------------------------------------------~~~~~~i~~saT~~~~~~~~ 205 (390)
...+++.+||+|......++
T Consensus 303 ~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~ 382 (830)
T PRK12904 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382 (830)
T ss_pred cCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHH
Confidence 00114888888887665555
Q ss_pred HHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHh--hCCCceEEEecchhHHHHHHHHHHhcCCceeec
Q 016375 206 QRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 283 (390)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 283 (390)
...+--....+ +...+....-.....+.....+...+...+.+ ..+.|+||||+++..++.+++.|.+.++++..+
T Consensus 383 ~~iY~l~vv~I--Ptnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vL 460 (830)
T PRK12904 383 REIYNLDVVVI--PTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVL 460 (830)
T ss_pred HHHhCCCEEEc--CCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEec
Confidence 55443332222 22222221111223334455566666666654 578899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC--------------------------------------CEE
Q 016375 284 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV--------------------------------------DMV 325 (390)
Q Consensus 284 ~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~--------------------------------------~~v 325 (390)
|+. +.+|+..+..|..+...|+|||+++++|+|++=- =+|
T Consensus 461 nak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhV 538 (830)
T PRK12904 461 NAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHV 538 (830)
T ss_pred cCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEE
Confidence 995 7788999999999999999999999999998432 167
Q ss_pred EEecCCCCcchhhhccccccCCCCcceEEEEeccccH
Q 016375 326 INYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (390)
Q Consensus 326 i~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~ 362 (390)
|....+.|..--.|..||+||+|.+|.+-.|++-++.
T Consensus 539 igTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 539 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred EecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 7778888888899999999999999999999986553
No 93
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=2.9e-28 Score=238.45 Aligned_cols=308 Identities=21% Similarity=0.284 Sum_probs=207.6
Q ss_pred chHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH-hccCCC
Q 016375 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSGIS 110 (390)
Q Consensus 32 ~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~ 110 (390)
+.+..+++..+..++.++|.|+||||||..... ++. +... .....+++.-|++.-+...++.+.+ ++...+
T Consensus 69 ~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq-~ll---e~~~----~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG 140 (1283)
T TIGR01967 69 SAKREDIAEAIAENQVVIIAGETGSGKTTQLPK-ICL---ELGR----GSHGLIGHTQPRRLAARTVAQRIAEELGTPLG 140 (1283)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHH-HHH---HcCC----CCCceEecCCccHHHHHHHHHHHHHHhCCCcc
Confidence 444457788888888999999999999975322 221 1110 1233567778988888887777655 333333
Q ss_pred ceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhh-hhcccccHHH-HHHHHHhCCCC
Q 016375 111 LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD-RLLNDDFEKS-LDEILNVIPRM 188 (390)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H-~~~~~~~~~~-~~~~~~~~~~~ 188 (390)
..+.......+ ....++.|.++|++.|++.+.... .+..+++|||||+| +..+.++.-. +..++...+ .
T Consensus 141 ~~VGY~vR~~~------~~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rp-d 211 (1283)
T TIGR01967 141 EKVGYKVRFHD------QVSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRP-D 211 (1283)
T ss_pred eEEeeEEcCCc------ccCCCceeeeccccHHHHHhhhCc--ccccCcEEEEcCcchhhccchhHHHHHHHHHhhCC-C
Confidence 33221111111 123467899999999999887754 47899999999999 4666665433 455544443 4
Q ss_pred ccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCC------cchhHHHHHHH---hhCCCceEEE
Q 016375 189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK------YKDCYLVYILT---EVSASSTMVF 259 (390)
Q Consensus 189 ~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~lvf 259 (390)
.++++||||+.. ..+.+.+.+.+. +....... .+...+...... .....+...+. ....+.+|||
T Consensus 212 LKlIlmSATld~--~~fa~~F~~apv-I~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVF 285 (1283)
T TIGR01967 212 LKIIITSATIDP--ERFSRHFNNAPI-IEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIF 285 (1283)
T ss_pred CeEEEEeCCcCH--HHHHHHhcCCCE-EEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEe
Confidence 579999999864 455555544443 33222111 112222222111 11112222222 2245789999
Q ss_pred ecchhHHHHHHHHHHhcCC---ceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCC-----
Q 016375 260 TRTCDATRLLALMLRNLGQ---RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP----- 331 (390)
Q Consensus 260 ~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~----- 331 (390)
+++..+++.+++.|.+.+. .+..+||.++..++..+++.+ +..+|+++|++++.|+|+|++++||.++.+
T Consensus 286 Lpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~y 363 (1283)
T TIGR01967 286 LPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRY 363 (1283)
T ss_pred CCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccc
Confidence 9999999999999998643 578899999999998886543 346899999999999999999999998843
Q ss_pred -------------CCcchhhhccccccCCCCcceEEEEeccccHHHH
Q 016375 332 -------------TNSKDYIHRVGRTARAGRTGVAISLVNQYELEWY 365 (390)
Q Consensus 332 -------------~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~ 365 (390)
.|..++.||.||+||.+ +|.|+.++++.+...+
T Consensus 364 d~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~ 409 (1283)
T TIGR01967 364 SYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSR 409 (1283)
T ss_pred ccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhh
Confidence 25568999999999997 8999999998776543
No 94
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=6.4e-28 Score=224.86 Aligned_cols=320 Identities=18% Similarity=0.183 Sum_probs=227.7
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+|+ .+++.|.-..-.+. +.-+..+.||+|||+++.+|++..++ .|+.|-+++|+..|+.+-++.+..
T Consensus 76 ~~g~-~~~dvQlig~l~l~--~G~iaEm~TGEGKTLvA~l~a~l~al---------~G~~v~vvT~neyLA~Rd~e~~~~ 143 (796)
T PRK12906 76 VLGL-RPFDVQIIGGIVLH--EGNIAEMKTGEGKTLTATLPVYLNAL---------TGKGVHVVTVNEYLSSRDATEMGE 143 (796)
T ss_pred HhCC-CCchhHHHHHHHHh--cCCcccccCCCCCcHHHHHHHHHHHH---------cCCCeEEEeccHHHHHhhHHHHHH
Confidence 3677 57777776554444 44589999999999998888776665 577799999999999999999999
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCC-----CccCCCccEEEEehhhhhcccc-----
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLNDD----- 173 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~-----~~~~~~~~~iIiDE~H~~~~~~----- 173 (390)
+...+++.+.++.++.....+...+ .++|+++|...| ++++...- ....+.+.+.||||++.++=+.
T Consensus 144 ~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPL 221 (796)
T PRK12906 144 LYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPL 221 (796)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCce
Confidence 9888899999998887666554443 589999998766 33333321 1124568899999999321000
Q ss_pred -----------cHHHHHHHHH-----------------------------------------------------------
Q 016375 174 -----------FEKSLDEILN----------------------------------------------------------- 183 (390)
Q Consensus 174 -----------~~~~~~~~~~----------------------------------------------------------- 183 (390)
....+..+..
T Consensus 222 iisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i 301 (796)
T PRK12906 222 IISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHI 301 (796)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHH
Confidence 0000000000
Q ss_pred --hC-------------------------------------------------------------------CCCccEEEE
Q 016375 184 --VI-------------------------------------------------------------------PRMRQTYLF 194 (390)
Q Consensus 184 --~~-------------------------------------------------------------------~~~~~~i~~ 194 (390)
.+ ....++.+|
T Consensus 302 ~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~Gm 381 (796)
T PRK12906 302 DQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGM 381 (796)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhcc
Confidence 00 000137778
Q ss_pred eecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHh--hCCCceEEEecchhHHHHHHHH
Q 016375 195 SATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALM 272 (390)
Q Consensus 195 saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~ 272 (390)
|+|.......+...+- -.... .+...+....-.....+.....+...+...+.. ..+.++||||+++..++.+++.
T Consensus 382 TGTa~~e~~Ef~~iY~-l~vv~-IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 382 TGTAKTEEEEFREIYN-MEVIT-IPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred CCCCHHHHHHHHHHhC-CCEEE-cCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 8887655554544332 22222 222222211111222333444455566666643 3789999999999999999999
Q ss_pred HHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCC---CCC-----EEEEecCCCCcchhhhccccc
Q 016375 273 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP---SVD-----MVINYDIPTNSKDYIHRVGRT 344 (390)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~---~~~-----~vi~~~~~~~~~~~~Q~~GR~ 344 (390)
|.+.++++..+|+.+...++..+.+.++.|. |+|||+++++|.|++ ++. +||.++.|.|...+.|+.||+
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 9999999999999998888777777777776 899999999999994 788 999999999999999999999
Q ss_pred cCCCCcceEEEEeccccH
Q 016375 345 ARAGRTGVAISLVNQYEL 362 (390)
Q Consensus 345 ~R~~~~~~~i~~~~~~~~ 362 (390)
||.|.+|.+..|++.++.
T Consensus 538 GRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 538 GRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred ccCCCCcceEEEEeccch
Confidence 999999999999987653
No 95
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=5.9e-28 Score=221.27 Aligned_cols=324 Identities=20% Similarity=0.225 Sum_probs=230.8
Q ss_pred HhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHH
Q 016375 24 ENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (390)
Q Consensus 24 ~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 103 (390)
...+| ++-.+|++|+-++.+|.++++.|+|.+|||+++-.++... .. ++-++++.+|-++|.+|-+++|+
T Consensus 292 ~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~--------h~TR~iYTSPIKALSNQKfRDFk 361 (1248)
T KOG0947|consen 292 LIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QK--------HMTRTIYTSPIKALSNQKFRDFK 361 (1248)
T ss_pred hhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-Hh--------hccceEecchhhhhccchHHHHH
Confidence 34688 7999999999999999999999999999999876544322 22 56679999999999999999998
Q ss_pred HhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHH
Q 016375 104 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183 (390)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~ 183 (390)
....+.+ .++|+....+ ++..+|+|.+.|.+.+-++.. -.+++..||+||+|.+.+..-+-.+.+++=
T Consensus 362 ~tF~Dvg----LlTGDvqinP-------eAsCLIMTTEILRsMLYrgad-liRDvE~VIFDEVHYiND~eRGvVWEEViI 429 (1248)
T KOG0947|consen 362 ETFGDVG----LLTGDVQINP-------EASCLIMTTEILRSMLYRGAD-LIRDVEFVIFDEVHYINDVERGVVWEEVII 429 (1248)
T ss_pred Hhccccc----eeecceeeCC-------CcceEeehHHHHHHHHhcccc-hhhccceEEEeeeeecccccccccceeeee
Confidence 7654433 6777765443 478999999999998887653 268899999999997777777788899999
Q ss_pred hCCCCccEEEEeecCchhHHHHHHHh-cCCC-eEEecCCcccc-----------------------ccccc---------
Q 016375 184 VIPRMRQTYLFSATMTKKVKKLQRAC-LKNP-VKIEAASKYST-----------------------VDTLK--------- 229 (390)
Q Consensus 184 ~~~~~~~~i~~saT~~~~~~~~~~~~-~~~~-~~~~~~~~~~~-----------------------~~~~~--------- 229 (390)
-+|++.++|++|||.++..+-.-+.. .+.. +.+......+. ...+.
T Consensus 430 MlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ 509 (1248)
T KOG0947|consen 430 MLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKE 509 (1248)
T ss_pred eccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccc
Confidence 99999999999999887554322211 0000 00000000000 00000
Q ss_pred -----------------------eeEEe------cC--CCcc---hhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHh
Q 016375 230 -----------------------QQYRF------VP--AKYK---DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRN 275 (390)
Q Consensus 230 -----------------------~~~~~------~~--~~~~---~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~ 275 (390)
..+.. .+ ...+ -..+...++...--|++|||-+++.+++.+++|..
T Consensus 510 ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~ 589 (1248)
T KOG0947|consen 510 AKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTN 589 (1248)
T ss_pred ccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhc
Confidence 00000 00 0111 12334444555667899999999999999999975
Q ss_pred cCCc---------------------------------------eeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCC
Q 016375 276 LGQR---------------------------------------AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRG 316 (390)
Q Consensus 276 ~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G 316 (390)
.+.. +.+.|++.-+--++-+...|+.|-++||+||..+.+|
T Consensus 590 ~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMG 669 (1248)
T KOG0947|consen 590 LNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMG 669 (1248)
T ss_pred cCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhh
Confidence 4221 6678888888888888889999999999999999999
Q ss_pred CCCCCCCEEEEecCC---------CCcchhhhccccccCCC--CcceEEEEeccccHHHHHHHHHH
Q 016375 317 LDIPSVDMVINYDIP---------TNSKDYIHRVGRTARAG--RTGVAISLVNQYELEWYLQIEKL 371 (390)
Q Consensus 317 ~d~~~~~~vi~~~~~---------~~~~~~~Q~~GR~~R~~--~~~~~i~~~~~~~~~~~~~~~~~ 371 (390)
+|.|. ++||+.+.. ..+.+|.|+.|||||.| ..|+++++.... ..-...+++.
T Consensus 670 VNMPA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l~~l 733 (1248)
T KOG0947|consen 670 VNMPA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATLKRL 733 (1248)
T ss_pred cCCCc-eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHHhhH
Confidence 99964 666655432 57889999999999998 447777776554 3334444443
No 96
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.96 E-value=4.2e-28 Score=227.65 Aligned_cols=332 Identities=20% Similarity=0.246 Sum_probs=233.8
Q ss_pred CCCchHHHhhHHhHh----cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 29 KTPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+||+||.+.++++. +++++|++..+|.|||+.... .+..+....+ ..+..|+|+|...+ ..|.+++..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~-fl~~l~~~~~-----~~gpflvvvplst~-~~W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTIT-FLSYLFHSLQ-----IHGPFLVVVPLSTI-TAWEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHH-HHHHHHHhhh-----ccCCeEEEeehhhh-HHHHHHHHH
Confidence 579999999999886 578999999999999977644 3333333221 33447999998665 779999999
Q ss_pred hccCCCceEEEEecCCchHHHHHhc----CC-----CCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccH
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLAL----GK-----RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE 175 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~ 175 (390)
|. ++++.+++|..........+ .. ..+++++|++.++..-..... -.+.+++|||||++-+.. .
T Consensus 442 w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~---i~w~~~~vDeahrLkN~~-~ 514 (1373)
T KOG0384|consen 442 WT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSK---IPWRYLLVDEAHRLKNDE-S 514 (1373)
T ss_pred Hh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhcc---CCcceeeecHHhhcCchH-H
Confidence 97 48899999998776554432 11 578999999998765443222 237899999999876543 2
Q ss_pred HHHHHHHHhCCCCccEEEEeecCchh-HHHHHHH----------------------------------------------
Q 016375 176 KSLDEILNVIPRMRQTYLFSATMTKK-VKKLQRA---------------------------------------------- 208 (390)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~saT~~~~-~~~~~~~---------------------------------------------- 208 (390)
..+.. +..+... +.+++|+||..+ ++++...
T Consensus 515 ~l~~~-l~~f~~~-~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdv 592 (1373)
T KOG0384|consen 515 KLYES-LNQFKMN-HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDV 592 (1373)
T ss_pred HHHHH-HHHhccc-ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhh
Confidence 23333 4444332 368889997542 2222211
Q ss_pred -------------------------------------------------------hcCCCeEEecCCccccccccc----
Q 016375 209 -------------------------------------------------------CLKNPVKIEAASKYSTVDTLK---- 229 (390)
Q Consensus 209 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~---- 229 (390)
.++.|+.+....+. ......
T Consensus 593 ekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~-~~~~~~~~~~ 671 (1373)
T KOG0384|consen 593 EKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEK-ILGDFRDKMR 671 (1373)
T ss_pred ccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHH-HHHhhhhcch
Confidence 11111111111000 000000
Q ss_pred --eeEEecCCCcchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhcc---C
Q 016375 230 --QQYRFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA---G 302 (390)
Q Consensus 230 --~~~~~~~~~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~---~ 302 (390)
.....+....+..++..++... .++++|||.+.++....|++||...+++...++|.+...-|.+.++.|++ .
T Consensus 672 d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~Sd 751 (1373)
T KOG0384|consen 672 DEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSD 751 (1373)
T ss_pred HHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCC
Confidence 0000111233444445555443 57899999999999999999999999999999999999999999999987 4
Q ss_pred CccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcc--eEEEEecccc--HHHHHHHHHHhCCcce
Q 016375 303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTG--VAISLVNQYE--LEWYLQIEKLIGMLYI 377 (390)
Q Consensus 303 ~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~--~~i~~~~~~~--~~~~~~~~~~~~~~~~ 377 (390)
++.+|++|.+.+-|+|+..+++||+||..|+|..-+|+..||+|.|++. .++-+++.+. .+.+....++.+....
T Consensus 752 dFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~a 830 (1373)
T KOG0384|consen 752 DFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHA 830 (1373)
T ss_pred ceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHH
Confidence 6778999999999999999999999999999999999999999999774 6678887654 5677777777666543
No 97
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=5.4e-28 Score=216.40 Aligned_cols=311 Identities=19% Similarity=0.220 Sum_probs=227.6
Q ss_pred cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.+| .|-|+|..++.-+-+++++++.|+|.+|||.++-.++...+. ...+|++.+|-++|.+|-++++..-
T Consensus 126 YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr---------~kQRVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 126 YPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR---------EKQRVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred CCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH---------hcCeEEeeChhhhhcchhHHHHHHH
Confidence 456 589999999999999999999999999999998776666654 4667999999999999999988765
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhC
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~ 185 (390)
.. .+...+|+....+ .+..+|+|.+.|.+.+-++... ++.+.-||+||+|.|-+..-+-.+.+..-.+
T Consensus 196 F~----DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEv-mrEVaWVIFDEIHYMRDkERGVVWEETIIll 263 (1041)
T KOG0948|consen 196 FK----DVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEV-MREVAWVIFDEIHYMRDKERGVVWEETIILL 263 (1041)
T ss_pred hc----ccceeecceeeCC-------CCceeeeHHHHHHHHHhccchH-hheeeeEEeeeehhccccccceeeeeeEEec
Confidence 43 4455566655433 4689999999999988876533 7888899999999888887777788877888
Q ss_pred CCCccEEEEeecCchhHHHHHHH--hcCCCeEEecCCccc-ccccc------ceeEEecC--------------------
Q 016375 186 PRMRQTYLFSATMTKKVKKLQRA--CLKNPVKIEAASKYS-TVDTL------KQQYRFVP-------------------- 236 (390)
Q Consensus 186 ~~~~~~i~~saT~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~-------------------- 236 (390)
|++.+.+++|||.++..+...+. ....|-.+.+..-.+ ..+.. ...+..+.
T Consensus 264 P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 264 PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhcc
Confidence 99999999999999866543222 222222221111110 00000 00111111
Q ss_pred -----------------------CCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCc--------------
Q 016375 237 -----------------------AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR-------------- 279 (390)
Q Consensus 237 -----------------------~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-------------- 279 (390)
.......+...+....-.++|||+-++++++.++-.+.+.+.+
T Consensus 344 ~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 344 GESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNN 423 (1041)
T ss_pred CCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHH
Confidence 1112223444445556789999999999999999877654222
Q ss_pred -------------------------eeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCC---
Q 016375 280 -------------------------AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP--- 331 (390)
Q Consensus 280 -------------------------~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~--- 331 (390)
+.+.|++.-+--++-+.=.|++|-+++|.||...+.|+|.|. ++|++...-
T Consensus 424 Ai~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA-kTVvFT~~rKfD 502 (1041)
T KOG0948|consen 424 AIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA-KTVVFTAVRKFD 502 (1041)
T ss_pred HHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc-eeEEEeeccccC
Confidence 677888888888777777899999999999999999999965 555554332
Q ss_pred ------CCcchhhhccccccCCCCc--ceEEEEecc
Q 016375 332 ------TNSKDYIHRVGRTARAGRT--GVAISLVNQ 359 (390)
Q Consensus 332 ------~~~~~~~Q~~GR~~R~~~~--~~~i~~~~~ 359 (390)
.+..+|+|+.|||||.|.+ |.||+++++
T Consensus 503 G~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 503 GKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred CcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 3667999999999999954 888888875
No 98
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=200.87 Aligned_cols=275 Identities=32% Similarity=0.494 Sum_probs=205.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHhcc---CCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCcc
Q 016375 83 FFACVLSPTRELAIQISEQFEALGS---GISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLK 159 (390)
Q Consensus 83 ~~~lil~P~~~l~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~ 159 (390)
+.++|+-|+++|++|....++++-. ...++...+.|+.....+.....+..+|+|+||..+...+.... ..+....
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~-~~lt~cr 365 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGL-VTLTHCR 365 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccc-eeeeeeE
Confidence 3488999999999998886655533 33455556777777777777788899999999999999887755 5678899
Q ss_pred EEEEehhhhhcccccHHHHHHHHHhCCC------CccEEEEeecCch-hHHHHHHHhcCCCeEEecCCccccccccceeE
Q 016375 160 YLVLDEADRLLNDDFEKSLDEILNVIPR------MRQTYLFSATMTK-KVKKLQRACLKNPVKIEAASKYSTVDTLKQQY 232 (390)
Q Consensus 160 ~iIiDE~H~~~~~~~~~~~~~~~~~~~~------~~~~i~~saT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (390)
++++||++-++...+.+.+.++...++. ..|.+.+|||... .+..+.+..+.-|..+....+........+..
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9999999988888888888888777754 3588999999754 22233333433343333333332222222211
Q ss_pred EecC------------------------------CCcch---------hHHHHHHHhhCCCceEEEecchhHHHHHHHHH
Q 016375 233 RFVP------------------------------AKYKD---------CYLVYILTEVSASSTMVFTRTCDATRLLALML 273 (390)
Q Consensus 233 ~~~~------------------------------~~~~~---------~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l 273 (390)
..+. ....- +.-...++++.-.++|+||.++..++.+.+++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHH
Confidence 1110 00001 11122334556678999999999999999999
Q ss_pred HhcCC---ceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCc
Q 016375 274 RNLGQ---RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRT 350 (390)
Q Consensus 274 ~~~~~---~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~ 350 (390)
...|- .+.-+|++..+.+|.+-++.|+.++.++||+|+.+.+|+|+.++-.+|.+..|-+..+|..|+||+||...-
T Consensus 526 ~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraerm 605 (725)
T KOG0349|consen 526 NQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERM 605 (725)
T ss_pred HHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhc
Confidence 98754 578899999999999999999999999999999999999999999999999999999999999999998666
Q ss_pred ceEEEEec
Q 016375 351 GVAISLVN 358 (390)
Q Consensus 351 ~~~i~~~~ 358 (390)
|.+|.++.
T Consensus 606 glaislva 613 (725)
T KOG0349|consen 606 GLAISLVA 613 (725)
T ss_pred ceeEEEee
Confidence 77666664
No 99
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.1e-25 Score=210.91 Aligned_cols=146 Identities=18% Similarity=0.243 Sum_probs=120.8
Q ss_pred cCCCCHHHHHHHH-----hcCCCCC---chHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCc
Q 016375 12 ELGLRDELVEACE-----NVGWKTP---SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (390)
Q Consensus 12 ~~~~~~~~~~~l~-----~~g~~~~---~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 83 (390)
.+.+..+..+.+. .+|+..| +|+|.++++.+..+++.+..++||+|||+++++|++..++. +.
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g~ 136 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------GK 136 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------cC
Confidence 3445555555444 4688887 99999999999999999999999999999999999987753 22
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCCCccC-------
Q 016375 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKGFSL------- 155 (390)
Q Consensus 84 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~~~~~------- 155 (390)
.++|++|++.|+.|.++.+..+...+++.+..+.|+.+...+.... .++|+|+||..| ++++.... +.+
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~-~~~~~~~~vq 213 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNS-IATRKEEQVG 213 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCC-CCcCHHHhhc
Confidence 3889999999999999999999888889999999998887776554 589999999999 88887653 333
Q ss_pred CCccEEEEehhhhh
Q 016375 156 GTLKYLVLDEADRL 169 (390)
Q Consensus 156 ~~~~~iIiDE~H~~ 169 (390)
+.+.++|||||+.+
T Consensus 214 r~~~~~IIDEADsm 227 (970)
T PRK12899 214 RGFYFAIIDEVDSI 227 (970)
T ss_pred ccccEEEEechhhh
Confidence 35689999999954
No 100
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=2.6e-26 Score=215.69 Aligned_cols=335 Identities=21% Similarity=0.263 Sum_probs=237.0
Q ss_pred CCCCCchHHHhhHHhHhcC-CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCC--CCCCceEEEEcCCHHHHHHHHHHHH
Q 016375 27 GWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQR--TVPAFFACVLSPTRELAIQISEQFE 103 (390)
Q Consensus 27 g~~~~~~~Q~~~~~~i~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~--~~~~~~~lil~P~~~l~~q~~~~~~ 103 (390)
|..++.+.|....+....+ .+.+++||||+|||..+++.+++.+-.+..... .....++.+++|..+|++.|...+.
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 6667999999999888875 589999999999999999989888876544222 1345589999999999999999999
Q ss_pred HhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCC-ccCCCccEEEEehhhhhcccccHHHHHHHH
Q 016375 104 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182 (390)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~-~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~ 182 (390)
+.....++.|...+|+........ ..+.|+++||++.--.-+.... ...+-++++|+||.| +..++-+..+..+.
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH-LLhDdRGpvLESIV 461 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH-LLHDDRGPVLESIV 461 (1674)
T ss_pred hhccccCcEEEEecccccchhhhh---hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh-hcccccchHHHHHH
Confidence 988899999999999976543322 3578999999987443333221 124567899999999 55444455554443
Q ss_pred HhC-------CCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcch--------hHHHHH
Q 016375 183 NVI-------PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD--------CYLVYI 247 (390)
Q Consensus 183 ~~~-------~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 247 (390)
.+. ...++++++|||+++..+.-.-.....+..+..... .....+.+.+..+...... ....++
T Consensus 462 aRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~s-yRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKV 540 (1674)
T KOG0951|consen 462 ARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSS-YRPVPLKQQYIGITEKKPLKRFQAMNEACYEKV 540 (1674)
T ss_pred HHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcc-cCcCCccceEeccccCCchHHHHHHHHHHHHHH
Confidence 322 335679999999998655322222222222222222 2222344444444332222 223455
Q ss_pred HHhhCCCceEEEecchhHHHHHHHHHHhc-------------------------------------CCceeeccCCCCHH
Q 016375 248 LTEVSASSTMVFTRTCDATRLLALMLRNL-------------------------------------GQRAIPISGHMSQS 290 (390)
Q Consensus 248 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~~~ 290 (390)
+.+...+++|||+.+++++.+.++.++.. ...+.+.|.+++..
T Consensus 541 m~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~ 620 (1674)
T KOG0951|consen 541 LEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRK 620 (1674)
T ss_pred HHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcc
Confidence 66667799999999998887777666520 12367889999999
Q ss_pred HHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEec-----C------CCCcchhhhccccccCCCC--cceEEEEe
Q 016375 291 KRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD-----I------PTNSKDYIHRVGRTARAGR--TGVAISLV 357 (390)
Q Consensus 291 ~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~-----~------~~~~~~~~Q~~GR~~R~~~--~~~~i~~~ 357 (390)
+|....+.|.+|.++++++|..+..|+|+|. +.||+=+ + +.++.+..|++||+||.+. .|..++..
T Consensus 621 dR~~~EdLf~~g~iqvlvstatlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit 699 (1674)
T KOG0951|consen 621 DRELVEDLFADGHIQVLVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIIT 699 (1674)
T ss_pred hHHHHHHHHhcCceeEEEeehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeecc
Confidence 9999999999999999999999999999975 5555432 2 3577789999999999864 36667666
Q ss_pred ccccHHHHHH
Q 016375 358 NQYELEWYLQ 367 (390)
Q Consensus 358 ~~~~~~~~~~ 367 (390)
+..+.-....
T Consensus 700 ~~se~qyyls 709 (1674)
T KOG0951|consen 700 DHSELQYYLS 709 (1674)
T ss_pred CchHhhhhHH
Confidence 6666554444
No 101
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=3.9e-26 Score=216.61 Aligned_cols=320 Identities=18% Similarity=0.194 Sum_probs=230.4
Q ss_pred HHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHH
Q 016375 21 EACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 100 (390)
Q Consensus 21 ~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 100 (390)
..-...|| +|-++|++++..+.+++++++++|||+|||+++-.++...+. .+.++++.+|.++|.+|-++
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~---------~~qrviYTsPIKALsNQKyr 180 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR---------DGQRVIYTSPIKALSNQKYR 180 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH---------cCCceEeccchhhhhhhHHH
Confidence 34456899 799999999999999999999999999999998776665554 45569999999999999998
Q ss_pred HHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHH
Q 016375 101 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDE 180 (390)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~ 180 (390)
++.....+..-.+...+|+.... ..+.++|+|.+.|.+.+.++. ..+..+..||+||+|.+.+..-+-.+.+
T Consensus 181 dl~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~-~~~~~i~~ViFDEvHyi~D~eRG~VWEE 252 (1041)
T COG4581 181 DLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGS-ESLRDIEWVVFDEVHYIGDRERGVVWEE 252 (1041)
T ss_pred HHHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCc-ccccccceEEEEeeeeccccccchhHHH
Confidence 88664332222345566665543 347899999999999888763 5688999999999998888888889999
Q ss_pred HHHhCCCCccEEEEeecCchhHHHHHHHh--cCCCeEEecCCcccccccc-----ceeEEecCC----------------
Q 016375 181 ILNVIPRMRQTYLFSATMTKKVKKLQRAC--LKNPVKIEAASKYSTVDTL-----KQQYRFVPA---------------- 237 (390)
Q Consensus 181 ~~~~~~~~~~~i~~saT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---------------- 237 (390)
+.-.+|...+++++|||.++..+-..+.. -..+..+.+....+.+-.. ...+..+..
T Consensus 253 ~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l 332 (1041)
T COG4581 253 VIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSL 332 (1041)
T ss_pred HHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhh
Confidence 99999999999999999988655433322 1222211111111100000 000000000
Q ss_pred -------------------------------CcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhc----------
Q 016375 238 -------------------------------KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL---------- 276 (390)
Q Consensus 238 -------------------------------~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------- 276 (390)
......+...+...+..++++|+-+++.++..+..+...
T Consensus 333 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~ 412 (1041)
T COG4581 333 SCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKER 412 (1041)
T ss_pred hccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHH
Confidence 001122344444556678999999999998888776521
Q ss_pred ------------------CCc-------------eeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEE
Q 016375 277 ------------------GQR-------------AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV 325 (390)
Q Consensus 277 ------------------~~~-------------~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~v 325 (390)
+++ ..+.|+++=+..+..+...|+.|-.+|+++|..++.|+|.|- ++|
T Consensus 413 ~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rtv 491 (1041)
T COG4581 413 AIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA-RTV 491 (1041)
T ss_pred HHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc-cce
Confidence 111 346788888999999999999999999999999999999965 555
Q ss_pred EEecC---------CCCcchhhhccccccCCCCc--ceEEEEecc
Q 016375 326 INYDI---------PTNSKDYIHRVGRTARAGRT--GVAISLVNQ 359 (390)
Q Consensus 326 i~~~~---------~~~~~~~~Q~~GR~~R~~~~--~~~i~~~~~ 359 (390)
++... ..++.+|.|..||+||.|-+ |.+|+...+
T Consensus 492 v~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 492 VFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred eeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 54432 36788999999999999965 677777444
No 102
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.5e-25 Score=209.51 Aligned_cols=319 Identities=18% Similarity=0.189 Sum_probs=225.9
Q ss_pred cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
+|+ .+++.|. +..+.-++.-+..++||.|||+++.+|++..++ .++.|.|++|+..|+.+-++.+..+
T Consensus 79 lgm-~~ydVQl--iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al---------~g~~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 79 FEM-RHFDVQL--LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNAL---------TGKGVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred hCC-CcCchHH--hcchHhcCCccccccCCCCchHHHHHHHHHHHh---------cCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 455 4555555 444444567889999999999999999876665 3555999999999999999999998
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCCCcc-----CCCccEEEEehhhhhcccc------
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKGFS-----LGTLKYLVLDEADRLLNDD------ 173 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~~~~-----~~~~~~iIiDE~H~~~~~~------ 173 (390)
...+++.+.+..++.+..... ....++|+++|+..| ++++...-... .+.+.++||||++.++-+.
T Consensus 147 ~~~lGlsv~~i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLI 224 (908)
T PRK13107 147 FEFLGLTVGINVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLI 224 (908)
T ss_pred HHhcCCeEEEecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCcee
Confidence 888899999988887764433 334689999999999 77777652233 3678999999999432100
Q ss_pred ----------cH-------------------------------------------HHHHHHH------------------
Q 016375 174 ----------FE-------------------------------------------KSLDEIL------------------ 182 (390)
Q Consensus 174 ----------~~-------------------------------------------~~~~~~~------------------ 182 (390)
.. ..+...+
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~ 304 (908)
T PRK13107 225 ISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANI 304 (908)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhh
Confidence 00 0000111
Q ss_pred -------HhC-------------------------------------------------------------------CCC
Q 016375 183 -------NVI-------------------------------------------------------------------PRM 188 (390)
Q Consensus 183 -------~~~-------------------------------------------------------------------~~~ 188 (390)
+.+ ...
T Consensus 305 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (908)
T PRK13107 305 SLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQY 384 (908)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhh
Confidence 000 000
Q ss_pred ccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHH--hhCCCceEEEecchhHH
Q 016375 189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDAT 266 (390)
Q Consensus 189 ~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lvf~~~~~~~ 266 (390)
.++.+||+|......++.+.+--....+ +...+....-.....+.....+...+...+. +..+.++||||.++..+
T Consensus 385 ~kL~GMTGTa~te~~Ef~~iY~l~Vv~I--PTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~s 462 (908)
T PRK13107 385 EKLAGMTGTADTEAFEFQHIYGLDTVVV--PTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQS 462 (908)
T ss_pred hHhhcccCCChHHHHHHHHHhCCCEEEC--CCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHH
Confidence 1377778887765555555443332222 2222211111112222333334444444333 33789999999999999
Q ss_pred HHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC------------------------
Q 016375 267 RLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV------------------------ 322 (390)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~------------------------ 322 (390)
+.++..|...++++..+|+..+..++..+.+.|+.|. |+|||+++++|.|+.=-
T Consensus 463 e~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~ 540 (908)
T PRK13107 463 ELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKAD 540 (908)
T ss_pred HHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999998 89999999999998411
Q ss_pred -------------CEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccH
Q 016375 323 -------------DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (390)
Q Consensus 323 -------------~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~ 362 (390)
=+||....+.|..--.|..||+||+|.+|.+..|++-++.
T Consensus 541 ~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 541 WQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1677778888888889999999999999999999986654
No 103
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.95 E-value=3.3e-25 Score=205.51 Aligned_cols=288 Identities=23% Similarity=0.290 Sum_probs=197.6
Q ss_pred HHHHHHHh-cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHH
Q 016375 18 ELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (390)
Q Consensus 18 ~~~~~l~~-~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 96 (390)
++.+.++. .|+ .|+..|+-+...+..|+++-+.||||.|||...+...+ .+.. .++++++++||..|+.
T Consensus 70 ~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl-~~a~--------kgkr~yii~PT~~Lv~ 139 (1187)
T COG1110 70 EFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSL-YLAK--------KGKRVYIIVPTTTLVR 139 (1187)
T ss_pred HHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHH-HHHh--------cCCeEEEEecCHHHHH
Confidence 33445554 477 89999999999999999999999999999965432222 2222 6789999999999999
Q ss_pred HHHHHHHHhccCCC-ceEEE-EecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhc
Q 016375 97 QISEQFEALGSGIS-LRCAV-LVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 170 (390)
Q Consensus 97 q~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~ 170 (390)
|.++.++++....+ ..+.. +|+......+... ..++.||+|+|.+.|...+..-.. .+|++|++|.+|-+.
T Consensus 140 Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifVDDVDA~L 216 (1187)
T COG1110 140 QVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK---LKFDFIFVDDVDAIL 216 (1187)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEEccHHHHH
Confidence 99999999876444 32222 6666544443322 345799999999988776665332 459999999999544
Q ss_pred ccc-----------cH-----------------------HHHHHHHHh--------CCCCccEEEEeecCchhHH--HHH
Q 016375 171 NDD-----------FE-----------------------KSLDEILNV--------IPRMRQTYLFSATMTKKVK--KLQ 206 (390)
Q Consensus 171 ~~~-----------~~-----------------------~~~~~~~~~--------~~~~~~~i~~saT~~~~~~--~~~ 206 (390)
..+ |. ..+.+.... -.+..+++..|||..+.-. .+.
T Consensus 217 kaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~Lf 296 (1187)
T COG1110 217 KASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLF 296 (1187)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHH
Confidence 322 00 011111100 1233468999999876432 122
Q ss_pred HHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecc---hhHHHHHHHHHHhcCCceeec
Q 016375 207 RACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRT---CDATRLLALMLRNLGQRAIPI 283 (390)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~---~~~~~~l~~~l~~~~~~~~~~ 283 (390)
+..++ +..........++...+... .....+..+++... ...|||++. .+.+++++++|+++|+++..+
T Consensus 297 ReLlg----FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~ 368 (1187)
T COG1110 297 RELLG----FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGINAELI 368 (1187)
T ss_pred HHHhC----CccCccchhhhheeeeeccC---ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEe
Confidence 22221 12222222233333333322 44455566666544 478999999 999999999999999999988
Q ss_pred cCCCCHHHHHHHHHHhccCCccEEEEe----CCCCCCCCCCC-CCEEEEecCC
Q 016375 284 SGHMSQSKRLGALNKFKAGECNILICT----DVASRGLDIPS-VDMVINYDIP 331 (390)
Q Consensus 284 ~~~~~~~~~~~~~~~f~~~~~~ilv~t----~~~~~G~d~~~-~~~vi~~~~~ 331 (390)
++. .+..++.|..|++++||+. ..+-+|+|+|. ++.+|+++.|
T Consensus 369 ~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 369 HAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 874 3778999999999999986 48889999997 8899999987
No 104
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.95 E-value=4e-26 Score=208.19 Aligned_cols=297 Identities=21% Similarity=0.244 Sum_probs=195.2
Q ss_pred CCCCCchHHHhhHHhHhc----C-CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHH
Q 016375 27 GWKTPSKIQAEAIPHALE----G-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (390)
Q Consensus 27 g~~~~~~~Q~~~~~~i~~----~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 101 (390)
.-..+|+||..|+..+.+ + +..++++.||+|||.++ ++++..+.+.+ ..+++|+++.+++|+.|.+..
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~------~~KRVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG------WVKRVLFLADRNALVDQAYGA 234 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc------hhheeeEEechHHHHHHHHHH
Confidence 334589999999987764 3 35999999999999986 45666666544 577899999999999999988
Q ss_pred HHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcC-C---CccCCCccEEEEehhhhhcccccHHH
Q 016375 102 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT-K---GFSLGTLKYLVLDEADRLLNDDFEKS 177 (390)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~-~---~~~~~~~~~iIiDE~H~~~~~~~~~~ 177 (390)
+..+.... ....+..+... ...++|.++|++++....... . .+....|++|||||||+-....+...
T Consensus 235 f~~~~P~~--~~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I 305 (875)
T COG4096 235 FEDFLPFG--TKMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSI 305 (875)
T ss_pred HHHhCCCc--cceeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHH
Confidence 88876532 11111111111 114799999999998876654 1 23355699999999998877766655
Q ss_pred HHHHHHhCCCCccEEEEeecCchhHHHHHHHhc-CCCe------------------EEecCCccc----ccccc------
Q 016375 178 LDEILNVIPRMRQTYLFSATMTKKVKKLQRACL-KNPV------------------KIEAASKYS----TVDTL------ 228 (390)
Q Consensus 178 ~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~-~~~~------------------~~~~~~~~~----~~~~~------ 228 (390)
+..+-.. .+++||||....+...-.++ +.|. .+....... .....
T Consensus 306 ~dYFdA~------~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~ 379 (875)
T COG4096 306 LDYFDAA------TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKL 379 (875)
T ss_pred HHHHHHH------HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhh
Confidence 4444333 46669999775544333333 2221 111100000 00000
Q ss_pred --------ceeEEecC------CCcchhHHHHHHHhh-----C---CCceEEEecchhHHHHHHHHHHhcC-----Ccee
Q 016375 229 --------KQQYRFVP------AKYKDCYLVYILTEV-----S---ASSTMVFTRTCDATRLLALMLRNLG-----QRAI 281 (390)
Q Consensus 229 --------~~~~~~~~------~~~~~~~~~~~~~~~-----~---~~~~lvf~~~~~~~~~l~~~l~~~~-----~~~~ 281 (390)
.+.+...+ .......+...+.+. . -.|+||||.+..+|+.+.+.|.+.. .-+.
T Consensus 380 ~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~ 459 (875)
T COG4096 380 QGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAM 459 (875)
T ss_pred hccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEE
Confidence 00000000 111222233333221 1 3689999999999999999998753 3366
Q ss_pred eccCCCCHHHHHHHHHHhcc--CCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCC
Q 016375 282 PISGHMSQSKRLGALNKFKA--GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARA 347 (390)
Q Consensus 282 ~~~~~~~~~~~~~~~~~f~~--~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 347 (390)
.+.++....+ ..+..|.. ...+|.++..++.+|+|+|.|..++++....|...|.|++||+-|.
T Consensus 460 ~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 460 KITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred EEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 7777655443 34444443 4566888999999999999999999999999999999999999996
No 105
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=5.7e-25 Score=198.61 Aligned_cols=326 Identities=18% Similarity=0.167 Sum_probs=222.4
Q ss_pred CCchHHHhhHHhHhc----CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 30 TPSKIQAEAIPHALE----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~----~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.|++||++.+.++.+ +...|+...+|.|||...+ ..+..+....+ -.+++|||||. .+..||..++.+|
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~k-----~~~paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSGK-----LTKPALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhccc-----ccCceEEEccH-HHHHHHHHHHHHh
Confidence 479999999999874 5679999999999997643 33444433211 23679999995 7779999999999
Q ss_pred ccCCCceEEEEecCCchH--------HHHH-----hcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccc
Q 016375 106 GSGISLRCAVLVGGVDMM--------QQTL-----ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND 172 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~--------~~~~-----~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~ 172 (390)
... +++..+++..... ..+. .......|+|+|++.|.-.-.. +.-..++++|+||.|.+-+.
T Consensus 278 ~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~---l~~~~W~y~ILDEGH~IrNp 352 (923)
T KOG0387|consen 278 WPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDD---LLGILWDYVILDEGHRIRNP 352 (923)
T ss_pred Ccc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcc---cccccccEEEecCcccccCC
Confidence 865 7888888877631 1111 1223567999999887653221 22345899999999976554
Q ss_pred ccHHHHHHHHHhCCCCccEEEEeecCchh-HHHHHHH-------------------------------------------
Q 016375 173 DFEKSLDEILNVIPRMRQTYLFSATMTKK-VKKLQRA------------------------------------------- 208 (390)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~saT~~~~-~~~~~~~------------------------------------------- 208 (390)
. .....++.+.. . .+.|++|+||-.+ +.++...
T Consensus 353 n-s~islackki~-T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca 429 (923)
T KOG0387|consen 353 N-SKISLACKKIR-T-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCA 429 (923)
T ss_pred c-cHHHHHHHhcc-c-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHH
Confidence 3 33333333332 2 2357788885331 1111110
Q ss_pred ------------------------------------------------------------------------hcCCCeEE
Q 016375 209 ------------------------------------------------------------------------CLKNPVKI 216 (390)
Q Consensus 209 ------------------------------------------------------------------------~~~~~~~~ 216 (390)
.++.|..+
T Consensus 430 ~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll 509 (923)
T KOG0387|consen 430 VALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLL 509 (923)
T ss_pred HHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccc
Confidence 11111111
Q ss_pred ecCCccccccccceeEEecCCCcchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHH-hcCCceeeccCCCCHHHHH
Q 016375 217 EAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLR-NLGQRAIPISGHMSQSKRL 293 (390)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~ 293 (390)
....+. ........-......+...+..++..+ .+.++++|..++.....+...|. ..++.+..++|.++...|.
T Consensus 510 ~~~~~~--~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~ 587 (923)
T KOG0387|consen 510 DRRDED--EKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQ 587 (923)
T ss_pred cCcccc--cccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhh
Confidence 111000 000000001112344556666666655 57899999999999999999999 5899999999999999999
Q ss_pred HHHHHhccCC-cc-EEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcc--eEEEEeccccHHHHHHHH
Q 016375 294 GALNKFKAGE-CN-ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTG--VAISLVNQYELEWYLQIE 369 (390)
Q Consensus 294 ~~~~~f~~~~-~~-ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~--~~i~~~~~~~~~~~~~~~ 369 (390)
.+++.|+++. .. +|++|.+.+-|+|+.+++.||+||+.|+|..-.|+.-|++|.|++. .++-+++....+-...-+
T Consensus 588 ~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~r 667 (923)
T KOG0387|consen 588 KLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHR 667 (923)
T ss_pred HHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHH
Confidence 9999999765 33 5778899999999999999999999999999999999999999764 566677877776655444
Q ss_pred HHh
Q 016375 370 KLI 372 (390)
Q Consensus 370 ~~~ 372 (390)
+.+
T Consensus 668 QI~ 670 (923)
T KOG0387|consen 668 QIF 670 (923)
T ss_pred HHH
Confidence 444
No 106
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.94 E-value=7.8e-25 Score=207.78 Aligned_cols=310 Identities=18% Similarity=0.186 Sum_probs=185.8
Q ss_pred CchHHHhhHHhHhc----------CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHH
Q 016375 31 PSKIQAEAIPHALE----------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 100 (390)
Q Consensus 31 ~~~~Q~~~~~~i~~----------~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 100 (390)
++++|..++..+.. .+..+++++||||||++++..+. .+.+. ...+++|+++|+..|..||.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~-~l~~~------~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAAR-KALEL------LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHH-HHHhh------cCCCeEEEEECcHHHHHHHHH
Confidence 79999999987642 24799999999999988765443 33321 156789999999999999999
Q ss_pred HHHHhccCCCceEEEEecCCchHHHHHh-cCCCCCEEEeCCchhHHHhhcC-CCccCCCc-cEEEEehhhhhcccccHHH
Q 016375 101 QFEALGSGISLRCAVLVGGVDMMQQTLA-LGKRPHIVVATPGRLMDHLTNT-KGFSLGTL-KYLVLDEADRLLNDDFEKS 177 (390)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~t~~~l~~~~~~~-~~~~~~~~-~~iIiDE~H~~~~~~~~~~ 177 (390)
.+..++.... ....+....... ......|+|+|.++|.+.+... ..+..... .+||+||||+.....+...
T Consensus 312 ~f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~ 385 (667)
T TIGR00348 312 EFQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKN 385 (667)
T ss_pred HHHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHH
Confidence 9998864211 111111111111 2234789999999998644321 11121122 3899999998765554433
Q ss_pred HHHHHHhCCCCccEEEEeecCchhHHHHHHHhcC---CCeEEecCCccccccccceeE--Ee------------------
Q 016375 178 LDEILNVIPRMRQTYLFSATMTKKVKKLQRACLK---NPVKIEAASKYSTVDTLKQQY--RF------------------ 234 (390)
Q Consensus 178 ~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~------------------ 234 (390)
+. ..+++ ...+++||||...........+. ......+....+..+.....+ ..
T Consensus 386 l~---~~~p~-a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 386 LK---KALKN-ASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HH---hhCCC-CcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 33 34444 35999999996431111111111 111111111111111110000 00
Q ss_pred ----cCCC-----------------------cchhHH-HHHHHh------hCCCceEEEecchhHHHHHHHHHHhc----
Q 016375 235 ----VPAK-----------------------YKDCYL-VYILTE------VSASSTMVFTRTCDATRLLALMLRNL---- 276 (390)
Q Consensus 235 ----~~~~-----------------------~~~~~~-~~~~~~------~~~~~~lvf~~~~~~~~~l~~~l~~~---- 276 (390)
.+.. ...... ..++.+ ....+++|+|.++..|..+.+.|.+.
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 0000 000000 011111 12489999999999999999888664
Q ss_pred -CCceeeccCCCCHH---------------------HHHHHHHHhcc-CCccEEEEeCCCCCCCCCCCCCEEEEecCCCC
Q 016375 277 -GQRAIPISGHMSQS---------------------KRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTN 333 (390)
Q Consensus 277 -~~~~~~~~~~~~~~---------------------~~~~~~~~f~~-~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~ 333 (390)
+....++++..+.. ...+++++|.+ +..+|+|.++++.+|+|.|.+.++++..+..+
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~ 621 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY 621 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc
Confidence 23345555543222 22467888876 68899999999999999999999998777665
Q ss_pred cchhhhccccccCC-C--Cc-ceEEEEec
Q 016375 334 SKDYIHRVGRTARA-G--RT-GVAISLVN 358 (390)
Q Consensus 334 ~~~~~Q~~GR~~R~-~--~~-~~~i~~~~ 358 (390)
. .++|++||+.|. . ++ |.++.|+.
T Consensus 622 h-~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 622 H-GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred c-HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 4 589999999994 3 22 44555544
No 107
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=1.3e-25 Score=179.48 Aligned_cols=165 Identities=36% Similarity=0.486 Sum_probs=137.8
Q ss_pred chHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCc
Q 016375 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISL 111 (390)
Q Consensus 32 ~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 111 (390)
+|+|.++++.+.+++++++.+|||+|||.+++.+++..+.+. ...++++++|+++|++|..+.+..+....+.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-------KDARVLIIVPTRALAEQQFERLRKFFSNTNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-------CCceEEEEeeccccccccccccccccccccc
Confidence 589999999999999999999999999999999999887663 1237999999999999999999999887778
Q ss_pred eEEEEecCCchH-HHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCC--C
Q 016375 112 RCAVLVGGVDMM-QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR--M 188 (390)
Q Consensus 112 ~~~~~~~~~~~~-~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~--~ 188 (390)
++..++++.... ........+++|+|+||++|...+..... ++.++++||+||+|.+....+...+..+...+.+ .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~ 152 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKN 152 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTT
T ss_pred ccccccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCCC
Confidence 889998888755 33333445799999999999999887543 6667999999999988887777788888887743 4
Q ss_pred ccEEEEeecCchhHHH
Q 016375 189 RQTYLFSATMTKKVKK 204 (390)
Q Consensus 189 ~~~i~~saT~~~~~~~ 204 (390)
.+++++|||+++.++.
T Consensus 153 ~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 153 IQIILLSATLPSNVEK 168 (169)
T ss_dssp SEEEEEESSSTHHHHH
T ss_pred CcEEEEeeCCChhHhh
Confidence 7899999999965543
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=2.9e-25 Score=212.86 Aligned_cols=327 Identities=19% Similarity=0.159 Sum_probs=210.3
Q ss_pred CCchHHHhhHHhHhcC---C-CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 30 TPSKIQAEAIPHALEG---K-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~---~-~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
..++.|..++..+... + .+++.+|||+|||.+++.++...+... . ....+++++.|++++.++.++.++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~----~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-I----KLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-c----cccceEEEEccHHHHHHHHHHHHHhh
Confidence 4589999999888753 4 789999999999999888887776653 1 14667999999999999999999987
Q ss_pred ccCCCceEEEEecCCchHHHHHhc--------------CCCCCEEEeCCchhHHHhhcCCCcc-C--CCccEEEEehhhh
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLAL--------------GKRPHIVVATPGRLMDHLTNTKGFS-L--GTLKYLVLDEADR 168 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~i~t~~~l~~~~~~~~~~~-~--~~~~~iIiDE~H~ 168 (390)
...........++........... ..-..+.++|+.+..........+. + -..+++|+||+|.
T Consensus 270 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 270 FGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred hcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 654333322123333222111110 0012233444444433211111111 1 1237899999996
Q ss_pred hcccccHHHHHHHHHhCC-CCccEEEEeecCchhHHHHHHHhcCCCeEEecCCc-cc--cccccceeE-EecCCCcchhH
Q 016375 169 LLNDDFEKSLDEILNVIP-RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK-YS--TVDTLKQQY-RFVPAKYKDCY 243 (390)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~-~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~-~~~~~~~~~~~ 243 (390)
+........+.++...+. ....+++||||+++..................... .. ......... ...........
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 666523334444444333 34569999999999998877776655443333211 00 011111100 00000000011
Q ss_pred HHHHH-HhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhc----cCCccEEEEeCCCCCCCC
Q 016375 244 LVYIL-TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK----AGECNILICTDVASRGLD 318 (390)
Q Consensus 244 ~~~~~-~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~----~~~~~ilv~t~~~~~G~d 318 (390)
..... .-..+.+++|.||++..|.++++.|+..+.++..+||.+...+|.+.++.+. .+...|+|+|+.++.|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 11111 1225789999999999999999999998778999999999999998888554 467889999999999999
Q ss_pred CCCCCEEEEecCCCCcchhhhccccccCCC--CcceEEEEeccccHHH
Q 016375 319 IPSVDMVINYDIPTNSKDYIHRVGRTARAG--RTGVAISLVNQYELEW 364 (390)
Q Consensus 319 ~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~--~~~~~i~~~~~~~~~~ 364 (390)
+ +.+.+|.- +...++.+||+||++|.| .++.++++........
T Consensus 510 i-dfd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~ 554 (733)
T COG1203 510 I-DFDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPY 554 (733)
T ss_pred c-ccCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCc
Confidence 9 67888654 345667999999999999 5677777776544433
No 109
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.6e-24 Score=204.40 Aligned_cols=311 Identities=21% Similarity=0.264 Sum_probs=217.2
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH-hccC
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSG 108 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~ 108 (390)
..+....+++..+.+++.++|.++||+|||......+++.-. ..+..+.+.-|++--+...++.+.+ ++..
T Consensus 50 Pv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 50 PVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCC
Confidence 457788889999999999999999999999775554554433 1456788999999878888877755 4433
Q ss_pred CCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhc-ccccH-HHHHHHHHhCC
Q 016375 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL-NDDFE-KSLDEILNVIP 186 (390)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~-~~~~~-~~~~~~~~~~~ 186 (390)
.+..|....-. .......+.|-++|.+.|++.+..+. .++.+++||+||+|+=+ +.++. -.+..++...+
T Consensus 122 ~G~~VGY~iRf------e~~~s~~Trik~mTdGiLlrei~~D~--~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr 193 (845)
T COG1643 122 LGETVGYSIRF------ESKVSPRTRIKVMTDGILLREIQNDP--LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR 193 (845)
T ss_pred cCceeeEEEEe------eccCCCCceeEEeccHHHHHHHhhCc--ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC
Confidence 33333221111 11123457899999999999998765 48899999999999532 22222 23334455566
Q ss_pred CCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecC-CCc-chhHHHHHHH---hhCCCceEEEec
Q 016375 187 RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKY-KDCYLVYILT---EVSASSTMVFTR 261 (390)
Q Consensus 187 ~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~---~~~~~~~lvf~~ 261 (390)
..-++|.||||... +.+...+.+.|........++. ...|.... ... ....+...+. ....+.++||.+
T Consensus 194 ~DLKiIimSATld~--~rfs~~f~~apvi~i~GR~fPV----ei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLp 267 (845)
T COG1643 194 DDLKLIIMSATLDA--ERFSAYFGNAPVIEIEGRTYPV----EIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLP 267 (845)
T ss_pred CCceEEEEecccCH--HHHHHHcCCCCEEEecCCccce----EEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECC
Confidence 55679999999876 4444444334444333333322 12221111 122 2222222222 225678999999
Q ss_pred chhHHHHHHHHHHh----cCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCC------
Q 016375 262 TCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP------ 331 (390)
Q Consensus 262 ~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~------ 331 (390)
..++.+..++.|.+ ....+.++++.++..++..+++--..|..+|+++|+++++++.+++++.||.-+..
T Consensus 268 G~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~ 347 (845)
T COG1643 268 GQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYD 347 (845)
T ss_pred cHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccc
Confidence 99999999999998 34678999999999999998777666767799999999999999999999975542
Q ss_pred ------------CCcchhhhccccccCCCCcceEEEEeccccHH
Q 016375 332 ------------TNSKDYIHRVGRTARAGRTGVAISLVNQYELE 363 (390)
Q Consensus 332 ------------~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~ 363 (390)
-|-.+..||.|||||.+ +|.|+-++++.+..
T Consensus 348 ~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 348 PRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred cccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 35557899999999984 79999999986554
No 110
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.4e-23 Score=182.08 Aligned_cols=173 Identities=21% Similarity=0.263 Sum_probs=129.7
Q ss_pred ccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHh--hCCCceEEEecchhHH
Q 016375 189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDAT 266 (390)
Q Consensus 189 ~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvf~~~~~~~ 266 (390)
+|++++||||.+.-........ ....++.... +......-|.....+.+..-++. ..+.+++|-+-+++.|
T Consensus 387 ~q~i~VSATPg~~E~e~s~~~v-veQiIRPTGL------lDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGGNV-VEQIIRPTGL------LDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHHhccCce-eEEeecCCCC------CCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 5899999999874332221110 0111111111 11122223333344444444333 3679999999999999
Q ss_pred HHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCC-----CCcchhhhcc
Q 016375 267 RLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP-----TNSKDYIHRV 341 (390)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~-----~~~~~~~Q~~ 341 (390)
+.+.++|.+.|+++..+|++...-+|.+++++++.|.++|||+.+.+.+|+|+|.+..|.++|.. .|..+++|.+
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864 6888999999
Q ss_pred ccccCCCCcceEEEEeccccHHHHHHHH
Q 016375 342 GRTARAGRTGVAISLVNQYELEWYLQIE 369 (390)
Q Consensus 342 GR~~R~~~~~~~i~~~~~~~~~~~~~~~ 369 (390)
|||.|. -.|+++.+.+.-...+...+.
T Consensus 540 GRAARN-~~GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 540 GRAARN-VNGKVILYADKITDSMQKAID 566 (663)
T ss_pred HHHhhc-cCCeEEEEchhhhHHHHHHHH
Confidence 999997 469999999876655554443
No 111
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=2e-24 Score=199.21 Aligned_cols=332 Identities=20% Similarity=0.210 Sum_probs=228.5
Q ss_pred HHHhcCCCCCchHHHhhH--HhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHH
Q 016375 22 ACENVGWKTPSKIQAEAI--PHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (390)
Q Consensus 22 ~l~~~g~~~~~~~Q~~~~--~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 99 (390)
..+..|...++++|.+++ +.+..+++++..+||+.|||+++-+.++..++. ..+.++.+.|..+.+..-.
T Consensus 215 ~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~--------~rr~~llilp~vsiv~Ek~ 286 (1008)
T KOG0950|consen 215 YAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC--------RRRNVLLILPYVSIVQEKI 286 (1008)
T ss_pred HHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH--------HhhceeEecceeehhHHHH
Confidence 445678889999999998 567788999999999999999988888777765 4556899999999999999
Q ss_pred HHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHH---hhcCCCccCCCccEEEEehhhhhcccccHH
Q 016375 100 EQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDH---LTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176 (390)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~---~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~ 176 (390)
..+..+..+.++.+..+.|........ +.-++.|+|.++-... +.... ++..+++||+||.|.+.+..-+.
T Consensus 287 ~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g--~~~~~g~vvVdElhmi~d~~rg~ 360 (1008)
T KOG0950|consen 287 SALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQG--RLDFLGMVVVDELHMIGDKGRGA 360 (1008)
T ss_pred hhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcC--CccccCcEEEeeeeeeeccccch
Confidence 999999999999998888766655443 2468999998865443 33222 36678999999999888877666
Q ss_pred HHHHHHHhC-----CCCccEEEEeecCchhHH--HHHHHhc----CCCeEEecCCccc----------cccccceeEEec
Q 016375 177 SLDEILNVI-----PRMRQTYLFSATMTKKVK--KLQRACL----KNPVKIEAASKYS----------TVDTLKQQYRFV 235 (390)
Q Consensus 177 ~~~~~~~~~-----~~~~~~i~~saT~~~~~~--~~~~~~~----~~~~~~~~~~~~~----------~~~~~~~~~~~~ 235 (390)
.+..++... ....|+++||||.++.-. ....... ..|..+....... ...++...+...
T Consensus 361 ~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~ 440 (1008)
T KOG0950|consen 361 ILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSN 440 (1008)
T ss_pred HHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhh
Confidence 666665432 233569999999887432 1111110 0111110000000 000000000000
Q ss_pred CCCcchhHHHHHHHh-h-CCCceEEEecchhHHHHHHHHHHhc-------------------------------------
Q 016375 236 PAKYKDCYLVYILTE-V-SASSTMVFTRTCDATRLLALMLRNL------------------------------------- 276 (390)
Q Consensus 236 ~~~~~~~~~~~~~~~-~-~~~~~lvf~~~~~~~~~l~~~l~~~------------------------------------- 276 (390)
....+.+.+..+..+ . .+..+||||+++..++.++..+...
T Consensus 441 ~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~t 520 (1008)
T KOG0950|consen 441 LGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKT 520 (1008)
T ss_pred cccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHhee
Confidence 000111122222221 1 3456999999999888877554321
Q ss_pred -CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEec----CCCCcchhhhccccccCCCCc-
Q 016375 277 -GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD----IPTNSKDYIHRVGRTARAGRT- 350 (390)
Q Consensus 277 -~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~----~~~~~~~~~Q~~GR~~R~~~~- 350 (390)
...+...|.+.+.++|+.+...|++|...|+++|+.+..|+|+|-.++++-.- ...+..+|.|++||+||.|.+
T Consensus 521 i~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT 600 (1008)
T KOG0950|consen 521 IPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDT 600 (1008)
T ss_pred ccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccccc
Confidence 11267788999999999999999999999999999999999998766665432 235677999999999999754
Q ss_pred -ceEEEEeccccHHHHHH
Q 016375 351 -GVAISLVNQYELEWYLQ 367 (390)
Q Consensus 351 -~~~i~~~~~~~~~~~~~ 367 (390)
|.++.++.+.+......
T Consensus 601 ~GdsiLI~k~~e~~~~~~ 618 (1008)
T KOG0950|consen 601 LGDSILIIKSSEKKRVRE 618 (1008)
T ss_pred CcceEEEeeccchhHHHH
Confidence 88999999988766653
No 112
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.93 E-value=3.2e-24 Score=191.36 Aligned_cols=309 Identities=19% Similarity=0.276 Sum_probs=211.1
Q ss_pred CchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH-hccCC
Q 016375 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSGI 109 (390)
Q Consensus 31 ~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~ 109 (390)
.+.+-.+++..+.+++.+++.|+||||||......+.++-.. ....+.+.-|++.-+..++.+... .+..+
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~--------~~g~I~~TQPRRVAavslA~RVAeE~~~~l 123 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA--------SSGKIACTQPRRVAAVSLAKRVAEEMGCQL 123 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc--------cCCcEEeecCchHHHHHHHHHHHHHhCCCc
Confidence 467777888999999999999999999997754444443222 233388899999888887777543 44444
Q ss_pred CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcc--cccHHHHHHHHHhCCC
Q 016375 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN--DDFEKSLDEILNVIPR 187 (390)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~--~~~~~~~~~~~~~~~~ 187 (390)
+..|....-- .......+.|.++|-+.|++.+..+. .++.+++||+||||+=.- +-..-.++.+....+.
T Consensus 124 G~~VGY~IRF------ed~ts~~TrikymTDG~LLRE~l~Dp--~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~ 195 (674)
T KOG0922|consen 124 GEEVGYTIRF------EDSTSKDTRIKYMTDGMLLREILKDP--LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPD 195 (674)
T ss_pred CceeeeEEEe------cccCCCceeEEEecchHHHHHHhcCC--ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCC
Confidence 4333221111 11122357899999999999888765 578999999999994221 1122233344444443
Q ss_pred CccEEEEeecCchhHHHHHHHhcCC-CeEEecCCccccccccceeEEe-cCCCcchhHHHH---HHHhhCCCceEEEecc
Q 016375 188 MRQTYLFSATMTKKVKKLQRACLKN-PVKIEAASKYSTVDTLKQQYRF-VPAKYKDCYLVY---ILTEVSASSTMVFTRT 262 (390)
Q Consensus 188 ~~~~i~~saT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~lvf~~~ 262 (390)
-++|.||||+.. +.+ ..+++. ++........+.. ..+.. ...++....+.. +....+.+.+|||...
T Consensus 196 -LklIimSATlda--~kf-S~yF~~a~i~~i~GR~fPVe----i~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtG 267 (674)
T KOG0922|consen 196 -LKLIIMSATLDA--EKF-SEYFNNAPILTIPGRTFPVE----ILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTG 267 (674)
T ss_pred -ceEEEEeeeecH--HHH-HHHhcCCceEeecCCCCcee----EEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCC
Confidence 359999999875 333 334444 4433333222211 11111 122222233332 2233466789999999
Q ss_pred hhHHHHHHHHHHhc----C--C--ceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecC----
Q 016375 263 CDATRLLALMLRNL----G--Q--RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI---- 330 (390)
Q Consensus 263 ~~~~~~l~~~l~~~----~--~--~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~---- 330 (390)
+++++..++.|.+. + . -+..+++.++.+++..+.+.-..|..+|+++|++++..+.++++..||.-+.
T Consensus 268 qeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~ 347 (674)
T KOG0922|consen 268 QEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQK 347 (674)
T ss_pred HHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEE
Confidence 99999999999875 1 1 2467899999999999988888899999999999999999999999987553
Q ss_pred --------------CCCcchhhhccccccCCCCcceEEEEeccccHHH
Q 016375 331 --------------PTNSKDYIHRVGRTARAGRTGVAISLVNQYELEW 364 (390)
Q Consensus 331 --------------~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~ 364 (390)
|-|-.+..||.||+||.+ .|+|+-++++.+.+.
T Consensus 348 ~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 348 KYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred eeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh
Confidence 336667899999999985 699999999877644
No 113
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.3e-25 Score=193.02 Aligned_cols=314 Identities=18% Similarity=0.197 Sum_probs=220.3
Q ss_pred CCCchHHHhhHHhHhc---CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 29 KTPSKIQAEAIPHALE---GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~---~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
..+||||...+..+.- .++.+|+.|+|+|||++...+++. ..+.||++|.+..-++||..+++.|
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t------------ikK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT------------IKKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee------------ecccEEEEecCccCHHHHHHHHHhh
Confidence 3489999999999874 357999999999999886655543 5778999999999999999999999
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCC-------CccCCCccEEEEehhhhhcccccHHHH
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTK-------GFSLGTLKYLVLDEADRLLNDDFEKSL 178 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~-------~~~~~~~~~iIiDE~H~~~~~~~~~~~ 178 (390)
..-.+..++.++++... ....++.|+|+|+.++...-.+.- .+.-+.++++++||+|.+.+..|++.+
T Consensus 369 sti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVl 443 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVL 443 (776)
T ss_pred cccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHH
Confidence 88777788888877654 234568999999988755332211 112466899999999988777777766
Q ss_pred HHHHHhCCCCccEEEEeecCchhHHHHHHHhcC-CCeEE----------------ecCC-----------ccccccccce
Q 016375 179 DEILNVIPRMRQTYLFSATMTKKVKKLQRACLK-NPVKI----------------EAAS-----------KYSTVDTLKQ 230 (390)
Q Consensus 179 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~-~~~~~----------------~~~~-----------~~~~~~~~~~ 230 (390)
..+.... -+++|||+-..-+.+....+. .|-.+ .... ++-.......
T Consensus 444 siv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 444 SIVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 6555443 689999976543333322111 01000 0000 0001111111
Q ss_pred eEEecCCCcchhHHHHHHH--hhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhcc-CCccEE
Q 016375 231 QYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA-GECNIL 307 (390)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~il 307 (390)
....+-+..+-.....+++ +.+++++|||..++-....++-.|.+ ..+.|.+++.+|.++++.|+- ..++.+
T Consensus 519 ~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 519 MLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred heeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceE
Confidence 2222223444444444444 44899999999988877777755533 456788999999999999986 457777
Q ss_pred EEeCCCCCCCCCCCCCEEEEecCC-CCcchhhhccccccCCCC------cceEEEEeccccHHHHHHHH
Q 016375 308 ICTDVASRGLDIPSVDMVINYDIP-TNSKDYIHRVGRTARAGR------TGVAISLVNQYELEWYLQIE 369 (390)
Q Consensus 308 v~t~~~~~G~d~~~~~~vi~~~~~-~~~~~~~Q~~GR~~R~~~------~~~~i~~~~~~~~~~~~~~~ 369 (390)
.-+.....++|+|.+.++|..+.. .|..+-.||+||..|..+ ++-.+.+++.+..++...-+
T Consensus 594 FlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStK 662 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTK 662 (776)
T ss_pred EEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhh
Confidence 778888999999999999998876 566788999999999732 24678888888887766544
No 114
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.93 E-value=1.5e-24 Score=195.79 Aligned_cols=323 Identities=19% Similarity=0.256 Sum_probs=222.7
Q ss_pred CCCCCchHHHhhHHhHh----cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHH
Q 016375 27 GWKTPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (390)
Q Consensus 27 g~~~~~~~Q~~~~~~i~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 102 (390)
|+ +|-+||.-.+.++. ++-++|+...+|.|||... ++.+..+.+.+. +|+ =|||||+..| ++|.+++
T Consensus 397 ~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~-----~gp-HLVVvPsSTl-eNWlrEf 467 (941)
T KOG0389|consen 397 GI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGN-----PGP-HLVVVPSSTL-ENWLREF 467 (941)
T ss_pred CC-cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCC-----CCC-cEEEecchhH-HHHHHHH
Confidence 45 58999999888865 3457899999999999764 344444444332 333 3899999776 8899999
Q ss_pred HHhccCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHH
Q 016375 103 EALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSL 178 (390)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~ 178 (390)
.+|++. +.+..++|........+.. ...++|+++|+......-...+.+.-.+|+++|+||.| ++.+.....+
T Consensus 468 ~kwCPs--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgH-mLKN~~SeRy 544 (941)
T KOG0389|consen 468 AKWCPS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGH-MLKNRTSERY 544 (941)
T ss_pred HHhCCc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchh-hhhccchHHH
Confidence 999987 8889999998765544332 23789999998766432222222334568999999999 5554445566
Q ss_pred HHHHHhCCCCccEEEEeecCchh-HHHHHHH-------------------------------------------------
Q 016375 179 DEILNVIPRMRQTYLFSATMTKK-VKKLQRA------------------------------------------------- 208 (390)
Q Consensus 179 ~~~~~~~~~~~~~i~~saT~~~~-~~~~~~~------------------------------------------------- 208 (390)
..+.....+ ..+++|+||-.+ +.+++..
T Consensus 545 ~~LM~I~An--~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~P 622 (941)
T KOG0389|consen 545 KHLMSINAN--FRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKP 622 (941)
T ss_pred HHhcccccc--ceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhH
Confidence 666655433 368899996431 1111100
Q ss_pred ---------hcC----CCeEEecCC----------------------cccc--ccc--cceeEEec--------------
Q 016375 209 ---------CLK----NPVKIEAAS----------------------KYST--VDT--LKQQYRFV-------------- 235 (390)
Q Consensus 209 ---------~~~----~~~~~~~~~----------------------~~~~--~~~--~~~~~~~~-------------- 235 (390)
.+. ....+.... ...+ ... +...++..
T Consensus 623 FILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de 702 (941)
T KOG0389|consen 623 FILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDE 702 (941)
T ss_pred HHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHH
Confidence 000 000000000 0000 000 00000000
Q ss_pred -------------------------------------------------------CCCcchhHHHHHHHhh--CCCceEE
Q 016375 236 -------------------------------------------------------PAKYKDCYLVYILTEV--SASSTMV 258 (390)
Q Consensus 236 -------------------------------------------------------~~~~~~~~~~~~~~~~--~~~~~lv 258 (390)
-...+...+..++.+. .+++++|
T Consensus 703 ~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLi 782 (941)
T KOG0389|consen 703 KLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLI 782 (941)
T ss_pred HHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEE
Confidence 0134444555555544 5689999
Q ss_pred EecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCC--ccEEEEeCCCCCCCCCCCCCEEEEecCCCCcch
Q 016375 259 FTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE--CNILICTDVASRGLDIPSVDMVINYDIPTNSKD 336 (390)
Q Consensus 259 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~ 336 (390)
|...-.....+..+|..+++....++|.+.-.+|..+++.|+..+ .-+|++|.+.+.|+|+..+++||++|...+|-.
T Consensus 783 FSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~d 862 (941)
T KOG0389|consen 783 FSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYD 862 (941)
T ss_pred eeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcc
Confidence 999999999999999999999999999999999999999999754 336889999999999999999999999999999
Q ss_pred hhhccccccCCCCcc--eEEEEeccccHH
Q 016375 337 YIHRVGRTARAGRTG--VAISLVNQYELE 363 (390)
Q Consensus 337 ~~Q~~GR~~R~~~~~--~~i~~~~~~~~~ 363 (390)
-.|+-.||+|.|+.. .++.+++....+
T Consensus 863 D~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 863 DKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred cchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 999999999999765 567778877664
No 115
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.93 E-value=5.3e-23 Score=201.40 Aligned_cols=329 Identities=16% Similarity=0.238 Sum_probs=202.5
Q ss_pred CHHHHHHHHhcCCCCCchHHHhhHH----hHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCC
Q 016375 16 RDELVEACENVGWKTPSKIQAEAIP----HALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT 91 (390)
Q Consensus 16 ~~~~~~~l~~~g~~~~~~~Q~~~~~----~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~ 91 (390)
+..+.+.+...|+ ++|+.|.++++ .+.+++++++.||||+|||++|++|++..+. .+++++|.+||
T Consensus 232 ~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---------~~~~vvi~t~t 301 (850)
T TIGR01407 232 SSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---------TEKPVVISTNT 301 (850)
T ss_pred cHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---------CCCeEEEEeCc
Confidence 3466677777898 58999998776 4445788999999999999999999877653 24579999999
Q ss_pred HHHHHHHHH-HHHHhccCC--CceEEEEecCCchH---------------------------------------------
Q 016375 92 RELAIQISE-QFEALGSGI--SLRCAVLVGGVDMM--------------------------------------------- 123 (390)
Q Consensus 92 ~~l~~q~~~-~~~~~~~~~--~~~~~~~~~~~~~~--------------------------------------------- 123 (390)
++|.+|+.. ++..+.... ++++..+.|.....
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999865 444433222 24444444433210
Q ss_pred --------------------------HHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccc-----
Q 016375 124 --------------------------QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND----- 172 (390)
Q Consensus 124 --------------------------~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~----- 172 (390)
.........++|+|+++..|+..+..... -+....++||||||++.+.
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~-ilp~~~~lIiDEAH~L~d~a~~~~ 460 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPE-LFPSFRDLIIDEAHHLPDIAENQL 460 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccc-cCCCCCEEEEECcchHHHHHHHHh
Confidence 00001122678999999999887754432 2456689999999965420
Q ss_pred --cc-----HHH-------------------------------------------------------------HHH---H
Q 016375 173 --DF-----EKS-------------------------------------------------------------LDE---I 181 (390)
Q Consensus 173 --~~-----~~~-------------------------------------------------------------~~~---~ 181 (390)
.+ ... ... .
T Consensus 461 ~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~ 540 (850)
T TIGR01407 461 QEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKF 540 (850)
T ss_pred cceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 00 000 000 0
Q ss_pred HHh-----------C-------------------------------------CCCccEEEEeecCch--hHHHHHHHhcC
Q 016375 182 LNV-----------I-------------------------------------PRMRQTYLFSATMTK--KVKKLQRACLK 211 (390)
Q Consensus 182 ~~~-----------~-------------------------------------~~~~~~i~~saT~~~--~~~~~~~~~~~ 211 (390)
... + ++...+|++|||+.. ....+......
T Consensus 541 ~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl 620 (850)
T TIGR01407 541 DLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGL 620 (850)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCC
Confidence 000 0 111258899999874 23333332221
Q ss_pred C-CeEEecCCccccccccceeEEecCCC-------cchh---HHHHHHH---hhCCCceEEEecchhHHHHHHHHHHhc-
Q 016375 212 N-PVKIEAASKYSTVDTLKQQYRFVPAK-------YKDC---YLVYILT---EVSASSTMVFTRTCDATRLLALMLRNL- 276 (390)
Q Consensus 212 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~---~~~~~~~lvf~~~~~~~~~l~~~l~~~- 276 (390)
+ ....... ....+...+....++.. .... .+...+. ....++++||++|.+..+.+++.|...
T Consensus 621 ~~~~~~~~~--~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 621 TDVHFNTIE--PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred Cccccceec--CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 1 1111111 11111111111111110 1111 1222221 235678999999999999999999752
Q ss_pred ---CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCC--EEEEecCCCCc-----------------
Q 016375 277 ---GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD--MVINYDIPTNS----------------- 334 (390)
Q Consensus 277 ---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~--~vi~~~~~~~~----------------- 334 (390)
+.+ ++..+.. .+|.++++.|++++..||++|+.+++|+|+|+.. .||+.+.|..+
T Consensus 699 ~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g 775 (850)
T TIGR01407 699 EFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEG 775 (850)
T ss_pred cccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhc
Confidence 333 2233332 4688899999999999999999999999999844 67777776421
Q ss_pred -------------chhhhccccccCCCCcceEEEEeccc
Q 016375 335 -------------KDYIHRVGRTARAGRTGVAISLVNQY 360 (390)
Q Consensus 335 -------------~~~~Q~~GR~~R~~~~~~~i~~~~~~ 360 (390)
..+.|.+||+.|..++.-+++++++.
T Consensus 776 ~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 776 KNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred CCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 13589999999998777677777765
No 116
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.7e-23 Score=193.23 Aligned_cols=309 Identities=21% Similarity=0.247 Sum_probs=206.0
Q ss_pred CCchHHHhhHHhHhcC----CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 30 TPSKIQAEAIPHALEG----KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~----~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.+.+.|..+++.+... ..+++.+.||||||-.|+-.+...+. .|+.+|+++|..+|..|+.++++..
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~---------~GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA---------QGKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH---------cCCEEEEEeccccchHHHHHHHHHH
Confidence 5789999999998765 57999999999999988765555543 5788999999999999999998875
Q ss_pred ccCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccc-----c-H
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-----F-E 175 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-----~-~ 175 (390)
.. .++.+++++....++...| .++..|+|+|...+ ...+.++++||+||-|..+..+ + .
T Consensus 269 Fg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl--------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 269 FG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL--------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred hC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh--------cCchhhccEEEEeccccccccCCcCCCcCH
Confidence 43 6778888888766655544 46899999995433 2357889999999999655422 1 1
Q ss_pred HHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCcccc--ccccceeEEecC--CCc---chhHHHHHH
Q 016375 176 KSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST--VDTLKQQYRFVP--AKY---KDCYLVYIL 248 (390)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~---~~~~~~~~~ 248 (390)
+.+ ++...-...+++++-||||+-. ......-+.+..+........ .+.. .....-. ... -...+...+
T Consensus 338 Rdv-A~~Ra~~~~~pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~~a~~p~v-~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 338 RDV-AVLRAKKENAPVVLGSATPSLE--SYANAESGKYKLLRLTNRAGRARLPRV-EIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred HHH-HHHHHHHhCCCEEEecCCCCHH--HHHhhhcCceEEEEccccccccCCCcc-eEEeccccccccCccCCHHHHHHH
Confidence 222 2233333445699999996653 333333333343433333321 1111 1111111 111 113344444
Q ss_pred Hhh--CCCceEEEecchhH------------------------------------------------------------H
Q 016375 249 TEV--SASSTMVFTRTCDA------------------------------------------------------------T 266 (390)
Q Consensus 249 ~~~--~~~~~lvf~~~~~~------------------------------------------------------------~ 266 (390)
++. .+.++|+|.|.+.. .
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccH
Confidence 322 56777777665444 2
Q ss_pred HHHHHHHHhc--CCceeeccCCCCH--HHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCC----------
Q 016375 267 RLLALMLRNL--GQRAIPISGHMSQ--SKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT---------- 332 (390)
Q Consensus 267 ~~l~~~l~~~--~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~---------- 332 (390)
+++.+.|++. +.++..+++++.. ..-+..+..|.+|+.+|||+|+++..|.|+|++..|..++...
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~ 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchH
Confidence 5555555543 3455566665543 3356889999999999999999999999999999888776532
Q ss_pred --CcchhhhccccccCCCCcceEEEEeccccH
Q 016375 333 --NSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (390)
Q Consensus 333 --~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~ 362 (390)
....+.|..||+||.+++|.+++-....+-
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 223568999999999888888777765553
No 117
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.92 E-value=1.1e-23 Score=197.78 Aligned_cols=325 Identities=17% Similarity=0.169 Sum_probs=221.7
Q ss_pred CchHHHhhHHhHh---c-CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 31 PSKIQAEAIPHAL---E-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 31 ~~~~Q~~~~~~i~---~-~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
+|.||.+.+.++. + +-+.+++.++|.|||+..+..+....++......+......|||||+ .|+..|..++.++.
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 6999999998875 2 45899999999999998776665555544223333455568999996 89999999999998
Q ss_pred cCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCC
Q 016375 107 SGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186 (390)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~ 186 (390)
.- +++..+.|........+...++++|+|++++.+.+.+... .-.++.|+|+||-| ...+.-.+...++.....
T Consensus 1055 pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l---~~~~wNYcVLDEGH-VikN~ktkl~kavkqL~a 1128 (1549)
T KOG0392|consen 1055 PF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYL---IKIDWNYCVLDEGH-VIKNSKTKLTKAVKQLRA 1128 (1549)
T ss_pred ch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHH---HhcccceEEecCcc-eecchHHHHHHHHHHHhh
Confidence 65 6666677776666666666678999999999998765532 23457899999999 555444545555544443
Q ss_pred CCccEEEEeecCchhH-HHHHHH---------------------------------------------------------
Q 016375 187 RMRQTYLFSATMTKKV-KKLQRA--------------------------------------------------------- 208 (390)
Q Consensus 187 ~~~~~i~~saT~~~~~-~~~~~~--------------------------------------------------------- 208 (390)
++ .+.+|+||..+. .+++..
T Consensus 1129 ~h--RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1129 NH--RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred cc--eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33 588999964311 000000
Q ss_pred ----hcC--------CCe--------------------EEecCCcc--cccc-----------ccce-----eEEec---
Q 016375 209 ----CLK--------NPV--------------------KIEAASKY--STVD-----------TLKQ-----QYRFV--- 235 (390)
Q Consensus 209 ----~~~--------~~~--------------------~~~~~~~~--~~~~-----------~~~~-----~~~~~--- 235 (390)
.+. +++ .+....+. .... +.++ .+...
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 000 000 00000000 0000 0000 00000
Q ss_pred --------------------CCCcchhHHHHHHHh----------------hCCCceEEEecchhHHHHHHHHHHhcC--
Q 016375 236 --------------------PAKYKDCYLVYILTE----------------VSASSTMVFTRTCDATRLLALMLRNLG-- 277 (390)
Q Consensus 236 --------------------~~~~~~~~~~~~~~~----------------~~~~~~lvf~~~~~~~~~l~~~l~~~~-- 277 (390)
....|...+..++.+ ..+++++|||+-+..++.+.+-|.+..
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 112233333333322 135689999999999999998776653
Q ss_pred -CceeeccCCCCHHHHHHHHHHhccC-CccEE-EEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcce--
Q 016375 278 -QRAIPISGHMSQSKRLGALNKFKAG-ECNIL-ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGV-- 352 (390)
Q Consensus 278 -~~~~~~~~~~~~~~~~~~~~~f~~~-~~~il-v~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~-- 352 (390)
.....++|..++.+|.++.++|+++ .++|| ++|...+-|+|+.++++||+++-.|+|..-+|+..||+|.|++..
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 3456899999999999999999998 68875 467899999999999999999999999999999999999998864
Q ss_pred EEEEeccccHHH
Q 016375 353 AISLVNQYELEW 364 (390)
Q Consensus 353 ~i~~~~~~~~~~ 364 (390)
|+.++..+..+.
T Consensus 1447 VyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1447 VYRLITRGTLEE 1458 (1549)
T ss_pred eeeehhcccHHH
Confidence 566777766544
No 118
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.92 E-value=2.4e-23 Score=192.47 Aligned_cols=326 Identities=17% Similarity=0.153 Sum_probs=205.6
Q ss_pred CCchHHHhhHHhHhcC----------CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHH
Q 016375 30 TPSKIQAEAIPHALEG----------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~----------~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 99 (390)
.++|||++++..+.++ ..++++..+|+|||+.....+...+.+.....+ ...++|||+|. .|+..|+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~--~~~k~lVV~P~-sLv~nWk 314 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP--LINKPLVVAPS-SLVNNWK 314 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc--cccccEEEccH-HHHHHHH
Confidence 4899999999887642 359999999999998865555544444322111 22678999995 8889999
Q ss_pred HHHHHhccCCCceEEEEecCCch---HHH-HH---hcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccc
Q 016375 100 EQFEALGSGISLRCAVLVGGVDM---MQQ-TL---ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND 172 (390)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~---~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~ 172 (390)
+++.+|.....+....+.+.... ..+ +. ......-|++.+++.+..+... .....++++|+||.|+.-+.
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccch
Confidence 99999987656666667776664 000 00 0112456888899998776664 23566999999999965543
Q ss_pred ccHHHHHHHHHhCCCCccEEEEeecCchh-HHH-----------------------------------------------
Q 016375 173 DFEKSLDEILNVIPRMRQTYLFSATMTKK-VKK----------------------------------------------- 204 (390)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~saT~~~~-~~~----------------------------------------------- 204 (390)
. ...+. .+..+. .++.|++|+||-++ +.+
T Consensus 392 ~-s~~~k-aL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~ 468 (776)
T KOG0390|consen 392 D-SLTLK-ALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQ 468 (776)
T ss_pred h-hHHHH-HHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHH
Confidence 2 22233 333332 23468888885321 000
Q ss_pred ----HHHH-----------------------------------------------------------hcCCCeEEecCCc
Q 016375 205 ----LQRA-----------------------------------------------------------CLKNPVKIEAASK 221 (390)
Q Consensus 205 ----~~~~-----------------------------------------------------------~~~~~~~~~~~~~ 221 (390)
+... .++.|..+.....
T Consensus 469 eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~ 548 (776)
T KOG0390|consen 469 ELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEK 548 (776)
T ss_pred HHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccc
Confidence 0000 0001111100000
Q ss_pred ccc------------ccccceeEEecCCCcchhHHHHHH---HhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCC
Q 016375 222 YST------------VDTLKQQYRFVPAKYKDCYLVYIL---TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGH 286 (390)
Q Consensus 222 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 286 (390)
... ...............+...+..++ .+....++.+..|.....+.+...+.-.|..+..++|.
T Consensus 549 ~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~ 628 (776)
T KOG0390|consen 549 TEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGK 628 (776)
T ss_pred ccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCC
Confidence 000 000000000000112222333333 22234455555666666666777777779999999999
Q ss_pred CCHHHHHHHHHHhccCC--cc-EEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEE--ecccc
Q 016375 287 MSQSKRLGALNKFKAGE--CN-ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL--VNQYE 361 (390)
Q Consensus 287 ~~~~~~~~~~~~f~~~~--~~-ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~--~~~~~ 361 (390)
++..+|..+++.|++.. .. +|.++.+.++|+++-+++.+|.+|+.|+|..-.|+++|++|.|++..|++| +..+.
T Consensus 629 ~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 629 TSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred CchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 99999999999999843 23 455678999999999999999999999999999999999999999877554 55544
Q ss_pred HHH
Q 016375 362 LEW 364 (390)
Q Consensus 362 ~~~ 364 (390)
.+.
T Consensus 709 iEE 711 (776)
T KOG0390|consen 709 IEE 711 (776)
T ss_pred chH
Confidence 443
No 119
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.92 E-value=3.7e-23 Score=177.57 Aligned_cols=309 Identities=12% Similarity=0.156 Sum_probs=208.9
Q ss_pred CCCchHHHhhHHhHh-cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhcc
Q 016375 29 KTPSKIQAEAIPHAL-EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~-~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 107 (390)
..|-|+|++.+...+ +|..+++...+|.|||+.++. ++.+++ ..+..||+||. ++...|++.+.+|..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla--IA~yyr--------aEwplliVcPA-svrftWa~al~r~lp 265 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA--IARYYR--------AEWPLLIVCPA-SVRFTWAKALNRFLP 265 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH--HHHHHh--------hcCcEEEEecH-HHhHHHHHHHHHhcc
Confidence 458899999997765 567899999999999988653 333333 34568999996 677899999999876
Q ss_pred CCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCC
Q 016375 108 GISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187 (390)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~ 187 (390)
.... +.+..++.+..... ..-..|.|.+++.+...-.- +....+.+||+||.|++-+ .-.+....+...+..
T Consensus 266 s~~p-i~vv~~~~D~~~~~---~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~Lk~-sktkr~Ka~~dllk~ 337 (689)
T KOG1000|consen 266 SIHP-IFVVDKSSDPLPDV---CTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHMLKD-SKTKRTKAATDLLKV 337 (689)
T ss_pred cccc-eEEEecccCCcccc---ccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhhhhc-cchhhhhhhhhHHHH
Confidence 4322 44444554443221 12356999999887554322 2234588999999995544 444557777777777
Q ss_pred CccEEEEeecCch-------------------hHHHHHHHhcCCC---eEEecCCcc-----------------------
Q 016375 188 MRQTYLFSATMTK-------------------KVKKLQRACLKNP---VKIEAASKY----------------------- 222 (390)
Q Consensus 188 ~~~~i~~saT~~~-------------------~~~~~~~~~~~~~---~~~~~~~~~----------------------- 222 (390)
..++|++|+||.- +..++...++... ..+....-.
T Consensus 338 akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL 417 (689)
T KOG1000|consen 338 AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVL 417 (689)
T ss_pred hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999731 1222222222210 000000000
Q ss_pred ccccccceeEEe-cC-------------------------------------CCcchhHHHHHHH------hhCCCceEE
Q 016375 223 STVDTLKQQYRF-VP-------------------------------------AKYKDCYLVYILT------EVSASSTMV 258 (390)
Q Consensus 223 ~~~~~~~~~~~~-~~-------------------------------------~~~~~~~~~~~~~------~~~~~~~lv 258 (390)
...+.-...... .+ ...+...+.+.+. ..+..|.+|
T Consensus 418 ~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflV 497 (689)
T KOG1000|consen 418 KQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLV 497 (689)
T ss_pred hhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEE
Confidence 000000000000 00 0111111112222 235678999
Q ss_pred EecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccC-CccE-EEEeCCCCCCCCCCCCCEEEEecCCCCcch
Q 016375 259 FTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG-ECNI-LICTDVASRGLDIPSVDMVINYDIPTNSKD 336 (390)
Q Consensus 259 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~i-lv~t~~~~~G~d~~~~~~vi~~~~~~~~~~ 336 (390)
|+......+-+...+.+.++....++|.+++.+|...-+.|+.+ +..| +++..+.++|+++..++.|++...+|++..
T Consensus 498 FaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgv 577 (689)
T KOG1000|consen 498 FAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGV 577 (689)
T ss_pred EehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCce
Confidence 99999999999999999999999999999999999999999975 4555 456678999999999999999999999999
Q ss_pred hhhccccccCCCCcceEEEE
Q 016375 337 YIHRVGRTARAGRTGVAISL 356 (390)
Q Consensus 337 ~~Q~~GR~~R~~~~~~~i~~ 356 (390)
++|+-.|++|.|++..|.+.
T Consensus 578 LlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 578 LLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred EEechhhhhhccccceeeEE
Confidence 99999999999988665433
No 120
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.9e-22 Score=184.62 Aligned_cols=319 Identities=18% Similarity=0.165 Sum_probs=216.9
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+|+ .+++.|.-..-.+.+| -+..+.||.|||+++.+|++..++ .|+.|-+++|+..|+.+-++.+..
T Consensus 74 ~lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL---------~G~~VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 74 TLGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYAL---------QGRRVHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred HcCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHH---------cCCCeEEEcCCHHHHHHHHHHHHH
Confidence 3687 6888888777777654 577999999999998888776654 577799999999999999999999
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcC-----CCccCCCccEEEEehhhhhcc-------
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNT-----KGFSLGTLKYLVLDEADRLLN------- 171 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~-----~~~~~~~~~~iIiDE~H~~~~------- 171 (390)
+...+++.+....++.+...+...+ .+||+++|...| ++++... .....+.+.++||||++.++=
T Consensus 142 ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPL 219 (764)
T PRK12326 142 LYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPL 219 (764)
T ss_pred HHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCce
Confidence 8888899999998887766555444 589999997665 2233221 112246688999999993210
Q ss_pred ----------------------------------------------------------ccc-HHHHHHHHHhC-------
Q 016375 172 ----------------------------------------------------------DDF-EKSLDEILNVI------- 185 (390)
Q Consensus 172 ----------------------------------------------------------~~~-~~~~~~~~~~~------- 185 (390)
... ...+..+.+.+
T Consensus 220 iISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~ 299 (764)
T PRK12326 220 VLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQ 299 (764)
T ss_pred eeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHh
Confidence 000 00011111110
Q ss_pred ------------------------------------------------------------CCCccEEEEeecCchhHHHH
Q 016375 186 ------------------------------------------------------------PRMRQTYLFSATMTKKVKKL 205 (390)
Q Consensus 186 ------------------------------------------------------------~~~~~~i~~saT~~~~~~~~ 205 (390)
...+.+.+||+|.....+++
T Consensus 300 ~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef 379 (764)
T PRK12326 300 RDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQL 379 (764)
T ss_pred cCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHH
Confidence 00114889999987766665
Q ss_pred HHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHH--hhCCCceEEEecchhHHHHHHHHHHhcCCceeec
Q 016375 206 QRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPI 283 (390)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 283 (390)
.+.+--. .. ..+...+....-.....+.....+...+...+. +..+.|+||.+.+++.++.+++.|.+.+++..++
T Consensus 380 ~~iY~l~-Vv-~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vL 457 (764)
T PRK12326 380 RQFYDLG-VS-VIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVL 457 (764)
T ss_pred HHHhCCc-EE-ECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceee
Confidence 5554333 22 222222211111111222233333333433332 3378999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhccCC-ccEEEEeCCCCCCCCCCCC---------------CEEEEecCCCCcchhhhccccccCC
Q 016375 284 SGHMSQSKRLGALNKFKAGE-CNILICTDVASRGLDIPSV---------------DMVINYDIPTNSKDYIHRVGRTARA 347 (390)
Q Consensus 284 ~~~~~~~~~~~~~~~f~~~~-~~ilv~t~~~~~G~d~~~~---------------~~vi~~~~~~~~~~~~Q~~GR~~R~ 347 (390)
+......+-..+-+. |+ -.|.|||+++++|.|+.=- =+||....+.|..--.|..||+||+
T Consensus 458 NAk~~~~EA~IIa~A---G~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQ 534 (764)
T PRK12326 458 NAKNDAEEARIIAEA---GKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQ 534 (764)
T ss_pred ccCchHhHHHHHHhc---CCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccC
Confidence 987554443333333 43 3489999999999998411 1678788889999999999999999
Q ss_pred CCcceEEEEeccccH
Q 016375 348 GRTGVAISLVNQYEL 362 (390)
Q Consensus 348 ~~~~~~i~~~~~~~~ 362 (390)
|.+|.+..|++-++.
T Consensus 535 GDpGss~f~lSleDd 549 (764)
T PRK12326 535 GDPGSSVFFVSLEDD 549 (764)
T ss_pred CCCCceeEEEEcchh
Confidence 999999988886553
No 121
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.90 E-value=6.2e-22 Score=186.29 Aligned_cols=353 Identities=16% Similarity=0.185 Sum_probs=237.5
Q ss_pred CCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHH
Q 016375 14 GLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 93 (390)
Q Consensus 14 ~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 93 (390)
..++.+.+.++...--..+..+.++++.+.+++.++|.+.||+|||......+++.....+ ....+++--|++-
T Consensus 157 ~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRI 230 (924)
T KOG0920|consen 157 KKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRI 230 (924)
T ss_pred hhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchH
Confidence 3456666655554433568999999999999999999999999999987777887776644 4556888899988
Q ss_pred HHHHHHHHHHH-hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhc-c
Q 016375 94 LAIQISEQFEA-LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL-N 171 (390)
Q Consensus 94 l~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~-~ 171 (390)
-+...+++... .+...+-.+.-...-.. .....+.+++||.+-|++.+.... .+....+||+||+|.=. .
T Consensus 231 sAIsvAeRVa~ER~~~~g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~~--~l~~vthiivDEVHER~i~ 302 (924)
T KOG0920|consen 231 SAISVAERVAKERGESLGEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSDP--TLSGVTHIIVDEVHERSIN 302 (924)
T ss_pred HHHHHHHHHHHHhccccCCeeeEEEeeec------ccCCceeEEEecHHHHHHHhccCc--ccccCceeeeeeEEEccCC
Confidence 88888877654 22222222111111111 112237899999999999998844 57889999999999432 2
Q ss_pred cccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCcccc-c---------------ccccee----
Q 016375 172 DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST-V---------------DTLKQQ---- 231 (390)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~---- 231 (390)
.++.-.+...+-...+.-++|+||||... +....+++....+........ . ......
T Consensus 303 ~DflLi~lk~lL~~~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~ 379 (924)
T KOG0920|consen 303 TDFLLILLKDLLPRNPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPE 379 (924)
T ss_pred cccHHHHHHHHhhhCCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccc
Confidence 34433333333333355679999999874 223333333222221111100 0 000000
Q ss_pred --------EEecCCCcchhHHHHHHHh----hCCCceEEEecchhHHHHHHHHHHhc-------CCceeeccCCCCHHHH
Q 016375 232 --------YRFVPAKYKDCYLVYILTE----VSASSTMVFTRTCDATRLLALMLRNL-------GQRAIPISGHMSQSKR 292 (390)
Q Consensus 232 --------~~~~~~~~~~~~~~~~~~~----~~~~~~lvf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~~ 292 (390)
......+.+...+..++.. ...+.+|||.+...+...+.+.|... ..-+.++|+.++..++
T Consensus 380 ~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ 459 (924)
T KOG0920|consen 380 RSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQ 459 (924)
T ss_pred cCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHH
Confidence 1111112333344444432 24678999999999999999999753 2446789999999999
Q ss_pred HHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCC------------------CCcchhhhccccccCCCCcceEE
Q 016375 293 LGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP------------------TNSKDYIHRVGRTARAGRTGVAI 354 (390)
Q Consensus 293 ~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~------------------~~~~~~~Q~~GR~~R~~~~~~~i 354 (390)
..+...-..|..+|+++|++++.++.++++-.||..+.. -|..+..||.||+||. ..|.|+
T Consensus 460 ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy 538 (924)
T KOG0920|consen 460 QAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICY 538 (924)
T ss_pred HHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeE
Confidence 999988888999999999999999999999999876542 2445679999999998 689999
Q ss_pred EEeccccHHHHHH---HHHHhCCcceeeccccc
Q 016375 355 SLVNQYELEWYLQ---IEKLIGMLYILFSIEAT 384 (390)
Q Consensus 355 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 384 (390)
.+++....+.+.. +-+.++.+.+.+++..+
T Consensus 539 ~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK 571 (924)
T KOG0920|consen 539 HLYTRSRYEKLMLAYQLPEILRTPLEELCLHIK 571 (924)
T ss_pred EeechhhhhhcccccCChHHHhChHHHhhheee
Confidence 9999876665544 45666767766666555
No 122
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=2.6e-22 Score=178.05 Aligned_cols=313 Identities=18% Similarity=0.234 Sum_probs=209.7
Q ss_pred CCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH-h
Q 016375 27 GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-L 105 (390)
Q Consensus 27 g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~ 105 (390)
..-..+++-.+++.++..++.++|.+.||||||......+.+.=+. ..++++-+.-|++.-+..++.+..+ +
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-------k~gk~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-------KGGKKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-------cCCceEeecCcchHHHHHHHHHHHHHh
Confidence 3445688888999999999999999999999998754434332211 1455688889999888887776543 4
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcc--cccHHHHHHHHH
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN--DDFEKSLDEILN 183 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~--~~~~~~~~~~~~ 183 (390)
+..++-.|....- .......++-+-++|-++|++.+.... ++..+++|||||||.-.- +=....+..+..
T Consensus 335 gvkLG~eVGYsIR------FEdcTSekTvlKYMTDGmLlREfL~ep--dLasYSViiiDEAHERTL~TDILfgLvKDIar 406 (902)
T KOG0923|consen 335 GVKLGHEVGYSIR------FEDCTSEKTVLKYMTDGMLLREFLSEP--DLASYSVIIVDEAHERTLHTDILFGLVKDIAR 406 (902)
T ss_pred CcccccccceEEE------eccccCcceeeeeecchhHHHHHhccc--cccceeEEEeehhhhhhhhhhHHHHHHHHHHh
Confidence 3333222211000 111122346688999999999887644 788999999999994222 111223333334
Q ss_pred hCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCc-chhHHHHHHH---hhCCCceEEE
Q 016375 184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY-KDCYLVYILT---EVSASSTMVF 259 (390)
Q Consensus 184 ~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~lvf 259 (390)
..+ .-.++++|||+.. +.+...+-..|+.......++ +...|...|... .......+++ ..+.+.+|||
T Consensus 407 ~Rp-dLKllIsSAT~DA--ekFS~fFDdapIF~iPGRRyP----Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVF 479 (902)
T KOG0923|consen 407 FRP-DLKLLISSATMDA--EKFSAFFDDAPIFRIPGRRYP----VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVF 479 (902)
T ss_pred hCC-cceEEeeccccCH--HHHHHhccCCcEEeccCcccc----eeeecccCCchhHHHHHHhhheeeEeccCCccEEEE
Confidence 333 3459999999766 444433333444433333332 222333333322 2222222222 3367889999
Q ss_pred ecchhHHHHHHHHHHhc---------CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecC
Q 016375 260 TRTCDATRLLALMLRNL---------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI 330 (390)
Q Consensus 260 ~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~ 330 (390)
...+++.+...+.|++. .+-+.++++.++...+..+.+---.|-.+|++||+++++++.++++..||.-+.
T Consensus 480 ltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf 559 (902)
T KOG0923|consen 480 LTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGF 559 (902)
T ss_pred eccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcc
Confidence 99999988887777653 234788999999999999988888888999999999999999999999986543
Q ss_pred ------------------CCCcchhhhccccccCCCCcceEEEEeccccH
Q 016375 331 ------------------PTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (390)
Q Consensus 331 ------------------~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~ 362 (390)
|-|-.+..||.||+||.| +|+|+-+++....
T Consensus 560 ~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY 608 (902)
T KOG0923|consen 560 VKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY 608 (902)
T ss_pred ccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh
Confidence 335567899999999997 6999999985443
No 123
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.2e-21 Score=184.41 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=126.0
Q ss_pred EEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhh--CCCceEEEecchhHHHH
Q 016375 191 TYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRL 268 (390)
Q Consensus 191 ~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~ 268 (390)
+-+||+|......++.+.+--... ..+...+....-.....+.....+...+...+... .+.++||||++++.++.
T Consensus 536 LaGMTGTA~te~~Ef~~iY~L~Vv--~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~ 613 (1025)
T PRK12900 536 LAGMTGTAETEASEFFEIYKLDVV--VIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSET 613 (1025)
T ss_pred hcccCCCChhHHHHHHHHhCCcEE--ECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHH
Confidence 556666665555555443322222 22222222222222333445555666777777543 78999999999999999
Q ss_pred HHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCC---CCC-----EEEEecCCCCcchhhhc
Q 016375 269 LALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP---SVD-----MVINYDIPTNSKDYIHR 340 (390)
Q Consensus 269 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~---~~~-----~vi~~~~~~~~~~~~Q~ 340 (390)
+++.|...++++..+|+ .+.+|+..+..|..+...|+|||+++++|+|++ .+. +||....+.|...+.|+
T Consensus 614 Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql 691 (1025)
T PRK12900 614 LSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQL 691 (1025)
T ss_pred HHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHH
Confidence 99999999999999996 577889999999999999999999999999998 443 34778888999999999
Q ss_pred cccccCCCCcceEEEEeccccH
Q 016375 341 VGRTARAGRTGVAISLVNQYEL 362 (390)
Q Consensus 341 ~GR~~R~~~~~~~i~~~~~~~~ 362 (390)
.||+||.|.+|.++.|++.++.
T Consensus 692 ~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 692 RGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred hhhhhcCCCCcceEEEechhHH
Confidence 9999999999999999997664
No 124
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.9e-21 Score=181.23 Aligned_cols=317 Identities=19% Similarity=0.179 Sum_probs=214.6
Q ss_pred cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
+|+ .+++.|. +..+.-++.-+..+.||.|||+++.+|++..++ .|+.|-+++|+..|+.+-++.+..+
T Consensus 79 lGm-~~ydVQl--iGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al---------~G~~VhvvT~ndyLA~RD~e~m~~l 146 (913)
T PRK13103 79 MGM-RHFDVQL--IGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL---------SGKGVHVVTVNDYLARRDANWMRPL 146 (913)
T ss_pred hCC-CcchhHH--HhhhHhccCccccccCCCCChHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 575 4555555 445555677888999999999998888876554 5777999999999999999999999
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCCCc-----cCCCccEEEEehhhhhccc-------
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKGF-----SLGTLKYLVLDEADRLLND------- 172 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~~~-----~~~~~~~iIiDE~H~~~~~------- 172 (390)
...+++.+.++.++.....+...+. ++|+++|..-| ++++...-.+ ..+.+.++||||+|.++=+
T Consensus 147 ~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLI 224 (913)
T PRK13103 147 YEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLI 224 (913)
T ss_pred hcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCcee
Confidence 8888999999988877666554443 89999998876 4444432111 2377899999999942100
Q ss_pred -------------------------------------cc---------------HHHHHHHH------------------
Q 016375 173 -------------------------------------DF---------------EKSLDEIL------------------ 182 (390)
Q Consensus 173 -------------------------------------~~---------------~~~~~~~~------------------ 182 (390)
.| ...+..++
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~ 304 (913)
T PRK13103 225 ISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNL 304 (913)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhh
Confidence 00 00000000
Q ss_pred -------HhC-------------------------------------------------------------------CCC
Q 016375 183 -------NVI-------------------------------------------------------------------PRM 188 (390)
Q Consensus 183 -------~~~-------------------------------------------------------------------~~~ 188 (390)
+.+ ...
T Consensus 305 ~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (913)
T PRK13103 305 GLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLY 384 (913)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhc
Confidence 000 000
Q ss_pred ccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHH--hhCCCceEEEecchhHH
Q 016375 189 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDAT 266 (390)
Q Consensus 189 ~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lvf~~~~~~~ 266 (390)
.++.+||+|......++...+--....+ +.. .+....-.....+.....+...+..-+. +..+.|+||-+.|++.+
T Consensus 385 ~kLsGMTGTa~te~~Ef~~iY~l~Vv~I-PTn-kP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~S 462 (913)
T PRK13103 385 NKLSGMTGTADTEAFEFRQIYGLDVVVI-PPN-KPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETS 462 (913)
T ss_pred chhccCCCCCHHHHHHHHHHhCCCEEEC-CCC-CCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHH
Confidence 1377888887666655555443332222 222 2221111112233344444444444444 33789999999999999
Q ss_pred HHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCC-ccEEEEeCCCCCCCCCC-------------------------
Q 016375 267 RLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE-CNILICTDVASRGLDIP------------------------- 320 (390)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~ilv~t~~~~~G~d~~------------------------- 320 (390)
+.+++.|+..+++..+++......+-..+- +.|+ -.|.|||+++++|.|+.
T Consensus 463 E~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 463 EHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 999999999999988888775544433333 3343 34899999999999983
Q ss_pred -------CC-----CEEEEecCCCCcchhhhccccccCCCCcceEEEEecccc
Q 016375 321 -------SV-----DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYE 361 (390)
Q Consensus 321 -------~~-----~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~ 361 (390)
.+ =+||....+.|..--.|..||+||+|.+|.+-.|++-++
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 11 167777888888889999999999999999988888644
No 125
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=1.1e-20 Score=177.53 Aligned_cols=131 Identities=21% Similarity=0.318 Sum_probs=114.8
Q ss_pred chhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCC
Q 016375 240 KDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGL 317 (390)
Q Consensus 240 ~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~ 317 (390)
....+...+... .+.+++|||++++.++.+++.|.+.|+++..+|++++..+|.++++.|++|+++|+|+|+.+++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 334444444433 578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEec-----CCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHH
Q 016375 318 DIPSVDMVINYD-----IPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKL 371 (390)
Q Consensus 318 d~~~~~~vi~~~-----~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~ 371 (390)
|+|+++.|++++ .|.+...|+|++||+||. ..|.|++|++..+......+.+.
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999988 688999999999999998 57999999998776666655544
No 126
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.89 E-value=1.8e-20 Score=181.18 Aligned_cols=315 Identities=19% Similarity=0.212 Sum_probs=192.7
Q ss_pred cCCCCCchHHHhhHHhHh----cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHH-HH
Q 016375 26 VGWKTPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI-SE 100 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~-~~ 100 (390)
-|+ +.|+.|.+....+. .+..+++.|+||+|||++|++|++... .+.+++|++||++|.+|. ..
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----------~~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----------DQRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----------CCCcEEEEeCcHHHHHHHHHH
Confidence 366 79999999776655 467899999999999999999977643 356799999999999998 46
Q ss_pred HHHHhccCCCceEEEEecCCchH-----------------------------------------------HHHH------
Q 016375 101 QFEALGSGISLRCAVLVGGVDMM-----------------------------------------------QQTL------ 127 (390)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~------ 127 (390)
.+..+....++++..+.|+.... ..|.
T Consensus 311 ~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~ 390 (820)
T PRK07246 311 EVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDG 390 (820)
T ss_pred HHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccC
Confidence 66665554555555444433211 0000
Q ss_pred ------------------hcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccc-----c-------HH-
Q 016375 128 ------------------ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-----F-------EK- 176 (390)
Q Consensus 128 ------------------~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-----~-------~~- 176 (390)
.....++|+|+++..|+..+.... .+..++++||||||++.... . ..
T Consensus 391 ~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~ 468 (820)
T PRK07246 391 NLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQT 468 (820)
T ss_pred CCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHH
Confidence 011267899999998888765443 25678999999999754310 0 00
Q ss_pred -------------------------------------------------HHHHH--------HHh---------------
Q 016375 177 -------------------------------------------------SLDEI--------LNV--------------- 184 (390)
Q Consensus 177 -------------------------------------------------~~~~~--------~~~--------------- 184 (390)
.+..+ ...
T Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~ 548 (820)
T PRK07246 469 IQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQ 548 (820)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 00000 000
Q ss_pred ---------------------CCCCccEEEEeecCc--hhHHHHHHHhc-CCCeEEecCCccccccccceeEE--ecCCC
Q 016375 185 ---------------------IPRMRQTYLFSATMT--KKVKKLQRACL-KNPVKIEAASKYSTVDTLKQQYR--FVPAK 238 (390)
Q Consensus 185 ---------------------~~~~~~~i~~saT~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 238 (390)
++....+|++|||+. +... +..... ........+ .........+. .++..
T Consensus 549 ~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~---~~~~~~~~~~i~~~~p~~ 624 (820)
T PRK07246 549 SEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE---KDKKQDQLVVVDQDMPLV 624 (820)
T ss_pred CCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC---CChHHccEEEeCCCCCCC
Confidence 011124788888875 3222 222221 111111111 01110111111 11211
Q ss_pred c---chh---HHHHHHHh--hCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEe
Q 016375 239 Y---KDC---YLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICT 310 (390)
Q Consensus 239 ~---~~~---~~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t 310 (390)
. ... .+...+.. ..+++++|+++|.+..+.+++.|.....+. ..-|... .+..+++.|++++..||++|
T Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~ 701 (820)
T PRK07246 625 TETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGL 701 (820)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEec
Confidence 0 111 11121111 357899999999999999999997654443 3333222 24568999999888899999
Q ss_pred CCCCCCCCCCC--CCEEEEecCCCC-c-----------------------------chhhhccccccCCCCcceEEEEec
Q 016375 311 DVASRGLDIPS--VDMVINYDIPTN-S-----------------------------KDYIHRVGRTARAGRTGVAISLVN 358 (390)
Q Consensus 311 ~~~~~G~d~~~--~~~vi~~~~~~~-~-----------------------------~~~~Q~~GR~~R~~~~~~~i~~~~ 358 (390)
..+++|+|+|+ ...||+...|.. + ..+.|.+||..|..++.-++++++
T Consensus 702 ~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD 781 (820)
T PRK07246 702 GSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILD 781 (820)
T ss_pred chhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 99999999974 556677776632 2 135899999999977766777777
Q ss_pred cc
Q 016375 359 QY 360 (390)
Q Consensus 359 ~~ 360 (390)
+.
T Consensus 782 ~R 783 (820)
T PRK07246 782 RR 783 (820)
T ss_pred Cc
Confidence 65
No 127
>COG4889 Predicted helicase [General function prediction only]
Probab=99.89 E-value=2.2e-23 Score=190.10 Aligned_cols=327 Identities=19% Similarity=0.204 Sum_probs=193.5
Q ss_pred CCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcC----CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCc
Q 016375 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG----KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~----~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 83 (390)
-+|+.+.. .+...++.-..-..|||||+.++++...+ ...=+.+.||+|||++++. +.+++. ..
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala----------~~ 207 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA----------AA 207 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh----------hh
Confidence 35555533 44455555455567999999999988764 4556667799999999765 444442 35
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHH-----------------------HHH--hcCCCCCEEEe
Q 016375 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ-----------------------QTL--ALGKRPHIVVA 138 (390)
Q Consensus 84 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~--~~~~~~~i~i~ 138 (390)
++|+++|+.+|..|..+++..-. ..++......++..... .+. ....+--|+++
T Consensus 208 ~iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFs 286 (1518)
T COG4889 208 RILFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFS 286 (1518)
T ss_pred heEeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEE
Confidence 69999999999999777664421 22333333333222110 111 11234569999
Q ss_pred CCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHH----HHHHHHHh-CCCCccEEEEeecCchhHHHHHHHh----
Q 016375 139 TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK----SLDEILNV-IPRMRQTYLFSATMTKKVKKLQRAC---- 209 (390)
Q Consensus 139 t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~----~~~~~~~~-~~~~~~~i~~saT~~~~~~~~~~~~---- 209 (390)
|++++...-.... ..+..|++||.||||+........ .+..+... .-+..+.+.|||||.-..+.....-
T Consensus 287 TYQSl~~i~eAQe-~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s 365 (1518)
T COG4889 287 TYQSLPRIKEAQE-AGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHS 365 (1518)
T ss_pred cccchHHHHHHHH-cCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcc
Confidence 9999977554433 457889999999999865522211 11111100 0011236889999854322211111
Q ss_pred -----------------------------cCCCeEEecCCccccc-cccceeEEecCCCcchhHHHHHHHhh--------
Q 016375 210 -----------------------------LKNPVKIEAASKYSTV-DTLKQQYRFVPAKYKDCYLVYILTEV-------- 251 (390)
Q Consensus 210 -----------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 251 (390)
+-++-.+......... ................+....++..+
T Consensus 366 ~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g 445 (1518)
T COG4889 366 AELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNG 445 (1518)
T ss_pred ceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcc
Confidence 1111111111111000 00111111111111222222222111
Q ss_pred -------------CCCceEEEecchhHHHHHHHHHHhc-------------C--CceeeccCCCCHHHHHHHHH---Hhc
Q 016375 252 -------------SASSTMVFTRTCDATRLLALMLRNL-------------G--QRAIPISGHMSQSKRLGALN---KFK 300 (390)
Q Consensus 252 -------------~~~~~lvf~~~~~~~~~l~~~l~~~-------------~--~~~~~~~~~~~~~~~~~~~~---~f~ 300 (390)
+-.+.+-||.+.+....+++.+.+. + +.+..++|.|+-.+|.+.+. .|.
T Consensus 446 ~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~ 525 (1518)
T COG4889 446 EDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFE 525 (1518)
T ss_pred ccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCC
Confidence 1124688999888887777666531 2 33566788899888865554 345
Q ss_pred cCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCC
Q 016375 301 AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG 348 (390)
Q Consensus 301 ~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~ 348 (390)
..+|+||-...++++|+|+|.++.||++++-.+..+..|.+||++|-.
T Consensus 526 ~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 526 PNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred cchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 578999988899999999999999999999999999999999999973
No 128
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.88 E-value=1e-20 Score=155.63 Aligned_cols=187 Identities=39% Similarity=0.539 Sum_probs=145.9
Q ss_pred hcCCCCCchHHHhhHHhHhcC-CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 103 (390)
.+++..++++|.++++.+... +++++.++||+|||.+++.+++..+... ...++++++|+..++.||...+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-------~~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-------KGKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-------CCCcEEEEeCCHHHHHHHHHHHH
Confidence 456778999999999999988 9999999999999998877777766542 24579999999999999999999
Q ss_pred HhccCCCceEEEEecCCchHHHHHhcCCCC-CEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHH
Q 016375 104 ALGSGISLRCAVLVGGVDMMQQTLALGKRP-HIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182 (390)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~ 182 (390)
..............++.............. +++++|++.+.+...... .....++++|+||+|++....+...+..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 877654423333344443333333344444 999999999999887754 456678899999999887656778888888
Q ss_pred HhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecC
Q 016375 183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA 219 (390)
Q Consensus 183 ~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~ 219 (390)
..++...+++++|||++.........+......+...
T Consensus 155 ~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 155 KLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred HhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 8887778899999999998888888887765555444
No 129
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.87 E-value=8.7e-20 Score=179.61 Aligned_cols=109 Identities=16% Similarity=0.251 Sum_probs=85.0
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCC--ceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCC--CCEEEE
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQ--RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS--VDMVIN 327 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~--~~~vi~ 327 (390)
.+++++|+++|.+..+.+++.|..... ...++..+++...|..+++.|++++-.||++|..+++|+|+|+ ++.||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 567999999999999999999976432 1223333444456788999999988889999999999999997 578999
Q ss_pred ecCCCC-cc-----------------------------hhhhccccccCCCCcceEEEEeccc
Q 016375 328 YDIPTN-SK-----------------------------DYIHRVGRTARAGRTGVAISLVNQY 360 (390)
Q Consensus 328 ~~~~~~-~~-----------------------------~~~Q~~GR~~R~~~~~~~i~~~~~~ 360 (390)
...|.. +. .+.|.+||+.|..++.-+++++++.
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 887752 21 3489999999998776677777765
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=8.3e-20 Score=169.87 Aligned_cols=317 Identities=17% Similarity=0.141 Sum_probs=207.2
Q ss_pred cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
+|+ .+++.|.-.--.+ ++.-+..+.||-|||+++.+|++-.++ .|+.|=|++.+..|+..=++++..+
T Consensus 75 lG~-r~ydVQliGglvL--h~G~IAEMkTGEGKTLvAtLpayLnAL---------~GkgVhVVTvNdYLA~RDae~mg~v 142 (925)
T PRK12903 75 LGK-RPYDVQIIGGIIL--DLGSVAEMKTGEGKTITSIAPVYLNAL---------TGKGVIVSTVNEYLAERDAEEMGKV 142 (925)
T ss_pred hCC-CcCchHHHHHHHH--hcCCeeeecCCCCccHHHHHHHHHHHh---------cCCceEEEecchhhhhhhHHHHHHH
Confidence 576 5666666544333 455689999999999998887765443 5666889999999999888888887
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCCC-----ccCCCccEEEEehhhhhccc-------
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKG-----FSLGTLKYLVLDEADRLLND------- 172 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~~-----~~~~~~~~iIiDE~H~~~~~------- 172 (390)
..-+++.+.+...+.....+...+ .+||+++|...| +++++..-. ...+.+.+.||||++.++=+
T Consensus 143 y~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLI 220 (925)
T PRK12903 143 FNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLI 220 (925)
T ss_pred HHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccc
Confidence 777788988877766655544444 589999998766 444443211 11467889999999932100
Q ss_pred ---------ccHHHHHHHHHhC----------------------------------------------------------
Q 016375 173 ---------DFEKSLDEILNVI---------------------------------------------------------- 185 (390)
Q Consensus 173 ---------~~~~~~~~~~~~~---------------------------------------------------------- 185 (390)
.+......+...+
T Consensus 221 ISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd 300 (925)
T PRK12903 221 ISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKED 300 (925)
T ss_pred ccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcC
Confidence 0000011111100
Q ss_pred ----------------------------------------------------------CCCccEEEEeecCchhHHHHHH
Q 016375 186 ----------------------------------------------------------PRMRQTYLFSATMTKKVKKLQR 207 (390)
Q Consensus 186 ----------------------------------------------------------~~~~~~i~~saT~~~~~~~~~~ 207 (390)
.-..++.+||+|......++.+
T Consensus 301 ~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~ 380 (925)
T PRK12903 301 VEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFID 380 (925)
T ss_pred CceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHH
Confidence 0001477888887665555554
Q ss_pred HhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHH--hhCCCceEEEecchhHHHHHHHHHHhcCCceeeccC
Q 016375 208 ACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 285 (390)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~ 285 (390)
.+--....+ +...+....-.....+.....+...+...+. +..+.|+||.|.+++.++.+++.|.+.|++..+++.
T Consensus 381 iY~l~Vv~I--PTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA 458 (925)
T PRK12903 381 IYNMRVNVV--PTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNA 458 (925)
T ss_pred HhCCCEEEC--CCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecc
Confidence 443222222 2221111111111222333334444444333 237889999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHhccCC-ccEEEEeCCCCCCCCCCCCC--------EEEEecCCCCcchhhhccccccCCCCcceEEEE
Q 016375 286 HMSQSKRLGALNKFKAGE-CNILICTDVASRGLDIPSVD--------MVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 356 (390)
Q Consensus 286 ~~~~~~~~~~~~~f~~~~-~~ilv~t~~~~~G~d~~~~~--------~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~ 356 (390)
.....+-..+- +.|. -.|.|||+++++|.|+.--. +||....+.|..--.|..||+||+|.+|.+-.|
T Consensus 459 k~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 459 KQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 65544433332 3453 45899999999999994211 788888888888888999999999999999888
Q ss_pred ecccc
Q 016375 357 VNQYE 361 (390)
Q Consensus 357 ~~~~~ 361 (390)
++-.+
T Consensus 536 lSLeD 540 (925)
T PRK12903 536 ISLDD 540 (925)
T ss_pred Eecch
Confidence 88654
No 131
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.1e-19 Score=162.04 Aligned_cols=308 Identities=18% Similarity=0.238 Sum_probs=201.6
Q ss_pred CCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH-h
Q 016375 27 GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-L 105 (390)
Q Consensus 27 g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~ 105 (390)
.+......+.+++..+.+++.++|.+.||||||......++ +.+.. ....+-+.-|++.-+..++..... +
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~----edGY~----~~GmIGcTQPRRvAAiSVAkrVa~EM 424 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLY----EDGYA----DNGMIGCTQPRRVAAISVAKRVAEEM 424 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHH----hcccc----cCCeeeecCchHHHHHHHHHHHHHHh
Confidence 33445778888999999999999999999999987443333 32221 233466777999888888877654 4
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccc-ccH-HHHHHHHH
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFE-KSLDEILN 183 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~-~~~~~~~~ 183 (390)
+..++-.+....-- .......+.|-++|-+.|++....+. .+..++.||+||||.-+-+ +.. -.+..++.
T Consensus 425 ~~~lG~~VGYsIRF------EdvT~~~T~IkymTDGiLLrEsL~d~--~L~kYSviImDEAHERslNtDilfGllk~~la 496 (1042)
T KOG0924|consen 425 GVTLGDTVGYSIRF------EDVTSEDTKIKYMTDGILLRESLKDR--DLDKYSVIIMDEAHERSLNTDILFGLLKKVLA 496 (1042)
T ss_pred CCccccccceEEEe------eecCCCceeEEEeccchHHHHHhhhh--hhhheeEEEechhhhcccchHHHHHHHHHHHH
Confidence 33333222111111 11112346788999999988655543 5788999999999954331 111 12222222
Q ss_pred hCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhh-------CCCce
Q 016375 184 VIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV-------SASST 256 (390)
Q Consensus 184 ~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 256 (390)
.. ...++|..|||+.. ..+...+.+.|........++. ...+. .....+.+...+++. +.+.+
T Consensus 497 rR-rdlKliVtSATm~a--~kf~nfFgn~p~f~IpGRTyPV----~~~~~---k~p~eDYVeaavkq~v~Ihl~~~~Gdi 566 (1042)
T KOG0924|consen 497 RR-RDLKLIVTSATMDA--QKFSNFFGNCPQFTIPGRTYPV----EIMYT---KTPVEDYVEAAVKQAVQIHLSGPPGDI 566 (1042)
T ss_pred hh-ccceEEEeeccccH--HHHHHHhCCCceeeecCCccce----EEEec---cCchHHHHHHHHhhheEeeccCCCCCE
Confidence 22 34459999999876 4444444334443332222211 11111 122223333333221 45779
Q ss_pred EEEecchhHHHHHHHHHHhc----------CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEE
Q 016375 257 MVFTRTCDATRLLALMLRNL----------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI 326 (390)
Q Consensus 257 lvf~~~~~~~~~l~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi 326 (390)
+||....+..+-.+..++.. ++.+..+.+.++..-+..+.+.-..|..+++|||+++++.+.+|++..||
T Consensus 567 lIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVI 646 (1042)
T KOG0924|consen 567 LIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVI 646 (1042)
T ss_pred EEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEE
Confidence 99999988877666666542 56788899999999888888888888999999999999999999999999
Q ss_pred EecC------------------CCCcchhhhccccccCCCCcceEEEEecccc
Q 016375 327 NYDI------------------PTNSKDYIHRVGRTARAGRTGVAISLVNQYE 361 (390)
Q Consensus 327 ~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~ 361 (390)
..+. |.|-.+..||.|||||.| +|.|+-+|++..
T Consensus 647 D~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~a 698 (1042)
T KOG0924|consen 647 DTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDA 698 (1042)
T ss_pred ecCceeeeecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhH
Confidence 7553 345667899999999986 699999998743
No 132
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=2.4e-19 Score=169.91 Aligned_cols=139 Identities=22% Similarity=0.276 Sum_probs=119.2
Q ss_pred hhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCC
Q 016375 241 DCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLD 318 (390)
Q Consensus 241 ~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d 318 (390)
...+...+... .+.+++|||++...++.+++.|.+.|+++..+|++++..+|..+++.|++|.+.|+|+|+.+++|+|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcc
Confidence 33444444433 5788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecC-----CCCcchhhhccccccCCCCcceEEEEecc---------ccHHHHHHHHHHhCCcceeec
Q 016375 319 IPSVDMVINYDI-----PTNSKDYIHRVGRTARAGRTGVAISLVNQ---------YELEWYLQIEKLIGMLYILFS 380 (390)
Q Consensus 319 ~~~~~~vi~~~~-----~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 380 (390)
+|+++.||+++. |.+...|+|++||+||. .+|.|+.|++. .+......++..+++....+|
T Consensus 512 lp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 512 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred ccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 999999999885 67889999999999996 68999999985 455666677777777665554
No 133
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=2.8e-20 Score=159.83 Aligned_cols=329 Identities=17% Similarity=0.212 Sum_probs=210.0
Q ss_pred ccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCc
Q 016375 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 83 (390)
.+.++.|.+.|.+.++.+.++...--..+.++.+.++.+.+++.+++.+.||+|||.....+.++..... ..
T Consensus 21 ~k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--------~~ 92 (699)
T KOG0925|consen 21 AKAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--------LT 92 (699)
T ss_pred hhhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--------cc
Confidence 3458899999999999999998766678999999999999999999999999999988766666665542 23
Q ss_pred eEEEEcCCHHHHHHHHHHHHHh-ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEE
Q 016375 84 FACVLSPTRELAIQISEQFEAL-GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (390)
Q Consensus 84 ~~lil~P~~~l~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iI 162 (390)
.+...-|.+.-+.+.+.+...- --.++..+.... ........++-.-++|-++|++...+.. .+..++.||
T Consensus 93 ~v~CTQprrvaamsva~RVadEMDv~lG~EVGysI------rfEdC~~~~T~Lky~tDgmLlrEams~p--~l~~y~vii 164 (699)
T KOG0925|consen 93 GVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSI------RFEDCTSPNTLLKYCTDGMLLREAMSDP--LLGRYGVII 164 (699)
T ss_pred ceeecCchHHHHHHHHHHHHHHhccccchhccccc------cccccCChhHHHHHhcchHHHHHHhhCc--ccccccEEE
Confidence 4667778888777777665432 111111111100 0111111122233567777777766654 467899999
Q ss_pred Eehhhhhcc--cccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCC-c
Q 016375 163 LDEADRLLN--DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-Y 239 (390)
Q Consensus 163 iDE~H~~~~--~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 239 (390)
+||+|.-.- +-..-.++.+....+ .-+++.||||... ..+. .++++...+..+...+. +..|-..+.. .
T Consensus 165 LDeahERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~a--~Kfq-~yf~n~Pll~vpg~~Pv----Ei~Yt~e~erDy 236 (699)
T KOG0925|consen 165 LDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMSATLDA--EKFQ-RYFGNAPLLAVPGTHPV----EIFYTPEPERDY 236 (699)
T ss_pred echhhhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccch--HHHH-HHhCCCCeeecCCCCce----EEEecCCCChhH
Confidence 999995221 222234445555554 4569999999655 3333 44555444544432221 1122111111 1
Q ss_pred chhH---HHHHHHhhCCCceEEEecchhHHHHHHHHHHhc---------CCceeeccCCCCHHHHHHHHHHhcc---C--
Q 016375 240 KDCY---LVYILTEVSASSTMVFTRTCDATRLLALMLRNL---------GQRAIPISGHMSQSKRLGALNKFKA---G-- 302 (390)
Q Consensus 240 ~~~~---~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~---~-- 302 (390)
.... +..+......+.++||....++.+..++.+... ...+.+++ +.+...+.+-... |
T Consensus 237 lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~ 312 (699)
T KOG0925|consen 237 LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAY 312 (699)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCc
Confidence 1122 222233335778999999999999998888743 12455555 2222333322221 2
Q ss_pred CccEEEEeCCCCCCCCCCCCCEEEEecC------------------CCCcchhhhccccccCCCCcceEEEEecccc
Q 016375 303 ECNILICTDVASRGLDIPSVDMVINYDI------------------PTNSKDYIHRVGRTARAGRTGVAISLVNQYE 361 (390)
Q Consensus 303 ~~~ilv~t~~~~~G~d~~~~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~ 361 (390)
..+|+|+|++++..+.++++..||.-+. |.|..+..||.||+||. ..|+|+.++.+.-
T Consensus 313 ~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~ 388 (699)
T KOG0925|consen 313 GRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 388 (699)
T ss_pred cceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHh
Confidence 3569999999999999988888886443 45666789999999996 6799999998644
No 134
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=169.75 Aligned_cols=126 Identities=21% Similarity=0.307 Sum_probs=108.2
Q ss_pred CcchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCC--ccEEEEeCCC
Q 016375 238 KYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE--CNILICTDVA 313 (390)
Q Consensus 238 ~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ilv~t~~~ 313 (390)
..|...+.-++++. .++++|||+......+.+...|..+|+....++|.+.-++|...+++|+.+. +.+|++|...
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 34445555555544 5789999999999999999999999999999999999999999999999864 4567899999
Q ss_pred CCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcc--eEEEEeccccHH
Q 016375 314 SRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTG--VAISLVNQYELE 363 (390)
Q Consensus 314 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~--~~i~~~~~~~~~ 363 (390)
+.|+|+.++++||+||..|++.--.|...||+|.|+.. -.|-+++++..+
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 99999999999999999999999999999999999654 557777776653
No 135
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.85 E-value=8.6e-19 Score=164.07 Aligned_cols=276 Identities=18% Similarity=0.176 Sum_probs=173.8
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+|+ .+++.|.-. .+.-++.-+..+.||.|||+++.+|++-..+ .|+.|-|++++..|+.+-++.+..
T Consensus 72 ~lG~-r~ydvQlig--~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL---------~G~~VhVvT~NdyLA~RD~e~m~p 139 (870)
T CHL00122 72 TLGL-RHFDVQLIG--GLVLNDGKIAEMKTGEGKTLVATLPAYLNAL---------TGKGVHIVTVNDYLAKRDQEWMGQ 139 (870)
T ss_pred HhCC-CCCchHhhh--hHhhcCCccccccCCCCchHHHHHHHHHHHh---------cCCceEEEeCCHHHHHHHHHHHHH
Confidence 3677 466666654 4444577899999999999998888754433 466789999999999999999988
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCC-----CccCCCccEEEEehhhhhcccc-----
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLNDD----- 173 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~-----~~~~~~~~~iIiDE~H~~~~~~----- 173 (390)
+...+++.+.+..++.+...+...+ .++|+++|...| +++++..- ....+.+.++||||++.++=+.
T Consensus 140 vy~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPL 217 (870)
T CHL00122 140 IYRFLGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPL 217 (870)
T ss_pred HHHHcCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCce
Confidence 8778889999887777766555444 479999998655 23333221 1124668899999999311000
Q ss_pred -----------c-------------------------------------------------HHHHHHHHHhC--------
Q 016375 174 -----------F-------------------------------------------------EKSLDEILNVI-------- 185 (390)
Q Consensus 174 -----------~-------------------------------------------------~~~~~~~~~~~-------- 185 (390)
. ..++..+.+.+
T Consensus 218 iISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~ 297 (870)
T CHL00122 218 IISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFK 297 (870)
T ss_pred eccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhc
Confidence 0 00011111100
Q ss_pred -----------------------------------------------------------CCCccEEEEeecCchhHHHHH
Q 016375 186 -----------------------------------------------------------PRMRQTYLFSATMTKKVKKLQ 206 (390)
Q Consensus 186 -----------------------------------------------------------~~~~~~i~~saT~~~~~~~~~ 206 (390)
...+.+.+||+|......++.
T Consensus 298 d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~ 377 (870)
T CHL00122 298 NVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFE 377 (870)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHH
Confidence 001148889999877555554
Q ss_pred HHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHH-HHH-hhCCCceEEEecchhHHHHHHHHHHhcCCceeecc
Q 016375 207 RACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY-ILT-EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPIS 284 (390)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~ 284 (390)
..+ +-.....+.......... ....+.....+...+.. +.. +..+.|+||-|.|++.++.+++.|.+.+++..+++
T Consensus 378 ~iY-~l~vv~IPtnkp~~R~d~-~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLN 455 (870)
T CHL00122 378 KIY-NLEVVCIPTHRPMLRKDL-PDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLN 455 (870)
T ss_pred HHh-CCCEEECCCCCCccceeC-CCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceee
Confidence 444 333322222222111111 11222222223333332 222 33689999999999999999999999999999998
Q ss_pred CCC--CHHHHHHHHHHhccCC-ccEEEEeCCCCCCCCC
Q 016375 285 GHM--SQSKRLGALNKFKAGE-CNILICTDVASRGLDI 319 (390)
Q Consensus 285 ~~~--~~~~~~~~~~~f~~~~-~~ilv~t~~~~~G~d~ 319 (390)
... ...+-..+-+ .|+ -.|.|||+++++|.|+
T Consensus 456 Ak~~~~~~EA~IIA~---AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 456 AKPENVRRESEIVAQ---AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred CCCccchhHHHHHHh---cCCCCcEEEeccccCCCcCe
Confidence 863 2333333333 343 3489999999999997
No 136
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.85 E-value=1.4e-19 Score=167.25 Aligned_cols=160 Identities=20% Similarity=0.222 Sum_probs=111.4
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc-cC
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG-SG 108 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~-~~ 108 (390)
-|-.||++.+..+-++.+.+|.+||.+|||+....+ .+..++.. ....+++++|+.+|+.|....+.... ..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~-iEKVLRes------D~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYA-IEKVLRES------DSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHH-HHHHHhhc------CCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 478999999999999999999999999999876554 44444433 45679999999999999988876543 22
Q ss_pred CCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcC--CCccCCCccEEEEehhhhhcccccHHHHHHHHHhCC
Q 016375 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT--KGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186 (390)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~--~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~ 186 (390)
.-.....+.|.-..+-... .-+|.|+|+-|+-+-..+.+- .......+.+||+||+|.+....-.-.+.+++...+
T Consensus 584 t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~ 661 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP 661 (1330)
T ss_pred ccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC
Confidence 2222222233322221111 236899999998887766652 112367889999999997777655555555555442
Q ss_pred CCccEEEEeecCch
Q 016375 187 RMRQTYLFSATMTK 200 (390)
Q Consensus 187 ~~~~~i~~saT~~~ 200 (390)
+.++++|||..+
T Consensus 662 --CP~L~LSATigN 673 (1330)
T KOG0949|consen 662 --CPFLVLSATIGN 673 (1330)
T ss_pred --CCeeEEecccCC
Confidence 459999999755
No 137
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=4.3e-19 Score=160.98 Aligned_cols=313 Identities=19% Similarity=0.217 Sum_probs=190.8
Q ss_pred hHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCce
Q 016375 33 KIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLR 112 (390)
Q Consensus 33 ~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 112 (390)
..-.+++++|..+..++|++.||||||......++++=....+. ..+..+-|.-|++.-+...+++...-....+-.
T Consensus 259 aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~---~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~e 335 (1172)
T KOG0926|consen 259 AEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQS---SSPGMIGITQPRRVAAIAMAKRVAFELGVLGSE 335 (1172)
T ss_pred HHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccC---CCCCeeeecCchHHHHHHHHHHHHHHhccCccc
Confidence 33446788888889999999999999987554444433222111 124467788898887777666543322222222
Q ss_pred EEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHH-------hC
Q 016375 113 CAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN-------VI 185 (390)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~-------~~ 185 (390)
+....--.. .....+.|.++|-+-|++.+.++ |.+..++.||+||||.-+- +.+.+..++. .+
T Consensus 336 VsYqIRfd~------ti~e~T~IkFMTDGVLLrEi~~D--flL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~ 405 (1172)
T KOG0926|consen 336 VSYQIRFDG------TIGEDTSIKFMTDGVLLREIEND--FLLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKY 405 (1172)
T ss_pred eeEEEEecc------ccCCCceeEEecchHHHHHHHHh--HhhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHH
Confidence 221111111 12235789999999999988873 5688999999999995322 1222222222 12
Q ss_pred CC------CccEEEEeecCchhHHHHHHHhcC-CCeEEecCCccccccccceeEEecCCCcchhHH---HHHHHhhCCCc
Q 016375 186 PR------MRQTYLFSATMTKKVKKLQRACLK-NPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL---VYILTEVSASS 255 (390)
Q Consensus 186 ~~------~~~~i~~saT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 255 (390)
.. .-++|+||||+.-.-....+..+. .|..+..... ..+...+.....+..+..... ..+.+..+.+.
T Consensus 406 ~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdAR--QfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ 483 (1172)
T KOG0926|consen 406 YKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDAR--QFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGG 483 (1172)
T ss_pred hhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecc--cCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCc
Confidence 11 235999999975432222333332 2333333322 222223333333333333332 33445568899
Q ss_pred eEEEecchhHHHHHHHHHHhcCCc--------------------------------------------------------
Q 016375 256 TMVFTRTCDATRLLALMLRNLGQR-------------------------------------------------------- 279 (390)
Q Consensus 256 ~lvf~~~~~~~~~l~~~l~~~~~~-------------------------------------------------------- 279 (390)
+|||+..+.++.++++.|++....
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 999999999999999999764110
Q ss_pred -------------------------------------------eeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCC
Q 016375 280 -------------------------------------------AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRG 316 (390)
Q Consensus 280 -------------------------------------------~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G 316 (390)
+.++.+-++...+..+.+.-.+|..-++|+|+.++++
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 1111111333344444444445776799999999999
Q ss_pred CCCCCCCEEEEecCCC------------------CcchhhhccccccCCCCcceEEEEecccc
Q 016375 317 LDIPSVDMVINYDIPT------------------NSKDYIHRVGRTARAGRTGVAISLVNQYE 361 (390)
Q Consensus 317 ~d~~~~~~vi~~~~~~------------------~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~ 361 (390)
+.+|+++.||..+..+ |-.+.-||.|||||.| .|-|+.+|+..-
T Consensus 644 LTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAV 705 (1172)
T KOG0926|consen 644 LTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAV 705 (1172)
T ss_pred cccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHH
Confidence 9999999999866431 3445689999999997 699999998643
No 138
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.82 E-value=2.9e-18 Score=153.74 Aligned_cols=126 Identities=20% Similarity=0.275 Sum_probs=110.1
Q ss_pred CcchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCcc-EEEEeCCCC
Q 016375 238 KYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN-ILICTDVAS 314 (390)
Q Consensus 238 ~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-ilv~t~~~~ 314 (390)
..+...+..++... .++++++|.+.-+....+.++|...+++...++|...-.+|.+++.+|+..++- +|++|.+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 45555666666644 578999999999999999999999999999999999999999999999987654 577899999
Q ss_pred CCCCCCCCCEEEEecCCCCcchhhhccccccCCCCc--ceEEEEeccccHH
Q 016375 315 RGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRT--GVAISLVNQYELE 363 (390)
Q Consensus 315 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~--~~~i~~~~~~~~~ 363 (390)
-|+|+..+++||+|+..|+|.--.|+..|++|.|+. ..|+.++..+..+
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHH
Confidence 999999999999999999999999999999999865 5677777776654
No 139
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=1.3e-19 Score=168.17 Aligned_cols=312 Identities=18% Similarity=0.190 Sum_probs=205.7
Q ss_pred CCchHHHhhHHhHhc----CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 30 TPSKIQAEAIPHALE----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~----~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.+.+||...+.++.. +-+.+++..||.|||...+ .++..+.+... .....||++|+..| ..|..++..|
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtI-sLitYLmE~K~-----~~GP~LvivPlstL-~NW~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTI-SLITYLMEHKQ-----MQGPFLIIVPLSTL-VNWSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHH-HHHHHHHHHcc-----cCCCeEEecccccc-CCchhhcccc
Confidence 689999999988763 4589999999999997754 34445555433 23345999999888 5688999998
Q ss_pred ccCCCceEEEEecCCchHH--HHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHH
Q 016375 106 GSGISLRCAVLVGGVDMMQ--QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~ 183 (390)
.+. +....+.|...... .......+++|+++|++.+...-.- +.--.+.++||||.|++.+.. ..+...++
T Consensus 467 aPS--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~l---LsKI~W~yMIIDEGHRmKNa~--~KLt~~L~ 539 (1157)
T KOG0386|consen 467 APS--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKAL---LSKISWKYMIIDEGHRMKNAI--CKLTDTLN 539 (1157)
T ss_pred ccc--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHHH---HhccCCcceeecccccccchh--hHHHHHhh
Confidence 865 55555555544322 2222346899999999988651111 112347799999999876632 12333333
Q ss_pred hCCCCccEEEEeecCchhHHH-----------------------------------------------------------
Q 016375 184 VIPRMRQTYLFSATMTKKVKK----------------------------------------------------------- 204 (390)
Q Consensus 184 ~~~~~~~~i~~saT~~~~~~~----------------------------------------------------------- 204 (390)
..-...+.+++|+||..+.-.
T Consensus 540 t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLR 619 (1157)
T KOG0386|consen 540 THYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLR 619 (1157)
T ss_pred ccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHH
Confidence 222223356666664321000
Q ss_pred ----------------------------------------------------------HHHHhcCCCeEEecCCcccccc
Q 016375 205 ----------------------------------------------------------LQRACLKNPVKIEAASKYSTVD 226 (390)
Q Consensus 205 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 226 (390)
..+..++.|..+..........
T Consensus 620 RlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~ 699 (1157)
T KOG0386|consen 620 RLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLH 699 (1157)
T ss_pred hhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccc
Confidence 0000000010000000000000
Q ss_pred ccceeEEecCCCcchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCC-
Q 016375 227 TLKQQYRFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE- 303 (390)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~- 303 (390)
.. ....+-...+...+..++... .+++++.||..-.....+.++|.-.++....++|.+...+|...++.|+.-+
T Consensus 700 ~~--~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds 777 (1157)
T KOG0386|consen 700 YD--IKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDS 777 (1157)
T ss_pred cC--hhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCC
Confidence 00 000111234445555555443 5889999999999999999999999999999999999999999999999743
Q ss_pred --ccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEe
Q 016375 304 --CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 357 (390)
Q Consensus 304 --~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~ 357 (390)
+.+|++|.+.+.|+|+..+++||+||..|++....|+..|++|.|+...|-++.
T Consensus 778 ~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 778 PYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred ceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 336778999999999999999999999999999999999999999765544433
No 140
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.81 E-value=1.1e-18 Score=152.54 Aligned_cols=280 Identities=20% Similarity=0.251 Sum_probs=183.5
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (390)
+-++-.+||.||||+-++ +.+. ..+..++..|.+-|+.++++.++..+ +.|-.++|.+.....
T Consensus 192 kIi~H~GPTNSGKTy~AL----qrl~---------~aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRAL----QRLK---------SAKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVL 254 (700)
T ss_pred eEEEEeCCCCCchhHHHH----HHHh---------hhccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecC
Confidence 346677999999998754 3333 35557899999999999999998876 777778887655433
Q ss_pred HHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHH-HHHHHHHhCCCCccEEEEeecCchhHHH
Q 016375 126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK-SLDEILNVIPRMRQTYLFSATMTKKVKK 204 (390)
Q Consensus 126 ~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~-~~~~~~~~~~~~~~~i~~saT~~~~~~~ 204 (390)
.. ...+..+-||.++.-- -..+++.||||++.+.+.+-+- +.++++.......++++ - +.+..
T Consensus 255 ~~--~~~a~hvScTVEM~sv---------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG---e--psvld 318 (700)
T KOG0953|consen 255 DN--GNPAQHVSCTVEMVSV---------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG---E--PSVLD 318 (700)
T ss_pred CC--CCcccceEEEEEEeec---------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC---C--chHHH
Confidence 22 2346777777764321 2347899999999877744332 34444444433333322 1 22233
Q ss_pred HHHHhc---CCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCc-e
Q 016375 205 LQRACL---KNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR-A 280 (390)
Q Consensus 205 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~ 280 (390)
+.+..+ ++...++.... ..+..... ....-+.....+.+ |.|-|++....+...+.+.+.. +
T Consensus 319 lV~~i~k~TGd~vev~~YeR------------l~pL~v~~-~~~~sl~nlk~GDC-vV~FSkk~I~~~k~kIE~~g~~k~ 384 (700)
T KOG0953|consen 319 LVRKILKMTGDDVEVREYER------------LSPLVVEE-TALGSLSNLKPGDC-VVAFSKKDIFTVKKKIEKAGNHKC 384 (700)
T ss_pred HHHHHHhhcCCeeEEEeecc------------cCcceehh-hhhhhhccCCCCCe-EEEeehhhHHHHHHHHHHhcCcce
Confidence 333322 22222211111 11111111 22333334444555 4566788888899999888775 9
Q ss_pred eeccCCCCHHHHHHHHHHhcc--CCccEEEEeCCCCCCCCCCCCCEEEEecCC---------CCcchhhhccccccCCCC
Q 016375 281 IPISGHMSQSKRLGALNKFKA--GECNILICTDVASRGLDIPSVDMVINYDIP---------TNSKDYIHRVGRTARAGR 349 (390)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~f~~--~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~---------~~~~~~~Q~~GR~~R~~~ 349 (390)
.++.|..+++.|.+--..|++ ++++|||||+++++|+|+ +++.||+++.- .+..+..|..|||||.|.
T Consensus 385 aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s 463 (700)
T KOG0953|consen 385 AVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGS 463 (700)
T ss_pred EEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhccccccc
Confidence 999999999999999999998 899999999999999999 99999998764 466688999999999963
Q ss_pred ---cceEEEEeccccHHHHHHHHHHhCCcce
Q 016375 350 ---TGVAISLVNQYELEWYLQIEKLIGMLYI 377 (390)
Q Consensus 350 ---~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 377 (390)
.|.+.++-. +.+..+.+.++.+.+
T Consensus 464 ~~~~G~vTtl~~----eDL~~L~~~l~~p~e 490 (700)
T KOG0953|consen 464 KYPQGEVTTLHS----EDLKLLKRILKRPVE 490 (700)
T ss_pred CCcCceEEEeeH----hhHHHHHHHHhCCch
Confidence 355555533 344455555554443
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=4.8e-17 Score=152.27 Aligned_cols=275 Identities=18% Similarity=0.153 Sum_probs=173.7
Q ss_pred cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.|+ .+++.|. +..+.-++.-+..+.||.|||+++.+|++...+ .|+.|-||+++..|+..=++++..+
T Consensus 82 lG~-r~ydVQl--iGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL---------~GkgVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 82 LGM-RHFDVQL--IGGMVLHEGQIAEMKTGEGKTLVATLPSYLNAL---------TGKGVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred hCC-CcchhHH--HhhhhhcCCceeeecCCCChhHHHHHHHHHHhh---------cCCCeEEEeCCHHHHHhHHHHHHHH
Confidence 566 4555554 444444677899999999999998888776554 5667899999999999999998888
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-----HHHhhc-CCCccCCCccEEEEehhhhhccc-------
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-----MDHLTN-TKGFSLGTLKYLVLDEADRLLND------- 172 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-----~~~~~~-~~~~~~~~~~~iIiDE~H~~~~~------- 172 (390)
...+++.+.+..++.....+. ....+||+++|...| .+.+.. ......+.+.++||||++.++=+
T Consensus 150 y~~LGLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLI 227 (939)
T PRK12902 150 HRFLGLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLI 227 (939)
T ss_pred HHHhCCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCccc
Confidence 777889998887766554444 334689999998766 333332 11123577899999999932100
Q ss_pred ---------ccHHHH-------------------------------------------------------HHHHHhC---
Q 016375 173 ---------DFEKSL-------------------------------------------------------DEILNVI--- 185 (390)
Q Consensus 173 ---------~~~~~~-------------------------------------------------------~~~~~~~--- 185 (390)
...... ..+.+.+
T Consensus 228 ISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~ 307 (939)
T PRK12902 228 ISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAK 307 (939)
T ss_pred ccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHH
Confidence 000000 0000000
Q ss_pred ----------------------------------------------------------------CCCccEEEEeecCchh
Q 016375 186 ----------------------------------------------------------------PRMRQTYLFSATMTKK 201 (390)
Q Consensus 186 ----------------------------------------------------------------~~~~~~i~~saT~~~~ 201 (390)
....++.+||+|....
T Consensus 308 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te 387 (939)
T PRK12902 308 ELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTE 387 (939)
T ss_pred HHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHH
Confidence 0001477888887665
Q ss_pred HHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHH--hhCCCceEEEecchhHHHHHHHHHHhcCCc
Q 016375 202 VKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQR 279 (390)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~ 279 (390)
..++...+--....+ +...+....-.....+.....+...+...+. +..+.|+||-+.|++.++.+++.|.+.|++
T Consensus 388 ~~Ef~~iY~l~Vv~I--PTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~ 465 (939)
T PRK12902 388 EVEFEKTYKLEVTVI--PTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIP 465 (939)
T ss_pred HHHHHHHhCCcEEEc--CCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCc
Confidence 555555443222222 2222211111112223333334444443333 337899999999999999999999999999
Q ss_pred eeeccCCCC--HHHHHHHHHHhccCC-ccEEEEeCCCCCCCCC
Q 016375 280 AIPISGHMS--QSKRLGALNKFKAGE-CNILICTDVASRGLDI 319 (390)
Q Consensus 280 ~~~~~~~~~--~~~~~~~~~~f~~~~-~~ilv~t~~~~~G~d~ 319 (390)
..+++.... ..+-..+-+ .|+ -.|.|||+++++|.|+
T Consensus 466 h~vLNAk~~~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDI 505 (939)
T PRK12902 466 HNLLNAKPENVEREAEIVAQ---AGRKGAVTIATNMAGRGTDI 505 (939)
T ss_pred hheeeCCCcchHhHHHHHHh---cCCCCcEEEeccCCCCCcCE
Confidence 988888622 333333333 344 3489999999999887
No 142
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.81 E-value=3e-19 Score=144.74 Aligned_cols=154 Identities=21% Similarity=0.203 Sum_probs=101.4
Q ss_pred CCchHHHhhHHhHhc-------CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHH
Q 016375 30 TPSKIQAEAIPHALE-------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~-------~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 102 (390)
+|+++|.+++..+.+ ..++++.+|||+|||.+++..+.... . +++|++|+.+|+.||.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~----------~--~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA----------R--KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH----------C--EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc----------c--ceeEecCHHHHHHHHHHHH
Confidence 589999999999884 57899999999999998765444332 1 6999999999999999999
Q ss_pred HHhccCCCceEEE-----------EecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCC----------ccCCCccEE
Q 016375 103 EALGSGISLRCAV-----------LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG----------FSLGTLKYL 161 (390)
Q Consensus 103 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~----------~~~~~~~~i 161 (390)
..+.......... ..................+++++|.+.+......... .....+++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 7765432111111 0111111122333445789999999999876543211 123567899
Q ss_pred EEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCch
Q 016375 162 VLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (390)
Q Consensus 162 IiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~ 200 (390)
|+||+|++..... +..+.. .+...+++|||||.+
T Consensus 151 I~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 151 IIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp EEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S-
T ss_pred EEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCccC
Confidence 9999998766551 333333 444569999999863
No 143
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=1.1e-18 Score=153.11 Aligned_cols=358 Identities=12% Similarity=0.057 Sum_probs=228.9
Q ss_pred HHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHH
Q 016375 19 LVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (390)
Q Consensus 19 ~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 98 (390)
+.+.+..+.-...+.+|.+++..+.+|++.++...+.+||++++........... +....+++.|+.+++++.
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-------~~s~~~~~~~~~~~~~~~ 347 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-------HATNSLLPSEMVEHLRNG 347 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC-------cccceecchhHHHHhhcc
Confidence 3444555655678999999999999999999999999999998776655544332 455578999999887765
Q ss_pred HHHHHHhccCC---CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhh-cCCCcc--CCCccEEEEehhhhhccc
Q 016375 99 SEQFEALGSGI---SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLT-NTKGFS--LGTLKYLVLDEADRLLND 172 (390)
Q Consensus 99 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~-~~~~~~--~~~~~~iIiDE~H~~~~~ 172 (390)
.+.+.-..... .-.++-..++.....+......+.+++++.++....... +...+. +....++++||+|.+..
T Consensus 348 ~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~- 426 (1034)
T KOG4150|consen 348 SKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF- 426 (1034)
T ss_pred CCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec-
Confidence 54432111110 011122223333333444445678999999887754332 221111 23346899999995433
Q ss_pred ccHH----HHHHHHHhC-----CCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCcc-ccccccceeEEecCC-----
Q 016375 173 DFEK----SLDEILNVI-----PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY-STVDTLKQQYRFVPA----- 237 (390)
Q Consensus 173 ~~~~----~~~~~~~~~-----~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----- 237 (390)
.+.. .++++.... +..-+++-.++|....+....+.+-.+...+...... .......-+....+.
T Consensus 427 ~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 427 PTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhh
Confidence 2222 233332222 2234678788888777776655543333322222111 111111111111111
Q ss_pred -CcchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhc----CC----ceeeccCCCCHHHHHHHHHHhccCCccE
Q 016375 238 -KYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNL----GQ----RAIPISGHMSQSKRLGALNKFKAGECNI 306 (390)
Q Consensus 238 -~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~~~~~~~~f~~~~~~i 306 (390)
..+......++.+. .+-++|.||++++.++.+....++. +. .+..+.|+...++|..+...+-.|+..-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 12222223333222 5788999999999988776655442 21 2556789999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEecccc--HHHHHHHHHHhCCcceeeccccc
Q 016375 307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYE--LEWYLQIEKLIGMLYILFSIEAT 384 (390)
Q Consensus 307 lv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
+|+|++++-|+|+..++.|++.+.|.|..++.|..||+||.+++...+++..... ...+..-...++.+..++-++..
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~ 666 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQ 666 (1034)
T ss_pred EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecc
Confidence 9999999999999999999999999999999999999999998877666665444 44555556777777766655544
No 144
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.80 E-value=5.1e-16 Score=148.51 Aligned_cols=105 Identities=23% Similarity=0.345 Sum_probs=78.5
Q ss_pred CCCceEEEecchhHHHHHHHHHHhc-CCceeeccCCCCHHHHHHHHHHhc----cCCccEEEEeCCCCCCCCCCC--CCE
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNL-GQRAIPISGHMSQSKRLGALNKFK----AGECNILICTDVASRGLDIPS--VDM 324 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~f~----~~~~~ilv~t~~~~~G~d~~~--~~~ 324 (390)
..+.++|+++|.+..+.+++.|... +.+ ....+. ..+..+++.|+ .++..||++|..+++|+|+|+ ++.
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3455899999999999999998753 333 233332 24567776665 467789999999999999987 789
Q ss_pred EEEecCCCC-cc-----------------------------hhhhccccccCCCCcceEEEEeccc
Q 016375 325 VINYDIPTN-SK-----------------------------DYIHRVGRTARAGRTGVAISLVNQY 360 (390)
Q Consensus 325 vi~~~~~~~-~~-----------------------------~~~Q~~GR~~R~~~~~~~i~~~~~~ 360 (390)
||+...|.. +. .+.|.+||..|..++.-+++++++.
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 999887742 21 3489999999997776677777765
No 145
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.80 E-value=2.7e-16 Score=145.76 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=80.1
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhcc----CCccEEEEeCCCCCCCCC--------
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA----GECNILICTDVASRGLDI-------- 319 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~----~~~~ilv~t~~~~~G~d~-------- 319 (390)
.++.++|.+.|.+..+.+++.|...-.....+.|..+ .+...++.|++ |...||++|..+++|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 5678999999999999999999763222233444332 34567778876 467899999999999999
Q ss_pred CC--CCEEEEecCCCCcc-------------------------hhhhccccccCCCCc--ceEEEEeccc
Q 016375 320 PS--VDMVINYDIPTNSK-------------------------DYIHRVGRTARAGRT--GVAISLVNQY 360 (390)
Q Consensus 320 ~~--~~~vi~~~~~~~~~-------------------------~~~Q~~GR~~R~~~~--~~~i~~~~~~ 360 (390)
|+ ++.||+...|..+. .+.|.+||..|...+ .-++.++++.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 33 88999988874332 358999999999776 6677777755
No 146
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.79 E-value=9.3e-18 Score=129.99 Aligned_cols=144 Identities=44% Similarity=0.576 Sum_probs=110.8
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (390)
+++++.+|||+|||.+++..+....... ..++++|++|+..++.|+.+.+..+... +..+..+.+.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQ 72 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHH
Confidence 4689999999999998877666655431 4567999999999999999999887764 5777778887776666
Q ss_pred HHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecC
Q 016375 126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (390)
Q Consensus 126 ~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 198 (390)
........+++++|++.+........ .....++++|+||+|.+....+...............+++++||||
T Consensus 73 ~~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 65566789999999999988776643 2356788999999998877665544333344455667799999996
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.79 E-value=1.1e-16 Score=154.43 Aligned_cols=107 Identities=22% Similarity=0.279 Sum_probs=80.7
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCCc-eeeccCCCCHHHHHHHHHHhccCCc-cEEEEeCCCCCCCCCCC--CCEEEE
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQR-AIPISGHMSQSKRLGALNKFKAGEC-NILICTDVASRGLDIPS--VDMVIN 327 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~-~ilv~t~~~~~G~d~~~--~~~vi~ 327 (390)
..++++||++|...++.+.+.+...... .....+.. .+...++.|.++.- -++|++..+++|+|+++ ++.||+
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 4559999999999999999999986653 23333333 33477777877543 79999999999999987 678998
Q ss_pred ecCCCC------------------------------cchhhhccccccCCCCcceEEEEecccc
Q 016375 328 YDIPTN------------------------------SKDYIHRVGRTARAGRTGVAISLVNQYE 361 (390)
Q Consensus 328 ~~~~~~------------------------------~~~~~Q~~GR~~R~~~~~~~i~~~~~~~ 361 (390)
.+.|.- .....|.+||+.|..++.-++++++..-
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~ 618 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRY 618 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccc
Confidence 888742 1145999999999877766677766643
No 148
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.78 E-value=3.9e-18 Score=130.00 Aligned_cols=118 Identities=37% Similarity=0.615 Sum_probs=107.6
Q ss_pred cchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCC
Q 016375 239 YKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRG 316 (390)
Q Consensus 239 ~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G 316 (390)
.+...+..++... .+.++||||++...++.+.+.|.+.+..+..+|+.++..++..+++.|+++...++++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 4555666666655 47899999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEE
Q 016375 317 LDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 356 (390)
Q Consensus 317 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~ 356 (390)
+|+|+++++++++.+++...+.|++||++|.|+.+.|+++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999988887764
No 149
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=4.8e-17 Score=145.93 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=91.9
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhcc--CCccEE-EEeCCCCCCCCCCCCCEEEEe
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA--GECNIL-ICTDVASRGLDIPSVDMVINY 328 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~--~~~~il-v~t~~~~~G~d~~~~~~vi~~ 328 (390)
...+++|...-......+...+++.|.....++|.....+|.++++.|+. |..+|+ ++-.+.+.|+|+-+..++|.+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 44566777777777788888899999999999999999999999999986 445554 455789999999999999999
Q ss_pred cCCCCcchhhhccccccCCCCcceEEE--EeccccH
Q 016375 329 DIPTNSKDYIHRVGRTARAGRTGVAIS--LVNQYEL 362 (390)
Q Consensus 329 ~~~~~~~~~~Q~~GR~~R~~~~~~~i~--~~~~~~~ 362 (390)
|..|++.--.|+..|.+|.|++..+++ |...+..
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTv 860 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTV 860 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcH
Confidence 999999999999999999998876654 4444443
No 150
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.76 E-value=4.1e-17 Score=140.87 Aligned_cols=112 Identities=18% Similarity=0.287 Sum_probs=98.0
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccC-CccEE-EEeCCCCCCCCCCCCCEEEEec
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG-ECNIL-ICTDVASRGLDIPSVDMVINYD 329 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~il-v~t~~~~~G~d~~~~~~vi~~~ 329 (390)
...+.|||.+.-.....+.-.|.+.|..+..+.|.|++..|...++.|.+. ++.|+ ++-.+.+..+|+..+++|+..|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 456789999999999999999999999999999999999999999999975 67764 4557888899999999999999
Q ss_pred CCCCcchhhhccccccCCCCc--ceEEEEeccccHH
Q 016375 330 IPTNSKDYIHRVGRTARAGRT--GVAISLVNQYELE 363 (390)
Q Consensus 330 ~~~~~~~~~Q~~GR~~R~~~~--~~~i~~~~~~~~~ 363 (390)
+=|++..-+|...|.+|.|+. -+++.|+-++..+
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE 752 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIE 752 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhccHH
Confidence 999999999999999999965 4667777766543
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=5.3e-16 Score=149.64 Aligned_cols=74 Identities=20% Similarity=0.100 Sum_probs=62.5
Q ss_pred cCCCCCchHHHhhHHhHh----cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHH
Q 016375 26 VGWKTPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 101 (390)
|++..+||.|.+.+..+. .+.++++.+|||+|||++.+.+++.+..+.. ...++++.+.|.+-..|..++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~------~~~kIiy~sRThsQl~q~i~E 79 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP------EVRKIIYASRTHSQLEQATEE 79 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc------ccccEEEEcccchHHHHHHHH
Confidence 678778999999987765 4789999999999999999999988876532 235799999999999999999
Q ss_pred HHHh
Q 016375 102 FEAL 105 (390)
Q Consensus 102 ~~~~ 105 (390)
+++.
T Consensus 80 lk~~ 83 (705)
T TIGR00604 80 LRKL 83 (705)
T ss_pred HHhh
Confidence 9884
No 152
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.74 E-value=5.1e-18 Score=116.13 Aligned_cols=78 Identities=41% Similarity=0.722 Sum_probs=75.2
Q ss_pred HHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCC
Q 016375 271 LMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG 348 (390)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~ 348 (390)
+.|+..++++..+|++++..+|..+++.|++++..||++|+++++|+|+|++++||+++.++++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999986
No 153
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.73 E-value=2.1e-16 Score=146.00 Aligned_cols=119 Identities=21% Similarity=0.214 Sum_probs=99.2
Q ss_pred CcchhHHHHHHHh--hCCCceEEEecchhHHHHHHHHHHh----------------------cCCceeeccCCCCHHHHH
Q 016375 238 KYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRN----------------------LGQRAIPISGHMSQSKRL 293 (390)
Q Consensus 238 ~~~~~~~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~----------------------~~~~~~~~~~~~~~~~~~ 293 (390)
..+..+++.+++. .-+++.|||.++......+..+|.- .|.....++|......|.
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 3444455556553 3589999999999999888888863 145578889999999999
Q ss_pred HHHHHhccC-Cc---cEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEE
Q 016375 294 GALNKFKAG-EC---NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 356 (390)
Q Consensus 294 ~~~~~f~~~-~~---~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~ 356 (390)
.+.+.|++- +. -.||+|.+.+-|+|+-.+..||+||..|+|..-.|.+=|++|.|+..+|++|
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 999999873 22 2799999999999999999999999999999999999999999998888776
No 154
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.73 E-value=1.1e-15 Score=141.81 Aligned_cols=288 Identities=16% Similarity=0.229 Sum_probs=184.3
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (390)
.-.++.+|+|+|||.....++...+.. +..++|+++-+++|+.+.+..++..+.. ++. .+........
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~--------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv--~Y~d~~~~~i- 117 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKN--------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV--NYLDSDDYII- 117 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccC--------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce--eeeccccccc-
Confidence 458999999999997644433333221 5678999999999999999999875421 122 1111111100
Q ss_pred HHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHH-------HHHHHHHhCCCCccEEEEeecC
Q 016375 126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK-------SLDEILNVIPRMRQTYLFSATM 198 (390)
Q Consensus 126 ~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~-------~~~~~~~~~~~~~~~i~~saT~ 198 (390)
.....+-++++.++|.+.... .+.++++|||||+-.....-+.. .+..+...+...+.+|++-|+.
T Consensus 118 ---~~~~~~rLivqIdSL~R~~~~----~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 118 ---DGRPYDRLIVQIDSLHRLDGS----LLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred ---cccccCeEEEEehhhhhcccc----cccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 012367888898888775432 35668999999998665533322 2223344556667899999999
Q ss_pred chhHHHHHHHhcCCCeEEecCCccccccccceeEEecCC------------------------------------Ccchh
Q 016375 199 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA------------------------------------KYKDC 242 (390)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~ 242 (390)
.....++.....+.........++............++. .....
T Consensus 191 n~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 270 (824)
T PF02399_consen 191 NDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETT 270 (824)
T ss_pred CHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhh
Confidence 999988888876554333333333222222211111110 01112
Q ss_pred HHHHHHHhh-CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCC
Q 016375 243 YLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321 (390)
Q Consensus 243 ~~~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~ 321 (390)
....+.... .+.++-||+.+...++.+++........+.++++..+..+.+. -++++|++-|+.++.|+++..
T Consensus 271 F~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~~------W~~~~VviYT~~itvG~Sf~~ 344 (824)
T PF02399_consen 271 FFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVES------WKKYDVVIYTPVITVGLSFEE 344 (824)
T ss_pred HHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccccc------ccceeEEEEeceEEEEeccch
Confidence 222333332 5778889999999999999999999888999988766553321 367899999999999999854
Q ss_pred --CCEEEEecCC----CCcchhhhccccccCCCCcceEEEEecc
Q 016375 322 --VDMVINYDIP----TNSKDYIHRVGRTARAGRTGVAISLVNQ 359 (390)
Q Consensus 322 --~~~vi~~~~~----~~~~~~~Q~~GR~~R~~~~~~~i~~~~~ 359 (390)
.+.|+.|=.| .+..+..|++||+ |.-.....+++++.
T Consensus 345 ~HF~~~f~yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~ 387 (824)
T PF02399_consen 345 KHFDSMFAYVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDA 387 (824)
T ss_pred hhceEEEEEecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEec
Confidence 5556555333 3344679999998 44344566666654
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=1.7e-15 Score=143.66 Aligned_cols=167 Identities=18% Similarity=0.168 Sum_probs=112.0
Q ss_pred EEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHh--hCCCceEEEecchhHHHH
Q 016375 191 TYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRL 268 (390)
Q Consensus 191 ~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvf~~~~~~~~~ 268 (390)
+-+||+|......++...+-.....+ +...+....-.....+.....+...+...+.+ ..+.|+||-+.|++..+.
T Consensus 566 LsGMTGTA~tea~Ef~~IY~L~Vv~I--PTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~ 643 (1112)
T PRK12901 566 LAGMTGTAETEAGEFWDIYKLDVVVI--PTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISEL 643 (1112)
T ss_pred hcccCCCCHHHHHHHHHHhCCCEEEC--CCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHH
Confidence 56666666555555444443232222 22222111111222233334444444444432 378999999999999999
Q ss_pred HHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCC---CC-----CEEEEecCCCCcchhhhc
Q 016375 269 LALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP---SV-----DMVINYDIPTNSKDYIHR 340 (390)
Q Consensus 269 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~---~~-----~~vi~~~~~~~~~~~~Q~ 340 (390)
+++.|...+++..+++......+-+.+-+.-+.| .|.|||+++++|.|+. .+ =+||....+.|..--.|.
T Consensus 644 lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QL 721 (1112)
T PRK12901 644 LSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQL 721 (1112)
T ss_pred HHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHH
Confidence 9999999999988888876655544444443333 3799999999999984 11 267778888999999999
Q ss_pred cccccCCCCcceEEEEecccc
Q 016375 341 VGRTARAGRTGVAISLVNQYE 361 (390)
Q Consensus 341 ~GR~~R~~~~~~~i~~~~~~~ 361 (390)
.||+||+|.+|.+-.|++-++
T Consensus 722 rGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 722 RGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred hcccccCCCCCcceEEEEccc
Confidence 999999999999988888654
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.66 E-value=5.4e-14 Score=132.39 Aligned_cols=284 Identities=11% Similarity=0.032 Sum_probs=162.1
Q ss_pred EEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh
Q 016375 49 IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 128 (390)
Q Consensus 49 li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (390)
+..+.+|||||..|+-.+.+.+. .|+.+|+++|...|..|+.+.++..... ..+..++++....++...
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~---------~Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR---------AGRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRR 232 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH---------cCCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHH
Confidence 33444699999998765555443 5778999999999999999999876542 467889998877765554
Q ss_pred c----CCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccc------cHHHHHHHHHhCCCCccEEEEeecC
Q 016375 129 L----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD------FEKSLDEILNVIPRMRQTYLFSATM 198 (390)
Q Consensus 129 ~----~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~------~~~~~~~~~~~~~~~~~~i~~saT~ 198 (390)
| .++.+|+|+|... -...+.++++||+||-|..+..+ ..+.+....... ....+++-||||
T Consensus 233 w~~~~~G~~~IViGtRSA--------vFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~-~~~~lvLgSaTP 303 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSA--------VFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ-HGCALLIGGHAR 303 (665)
T ss_pred HHHHhCCCCcEEEEccee--------EEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH-cCCcEEEECCCC
Confidence 4 4568999999533 33457889999999999654422 112232223332 334599999997
Q ss_pred chhHHHHHHHhcCCCeEEecCCcc--ccccccceeEEe----c-----CC--CcchhHHHHHHHhhCCCceEEEecchhH
Q 016375 199 TKKVKKLQRACLKNPVKIEAASKY--STVDTLKQQYRF----V-----PA--KYKDCYLVYILTEVSASSTMVFTRTCDA 265 (390)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~-----~~--~~~~~~~~~~~~~~~~~~~lvf~~~~~~ 265 (390)
+-..-..... +....+...... ...+.+. .... . .. ..-...+..+.+....+++|+|.|.+..
T Consensus 304 Sles~~~~~~--g~~~~~~~~~~~~~~~~P~v~-~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGy 380 (665)
T PRK14873 304 TAEAQALVES--GWAHDLVAPRPVVRARAPRVR-ALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGY 380 (665)
T ss_pred CHHHHHHHhc--CcceeeccccccccCCCCeEE-EEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCC
Confidence 7654433221 122211111110 0111110 0000 0 00 0111223333333333389999887666
Q ss_pred HHHHHH-HHHh------cCCc----------eeeccCC-------------------CC------------------HHH
Q 016375 266 TRLLAL-MLRN------LGQR----------AIPISGH-------------------MS------------------QSK 291 (390)
Q Consensus 266 ~~~l~~-~l~~------~~~~----------~~~~~~~-------------------~~------------------~~~ 291 (390)
+..+.+ .+.. ++.. .+.++|. .. ..+
T Consensus 381 ap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d 460 (665)
T PRK14873 381 VPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG 460 (665)
T ss_pred CCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC
Confidence 544322 1110 0000 0000000 00 012
Q ss_pred HHHHHHHhccCCccEEEEeC----CCCCCCCCCCCCEEEEecCC--C----------CcchhhhccccccCCCCcceEEE
Q 016375 292 RLGALNKFKAGECNILICTD----VASRGLDIPSVDMVINYDIP--T----------NSKDYIHRVGRTARAGRTGVAIS 355 (390)
Q Consensus 292 ~~~~~~~f~~~~~~ilv~t~----~~~~G~d~~~~~~vi~~~~~--~----------~~~~~~Q~~GR~~R~~~~~~~i~ 355 (390)
++.+++.|. ++.+|||+|+ ++. +++..|++++.. . ....+.|..||+||..++|.+++
T Consensus 461 ~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~i 534 (665)
T PRK14873 461 GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVV 534 (665)
T ss_pred hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEE
Confidence 345677786 5899999999 554 356777776653 1 22345899999999988899988
Q ss_pred Eecccc
Q 016375 356 LVNQYE 361 (390)
Q Consensus 356 ~~~~~~ 361 (390)
..+++.
T Consensus 535 q~~p~~ 540 (665)
T PRK14873 535 VAESSL 540 (665)
T ss_pred EeCCCC
Confidence 765443
No 157
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.64 E-value=1.8e-14 Score=137.33 Aligned_cols=334 Identities=18% Similarity=0.127 Sum_probs=180.6
Q ss_pred HHHHhcCCCCCchHHHhhHHhHhc------CCC--EEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCH
Q 016375 21 EACENVGWKTPSKIQAEAIPHALE------GKD--LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (390)
Q Consensus 21 ~~l~~~g~~~~~~~Q~~~~~~i~~------~~~--~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 92 (390)
+.++..--..-+.+|..|++.+.. .+. ++-.|.||+|||++=+-.|. .+.. ...+.+..|....+
T Consensus 399 k~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImy-aLsd------~~~g~RfsiALGLR 471 (1110)
T TIGR02562 399 KYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMY-ALRD------DKQGARFAIALGLR 471 (1110)
T ss_pred hhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHH-HhCC------CCCCceEEEEcccc
Confidence 334333333468899999988764 122 55568999999987443332 2211 12566778888888
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEecCCchH-------------------------------------------HHHHhc
Q 016375 93 ELAIQISEQFEALGSGISLRCAVLVGGVDMM-------------------------------------------QQTLAL 129 (390)
Q Consensus 93 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~ 129 (390)
.|..|+-..+++-..-.+-..+++.|+.... .....+
T Consensus 472 TLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l 551 (1110)
T TIGR02562 472 SLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRL 551 (1110)
T ss_pred ceeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhh
Confidence 8888877777654332223333333322111 000000
Q ss_pred C--------CCCCEEEeCCchhHHHhhcC--CCccCC----CccEEEEehhhhhcccccHHHHHHHHHhCC-CCccEEEE
Q 016375 130 G--------KRPHIVVATPGRLMDHLTNT--KGFSLG----TLKYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLF 194 (390)
Q Consensus 130 ~--------~~~~i~i~t~~~l~~~~~~~--~~~~~~----~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~i~~ 194 (390)
. -.+.++|+|+++++...... ....+. .-+.+||||+|-+-... ...+..++.-.. -..++++|
T Consensus 552 ~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLm 630 (1110)
T TIGR02562 552 SLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLS 630 (1110)
T ss_pred ccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEE
Confidence 0 04679999999998766322 222111 12579999999443333 233444443221 12359999
Q ss_pred eecCchhHHHHHHH-h----------cCCC---eEEe--cCCccc---------------------------cccccce-
Q 016375 195 SATMTKKVKKLQRA-C----------LKNP---VKIE--AASKYS---------------------------TVDTLKQ- 230 (390)
Q Consensus 195 saT~~~~~~~~~~~-~----------~~~~---~~~~--~~~~~~---------------------------~~~~~~~- 230 (390)
|||+++........ + .+.+ ..+. -..+.. .......
T Consensus 631 SATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~ 710 (1110)
T TIGR02562 631 SATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRL 710 (1110)
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccce
Confidence 99999876542222 1 1111 0000 000000 0000000
Q ss_pred -eEEecCCCc-----chhHHHHHH--------Hhh------CCCc---eEEEecchhHHHHHHHHHHhc----C--Ccee
Q 016375 231 -QYRFVPAKY-----KDCYLVYIL--------TEV------SASS---TMVFTRTCDATRLLALMLRNL----G--QRAI 281 (390)
Q Consensus 231 -~~~~~~~~~-----~~~~~~~~~--------~~~------~~~~---~lvf~~~~~~~~~l~~~l~~~----~--~~~~ 281 (390)
....++... ....+...+ ..+ .+++ .+|-.++++.+-.++..|-.. + +...
T Consensus 711 a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~ 790 (1110)
T TIGR02562 711 AELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLC 790 (1110)
T ss_pred EEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEE
Confidence 111111111 111111111 111 1222 477777777776676666543 2 3477
Q ss_pred eccCCCCHHHHHHHHHHh----------------------cc----CCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcc
Q 016375 282 PISGHMSQSKRLGALNKF----------------------KA----GECNILICTDVASRGLDIPSVDMVINYDIPTNSK 335 (390)
Q Consensus 282 ~~~~~~~~~~~~~~~~~f----------------------~~----~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~ 335 (390)
.||+......|..+.+.+ .+ +...|+|+|+.++.|+|+ +++.+|. .+.+..
T Consensus 791 ~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~ 867 (1110)
T TIGR02562 791 CYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMR 867 (1110)
T ss_pred EecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHH
Confidence 889998777766555442 12 356799999999999998 6777653 356788
Q ss_pred hhhhccccccCCCCc--ceEEEEeccccHHHH
Q 016375 336 DYIHRVGRTARAGRT--GVAISLVNQYELEWY 365 (390)
Q Consensus 336 ~~~Q~~GR~~R~~~~--~~~i~~~~~~~~~~~ 365 (390)
+.+|+.||+.|.+.. +..-+++-..+...+
T Consensus 868 sliQ~aGR~~R~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 868 SIIQLAGRVNRHRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred HHHHHhhcccccccCCCCCCcEEEeHhHHHHh
Confidence 899999999998743 233444445555555
No 158
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.63 E-value=7.4e-14 Score=137.25 Aligned_cols=309 Identities=17% Similarity=0.113 Sum_probs=170.5
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (390)
+..+|++.+|||||++... +...+.+. ...+.+++|+.++.|-.|+.+.++.+........ ...+....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSEL 342 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHH
Confidence 4699999999999988543 44444443 2677899999999999999999999875432221 22333332
Q ss_pred HHhcC-CCCCEEEeCCchhHHHhhcCCCc-cCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHH
Q 016375 126 TLALG-KRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVK 203 (390)
Q Consensus 126 ~~~~~-~~~~i~i~t~~~l~~~~~~~~~~-~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~ 203 (390)
...+. ....|+|+|.++|.......... .-..--+||+||||+.-.......+ ...+++ ...+++|+||...-.
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~---~~~~~~-a~~~gFTGTPi~~~d 418 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLL---KKALKK-AIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHHH---HHHhcc-ceEEEeeCCcccccc
Confidence 22333 24689999999998766553111 1223347999999975443333333 444444 449999999855333
Q ss_pred HH-HHHhcCCCeEEecCCcccccccc-ceeEEec-C-----CC-------------------------------------
Q 016375 204 KL-QRACLKNPVKIEAASKYSTVDTL-KQQYRFV-P-----AK------------------------------------- 238 (390)
Q Consensus 204 ~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-----~~------------------------------------- 238 (390)
.. ....++.+............... ...+... . ..
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 22 12222222211111111000000 0000000 0 00
Q ss_pred -cch----hHHHHHHH-hhCCCceEEEecchhHHHHHHHHHHhcCCc----------eeecc------C------CCCHH
Q 016375 239 -YKD----CYLVYILT-EVSASSTMVFTRTCDATRLLALMLRNLGQR----------AIPIS------G------HMSQS 290 (390)
Q Consensus 239 -~~~----~~~~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~----------~~~~~------~------~~~~~ 290 (390)
... .....+.. ...+.++++.+.+...+..+.+........ +..+. . .....
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 578 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLKD 578 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHHHH
Confidence 000 00001111 223567788888877554454443322100 00000 0 01112
Q ss_pred HHHHHHHH--hccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCC---Cc-ceEEEEeccccHHH
Q 016375 291 KRLGALNK--FKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG---RT-GVAISLVNQYELEW 364 (390)
Q Consensus 291 ~~~~~~~~--f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~---~~-~~~i~~~~~~~~~~ 364 (390)
........ ..+...++||.++++-+|||.|.+.+++ +|.|.-....+|++.|+.|.- ++ |.++.|.. ..+.
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g--l~e~ 655 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG--LKEA 655 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc--hHHH
Confidence 22333444 3346799999999999999999999998 455566778999999999983 22 55566655 4444
Q ss_pred HHHHHHHh
Q 016375 365 YLQIEKLI 372 (390)
Q Consensus 365 ~~~~~~~~ 372 (390)
+...-+.|
T Consensus 656 l~~Al~~Y 663 (962)
T COG0610 656 LKKALKLY 663 (962)
T ss_pred HHHHHHHh
Confidence 44444443
No 159
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.63 E-value=8.2e-13 Score=116.80 Aligned_cols=287 Identities=21% Similarity=0.214 Sum_probs=197.2
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCC-C----------ce--------EEEEecCCchHHHHHh-------------
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGI-S----------LR--------CAVLVGGVDMMQQTLA------------- 128 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~-~----------~~--------~~~~~~~~~~~~~~~~------------- 128 (390)
..++|||++|++..|-.+.+.+.++.... . +. ...-.........+..
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 56789999999999999999887765441 0 00 0000000000001100
Q ss_pred ------------cCCCCCEEEeCCchhHHHhhc----CCCcc-CCCccEEEEehhhhhcccccHHHHHHHHHhC---CC-
Q 016375 129 ------------LGKRPHIVVATPGRLMDHLTN----TKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVI---PR- 187 (390)
Q Consensus 129 ------------~~~~~~i~i~t~~~l~~~~~~----~~~~~-~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~---~~- 187 (390)
....+||+|++|=.|...+.. ...++ ++.+.++|+|.+|.+...+|. ++..+++.+ |.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~-Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWE-HVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHH-HHHHHHHHhccCCCC
Confidence 012789999999999887774 12222 788999999999976665554 455554444 22
Q ss_pred --------------------CccEEEEeecCchhHHHHHHHhcCCC---eEEecCCc-----cccccccceeEEecCCCc
Q 016375 188 --------------------MRQTYLFSATMTKKVKKLQRACLKNP---VKIEAASK-----YSTVDTLKQQYRFVPAKY 239 (390)
Q Consensus 188 --------------------~~~~i~~saT~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 239 (390)
.+|.+++|+...+....+....+.+. ..+..... ......+.+.+...+...
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 14899999999998888877755442 12222222 123334455555443322
Q ss_pred chhH-----------HHHHHH-hhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEE
Q 016375 240 KDCY-----------LVYILT-EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307 (390)
Q Consensus 240 ~~~~-----------~~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~il 307 (390)
.... +.-.+. ......+|||++|.-+--.+.++|++.++....++..++..+...+-..|.+|+..+|
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 1111 111122 3456789999999999999999999999999999999999999999999999999999
Q ss_pred EEeC--CCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCC------CcceEEEEeccccHHHHHHH
Q 016375 308 ICTD--VASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG------RTGVAISLVNQYELEWYLQI 368 (390)
Q Consensus 308 v~t~--~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~------~~~~~i~~~~~~~~~~~~~~ 368 (390)
+.|. -.-.-..+.+++.||+|++|..+.-|...++-..... ....|.++++..+.-.++.|
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 9997 4445677889999999999999988877775554433 25799999999988777766
No 160
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.61 E-value=2.4e-15 Score=104.24 Aligned_cols=81 Identities=47% Similarity=0.820 Sum_probs=76.9
Q ss_pred HHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCC
Q 016375 268 LLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARA 347 (390)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 347 (390)
.+++.|+..+..+..+|+.+++.++..+++.|+++...++++|+++++|+|+|+++.|++++.+++...+.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 016375 348 G 348 (390)
Q Consensus 348 ~ 348 (390)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.61 E-value=8.8e-14 Score=139.76 Aligned_cols=323 Identities=20% Similarity=0.198 Sum_probs=206.0
Q ss_pred CCCchHHHhhHHhHhc-----CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHH
Q 016375 29 KTPSKIQAEAIPHALE-----GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~-----~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 103 (390)
..++++|.+.++++.. +.+.++..++|.|||+..+..+...... . ....+.++++||. ++..+|.+++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~-~----~~~~~~~liv~p~-s~~~nw~~e~~ 410 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLES-I----KVYLGPALIVVPA-SLLSNWKREFE 410 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhc-c----cCCCCCeEEEecH-HHHHHHHHHHh
Confidence 4689999999988662 5689999999999998765544441111 1 1124578999996 66699999998
Q ss_pred HhccCCCceEEEEecCCch----HHHHHhcCC-----CCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccccc
Q 016375 104 ALGSGISLRCAVLVGGVDM----MQQTLALGK-----RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDF 174 (390)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~ 174 (390)
++...... +...+|.... ......... ..+++++|++.+.........+.-..++.+|+||+|.+.+..
T Consensus 411 k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~- 488 (866)
T COG0553 411 KFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ- 488 (866)
T ss_pred hhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-
Confidence 88776443 6667776642 222222222 279999999999884322222334568899999999744422
Q ss_pred HHHHHHHHHhCCCCccEEEEeecCch-hHHHHHHHhc--CCCe-------------------------------------
Q 016375 175 EKSLDEILNVIPRMRQTYLFSATMTK-KVKKLQRACL--KNPV------------------------------------- 214 (390)
Q Consensus 175 ~~~~~~~~~~~~~~~~~i~~saT~~~-~~~~~~~~~~--~~~~------------------------------------- 214 (390)
......+. .++... .+.+|+||-. .+.++....- ..|.
T Consensus 489 s~~~~~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 566 (866)
T COG0553 489 SSEGKALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLR 566 (866)
T ss_pred hHHHHHHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHH
Confidence 22222322 222222 2555555411 1100000000 0000
Q ss_pred ----------------EE-ecCC----------------------c----------------------------------
Q 016375 215 ----------------KI-EAAS----------------------K---------------------------------- 221 (390)
Q Consensus 215 ----------------~~-~~~~----------------------~---------------------------------- 221 (390)
.. ..+. .
T Consensus 567 ~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 646 (866)
T COG0553 567 KLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLT 646 (866)
T ss_pred HHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHH
Confidence 00 0000 0
Q ss_pred ----cccccccce-e-EEe---------------------cCCC-cchhHHHHHH---HhhCCC--ceEEEecchhHHHH
Q 016375 222 ----YSTVDTLKQ-Q-YRF---------------------VPAK-YKDCYLVYIL---TEVSAS--STMVFTRTCDATRL 268 (390)
Q Consensus 222 ----~~~~~~~~~-~-~~~---------------------~~~~-~~~~~~~~~~---~~~~~~--~~lvf~~~~~~~~~ 268 (390)
....+.... . ... .... .+...+..++ ....+. ++++|++.......
T Consensus 647 ~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~i 726 (866)
T COG0553 647 RLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDL 726 (866)
T ss_pred HHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHH
Confidence 000000000 0 000 0000 3445555555 223455 89999999999999
Q ss_pred HHHHHHhcCCceeeccCCCCHHHHHHHHHHhccC--CccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccC
Q 016375 269 LALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG--ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTAR 346 (390)
Q Consensus 269 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~--~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R 346 (390)
+...+...+.....++|.++...|...++.|.++ ..-+++++.+.+.|+|+..+++||++|+.|++....|+..|++|
T Consensus 727 l~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~R 806 (866)
T COG0553 727 LEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHR 806 (866)
T ss_pred HHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHH
Confidence 9999999998899999999999999999999986 34456677899999999999999999999999999999999999
Q ss_pred CCCcce--EEEEecccc
Q 016375 347 AGRTGV--AISLVNQYE 361 (390)
Q Consensus 347 ~~~~~~--~i~~~~~~~ 361 (390)
.|++.. ++.++..+.
T Consensus 807 igQ~~~v~v~r~i~~~t 823 (866)
T COG0553 807 IGQKRPVKVYRLITRGT 823 (866)
T ss_pred hcCcceeEEEEeecCCc
Confidence 997754 455566555
No 162
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.57 E-value=3.6e-14 Score=124.32 Aligned_cols=157 Identities=22% Similarity=0.174 Sum_probs=97.0
Q ss_pred HHHhhHHhHh-------------cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHH
Q 016375 34 IQAEAIPHAL-------------EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 100 (390)
Q Consensus 34 ~Q~~~~~~i~-------------~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 100 (390)
||.+++..+. ....+++..++|+|||.+++..+. .+..... ......+||+||. ++..||..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~---~~~~~~~LIv~P~-~l~~~W~~ 75 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFP---QRGEKKTLIVVPS-SLLSQWKE 75 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCT---TSS-S-EEEEE-T-TTHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccc---cccccceeEeecc-chhhhhhh
Confidence 6888887763 235799999999999987654333 3322111 1122359999999 88899999
Q ss_pred HHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhH-----HHhhcCCCccCCCccEEEEehhhhhcccccH
Q 016375 101 QFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLM-----DHLTNTKGFSLGTLKYLVLDEADRLLNDDFE 175 (390)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~-----~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~ 175 (390)
++.++......++..+.+...............+++|+|++.+. ..... +....+++||+||+|.+-+.. .
T Consensus 76 E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~~~~vIvDEaH~~k~~~-s 151 (299)
T PF00176_consen 76 EIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED---LKQIKWDRVIVDEAHRLKNKD-S 151 (299)
T ss_dssp HHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSEEEEEEETTGGGGTTTT-S
T ss_pred hhccccccccccccccccccccccccccccccceeeeccccccccccccccccc---cccccceeEEEeccccccccc-c
Confidence 99999865566777777776333333344567899999999998 21111 112348999999999774332 3
Q ss_pred HHHHHHHHhCCCCccEEEEeecCchh
Q 016375 176 KSLDEILNVIPRMRQTYLFSATMTKK 201 (390)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~saT~~~~ 201 (390)
.....+.. +. ....+++||||..+
T Consensus 152 ~~~~~l~~-l~-~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 152 KRYKALRK-LR-ARYRWLLSGTPIQN 175 (299)
T ss_dssp HHHHHHHC-CC-ECEEEEE-SS-SSS
T ss_pred cccccccc-cc-cceEEeeccccccc
Confidence 34444444 54 45589999998653
No 163
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.56 E-value=4.1e-13 Score=128.17 Aligned_cols=308 Identities=16% Similarity=0.204 Sum_probs=206.3
Q ss_pred CchHHHhhHHhHhc-CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHH-HhccC
Q 016375 31 PSKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE-ALGSG 108 (390)
Q Consensus 31 ~~~~Q~~~~~~i~~-~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~ 108 (390)
..+.|.+.++.+.+ ++++++.+|+|||||.++-++++. .....+++++.|.-.++...++.+. ++...
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 47888888888876 468999999999999987666654 2266789999999999888777765 46666
Q ss_pred CCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHH------HHHHHH
Q 016375 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK------SLDEIL 182 (390)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~------~~~~~~ 182 (390)
.+..+..+.|......+.. ...+|+|+||+++-.. . ..+..++.|.||.|.+.+ ..+. .++.+.
T Consensus 1214 ~G~~~~~l~ge~s~~lkl~---~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia 1283 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDLKLL---QKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIA 1283 (1674)
T ss_pred cCceEEecCCccccchHHh---hhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHH
Confidence 7888888888887665443 3578999999998665 1 466789999999996553 2221 155555
Q ss_pred HhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCc--------chhHHHHHHHhh-CC
Q 016375 183 NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY--------KDCYLVYILTEV-SA 253 (390)
Q Consensus 183 ~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~ 253 (390)
..+.++.+++.+|....+..+- ..+.....++........+ +......+.... .......+.+.. .+
T Consensus 1284 ~q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~P-l~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~ 1359 (1674)
T KOG0951|consen 1284 SQLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVP-LEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNR 1359 (1674)
T ss_pred HHHHhheeEEEeehhhccchhh---ccccccceeecCcccCCCc-eeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCC
Confidence 6666666788888776654332 3333444444444333222 112222222111 111222222322 56
Q ss_pred CceEEEecchhHHHHHHHHHHh----------------------cCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC
Q 016375 254 SSTMVFTRTCDATRLLALMLRN----------------------LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 311 (390)
Q Consensus 254 ~~~lvf~~~~~~~~~l~~~l~~----------------------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~ 311 (390)
.+.+||+++++.+..++.-+-. ...+..+-|.+++..+...+-.-|..|.+.++|...
T Consensus 1360 k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~ 1439 (1674)
T KOG0951|consen 1360 KPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSR 1439 (1674)
T ss_pred CCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEc
Confidence 7899999999998777654421 122334447888888888888899999999988775
Q ss_pred CCCCCCCCCCCCEEEEecC-----------CCCcchhhhccccccCCCCcceEEEEeccccHHHHHH
Q 016375 312 VASRGLDIPSVDMVINYDI-----------PTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQ 367 (390)
Q Consensus 312 ~~~~G~d~~~~~~vi~~~~-----------~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~ 367 (390)
- -.|+-. ..+.||..+. +.+.....|+.|++.| .|+|+++......+.++.
T Consensus 1440 ~-~~~~~~-~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1440 D-CYGTKL-KAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred c-cccccc-cceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHH
Confidence 4 455555 4556665442 3566688999999998 468999988777665543
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.55 E-value=5.4e-14 Score=103.38 Aligned_cols=136 Identities=19% Similarity=0.180 Sum_probs=81.6
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchH
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (390)
+++-.++..+||+|||.-.+.-++....+ .+.++|++.|++.++.+..+.|+.. ++.+.. .....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t--~~~~~- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHT--NARMR- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTS----SEEEES--TTSS--
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcC----CcccCc--eeeec-
Confidence 45567889999999998766556555555 6788999999999999988887543 233221 11111
Q ss_pred HHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccH---HHHHHHHHhCCCCccEEEEeecCch
Q 016375 124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE---KSLDEILNVIPRMRQTYLFSATMTK 200 (390)
Q Consensus 124 ~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~---~~~~~~~~~~~~~~~~i~~saT~~~ 200 (390)
......-|-++|+..+.+.+.+. ....++++||+||+| ..+...- ..+... .... ...+++|||||+.
T Consensus 68 ----~~~g~~~i~vMc~at~~~~~~~p--~~~~~yd~II~DEcH-~~Dp~sIA~rg~l~~~-~~~g-~~~~i~mTATPPG 138 (148)
T PF07652_consen 68 ----THFGSSIIDVMCHATYGHFLLNP--CRLKNYDVIIMDECH-FTDPTSIAARGYLREL-AESG-EAKVIFMTATPPG 138 (148)
T ss_dssp -------SSSSEEEEEHHHHHHHHHTS--SCTTS-SEEEECTTT---SHHHHHHHHHHHHH-HHTT-S-EEEEEESS-TT
T ss_pred ----cccCCCcccccccHHHHHHhcCc--ccccCccEEEEeccc-cCCHHHHhhheeHHHh-hhcc-CeeEEEEeCCCCC
Confidence 12245678899999988877663 346889999999999 4442211 112221 2222 2359999999987
Q ss_pred hHH
Q 016375 201 KVK 203 (390)
Q Consensus 201 ~~~ 203 (390)
..+
T Consensus 139 ~~~ 141 (148)
T PF07652_consen 139 SED 141 (148)
T ss_dssp ---
T ss_pred CCC
Confidence 553
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.50 E-value=1.2e-12 Score=122.79 Aligned_cols=315 Identities=18% Similarity=0.168 Sum_probs=194.4
Q ss_pred CchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCC
Q 016375 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS 110 (390)
Q Consensus 31 ~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 110 (390)
++++-.+.+..+.-+...+..+-||-|||+++.+|+.-..+ .|+.+.++....-|+.--++++..+...++
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL---------~gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL---------AGKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhc---------CCCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 35555667777777788999999999999998888765544 566688999999999888888888877788
Q ss_pred ceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCC-----CccCCCccEEEEehhhhhcc-------------
Q 016375 111 LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLN------------- 171 (390)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~-----~~~~~~~~~iIiDE~H~~~~------------- 171 (390)
+.+.+...+.....+...+ .+||..+|..-| ++++..+- ......+.+.|+||++.+.=
T Consensus 150 lsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 9988888777665555443 589999997544 22222211 01134578888898883210
Q ss_pred ---cccHHHHHHHHHhCCCC------------------------------------------------------------
Q 016375 172 ---DDFEKSLDEILNVIPRM------------------------------------------------------------ 188 (390)
Q Consensus 172 ---~~~~~~~~~~~~~~~~~------------------------------------------------------------ 188 (390)
..+...+..+...+...
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 00111111111111000
Q ss_pred ---------------------------------------------------------ccEEEEeecCchhHHHHHHHhcC
Q 016375 189 ---------------------------------------------------------RQTYLFSATMTKKVKKLQRACLK 211 (390)
Q Consensus 189 ---------------------------------------------------------~~~i~~saT~~~~~~~~~~~~~~ 211 (390)
+.+.+||+|.......+...+..
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 02444444444433333333322
Q ss_pred CCeEEecCCccccccccceeEEecCCCcchhHHHHHHH--hhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCH
Q 016375 212 NPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQ 289 (390)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 289 (390)
....+.. ..+....-.....+.....+.......+. +..+.|+||-+.+++.++.+.+.|.+.+++..+++.....
T Consensus 388 ~vv~iPT--nrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~ 465 (822)
T COG0653 388 DVVVIPT--NRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHA 465 (822)
T ss_pred ceeeccC--CCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHH
Confidence 2222211 11111111112222233333444433333 3478999999999999999999999999998888877665
Q ss_pred HHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCC-----------EEEEecCCCCcchhhhccccccCCCCcceEEEEec
Q 016375 290 SKRLGALNKFKAGECNILICTDVASRGLDIPSVD-----------MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVN 358 (390)
Q Consensus 290 ~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~-----------~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~ 358 (390)
.+-+.+-+.-+.| .|-|+|++++.|.|+.=-. .||-.....|-.---|.-||+||+|.+|..-.|++
T Consensus 466 ~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 466 REAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred HHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhh
Confidence 5544444332222 3789999999999983111 34444444454445699999999998887777766
Q ss_pred cc
Q 016375 359 QY 360 (390)
Q Consensus 359 ~~ 360 (390)
-.
T Consensus 544 le 545 (822)
T COG0653 544 LE 545 (822)
T ss_pred hH
Confidence 43
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.41 E-value=3.5e-12 Score=109.37 Aligned_cols=76 Identities=26% Similarity=0.150 Sum_probs=59.1
Q ss_pred cCCCCCchHHHhhHHhH----hcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHH
Q 016375 26 VGWKTPSKIQAEAIPHA----LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i----~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 101 (390)
|+| ++||.|.+.+..+ .++.++++.+|||+|||++++.|++.++....... .+.+++|.+++.++.+|...+
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHHHHH
Confidence 677 4699999966554 46789999999999999999999987766432110 234799999999998888777
Q ss_pred HHHh
Q 016375 102 FEAL 105 (390)
Q Consensus 102 ~~~~ 105 (390)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7665
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.41 E-value=3.5e-12 Score=109.37 Aligned_cols=76 Identities=26% Similarity=0.150 Sum_probs=59.1
Q ss_pred cCCCCCchHHHhhHHhH----hcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHH
Q 016375 26 VGWKTPSKIQAEAIPHA----LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i----~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 101 (390)
|+| ++||.|.+.+..+ .++.++++.+|||+|||++++.|++.++....... .+.+++|.+++.++.+|...+
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHHHHH
Confidence 677 4699999966554 46789999999999999999999987766432110 234799999999998888777
Q ss_pred HHHh
Q 016375 102 FEAL 105 (390)
Q Consensus 102 ~~~~ 105 (390)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7665
No 168
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.40 E-value=1.9e-11 Score=111.66 Aligned_cols=107 Identities=19% Similarity=0.251 Sum_probs=90.5
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCCc------------------eeeccCCCCHHHHHHHHHHhccC---CccEEEEe
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQR------------------AIPISGHMSQSKRLGALNKFKAG---ECNILICT 310 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~f~~~---~~~ilv~t 310 (390)
.+.++|+|..+......+.+.|.+..++ ...++|.++..+|+..++.|++. .+-++++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 3678999999999999899999875222 34567888889999999999873 23478889
Q ss_pred CCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEec
Q 016375 311 DVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVN 358 (390)
Q Consensus 311 ~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~ 358 (390)
.+...|+|+-.+..+++++..|++..-.|++-|+.|.|++.+|++|=-
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 999999999898999999999999999999999999999988877654
No 169
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=6.4e-11 Score=103.94 Aligned_cols=340 Identities=22% Similarity=0.264 Sum_probs=210.2
Q ss_pred CCCCchHHHhhHHhHhcCCCEEE-EcCCCCch--hHHhHHHHHHHHHHHHhc----------------------CCCCCC
Q 016375 28 WKTPSKIQAEAIPHALEGKDLIG-LAQTGSGK--TGAFALPILQALLEIAEN----------------------QRTVPA 82 (390)
Q Consensus 28 ~~~~~~~Q~~~~~~i~~~~~~li-~~~tG~GK--T~~~~~~~~~~~~~~~~~----------------------~~~~~~ 82 (390)
-..+++.|.+++..+.+.++++. ....+.|+ +..+++.++..+++.... ......
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 34589999999998888877543 33344555 345677777777753211 001246
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHhccCCCce-EE------------------------------EEecCCchH--------
Q 016375 83 FFACVLSPTRELAIQISEQFEALGSGISLR-CA------------------------------VLVGGVDMM-------- 123 (390)
Q Consensus 83 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~-~~------------------------------~~~~~~~~~-------- 123 (390)
++|||+||+++-|..+...+..+..+.+-. .. ++.|.++..
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 789999999999999999887763332210 00 001111000
Q ss_pred HHHH---hcCCCCCEEEeCCchhHHHhhcCC----Ccc-CCCccEEEEehhhhhcccccHHHHHHHHHhC---CCC----
Q 016375 124 QQTL---ALGKRPHIVVATPGRLMDHLTNTK----GFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVI---PRM---- 188 (390)
Q Consensus 124 ~~~~---~~~~~~~i~i~t~~~l~~~~~~~~----~~~-~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~---~~~---- 188 (390)
.+.. ......||+||+|-.|.-.+.+.. .++ ++.+.++|||.+|-+....|. .+..++..+ |..
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccCC
Confidence 0000 012378999999999887776321 122 677899999999988776665 455554444 322
Q ss_pred -----------------ccEEEEeecCchhHHHHHHHhcCCC---eEEecCCcccccccc----ceeEEecC----CCcc
Q 016375 189 -----------------RQTYLFSATMTKKVKKLQRACLKNP---VKIEAASKYSTVDTL----KQQYRFVP----AKYK 240 (390)
Q Consensus 189 -----------------~~~i~~saT~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~----~~~~ 240 (390)
+|.+++|+-..+....+...++.+. .............++ .+.+.... ...-
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 2566666666555554444444322 111111111011111 11111000 1111
Q ss_pred hhHHHHHH-------HhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC--
Q 016375 241 DCYLVYIL-------TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-- 311 (390)
Q Consensus 241 ~~~~~~~~-------~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-- 311 (390)
......+. .......+||+.|+.-.--++.+++++..+....++...+.......-+.|..|...+|+.|.
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 11111111 122345689999999999999999999999888888888888888888999999999999997
Q ss_pred CCCCCCCCCCCCEEEEecCCCCcchh---hhccccccCCC----CcceEEEEeccccHHHHHHH
Q 016375 312 VASRGLDIPSVDMVINYDIPTNSKDY---IHRVGRTARAG----RTGVAISLVNQYELEWYLQI 368 (390)
Q Consensus 312 ~~~~G~d~~~~~~vi~~~~~~~~~~~---~Q~~GR~~R~~----~~~~~i~~~~~~~~~~~~~~ 368 (390)
-.-.-.++.+++.||+|.+|..|.-| +.+.+|..-.| ....|.++++.++.-.+..+
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 34456888999999999999988766 44455544333 23589999999887655544
No 170
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=99.13 E-value=3.7e-09 Score=98.36 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=57.1
Q ss_pred CCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCC--Ccc-----------eEEEEeccccHHHHHHH
Q 016375 302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG--RTG-----------VAISLVNQYELEWYLQI 368 (390)
Q Consensus 302 ~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~--~~~-----------~~i~~~~~~~~~~~~~~ 368 (390)
...++|.+..++.+|||-|++-+++-+....|..+-.|.+||+.|.. +.| .-.++++..+.+.+..+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 34779999999999999999999999999999999999999999972 222 23456677777777777
Q ss_pred HHHh
Q 016375 369 EKLI 372 (390)
Q Consensus 369 ~~~~ 372 (390)
.+-.
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 6544
No 171
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=99.12 E-value=2.1e-07 Score=85.02 Aligned_cols=105 Identities=14% Similarity=0.174 Sum_probs=74.6
Q ss_pred CCceEEEecchhHHHHHHHHHHhcCCc-------eeeccCCCCHHHHHHHHHHhc----cCCccEEEEe--CCCCCCCCC
Q 016375 253 ASSTMVFTRTCDATRLLALMLRNLGQR-------AIPISGHMSQSKRLGALNKFK----AGECNILICT--DVASRGLDI 319 (390)
Q Consensus 253 ~~~~lvf~~~~~~~~~l~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~f~----~~~~~ilv~t--~~~~~G~d~ 319 (390)
.+.+++|.+|.+....+.+.++..|+. ...+....+ -+++++.+. .|.-.+|++. ..+++|+|+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 378999999999999999998876542 122222222 345555554 3555677765 699999999
Q ss_pred CC--CCEEEEecCCCC-c-------------------c------------hhhhccccccCCCCcceEEEEeccc
Q 016375 320 PS--VDMVINYDIPTN-S-------------------K------------DYIHRVGRTARAGRTGVAISLVNQY 360 (390)
Q Consensus 320 ~~--~~~vi~~~~~~~-~-------------------~------------~~~Q~~GR~~R~~~~~~~i~~~~~~ 360 (390)
.+ +++|+.++.|.. . . ..-|.+|||.|..++-.+|++++..
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKR 780 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhh
Confidence 77 788998888742 0 0 2369999999998888888888754
No 172
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.02 E-value=9.1e-09 Score=86.09 Aligned_cols=160 Identities=20% Similarity=0.159 Sum_probs=109.0
Q ss_pred CCchHHHhhHHhHhc----------CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHH
Q 016375 30 TPSKIQAEAIPHALE----------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~----------~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 99 (390)
.++..|.|++-...+ +..+++-..||.||-......+++.+++ ..++.+|++.+..|.....
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------Gr~r~vwvS~s~dL~~Da~ 108 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------GRKRAVWVSVSNDLKYDAE 108 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------CCCceEEEECChhhhhHHH
Confidence 479999999866543 3469999999999998877777777776 3446899999999999999
Q ss_pred HHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCcc--C--------CCc-cEEEEehhhh
Q 016375 100 EQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS--L--------GTL-KYLVLDEADR 168 (390)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~--~--------~~~-~~iIiDE~H~ 168 (390)
++++.++.. .+.+..+..-... ....-...|+++|+.+|...-....... + .++ .+||+||||.
T Consensus 109 RDl~DIG~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 109 RDLRDIGAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred HHHHHhCCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh
Confidence 999988764 3333332221111 1112245799999999877643211111 0 222 5999999997
Q ss_pred hccccc--------HHHHHHHHHhCCCCccEEEEeecCchhHH
Q 016375 169 LLNDDF--------EKSLDEILNVIPRMRQTYLFSATMTKKVK 203 (390)
Q Consensus 169 ~~~~~~--------~~~~~~~~~~~~~~~~~i~~saT~~~~~~ 203 (390)
+.+... ...+..+.+.+|+.+ ++++|||......
T Consensus 184 akn~~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep~ 225 (303)
T PF13872_consen 184 AKNLSSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEPR 225 (303)
T ss_pred cCCCCccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCCc
Confidence 766322 245556667787766 9999999766444
No 173
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.01 E-value=7.8e-09 Score=86.35 Aligned_cols=132 Identities=20% Similarity=0.215 Sum_probs=93.1
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
..|+ .|++.|.-+.-.+.. .-+....||-|||+++.+++....+ .|+.|=|++.+..|+..=++++..
T Consensus 73 ~~g~-~p~~vQll~~l~L~~--G~laEm~TGEGKTli~~l~a~~~AL---------~G~~V~vvT~NdyLA~RD~~~~~~ 140 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHK--GRLAEMKTGEGKTLIAALPAALNAL---------QGKGVHVVTSNDYLAKRDAEEMRP 140 (266)
T ss_dssp HTS-----HHHHHHHHHHHT--TSEEEESTTSHHHHHHHHHHHHHHT---------TSS-EEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhccc--ceeEEecCCCCcHHHHHHHHHHHHH---------hcCCcEEEeccHHHhhccHHHHHH
Confidence 4677 688888877766654 4499999999999987766655443 577789999999999999999988
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHH-HhhcC----CCc-cCCCccEEEEehhhhhc
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMD-HLTNT----KGF-SLGTLKYLVLDEADRLL 170 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~-~~~~~----~~~-~~~~~~~iIiDE~H~~~ 170 (390)
+...+++.+....++.....+...+ .++|+++|...|.- ++... ... ..+.+.++||||++.+.
T Consensus 141 ~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 141 FYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 8888889999988888765544433 36899999887733 33321 111 14678999999999654
No 174
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.00 E-value=7.4e-09 Score=99.99 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=88.4
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHH---------HhccCCCceEEEE
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE---------ALGSGISLRCAVL 116 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~---------~~~~~~~~~~~~~ 116 (390)
.++.+.++||+|||++++..+++...+. ...++||+||+.++.+.+...++ .......+....+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~-------~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~ 132 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY-------GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVI 132 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc-------CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEE
Confidence 3799999999999999888776665442 34569999999999888876654 1112223555555
Q ss_pred ecCC-------chHHHHHhc-------CCCCCEEEeCCchhHHHhhcCCC----------ccC----CCccEEEEehhhh
Q 016375 117 VGGV-------DMMQQTLAL-------GKRPHIVVATPGRLMDHLTNTKG----------FSL----GTLKYLVLDEADR 168 (390)
Q Consensus 117 ~~~~-------~~~~~~~~~-------~~~~~i~i~t~~~l~~~~~~~~~----------~~~----~~~~~iIiDE~H~ 168 (390)
.++. ........+ .....|+++|.+.|......... ..+ ..--+||+||.|+
T Consensus 133 ~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~ 212 (986)
T PRK15483 133 NAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHR 212 (986)
T ss_pred ecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCC
Confidence 5543 111111111 11478999999988553211000 011 1124899999998
Q ss_pred hcccccHHHHHHHHHhCCCCccEEEEeecCch
Q 016375 169 LLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (390)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~ 200 (390)
+... ...+.++ ..+++.. ++..|||.+.
T Consensus 213 ~~~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 213 FPRD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred CCcc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 7552 2244555 4444444 6779999865
No 175
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.93 E-value=1.4e-08 Score=94.83 Aligned_cols=319 Identities=18% Similarity=0.236 Sum_probs=179.6
Q ss_pred HHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHH
Q 016375 22 ACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (390)
Q Consensus 22 ~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 101 (390)
.+...+-...-.+-.+++..+..++.++|.+.||+|||..+...+++.+.++... ...-+.+.-|++..+..++++
T Consensus 370 ~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g----~~~na~v~qprrisaisiaer 445 (1282)
T KOG0921|consen 370 ITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG----ASFNAVVSQPRRISAISLAER 445 (1282)
T ss_pred hhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc----ccccceeccccccchHHHHHH
Confidence 3333333334455566777777888999999999999999888888888765432 223366777887777777766
Q ss_pred HHH-----hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcc-cccH
Q 016375 102 FEA-----LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFE 175 (390)
Q Consensus 102 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~-~~~~ 175 (390)
+.+ .+...+..+. +.+.... ...-|..+|.+-+++.+.+. +....++|+||.|+... ..|.
T Consensus 446 va~er~e~~g~tvgy~vR-f~Sa~pr--------pyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv~~dfl 512 (1282)
T KOG0921|consen 446 VANERGEEVGETCGYNVR-FDSATPR--------PYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDVDTDFV 512 (1282)
T ss_pred HHHhhHHhhccccccccc-ccccccc--------cccceeeeccchhhhhhhhc----ccccccccchhhhhhccchHHH
Confidence 543 2221111111 1111111 13458899999998887763 45578999999995433 2222
Q ss_pred HHHH-HHHHhCCCCccEEEEeecCchhH--------------------HHHHHHhcCCCeEEecCCcc---------ccc
Q 016375 176 KSLD-EILNVIPRMRQTYLFSATMTKKV--------------------KKLQRACLKNPVKIEAASKY---------STV 225 (390)
Q Consensus 176 ~~~~-~~~~~~~~~~~~i~~saT~~~~~--------------------~~~~~~~~~~~~~~~~~~~~---------~~~ 225 (390)
..+. .+... ....+.++||||...++ ..+....+..+......... ...
T Consensus 513 l~~lr~m~~t-y~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~ 591 (1282)
T KOG0921|consen 513 LIVLREMIST-YRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEED 591 (1282)
T ss_pred HHHHHhhhcc-chhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccC
Confidence 1111 11111 12223555566543321 11111111111000000000 000
Q ss_pred cccce---eEEe-c---------------CC-CcchhHHHHHHH----hhCCCceEEEecchhHHHHHHHHHHhc-----
Q 016375 226 DTLKQ---QYRF-V---------------PA-KYKDCYLVYILT----EVSASSTMVFTRTCDATRLLALMLRNL----- 276 (390)
Q Consensus 226 ~~~~~---~~~~-~---------------~~-~~~~~~~~~~~~----~~~~~~~lvf~~~~~~~~~l~~~l~~~----- 276 (390)
....+ .+.. . .. ...-.....++. +.-.+-+++|.+-....-.+...|...
T Consensus 592 ~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~ 671 (1282)
T KOG0921|consen 592 EEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQ 671 (1282)
T ss_pred chhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhcc
Confidence 00000 0000 0 00 000011112222 223567899999999998888887654
Q ss_pred --CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCC------------------CCcch
Q 016375 277 --GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP------------------TNSKD 336 (390)
Q Consensus 277 --~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~------------------~~~~~ 336 (390)
-.++...|+.....+..++.+....|..++++.|.+....+.+.++..|+..+.. .+..+
T Consensus 672 ~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn 751 (1282)
T KOG0921|consen 672 ANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTN 751 (1282)
T ss_pred chhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccc
Confidence 2356777887777777888888888999999999988888777665555543321 24556
Q ss_pred hhhccccccCCCCcceEEEEecc
Q 016375 337 YIHRVGRTARAGRTGVAISLVNQ 359 (390)
Q Consensus 337 ~~Q~~GR~~R~~~~~~~i~~~~~ 359 (390)
..|+.||++|. .+|.|..+...
T Consensus 752 ~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 752 LEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred hHhhcccCcee-cccccccccHH
Confidence 79999999997 46777777654
No 176
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.85 E-value=2.7e-08 Score=90.23 Aligned_cols=76 Identities=20% Similarity=0.135 Sum_probs=65.5
Q ss_pred HHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHH
Q 016375 23 CENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (390)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 102 (390)
+-..++..|..-|..|+.+++++.-.+|.+|+|+|||.+....+++.+.+ .+.++|+++|++.-++|+++.+
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--------cCCceEEEcccchhHHHHHHHH
Confidence 34468888999999999999999999999999999999887766666555 5677999999999999999998
Q ss_pred HHhc
Q 016375 103 EALG 106 (390)
Q Consensus 103 ~~~~ 106 (390)
.+.+
T Consensus 475 h~tg 478 (935)
T KOG1802|consen 475 HKTG 478 (935)
T ss_pred HhcC
Confidence 7654
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.85 E-value=1.2e-08 Score=86.06 Aligned_cols=73 Identities=26% Similarity=0.281 Sum_probs=50.9
Q ss_pred CchHHHhhHHhHhcCCC-EEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 31 PSKIQAEAIPHALEGKD-LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 31 ~~~~Q~~~~~~i~~~~~-~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
|.+.|.+++..++.... ++|.||+|+|||.+... ++..+.+.........+.++|+++|++.-+++..+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999999998887 99999999999966443 444442110001122677899999999999999988877
No 178
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.84 E-value=1.1e-08 Score=96.52 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=89.9
Q ss_pred CceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCC-ccE-EEEeCCCCCCCCCCCCCEEEEecCC
Q 016375 254 SSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE-CNI-LICTDVASRGLDIPSVDMVINYDIP 331 (390)
Q Consensus 254 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~i-lv~t~~~~~G~d~~~~~~vi~~~~~ 331 (390)
.+++||++-...+..+...|...+.....+.|.+....|.+.+..|..+. ..+ +++..+.+.|+++..+.+|+..++-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 38999999999999999999988899999999999999999999998542 334 4567899999999999999999999
Q ss_pred CCcchhhhccccccCCCCcceEEE
Q 016375 332 TNSKDYIHRVGRTARAGRTGVAIS 355 (390)
Q Consensus 332 ~~~~~~~Q~~GR~~R~~~~~~~i~ 355 (390)
|++....|++-|++|.|+...+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999998766544
No 179
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.83 E-value=1.3e-06 Score=77.35 Aligned_cols=74 Identities=15% Similarity=0.002 Sum_probs=50.3
Q ss_pred cCCCCCchHHHhhHHhHh----cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHH
Q 016375 26 VGWKTPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 101 (390)
+++...+|-|.+-+..+. ++.++++.+|+|+|||.+.+-.++.......+ ...+.++.+-|..-.+....+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~-----~~~KliYCSRTvpEieK~l~E 86 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD-----EHRKLIYCSRTVPEIEKALEE 86 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc-----ccceEEEecCcchHHHHHHHH
Confidence 567778999988776655 46799999999999997755444433333221 234567777777766666666
Q ss_pred HHH
Q 016375 102 FEA 104 (390)
Q Consensus 102 ~~~ 104 (390)
++.
T Consensus 87 l~~ 89 (755)
T KOG1131|consen 87 LKR 89 (755)
T ss_pred HHH
Confidence 654
No 180
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.82 E-value=1.5e-08 Score=79.89 Aligned_cols=109 Identities=22% Similarity=0.257 Sum_probs=76.4
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCC--ceeeccCCCCHHHHHHHHHHhccCCccEEEEeC--CCCCCCCCCC--CCEE
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQ--RAIPISGHMSQSKRLGALNKFKAGECNILICTD--VASRGLDIPS--VDMV 325 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~--~~~~G~d~~~--~~~v 325 (390)
..+.++||++|.+..+.+.+.++.... ...++.. +..+....++.|.++.-.||+++. .+++|+|+++ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 458999999999999999999887542 1122222 355678899999999989999998 9999999987 7889
Q ss_pred EEecCCCCcc------------------------------hhhhccccccCCCCcceEEEEeccccH
Q 016375 326 INYDIPTNSK------------------------------DYIHRVGRTARAGRTGVAISLVNQYEL 362 (390)
Q Consensus 326 i~~~~~~~~~------------------------------~~~Q~~GR~~R~~~~~~~i~~~~~~~~ 362 (390)
|+.+.|.... ...|.+||+.|..++--+++++++.-.
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R~~ 152 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSRFL 152 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGGGG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCccc
Confidence 9999884211 238999999999877777777776443
No 181
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.64 E-value=1.9e-08 Score=95.71 Aligned_cols=258 Identities=19% Similarity=0.176 Sum_probs=149.5
Q ss_pred chHHHhhHHhHhc-CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCC
Q 016375 32 SKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS 110 (390)
Q Consensus 32 ~~~Q~~~~~~i~~-~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 110 (390)
.|.|...+..+.. ..++++-+|||+|||..+..++...+... ++.++++++|.++|......++.......+
T Consensus 929 n~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~-------p~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 929 NPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY-------PGSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred CCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC-------CCccEEEEcCCchhhcccccchhhhcccCC
Confidence 3444444433332 35788999999999999887777665543 677899999999998887777765444337
Q ss_pred ceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCc-cCCCccEEEEehhhhhcccccHHHHHHHHHhC----
Q 016375 111 LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLNDDFEKSLDEILNVI---- 185 (390)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~-~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~---- 185 (390)
+++...+|+....... -.+++++|+||++.....+++... .+.+++.+|+||.| +...+.+..+..+....
T Consensus 1002 ~k~ie~tgd~~pd~~~---v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~h-llg~~rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDVKA---VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIH-LLGEDRGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred ceeEeccCccCCChhh---eecCceEEcccccccCccccccchhhhccccceeecccc-cccCCCcceEEEEeeccccCc
Confidence 8888888887765322 235899999999998877765433 36789999999999 44444343333322222
Q ss_pred ---CCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEe------cC--CCcchhHHHHHHHhhCCC
Q 016375 186 ---PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRF------VP--AKYKDCYLVYILTEVSAS 254 (390)
Q Consensus 186 ---~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~ 254 (390)
+...+.+++|.-+.+.-+-..+...... ++.... .........+.. ++ ..........+....+..
T Consensus 1078 ~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~~s-vrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~ 1154 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFRPS-VRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIK 1154 (1230)
T ss_pred cccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCCcc-cccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCC
Confidence 2223455554333332221122222111 111110 111111111111 11 223344555566666889
Q ss_pred ceEEEecchhHHHHHHHHHHh----cCCceeeccCCCCHHHHHHHHHHhccCCcc
Q 016375 255 STMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECN 305 (390)
Q Consensus 255 ~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 305 (390)
+++||+.+.+....-+.-|-. ..-+...++ ++..+-+.++...++...+
T Consensus 1155 p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~--~de~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1155 PVLIFVSSRRQTRLTALDLIASCATEDNPKQFLN--MDELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred ceEEEeecccccccchHhHHhhccCCCCchhccC--CCHHHHHHHHHHhcccchh
Confidence 999999998876655544432 222233333 3355556666666655444
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.63 E-value=3.2e-07 Score=74.35 Aligned_cols=63 Identities=25% Similarity=0.239 Sum_probs=45.0
Q ss_pred CCchHHHhhHHhHhcCC--CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHH
Q 016375 30 TPSKIQAEAIPHALEGK--DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~--~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 101 (390)
+|.+.|.+++..+..+. -+++.+++|+|||++. ..+...+.. .+.++++++|+...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA--------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH--------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh--------CCCeEEEECCcHHHHHHHHHh
Confidence 37899999999997543 4788899999999753 334444443 467899999998887775555
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.59 E-value=6.2e-08 Score=77.65 Aligned_cols=142 Identities=19% Similarity=0.163 Sum_probs=70.6
Q ss_pred CCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccC
Q 016375 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 108 (390)
...++.|..+++++...+.+++.+|.|+|||+.++..+++.+.+. .-.+++++-|.....+ ++--+-.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-------~~~kiii~Rp~v~~~~----~lGflpG~ 71 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG-------EYDKIIITRPPVEAGE----DLGFLPGD 71 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT-------S-SEEEEEE-S--TT--------SS---
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC-------CCcEEEEEecCCCCcc----ccccCCCC
Confidence 456899999999999888999999999999999888888777652 4456788888765311 11100000
Q ss_pred CCceEEE-----------EecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHH
Q 016375 109 ISLRCAV-----------LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKS 177 (390)
Q Consensus 109 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~ 177 (390)
...+... +.+..... .......|-+.+...+.. ..+ . -.+||+|||+++. ...
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~~~~~~~----~~~~~~~Ie~~~~~~iRG-----rt~--~-~~~iIvDEaQN~t----~~~ 135 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELFGKEKLE----ELIQNGKIEIEPLAFIRG-----RTF--D-NAFIIVDEAQNLT----PEE 135 (205)
T ss_dssp ------TTTHHHHHHHTTTS-TTCHH----HHHHTTSEEEEEGGGGTT-------B----SEEEEE-SGGG------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChHhHH----HHhhcCeEEEEehhhhcC-----ccc--c-ceEEEEecccCCC----HHH
Confidence 0000000 00111111 111234455554432221 111 1 3799999999654 346
Q ss_pred HHHHHHhCCCCccEEEEeec
Q 016375 178 LDEILNVIPRMRQTYLFSAT 197 (390)
Q Consensus 178 ~~~~~~~~~~~~~~i~~saT 197 (390)
+..++.++....+++++.-.
T Consensus 136 ~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 136 LKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHTTB-TT-EEEEEE--
T ss_pred HHHHHcccCCCcEEEEecCc
Confidence 77778888887767766544
No 184
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.50 E-value=9.2e-07 Score=80.01 Aligned_cols=64 Identities=23% Similarity=0.201 Sum_probs=52.0
Q ss_pred CCchHHHhhHHhHhcC-CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHH
Q 016375 30 TPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 102 (390)
.+.+-|+.|+...... .-.++.||||+|||.+....+...+. .++++|+.+|++.-+++..+++
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk---------~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK---------QKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH---------cCCeEEEEcCchHHHHHHHHHh
Confidence 4788999999888776 56899999999999886554444443 5788999999999999988864
No 185
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.48 E-value=1.4e-06 Score=82.03 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=57.3
Q ss_pred cCCCCCchHHHhhHHhHh----cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHh----------c-------CC------
Q 016375 26 VGWKTPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAE----------N-------QR------ 78 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~----------~-------~~------ 78 (390)
++| +||+.|...+..+. .++++++..|||+|||+..+...+.+...... . +.
T Consensus 18 fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 566 68999998887765 46889999999999999887777776654321 0 00
Q ss_pred ------C----CCCceEEEEcCCHHHHHHHHHHHHHhccC
Q 016375 79 ------T----VPAFFACVLSPTRELAIQISEQFEALGSG 108 (390)
Q Consensus 79 ------~----~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 108 (390)
+ -..+++.+-+-|-+-..|..+++++.+..
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 0 01345666666666778888998876544
No 186
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.47 E-value=3.6e-06 Score=76.08 Aligned_cols=114 Identities=19% Similarity=0.121 Sum_probs=64.2
Q ss_pred EEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccC-CCceEEEEecCCch-HHHHH
Q 016375 50 GLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG-ISLRCAVLVGGVDM-MQQTL 127 (390)
Q Consensus 50 i~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~ 127 (390)
+.++||||||++.+..+++.+.++. ...|+.|....+++.....+..-.+. .=+.-....++... .....
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy--------r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY--------RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch--------hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 5789999999987776777665532 23688888888877766554221100 00000000111110 00000
Q ss_pred ---hcCCCCCEEEeCCchhHHHhhcCCC--cc---CCCcc-EEEEehhhhhcc
Q 016375 128 ---ALGKRPHIVVATPGRLMDHLTNTKG--FS---LGTLK-YLVLDEADRLLN 171 (390)
Q Consensus 128 ---~~~~~~~i~i~t~~~l~~~~~~~~~--~~---~~~~~-~iIiDE~H~~~~ 171 (390)
.......|+++|.+.|...+.+.+. .. +.+-. +.+-||+|++-.
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 1234578999999999887765442 12 22333 456799998754
No 187
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.46 E-value=1.2e-05 Score=78.17 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=57.2
Q ss_pred CCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCch
Q 016375 132 RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (390)
Q Consensus 132 ~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~ 200 (390)
...|+++|+..+.+.+..+. ++..++..|||||||++........+.+++...++.+-+.++|+.|..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~r-i~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGI-IPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCC-CCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 46899999999999888765 788999999999999998877666777777777777789999999653
No 188
>PF13245 AAA_19: Part of AAA domain
Probab=98.39 E-value=2.2e-06 Score=57.20 Aligned_cols=53 Identities=28% Similarity=0.341 Sum_probs=38.2
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 102 (390)
++-++|.+|+|+|||.+.+..+.+.+... .. .+.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~----~~-~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAAR----AD-PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHh----cC-CCCeEEEECCCHHHHHHHHHHH
Confidence 44566799999999977555444444211 11 2667999999999999988887
No 189
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.37 E-value=7.6e-06 Score=79.46 Aligned_cols=130 Identities=22% Similarity=0.193 Sum_probs=78.6
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
..++ .+.+.|++++..+..++.+++.+++|+|||.+. ..++..+.... ....+++++||-.-+..+.+..
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~------~~~~v~l~ApTg~AA~~L~e~~-- 388 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG------GLLPVGLAAPTGRAAKRLGEVT-- 388 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC------CCceEEEEeCchHHHHHHHHhc--
Confidence 3566 799999999999998889999999999999764 33444443311 1156888999977665433321
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcC----CCccCCCccEEEEehhhhhcccccHHHHHH
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT----KGFSLGTLKYLVLDEADRLLNDDFEKSLDE 180 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~----~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~ 180 (390)
+... .|..+++...... ..-.....++|||||++++ +. ..+..
T Consensus 389 -----g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMv-d~---~~~~~ 435 (720)
T TIGR01448 389 -----GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMM-DT---WLALS 435 (720)
T ss_pred -----CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccC-CH---HHHHH
Confidence 1111 1212222111000 0001234689999999944 42 24556
Q ss_pred HHHhCCCCccEEEEeec
Q 016375 181 ILNVIPRMRQTYLFSAT 197 (390)
Q Consensus 181 ~~~~~~~~~~~i~~saT 197 (390)
++..++...+++++.-+
T Consensus 436 Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 436 LLAALPDHARLLLVGDT 452 (720)
T ss_pred HHHhCCCCCEEEEECcc
Confidence 66677777777776543
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.35 E-value=6.3e-06 Score=78.76 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=53.8
Q ss_pred CCCchHHHhhHHhHhcC-CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 29 KTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
..+.+.|.+++..+... ...+|.||+|+|||.+....+.+ +.+ .+.++|+++|++.-++++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~-~~~--------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQ-LVK--------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHH-HHH--------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35799999999998876 67999999999999875543333 333 456899999999999999988876
No 191
>PRK10536 hypothetical protein; Provisional
Probab=98.35 E-value=9.8e-07 Score=72.84 Aligned_cols=61 Identities=18% Similarity=0.090 Sum_probs=45.1
Q ss_pred cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHH
Q 016375 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 93 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 93 (390)
.++......|..++..+.++..+++.+|+|+|||+.+...+++.+... .-.++++.-|...
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-------~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-------DVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-------CeeEEEEeCCCCC
Confidence 356668899999999999888899999999999998776666555331 2334556656543
No 192
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.30 E-value=3e-06 Score=75.62 Aligned_cols=109 Identities=18% Similarity=0.174 Sum_probs=65.8
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (390)
+-++|.|.+|||||+.++.. +..+.. ...+..+++++++..+.....+.+..-...
T Consensus 2 ~v~~I~G~aGTGKTvla~~l-~~~l~~------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------- 57 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNL-AKELQN------SEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------- 57 (352)
T ss_pred eEEEEEecCCcCHHHHHHHH-HHHhhc------cccCCceEEEEecchHHHHHHHHHhhhccc-----------------
Confidence 35899999999999875543 333311 115667899999999988888777653200
Q ss_pred HHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccc-------cHHHHHHHHHh
Q 016375 126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-------FEKSLDEILNV 184 (390)
Q Consensus 126 ~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-------~~~~~~~~~~~ 184 (390)
......+..+..+.+... ........+++|||||||++.... ....+..++..
T Consensus 58 -----~~~~~~~~~~~~~i~~~~-~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 -----KLKKSDFRKPTSFINNYS-ESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -----chhhhhhhhhHHHHhhcc-cccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001222333334433322 111235678999999999988721 23455555555
No 193
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.25 E-value=1.2e-05 Score=75.91 Aligned_cols=143 Identities=21% Similarity=0.236 Sum_probs=85.4
Q ss_pred chHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCc
Q 016375 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISL 111 (390)
Q Consensus 32 ~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 111 (390)
.++|+.++.....++-.+|.+++|+|||.+.. .++..+.+... ....++++.+||..-+..+.+.+.......+.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~----~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLAD----GERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcC----CCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 58999999999988899999999999997643 33333333111 12357899999988888877776553322211
Q ss_pred eEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCC-----ccCCCccEEEEehhhhhcccccHHHHHHHHHhCC
Q 016375 112 RCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-----FSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186 (390)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~-----~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~ 186 (390)
. .. ... ....-..|...++........ .+.-.++++||||+- |.+ ...+..++..++
T Consensus 229 ~-----~~-----~~~----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS-Mvd---~~lm~~ll~al~ 290 (615)
T PRK10875 229 T-----DE-----QKK----RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS-MVD---LPMMARLIDALP 290 (615)
T ss_pred c-----hh-----hhh----cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh-ccc---HHHHHHHHHhcc
Confidence 0 00 000 001112333333322111110 112346899999999 444 335666777788
Q ss_pred CCccEEEEeec
Q 016375 187 RMRQTYLFSAT 197 (390)
Q Consensus 187 ~~~~~i~~saT 197 (390)
+..++|++.-.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 88888887644
No 194
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.24 E-value=2e-05 Score=74.42 Aligned_cols=144 Identities=22% Similarity=0.264 Sum_probs=84.9
Q ss_pred chHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCc
Q 016375 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISL 111 (390)
Q Consensus 32 ~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 111 (390)
.++|+.++.....++-++|.+++|+|||++.. .++..+.+..... ...++++.+||-.-+..+.+.+......++.
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~---~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~ 222 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQ---GKLRIALAAPTGKAAARLAESLRKAVKNLAA 222 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhcccc---CCCcEEEECCcHHHHHHHHHHHHhhhccccc
Confidence 37999999999999999999999999998643 3444443322110 1246999999988777776666543322111
Q ss_pred eEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCc-----cCCCccEEEEehhhhhcccccHHHHHHHHHhCC
Q 016375 112 RCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF-----SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186 (390)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~-----~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~ 186 (390)
. . ... ....+-..|..+++........+ +...+++|||||+- |.+. ..+..+++.++
T Consensus 223 ~--------~--~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS-Mvd~---~l~~~ll~al~ 284 (586)
T TIGR01447 223 A--------E--ALI----AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS-MVDL---PLMAKLLKALP 284 (586)
T ss_pred c--------h--hhh----hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc-cCCH---HHHHHHHHhcC
Confidence 0 0 000 00112234444444332211111 12357899999999 4442 24666677778
Q ss_pred CCccEEEEeec
Q 016375 187 RMRQTYLFSAT 197 (390)
Q Consensus 187 ~~~~~i~~saT 197 (390)
...++|++.-.
T Consensus 285 ~~~rlIlvGD~ 295 (586)
T TIGR01447 285 PNTKLILLGDK 295 (586)
T ss_pred CCCEEEEECCh
Confidence 77777776543
No 195
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.24 E-value=1.1e-05 Score=61.29 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=56.1
Q ss_pred ccCCCCHHHHHHHHHHhccCC-ccEEEEeCCCCCCCCCCC--CCEEEEecCCCC-c------------------------
Q 016375 283 ISGHMSQSKRLGALNKFKAGE-CNILICTDVASRGLDIPS--VDMVINYDIPTN-S------------------------ 334 (390)
Q Consensus 283 ~~~~~~~~~~~~~~~~f~~~~-~~ilv~t~~~~~G~d~~~--~~~vi~~~~~~~-~------------------------ 334 (390)
+..+.+..+...+++.|.+.. ..||+++..+++|+|+++ ++.||+.+.|.. +
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 334445556788888888653 379999988999999987 678998887631 1
Q ss_pred ------chhhhccccccCCCCcceEEEEecc
Q 016375 335 ------KDYIHRVGRTARAGRTGVAISLVNQ 359 (390)
Q Consensus 335 ------~~~~Q~~GR~~R~~~~~~~i~~~~~ 359 (390)
....|.+||+.|..++--+++++++
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 1347889999998776656666654
No 196
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.23 E-value=7.5e-06 Score=62.21 Aligned_cols=96 Identities=18% Similarity=0.214 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCC---ceeeccCCCCHHHHHHHHHHhccCCc---cEEEEeCC--CCCCCCCCC--CCEEEEecCCCC-
Q 016375 265 ATRLLALMLRNLGQ---RAIPISGHMSQSKRLGALNKFKAGEC---NILICTDV--ASRGLDIPS--VDMVINYDIPTN- 333 (390)
Q Consensus 265 ~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~f~~~~~---~ilv~t~~--~~~G~d~~~--~~~vi~~~~~~~- 333 (390)
..+.+.+.+++.+. ...++.......+..++++.|.+..- .||+++.- +++|+|+++ ++.||+.+.|..
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 34556666665432 12222223333344678888876433 58888865 999999987 778999887732
Q ss_pred c------------------------------chhhhccccccCCCCcceEEEEeccc
Q 016375 334 S------------------------------KDYIHRVGRTARAGRTGVAISLVNQY 360 (390)
Q Consensus 334 ~------------------------------~~~~Q~~GR~~R~~~~~~~i~~~~~~ 360 (390)
+ ....|.+||+.|..++--+++++++.
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~R 139 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDKR 139 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEecc
Confidence 1 13489999999998776677776653
No 197
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.07 E-value=3.3e-05 Score=62.71 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=71.9
Q ss_pred CCCCCchHHHhhHHhHhc---CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHH
Q 016375 27 GWKTPSKIQAEAIPHALE---GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (390)
Q Consensus 27 g~~~~~~~Q~~~~~~i~~---~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 103 (390)
++ -+|+.|.++...+.+ +.+.+...-+|.|||.+. .|++..++.+ ....+-+++| .+|..|..+.+.
T Consensus 21 ~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAd-------g~~LvrviVp-k~Ll~q~~~~L~ 90 (229)
T PF12340_consen 21 NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALAD-------GSRLVRVIVP-KALLEQMRQMLR 90 (229)
T ss_pred Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcC-------CCcEEEEEcC-HHHHHHHHHHHH
Confidence 44 589999999999886 468999999999999875 5666666653 3345778888 578899888886
Q ss_pred Hh-ccCCCceEEE--EecCCchHH----H----HHhcCCCCCEEEeCCchhHHH
Q 016375 104 AL-GSGISLRCAV--LVGGVDMMQ----Q----TLALGKRPHIVVATPGRLMDH 146 (390)
Q Consensus 104 ~~-~~~~~~~~~~--~~~~~~~~~----~----~~~~~~~~~i~i~t~~~l~~~ 146 (390)
.- +.-.+-++.. +.-...... . .........|+++||+.++.+
T Consensus 91 ~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 91 SRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 53 3222222222 222222111 1 111234677999999987553
No 198
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.05 E-value=1.3e-05 Score=66.95 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=36.0
Q ss_pred ccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCch
Q 016375 153 FSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (390)
Q Consensus 153 ~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~ 200 (390)
...+.|.++|+||||.|....|. .+...++..+....+++++.-+..
T Consensus 125 ~~~~~fKiiIlDEcdsmtsdaq~-aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDAQA-ALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCCcceEEEEechhhhhHHHHH-HHHHHHhccccceEEEEEcCChhh
Confidence 45677899999999987776554 677777877777778888776544
No 199
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.99 E-value=2.4e-05 Score=76.79 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=100.3
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHH---------HHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEE
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLE---------IAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAV 115 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~---------~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 115 (390)
|..+++.-.+|.|||..-+...+...-. ..........+.+|||||. ++..||.+++....... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 3467888999999997654322222110 0011222355678999996 77799999999877654 78888
Q ss_pred EecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCC-------------cc------CCCccEEEEehhhhhcccccHH
Q 016375 116 LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-------------FS------LGTLKYLVLDEADRLLNDDFEK 176 (390)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~-------------~~------~~~~~~iIiDE~H~~~~~~~~~ 176 (390)
+.|-.+..........++|||++|++.|.+.+..... .+ .-.+-.|++||++. ... ...
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQM-ves-ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQM-VES-SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHh-hcc-hHH
Confidence 8876654333333344799999999999776643310 01 11245699999994 443 233
Q ss_pred HHHHHHHhCCCCccEEEEeecCchhHHHHHH
Q 016375 177 SLDEILNVIPRMRQTYLFSATMTKKVKKLQR 207 (390)
Q Consensus 177 ~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~ 207 (390)
...++...++... .=++|+||-..++.+..
T Consensus 530 ~~a~M~~rL~~in-~W~VTGTPiq~Iddl~~ 559 (1394)
T KOG0298|consen 530 AAAEMVRRLHAIN-RWCVTGTPIQKIDDLFP 559 (1394)
T ss_pred HHHHHHHHhhhhc-eeeecCCchhhhhhhHH
Confidence 4555556665544 67799998877655433
No 200
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.99 E-value=4.3e-07 Score=84.98 Aligned_cols=64 Identities=23% Similarity=0.392 Sum_probs=57.3
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhcc---CCccEEEEeCCCCCC
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA---GECNILICTDVASRG 316 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~---~~~~ilv~t~~~~~G 316 (390)
.++++++|....+..+.+.+++...+ ....++|......|...+..|+. .+..+|++|.+.+.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 68899999999999999999999988 88899999999999999999985 456689999987765
No 201
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.98 E-value=6e-05 Score=72.20 Aligned_cols=130 Identities=20% Similarity=0.181 Sum_probs=83.8
Q ss_pred CCCCchHHHhhHHhHhcCC-CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 28 WKTPSKIQAEAIPHALEGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 28 ~~~~~~~Q~~~~~~i~~~~-~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
+..|..-|++|+..++..+ ..+|.|=||+|||.+... ++..+.. .+++||+.+=|.+-+++..-.++.++
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~--------~gkkVLLtsyThsAVDNILiKL~~~~ 737 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA--------LGKKVLLTSYTHSAVDNILIKLKGFG 737 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH--------cCCeEEEEehhhHHHHHHHHHHhccC
Confidence 3468999999998887655 588899999999976443 3444433 68889999999888888887777654
Q ss_pred cCC---C--ceE------EEEecCC--chHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcc
Q 016375 107 SGI---S--LRC------AVLVGGV--DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN 171 (390)
Q Consensus 107 ~~~---~--~~~------~~~~~~~--~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~ 171 (390)
... + ..+ .+...+. ..........+...||.+|--.+.+.++ ..+.||++|||||-.+..
T Consensus 738 i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf-----~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 738 IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF-----VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh-----hccccCEEEEcccccccc
Confidence 220 0 000 0001111 1112222344578899888765554443 345689999999985443
No 202
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.95 E-value=7.3e-05 Score=56.44 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=23.8
Q ss_pred cEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecC
Q 016375 159 KYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (390)
Q Consensus 159 ~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 198 (390)
.+|||||+|++.. ...+..+........-.+.+++++
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEEECh
Confidence 6899999998642 445555555544544456666665
No 203
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.92 E-value=0.00026 Score=69.24 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=45.5
Q ss_pred CCchHHHhhHHhHhcC-CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHH
Q 016375 30 TPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 98 (390)
.+++.|++++..+..+ +-++|.+++|+|||.+. -.+.+.+.. .+..+++++|+-.-+..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--------~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--------AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--------CCCeEEEEeCcHHHHHHH
Confidence 6899999999999874 56899999999999763 334444433 467799999987655543
No 204
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.88 E-value=0.00023 Score=70.78 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=47.3
Q ss_pred cCCCCCchHHHhhHHhHhcCC-CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHH
Q 016375 26 VGWKTPSKIQAEAIPHALEGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~~~~-~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 98 (390)
.|+ .|++-|++++..+..++ .+++.+++|+|||++ +.++...+.. .+..++.++|+-.-+..+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEecCcHHHHHHH
Confidence 466 69999999999998754 589999999999976 3334444333 577899999987655443
No 205
>PRK06526 transposase; Provisional
Probab=97.81 E-value=0.00027 Score=59.58 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=19.2
Q ss_pred hHhcCCCEEEEcCCCCchhHHhHH
Q 016375 41 HALEGKDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 41 ~i~~~~~~li~~~tG~GKT~~~~~ 64 (390)
.+..+.++++.||+|+|||..+..
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHH
Confidence 344567999999999999987554
No 206
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.80 E-value=6e-05 Score=66.48 Aligned_cols=124 Identities=23% Similarity=0.175 Sum_probs=73.8
Q ss_pred CchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCC
Q 016375 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS 110 (390)
Q Consensus 31 ~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 110 (390)
|++-|.+++.. ..++++|.|++|||||.+.+.-+...+.... .+...+|++++|+..+.+..+.+........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~ 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQ 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccc
Confidence 46889999988 5688999999999999886555554444321 2455699999999999999988877532211
Q ss_pred ceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCcc-CCCccEEEEehhh
Q 016375 111 LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEAD 167 (390)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~-~~~~~~iIiDE~H 167 (390)
... .... ...........+.|+|.+++...+.+..... .-...+-++|+..
T Consensus 74 ~~~----~~~~--~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 QES----SDNE--RLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HCC----TT-H--HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ccc----cccc--cccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 000 0000 0011111235688999988866444321111 1123466777766
No 207
>PRK08181 transposase; Validated
Probab=97.75 E-value=0.00043 Score=58.72 Aligned_cols=118 Identities=21% Similarity=0.219 Sum_probs=62.8
Q ss_pred chHHHhhHH----hHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhcc
Q 016375 32 SKIQAEAIP----HALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (390)
Q Consensus 32 ~~~Q~~~~~----~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 107 (390)
...|..++. .+.+++++++.||+|+|||..+.. +...+.+ .+..++++. ...|..+..... .
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~--------~g~~v~f~~-~~~L~~~l~~a~----~ 154 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALIE--------NGWRVLFTR-TTDLVQKLQVAR----R 154 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHHH--------cCCceeeee-HHHHHHHHHHHH----h
Confidence 455555553 344678999999999999976543 3333333 345555543 344444332211 0
Q ss_pred CCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccccc-HHHHHHHHHhCC
Q 016375 108 GISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDF-EKSLDEILNVIP 186 (390)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~-~~~~~~~~~~~~ 186 (390)
. .+.+.+++. +...+++||||.+......+ ...+..+++..-
T Consensus 155 ~-----------------------------~~~~~~l~~--------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~ 197 (269)
T PRK08181 155 E-----------------------------LQLESAIAK--------LDKFDLLILDDLAYVTKDQAETSVLFELISARY 197 (269)
T ss_pred C-----------------------------CcHHHHHHH--------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence 0 011112221 33477999999995544332 345556665443
Q ss_pred CCccEEEEeecCch
Q 016375 187 RMRQTYLFSATMTK 200 (390)
Q Consensus 187 ~~~~~i~~saT~~~ 200 (390)
....+++.|-.++.
T Consensus 198 ~~~s~IiTSN~~~~ 211 (269)
T PRK08181 198 ERRSILITANQPFG 211 (269)
T ss_pred hCCCEEEEcCCCHH
Confidence 33445555555444
No 208
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.72 E-value=0.001 Score=66.77 Aligned_cols=63 Identities=17% Similarity=0.065 Sum_probs=46.9
Q ss_pred cCCCCCchHHHhhHHhHhc-CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHH
Q 016375 26 VGWKTPSKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~~-~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 98 (390)
.++ .|++-|.+++..+.. ++-+++.++.|+|||++. -++...+.. .+..++.++|+-.-+..+
T Consensus 378 ~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~--------~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 378 RHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA--------AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred cCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH--------cCCeEEEEcCcHHHHHHH
Confidence 344 699999999998864 456999999999999763 344444433 577899999986665544
No 209
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.70 E-value=0.00012 Score=61.50 Aligned_cols=79 Identities=19% Similarity=0.344 Sum_probs=60.5
Q ss_pred HHHHHhccCCccEEEEeCCCCCCCCCC--------CCCEEEEecCCCCcchhhhccccccCCCCc-ceEEEEecc---cc
Q 016375 294 GALNKFKAGECNILICTDVASRGLDIP--------SVDMVINYDIPTNSKDYIHRVGRTARAGRT-GVAISLVNQ---YE 361 (390)
Q Consensus 294 ~~~~~f~~~~~~ilv~t~~~~~G~d~~--------~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~-~~~i~~~~~---~~ 361 (390)
...+.|.+|+.+|+|-+.+.++|+.+. +-++.|.+.+||+....+|.+||++|.++. .+.+.++.. .+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 456789999999999999999999884 234678899999999999999999999864 555555542 34
Q ss_pred HHHHHHHHHHh
Q 016375 362 LEWYLQIEKLI 372 (390)
Q Consensus 362 ~~~~~~~~~~~ 372 (390)
......+.+.+
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 44455555443
No 210
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.68 E-value=0.0002 Score=61.48 Aligned_cols=65 Identities=22% Similarity=0.088 Sum_probs=49.4
Q ss_pred hcCCCCCchHHHhhHHhHhcCC--CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGK--DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELA 95 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~--~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 95 (390)
-.|+......|+-++..++... -+.+.+..|+|||+.++.+.++...+.. .-.++++.=|+..+-
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~------~y~KiiVtRp~vpvG 289 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK------RYRKIIVTRPTVPVG 289 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh------hhceEEEecCCcCcc
Confidence 3688888899999999988754 4778899999999998888887776543 333466666665543
No 211
>PRK04296 thymidine kinase; Provisional
Probab=97.66 E-value=0.00022 Score=57.49 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=23.6
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcC
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 90 (390)
-.++.+|+|+|||..++-. +..+.. .+.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~-~~~~~~--------~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQR-AYNYEE--------RGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHH-HHHHHH--------cCCeEEEEec
Confidence 4688999999999765433 333332 4667888866
No 212
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.0006 Score=60.91 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=63.7
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEE-EEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC-VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~l-il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (390)
..+++.+|||+|||.++...+......... .+..+. +-+.+-- ....++++.++...++++..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~-----~g~~V~lit~Dt~R--~aa~eQL~~~a~~lgvpv~~--------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDD-----KSLNIKIITIDNYR--IGAKKQIQTYGDIMGIPVKA--------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc-----CCCeEEEEeccCcc--HHHHHHHHHHhhcCCcceEe---------
Confidence 458899999999998765433222211100 233344 4444311 11222355555544454322
Q ss_pred HHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccc-cHHHHHHHHHhCC-CCccEEEEeecCchh
Q 016375 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNVIP-RMRQTYLFSATMTKK 201 (390)
Q Consensus 125 ~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~~~~~~~-~~~~~i~~saT~~~~ 201 (390)
+.+++.+...+.. ..++++|+||++.+...+. ....+..++.... ....++.+|||....
T Consensus 239 ------------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 239 ------------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred ------------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 1123333333332 3568899999999765432 1234444445443 224578889987653
No 213
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.65 E-value=2.4e-05 Score=73.10 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=102.5
Q ss_pred CCCCchHHHhhHHhHhc--------CC--CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHH
Q 016375 28 WKTPSKIQAEAIPHALE--------GK--DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 97 (390)
Q Consensus 28 ~~~~~~~Q~~~~~~i~~--------~~--~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 97 (390)
...++..|.+++-...+ |+ .++|-...|.||-.+.+-.+++..++ ..+++||+.-+..|--.
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk--------GRKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK--------GRKRALWFSVSSDLKFD 333 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc--------ccceeEEEEeccccccc
Confidence 34578999998866554 22 47888778888876655567777776 46679999999999888
Q ss_pred HHHHHHHhccCCCceEEEEecCCchHHHH--HhcCCCCCEEEeCCchhHHHhhcCCC-cc----------CCCc-cEEEE
Q 016375 98 ISEQFEALGSGISLRCAVLVGGVDMMQQT--LALGKRPHIVVATPGRLMDHLTNTKG-FS----------LGTL-KYLVL 163 (390)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~i~t~~~l~~~~~~~~~-~~----------~~~~-~~iIi 163 (390)
..+++...+. .++.+..+..-.- .+.. ..-..+..|+++|+..|......... +. -.+| ++||+
T Consensus 334 AERDL~DigA-~~I~V~alnK~KY-akIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvf 411 (1300)
T KOG1513|consen 334 AERDLRDIGA-TGIAVHALNKFKY-AKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVF 411 (1300)
T ss_pred hhhchhhcCC-CCccceehhhccc-ccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEe
Confidence 8888888754 3354443221110 0000 00011346999999877654332110 10 1223 69999
Q ss_pred ehhhhhcc---------cccHHHHHHHHHhCCCCccEEEEeecC
Q 016375 164 DEADRLLN---------DDFEKSLDEILNVIPRMRQTYLFSATM 198 (390)
Q Consensus 164 DE~H~~~~---------~~~~~~~~~~~~~~~~~~~~i~~saT~ 198 (390)
||||..-+ ...+..+..+.+.+|+.+ +++-|||-
T Consensus 412 DECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~AR-VVYASATG 454 (1300)
T KOG1513|consen 412 DECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNAR-VVYASATG 454 (1300)
T ss_pred hhhhhhcccccccCCCcCcccHhHHHHHHhCCCce-EEEeeccC
Confidence 99996543 234567778888888766 99999993
No 214
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00047 Score=61.08 Aligned_cols=130 Identities=18% Similarity=0.193 Sum_probs=64.5
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCC-ceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA-FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~-~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (390)
+..+++.+|||+|||.++...+.....+ .+ .++.++.. .....--.+.++.++...++.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~--------~G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~~-------- 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR--------FGASKVALLTT-DSYRIGGHEQLRIFGKILGVPVHA-------- 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh--------cCCCeEEEEec-ccccccHHHHHHHHHHHcCCceEe--------
Confidence 4579999999999998765433333222 22 23444432 222222234455544433343322
Q ss_pred HHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccc-cHHHHHHHHHhCCCCccEEEEeecCchhH
Q 016375 124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNVIPRMRQTYLFSATMTKKV 202 (390)
Q Consensus 124 ~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~~~~~~~~~~~~i~~saT~~~~~ 202 (390)
+.+...+...+.. +.+.++|+||.+=....+. ..+.+..+.........++.++||.....
T Consensus 200 -------------~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 200 -------------VKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred -------------cCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 2233333333332 3456899999986332222 22233333222223344788899976544
Q ss_pred -HHHHHHh
Q 016375 203 -KKLQRAC 209 (390)
Q Consensus 203 -~~~~~~~ 209 (390)
....+.+
T Consensus 262 l~evi~~f 269 (374)
T PRK14722 262 LNEVVQAY 269 (374)
T ss_pred HHHHHHHH
Confidence 3344443
No 215
>PHA02533 17 large terminase protein; Provisional
Probab=97.52 E-value=0.0013 Score=61.49 Aligned_cols=148 Identities=13% Similarity=0.035 Sum_probs=84.0
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCC
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 109 (390)
.|.|+|.+++..+..++-.++..+=..|||.+.+..++..+... ++..+++++|+..-+....+.++.+....
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-------KDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-------CCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 48999999999886666677888899999988664444333321 45689999999998888888777544322
Q ss_pred Cce-EEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCC
Q 016375 110 SLR-CAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188 (390)
Q Consensus 110 ~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~ 188 (390)
+.- ....... ......+..+..|.+.|.+ .....-.+++++++||+|.+.+ ..+.+.++...+...
T Consensus 132 P~l~~~~i~~~---~~~~I~l~NGS~I~~lss~--------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg 198 (534)
T PHA02533 132 PDFLQPGIVEW---NKGSIELENGSKIGAYASS--------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSG 198 (534)
T ss_pred HHHhhcceeec---CccEEEeCCCCEEEEEeCC--------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcC
Confidence 110 0000000 0011112334445444422 1112234577899999996543 234444444444332
Q ss_pred --ccEEEEeec
Q 016375 189 --RQTYLFSAT 197 (390)
Q Consensus 189 --~~~i~~saT 197 (390)
.++++.|.+
T Consensus 199 ~~~r~iiiSTp 209 (534)
T PHA02533 199 RSSKIIITSTP 209 (534)
T ss_pred CCceEEEEECC
Confidence 234444444
No 216
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.51 E-value=0.0015 Score=50.14 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
++.+++.||+|+|||..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999653
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.50 E-value=0.0056 Score=49.51 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=32.6
Q ss_pred CCccEEEEehhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCchhHHH
Q 016375 156 GTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKK 204 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~ 204 (390)
+++++|+||-+-+... ......+..+.....+..-.+.++||.......
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 4578999999875443 233456666666666666688889998775443
No 218
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.50 E-value=0.00068 Score=66.68 Aligned_cols=110 Identities=21% Similarity=0.182 Sum_probs=72.0
Q ss_pred CCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccC
Q 016375 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 108 (390)
..|.+-|++++.+. ..+++|.|++|||||.+...-+...+.+.. .+...+|+++.|+.-+.++.+++.++...
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~-----v~p~~IL~lTFTnkAA~em~~Rl~~~~~~ 75 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVEN-----ASPHSIMAVTFTNKAAAEMRHRIGALLGT 75 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CCHHHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 46899999999753 467999999999999886554444432211 24556999999999999999998886421
Q ss_pred CCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccC-CCccEEEEehhh
Q 016375 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSL-GTLKYLVLDEAD 167 (390)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~-~~~~~iIiDE~H 167 (390)
. ...+.|+|.++|...+.+...... -.-++-|+|+.+
T Consensus 76 ---~-------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d 113 (715)
T TIGR01075 76 ---S-------------------ARGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDD 113 (715)
T ss_pred ---c-------------------ccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHH
Confidence 0 125778998888543332111110 112345678765
No 219
>PRK14974 cell division protein FtsY; Provisional
Probab=97.45 E-value=0.0036 Score=54.91 Aligned_cols=129 Identities=18% Similarity=0.228 Sum_probs=68.6
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCC---HHHHHHHHHHHHHhccCCCceEEEEecCCchH
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT---RELAIQISEQFEALGSGISLRCAVLVGGVDMM 123 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (390)
-+++.+++|+|||.+... +...+.. .+.+++++... ..-..|+......+ ++.+.....+..
T Consensus 142 vi~~~G~~GvGKTTtiak-LA~~l~~--------~g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~d-- 206 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAK-LAYYLKK--------NGFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGAD-- 206 (336)
T ss_pred EEEEEcCCCCCHHHHHHH-HHHHHHH--------cCCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCCC--
Confidence 588999999999976543 3333333 34556665543 33344544444333 343321111111
Q ss_pred HHHHhcCCCCCEEEeCCch-hHHHhhcCCCccCCCccEEEEehhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCchh
Q 016375 124 QQTLALGKRPHIVVATPGR-LMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKK 201 (390)
Q Consensus 124 ~~~~~~~~~~~i~i~t~~~-l~~~~~~~~~~~~~~~~~iIiDE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~ 201 (390)
+.. +.+.+... ....+++|+||.+.++.. ......+..+....++...++.++||...+
T Consensus 207 ----------------p~~v~~~ai~~~---~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 207 ----------------PAAVAYDAIEHA---KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred ----------------HHHHHHHHHHHH---HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 111 11111110 123467999999997653 334455566666565666677788887765
Q ss_pred HHHHHHHh
Q 016375 202 VKKLQRAC 209 (390)
Q Consensus 202 ~~~~~~~~ 209 (390)
.......+
T Consensus 268 ~~~~a~~f 275 (336)
T PRK14974 268 AVEQAREF 275 (336)
T ss_pred HHHHHHHH
Confidence 55545443
No 220
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.45 E-value=0.00063 Score=65.71 Aligned_cols=87 Identities=20% Similarity=0.118 Sum_probs=59.0
Q ss_pred HHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHH
Q 016375 21 EACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 100 (390)
Q Consensus 21 ~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 100 (390)
+.+.+..-..|++-|++++..- ..+++|.|++|||||.+...-+...+.+.. ..+..+|+++.++..+..+.+
T Consensus 187 ~~f~~~e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-----~~~~~IL~ltft~~AA~em~e 259 (684)
T PRK11054 187 DFFSQVESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQ-----AQPEQILLLAFGRQAAEEMDE 259 (684)
T ss_pred HHHHhccCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-----CCHHHeEEEeccHHHHHHHHH
Confidence 3444444457999999998643 356899999999999875544433332211 134579999999999999999
Q ss_pred HHHHhccCCCceEE
Q 016375 101 QFEALGSGISLRCA 114 (390)
Q Consensus 101 ~~~~~~~~~~~~~~ 114 (390)
++.......++.+.
T Consensus 260 RL~~~lg~~~v~v~ 273 (684)
T PRK11054 260 RIRERLGTEDITAR 273 (684)
T ss_pred HHHHhcCCCCcEEE
Confidence 88765433334443
No 221
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.44 E-value=0.00071 Score=66.50 Aligned_cols=110 Identities=20% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccC
Q 016375 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 108 (390)
..|.+-|++++.+. ..+++|.|++|||||.+...-+...+.+.. .+...+|+++-|+.-+.++.+++.++...
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~ 80 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-----ASPYSIMAVTFTNKAAAEMRHRIEQLLGT 80 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CChhHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 35899999999753 468999999999999886544444332211 14556999999999999999998886421
Q ss_pred CCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCcc-CCCccEEEEehhh
Q 016375 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEAD 167 (390)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~-~~~~~~iIiDE~H 167 (390)
. ...+.|+|.++|...+.+..... .-.-++-|+|+.+
T Consensus 81 ---~-------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d 118 (721)
T PRK11773 81 ---S-------------------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDD 118 (721)
T ss_pred ---C-------------------CCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHH
Confidence 0 12577899888855433221110 1112345778765
No 222
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.36 E-value=0.0028 Score=55.98 Aligned_cols=131 Identities=19% Similarity=0.234 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (390)
++.+.+.||||.|||.+.+..+........ ..+..||...+--+ --.++++.++.-.++++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~------~~kVaiITtDtYRI--GA~EQLk~Ya~im~vp~~---------- 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK------KKKVAIITTDTYRI--GAVEQLKTYADIMGVPLE---------- 264 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc------CcceEEEEeccchh--hHHHHHHHHHHHhCCceE----------
Confidence 567999999999999876543333331111 33445555554333 334556666554445442
Q ss_pred HHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCch-hH
Q 016375 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTK-KV 202 (390)
Q Consensus 125 ~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~-~~ 202 (390)
++-++.-|...+.. +.++++|.||=+=+... ......+.++.+...+..-.+.+|||... ++
T Consensus 265 -----------vv~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 265 -----------VVYSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred -----------EecCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH
Confidence 33344444443332 55678999887763322 33344555666555455557778888654 34
Q ss_pred HHHHHHh
Q 016375 203 KKLQRAC 209 (390)
Q Consensus 203 ~~~~~~~ 209 (390)
.+....+
T Consensus 329 kei~~~f 335 (407)
T COG1419 329 KEIIKQF 335 (407)
T ss_pred HHHHHHh
Confidence 4444433
No 223
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.36 E-value=0.0064 Score=47.64 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=24.3
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 48 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 48 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
+++.+++|+|||..+...+ ..+.. .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~-~~~~~--------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLA-LNIAT--------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHH-HHHHh--------cCCEEEEEECCcch
Confidence 6789999999997654333 22222 35567777665444
No 224
>PRK05642 DNA replication initiation factor; Validated
Probab=97.36 E-value=0.00068 Score=56.71 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=29.2
Q ss_pred CccEEEEehhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCch
Q 016375 157 TLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (390)
Q Consensus 157 ~~~~iIiDE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~ 200 (390)
..+++|+|++|.... ..+...+..+++.+......+++|++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 357899999996644 34456677777766554446777777544
No 225
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.32 E-value=0.00071 Score=51.65 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=25.1
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
++.+++.+|+|+|||..+.. ++..+.. ....++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~--------~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGP--------PGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCC--------CCCCEEEECCEEcc
Confidence 46789999999999976432 2222211 11246777776544
No 226
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.30 E-value=0.0042 Score=50.07 Aligned_cols=49 Identities=20% Similarity=0.135 Sum_probs=33.9
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 48 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 48 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
+++.+|+|+|||..++..+...+ + .+..+++++.. .-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~--------~g~~v~~~s~e-~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A--------RGEPGLYVTLE-ESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H--------CCCcEEEEECC-CCHHHHHHHHHHcC
Confidence 68999999999987655444443 2 45668888764 44566777776654
No 227
>PRK12377 putative replication protein; Provisional
Probab=97.30 E-value=0.0029 Score=53.04 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=27.2
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 99 (390)
.++++.||+|+|||..+ .++...+.+ .+..++++ +...+..++.
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~--------~g~~v~~i-~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLA--------KGRSVIVV-TVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH--------cCCCeEEE-EHHHHHHHHH
Confidence 57999999999999764 344545543 34445444 4445555443
No 228
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.29 E-value=0.0024 Score=52.77 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=58.4
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHH
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (390)
.+++.||+|+|||-. +.++.+.+.+.. ++.+++++... .........++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~------~~~~v~y~~~~-~f~~~~~~~~~~---------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH------PGKRVVYLSAE-EFIREFADALRD---------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC------TTS-EEEEEHH-HHHHHHHHHHHT----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc------ccccceeecHH-HHHHHHHHHHHc----------------------
Confidence 489999999999974 445555554432 45556666542 333333322222
Q ss_pred HhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccc-ccHHHHHHHHHhCCC-CccEEEEeecCchh
Q 016375 127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILNVIPR-MRQTYLFSATMTKK 201 (390)
Q Consensus 127 ~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~~~~~~~~-~~~~i~~saT~~~~ 201 (390)
...+.+... +...++++||.+|.+... .+...+..+++.+.. .+++++.|..++..
T Consensus 86 -----------~~~~~~~~~--------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 86 -----------GEIEEFKDR--------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp -----------TSHHHHHHH--------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred -----------ccchhhhhh--------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 011222222 334789999999977663 345566666665533 34455555455443
No 229
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.25 E-value=0.0059 Score=55.69 Aligned_cols=130 Identities=20% Similarity=0.223 Sum_probs=63.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHH-HHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQAL-LEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~-~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (390)
+..+++.+|+|+|||.+....+.... .. .+.++.++.-.. -.....+.+..++...++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--------~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~-------- 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY--------GKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEV-------- 283 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--------CCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEc--------
Confidence 34689999999999987654333322 12 234444444321 1111123444444322333211
Q ss_pred HHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccc-ccHHHHHHHHH-hCCCCccEEEEeecCch-
Q 016375 124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILN-VIPRMRQTYLFSATMTK- 200 (390)
Q Consensus 124 ~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~~~~-~~~~~~~~i~~saT~~~- 200 (390)
..+++.+...+.. +.++++|+||.+-+.... .....+..++. ........+.++||...
T Consensus 284 -------------~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 284 -------------VYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred -------------cCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 1233334443332 235789999998643221 12234444444 22233447778998765
Q ss_pred hHHHHHHHh
Q 016375 201 KVKKLQRAC 209 (390)
Q Consensus 201 ~~~~~~~~~ 209 (390)
........+
T Consensus 346 ~l~~~~~~f 354 (424)
T PRK05703 346 DLKDIYKHF 354 (424)
T ss_pred HHHHHHHHh
Confidence 344444443
No 230
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.23 E-value=0.0011 Score=55.48 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=25.2
Q ss_pred ccEEEEehhhhhcc-cccHHHHHHHHHhCCC-CccEEEEeecCch
Q 016375 158 LKYLVLDEADRLLN-DDFEKSLDEILNVIPR-MRQTYLFSATMTK 200 (390)
Q Consensus 158 ~~~iIiDE~H~~~~-~~~~~~~~~~~~~~~~-~~~~i~~saT~~~ 200 (390)
.++++|||+|.+.. ..+...+..+++.+.. ....+++|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 46899999997654 3455556666655432 2223555555443
No 231
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.23 E-value=0.00091 Score=65.00 Aligned_cols=70 Identities=20% Similarity=0.132 Sum_probs=53.0
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
.|.+-|++++.+. ..+++|.|++|||||.+...-+...+.... .+..++|+++.|+.-+.++.+++....
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4789999998763 467889999999999886555554443211 134579999999999999999987754
No 232
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=97.21 E-value=0.0089 Score=56.26 Aligned_cols=134 Identities=20% Similarity=0.194 Sum_probs=78.2
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCC--CceEEEEecCCch
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI--SLRCAVLVGGVDM 122 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~--~~~~~~~~~~~~~ 122 (390)
.+..++..|=-.|||+... +++..+.... ++..++|++|....++...+++....... +..+....| . .
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e-~ 324 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATF------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-E-T 324 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhC------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-c-E
Confidence 4568888899999998654 4444333221 57789999999999999998887754321 111111122 1 0
Q ss_pred HHHHHhcCCC--CCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCc
Q 016375 123 MQQTLALGKR--PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (390)
Q Consensus 123 ~~~~~~~~~~--~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 199 (390)
........ ..|.+.|. .+........++++|+|||+.+....+...+ -.+.. ..+++|++|.|-.
T Consensus 325 --I~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~Ns 391 (738)
T PHA03368 325 --ISFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSSTNT 391 (738)
T ss_pred --EEEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecCCC
Confidence 00011111 24444431 2222344567999999999966555444444 32222 2567899998843
No 233
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0086 Score=53.15 Aligned_cols=128 Identities=15% Similarity=0.159 Sum_probs=64.1
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcC-CH--HHHHHHHHHHHHhccCCCceEEEEecCCch
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP-TR--ELAIQISEQFEALGSGISLRCAVLVGGVDM 122 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P-~~--~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (390)
+.+.+.+|+|+|||.++...+. .+.. .++++.++.. +. .-.+||. .+....++.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~--------~GkkVglI~aDt~RiaAvEQLk----~yae~lgipv~-------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHG--------KKKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVI-------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHH--------cCCcEEEEecCCcchHHHHHHH----HHhhhcCCcEE--------
Confidence 4578999999999977554332 2322 3444555444 22 2334444 33322223321
Q ss_pred HHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccc-ccHHHHHHHHHhCCCCccEEEEeecCch-
Q 016375 123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILNVIPRMRQTYLFSATMTK- 200 (390)
Q Consensus 123 ~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~~~~~~~~~~~~i~~saT~~~- 200 (390)
...+++.+...+.... ...++++|+||-+=+...+ ..-..+..++....+..-++.+|||...
T Consensus 301 -------------v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 301 -------------AVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred -------------ecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 1234555554443311 1124789999988654332 1222334444433333335668887554
Q ss_pred hHHHHHHHh
Q 016375 201 KVKKLQRAC 209 (390)
Q Consensus 201 ~~~~~~~~~ 209 (390)
......+.+
T Consensus 366 d~~~i~~~F 374 (436)
T PRK11889 366 DMIEIITNF 374 (436)
T ss_pred HHHHHHHHh
Confidence 445555443
No 234
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.0024 Score=55.92 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=23.2
Q ss_pred cEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCch
Q 016375 159 KYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (390)
Q Consensus 159 ~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~ 200 (390)
-++++||+|++...+ -..++..+.+. .++++.||-.+
T Consensus 106 tiLflDEIHRfnK~Q----QD~lLp~vE~G-~iilIGATTEN 142 (436)
T COG2256 106 TILFLDEIHRFNKAQ----QDALLPHVENG-TIILIGATTEN 142 (436)
T ss_pred eEEEEehhhhcChhh----hhhhhhhhcCC-eEEEEeccCCC
Confidence 479999999865533 22333444333 48888888543
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0012 Score=55.67 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=40.7
Q ss_pred cCCCCCchHHHhhHHhH-------hcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHH
Q 016375 26 VGWKTPSKIQAEAIPHA-------LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i-------~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 98 (390)
+.|......+.+++..+ .++.++++.||+|+|||..+...+.+ +.+ .+.. +++++...++.++
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~-l~~--------~g~s-v~f~~~~el~~~L 148 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNE-LLK--------AGIS-VLFITAPDLLSKL 148 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHH-HHH--------cCCe-EEEEEHHHHHHHH
Confidence 33433444555544433 25679999999999999876544443 333 3444 4455666776665
Q ss_pred HHHHH
Q 016375 99 SEQFE 103 (390)
Q Consensus 99 ~~~~~ 103 (390)
...+.
T Consensus 149 k~~~~ 153 (254)
T COG1484 149 KAAFD 153 (254)
T ss_pred HHHHh
Confidence 55543
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.17 E-value=0.0093 Score=49.91 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=26.4
Q ss_pred CCCccEEEEehhhhhcccccHH-HHHHHHHhC-CCCccEEEEeecCch
Q 016375 155 LGTLKYLVLDEADRLLNDDFEK-SLDEILNVI-PRMRQTYLFSATMTK 200 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~-~~~~~~~~~-~~~~~~i~~saT~~~ 200 (390)
+...+++||||++......|.. .+..+++.. .....+++.|--...
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~ 207 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNME 207 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHH
Confidence 3457899999999655444443 444555533 334446655544433
No 237
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.17 E-value=0.0014 Score=58.82 Aligned_cols=57 Identities=21% Similarity=0.186 Sum_probs=40.5
Q ss_pred CchHHHhhHHhH------hcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHH
Q 016375 31 PSKIQAEAIPHA------LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (390)
Q Consensus 31 ~~~~Q~~~~~~i------~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 96 (390)
|.+-|+.++..+ .++..+++.++.|+|||+.+- .+...+.. .++.+++++||-.-+.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~--------~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS--------RGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc--------ccceEEEecchHHHHH
Confidence 678899998888 567789999999999997632 23333222 4567888888755433
No 238
>PRK08116 hypothetical protein; Validated
Probab=97.16 E-value=0.0055 Score=52.33 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=18.5
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHH
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLE 72 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~ 72 (390)
.+++.|++|+|||..+. ++...+.+
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 49999999999997643 45555544
No 239
>PRK06921 hypothetical protein; Provisional
Probab=97.15 E-value=0.012 Score=50.28 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=24.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcC
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 90 (390)
+.++++.|++|+|||..+. ++...+.+. .+..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~-------~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK-------KGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh-------cCceEEEEEH
Confidence 4679999999999997643 344444431 1455666553
No 240
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.14 E-value=0.0029 Score=54.47 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=37.4
Q ss_pred hhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 37 EAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 37 ~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
+++..+..+..+++.+++|+|||..++..+...+.. .+..+++++-... ..++...+..
T Consensus 22 ~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--------~g~~vl~iS~E~~-~~~~~~r~~~ 80 (271)
T cd01122 22 KLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ--------HGVRVGTISLEEP-VVRTARRLLG 80 (271)
T ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--------cCceEEEEEcccC-HHHHHHHHHH
Confidence 444456667889999999999997655544443322 2666888876432 3445555543
No 241
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.14 E-value=0.0042 Score=51.81 Aligned_cols=42 Identities=12% Similarity=0.306 Sum_probs=24.4
Q ss_pred ccEEEEehhhhhccc-ccHHHHHHHHHhCCCCccEEEEeecCc
Q 016375 158 LKYLVLDEADRLLND-DFEKSLDEILNVIPRMRQTYLFSATMT 199 (390)
Q Consensus 158 ~~~iIiDE~H~~~~~-~~~~~~~~~~~~~~~~~~~i~~saT~~ 199 (390)
.++++|||+|.+... .+...+..+++........+++|++..
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 458999999976543 234555555554322222455666643
No 242
>PLN03025 replication factor C subunit; Provisional
Probab=97.13 E-value=0.0068 Score=53.45 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=24.4
Q ss_pred CccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 157 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 157 ~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
.+.++|+||+|.+.... ...+...++..+....+++.+
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 47899999999776543 345555566655555444433
No 243
>PRK06893 DNA replication initiation factor; Validated
Probab=97.13 E-value=0.0027 Score=52.98 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=28.1
Q ss_pred CCccEEEEehhhhhcc-cccHHHHHHHHHhCCC-CccEEEEeecCch
Q 016375 156 GTLKYLVLDEADRLLN-DDFEKSLDEILNVIPR-MRQTYLFSATMTK 200 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~-~~~~~~~~~~~~~~~~-~~~~i~~saT~~~ 200 (390)
.+.+++++||+|.... ..+...+..+++.... ..+++++|++..+
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 3467999999997653 3344455565555433 3346677777544
No 244
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.12 E-value=0.0044 Score=57.94 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=25.5
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
..+.++||||+|.+....+. .+...++..+....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~n-aLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFN-ALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHHH-HHHHHHhccCCCeEEEEEE
Confidence 45789999999977665543 4445556656665555544
No 245
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.11 E-value=0.04 Score=59.98 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=48.4
Q ss_pred CCchHHHhhHHhHhcC--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHH
Q 016375 30 TPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 101 (390)
.+.+-|++++..+... +-.+|.++.|+|||.+. ..+...+.. .+..++.++|+..-+..+.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~--------~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE--------QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHH
Confidence 5899999999998875 56999999999999753 334444333 577899999998776665554
No 246
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.10 E-value=0.00095 Score=54.07 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.++++++|+|+|||..+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 47999999999999754
No 247
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.10 E-value=0.0075 Score=52.93 Aligned_cols=43 Identities=26% Similarity=0.196 Sum_probs=27.6
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 97 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 97 (390)
+.++++.|+||+|||..+. ++...+.. .+..|+++. ...+..+
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~--------~g~~V~y~t-~~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLD--------RGKSVIYRT-ADELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHH--------CCCeEEEEE-HHHHHHH
Confidence 5789999999999998654 34444443 455565544 3444443
No 248
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.0037 Score=57.69 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=16.1
Q ss_pred CCEEEEcCCCCchhHHhHH
Q 016375 46 KDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~ 64 (390)
+.+++.||.|+|||.++.+
T Consensus 36 ha~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 36 QSILLVGASGVGKTTCARI 54 (491)
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 4699999999999987553
No 249
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.05 E-value=0.01 Score=46.42 Aligned_cols=49 Identities=24% Similarity=0.397 Sum_probs=32.3
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHH
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKL 205 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~ 205 (390)
..+.++||||+|.+.... ...+...++.-+....++++|..+..-+..+
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~~~il~TI 149 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNPSKILPTI 149 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-GGGS-HHH
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECChHHChHHH
Confidence 568899999999665543 4567777787777776666666555544433
No 250
>PRK08727 hypothetical protein; Validated
Probab=97.04 E-value=0.0035 Score=52.41 Aligned_cols=35 Identities=20% Similarity=0.083 Sum_probs=22.5
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEc
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLS 89 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 89 (390)
..+++.|++|+|||..+. ++...+.+ .+.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~--------~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQ--------AGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH--------cCCcEEEEe
Confidence 359999999999996543 33444433 344566654
No 251
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.00 E-value=0.0056 Score=56.79 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=27.1
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 99 (390)
..+++.||+|+|||..+ .++...+.+.. ++..++++.. ..+..++.
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~------~~~~v~yi~~-~~~~~~~~ 194 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKN------PNAKVVYVTS-EKFTNDFV 194 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhC------CCCeEEEEEH-HHHHHHHH
Confidence 35899999999999754 33444444321 3455666643 44444433
No 252
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0044 Score=58.51 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=25.0
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeec
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT 197 (390)
..++++||||+|++....+. .+...++.-+....+|+.|.-
T Consensus 123 gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEeCC
Confidence 45789999999977665443 333444444455545554443
No 253
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0033 Score=59.44 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=23.9
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
..+.++||||+|++....+. .+...++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A~N-ALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFN-ALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHHHH-HHHHHHhcCCCCcEEEEEE
Confidence 35789999999977654433 4445555555544444433
No 254
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.99 E-value=0.017 Score=53.08 Aligned_cols=150 Identities=11% Similarity=-0.005 Sum_probs=87.2
Q ss_pred CCCCCchHHHhhHHhHhc------C----CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHH
Q 016375 27 GWKTPSKIQAEAIPHALE------G----KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (390)
Q Consensus 27 g~~~~~~~Q~~~~~~i~~------~----~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 96 (390)
++ .+.|+|..++..+.- + ..++|..|-+-|||..+...+...++-.. ..+..+.|++|+..-+.
T Consensus 59 p~-~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~ 132 (546)
T COG4626 59 PE-SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAA 132 (546)
T ss_pred cc-ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHH
Confidence 44 589999999998872 1 35889999999999765544444433222 26777999999999988
Q ss_pred HHHHHHHHhccCCCceEEEEecCCchHHHHHhcC-CCCC--EEEeCCchhHHHhh-cCCCccCCCccEEEEehhhhhccc
Q 016375 97 QISEQFEALGSGISLRCAVLVGGVDMMQQTLALG-KRPH--IVVATPGRLMDHLT-NTKGFSLGTLKYLVLDEADRLLND 172 (390)
Q Consensus 97 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--i~i~t~~~l~~~~~-~~~~~~~~~~~~iIiDE~H~~~~~ 172 (390)
+....++......+ . ...... .... |...-.......+. ..+..+-.+....|+||.|.....
T Consensus 133 ~~F~~ar~mv~~~~----~---------l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~ 199 (546)
T COG4626 133 NSFNPARDMVKRDD----D---------LRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ 199 (546)
T ss_pred HhhHHHHHHHHhCc----c---------hhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH
Confidence 88888777543322 0 000000 0111 22221111122111 222344566889999999966654
Q ss_pred ccHHHHHHHHHhCCC--CccEEEEeec
Q 016375 173 DFEKSLDEILNVIPR--MRQTYLFSAT 197 (390)
Q Consensus 173 ~~~~~~~~~~~~~~~--~~~~i~~saT 197 (390)
. ..+..+..-+.+ .++++++|..
T Consensus 200 ~--~~~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 200 E--DMYSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred H--HHHHHHHhhhccCcCceEEEEecC
Confidence 2 445555444433 3456666653
No 255
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.98 E-value=0.0048 Score=56.40 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=14.9
Q ss_pred CEEEEcCCCCchhHHhHH
Q 016375 47 DLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~ 64 (390)
..++.||+|+|||.++..
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999977543
No 256
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.97 E-value=0.0056 Score=58.74 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=24.4
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
..++++||||+|++....+. .+..+++.-+....+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~N-ALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFN-AMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHHH-HHHHHHHhcCCCeEEEEEE
Confidence 45789999999977665444 3444555555555344433
No 257
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.027 Score=47.47 Aligned_cols=122 Identities=16% Similarity=0.106 Sum_probs=70.4
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHH
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (390)
.+++.+|+|+||++.+-..+- .+....+-+.+..|+..|.-+-.++..
T Consensus 168 giLLyGPPGTGKSYLAKAVAT-------------EAnSTFFSvSSSDLvSKWmGESEkLVk------------------- 215 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVAT-------------EANSTFFSVSSSDLVSKWMGESEKLVK------------------- 215 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHh-------------hcCCceEEeehHHHHHHHhccHHHHHH-------------------
Confidence 599999999999976432222 122467888888888877665554421
Q ss_pred HhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccc-------cHHHHHHHHHhC----CCCccEEEEe
Q 016375 127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-------FEKSLDEILNVI----PRMRQTYLFS 195 (390)
Q Consensus 127 ~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-------~~~~~~~~~~~~----~~~~~~i~~s 195 (390)
.|+...+ -...++|.|||++.+.... .++.-.+++-.+ +...-++.+.
T Consensus 216 ---------------nLFemAR------e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 216 ---------------NLFEMAR------ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred ---------------HHHHHHH------hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 1122222 2347899999999766521 112222232222 2223488889
Q ss_pred ecCchhHHH-HHHHhcCCCeEEecCCc
Q 016375 196 ATMTKKVKK-LQRACLKNPVKIEAASK 221 (390)
Q Consensus 196 aT~~~~~~~-~~~~~~~~~~~~~~~~~ 221 (390)
||-.+..-+ .++..+...+.+..+..
T Consensus 275 ATNiPw~LDsAIRRRFekRIYIPLPe~ 301 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRRRFEKRIYIPLPEA 301 (439)
T ss_pred cCCCchhHHHHHHHHhhcceeccCCcH
Confidence 998776544 44444545554544443
No 258
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.95 E-value=0.0084 Score=55.29 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=57.5
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (390)
..+++.|++|+|||... .++.+.+.+.. ++.+++++.+ ..+.......+..-.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~------~~~~v~yv~~-~~f~~~~~~~l~~~~------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF------SDLKVSYMSG-DEFARKAVDILQKTH------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC------CCCeEEEEEH-HHHHHHHHHHHHHhh-------------------
Confidence 35899999999999653 34444443321 4556766655 445454444432200
Q ss_pred HHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccc-ccHHHHHHHHHhCCCCccEEEEeecCch
Q 016375 126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILNVIPRMRQTYLFSATMTK 200 (390)
Q Consensus 126 ~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~~~~~~~~~~~~i~~saT~~~ 200 (390)
...+.+... ..+.+++|+||+|.+... .....+..+++.+......+++|+..++
T Consensus 195 ------------~~~~~~~~~--------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 195 ------------KEIEQFKNE--------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred ------------hHHHHHHHH--------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 000111111 335779999999966542 3344555555554333323455544433
No 259
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.95 E-value=0.0031 Score=50.91 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCch
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~ 200 (390)
-....+||+||++.|.+ +....+++..+...+..++.+...+...
T Consensus 111 ~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~s~K 155 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQSEK 155 (333)
T ss_pred CCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcchhh
Confidence 35578999999996655 3345666667766666655555555433
No 260
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.92 E-value=0.025 Score=53.65 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=40.5
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhcc
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 107 (390)
+.+-.++.+|=|.|||.+..+.+...+.. .+..++|.+|...-+.+..+.++....
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 45668889999999997755444433321 345799999999998888888766544
No 261
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.92 E-value=0.0029 Score=61.91 Aligned_cols=69 Identities=22% Similarity=0.126 Sum_probs=51.4
Q ss_pred CchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 31 ~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
|++-|++++.+. ..+++|.|++|||||.+...-+...+.+.+ .....+|+++.++.-+.+..+++.+..
T Consensus 2 Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-----~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCG-----YKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 688999988653 468999999999999886555544443211 134568999999999999999887654
No 262
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.011 Score=51.90 Aligned_cols=35 Identities=11% Similarity=-0.032 Sum_probs=28.5
Q ss_pred CCchHHHhhHHhHhcC----CCEEEEcCCCCchhHHhHH
Q 016375 30 TPSKIQAEAIPHALEG----KDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~----~~~li~~~tG~GKT~~~~~ 64 (390)
.++|||...+..+.+. +..++.||.|.|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 4589999999998864 3588999999999976544
No 263
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.90 E-value=0.0095 Score=49.72 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=24.3
Q ss_pred ccEEEEehhhhhcccccHHHHHHHHHhCCCCcc-EEEEeecCch
Q 016375 158 LKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQ-TYLFSATMTK 200 (390)
Q Consensus 158 ~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~-~i~~saT~~~ 200 (390)
.+++||||+|.+... ....+..+++....... +++++++..+
T Consensus 91 ~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 91 AELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred CCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 568999999976443 33445555544333333 4666666443
No 264
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.83 E-value=0.028 Score=42.17 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.8
Q ss_pred EEEEcCCCCchhHHh
Q 016375 48 LIGLAQTGSGKTGAF 62 (390)
Q Consensus 48 ~li~~~tG~GKT~~~ 62 (390)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 579999999999754
No 265
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.82 E-value=0.011 Score=55.34 Aligned_cols=136 Identities=13% Similarity=0.096 Sum_probs=76.4
Q ss_pred hHHHhhHHhHhc-----C----CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHH
Q 016375 33 KIQAEAIPHALE-----G----KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (390)
Q Consensus 33 ~~Q~~~~~~i~~-----~----~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 103 (390)
|+|+-++..+.- + +.+++.-|=|-|||......++..+.-.. ..+..+++++++..-+......+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-----~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG-----EPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC-----ccCceEEEEeCCHHHHHHHHHHHH
Confidence 678877777661 1 35888889999999765544444443211 156779999999999999998888
Q ss_pred HhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhc-CCCccCCCccEEEEehhhhhcccccHHHHHH
Q 016375 104 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTN-TKGFSLGTLKYLVLDEADRLLNDDFEKSLDE 180 (390)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~-~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~ 180 (390)
.+....+.......... .......|.....++++..+.+ ....+-.+.+++|+||+|.+.+......+..
T Consensus 76 ~~i~~~~~l~~~~~~~~-------~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~ 146 (477)
T PF03354_consen 76 KMIEASPELRKRKKPKI-------IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALES 146 (477)
T ss_pred HHHHhChhhccchhhhh-------hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHh
Confidence 77543211110000000 0001122333222233222222 2233455689999999997765433333333
No 266
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.81 E-value=0.0093 Score=54.44 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=78.2
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHH-HHHHHHHHHHHhccCCCceEEEEecCCchHHH
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE-LAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (390)
..++.++.|||||.+.+..++..+.... ++.+++++-|+.. +.......+.......++....-......
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--- 73 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--- 73 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc---
Confidence 4678999999999988777776666541 3456888888766 66667777766544433321111111100
Q ss_pred HHhcCC-CCCEEEeCC-chhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHH
Q 016375 126 TLALGK-RPHIVVATP-GRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVK 203 (390)
Q Consensus 126 ~~~~~~-~~~i~i~t~-~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~ 203 (390)
...... +..|++... +.... +. ....++.+.+||+..+....+......+.. +.....+++|.+|.....
T Consensus 74 ~i~~~~~g~~i~f~g~~d~~~~-ik-----~~~~~~~~~idEa~~~~~~~~~~l~~rlr~--~~~~~~i~~t~NP~~~~~ 145 (396)
T TIGR01547 74 EIKILNTGKKFIFKGLNDKPNK-LK-----SGAGIAIIWFEEASQLTFEDIKELIPRLRE--TGGKKFIIFSSNPESPLH 145 (396)
T ss_pred EEEecCCCeEEEeecccCChhH-hh-----CcceeeeehhhhhhhcCHHHHHHHHHHhhc--cCCccEEEEEcCcCCCcc
Confidence 001111 344555543 22211 11 123368999999997754444433333211 122224888999865333
Q ss_pred HHHHH
Q 016375 204 KLQRA 208 (390)
Q Consensus 204 ~~~~~ 208 (390)
-+.+.
T Consensus 146 w~~~~ 150 (396)
T TIGR01547 146 WVKKR 150 (396)
T ss_pred HHHHH
Confidence 33333
No 267
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.79 E-value=0.01 Score=52.38 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=26.1
Q ss_pred CccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 157 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 157 ~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
..++||+||+|.+........+..+++..+...++++.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467999999997744444556666677666666555433
No 268
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.021 Score=49.91 Aligned_cols=148 Identities=20% Similarity=0.170 Sum_probs=72.7
Q ss_pred CCCchHHHhhHHhHhc----C---CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHH
Q 016375 29 KTPSKIQAEAIPHALE----G---KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 101 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~----~---~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 101 (390)
..++|+|..++..+.+ + +..++.+|.|+||+..+...+-..+.+.. .... -|+. .+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~-----~~~~----~c~~-------c~~ 66 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGP-----DPAA----AQRT-------RQL 66 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCC-----CCCC----cchH-------HHH
Confidence 4689999999988763 2 35899999999999765543333222210 0000 1111 111
Q ss_pred HHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHH
Q 016375 102 FEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEI 181 (390)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~ 181 (390)
+ .-+.+.++.......+.... .....|.|-..-.+...+.... ......++|||++|.|.... ...+..+
T Consensus 67 ~-~~g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~p--~~g~~kV~iI~~ae~m~~~A-aNaLLKt 136 (319)
T PRK08769 67 I-AAGTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALTP--QYGIAQVVIVDPADAINRAA-CNALLKT 136 (319)
T ss_pred H-hcCCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhCc--ccCCcEEEEeccHhhhCHHH-HHHHHHH
Confidence 1 22334344433111111000 0001222222222222222211 13457899999999775544 3345556
Q ss_pred HHhCCCCccEEEEeecCchhH
Q 016375 182 LNVIPRMRQTYLFSATMTKKV 202 (390)
Q Consensus 182 ~~~~~~~~~~i~~saT~~~~~ 202 (390)
++.-+....++++|..+..-+
T Consensus 137 LEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 137 LEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred hhCCCCCCeEEEEECChhhCc
Confidence 666666665666655444433
No 269
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.025 Score=49.01 Aligned_cols=57 Identities=28% Similarity=0.359 Sum_probs=36.0
Q ss_pred cccccCCcccCC-CCHHHHHHHHh--cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHh
Q 016375 3 EEKEVKTFKELG-LRDELVEACEN--VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 3 ~~~~~~~~~~~~-~~~~~~~~l~~--~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~ 62 (390)
++++--+|.+.+ |.+++++.=+. +++.+|--++.-.+ ...+.+++.+|+|+|||+.+
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI---~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI---DPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC---CCCCceEeeCCCCCcHHHHH
Confidence 445566777885 66666654443 45544443333322 33568999999999999764
No 270
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.76 E-value=0.01 Score=54.30 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=24.1
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcC
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 90 (390)
.+++.||+|+|||..+ .++.+.+.+.. ++..++++..
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~~------~~~~v~yi~~ 174 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILENN------PNAKVVYVSS 174 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHhC------CCCcEEEEEH
Confidence 5899999999999764 34444444321 3556677643
No 271
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.75 E-value=0.014 Score=54.39 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.0
Q ss_pred CCEEEEcCCCCchhHHhHH
Q 016375 46 KDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~ 64 (390)
+.+++.||+|+|||.++..
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999987543
No 272
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.72 E-value=0.011 Score=54.32 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=23.7
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcC
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 90 (390)
..+++.||+|+|||..+ .++...+.+ .+.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~--------~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRE--------SGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHH--------cCCCEEEeeH
Confidence 45899999999999754 344444443 3455666653
No 273
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.70 E-value=0.016 Score=60.77 Aligned_cols=64 Identities=22% Similarity=0.178 Sum_probs=45.0
Q ss_pred CCchHHHhhHHhHhcC--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHH
Q 016375 30 TPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 98 (390)
.|++.|++++..++.. +-++|.+.+|+|||++.- .++..+..... ..+..++.++|+-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~e----~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFR-AVMSAVNMLPE----SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHH-HHHHHHHHHhh----ccCceEEEEechHHHHHHH
Confidence 6899999999999864 679999999999997632 23333222111 1456788899987665544
No 274
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.69 E-value=0.028 Score=53.85 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=23.5
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEE
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 194 (390)
..+.++||||+|++....+. .+...++.-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~N-ALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHHH-HHHHHHHcCCCCeEEEEe
Confidence 45789999999977665443 344455555554434443
No 275
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.017 Score=47.59 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=34.1
Q ss_pred cccccCCcccCC-CCHHHHHHHHhc--CCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHh
Q 016375 3 EEKEVKTFKELG-LRDELVEACENV--GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 3 ~~~~~~~~~~~~-~~~~~~~~l~~~--g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~ 62 (390)
++++...|++.+ +..++++..++. .+.....+-.- .+...+.++..+|+|+|||+++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~l---gi~pPKGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENL---GIRPPKGVLMYGPPGTGKTLMA 222 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhc---CCCCCCceEeeCCCCCcHHHHH
Confidence 456666777774 677777666653 22221111111 1223467999999999999864
No 276
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.68 E-value=0.03 Score=51.18 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=27.6
Q ss_pred ccEEEEehhhhhc-ccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHH
Q 016375 158 LKYLVLDEADRLL-NDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRA 208 (390)
Q Consensus 158 ~~~iIiDE~H~~~-~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~ 208 (390)
.++||||.+-+.. +...-+.+..+.....+..-++.++|+.........+.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 3789999884322 22233344455555445544666677766544444443
No 277
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.67 E-value=0.01 Score=58.61 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=25.7
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
..++++||||+|++....+ +.+..+++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGF-NALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 5678999999997765443 34555666666665455444
No 278
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.67 E-value=0.0069 Score=52.20 Aligned_cols=19 Identities=32% Similarity=0.316 Sum_probs=15.6
Q ss_pred CCEEEEcCCCCchhHHhHH
Q 016375 46 KDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~ 64 (390)
..+++.+|+|+|||.+...
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3688999999999987553
No 279
>PRK09183 transposase/IS protein; Provisional
Probab=96.66 E-value=0.016 Score=49.31 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=19.2
Q ss_pred HhcCCCEEEEcCCCCchhHHhHHH
Q 016375 42 ALEGKDLIGLAQTGSGKTGAFALP 65 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~~~~ 65 (390)
+.++.++++.||+|+|||..+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 456788999999999999765443
No 280
>PTZ00293 thymidine kinase; Provisional
Probab=96.65 E-value=0.02 Score=46.36 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=25.6
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 92 (390)
|.--++.+|+++|||.-.+. .+..... .+++++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr-~i~~y~~--------ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR-LVKRFTY--------SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHH-HHHHHHH--------cCCceEEEEecc
Confidence 34468899999999965433 2333322 466788888854
No 281
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.032 Score=44.10 Aligned_cols=105 Identities=15% Similarity=0.202 Sum_probs=58.3
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (390)
.-.++.+|++||||...+. ....+.. .+.++++..|...-.. + ......+.+..
T Consensus 5 ~l~~i~gpM~SGKT~eLl~-r~~~~~~--------~g~~v~vfkp~iD~R~---------~----~~~V~Sr~G~~---- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLR-RARRYKE--------AGMKVLVFKPAIDTRY---------G----VGKVSSRIGLS---- 58 (201)
T ss_pred EEEEEEccCcCcchHHHHH-HHHHHHH--------cCCeEEEEeccccccc---------c----cceeeeccCCc----
Confidence 3468899999999976332 2222222 5667888888533210 0 11111111111
Q ss_pred HHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhC
Q 016375 126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185 (390)
Q Consensus 126 ~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~ 185 (390)
..-++|-+...+...+..... ....+.|.|||++ +.+...-..+..+.+.+
T Consensus 59 ------~~A~~i~~~~~i~~~i~~~~~--~~~~~~v~IDEaQ-F~~~~~v~~l~~lad~l 109 (201)
T COG1435 59 ------SEAVVIPSDTDIFDEIAALHE--KPPVDCVLIDEAQ-FFDEELVYVLNELADRL 109 (201)
T ss_pred ------ccceecCChHHHHHHHHhccc--CCCcCEEEEehhH-hCCHHHHHHHHHHHhhc
Confidence 134566666777776665321 1227899999999 65555445555555543
No 282
>PRK04195 replication factor C large subunit; Provisional
Probab=96.62 E-value=0.019 Score=53.82 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999764
No 283
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.61 E-value=0.016 Score=48.64 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=37.2
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
.+..++|.+++|+|||..++..+.+.+ + .+.++++++-. .-..+..+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-~--------~ge~~lyvs~e-e~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-Q--------MGEPGIYVALE-EHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-H--------cCCcEEEEEee-CCHHHHHHHHHHhC
Confidence 456799999999999987665555544 2 45568888754 44567777776654
No 284
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.61 E-value=0.0053 Score=56.56 Aligned_cols=72 Identities=29% Similarity=0.226 Sum_probs=48.4
Q ss_pred CchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 31 ~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
..+-|-++++. -++...++.+..|||||.+++--+...++.... ...++.||++.|++.+..-...-|-+++
T Consensus 213 IQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~---~l~~k~vlvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 213 IQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRG---PLQAKPVLVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred hhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhcccc---ccccCceEEEcCcHHHHHHHHHhchhhc
Confidence 44555555543 235679999999999998876555444443322 2245569999999999877776665554
No 285
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.029 Score=53.62 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=24.4
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
...+.++||||+|.+....+ ..+...++.-+....+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~-naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAF-NALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHHH-HHHHHHHHcCCCCeEEEEEe
Confidence 35678999999997665443 34455555555554344444
No 286
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.59 E-value=0.013 Score=55.97 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=23.9
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
..++++||||+|.+....+. .+...+...+....+|+.|
T Consensus 118 gk~KVIIIDEad~Ls~~A~N-ALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFN-AMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHHHH-HHHHHHHhCCCCcEEEEEe
Confidence 45789999999966543333 3444555555555455544
No 287
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.017 Score=51.70 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=27.0
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCc
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 199 (390)
...+.++||||+|.+.... ...+...++.-+....++++|..+.
T Consensus 139 ~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred cCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCch
Confidence 3567899999999765543 3345555555555554555554443
No 288
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.016 Score=50.57 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=65.3
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 125 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (390)
+.+++++|+|+|||+.+-. +.. ....+.+=+-+..|...|.-+-
T Consensus 246 kgvLm~GPPGTGKTlLAKA-vAT------------Ec~tTFFNVSsstltSKwRGeS----------------------- 289 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKA-VAT------------ECGTTFFNVSSSTLTSKWRGES----------------------- 289 (491)
T ss_pred ceeeeeCCCCCcHHHHHHH-HHH------------hhcCeEEEechhhhhhhhccch-----------------------
Confidence 5799999999999975422 221 1223555555555555443332
Q ss_pred HHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccc--------cHHHHHHHHH-------hCCCCcc
Q 016375 126 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD--------FEKSLDEILN-------VIPRMRQ 190 (390)
Q Consensus 126 ~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~--------~~~~~~~~~~-------~~~~~~~ 190 (390)
+++.+.++.- ..+.-.+.|.|||++.+.... .++.=.+++- .+...+.
T Consensus 290 ---------------EKlvRlLFem--ARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~ 352 (491)
T KOG0738|consen 290 ---------------EKLVRLLFEM--ARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKV 352 (491)
T ss_pred ---------------HHHHHHHHHH--HHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccccccee
Confidence 3344444432 123457899999999766511 1111112222 2222233
Q ss_pred EEEEeecCch-hHHHHHHHhcCCCeEEecCCc
Q 016375 191 TYLFSATMTK-KVKKLQRACLKNPVKIEAASK 221 (390)
Q Consensus 191 ~i~~saT~~~-~~~~~~~~~~~~~~~~~~~~~ 221 (390)
+..+-||-.+ ++++.....+...+.+..+..
T Consensus 353 VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~ 384 (491)
T KOG0738|consen 353 VMVLAATNFPWDIDEALRRRLEKRIYIPLPDA 384 (491)
T ss_pred EEEEeccCCCcchHHHHHHHHhhheeeeCCCH
Confidence 6666788655 455555555555555554443
No 289
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.56 E-value=0.0071 Score=57.30 Aligned_cols=127 Identities=14% Similarity=0.117 Sum_probs=74.4
Q ss_pred CCCchHHHhhHHhHhcC--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHH-HHHHHh
Q 016375 29 KTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS-EQFEAL 105 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~-~~~~~~ 105 (390)
....|||.+.++.+... +.+.+..++-+|||.+.+..+...+.. ....+|++.|+...+..+. ..+..+
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--------~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ--------DPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe--------CCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 35789999999998875 479999999999998654433333322 2345899999999999987 445544
Q ss_pred ccCCCceEEEEec---C-CchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcc
Q 016375 106 GSGISLRCAVLVG---G-VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN 171 (390)
Q Consensus 106 ~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~ 171 (390)
....+.-...+.. . .........+. ...+.++... +...+.-...+++++||++.+..
T Consensus 87 i~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~-------S~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 87 IRASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGAN-------SPSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCC-------CCcccccCCcCEEEEechhhccc
Confidence 3332221111111 1 11111111122 2334444321 11223344578999999998753
No 290
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.037 Score=51.29 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=16.4
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q 016375 45 GKDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~ 64 (390)
++.+.+.+|+|+|||.++..
T Consensus 350 G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56788999999999977543
No 291
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.55 E-value=0.0063 Score=60.16 Aligned_cols=72 Identities=25% Similarity=0.251 Sum_probs=53.5
Q ss_pred CCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhcc
Q 016375 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 107 (390)
..|.+-|.+++.+. ..+++|.|++|||||.+...-+...+.+.. ....++|.++-|+.-+.++.+++..+..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-----i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-----VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-----CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35899999999753 467999999999999886555554443211 1345689999999999999888876643
No 292
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.058 Score=48.63 Aligned_cols=53 Identities=9% Similarity=0.124 Sum_probs=28.7
Q ss_pred CCccEEEEehhhhhcc-cccHHHHHHHHHhCC---CCccEEEEeecCch-hHHHHHHH
Q 016375 156 GTLKYLVLDEADRLLN-DDFEKSLDEILNVIP---RMRQTYLFSATMTK-KVKKLQRA 208 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~-~~~~~~~~~~~~~~~---~~~~~i~~saT~~~-~~~~~~~~ 208 (390)
..+++|+||=+-+... ......+..+..... ....++.++||... ........
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~ 355 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKA 355 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 3478999996553322 223334444444331 22347778998877 44444443
No 293
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.024 Score=54.98 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=61.5
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCC-ceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA-FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~-~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (390)
..+.+.+|+|+|||.++...+...... .+ +++.++.-... ..-..+.++.+....++.+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~--------~G~kkV~lit~Dt~-RigA~eQL~~~a~~~gvpv~---------- 246 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAR--------EGADQLALLTTDSF-RIGALEQLRIYGRILGVPVH---------- 246 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHH--------cCCCeEEEecCccc-chHHHHHHHHHHHhCCCCcc----------
Confidence 357899999999998755433222112 22 34444433211 11123344444433333321
Q ss_pred HHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccc-ccHHHHHHHHHhCCCCccEEEEeecCchh-H
Q 016375 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILNVIPRMRQTYLFSATMTKK-V 202 (390)
Q Consensus 125 ~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~~~~~~~~~~~~i~~saT~~~~-~ 202 (390)
++.+++.+...+.. +.+.++|+||=+=+...+ ...+.+..+.....+...++.++||.... +
T Consensus 247 -----------~~~~~~~l~~al~~-----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l 310 (767)
T PRK14723 247 -----------AVKDAADLRFALAA-----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTL 310 (767)
T ss_pred -----------ccCCHHHHHHHHHH-----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHH
Confidence 12244445444443 334678888876643322 12223333333333444577778876543 3
Q ss_pred HHHHHHh
Q 016375 203 KKLQRAC 209 (390)
Q Consensus 203 ~~~~~~~ 209 (390)
....+.+
T Consensus 311 ~~i~~~f 317 (767)
T PRK14723 311 NEVVHAY 317 (767)
T ss_pred HHHHHHH
Confidence 3344433
No 294
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.51 E-value=0.078 Score=52.05 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=23.8
Q ss_pred chHHHhhHHhHhc------C-CCE-EEEcCCCCchhHHhHHHHHHHHH
Q 016375 32 SKIQAEAIPHALE------G-KDL-IGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 32 ~~~Q~~~~~~i~~------~-~~~-li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
|+-|.+.+..++. + .++ +|.|+||+|||.+... ++..+.
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 5556555544332 1 234 5999999999977543 444444
No 295
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.015 Score=55.50 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=23.3
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
..++++||||+|++....+. .+...++.-+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE
Confidence 45789999999977665543 3334444444444444444
No 296
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.50 E-value=0.04 Score=49.39 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=33.0
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
+.-+++.+++|+|||...+..+. .+.. .+.+++++..... ..|+...+..++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~-~~a~--------~g~~VlYvs~EEs-~~qi~~Ra~rlg 133 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAA-RLAK--------RGGKVLYVSGEES-PEQIKLRADRLG 133 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH-HHHh--------cCCeEEEEECCcC-HHHHHHHHHHcC
Confidence 45689999999999976544333 3322 3456888876533 356665555554
No 297
>PF13173 AAA_14: AAA domain
Probab=96.48 E-value=0.041 Score=41.15 Aligned_cols=40 Identities=23% Similarity=0.413 Sum_probs=26.4
Q ss_pred CccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCch
Q 016375 157 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (390)
Q Consensus 157 ~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~ 200 (390)
...+|++||+|.+. +|...+..+....++ . .+.+|+....
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~~~-~-~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNGPN-I-KIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhccC-c-eEEEEccchH
Confidence 35689999999764 477778887775522 2 3555555444
No 298
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.48 E-value=0.026 Score=53.68 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.5
Q ss_pred CCEEEEcCCCCchhHHhHH
Q 016375 46 KDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~ 64 (390)
+..++.||.|+|||.++-.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578999999999987543
No 299
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.46 E-value=0.044 Score=45.69 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=34.5
Q ss_pred hcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 43 LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
..+..+++.+++|+|||..++..+.. ..+ ++.++++++.... ..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~--------~g~~~~yi~~e~~-~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQ--------NGYSVSYVSTQLT-TTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHh--------CCCcEEEEeCCCC-HHHHHHHHHHhC
Confidence 44677999999999999765443333 322 4556788885433 355555555544
No 300
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.023 Score=55.87 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=22.8
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEE
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 194 (390)
..+.++||||+|++....+ ..+..+++.-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eAq-NALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSF-NALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhccCCCeEEEEE
Confidence 4578999999997754433 3444455554554434443
No 301
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.028 Score=49.61 Aligned_cols=36 Identities=17% Similarity=-0.016 Sum_probs=27.8
Q ss_pred CchHHHhhHHhHhcC-----CCEEEEcCCCCchhHHhHHHH
Q 016375 31 PSKIQAEAIPHALEG-----KDLIGLAQTGSGKTGAFALPI 66 (390)
Q Consensus 31 ~~~~Q~~~~~~i~~~-----~~~li~~~tG~GKT~~~~~~~ 66 (390)
++|+|...+..+.+. +..++.||.|.||+..+...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 478899888887742 468899999999998765433
No 302
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.43 E-value=0.042 Score=50.36 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
.++++.||+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999997643
No 303
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.031 Score=50.24 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=22.1
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEE
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 194 (390)
....++||||+|.+....+. .+...+...+....+++.
T Consensus 118 ~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEE
Confidence 45789999999977654333 233344444444434443
No 304
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.42 E-value=0.023 Score=54.12 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=25.0
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
.....+|||||+|.+....+. .+...++..+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~n-aLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAFN-ALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHHH-HHHHHHHhCCCCeEEEEEe
Confidence 456789999999977654433 3444455555555455544
No 305
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.41 E-value=0.01 Score=49.98 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.2
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHH
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEI 73 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~ 73 (390)
-+++.+|||||||.+ +.+++..+.+.
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 388999999999965 56677776653
No 306
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.38 E-value=0.041 Score=46.97 Aligned_cols=54 Identities=11% Similarity=0.128 Sum_probs=32.4
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHh---cCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAE---NQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~---~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+.++.|++|-|||.. ++.+.+..- +.....-+.+++-+|...-...++..+-.
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 4799999999999974 344443221 11111235566777776666666655433
No 307
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.37 E-value=0.026 Score=53.40 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=26.6
Q ss_pred CCccEEEEehhhhhcccc-cHHHHHHHHHhCCC-CccEEEEeecCch
Q 016375 156 GTLKYLVLDEADRLLNDD-FEKSLDEILNVIPR-MRQTYLFSATMTK 200 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~-~~~~~~~~~~~~~~-~~~~i~~saT~~~ 200 (390)
.++++++|||+|.+.... +...+..+++.+.. ..++|+.|-.++.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~ 422 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPK 422 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChH
Confidence 347899999999665533 34455566655544 3455554444433
No 308
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.37 E-value=0.051 Score=50.11 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=24.5
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcC
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 90 (390)
..+++.||+|+|||..+ .++.+.+.+.. ++.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~------~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNE------PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhC------CCCeEEEEEH
Confidence 35899999999999754 33444444321 3456777654
No 309
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.36 E-value=0.015 Score=48.51 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=68.1
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCc-----eEEEEec
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISL-----RCAVLVG 118 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~-----~~~~~~~ 118 (390)
.+..+++.+++|+|||..++..+.+.+.+. +..+++++-... ..++.+.++.++-+..- .......
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--------ge~vlyvs~ee~-~~~l~~~~~s~g~d~~~~~~~g~l~~~d~ 88 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--------GEKVLYVSFEEP-PEELIENMKSFGWDLEEYEDSGKLKIIDA 88 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--------T--EEEEESSS--HHHHHHHHHTTTS-HHHHHHTTSEEEEES
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--------CCcEEEEEecCC-HHHHHHHHHHcCCcHHHHhhcCCEEEEec
Confidence 456799999999999987666565555431 445777775433 46677777665422100 0111111
Q ss_pred CCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcc----cccHHHHHHHHHhCCCCccEEEE
Q 016375 119 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN----DDFEKSLDEILNVIPRMRQTYLF 194 (390)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~----~~~~~~~~~~~~~~~~~~~~i~~ 194 (390)
....... . -...+.+...+... +.-...+.+|||-...+.. ..++..+..+...+.+...+.++
T Consensus 89 ~~~~~~~--------~--~~~~~~l~~~i~~~--i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~ll 156 (226)
T PF06745_consen 89 FPERIGW--------S--PNDLEELLSKIREA--IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLL 156 (226)
T ss_dssp SGGGST---------T--SCCHHHHHHHHHHH--HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEE
T ss_pred ccccccc--------c--ccCHHHHHHHHHHH--HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 1100000 0 11222333322221 1111247999999997722 33445566666666555556667
Q ss_pred eec
Q 016375 195 SAT 197 (390)
Q Consensus 195 saT 197 (390)
++.
T Consensus 157 t~~ 159 (226)
T PF06745_consen 157 TSE 159 (226)
T ss_dssp EEE
T ss_pred EEc
Confidence 666
No 310
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.36 E-value=0.059 Score=48.91 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=22.3
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcC
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 90 (390)
.+++.+++|+|||.++...+. .+.+ .++++++++.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~--------~G~kV~lV~~ 136 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR--------KGFKPCLVCA 136 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH--------CCCCEEEEcC
Confidence 478999999999977553332 2322 4555666654
No 311
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.043 Score=50.97 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=32.1
Q ss_pred CCCccEEEEehhhhhcc-------cccHHHHHHHHHhCC---CCccEEEEeecCchhHH
Q 016375 155 LGTLKYLVLDEADRLLN-------DDFEKSLDEILNVIP---RMRQTYLFSATMTKKVK 203 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~-------~~~~~~~~~~~~~~~---~~~~~i~~saT~~~~~~ 203 (390)
.+...+|.+||++-+.. +...+.+.+++..+. ....+..+.||-.++.-
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 45578999999996654 223355666665543 33468888999777543
No 312
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.026 Score=53.60 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=24.3
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
...+.++||||+|.+....+. .+...++..+....+|+.|
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~N-ALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGFN-ALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHHHH-HHHHHHhcCCCCeEEEEEe
Confidence 356789999999977654333 3444555555554444444
No 313
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.34 E-value=0.018 Score=49.23 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999997643
No 314
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.34 E-value=0.045 Score=58.27 Aligned_cols=64 Identities=22% Similarity=0.182 Sum_probs=45.4
Q ss_pred CCchHHHhhHHhHhcC--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHH
Q 016375 30 TPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 98 (390)
.|.+.|++++..++.+ +-++|.+.+|+|||.+. -.+...+..... ..+..++.++||-.-+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~----~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPE----SERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhc----ccCceEEEECCcHHHHHHH
Confidence 6899999999999975 46999999999999763 334443322111 1355688899987765543
No 315
>CHL00181 cbbX CbbX; Provisional
Probab=96.33 E-value=0.022 Score=49.16 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
.++++.+|||+|||..+-
T Consensus 60 ~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999998754
No 316
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.048 Score=49.46 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=61.2
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (390)
+..+.+.+|+|+|||.+....+...+.... .....++..++.-. ...+.+..++...++.+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~------~~~v~~i~~d~~ri--galEQL~~~a~ilGvp~~~--------- 253 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG------ADKVALLTTDSYRI--GGHEQLRIYGKLLGVSVRS--------- 253 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CCeEEEEecCCcch--hHHHHHHHHHHHcCCceec---------
Confidence 456899999999999875433332222210 12234555554222 2233344444333343322
Q ss_pred HHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCchh-H
Q 016375 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKK-V 202 (390)
Q Consensus 125 ~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~-~ 202 (390)
+.++..+...+. .+.+.+++++|.+=+... ....+.+..+.........++.++||.... .
T Consensus 254 ------------v~~~~dl~~al~-----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~ 316 (420)
T PRK14721 254 ------------IKDIADLQLMLH-----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL 316 (420)
T ss_pred ------------CCCHHHHHHHHH-----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH
Confidence 112222222222 245678899998631111 112223333322223334578889996554 3
Q ss_pred HHHHHH
Q 016375 203 KKLQRA 208 (390)
Q Consensus 203 ~~~~~~ 208 (390)
......
T Consensus 317 ~~~~~~ 322 (420)
T PRK14721 317 DEVISA 322 (420)
T ss_pred HHHHHH
Confidence 444433
No 317
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.29 E-value=0.014 Score=55.02 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.5
Q ss_pred CCEEEEcCCCCchhHHhHH
Q 016375 46 KDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~ 64 (390)
+..++.||.|+|||.++..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4588999999999977543
No 318
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.046 Score=50.72 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.5
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
..++.||+|+|||..+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 38 AYIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999997654
No 319
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.28 E-value=0.043 Score=50.66 Aligned_cols=52 Identities=23% Similarity=0.160 Sum_probs=34.2
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
+.-+++.+++|+|||...+..+.. +.+ .+.+++++.-... ..|+...+..++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~-~a~--------~g~~vlYvs~Ees-~~qi~~ra~rlg 131 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAAR-LAA--------AGGKVLYVSGEES-ASQIKLRAERLG 131 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH-HHh--------cCCeEEEEEcccc-HHHHHHHHHHcC
Confidence 456899999999999765443333 222 3556888886543 456666666654
No 320
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.029 Score=48.94 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=28.2
Q ss_pred CCchHHHhhHHhHhc----C---CCEEEEcCCCCchhHHhHHHH
Q 016375 30 TPSKIQAEAIPHALE----G---KDLIGLAQTGSGKTGAFALPI 66 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~----~---~~~li~~~tG~GKT~~~~~~~ 66 (390)
.++|+|.+.+..+.+ + +..++.||.|.||+..+...+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a 46 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFS 46 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH
Confidence 468899988877763 2 469999999999997654433
No 321
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.22 E-value=0.038 Score=49.28 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=24.0
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
....+||+||+|.+... ....+...+...+....+++.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999966442 3344555566555555455433
No 322
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.21 E-value=0.029 Score=50.87 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=25.1
Q ss_pred chHHHhhHHhHhcCCCEEEEcCCCCchhHHhH
Q 016375 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 32 ~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~ 63 (390)
......++..+..++++++.+|+|+|||..+.
T Consensus 181 e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 181 ETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 44455666777778999999999999997653
No 323
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.20 E-value=0.01 Score=53.99 Aligned_cols=39 Identities=28% Similarity=0.305 Sum_probs=29.4
Q ss_pred chHHHhhHHhHhcCCC--EEEEcCCCCchhHHhHHHHHHHHH
Q 016375 32 SKIQAEAIPHALEGKD--LIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 32 ~~~Q~~~~~~i~~~~~--~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
.+.|.+.+..+.+..+ +++.+|||||||.+ +..++..+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 7888888888877554 88899999999965 455555543
No 324
>PHA00729 NTP-binding motif containing protein
Probab=96.19 E-value=0.06 Score=44.18 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.8
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
++++.|++|+|||..+.
T Consensus 19 nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 79999999999997643
No 325
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.041 Score=48.19 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=26.8
Q ss_pred CchHHHhhHHhHhc----C---CCEEEEcCCCCchhHHhHHHH
Q 016375 31 PSKIQAEAIPHALE----G---KDLIGLAQTGSGKTGAFALPI 66 (390)
Q Consensus 31 ~~~~Q~~~~~~i~~----~---~~~li~~~tG~GKT~~~~~~~ 66 (390)
++|+|...+..+.+ + +..++.||.|.||+..+...+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 47888888877663 2 468899999999997755433
No 326
>PRK05973 replicative DNA helicase; Provisional
Probab=96.18 E-value=0.017 Score=48.00 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=51.3
Q ss_pred ccCCCCHHHHHHHHhcCCCC----------CchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCC
Q 016375 11 KELGLRDELVEACENVGWKT----------PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTV 80 (390)
Q Consensus 11 ~~~~~~~~~~~~l~~~g~~~----------~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~ 80 (390)
.+.++.+.+-+.=..-||.. .+| ..++...+..+.-++|.|+||+|||..++..+.+.+.
T Consensus 21 ~~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~--------- 90 (237)
T PRK05973 21 QNIPLHEALDRIAAEEGFSSWSLLAAKAAATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK--------- 90 (237)
T ss_pred cCCcHHHHHHHHHHHhccchHHHHHHhccCCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh---------
Confidence 44555555554445567743 222 1223334445677999999999999876655554432
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
.+.++++++-.-. ..|..+.+..++
T Consensus 91 ~Ge~vlyfSlEes-~~~i~~R~~s~g 115 (237)
T PRK05973 91 SGRTGVFFTLEYT-EQDVRDRLRALG 115 (237)
T ss_pred cCCeEEEEEEeCC-HHHHHHHHHHcC
Confidence 4556778765433 467777776664
No 327
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.18 E-value=0.066 Score=48.06 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=29.2
Q ss_pred CccEEEEehhhhhccc-ccHHHHHHHHHhCCCCc-cEEEEeecCchh
Q 016375 157 TLKYLVLDEADRLLND-DFEKSLDEILNVIPRMR-QTYLFSATMTKK 201 (390)
Q Consensus 157 ~~~~iIiDE~H~~~~~-~~~~~~~~~~~~~~~~~-~~i~~saT~~~~ 201 (390)
+.++++||.++.+... .+...+..+.+.+.... |+++.|..+|..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 5889999999976653 45566667777665554 455545444443
No 328
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.17 E-value=0.06 Score=44.57 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=35.4
Q ss_pred ccEEEEehhhhhcc--------cccHHHHHHHHHhC---CCCccEEEEeecCchhHH-HHHHHhcCCCeEEecCCc
Q 016375 158 LKYLVLDEADRLLN--------DDFEKSLDEILNVI---PRMRQTYLFSATMTKKVK-KLQRACLKNPVKIEAASK 221 (390)
Q Consensus 158 ~~~iIiDE~H~~~~--------~~~~~~~~~~~~~~---~~~~~~i~~saT~~~~~~-~~~~~~~~~~~~~~~~~~ 221 (390)
..++.+||.+-+.- .+....+.+++..+ +...-++.+.||-.+.+- ...+..+...+.+..+..
T Consensus 211 PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~ 286 (368)
T COG1223 211 PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPND 286 (368)
T ss_pred CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCCh
Confidence 67889999984322 22334555555444 333348888999766543 344444444444444433
No 329
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.16 E-value=0.14 Score=43.55 Aligned_cols=128 Identities=14% Similarity=0.166 Sum_probs=64.3
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcC-C--HHHHHHHHHHHHHhccCCCceEEEEecCCch
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP-T--RELAIQISEQFEALGSGISLRCAVLVGGVDM 122 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P-~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (390)
..+.+.+++|+|||..+...+ ..+.. .+..+.++.. . .....||....... ++.+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~-~~l~~--------~~~~v~~i~~D~~ri~~~~ql~~~~~~~----~~~~~~------- 135 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMA-WQFHG--------KKKTVGFITTDHSRIGTVQQLQDYVKTI----GFEVIA------- 135 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHH-HHHHH--------cCCeEEEEecCCCCHHHHHHHHHHhhhc----CceEEe-------
Confidence 578999999999997654322 22221 2334444443 2 24555555443332 233221
Q ss_pred HHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCch-
Q 016375 123 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTK- 200 (390)
Q Consensus 123 ~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~- 200 (390)
..+++.+...+.... ....+++|+||-+=+... ......+..+.....+...++.++||...
T Consensus 136 --------------~~~~~~l~~~l~~l~--~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 136 --------------VRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred --------------cCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 113333333332211 123578999999864432 22233344444444444446678888654
Q ss_pred hHHHHHHHh
Q 016375 201 KVKKLQRAC 209 (390)
Q Consensus 201 ~~~~~~~~~ 209 (390)
......+.+
T Consensus 200 d~~~~~~~f 208 (270)
T PRK06731 200 DMIEIITNF 208 (270)
T ss_pred HHHHHHHHh
Confidence 454555544
No 330
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.15 E-value=0.0089 Score=47.58 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=26.0
Q ss_pred hcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHH
Q 016375 43 LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 96 (390)
.+++++++.|++|+|||..+.. +...+.+ .+..++++. ...|..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~a-i~~~~~~--------~g~~v~f~~-~~~L~~ 88 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVA-IANEAIR--------KGYSVLFIT-ASDLLD 88 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHH-HHHHHHH--------TT--EEEEE-HHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHH-HHHHhcc--------CCcceeEee-cCceec
Confidence 3467899999999999987544 4444444 455566653 334443
No 331
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.044 Score=51.75 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=24.1
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
...+.++||||+|.+....+. .+...++..+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~n-aLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFN-AMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHHH-HHHHHHhCCCCCEEEEEEe
Confidence 345789999999977654433 3444444444444455444
No 332
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.14 E-value=0.032 Score=52.15 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=26.0
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
...+.++||||+|.+....+ ..+...+...+....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A~-NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEAF-NALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHHH-HHHHHHHhhcCCceEEEEEE
Confidence 35688999999997765433 34555555556666555554
No 333
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.12 E-value=0.0073 Score=60.24 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=75.7
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCcc-EEEEeCCCCCCCCCCCCCEEEEecC
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN-ILICTDVASRGLDIPSVDMVINYDI 330 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-ilv~t~~~~~G~d~~~~~~vi~~~~ 330 (390)
.-.++|+|+.-......+...+...++......+ .++....+..|.+ ++ .++-+...+.|+|+-++.+|+..++
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheecc
Confidence 3467899988877777777777777776554443 2334556666765 44 4566788899999999999999999
Q ss_pred CCCcchhhhccccccCCCCcceE
Q 016375 331 PTNSKDYIHRVGRTARAGRTGVA 353 (390)
Q Consensus 331 ~~~~~~~~Q~~GR~~R~~~~~~~ 353 (390)
-.++..-.|++||++|.|++.+.
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~pT 1317 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRPT 1317 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccch
Confidence 99999999999999999987654
No 334
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.086 Score=46.42 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=26.8
Q ss_pred CchHHHhhHHhHhcC-----CCEEEEcCCCCchhHHhHH
Q 016375 31 PSKIQAEAIPHALEG-----KDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 31 ~~~~Q~~~~~~i~~~-----~~~li~~~tG~GKT~~~~~ 64 (390)
++|+|...+..+... +..++.||.|.|||..+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 478888888887742 3588999999999977554
No 335
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.069 Score=50.26 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=24.8
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
....++||||+|++....+. .+...++..+....+|+.|
T Consensus 118 g~~kViIIDEa~~ls~~a~n-aLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFN-ALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHHHH-HHHHHHhcCCCCceEEEEE
Confidence 45789999999977654433 4455555555555455444
No 336
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=96.05 E-value=0.16 Score=47.58 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=73.1
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHH----HhccCCCceEEEEecCCc
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE----ALGSGISLRCAVLVGGVD 121 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~----~~~~~~~~~~~~~~~~~~ 121 (390)
+..++.-|--.|||+. +.|++..++..- .+-++.+++..+..++-+.+++. +|...... ....++.-
T Consensus 203 kaTVFLVPRRHGKTWf-~VpiIsllL~s~------~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v--i~~k~~tI 273 (668)
T PHA03372 203 KATVFLVPRRHGKTWF-IIPIISFLLKNI------IGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT--IENKDNVI 273 (668)
T ss_pred cceEEEecccCCceeh-HHHHHHHHHHhh------cCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce--eeecCcEE
Confidence 5567778999999975 456666666543 56678999999888777666654 33322111 11111110
Q ss_pred hHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCC-CCccEEEEeecC
Q 016375 122 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATM 198 (390)
Q Consensus 122 ~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~i~~saT~ 198 (390)
.... . ..+..++.++ ..+......++++++++||+| +...+ .+..++..+. +.+++|++|.|-
T Consensus 274 ~~s~--p-g~Kst~~fas-------c~n~NsiRGQ~fnll~VDEA~-FI~~~---a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 274 SIDH--R-GAKSTALFAS-------CYNTNSIRGQNFHLLLVDEAH-FIKKD---AFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred EEec--C-CCcceeeehh-------hccCccccCCCCCEEEEehhh-ccCHH---HHHHhhhhhcccCceEEEEeCCC
Confidence 0000 0 0111222222 123334567889999999999 44433 3444444433 345688888874
No 337
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.05 E-value=0.057 Score=47.06 Aligned_cols=27 Identities=30% Similarity=0.273 Sum_probs=19.5
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLE 72 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~ 72 (390)
++++++.|++|+|||..+. ++...+.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~ 182 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAK 182 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 3579999999999998654 34444443
No 338
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.048 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=16.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPI 66 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~ 66 (390)
++.+++.+|+|+|||.++...+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999997755433
No 339
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.028 Score=54.27 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.0
Q ss_pred CEEEEcCCCCchhHHhHH
Q 016375 47 DLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~ 64 (390)
..++.||.|+|||.++..
T Consensus 42 AYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 478999999999987543
No 340
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.99 E-value=0.093 Score=47.84 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=15.6
Q ss_pred CCEEEEcCCCCchhHHhHH
Q 016375 46 KDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~ 64 (390)
+..++.||+|+|||.++..
T Consensus 39 ha~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3488999999999987653
No 341
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.98 E-value=0.047 Score=53.47 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=67.4
Q ss_pred CCCceEEEecchhHHHHHHHHHHh----cCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CCCCCCCCCCCCEEE
Q 016375 252 SASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMVI 326 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~~~G~d~~~~~~vi 326 (390)
.+.++++.+|+...|.+.++.+++ .++.+..++|+++..++.+.++.+.+|+.+|+|+|+ .+...+.+.++..||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 567899999999999888877665 368899999999999999999999999999999997 455567788899888
Q ss_pred EecC
Q 016375 327 NYDI 330 (390)
Q Consensus 327 ~~~~ 330 (390)
+...
T Consensus 389 IDE~ 392 (681)
T PRK10917 389 IDEQ 392 (681)
T ss_pred Eech
Confidence 7654
No 342
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.98 E-value=0.075 Score=44.39 Aligned_cols=53 Identities=19% Similarity=0.077 Sum_probs=32.7
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
.+..+++.+++|+|||..++..+.+.+ . ++..++++... ....++.+.++.++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~--------~g~~~~~is~e-~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-R--------DGDPVIYVTTE-ESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-h--------cCCeEEEEEcc-CCHHHHHHHHHHhC
Confidence 467899999999999976554343333 2 34457777653 33355555554443
No 343
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.037 Score=52.95 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=15.7
Q ss_pred CCEEEEcCCCCchhHHhHH
Q 016375 46 KDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~ 64 (390)
+..++.||.|+|||.++..
T Consensus 39 ha~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 4588999999999987653
No 344
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.97 E-value=0.047 Score=47.44 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.6
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.+.++++|+|+|||..+
T Consensus 163 pSmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLA 179 (554)
T ss_pred CceEEecCCCCchHHHH
Confidence 47999999999999654
No 345
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.022 Score=47.66 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.5
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
.|+++.+|+|.|||..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 479999999999997654
No 346
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.06 Score=50.43 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=14.4
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
.+++.+|+|+|||.++.
T Consensus 38 a~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 38 AYLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35999999999998754
No 347
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.95 E-value=0.26 Score=45.05 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=16.4
Q ss_pred CEEEEcCCCCchhHHhHHHHH
Q 016375 47 DLIGLAQTGSGKTGAFALPIL 67 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~ 67 (390)
.+++.+++|+|||.++...+.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 488999999999987654333
No 348
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.045 Score=48.33 Aligned_cols=37 Identities=14% Similarity=0.013 Sum_probs=28.0
Q ss_pred CCchHHHhhHHhHhc----C---CCEEEEcCCCCchhHHhHHHH
Q 016375 30 TPSKIQAEAIPHALE----G---KDLIGLAQTGSGKTGAFALPI 66 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~----~---~~~li~~~tG~GKT~~~~~~~ 66 (390)
.++|||...+..+.+ + +..++.||.|.||+..+...+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A 45 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHH
Confidence 367889888887753 2 458899999999997765433
No 349
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.94 E-value=0.043 Score=59.74 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=43.9
Q ss_pred CCchHHHhhHHhHhcC--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHH
Q 016375 30 TPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 98 (390)
.+++.|++++..+..+ +-++|.++.|+|||.+.. .+...+.+.... .+..++.++|+..-+..+
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~-~~~~~i~~~~~~----~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLE-SRYKPVLQAFES----EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHH-HHHHHHHHHHHh----cCCeEEEEeChHHHHHHH
Confidence 6899999999998865 457889999999997642 122222221111 466788999986655544
No 350
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.03 Score=53.14 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCchhHHhHH
Q 016375 46 KDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~ 64 (390)
+.+++.+|.|+|||.++..
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4688999999999987653
No 351
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.1 Score=50.28 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCchhHHhHH
Q 016375 46 KDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~ 64 (390)
+..++.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 5689999999999977543
No 352
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=95.86 E-value=0.012 Score=46.55 Aligned_cols=36 Identities=14% Similarity=-0.005 Sum_probs=23.7
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCH
Q 016375 48 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (390)
Q Consensus 48 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 92 (390)
.++.+|++||||...+ -.+..+.. .+.+++++-|..
T Consensus 4 ~~i~GpM~sGKS~eLi-~~~~~~~~--------~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTELI-RRIHRYEI--------AGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHHHH-HHHHHHHH--------TT-EEEEEEEST
T ss_pred EEEECCcCChhHHHHH-HHHHHHHh--------CCCeEEEEEecc
Confidence 5788999999997633 23333322 567788888854
No 353
>PRK10867 signal recognition particle protein; Provisional
Probab=95.85 E-value=0.31 Score=44.58 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=15.7
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q 016375 47 DLIGLAQTGSGKTGAFALPI 66 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~ 66 (390)
-+++.+++|+|||.++...+
T Consensus 102 vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 37889999999998765433
No 354
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.83 E-value=0.075 Score=48.56 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.+++|.||+|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999764
No 355
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.058 Score=47.78 Aligned_cols=40 Identities=30% Similarity=0.459 Sum_probs=25.9
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEee
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSA 196 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 196 (390)
..+.+||+||++.+... -...+...+..-+....+++.+-
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 56889999999976653 34455555555555554554443
No 356
>PHA00012 I assembly protein
Probab=95.82 E-value=0.19 Score=43.36 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=30.4
Q ss_pred ccCCCccEEEEehhhhhccc-ccH----HHHHH-HHHhCCCCccEEEEeecCchhHHHHHH
Q 016375 153 FSLGTLKYLVLDEADRLLND-DFE----KSLDE-ILNVIPRMRQTYLFSATMTKKVKKLQR 207 (390)
Q Consensus 153 ~~~~~~~~iIiDE~H~~~~~-~~~----~~~~~-~~~~~~~~~~~i~~saT~~~~~~~~~~ 207 (390)
++...-+++|+||||..... .++ ..+.+ +....+...-++++|-.+. .++...+
T Consensus 77 ydep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps-~VDs~IR 136 (361)
T PHA00012 77 YDESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDIS-IMDKQAR 136 (361)
T ss_pred CCCCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHH-HHhHHHH
Confidence 44567789999999987652 122 22333 3343444445666666654 3343443
No 357
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.79 E-value=0.38 Score=38.11 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=13.9
Q ss_pred EEEEcCCCCchhHHhHH
Q 016375 48 LIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 48 ~li~~~tG~GKT~~~~~ 64 (390)
.++.+++|+|||.....
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57889999999977543
No 358
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.78 E-value=0.079 Score=51.83 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
.++++.||+|+|||..+.
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999997643
No 359
>PHA00350 putative assembly protein
Probab=95.78 E-value=0.12 Score=46.33 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=14.2
Q ss_pred EEEEcCCCCchhHHhHH
Q 016375 48 LIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 48 ~li~~~tG~GKT~~~~~ 64 (390)
.++.+.+|||||+.+..
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 57899999999987654
No 360
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.77 E-value=0.059 Score=47.97 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=27.4
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecC
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 198 (390)
...+.++||||+|.+..... ..+...++.-+....++++|..+
T Consensus 139 ~g~~rVviIDeAd~l~~~aa-naLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAA-NAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred cCCceEEEEEchhhcCHHHH-HHHHHHHhcCCCCceEEEEECCh
Confidence 34678999999997765443 34555556655555556665443
No 361
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.75 E-value=0.31 Score=40.86 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=35.8
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
.+..+++.+++|+|||..+...+...+ + .+.+++++.-.... .++.+.+..++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~-~--------~g~~~~y~~~e~~~-~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL-K--------QGKKVYVITTENTS-KSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH-h--------CCCEEEEEEcCCCH-HHHHHHHHHCC
Confidence 356799999999999977655444333 2 45667887775443 56677776654
No 362
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.018 Score=57.09 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=37.5
Q ss_pred CCcccCCCCHHHHHHHHhcCCCC-CchHHHhhHHhHhcCCCEEEEcCCCCchhHHh
Q 016375 8 KTFKELGLRDELVEACENVGWKT-PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~g~~~-~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~ 62 (390)
-+|++++..+.++..|+.+-+.. +||-+.+-+ ++..-+.+++++|+|+|||+++
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH
Confidence 46788888888888888865433 344333322 3344567999999999999874
No 363
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=95.73 E-value=0.15 Score=46.07 Aligned_cols=144 Identities=15% Similarity=0.074 Sum_probs=60.8
Q ss_pred EEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHH---HHHHHHHhccCCCceEEEE--ecCCchH
Q 016375 49 IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ---ISEQFEALGSGISLRCAVL--VGGVDMM 123 (390)
Q Consensus 49 li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q---~~~~~~~~~~~~~~~~~~~--~~~~~~~ 123 (390)
++.++.|+|||.+.+..++..+.... +...++++.....+... ....+..+... ....... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~------~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP------PGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS------S--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC------CCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE-
Confidence 47889999999887766666665431 12455555444444443 22233333332 1221111 111110
Q ss_pred HHHHhcCCCCCEEEeCCch--hHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCch-
Q 016375 124 QQTLALGKRPHIVVATPGR--LMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK- 200 (390)
Q Consensus 124 ~~~~~~~~~~~i~i~t~~~--l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~- 200 (390)
..+...|.+.+.+. -...+ .-..++.+++||+-......+...+........... .+..|.|+.+
T Consensus 73 -----~~nG~~i~~~~~~~~~~~~~~------~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~~~~ 140 (384)
T PF03237_consen 73 -----LPNGSRIQFRGADSPDSGDNI------RGFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPPNPG 140 (384)
T ss_dssp -----ETTS-EEEEES-----SHHHH------HTS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SS
T ss_pred -----ecCceEEEEeccccccccccc------cccccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCCCCC
Confidence 13344566665332 11111 124578999999886655555544444444333322 2255554433
Q ss_pred -hHHHHHHHhcCC
Q 016375 201 -KVKKLQRACLKN 212 (390)
Q Consensus 201 -~~~~~~~~~~~~ 212 (390)
............
T Consensus 141 ~~~~~~~~~~~~~ 153 (384)
T PF03237_consen 141 GWFYEIFQRNLDD 153 (384)
T ss_dssp SHHHHHHHHHHCT
T ss_pred CceeeeeehhhcC
Confidence 344444444333
No 364
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.72 E-value=0.027 Score=49.22 Aligned_cols=62 Identities=26% Similarity=0.277 Sum_probs=38.1
Q ss_pred HhcCCCCCchHHHhhHHhHh-cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 24 ENVGWKTPSKIQAEAIPHAL-EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 24 ~~~g~~~~~~~Q~~~~~~i~-~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
...|. +.+.|.+.+..+. .+.++++.++||||||.. +-+++..+.... +..+++.+=...++
T Consensus 124 v~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~------~~~rivtiEd~~El 186 (323)
T PRK13833 124 VTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA------PEDRLVILEDTAEI 186 (323)
T ss_pred HHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC------CCceEEEecCCccc
Confidence 34454 5677877776655 456899999999999965 344444432211 33456666555554
No 365
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.71 E-value=0.0034 Score=49.27 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=47.1
Q ss_pred EEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHH--HH
Q 016375 49 IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ--QT 126 (390)
Q Consensus 49 li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 126 (390)
++.|+-|-|||.+.-+++...+.. ....+++.+|+..=++...+.+..-....+++. ...... ..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~--------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~-----~~~~~~~~~~ 67 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK--------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKE-----EKKKRIGQII 67 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------------EEEE-SS--S-HHHHHCC--------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh--------cCceEEEecCCHHHHHHHHHHHHhhcccccccc-----cccccccccc
Confidence 578999999996643333222211 123699999998877776666544333322222 000000 00
Q ss_pred HhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCc
Q 016375 127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (390)
Q Consensus 127 ~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 199 (390)
........|-+..|+.+... ....+++|||||=.+ . -..+..++.. .. .+++|.|..
T Consensus 68 ~~~~~~~~i~f~~Pd~l~~~--------~~~~DlliVDEAAaI-p---~p~L~~ll~~---~~-~vv~stTi~ 124 (177)
T PF05127_consen 68 KLRFNKQRIEFVAPDELLAE--------KPQADLLIVDEAAAI-P---LPLLKQLLRR---FP-RVVFSTTIH 124 (177)
T ss_dssp -----CCC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHCC---SS-EEEEEEEBS
T ss_pred ccccccceEEEECCHHHHhC--------cCCCCEEEEechhcC-C---HHHHHHHHhh---CC-EEEEEeecc
Confidence 00111334444454433221 123589999999833 2 2234444333 23 566777754
No 366
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.68 E-value=0.059 Score=46.56 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
.++++.||+|+|||..+.
T Consensus 59 ~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 479999999999997653
No 367
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.67 E-value=0.033 Score=47.47 Aligned_cols=44 Identities=30% Similarity=0.339 Sum_probs=29.8
Q ss_pred HHhcCCCCCchHHHhhHHhHhc-C-CCEEEEcCCCCchhHHhHHHHHHHH
Q 016375 23 CENVGWKTPSKIQAEAIPHALE-G-KDLIGLAQTGSGKTGAFALPILQAL 70 (390)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~i~~-~-~~~li~~~tG~GKT~~~~~~~~~~~ 70 (390)
|.++|+ .+.|.+.+..+.. . ..+++.++||||||.+. ..++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 556665 6677777766654 2 35899999999999753 3344433
No 368
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.67 E-value=0.083 Score=49.92 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=68.6
Q ss_pred hhCCCceEEEecch----hHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CCCCCCCCCCCCE
Q 016375 250 EVSASSTMVFTRTC----DATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDM 324 (390)
Q Consensus 250 ~~~~~~~lvf~~~~----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~~~G~d~~~~~~ 324 (390)
-..+.++.+..|+. .+.+.+.+.|...|+.+.++.|.+....|.++++...+|+.+++|+|. .+...+++.++..
T Consensus 308 i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgL 387 (677)
T COG1200 308 IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGL 387 (677)
T ss_pred HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeE
Confidence 33677889999985 445556666777799999999999999999999999999999999997 6677899999999
Q ss_pred EEEecC
Q 016375 325 VINYDI 330 (390)
Q Consensus 325 vi~~~~ 330 (390)
||+...
T Consensus 388 VIiDEQ 393 (677)
T COG1200 388 VIIDEQ 393 (677)
T ss_pred EEEecc
Confidence 998664
No 369
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.61 E-value=0.067 Score=51.97 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=67.6
Q ss_pred CCCceEEEecchhHHHHHHHHHHh----cCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CCCCCCCCCCCCEEE
Q 016375 252 SASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMVI 326 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~~~G~d~~~~~~vi 326 (390)
.+.++++.+|+...+.+.++.+++ .++.+..++|+++..++...++...+|+.+|+|+|+ .+...+.+.++..||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 567899999999999888877765 368899999999999999999999999999999997 555567788888888
Q ss_pred EecCC
Q 016375 327 NYDIP 331 (390)
Q Consensus 327 ~~~~~ 331 (390)
+....
T Consensus 363 IDEaH 367 (630)
T TIGR00643 363 IDEQH 367 (630)
T ss_pred Eechh
Confidence 76653
No 370
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.59 E-value=0.049 Score=50.29 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=16.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPI 66 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~ 66 (390)
+..+.+.||+|+|||.+....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 3458899999999998765433
No 371
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=95.56 E-value=0.036 Score=44.85 Aligned_cols=18 Identities=22% Similarity=0.106 Sum_probs=12.5
Q ss_pred EEEEcCCCCchhHHhHHH
Q 016375 48 LIGLAQTGSGKTGAFALP 65 (390)
Q Consensus 48 ~li~~~tG~GKT~~~~~~ 65 (390)
.++.|.+|+|||+.+...
T Consensus 3 ~~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEEE--TTSSHHHHHHHH
T ss_pred EEEEcCCCCcHhHHHHHH
Confidence 578999999999875444
No 372
>PRK06620 hypothetical protein; Validated
Probab=95.55 E-value=0.042 Score=45.25 Aligned_cols=39 Identities=15% Similarity=0.341 Sum_probs=23.3
Q ss_pred ccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCch
Q 016375 158 LKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (390)
Q Consensus 158 ~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~ 200 (390)
.++++|||+|... ...+..+++.+......+++|++-++
T Consensus 86 ~d~lliDdi~~~~----~~~lf~l~N~~~e~g~~ilits~~~p 124 (214)
T PRK06620 86 YNAFIIEDIENWQ----EPALLHIFNIINEKQKYLLLTSSDKS 124 (214)
T ss_pred CCEEEEeccccch----HHHHHHHHHHHHhcCCEEEEEcCCCc
Confidence 4689999999442 13455565555444445666666433
No 373
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.54 E-value=0.38 Score=41.23 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=28.6
Q ss_pred CCccEEEEehhhhhcc-cccHHHHHHHHHhCC------CCccEEEEeecCchhHHHHHH
Q 016375 156 GTLKYLVLDEADRLLN-DDFEKSLDEILNVIP------RMRQTYLFSATMTKKVKKLQR 207 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~-~~~~~~~~~~~~~~~------~~~~~i~~saT~~~~~~~~~~ 207 (390)
.++++|++|=+-+... ......+..+....+ ....++.++|+..........
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~ 211 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAK 211 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHH
Confidence 4578999998875443 222334444444333 344477778886554333333
No 374
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.3 Score=43.73 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=18.8
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLE 72 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~ 72 (390)
.++++.|+||+|||.+.. .+...+.+
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHHh
Confidence 469999999999997643 34444443
No 375
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.52 E-value=0.11 Score=50.39 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=77.5
Q ss_pred eEEecCCCcchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhc-CCceeeccCCCCHHHHHHHHHHhccCCccEE
Q 016375 231 QYRFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNL-GQRAIPISGHMSQSKRLGALNKFKAGECNIL 307 (390)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~il 307 (390)
....++...+.+....++.+. .+..+||.++......++.+.++.. |.++.++|+++++.+|.+.+.+..+|+.+|+
T Consensus 221 Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVV 300 (730)
T ss_pred eEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEE
Confidence 344556677777777776654 6788999999999999988888764 7889999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCEEEEec
Q 016375 308 ICTDVASRGLDIPSVDMVINYD 329 (390)
Q Consensus 308 v~t~~~~~G~d~~~~~~vi~~~ 329 (390)
|+|..+-. .-++++..+|...
T Consensus 301 IGtRSAlF-~Pf~~LGLIIvDE 321 (730)
T COG1198 301 IGTRSALF-LPFKNLGLIIVDE 321 (730)
T ss_pred EEechhhc-CchhhccEEEEec
Confidence 99963211 2345677777654
No 376
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.52 E-value=0.05 Score=47.65 Aligned_cols=63 Identities=25% Similarity=0.283 Sum_probs=39.0
Q ss_pred HHhcCCCCCchHHHhhHHhH-hcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 23 CENVGWKTPSKIQAEAIPHA-LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~i-~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
|...|. +.+.|.+.+..+ ..+.++++.++||+|||.. +.+++..+... .+..+++.+-.+.++
T Consensus 127 l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~------~~~~rivtIEd~~El 190 (319)
T PRK13894 127 YVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc------CCCceEEEEcCCCcc
Confidence 344455 467788877654 4567899999999999954 34444433211 133456666666554
No 377
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.51 E-value=0.04 Score=57.64 Aligned_cols=123 Identities=19% Similarity=0.151 Sum_probs=74.6
Q ss_pred CchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCC
Q 016375 31 PSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS 110 (390)
Q Consensus 31 ~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 110 (390)
+++-|.+++.. .+++++|.|+.|||||.+...-++..+..+ .....+|+++=|+.-+.++.+++.+.....
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~- 72 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKA- 72 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH-
Confidence 57889999973 578999999999999988655555554432 123468999999999998888876643210
Q ss_pred ceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccC-CCccEEEEehhh
Q 016375 111 LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSL-GTLKYLVLDEAD 167 (390)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~-~~~~~iIiDE~H 167 (390)
+. ..............-...-|+|.++|...+.+...+.+ -+.++=|.||..
T Consensus 73 ~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e 125 (1232)
T TIGR02785 73 LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTE 125 (1232)
T ss_pred Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHH
Confidence 00 00011111112223346678998888655544322211 123444578776
No 378
>PRK10436 hypothetical protein; Provisional
Probab=95.51 E-value=0.031 Score=51.49 Aligned_cols=44 Identities=32% Similarity=0.379 Sum_probs=29.9
Q ss_pred HHhcCCCCCchHHHhhHHhHhc--CCCEEEEcCCCCchhHHhHHHHHHHH
Q 016375 23 CENVGWKTPSKIQAEAIPHALE--GKDLIGLAQTGSGKTGAFALPILQAL 70 (390)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~i~~--~~~~li~~~tG~GKT~~~~~~~~~~~ 70 (390)
|.++|+ .+.|.+.+..+.. +.-+++.+|||||||.+. .+++..+
T Consensus 197 L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 455565 6677777776654 345899999999999763 4445443
No 379
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.51 E-value=0.11 Score=38.06 Aligned_cols=58 Identities=22% Similarity=0.114 Sum_probs=34.2
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 48 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 48 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
..+.++||+|||+++-+.+ +.+....-...-........=.|...-+.+..++++++.
T Consensus 56 lSfHG~tGtGKn~v~~liA-~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVSRLIA-EHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWI 113 (127)
T ss_pred EEeecCCCCcHHHHHHHHH-HHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHH
Confidence 4588999999999876533 343433222211222233445566677777777777653
No 380
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.49 E-value=0.13 Score=48.31 Aligned_cols=78 Identities=22% Similarity=0.251 Sum_probs=64.5
Q ss_pred CCCceEEEecchhHHHHHHHHHHhc-CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecC
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNL-GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI 330 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~ 330 (390)
.+.++++.+|....+.++.+.|++. +..+..+|++++..+|.+.+....+|+.+|+|+|...-. ..+.+++.+|+.+.
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDEE 102 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEECC
Confidence 4678999999999999999999864 677889999999999999999999999999999963221 34567888887664
No 381
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.48 E-value=0.034 Score=53.44 Aligned_cols=39 Identities=31% Similarity=0.401 Sum_probs=26.9
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEE
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 194 (390)
+.+..++|+||+....+......+...+..+.+.+ ++++
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~r-T~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGR-TTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCC-EEEE
Confidence 45678999999998888777767776665444443 3444
No 382
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.48 E-value=0.17 Score=49.50 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=65.1
Q ss_pred CCCceEEEecchhHHHHHHHHHHh-cCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecC
Q 016375 252 SASSTMVFTRTCDATRLLALMLRN-LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI 330 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~ 330 (390)
.+.+++|.+++.+.+.++.+.|++ .+..+..+||+++..++.+.+....+|+.+|+|+|...-. ..+.++..+|+.+.
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDEe 267 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEECC
Confidence 467899999999999999999987 4778999999999999999999999999999999973221 44567888887764
No 383
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.41 E-value=0.071 Score=46.34 Aligned_cols=57 Identities=26% Similarity=0.341 Sum_probs=35.3
Q ss_pred CchHHHhhHHhHh-cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 31 PSKIQAEAIPHAL-EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 31 ~~~~Q~~~~~~i~-~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
+.+.|.+.+..+. .+.++++.++||||||... .+++..+... .+..+++.+=...++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~------~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN------DPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc------CCCceEEEECCchhh
Confidence 4555666665544 4678999999999999653 3344433221 124566776666565
No 384
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.41 E-value=0.19 Score=49.89 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
..+.++.+|+|+|||..+
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 358999999999999764
No 385
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.41 E-value=0.14 Score=47.32 Aligned_cols=52 Identities=21% Similarity=0.145 Sum_probs=33.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
+.-+++.+++|+|||...+..+.. +.. .+.+++++..... ..|+...+..++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~-~a~--------~g~kvlYvs~EEs-~~qi~~ra~rlg 145 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQ-LAK--------NQMKVLYVSGEES-LQQIKMRAIRLG 145 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH-HHh--------cCCcEEEEECcCC-HHHHHHHHHHcC
Confidence 456899999999999765543332 322 3446888887544 466666665554
No 386
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.38 E-value=0.077 Score=50.40 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=15.4
Q ss_pred CCEEEEcCCCCchhHHhHH
Q 016375 46 KDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~ 64 (390)
+..++.||.|+|||.++..
T Consensus 39 hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3489999999999977543
No 387
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.052 Score=51.55 Aligned_cols=42 Identities=33% Similarity=0.374 Sum_probs=32.6
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeec
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT 197 (390)
+++..++|+|||=...+......+++.+..+...+ .+++=|-
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~r-TVlvIAH 661 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGR-TVLVIAH 661 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCC-eEEEEeh
Confidence 57789999999999999888888888887666553 5555554
No 388
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.36 E-value=0.14 Score=46.43 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
.+.+++.||+|+|||+.+
T Consensus 179 pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999764
No 389
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.34 E-value=0.13 Score=46.39 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=18.3
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
.+++|.||+|+|||.+. ..++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57999999999999754 33444443
No 390
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.34 E-value=0.1 Score=50.16 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=14.8
Q ss_pred CEEEEcCCCCchhHHhHH
Q 016375 47 DLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~ 64 (390)
..++.||+|+|||.++..
T Consensus 40 a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI 57 (585)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 469999999999977543
No 391
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.33 E-value=0.13 Score=47.99 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
..++.||+|+|||.++.
T Consensus 40 ayLf~Gp~G~GKTtlAr 56 (486)
T PRK14953 40 AYIFAGPRGTGKTTIAR 56 (486)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36889999999997654
No 392
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.33 E-value=0.09 Score=52.16 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
.+.+++.+|+|+|||..+
T Consensus 487 ~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356899999999999764
No 393
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.32 E-value=0.19 Score=51.51 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=33.5
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCc
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 199 (390)
...-+||||++|.+.+......+..++...+...++++.|-+.+
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 34568999999977656666788888888888887877776643
No 394
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.30 E-value=0.069 Score=48.46 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
...+++.||+|+|||..+
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 357999999999999764
No 395
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.29 E-value=0.31 Score=43.05 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=23.6
Q ss_pred CccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 157 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 157 ~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
...+|++||+|.+.... ...+...++..+....+++.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 46799999999664432 334555556555555555544
No 396
>PRK06904 replicative DNA helicase; Validated
Probab=95.28 E-value=0.27 Score=45.84 Aligned_cols=124 Identities=18% Similarity=0.056 Sum_probs=63.6
Q ss_pred hhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEE
Q 016375 37 EAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 116 (390)
Q Consensus 37 ~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 116 (390)
+....+..|.-+++.|.||.|||..++-.+...+.. .+..+++++.- .-..|+..++-......+.... .
T Consensus 213 ~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~--------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i-~ 282 (472)
T PRK06904 213 KKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA--------SEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKI-R 282 (472)
T ss_pred HHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--------cCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHh-c
Confidence 334444556678999999999997654434333322 35568887765 4457777666544333222211 1
Q ss_pred ecCCchHHHHH-------hcCCCCCEEEe-----CCchhHHHhhcCCCccCCCccEEEEehhhhhcc
Q 016375 117 VGGVDMMQQTL-------ALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN 171 (390)
Q Consensus 117 ~~~~~~~~~~~-------~~~~~~~i~i~-----t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~ 171 (390)
.|..-....+. .+.....+.|- |.+.+.....+.. .....+++||||=.+.+..
T Consensus 283 ~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 283 TGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCC
Confidence 22111111111 12123446653 3334433332211 0112478999999986643
No 397
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.25 E-value=0.18 Score=44.76 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
.++++.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 479999999999997643
No 398
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.24 E-value=0.26 Score=43.19 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=26.6
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecC
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 198 (390)
.....++|||++|.|.... ...+...++.-+ ...++++|..+
T Consensus 122 ~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECCh
Confidence 3568899999999775543 334555566656 44455555443
No 399
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.24 E-value=0.19 Score=48.69 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=73.2
Q ss_pred CCcchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhc-C-CceeeccCCCCHHHHHHHHHHhccCCccEEEEeCC
Q 016375 237 AKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNL-G-QRAIPISGHMSQSKRLGALNKFKAGECNILICTDV 312 (390)
Q Consensus 237 ~~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~ 312 (390)
...+......++.+. .+..+||.++....+.++.+.|++. + ..+..+|+++++.+|.+.+....+|+.+|+|+|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 345666666666543 5778999999999999999999875 3 57899999999999999999999999999999963
Q ss_pred CCCCCCCCCCCEEEEecC
Q 016375 313 ASRGLDIPSVDMVINYDI 330 (390)
Q Consensus 313 ~~~G~d~~~~~~vi~~~~ 330 (390)
.-. .-++++..+|..+-
T Consensus 250 AvF-aP~~~LgLIIvdEE 266 (665)
T PRK14873 250 AVF-APVEDLGLVAIWDD 266 (665)
T ss_pred eEE-eccCCCCEEEEEcC
Confidence 221 34456777776654
No 400
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.23 E-value=0.15 Score=47.07 Aligned_cols=69 Identities=19% Similarity=0.023 Sum_probs=40.8
Q ss_pred CCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 27 GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 27 g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
|+..-.+.-.+++..+..|.-+++.|+||+|||..++-.+...+.+ .+..+++++.- .-..|+..++-.
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~--------~g~~v~~fSlE-m~~~~l~~Rl~~ 244 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR--------EGKPVLFFSLE-MSAEQLGERLLA 244 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEECC-CCHHHHHHHHHH
Confidence 3333333333444445556779999999999997665544444323 45668888754 334555555443
No 401
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.21 E-value=0.77 Score=37.12 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCC-------ceEEEEe
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-------LRCAVLV 117 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~-------~~~~~~~ 117 (390)
+.-+++.++.|+|||...+..++-.+ . .+.++.+++..... .....++..++.+.. +.....+
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L-~--------~g~~v~yvsTe~T~-refi~qm~sl~ydv~~~~l~G~l~~~~~~ 97 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFL-M--------NGYRVTYVSTELTV-REFIKQMESLSYDVSDFLLSGRLLFFPVN 97 (235)
T ss_pred CeEEEEECCCCccHHHHHHHHHHHHH-h--------CCceEEEEEechhH-HHHHHHHHhcCCCchHHHhcceeEEEEec
Confidence 34599999999999976544333322 2 56677887764332 333334444332210 1111110
Q ss_pred --cCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHH---HHhCCCCccEE
Q 016375 118 --GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEI---LNVIPRMRQTY 192 (390)
Q Consensus 118 --~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~---~~~~~~~~~~i 192 (390)
+-.+... +..++++.+.+.. ...+-+++|+|-...+...+-...+..+ +..+....++|
T Consensus 98 ~~~~~~~~~--------------~~~~~L~~l~~~~--k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvI 161 (235)
T COG2874 98 LEPVNWGRR--------------SARKLLDLLLEFI--KRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVI 161 (235)
T ss_pred ccccccChH--------------HHHHHHHHHHhhH--HhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEE
Confidence 0000000 1123333333322 2456789999998866654433233333 34445556799
Q ss_pred EEeecCchhHH
Q 016375 193 LFSATMTKKVK 203 (390)
Q Consensus 193 ~~saT~~~~~~ 203 (390)
++|+.|..--+
T Consensus 162 ilTvhp~~l~e 172 (235)
T COG2874 162 ILTVHPSALDE 172 (235)
T ss_pred EEEeChhhcCH
Confidence 99999765433
No 402
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.19 E-value=0.3 Score=44.26 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=25.6
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCch
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~ 200 (390)
....++||||+|.+..... ..+...++.-+... ++++++|-+.
T Consensus 116 ~~~kViiIDead~m~~~aa-naLLk~LEep~~~~-~fIL~a~~~~ 158 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAA-NALLKAVEEPPPRT-VWLLCAPSPE 158 (394)
T ss_pred CCcEEEEEechhhcCHHHH-HHHHHHhhcCCCCC-eEEEEECChH
Confidence 4578999999998765443 34444555444444 4445555433
No 403
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.16 E-value=0.16 Score=44.56 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.6
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.++++.+|+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999654
No 404
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.11 E-value=0.053 Score=52.41 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=36.1
Q ss_pred CccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCc
Q 016375 157 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (390)
Q Consensus 157 ~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 199 (390)
+.-++|+|..|.+.+......+..+++..|.+-..++.|=+.+
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3568999999999888888999999999999887777775543
No 405
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.11 E-value=0.14 Score=49.33 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=24.9
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeec
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT 197 (390)
+..+.++||||+|.+.... ...+...++..+....+| +.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifI-L~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFI-LATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEE-EEeC
Confidence 4568899999999775543 334555555555544333 4444
No 406
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.089 Score=40.21 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=17.9
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHH
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLE 72 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~ 72 (390)
.+++.+++|+|||... .-+.+.+.+
T Consensus 7 ki~ITG~PGvGKtTl~-~ki~e~L~~ 31 (179)
T COG1618 7 KIFITGRPGVGKTTLV-LKIAEKLRE 31 (179)
T ss_pred EEEEeCCCCccHHHHH-HHHHHHHHh
Confidence 5899999999999754 334444443
No 407
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.07 E-value=0.14 Score=42.00 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=26.5
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCC
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT 91 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~ 91 (390)
.++-+.+.+|+|+|||..++..+.+.. . .+..++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~-~--------~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA-R--------QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-h--------CCCeEEEEECC
Confidence 356799999999999987654443332 2 34567777775
No 408
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.02 E-value=0.14 Score=50.36 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCCchhHHhH
Q 016375 45 GKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~ 63 (390)
..+.++.+|+|+|||..+-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999997643
No 409
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.00 E-value=0.2 Score=40.39 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=23.3
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEE
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 194 (390)
.....+|||||+|.+..... ..+...++..++...++++
T Consensus 94 ~~~~kviiide~~~l~~~~~-~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAA-NALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHHHH-HHHHHHhcCCCCCeEEEEE
Confidence 35678999999997765433 3344444554444434443
No 410
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.99 E-value=0.13 Score=51.75 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=65.6
Q ss_pred hCCCceEEEecchhH----HHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CCCCCCCCCCCCEE
Q 016375 251 VSASSTMVFTRTCDA----TRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMV 325 (390)
Q Consensus 251 ~~~~~~lvf~~~~~~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~~~G~d~~~~~~v 325 (390)
..+..+.|.+|+-=. -+.+.+.++...+++..++--.+.++..++++...+|+++|+|+|. .++.++-+.++..+
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLl 720 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLL 720 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeE
Confidence 357789999998544 4555556666677888899889999999999999999999999996 88889999999999
Q ss_pred EEec
Q 016375 326 INYD 329 (390)
Q Consensus 326 i~~~ 329 (390)
|+..
T Consensus 721 IIDE 724 (1139)
T COG1197 721 IIDE 724 (1139)
T ss_pred EEec
Confidence 8753
No 411
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.98 E-value=0.71 Score=39.58 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=21.9
Q ss_pred CchHHHhhHHhHh----cCC-CEEEEcCCCCchhHHh
Q 016375 31 PSKIQAEAIPHAL----EGK-DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 31 ~~~~Q~~~~~~i~----~~~-~~li~~~tG~GKT~~~ 62 (390)
+.+.+..++..+. .+. .+++.||+|+|||...
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 4555566665543 233 5889999999999753
No 412
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.18 Score=47.42 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=74.1
Q ss_pred CCcccCCCCHHHHHHHHh---cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCce
Q 016375 8 KTFKELGLRDELVEACEN---VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~---~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (390)
-+|++.+=-+++.+.|++ .+.+.+..+.+-.+ ...+.+++.+|+|+|||+.+-. +... ...
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lAka-lAne------------~~~ 494 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLAKA-LANE------------AGM 494 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHHHH-Hhhh------------hcC
Confidence 355666545556555553 34444444444332 2346799999999999976432 2211 111
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEe
Q 016375 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (390)
Q Consensus 85 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiD 164 (390)
-++-++.-+|..-|.-+ .+...+.+++.. ......+|.+|
T Consensus 495 nFlsvkgpEL~sk~vGe--------------------------------------SEr~ir~iF~kA--R~~aP~IiFfD 534 (693)
T KOG0730|consen 495 NFLSVKGPELFSKYVGE--------------------------------------SERAIREVFRKA--RQVAPCIIFFD 534 (693)
T ss_pred CeeeccCHHHHHHhcCc--------------------------------------hHHHHHHHHHHH--hhcCCeEEehh
Confidence 23444544553333222 222233333211 12235899999
Q ss_pred hhhhhcccc-------cHHHHHHHHHhCC---CCccEEEEeecCchh
Q 016375 165 EADRLLNDD-------FEKSLDEILNVIP---RMRQTYLFSATMTKK 201 (390)
Q Consensus 165 E~H~~~~~~-------~~~~~~~~~~~~~---~~~~~i~~saT~~~~ 201 (390)
|++.+.... ..+.+..++..+. ....++.+-||-.++
T Consensus 535 EiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd 581 (693)
T KOG0730|consen 535 EIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD 581 (693)
T ss_pred hHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChh
Confidence 999665432 3455556665543 334588899997664
No 413
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.94 E-value=0.017 Score=48.46 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=12.6
Q ss_pred EEEEcCCCCchhHHh
Q 016375 48 LIGLAQTGSGKTGAF 62 (390)
Q Consensus 48 ~li~~~tG~GKT~~~ 62 (390)
++|.|++|+|||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 378999999999753
No 414
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.88 E-value=0.052 Score=50.57 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=29.8
Q ss_pred HHhcCCCCCchHHHhhHHhHhcCC--CEEEEcCCCCchhHHhHHHHHHH
Q 016375 23 CENVGWKTPSKIQAEAIPHALEGK--DLIGLAQTGSGKTGAFALPILQA 69 (390)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~i~~~~--~~li~~~tG~GKT~~~~~~~~~~ 69 (390)
|.++|+ .+.|.+.+..+.... -+++.+|||||||.+. ..++..
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~ 265 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSR 265 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhc
Confidence 455665 677888887776543 3789999999999763 334443
No 415
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.86 E-value=0.089 Score=45.61 Aligned_cols=58 Identities=21% Similarity=0.135 Sum_probs=38.9
Q ss_pred CCCCCchHHHhhHHhHhcCC-CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 27 GWKTPSKIQAEAIPHALEGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 27 g~~~~~~~Q~~~~~~i~~~~-~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
.|..+.+.|.+.+..+.... ++++++.||||||.+. -++...+- +.-+++.+=.+.+|
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~~~i~---------~~eRvItiEDtaEL 212 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALSGFID---------SDERVITIEDTAEL 212 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHHhcCC---------CcccEEEEeehhhh
Confidence 34557888988887777655 9999999999999652 22222211 23367777666655
No 416
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.86 E-value=0.13 Score=45.89 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=20.4
Q ss_pred HhcCCCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 42 ALEGKDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
+-+|+..+|.+|.|+|||..+ ..+...+.
T Consensus 166 IGkGQR~lIvgppGvGKTTLa-K~Ian~I~ 194 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLL-QNIANSIT 194 (416)
T ss_pred cccCceEEEeCCCCCChhHHH-HHHHHHHH
Confidence 345899999999999999643 33444443
No 417
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.85 E-value=0.11 Score=48.10 Aligned_cols=61 Identities=15% Similarity=-0.016 Sum_probs=37.6
Q ss_pred hhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 37 EAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 37 ~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
+.+..+..|.-++|.|+||+|||..++-.+...+.. .+..+++++.--. ..+..+++....
T Consensus 187 ~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--------~g~~vl~~SlEm~-~~~i~~R~~~~~ 247 (434)
T TIGR00665 187 KLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIK--------EGKPVAFFSLEMS-AEQLAMRMLSSE 247 (434)
T ss_pred hhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHh--------CCCeEEEEeCcCC-HHHHHHHHHHHh
Confidence 333334445678999999999997665444444432 3556788876543 455555654443
No 418
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.29 Score=42.03 Aligned_cols=74 Identities=15% Similarity=0.067 Sum_probs=42.6
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHH-----------HHHHHhccCCCceEE
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS-----------EQFEALGSGISLRCA 114 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~-----------~~~~~~~~~~~~~~~ 114 (390)
+-+++++|||+|||.. +.++...+- .+......+-.+|=..+-+|-..|. +.++++..+.+.-++
T Consensus 178 RliLlhGPPGTGKTSL-CKaLaQkLS---IR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSL-CKALAQKLS---IRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred eEEEEeCCCCCChhHH-HHHHHHhhe---eeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence 4589999999999953 333333221 1112224444566566555555554 445566666666777
Q ss_pred EEecCCchH
Q 016375 115 VLVGGVDMM 123 (390)
Q Consensus 115 ~~~~~~~~~ 123 (390)
++.+.....
T Consensus 254 vLIDEVESL 262 (423)
T KOG0744|consen 254 VLIDEVESL 262 (423)
T ss_pred EEeHHHHHH
Confidence 777666544
No 419
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.81 E-value=0.054 Score=51.66 Aligned_cols=40 Identities=25% Similarity=0.211 Sum_probs=26.9
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEE
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 194 (390)
+++.+++|+||+=...+......+.+.+....+.+.++.+
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 5677899999998777766666666666555444434443
No 420
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.79 E-value=0.15 Score=47.13 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
+..++.||+|+|||.++.
T Consensus 40 ha~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLAR 57 (451)
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 358899999999997754
No 421
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.79 E-value=0.3 Score=45.87 Aligned_cols=52 Identities=19% Similarity=0.111 Sum_probs=37.6
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
+..+++.+|+|+|||..++..+.+.+ + .+.++++++-. +-..|..+.++.++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~-~--------~ge~~~y~s~e-Es~~~i~~~~~~lg 314 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENAC-A--------NKERAILFAYE-ESRAQLLRNAYSWG 314 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCeEEEEEee-CCHHHHHHHHHHcC
Confidence 46799999999999987655444433 2 45568888754 45588888887775
No 422
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.77 E-value=0.12 Score=51.15 Aligned_cols=86 Identities=16% Similarity=0.279 Sum_probs=63.6
Q ss_pred HHHHHHhhCCCceEEEecchhHHHHHHHHHHhcC-----Ccee-eccCCCCHHHHHHHHHHhccCCccEEEEeC-CCCCC
Q 016375 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLG-----QRAI-PISGHMSQSKRLGALNKFKAGECNILICTD-VASRG 316 (390)
Q Consensus 244 ~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~-----~~~~-~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~~~G 316 (390)
+..+.-...+.++++.+|+...+.+.++.|++.. ..+. .+|+.++..+++++++++.+|+++|+|+|. -+..-
T Consensus 116 ~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~ 195 (1187)
T COG1110 116 LMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKR 195 (1187)
T ss_pred HHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhh
Confidence 3444455567999999999999999999888753 3332 299999999999999999999999999986 33333
Q ss_pred CCC-C--CCCEEEEec
Q 016375 317 LDI-P--SVDMVINYD 329 (390)
Q Consensus 317 ~d~-~--~~~~vi~~~ 329 (390)
++. . +.+.++..|
T Consensus 196 ~e~L~~~kFdfifVDD 211 (1187)
T COG1110 196 FEELSKLKFDFIFVDD 211 (1187)
T ss_pred HHHhcccCCCEEEEcc
Confidence 332 1 355565544
No 423
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.73 E-value=0.32 Score=38.16 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=32.1
Q ss_pred CCccEEEEehhhhhcccccH--HHHHHHHHhCCCCccEEEEeecCchhHHHHHH
Q 016375 156 GTLKYLVLDEADRLLNDDFE--KSLDEILNVIPRMRQTYLFSATMTKKVKKLQR 207 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~--~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~ 207 (390)
..+++||+||+-.....++- +.+..+++..|....+|+-.-.+++.+.+.++
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 56899999999977665433 34556666666665455444445555544443
No 424
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.36 Score=43.03 Aligned_cols=88 Identities=17% Similarity=0.222 Sum_probs=56.2
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (390)
+.-++|-+++|.|||...+. +...+.+ .+ ++|+++---++ .|+.-+..+++...
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQ-va~~lA~--------~~-~vLYVsGEES~-~QiklRA~RL~~~~--------------- 146 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQ-VAARLAK--------RG-KVLYVSGEESL-QQIKLRADRLGLPT--------------- 146 (456)
T ss_pred ccEEEEccCCCCCHHHHHHH-HHHHHHh--------cC-cEEEEeCCcCH-HHHHHHHHHhCCCc---------------
Confidence 45689999999999976443 4444433 23 79999997554 88888888876321
Q ss_pred HHHhcCCCCCEEEeC---CchhHHHhhcCCCccCCCccEEEEehhhhhccc
Q 016375 125 QTLALGKRPHIVVAT---PGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND 172 (390)
Q Consensus 125 ~~~~~~~~~~i~i~t---~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~ 172 (390)
.++.+.. .+.+...+.+ .+++++|||-++.+...
T Consensus 147 --------~~l~l~aEt~~e~I~~~l~~------~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 147 --------NNLYLLAETNLEDIIAELEQ------EKPDLVVIDSIQTLYSE 183 (456)
T ss_pred --------cceEEehhcCHHHHHHHHHh------cCCCEEEEeccceeecc
Confidence 1222222 2233333333 34889999999977653
No 425
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.70 E-value=0.012 Score=46.68 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=28.4
Q ss_pred hcCCCCCEEEeCCchhHHHhhcCCCc-cCCCccEEEEehhhhhcc
Q 016375 128 ALGKRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLN 171 (390)
Q Consensus 128 ~~~~~~~i~i~t~~~l~~~~~~~~~~-~~~~~~~iIiDE~H~~~~ 171 (390)
.....++|+|+++..|+....+.... ....-.+|||||||++.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 34457999999999887654432211 123457999999997755
No 426
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.69 E-value=0.51 Score=36.54 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=34.0
Q ss_pred CCCccEEEEehhhhhccccc--HHHHHHHHHhCCCCccEEEEeecCchhHHHHHH
Q 016375 155 LGTLKYLVLDEADRLLNDDF--EKSLDEILNVIPRMRQTYLFSATMTKKVKKLQR 207 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~--~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~ 207 (390)
...++++|+||+-.....++ .+.+..+++..+....+|+-+-.+++.+...++
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 35689999999996655443 345666677777666555555555665555443
No 427
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.22 Score=47.88 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=29.0
Q ss_pred CCccEEEEehhhhhcc-----cccH----HHHHHHHHhC---C--CCccEEEEeecCchhHH
Q 016375 156 GTLKYLVLDEADRLLN-----DDFE----KSLDEILNVI---P--RMRQTYLFSATMTKKVK 203 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~-----~~~~----~~~~~~~~~~---~--~~~~~i~~saT~~~~~~ 203 (390)
....+|.+||.+.+.. .+.+ +.+.+++..+ . ....+..+.||-.|++-
T Consensus 763 A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLL 824 (953)
T KOG0736|consen 763 AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLL 824 (953)
T ss_pred cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcccc
Confidence 4478999999996543 2223 3333343332 2 33458888999877553
No 428
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.63 E-value=0.19 Score=50.77 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=66.6
Q ss_pred CCCceEEEecchhHHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CCCCCCCCCCCCEEE
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMVI 326 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~~~G~d~~~~~~vi 326 (390)
.+.+++|.+|+...|.+.++.+++. ++.+..+++..+..++.+.++.+.+|+.+|+|+|+ .+...+.+.++..+|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4678999999999999988887763 56778889999999999999999999999999997 555567888899888
Q ss_pred EecC
Q 016375 327 NYDI 330 (390)
Q Consensus 327 ~~~~ 330 (390)
+...
T Consensus 579 IDEa 582 (926)
T TIGR00580 579 IDEE 582 (926)
T ss_pred eecc
Confidence 7654
No 429
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.60 E-value=0.16 Score=47.81 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
+++++.+|+|+|||..+
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999764
No 430
>PF05729 NACHT: NACHT domain
Probab=94.57 E-value=0.45 Score=37.13 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=16.5
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
-++|.|++|+|||.... .++..+.
T Consensus 2 ~l~I~G~~G~GKStll~-~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR-KLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHH-HHHHHHH
Confidence 47899999999997543 3333333
No 431
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.56 E-value=0.27 Score=49.47 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCCchhHHhH
Q 016375 45 GKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~ 63 (390)
..+.++.||+|+|||..+-
T Consensus 200 ~~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAE 218 (821)
T ss_pred cCCeEEECCCCCCHHHHHH
Confidence 3589999999999997643
No 432
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=94.55 E-value=0.16 Score=42.50 Aligned_cols=86 Identities=29% Similarity=0.319 Sum_probs=61.2
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCC-chHHHHHhcC-CCCCEEEeCCchhHHHhhcCCCccCCC
Q 016375 80 VPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV-DMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGT 157 (390)
Q Consensus 80 ~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~i~i~t~~~l~~~~~~~~~~~~~~ 157 (390)
...+.+|||+.+--=+..+.+.++.+.. -+..+..+.+.. ...++...+. ...+|.||||+.+..++..+ .+.++.
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~-~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG-ALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC-CCCccc
Confidence 3567788888887777788888887731 123444455555 3333333333 36899999999999999775 477899
Q ss_pred ccEEEEehhh
Q 016375 158 LKYLVLDEAD 167 (390)
Q Consensus 158 ~~~iIiDE~H 167 (390)
+.+||+|--|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999877
No 433
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.50 E-value=0.31 Score=49.01 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=20.1
Q ss_pred HHhhHHhHhc------CCCEEEEcCCCCchhHHh
Q 016375 35 QAEAIPHALE------GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 35 Q~~~~~~i~~------~~~~li~~~tG~GKT~~~ 62 (390)
|.+.+..+.+ ..+.++.||+|+|||..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 5555555542 358999999999999654
No 434
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.49 E-value=0.11 Score=43.70 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=17.8
Q ss_pred hHhcCCCEEEEcCCCCchhHH
Q 016375 41 HALEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 41 ~i~~~~~~li~~~tG~GKT~~ 61 (390)
.+.+|+..+|.+|.|+|||..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHH
Confidence 445789999999999999953
No 435
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.49 E-value=0.081 Score=50.50 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=30.1
Q ss_pred HHhcCCCCCchHHHhhHHhHhcC--CCEEEEcCCCCchhHHhHHHHHHHH
Q 016375 23 CENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQAL 70 (390)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~i~~~--~~~li~~~tG~GKT~~~~~~~~~~~ 70 (390)
|.++|+ .+.|.+.+..+... ..+++.+|||||||.+. ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 456666 57777777766543 35789999999999763 4444443
No 436
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.48 E-value=0.96 Score=39.28 Aligned_cols=132 Identities=19% Similarity=0.266 Sum_probs=71.5
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHH
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (390)
.+++.+-.|+|||.+... +.+++.+ .+++|++.+- .....--.++++.|+...+..+.....+.+
T Consensus 141 Vil~vGVNG~GKTTTIaK-LA~~l~~--------~g~~VllaA~-DTFRAaAiEQL~~w~er~gv~vI~~~~G~D----- 205 (340)
T COG0552 141 VILFVGVNGVGKTTTIAK-LAKYLKQ--------QGKSVLLAAG-DTFRAAAIEQLEVWGERLGVPVISGKEGAD----- 205 (340)
T ss_pred EEEEEecCCCchHhHHHH-HHHHHHH--------CCCeEEEEec-chHHHHHHHHHHHHHHHhCCeEEccCCCCC-----
Confidence 388899999999987543 4444444 5666665554 344455556677777665566544211111
Q ss_pred HhcCCCCCEEEeCCchh-HHHhhcCCCccCCCccEEEEehhhhhccc-ccHHHHHHHHHhCCC----Ccc--EEEEeecC
Q 016375 127 LALGKRPHIVVATPGRL-MDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILNVIPR----MRQ--TYLFSATM 198 (390)
Q Consensus 127 ~~~~~~~~i~i~t~~~l-~~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~~~~~~~~----~~~--~i~~saT~ 198 (390)
|..+ ++-+.. ...+++++|++|=|=++-+. +.-..+..+.+...+ .++ ++.+-||.
T Consensus 206 -------------pAaVafDAi~~---Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 206 -------------PAAVAFDAIQA---AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred -------------cHHHHHHHHHH---HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 1111 112222 12456889999988776652 233344444443332 222 33346887
Q ss_pred chhHHHHHHHh
Q 016375 199 TKKVKKLQRAC 209 (390)
Q Consensus 199 ~~~~~~~~~~~ 209 (390)
.++.-...+.+
T Consensus 270 Gqnal~QAk~F 280 (340)
T COG0552 270 GQNALSQAKIF 280 (340)
T ss_pred ChhHHHHHHHH
Confidence 77655544443
No 437
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.47 E-value=0.28 Score=44.05 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=14.6
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
+..++.||+|+|||.++.
T Consensus 37 ~~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIAR 54 (355)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357999999999997643
No 438
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.46 E-value=0.11 Score=46.46 Aligned_cols=27 Identities=30% Similarity=0.149 Sum_probs=19.1
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
.+..+++.+|||||||.+ +.+++..+.
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 345689999999999965 344554443
No 439
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.43 E-value=0.25 Score=44.55 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=20.3
Q ss_pred HhHhcCCCEEEEcCCCCchhHHhHH
Q 016375 40 PHALEGKDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 40 ~~i~~~~~~li~~~tG~GKT~~~~~ 64 (390)
+.+.++.|+++.+|+|+|||..+..
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHH
Confidence 4455678999999999999976654
No 440
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.43 E-value=0.066 Score=49.65 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=24.6
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCC-ccEEEEeec
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM-RQTYLFSAT 197 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~-~~~i~~saT 197 (390)
..++.+.||||+|+++...|. ++++.+... .+++++=||
T Consensus 117 ~~ryKVyiIDEvHMLS~~afN----ALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFN----ALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHHHHH----HHhcccccCccCeEEEEec
Confidence 467899999999966555544 344444322 246666666
No 441
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.43 E-value=0.11 Score=41.43 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=32.2
Q ss_pred CCCccEEEEehhhhhcccccH--HHHHHHHHhCCCCccEEEEeec-CchhHHHHHH
Q 016375 155 LGTLKYLVLDEADRLLNDDFE--KSLDEILNVIPRMRQTYLFSAT-MTKKVKKLQR 207 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~--~~~~~~~~~~~~~~~~i~~saT-~~~~~~~~~~ 207 (390)
-..+++||+||+-...+.++- +.+..+++..|... -+.+|+- +++.+.+.++
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~-evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQ-HVVITGRGAPRELIEAAD 167 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCC-EEEEECCCCCHHHHHhCc
Confidence 356899999999977775543 34555666666655 4445544 4555554443
No 442
>PRK08760 replicative DNA helicase; Provisional
Probab=94.42 E-value=0.15 Score=47.61 Aligned_cols=116 Identities=17% Similarity=0.084 Sum_probs=60.8
Q ss_pred HhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCc
Q 016375 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 121 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~ 121 (390)
+..+.-++|.|.||.|||..++-.+...+.+ .+..|++++.--. ..|+..++.......+.... ..|...
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~--------~g~~V~~fSlEMs-~~ql~~Rl~a~~s~i~~~~i-~~g~l~ 295 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIK--------SKKGVAVFSMEMS-ASQLAMRLISSNGRINAQRL-RTGALE 295 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHh--------cCCceEEEeccCC-HHHHHHHHHHhhCCCcHHHH-hcCCCC
Confidence 3345668999999999997665544443333 3556777766433 46777776655443332211 112211
Q ss_pred hHHHHH------hcCCCCCEEEeC-----CchhHHHhhcCCCccCCCccEEEEehhhhhc
Q 016375 122 MMQQTL------ALGKRPHIVVAT-----PGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 170 (390)
Q Consensus 122 ~~~~~~------~~~~~~~i~i~t-----~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~ 170 (390)
...+. ....+..+.|.. ++.+...+.+.+ ....+++||||=.+.+.
T Consensus 296 -~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~--~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 296 -DEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLK--REHDLGLIVIDYLQLMS 352 (476)
T ss_pred -HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEecHHhcC
Confidence 11111 111234455442 334433333211 12347899999988664
No 443
>PRK07004 replicative DNA helicase; Provisional
Probab=94.37 E-value=0.27 Score=45.72 Aligned_cols=122 Identities=12% Similarity=0.032 Sum_probs=61.1
Q ss_pred hhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEE
Q 016375 37 EAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 116 (390)
Q Consensus 37 ~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 116 (390)
++...+..|.-+++.|.||.|||..++-.+...+.+ .+..+++++.- .-..|+..++-......+. ..+
T Consensus 205 ~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~--------~~~~v~~fSlE-M~~~ql~~R~la~~~~v~~--~~i 273 (460)
T PRK07004 205 RMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE--------YGLPVAVFSME-MPGTQLAMRMLGSVGRLDQ--HRM 273 (460)
T ss_pred ccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHH--------cCCeEEEEeCC-CCHHHHHHHHHHhhcCCCH--HHH
Confidence 334444455678999999999997655444443332 35567777664 3346666665432222211 111
Q ss_pred ecCCchHHHHHh------cCCCCCEEEe-----CCchhHHHhhcCCCccCCCccEEEEehhhhhc
Q 016375 117 VGGVDMMQQTLA------LGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 170 (390)
Q Consensus 117 ~~~~~~~~~~~~------~~~~~~i~i~-----t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~ 170 (390)
..+.-....+.. ...+..+.|. |+..+.....+... ....+++||||=.+.+.
T Consensus 274 ~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~-~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 274 RTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLAR-QCGKLGLIIIDYLQLMS 337 (460)
T ss_pred hcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEChhhhcc
Confidence 111211122211 1124556664 22333333222110 12247899999999665
No 444
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.48 Score=41.51 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.4
Q ss_pred cCCCEEEEcCCCCchhHHhH
Q 016375 44 EGKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~ 63 (390)
....+++.+|+|+|||..+-
T Consensus 126 p~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred CCccceecCCCCchHHHHHH
Confidence 34689999999999997643
No 445
>PRK08840 replicative DNA helicase; Provisional
Probab=94.36 E-value=0.5 Score=43.90 Aligned_cols=70 Identities=17% Similarity=-0.032 Sum_probs=42.8
Q ss_pred CCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 27 GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 27 g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
|+.+-++.-...+..+..++-+++.|.||.|||..++-.+...+.+ .+..+++++.- .-..|+..++-..
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~--------~~~~v~~fSlE-Ms~~ql~~Rlla~ 268 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD--------QDKPVLIFSLE-MPAEQLMMRMLAS 268 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh--------CCCeEEEEecc-CCHHHHHHHHHHh
Confidence 4444444444455555556778999999999997654444433322 35667888765 3356666665443
No 446
>CHL00176 ftsH cell division protein; Validated
Probab=94.34 E-value=0.41 Score=46.29 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
+++++.+|+|+|||..+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999764
No 447
>PHA02535 P terminase ATPase subunit; Provisional
Probab=94.33 E-value=0.52 Score=44.43 Aligned_cols=85 Identities=19% Similarity=0.054 Sum_probs=61.4
Q ss_pred CCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 15 ~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
+|++....|+..-...+.+||+.++..=..++.-++.-.=-.|||+.+..-++..++. .|...++++|+...
T Consensus 123 ~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~--------~G~nqiflSas~~Q 194 (581)
T PHA02535 123 ISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALL--------TGRNQIFLSASKAQ 194 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHh--------cCCceEEECCCHHH
Confidence 6777777777765668999999988662223445555567789998866445444444 35567999999999
Q ss_pred HHHHHHHHHHhcc
Q 016375 95 AIQISEQFEALGS 107 (390)
Q Consensus 95 ~~q~~~~~~~~~~ 107 (390)
+....+.+..+..
T Consensus 195 A~~f~~yi~~~a~ 207 (581)
T PHA02535 195 AHVFKQYIIAFAR 207 (581)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888877744
No 448
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.31 E-value=0.39 Score=48.30 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.5
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
.+++.||||+|||..+-
T Consensus 598 ~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 598 VFLLVGPSGVGKTETAL 614 (852)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 38999999999997653
No 449
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.30 E-value=0.4 Score=47.71 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
.++.+++.+|+|+|||..+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 3467999999999999653
No 450
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.27 E-value=1 Score=39.87 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=25.9
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEee
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSA 196 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 196 (390)
.....++||||+|.+.... ...+...++.-|....+++.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 3467899999999776543 3345555565555554555443
No 451
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.26 E-value=1.1 Score=43.84 Aligned_cols=106 Identities=19% Similarity=0.292 Sum_probs=63.7
Q ss_pred CCceEEEecchhHHHHHHHHHHhcC-------CceeeccCCCCHHHHHHHHHHhcc--------CCccEEEEeCCCCCCC
Q 016375 253 ASSTMVFTRTCDATRLLALMLRNLG-------QRAIPISGHMSQSKRLGALNKFKA--------GECNILICTDVASRGL 317 (390)
Q Consensus 253 ~~~~lvf~~~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~f~~--------~~~~ilv~t~~~~~G~ 317 (390)
...+|+|.++....+.+...++..+ ..-..+. --+..+-.+++..|.+ |..-..|+-...++|+
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vE-Pr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVE-PRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceec-cCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 4459999999988888766555421 1111111 1233333444444433 2223445557999999
Q ss_pred CCCC--CCEEEEecCCCCc--------------------------------------chhhhccccccCCCCcceEEEEe
Q 016375 318 DIPS--VDMVINYDIPTNS--------------------------------------KDYIHRVGRTARAGRTGVAISLV 357 (390)
Q Consensus 318 d~~~--~~~vi~~~~~~~~--------------------------------------~~~~Q~~GR~~R~~~~~~~i~~~ 357 (390)
|+.+ .+.||..+.|.-+ ...-|++||+.|..++=..+.++
T Consensus 640 DFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~ 719 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILC 719 (945)
T ss_pred CccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEe
Confidence 9965 7789998876311 12478999999986664444455
Q ss_pred cc
Q 016375 358 NQ 359 (390)
Q Consensus 358 ~~ 359 (390)
+.
T Consensus 720 D~ 721 (945)
T KOG1132|consen 720 DD 721 (945)
T ss_pred ec
Confidence 53
No 452
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.038 Score=47.10 Aligned_cols=57 Identities=21% Similarity=0.200 Sum_probs=34.4
Q ss_pred cCCcccCCCCHHHHHHHHhc--CCCCC--------chHHHhhHHh------HhcCCCEEEEcCCCCchhHHhH
Q 016375 7 VKTFKELGLRDELVEACENV--GWKTP--------SKIQAEAIPH------ALEGKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~--g~~~~--------~~~Q~~~~~~------i~~~~~~li~~~tG~GKT~~~~ 63 (390)
..+...+|-+.++.+.|... |.... +.|=..+-.. -+.+.++++.+|||||||+.+.
T Consensus 43 ~~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 43 EKELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred chhhccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHH
Confidence 34556788889988888763 43321 1111111100 0224689999999999998654
No 453
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.35 Score=44.47 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=23.9
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
++++++|+|+|||..++..+... .-+.+=+++|....
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S-----------~FPFvKiiSpe~mi 576 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSS-----------DFPFVKIISPEDMI 576 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhc-----------CCCeEEEeChHHcc
Confidence 59999999999996543322221 34456677775443
No 454
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.17 E-value=0.81 Score=44.55 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCC--CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcC
Q 016375 13 LGLRDELVEACENVGWKTPSKIQAEAIPHALEGK--DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (390)
Q Consensus 13 ~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~--~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 90 (390)
.+.+...-..+.....++...-|.+.+..+...+ .+++.|+=|=|||.+.-+++ ..+.+.. ....+++.+|
T Consensus 197 ~~~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~~------~~~~iiVTAP 269 (758)
T COG1444 197 PPLDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARLA------GSVRIIVTAP 269 (758)
T ss_pred CCCCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHhc------CCceEEEeCC
Confidence 4444333444555555555555666666666543 68999999999997655444 2222211 1347999999
Q ss_pred CHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhc
Q 016375 91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 170 (390)
Q Consensus 91 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~ 170 (390)
+.+=++...+.+.+-....+++..+.......... ...+...|=+.+|+... ..-+++|||||=-+
T Consensus 270 ~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~~~~--~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaI- 335 (758)
T COG1444 270 TPANVQTLFEFAGKGLEFLGYKRKVAPDALGEIRE--VSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAI- 335 (758)
T ss_pred CHHHHHHHHHHHHHhHHHhCCccccccccccceee--ecCCceeEEeeCcchhc-----------ccCCEEEEehhhcC-
Confidence 99988887777654333333322111111000000 00011223334443211 11679999998832
Q ss_pred ccccHHHHHHHHHhCCCCccEEEEeecCc
Q 016375 171 NDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (390)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 199 (390)
. ...+..+....+ .+++|.|..
T Consensus 336 p---lplL~~l~~~~~----rv~~sTTIh 357 (758)
T COG1444 336 P---LPLLHKLLRRFP----RVLFSTTIH 357 (758)
T ss_pred C---hHHHHHHHhhcC----ceEEEeeec
Confidence 2 234444444432 577888864
No 455
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.14 E-value=0.39 Score=43.37 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
+.+++.||+|+|||..+.
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368899999999997643
No 456
>PRK04328 hypothetical protein; Provisional
Probab=94.14 E-value=0.11 Score=43.87 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=35.0
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
.+..+++.+++|+|||..++..+.+.+. .+..+++++-. +-..+..+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~---------~ge~~lyis~e-e~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ---------MGEPGVYVALE-EHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh---------cCCcEEEEEee-CCHHHHHHHHHHcC
Confidence 3567999999999999876554554432 35557777643 33455666666654
No 457
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.19 Score=47.02 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
.+.+++++|+|+|||..+
T Consensus 223 prGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLA 240 (802)
T ss_pred CCceeeeCCCCccHHHHH
Confidence 367999999999999653
No 458
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.00 E-value=0.17 Score=43.12 Aligned_cols=39 Identities=5% Similarity=-0.162 Sum_probs=27.0
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCC
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT 91 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~ 91 (390)
.+.-.+|.+++|+|||..++..+.+.+. .+.++++++-.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~---------~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS---------RGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh---------CCCcEEEEEec
Confidence 4567999999999999876554444332 35567777743
No 459
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=94.00 E-value=0.1 Score=49.82 Aligned_cols=74 Identities=16% Similarity=-0.088 Sum_probs=54.0
Q ss_pred CCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 28 WKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 28 ~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
...+-.-|..+.......+-.++.+|+|+|||++.+.++- .++.+... .....++|++|=|+.-++|....+-.
T Consensus 376 ~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~-tLL~n~s~--~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 376 LVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVD-TLLLNSSG--YTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred ceeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHH-HHHhcccc--cccccceeeeehhhHHHHHHHHHHHh
Confidence 3335566999998888888999999999999998776544 44432211 12345689999999999998777653
No 460
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.97 E-value=1.2 Score=39.27 Aligned_cols=53 Identities=25% Similarity=0.341 Sum_probs=28.2
Q ss_pred CCccEEEEehhhhhccc-ccHHHHHHHHHhC------CCCccEEEEeecCchhHHHHHHH
Q 016375 156 GTLKYLVLDEADRLLND-DFEKSLDEILNVI------PRMRQTYLFSATMTKKVKKLQRA 208 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~-~~~~~~~~~~~~~------~~~~~~i~~saT~~~~~~~~~~~ 208 (390)
.++++||||=+-+.... .....+..+.... .+...++.++||...+.......
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~ 254 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA 254 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH
Confidence 45789999988755432 2223333333321 22234677888865543333333
No 461
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.3 Score=44.90 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=27.8
Q ss_pred CCCccEEEEehhhhhcccc-------cHHHHHHHHHhC---CCCccEEEEeecCch
Q 016375 155 LGTLKYLVLDEADRLLNDD-------FEKSLDEILNVI---PRMRQTYLFSATMTK 200 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~-------~~~~~~~~~~~~---~~~~~~i~~saT~~~ 200 (390)
-....+|.|||.+-+.... ....+.+++..+ ....-+|.+.||-.+
T Consensus 394 ~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfp 449 (752)
T KOG0734|consen 394 ARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFP 449 (752)
T ss_pred hcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCCh
Confidence 3457899999999654411 122333443333 334459999999655
No 462
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.37 Score=45.53 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=28.7
Q ss_pred CCccEEEEehhhhhccccc-------HHHHHHHHHhC---CCCccEEEEeecCchh
Q 016375 156 GTLKYLVLDEADRLLNDDF-------EKSLDEILNVI---PRMRQTYLFSATMTKK 201 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~-------~~~~~~~~~~~---~~~~~~i~~saT~~~~ 201 (390)
.....|.+||++.+....- .+.+.+++..+ .....++.+.||-.++
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~ 389 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD 389 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCcc
Confidence 3477999999997765221 24555655544 3444567777775553
No 463
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.91 E-value=0.087 Score=44.41 Aligned_cols=43 Identities=16% Similarity=-0.063 Sum_probs=30.2
Q ss_pred HhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCH
Q 016375 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 92 (390)
+..|.-.+|.|+||+|||..++..+...+.. .+.++++++...
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s~E~ 52 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFSLEM 52 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEeCCC
Confidence 4456779999999999997665545544433 266788888644
No 464
>PF12846 AAA_10: AAA-like domain
Probab=93.86 E-value=0.12 Score=45.12 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=28.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
+.|+++.|+||+|||.+.. .++..+.. .+..++++=|....
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~--------~g~~~~i~D~~g~~ 41 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR--------RGPRVVIFDPKGDY 41 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH--------cCCCEEEEcCCchH
Confidence 3689999999999997755 45555544 45667777665443
No 465
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.83 E-value=0.65 Score=47.00 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhHHhH
Q 016375 45 GKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~ 63 (390)
+.+.++.||+|+|||..+-
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3589999999999997643
No 466
>PRK13695 putative NTPase; Provisional
Probab=93.83 E-value=0.98 Score=35.79 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=13.8
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
.+++.+++|+|||..+.
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36889999999997644
No 467
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.85 Score=44.65 Aligned_cols=30 Identities=33% Similarity=0.357 Sum_probs=22.0
Q ss_pred HHHhhHHhHhc-------C--------CCEEEEcCCCCchhHHhH
Q 016375 34 IQAEAIPHALE-------G--------KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 34 ~Q~~~~~~i~~-------~--------~~~li~~~tG~GKT~~~~ 63 (390)
.|.+|+.++.+ | .++++.+|||.|||-.+-
T Consensus 495 GQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAk 539 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAK 539 (786)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHH
Confidence 56677766543 1 369999999999997653
No 468
>PRK06321 replicative DNA helicase; Provisional
Probab=93.78 E-value=0.42 Score=44.52 Aligned_cols=120 Identities=13% Similarity=0.002 Sum_probs=59.9
Q ss_pred hHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEe
Q 016375 38 AIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 117 (390)
Q Consensus 38 ~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 117 (390)
++..+..|.-++|.|.||.|||..++-.+...+.+ .+..+++++.- .-..|+.+++-......+. ..+.
T Consensus 219 ~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~--------~g~~v~~fSLE-Ms~~ql~~Rlla~~s~v~~--~~i~ 287 (472)
T PRK06321 219 MINGFSPSNLMILAARPAMGKTALALNIAENFCFQ--------NRLPVGIFSLE-MTVDQLIHRIICSRSEVES--KKIS 287 (472)
T ss_pred HhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--------cCCeEEEEecc-CCHHHHHHHHHHhhcCCCH--HHhh
Confidence 33334445668999999999997655433332222 35567777654 3356666666443322222 1111
Q ss_pred cCCchHHHHH------hcCCCCCEEEe-----CCchhHHHhhcCCCccCCCccEEEEehhhhhc
Q 016375 118 GGVDMMQQTL------ALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 170 (390)
Q Consensus 118 ~~~~~~~~~~------~~~~~~~i~i~-----t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~ 170 (390)
.+.-....+. ....+..+.|- |.+.+.....+.+ .-..+++||||=.+.+.
T Consensus 288 ~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~--~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 288 VGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMK--ESYDIQFLIIDYLQLLS 349 (472)
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHHcC
Confidence 1221111221 11123456554 2334433333321 12347899999998654
No 469
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.78 E-value=0.1 Score=46.58 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=19.1
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHH
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQAL 70 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~ 70 (390)
.+..+++.+|||||||.+ +.+++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 456799999999999965 34455444
No 470
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.77 E-value=0.1 Score=46.19 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=26.8
Q ss_pred HhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
+..+.++++.++||||||.. +.+++..+- +..+++.+=+..++
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~---------~~~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIP---------PQERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccC---------CCCCEEEECCCccc
Confidence 34578999999999999965 333333221 23345555565554
No 471
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.70 E-value=0.13 Score=48.18 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=38.4
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhcc
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 107 (390)
.+...+|.+++|+|||..++..+.+-+.+ .+.++++++-. +-..++.+.+..++-
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~--------~ge~~lyvs~e-E~~~~l~~~~~~~G~ 74 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH--------FDEPGVFVTFE-ESPQDIIKNARSFGW 74 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEEEEe-cCHHHHHHHHHHcCC
Confidence 45679999999999998766555544433 24557888764 555777777777653
No 472
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.69 E-value=0.73 Score=46.56 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.+.++.||+|+|||..+
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999764
No 473
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=93.69 E-value=0.12 Score=51.47 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=54.2
Q ss_pred CccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCC--Ccc--------eEEEEeccccHHHHHHHHHHh
Q 016375 303 ECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG--RTG--------VAISLVNQYELEWYLQIEKLI 372 (390)
Q Consensus 303 ~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~--~~~--------~~i~~~~~~~~~~~~~~~~~~ 372 (390)
..+++++.+++.+|||.|++-+++.+....|...-.|.+||+.|.. +.| .-.++++....++...+.+-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5678999999999999999999999998899999999999999972 111 234445566666666665444
No 474
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.68 E-value=0.17 Score=40.66 Aligned_cols=31 Identities=35% Similarity=0.300 Sum_probs=25.0
Q ss_pred CchHHHhhHHhHh-cCCCEEEEcCCCCchhHH
Q 016375 31 PSKIQAEAIPHAL-EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 31 ~~~~Q~~~~~~i~-~~~~~li~~~tG~GKT~~ 61 (390)
+.+.|.+.+.... .+..+++.+|||+|||..
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 5777877776655 467899999999999965
No 475
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.63 E-value=0.098 Score=50.13 Aligned_cols=62 Identities=24% Similarity=0.425 Sum_probs=48.9
Q ss_pred HHHhccCCccEEEEeCCCCCCCCCCC--------CCEEEEecCCCCcchhhhccccccCCCCc-ceEEEEe
Q 016375 296 LNKFKAGECNILICTDVASRGLDIPS--------VDMVINYDIPTNSKDYIHRVGRTARAGRT-GVAISLV 357 (390)
Q Consensus 296 ~~~f~~~~~~ilv~t~~~~~G~d~~~--------~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~-~~~i~~~ 357 (390)
-++|-+|+-.|-|-+.+.+.|+.+.. -++-|.+..|||.+..+|..||.+|.++- ++-++|+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFl 920 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFL 920 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEE
Confidence 35788899889898999999999853 23557789999999999999999998642 4444443
No 476
>PRK08006 replicative DNA helicase; Provisional
Probab=93.56 E-value=0.47 Score=44.21 Aligned_cols=60 Identities=17% Similarity=-0.053 Sum_probs=37.7
Q ss_pred hhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 37 EAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 37 ~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
..+..+..|.-++|.|.||.|||..++-.+...+.+ .+..|++++.- .-..|+..++-..
T Consensus 216 ~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~--------~g~~V~~fSlE-M~~~ql~~Rlla~ 275 (471)
T PRK08006 216 KKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML--------QDKPVLIFSLE-MPGEQIMMRMLAS 275 (471)
T ss_pred HhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEecc-CCHHHHHHHHHHH
Confidence 333444455678999999999997655444443322 35667777765 4456666666543
No 477
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.55 E-value=1.4 Score=39.47 Aligned_cols=17 Identities=35% Similarity=0.280 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCchhHH
Q 016375 45 GKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~ 61 (390)
.+.+.+.|++|.|||+.
T Consensus 62 ~~GlYl~G~vG~GKT~L 78 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML 78 (362)
T ss_pred CceEEEECCCCCchhHH
Confidence 35799999999999964
No 478
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.51 E-value=0.21 Score=41.50 Aligned_cols=53 Identities=23% Similarity=0.178 Sum_probs=36.1
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
.+..+++.+++|+|||..++..+.+.+. .+..++++..... .++..+.+..++
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~---------~g~~~~y~s~e~~-~~~l~~~~~~~~ 67 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK---------NGEKAMYISLEER-EERILGYAKSKG 67 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---------CCCeEEEEECCCC-HHHHHHHHHHcC
Confidence 3567899999999999765544443332 4556788877544 577777776654
No 479
>PRK13764 ATPase; Provisional
Probab=93.48 E-value=0.21 Score=47.52 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=19.8
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
.+.++++.+|||||||... .+++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3578999999999999653 44555443
No 480
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.46 E-value=0.29 Score=50.72 Aligned_cols=79 Identities=16% Similarity=0.121 Sum_probs=64.9
Q ss_pred CCCceEEEecchhHHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CCCCCCCCCCCCEEE
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMVI 326 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~~~G~d~~~~~~vi 326 (390)
.+.+++|.+|+...+.+.++.+.+. ++.+..+++..+..++.++++.+.+|.++|+|+|+ .+...+.+.++..+|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 5778999999999999998888753 45677788889999999999999999999999997 445556777888888
Q ss_pred EecC
Q 016375 327 NYDI 330 (390)
Q Consensus 327 ~~~~ 330 (390)
+...
T Consensus 728 IDEa 731 (1147)
T PRK10689 728 VDEE 731 (1147)
T ss_pred Eech
Confidence 6543
No 481
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=93.42 E-value=0.22 Score=48.94 Aligned_cols=71 Identities=24% Similarity=0.175 Sum_probs=52.4
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhcc
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 107 (390)
.|.+-|++++.+. ...++|.++.|||||.+...-+.+.+....- ....+|.++=|+.-+.+..+++..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v-----~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGV-----DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCc-----ChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999999776 5678999999999998865555544443221 233478888888888888888887664
No 482
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=1.2 Score=39.51 Aligned_cols=131 Identities=10% Similarity=0.156 Sum_probs=67.2
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHH
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (390)
-+++.+-.|+|||.+... +...+.+ .++++.++|.. ....--..+++.......+++.. ..+...+
T Consensus 103 VimfVGLqG~GKTTtc~K-lA~y~kk--------kG~K~~LvcaD-TFRagAfDQLkqnA~k~~iP~yg--syte~dp-- 168 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTK-LAYYYKK--------KGYKVALVCAD-TFRAGAFDQLKQNATKARVPFYG--SYTEADP-- 168 (483)
T ss_pred EEEEEeccCCCcceeHHH-HHHHHHh--------cCCceeEEeec-ccccchHHHHHHHhHhhCCeeEe--cccccch--
Confidence 378889999999976332 2222222 56666666653 12222334444444333343332 2121111
Q ss_pred HhcCCCCCEEEeCCchhH-HHhhcCCCccCCCccEEEEehhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCchhHHH
Q 016375 127 LALGKRPHIVVATPGRLM-DHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKK 204 (390)
Q Consensus 127 ~~~~~~~~i~i~t~~~l~-~~~~~~~~~~~~~~~~iIiDE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~ 204 (390)
-.+. .-+. .+.-.++++||+|=.-+.-. .+.-+.+.++.+.+.+..-+..|-|+.....+.
T Consensus 169 --------------v~ia~egv~---~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~ 231 (483)
T KOG0780|consen 169 --------------VKIASEGVD---RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA 231 (483)
T ss_pred --------------HHHHHHHHH---HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence 1111 1111 13345688899887654433 334456667777777666566667776665554
Q ss_pred HHHH
Q 016375 205 LQRA 208 (390)
Q Consensus 205 ~~~~ 208 (390)
..+.
T Consensus 232 Qa~a 235 (483)
T KOG0780|consen 232 QARA 235 (483)
T ss_pred HHHH
Confidence 4443
No 483
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.34 E-value=0.97 Score=38.01 Aligned_cols=59 Identities=17% Similarity=0.054 Sum_probs=33.5
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhc----CCCCCCceEEEEcCCHHHHHHHHHHHHHhcc
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAEN----QRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~----~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 107 (390)
-.++.+|.|+|||..++..++... .+..- .....+.+|+++.--... .+..+++..+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va-~G~~~~g~~~~~~~~~~Vlyi~~Ed~~-~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA-LGKNLFGGGLKVTEPGRVVYLSAEDPR-EEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh-cCccccCCccccCCCceEEEEECCCCH-HHHHHHHHHHHh
Confidence 468999999999987655444332 21111 111245678888854332 344555555443
No 484
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.34 E-value=0.22 Score=42.56 Aligned_cols=55 Identities=16% Similarity=0.072 Sum_probs=37.1
Q ss_pred hcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhcc
Q 016375 43 LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 107 (390)
-++..+++.+++|+|||..++..+...+. .+.++++++-. +...+..+.+..++-
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~---------~ge~vlyvs~~-e~~~~l~~~~~~~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAR---------EGEPVLYVSTE-ESPEELLENARSFGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHh---------cCCcEEEEEec-CCHHHHHHHHHHcCC
Confidence 34678999999999999765554444332 35567777764 445667777766543
No 485
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=93.26 E-value=0.68 Score=40.78 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=24.2
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
.....++||||+|.+..... ..+...++.-|....+++.|
T Consensus 91 ~~~~kv~iI~~ad~m~~~a~-naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQAQ-NAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHHHH-HHHHHHhcCCCCCeEEEEEe
Confidence 35678999999997755443 34445555545455344433
No 486
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.21 E-value=0.15 Score=54.23 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=28.0
Q ss_pred CCccEEEEehhhhhcccccHHH-HHHHHHhCC------CCccEEEEeecCchh
Q 016375 156 GTLKYLVLDEADRLLNDDFEKS-LDEILNVIP------RMRQTYLFSATMTKK 201 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~-~~~~~~~~~------~~~~~i~~saT~~~~ 201 (390)
....+|.|||+|.+...+-... +..++..+. ....++.+.||-.++
T Consensus 1731 ~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD 1783 (2281)
T CHL00206 1731 MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQ 1783 (2281)
T ss_pred CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcc
Confidence 3478999999997765432212 334443332 234588899996553
No 487
>PRK05748 replicative DNA helicase; Provisional
Probab=93.19 E-value=0.4 Score=44.59 Aligned_cols=58 Identities=12% Similarity=-0.058 Sum_probs=35.9
Q ss_pred hhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHH
Q 016375 37 EAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (390)
Q Consensus 37 ~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 103 (390)
+++..+..|.-++|.|.||.|||..++-.+...+.+ .+..+++++.-- -..|+..++.
T Consensus 195 ~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~--------~g~~v~~fSlEm-s~~~l~~R~l 252 (448)
T PRK05748 195 KMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATK--------TDKNVAIFSLEM-GAESLVMRML 252 (448)
T ss_pred HhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh--------CCCeEEEEeCCC-CHHHHHHHHH
Confidence 333334445679999999999997665444443322 355677776543 3456666653
No 488
>PRK08506 replicative DNA helicase; Provisional
Probab=93.19 E-value=0.29 Score=45.67 Aligned_cols=57 Identities=21% Similarity=0.035 Sum_probs=36.5
Q ss_pred HHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 39 IPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 39 ~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
...+..|.-+++.|.||.|||..++-.+...+ . .+..+++++.- .-..|+..++-..
T Consensus 186 ~~G~~~G~LivIaarpg~GKT~fal~ia~~~~-~--------~g~~V~~fSlE-Ms~~ql~~Rlla~ 242 (472)
T PRK08506 186 TKGFNKGDLIIIAARPSMGKTTLCLNMALKAL-N--------QDKGVAFFSLE-MPAEQLMLRMLSA 242 (472)
T ss_pred cCCCCCCceEEEEcCCCCChHHHHHHHHHHHH-h--------cCCcEEEEeCc-CCHHHHHHHHHHH
Confidence 33344456789999999999976655444432 2 45567777665 4456666666443
No 489
>PRK05636 replicative DNA helicase; Provisional
Probab=93.18 E-value=0.75 Score=43.26 Aligned_cols=115 Identities=16% Similarity=0.073 Sum_probs=56.6
Q ss_pred hcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCch
Q 016375 43 LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 122 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (390)
..+.-+++.|.||.|||..++-.+...+.+ .+..+++++.- .-..|+..++-......+.. .+..+.-.
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~--------~g~~v~~fSlE-Ms~~ql~~R~ls~~s~v~~~--~i~~g~l~ 331 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIK--------HNKASVIFSLE-MSKSEIVMRLLSAEAEVRLS--DMRGGKMD 331 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEEee-CCHHHHHHHHHHHhcCCCHH--HHhcCCCC
Confidence 334568899999999997655444333323 34567777553 33455555553332222221 11122211
Q ss_pred HHHHHh------cCCCCCEEEeC-----CchhHHHhhcCCCccCCCccEEEEehhhhhc
Q 016375 123 MQQTLA------LGKRPHIVVAT-----PGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 170 (390)
Q Consensus 123 ~~~~~~------~~~~~~i~i~t-----~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~ 170 (390)
...+.. ...+..+.|-- .+.+.....+.+ .-..+++||||=.|.+.
T Consensus 332 ~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~--~~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 332 EDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLK--QKHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcC
Confidence 112111 12234555542 223333222211 11347899999999765
No 490
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.10 E-value=3.4 Score=38.82 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=64.7
Q ss_pred CCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CCCCC------C-CCCCCCE
Q 016375 253 ASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRG------L-DIPSVDM 324 (390)
Q Consensus 253 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~~~G------~-d~~~~~~ 324 (390)
+..++|.+|+++.+.+..+.|...++.+..+++..+..++..++..+.++..+++++|+ .+... + ...+++.
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 56789999999999999999999999999999999999888999999999999999997 22221 2 4456788
Q ss_pred EEEecCC
Q 016375 325 VINYDIP 331 (390)
Q Consensus 325 vi~~~~~ 331 (390)
+|+.+..
T Consensus 131 iViDEaH 137 (470)
T TIGR00614 131 IAVDEAH 137 (470)
T ss_pred EEEeCCc
Confidence 8876654
No 491
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.05 E-value=0.98 Score=40.69 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=68.6
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHH
Q 016375 48 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 127 (390)
Q Consensus 48 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (390)
+++++=-|+|||.++.. +..++.+ .++++++++-. .-..--.++++.++...++.+.....+.+...-
T Consensus 103 ImmvGLQGsGKTTt~~K-LA~~lkk--------~~~kvllVaaD-~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~I-- 170 (451)
T COG0541 103 ILMVGLQGSGKTTTAGK-LAKYLKK--------KGKKVLLVAAD-TYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEI-- 170 (451)
T ss_pred EEEEeccCCChHhHHHH-HHHHHHH--------cCCceEEEecc-cCChHHHHHHHHHHHHcCCceecCCCCCCHHHH--
Confidence 78889999999987543 2333333 35555655542 111223345555555545555433111111110
Q ss_pred hcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCchhHHHHH
Q 016375 128 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQ 206 (390)
Q Consensus 128 ~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~ 206 (390)
..+-+.. +....+++||+|=+=++.- ...-..+.++...+++..-++.+-|+.........
T Consensus 171 ---------------ak~al~~---ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A 232 (451)
T COG0541 171 ---------------AKAALEK---AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTA 232 (451)
T ss_pred ---------------HHHHHHH---HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHH
Confidence 0111111 1233467888887754432 44555666777777776656666677666555444
Q ss_pred HHh
Q 016375 207 RAC 209 (390)
Q Consensus 207 ~~~ 209 (390)
+.+
T Consensus 233 ~aF 235 (451)
T COG0541 233 KAF 235 (451)
T ss_pred HHH
Confidence 443
No 492
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.98 E-value=0.27 Score=44.15 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=17.2
Q ss_pred HhcCCCEEEEcCCCCchhHH
Q 016375 42 ALEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~ 61 (390)
+-.|+.++|.+|+|+|||..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred eCCCCEEEEECCCCCChhHH
Confidence 44688999999999999964
No 493
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.97 E-value=0.13 Score=43.86 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=20.8
Q ss_pred hhHHhHhcCCCEEEEcCCCCchhHHhH
Q 016375 37 EAIPHALEGKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 37 ~~~~~i~~~~~~li~~~tG~GKT~~~~ 63 (390)
.+...+..+.++++.+|+|+|||..+.
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 334445567899999999999997654
No 494
>PRK09087 hypothetical protein; Validated
Probab=92.93 E-value=0.39 Score=39.95 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=22.6
Q ss_pred cEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecC
Q 016375 159 KYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (390)
Q Consensus 159 ~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 198 (390)
+++++|++|.... ....+..+++.+......+++|++.
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~ 126 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRL 126 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCC
Confidence 3799999995532 2345666666555433355565553
No 495
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.81 E-value=0.64 Score=36.66 Aligned_cols=47 Identities=6% Similarity=0.029 Sum_probs=29.9
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.++|.+++|||||..+...+. . .+..++++......-.++.+++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~-~-----------~~~~~~~iat~~~~~~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA-Q-----------SGLQVLYIATAQPFDDEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH-H-----------cCCCcEeCcCCCCChHHHHHHHHHH
Confidence 478999999999976443221 1 1233567776666666666666554
No 496
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.78 E-value=0.13 Score=45.47 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=16.4
Q ss_pred hcCCCEEEEcCCCCchhHH
Q 016375 43 LEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~ 61 (390)
..+.++++.++||||||..
T Consensus 158 ~~~~nili~G~tgSGKTTl 176 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTF 176 (332)
T ss_pred HcCCcEEEECCCCCCHHHH
Confidence 3567999999999999965
No 497
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=92.75 E-value=1.3 Score=34.81 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=27.8
Q ss_pred CCCccEEEEehhhhhcccccH--HHHHHHHHhCCCCccEEEEeecCchhHHHHH
Q 016375 155 LGTLKYLVLDEADRLLNDDFE--KSLDEILNVIPRMRQTYLFSATMTKKVKKLQ 206 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~--~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~ 206 (390)
-..+++||+||+-.....++- +.+..++...|....+|+-.-.+++.+...+
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 356899999999977775543 3455666666665544444344455554444
No 498
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=92.72 E-value=0.55 Score=46.96 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+++.+|+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999654
No 499
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.70 E-value=0.17 Score=43.52 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=26.2
Q ss_pred hcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 43 LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
..+.++++.|+||||||... .+++..+.. ...+++.+-...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~--------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPP--------EDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHT--------TTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhccc--------cccceEEeccccce
Confidence 34678999999999999753 334443322 12455666555444
No 500
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.61 E-value=0.13 Score=46.74 Aligned_cols=49 Identities=35% Similarity=0.313 Sum_probs=35.4
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
|+++.||||+|||..+.+|.+.. ....++++-|--++........+..+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~-----------~~~s~vv~D~Kge~~~~t~~~r~~~G 49 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT-----------WPGSVVVLDPKGENFELTSEHRRALG 49 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc-----------CCCCEEEEccchhHHHHHHHHHHHcC
Confidence 57899999999998876665432 23457888888888777666665543
Done!