Query 016375
Match_columns 390
No_of_seqs 149 out of 1502
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 12:32:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.5E-58 8.7E-63 421.1 41.1 373 5-380 53-428 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 1.1E-57 3.7E-62 416.4 36.5 372 6-384 35-407 (410)
3 1s2m_A Putative ATP-dependent 100.0 2.1E-56 7.3E-61 406.6 41.5 371 6-384 19-389 (400)
4 2i4i_A ATP-dependent RNA helic 100.0 1.7E-56 5.8E-61 409.6 38.1 375 4-379 11-402 (417)
5 3eiq_A Eukaryotic initiation f 100.0 2.9E-56 9.8E-61 407.8 35.6 373 6-385 38-412 (414)
6 1xti_A Probable ATP-dependent 100.0 5.4E-55 1.9E-59 396.3 39.3 368 8-382 8-380 (391)
7 1hv8_A Putative ATP-dependent 100.0 1.5E-54 5.1E-59 390.2 37.9 362 6-381 4-366 (367)
8 3fht_A ATP-dependent RNA helic 100.0 6.3E-54 2.1E-58 392.1 38.3 369 6-383 23-403 (412)
9 1fuu_A Yeast initiation factor 100.0 1.7E-56 5.8E-61 406.7 20.5 372 5-384 18-390 (394)
10 3pey_A ATP-dependent RNA helic 100.0 6.9E-54 2.4E-58 389.7 36.9 366 7-383 4-381 (395)
11 2z0m_A 337AA long hypothetical 100.0 7.6E-52 2.6E-56 368.2 34.4 336 15-374 1-336 (337)
12 3sqw_A ATP-dependent RNA helic 100.0 1.2E-51 4E-56 390.9 34.1 370 7-378 16-416 (579)
13 3fmp_B ATP-dependent RNA helic 100.0 1.1E-53 3.8E-58 396.8 19.1 368 7-383 91-470 (479)
14 3i5x_A ATP-dependent RNA helic 100.0 9.3E-51 3.2E-55 384.8 35.0 363 15-379 79-468 (563)
15 3fho_A ATP-dependent RNA helic 100.0 6.1E-52 2.1E-56 385.9 20.4 364 10-384 121-495 (508)
16 1oyw_A RECQ helicase, ATP-depe 100.0 1.8E-48 6.2E-53 362.2 33.5 338 8-368 2-351 (523)
17 2v1x_A ATP-dependent DNA helic 100.0 1.9E-48 6.4E-53 365.5 32.9 333 11-367 24-381 (591)
18 3oiy_A Reverse gyrase helicase 100.0 5.6E-47 1.9E-51 345.6 26.5 336 18-383 9-388 (414)
19 2ykg_A Probable ATP-dependent 100.0 3.7E-45 1.3E-49 355.0 24.7 343 20-368 3-524 (696)
20 2va8_A SSO2462, SKI2-type heli 100.0 1.1E-43 3.8E-48 344.5 34.7 340 4-362 4-410 (715)
21 1wp9_A ATP-dependent RNA helic 100.0 7.5E-44 2.6E-48 332.9 31.8 324 30-365 9-480 (494)
22 2zj8_A DNA helicase, putative 100.0 3E-44 1E-48 348.3 29.8 336 9-362 2-389 (720)
23 4a2p_A RIG-I, retinoic acid in 100.0 2E-44 7E-49 341.7 26.0 331 26-363 3-511 (556)
24 3tbk_A RIG-I helicase domain; 100.0 7.5E-44 2.6E-48 337.9 27.6 333 30-368 4-515 (555)
25 4a2q_A RIG-I, retinoic acid in 100.0 1.3E-43 4.4E-48 347.0 28.7 332 25-363 243-752 (797)
26 2p6r_A Afuhel308 helicase; pro 100.0 1.4E-43 4.9E-48 342.6 26.7 335 9-362 2-390 (702)
27 4a2w_A RIG-I, retinoic acid in 100.0 1.4E-42 4.7E-47 342.9 26.6 332 26-363 244-752 (936)
28 3l9o_A ATP-dependent RNA helic 100.0 7.8E-43 2.7E-47 347.1 24.9 331 8-361 162-598 (1108)
29 2xgj_A ATP-dependent RNA helic 100.0 1.8E-41 6.1E-46 334.6 33.2 321 23-367 80-507 (1010)
30 4ddu_A Reverse gyrase; topoiso 100.0 8.8E-42 3E-46 339.5 27.8 324 20-373 68-503 (1104)
31 4gl2_A Interferon-induced heli 100.0 2.7E-42 9.1E-47 335.2 22.9 324 30-359 7-518 (699)
32 1gku_B Reverse gyrase, TOP-RG; 100.0 4.9E-42 1.7E-46 341.6 21.4 321 24-374 52-468 (1054)
33 1gm5_A RECG; helicase, replica 100.0 5.4E-41 1.8E-45 321.3 24.8 320 17-362 356-699 (780)
34 2oca_A DAR protein, ATP-depend 100.0 1.2E-41 4E-46 318.7 18.8 309 30-358 113-453 (510)
35 2eyq_A TRCF, transcription-rep 100.0 1.1E-39 3.7E-44 326.5 32.1 324 12-361 585-923 (1151)
36 4a4z_A Antiviral helicase SKI2 100.0 5.7E-40 1.9E-44 323.9 27.9 313 25-358 35-490 (997)
37 2fwr_A DNA repair protein RAD2 100.0 1.3E-40 4.4E-45 308.6 14.8 296 30-364 93-458 (472)
38 1tf5_A Preprotein translocase 100.0 3E-38 1E-42 296.7 30.2 321 25-361 79-546 (844)
39 4f92_B U5 small nuclear ribonu 100.0 4.1E-37 1.4E-41 316.2 32.4 340 17-368 913-1316(1724)
40 3dmq_A RNA polymerase-associat 100.0 7E-38 2.4E-42 309.7 22.8 332 30-372 153-625 (968)
41 4f92_B U5 small nuclear ribonu 100.0 1.8E-37 6.2E-42 318.9 25.3 336 27-368 76-481 (1724)
42 2fsf_A Preprotein translocase 100.0 1.1E-36 3.8E-41 285.3 28.1 322 24-361 69-584 (853)
43 2whx_A Serine protease/ntpase/ 100.0 5.9E-39 2E-43 302.0 12.1 314 13-372 155-493 (618)
44 1nkt_A Preprotein translocase 100.0 6.4E-36 2.2E-40 280.5 32.4 322 25-362 107-619 (922)
45 2jlq_A Serine protease subunit 100.0 6.3E-38 2.1E-42 286.9 17.1 287 27-359 1-310 (451)
46 3h1t_A Type I site-specific re 100.0 4E-37 1.4E-41 292.4 20.8 313 30-358 178-556 (590)
47 1z63_A Helicase of the SNF2/RA 100.0 6.4E-36 2.2E-40 279.1 28.2 311 30-363 37-456 (500)
48 1yks_A Genome polyprotein [con 100.0 2.4E-38 8.1E-43 288.3 11.2 278 41-372 4-314 (440)
49 2xau_A PRE-mRNA-splicing facto 100.0 7.1E-37 2.4E-41 294.9 20.8 336 4-362 68-445 (773)
50 2wv9_A Flavivirin protease NS2 100.0 6.8E-38 2.3E-42 296.5 11.8 305 23-372 203-548 (673)
51 3o8b_A HCV NS3 protease/helica 100.0 7E-38 2.4E-42 291.8 11.2 293 30-378 217-536 (666)
52 2z83_A Helicase/nucleoside tri 100.0 2.1E-36 7.1E-41 277.3 17.2 279 37-360 13-313 (459)
53 3mwy_W Chromo domain-containin 100.0 1.1E-34 3.8E-39 283.1 28.4 330 30-374 236-700 (800)
54 2v6i_A RNA helicase; membrane, 100.0 2.6E-35 9E-40 267.8 21.3 269 44-357 1-287 (431)
55 3ber_A Probable ATP-dependent 100.0 1.5E-34 5.2E-39 243.8 23.2 209 4-218 39-247 (249)
56 3fe2_A Probable ATP-dependent 100.0 2.8E-34 9.7E-39 241.8 22.0 215 4-220 25-239 (242)
57 1vec_A ATP-dependent RNA helic 100.0 1E-33 3.4E-38 232.9 24.1 202 8-216 3-205 (206)
58 2pl3_A Probable ATP-dependent 100.0 1.1E-33 3.9E-38 237.5 24.7 213 4-219 21-233 (236)
59 1z3i_X Similar to RAD54-like; 100.0 4.5E-33 1.5E-37 265.2 29.8 324 30-363 55-531 (644)
60 3iuy_A Probable ATP-dependent 100.0 7E-34 2.4E-38 237.5 21.4 212 4-217 15-227 (228)
61 1q0u_A Bstdead; DEAD protein, 100.0 6.4E-34 2.2E-38 236.1 20.1 207 7-220 3-213 (219)
62 3rc3_A ATP-dependent RNA helic 100.0 2.6E-33 8.9E-38 264.3 26.2 289 39-373 149-457 (677)
63 1qde_A EIF4A, translation init 100.0 1.5E-33 5.3E-38 234.9 21.9 207 5-219 11-217 (224)
64 3bor_A Human initiation factor 100.0 1.2E-33 4.2E-38 237.0 20.5 207 5-218 27-234 (237)
65 2oxc_A Probable ATP-dependent 100.0 3.3E-33 1.1E-37 233.4 22.2 205 5-217 21-227 (230)
66 1wrb_A DJVLGB; RNA helicase, D 100.0 2.4E-33 8.3E-38 238.0 21.2 217 6-223 21-244 (253)
67 2gxq_A Heat resistant RNA depe 100.0 5.9E-33 2E-37 228.5 21.2 204 9-218 2-205 (207)
68 3ly5_A ATP-dependent RNA helic 100.0 6.2E-33 2.1E-37 235.8 21.2 205 8-214 52-258 (262)
69 1t6n_A Probable ATP-dependent 100.0 1.8E-32 6.1E-37 227.7 20.8 205 6-217 12-219 (220)
70 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.9E-32 1E-36 267.6 25.1 311 30-358 271-707 (1038)
71 3fmo_B ATP-dependent RNA helic 100.0 2.7E-32 9.1E-37 236.0 21.0 205 6-219 90-298 (300)
72 3jux_A Protein translocase sub 100.0 2.9E-30 9.9E-35 237.3 33.0 333 25-375 71-609 (822)
73 3dkp_A Probable ATP-dependent 100.0 1.1E-31 3.7E-36 226.7 19.0 212 4-220 21-242 (245)
74 2ipc_A Preprotein translocase 100.0 6E-26 2.1E-30 212.7 27.9 132 25-170 75-215 (997)
75 2hjv_A ATP-dependent RNA helic 100.0 7.8E-27 2.7E-31 183.4 18.5 156 225-380 7-162 (163)
76 1c4o_A DNA nucleotide excision 100.0 7.1E-26 2.4E-30 215.4 28.5 117 252-369 438-559 (664)
77 1fuk_A Eukaryotic initiation f 99.9 1.8E-26 6E-31 181.9 18.6 158 227-384 3-161 (165)
78 2rb4_A ATP-dependent RNA helic 99.9 3.2E-26 1.1E-30 182.3 17.4 160 225-384 5-171 (175)
79 1t5i_A C_terminal domain of A 99.9 2.4E-26 8.3E-31 182.0 15.6 157 226-382 4-161 (172)
80 2d7d_A Uvrabc system protein B 99.9 3.3E-24 1.1E-28 203.9 30.6 116 252-368 444-564 (661)
81 3eaq_A Heat resistant RNA depe 99.9 2E-25 7E-30 182.9 18.9 155 229-383 7-161 (212)
82 2p6n_A ATP-dependent RNA helic 99.9 6.1E-26 2.1E-30 182.4 13.8 172 207-379 9-181 (191)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 8.2E-26 2.8E-30 180.9 13.7 158 223-380 15-173 (185)
84 3i32_A Heat resistant RNA depe 99.9 2.2E-24 7.4E-29 184.7 18.3 155 228-382 3-157 (300)
85 3b6e_A Interferon-induced heli 99.9 9E-25 3.1E-29 180.9 12.1 168 26-197 29-216 (216)
86 2yjt_D ATP-dependent RNA helic 99.9 2E-26 6.8E-31 182.4 0.0 154 229-382 5-159 (170)
87 3crv_A XPD/RAD3 related DNA he 99.9 2E-21 6.8E-26 182.2 30.5 314 27-362 1-533 (551)
88 2vl7_A XPD; helicase, unknown 99.9 7.1E-23 2.4E-27 191.1 20.5 104 252-361 383-522 (540)
89 1rif_A DAR protein, DNA helica 99.9 3.7E-23 1.3E-27 177.9 12.4 155 30-203 113-267 (282)
90 4a15_A XPD helicase, ATP-depen 99.8 8.1E-20 2.8E-24 172.4 19.2 106 252-361 447-585 (620)
91 2fz4_A DNA repair protein RAD2 99.8 3.7E-20 1.3E-24 154.2 14.8 138 30-201 93-231 (237)
92 3llm_A ATP-dependent RNA helic 99.8 7.5E-20 2.6E-24 152.7 15.1 162 27-202 58-222 (235)
93 1z5z_A Helicase of the SNF2/RA 99.8 1.3E-18 4.4E-23 147.2 12.8 129 235-363 92-227 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 2.2E-08 7.5E-13 94.6 9.8 162 18-197 136-298 (608)
95 4b3f_X DNA-binding protein smu 98.7 6.6E-08 2.2E-12 92.4 9.4 68 30-106 189-257 (646)
96 2gk6_A Regulator of nonsense t 98.6 3.5E-07 1.2E-11 86.9 13.6 70 28-105 178-247 (624)
97 2xzl_A ATP-dependent helicase 98.6 3.3E-07 1.1E-11 89.0 13.3 71 28-106 358-428 (802)
98 3e1s_A Exodeoxyribonuclease V, 98.6 5.8E-07 2E-11 84.1 12.7 126 30-196 189-314 (574)
99 3upu_A ATP-dependent DNA helic 98.5 5.2E-07 1.8E-11 82.5 11.9 71 24-102 19-94 (459)
100 2wjy_A Regulator of nonsense t 98.5 9.6E-07 3.3E-11 85.7 13.5 70 29-106 355-424 (800)
101 3hgt_A HDA1 complex subunit 3; 98.5 1.6E-06 5.6E-11 73.5 12.0 127 235-366 105-243 (328)
102 3lfu_A DNA helicase II; SF1 he 98.3 3.7E-05 1.3E-09 73.8 19.4 82 29-117 8-91 (647)
103 3cpe_A Terminase, DNA packagin 97.9 0.00024 8.3E-09 67.0 14.5 150 30-200 163-315 (592)
104 2o0j_A Terminase, DNA packagin 97.8 0.0002 6.9E-09 63.0 12.0 70 30-106 163-232 (385)
105 3vkw_A Replicase large subunit 97.6 0.00027 9.3E-09 63.0 8.9 107 47-197 163-269 (446)
106 2orw_A Thymidine kinase; TMTK, 97.5 0.00054 1.8E-08 53.9 9.6 39 45-92 3-41 (184)
107 3ec2_A DNA replication protein 97.4 0.00089 3E-08 52.5 9.5 18 45-62 38-55 (180)
108 2b8t_A Thymidine kinase; deoxy 97.4 0.00062 2.1E-08 55.1 8.4 103 45-183 12-114 (223)
109 1xx6_A Thymidine kinase; NESG, 97.4 0.00058 2E-08 53.9 8.1 39 45-92 8-46 (191)
110 3te6_A Regulatory protein SIR3 97.4 0.0018 6E-08 55.5 11.5 26 45-71 45-70 (318)
111 1uaa_A REP helicase, protein ( 97.3 0.00043 1.5E-08 66.6 8.1 82 30-118 2-86 (673)
112 2j9r_A Thymidine kinase; TK1, 97.3 0.00086 2.9E-08 53.5 7.7 39 46-93 29-67 (214)
113 2kjq_A DNAA-related protein; s 97.2 0.00026 9E-09 53.6 4.1 19 44-62 35-53 (149)
114 3e2i_A Thymidine kinase; Zn-bi 97.1 0.0032 1.1E-07 50.1 9.5 40 45-93 28-67 (219)
115 1l8q_A Chromosomal replication 97.1 0.0022 7.4E-08 55.6 9.2 18 45-62 37-54 (324)
116 1a5t_A Delta prime, HOLB; zinc 97.1 0.002 7E-08 56.0 8.9 33 31-63 3-42 (334)
117 1pjr_A PCRA; DNA repair, DNA r 97.0 0.0015 5.1E-08 63.2 8.2 70 29-105 10-79 (724)
118 2chg_A Replication factor C sm 96.9 0.018 6E-07 46.5 12.9 39 156-195 101-139 (226)
119 1d2n_A N-ethylmaleimide-sensit 96.9 0.013 4.3E-07 49.3 12.1 18 46-63 65-82 (272)
120 1w4r_A Thymidine kinase; type 96.9 0.0017 5.7E-08 50.9 6.0 38 45-91 20-57 (195)
121 2orv_A Thymidine kinase; TP4A 96.8 0.0025 8.4E-08 51.4 6.7 40 45-93 19-58 (234)
122 2z4s_A Chromosomal replication 96.8 0.0076 2.6E-07 54.5 10.5 17 46-62 131-147 (440)
123 3h4m_A Proteasome-activating n 96.7 0.015 5E-07 49.3 11.1 54 7-62 13-68 (285)
124 3bos_A Putative DNA replicatio 96.7 0.0066 2.3E-07 49.8 8.4 18 45-62 52-69 (242)
125 3u61_B DNA polymerase accessor 96.6 0.014 4.9E-07 50.4 10.4 37 157-193 105-141 (324)
126 3u4q_A ATP-dependent helicase/ 96.5 0.0041 1.4E-07 63.9 7.0 71 30-105 10-80 (1232)
127 3co5_A Putative two-component 96.4 0.0073 2.5E-07 45.2 6.6 20 43-62 25-44 (143)
128 2qby_B CDC6 homolog 3, cell di 96.4 0.019 6.7E-07 50.8 10.3 24 46-70 46-69 (384)
129 3n70_A Transport activator; si 96.4 0.011 3.6E-07 44.4 7.2 19 44-62 23-41 (145)
130 2w58_A DNAI, primosome compone 96.4 0.017 5.7E-07 46.0 8.8 17 46-62 55-71 (202)
131 2v1u_A Cell division control p 96.4 0.032 1.1E-06 49.4 11.5 18 45-62 44-61 (387)
132 3kl4_A SRP54, signal recogniti 96.3 0.045 1.5E-06 49.0 11.9 129 47-208 99-233 (433)
133 2p65_A Hypothetical protein PF 96.3 0.019 6.6E-07 44.7 8.7 18 45-62 43-60 (187)
134 3eie_A Vacuolar protein sortin 96.3 0.0076 2.6E-07 52.1 6.6 54 6-62 13-68 (322)
135 1sxj_D Activator 1 41 kDa subu 96.3 0.03 1E-06 48.9 10.6 42 156-198 132-173 (353)
136 4b4t_J 26S protease regulatory 96.2 0.049 1.7E-06 48.0 11.5 54 6-62 143-199 (405)
137 3syl_A Protein CBBX; photosynt 96.2 0.011 3.9E-07 50.6 7.2 17 46-62 68-84 (309)
138 2qby_A CDC6 homolog 1, cell di 96.1 0.032 1.1E-06 49.4 10.2 18 45-62 45-62 (386)
139 1jbk_A CLPB protein; beta barr 96.1 0.13 4.4E-06 40.1 12.8 17 46-62 44-60 (195)
140 3cf0_A Transitional endoplasmi 96.1 0.014 4.6E-07 49.9 7.1 19 44-62 48-66 (301)
141 2gno_A DNA polymerase III, gam 96.0 0.043 1.5E-06 46.8 9.9 39 156-195 81-119 (305)
142 1iqp_A RFCS; clamp loader, ext 96.0 0.049 1.7E-06 46.9 10.5 39 156-195 109-147 (327)
143 1g5t_A COB(I)alamin adenosyltr 95.9 0.097 3.3E-06 41.0 10.7 36 45-89 28-63 (196)
144 1fnn_A CDC6P, cell division co 95.9 0.016 5.4E-07 51.5 7.1 16 47-62 46-61 (389)
145 3dm5_A SRP54, signal recogniti 95.9 0.1 3.6E-06 46.7 12.0 55 47-113 102-158 (443)
146 4b4t_K 26S protease regulatory 95.8 0.057 1.9E-06 48.2 10.2 18 45-62 206-223 (428)
147 3pfi_A Holliday junction ATP-d 95.8 0.031 1.1E-06 48.5 8.4 17 46-62 56-72 (338)
148 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.02 7E-07 49.3 6.9 53 6-62 7-62 (322)
149 3pvs_A Replication-associated 95.7 0.014 4.7E-07 52.8 5.7 17 46-62 51-67 (447)
150 2qp9_X Vacuolar protein sortin 95.6 0.13 4.4E-06 45.0 11.6 17 46-62 85-101 (355)
151 2dr3_A UPF0273 protein PH0284; 95.6 0.029 1E-06 46.1 7.1 53 43-105 21-73 (247)
152 2zpa_A Uncharacterized protein 95.6 0.045 1.5E-06 51.6 8.7 114 30-200 175-290 (671)
153 1sxj_E Activator 1 40 kDa subu 95.5 0.052 1.8E-06 47.4 8.8 43 156-199 133-175 (354)
154 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.21 7.1E-06 41.3 11.9 18 45-62 39-56 (262)
155 1njg_A DNA polymerase III subu 95.4 0.22 7.6E-06 40.4 12.0 16 47-62 47-62 (250)
156 2zan_A Vacuolar protein sortin 95.4 0.04 1.4E-06 49.9 7.7 17 46-62 168-184 (444)
157 3vfd_A Spastin; ATPase, microt 95.4 0.06 2E-06 47.8 8.8 18 45-62 148-165 (389)
158 1gm5_A RECG; helicase, replica 95.3 0.047 1.6E-06 52.9 8.4 81 252-332 416-501 (780)
159 1sxj_B Activator 1 37 kDa subu 95.3 0.095 3.3E-06 45.0 9.6 38 157-195 107-144 (323)
160 3hu3_A Transitional endoplasmi 95.3 0.035 1.2E-06 50.8 6.9 43 158-200 298-350 (489)
161 2w0m_A SSO2452; RECA, SSPF, un 95.0 0.25 8.6E-06 39.9 11.0 22 42-63 20-41 (235)
162 1jr3_A DNA polymerase III subu 94.9 0.26 8.8E-06 43.2 11.5 39 155-194 117-155 (373)
163 1sxj_C Activator 1 40 kDa subu 94.9 0.12 4.1E-06 44.9 9.1 39 156-195 109-147 (340)
164 1n0w_A DNA repair protein RAD5 94.9 0.066 2.3E-06 43.8 7.0 22 43-64 22-43 (243)
165 2ehv_A Hypothetical protein PH 94.8 0.037 1.3E-06 45.6 5.4 23 41-63 26-48 (251)
166 1sxj_A Activator 1 95 kDa subu 94.8 0.19 6.7E-06 46.4 10.6 41 156-198 147-189 (516)
167 3cf2_A TER ATPase, transitiona 94.8 0.045 1.5E-06 53.0 6.4 52 8-62 474-528 (806)
168 1hqc_A RUVB; extended AAA-ATPa 94.7 0.074 2.5E-06 45.8 7.3 17 46-62 39-55 (324)
169 1w5s_A Origin recognition comp 94.5 0.7 2.4E-05 41.0 13.3 17 46-62 51-69 (412)
170 4b4t_M 26S protease regulatory 94.2 0.025 8.6E-07 50.6 3.0 56 4-62 174-232 (434)
171 2zr9_A Protein RECA, recombina 94.1 0.2 6.9E-06 43.5 8.6 41 45-94 61-101 (349)
172 2chq_A Replication factor C sm 93.8 0.085 2.9E-06 45.2 5.7 16 47-62 40-55 (319)
173 3cf2_A TER ATPase, transitiona 93.6 0.11 3.8E-06 50.3 6.4 17 46-62 239-255 (806)
174 2ce7_A Cell division protein F 93.3 0.83 2.8E-05 41.5 11.3 17 46-62 50-66 (476)
175 3oiy_A Reverse gyrase helicase 93.2 0.24 8.1E-06 44.3 7.7 79 252-330 63-148 (414)
176 3m6a_A ATP-dependent protease 93.2 0.17 5.9E-06 47.0 6.9 18 45-62 108-125 (543)
177 3cmu_A Protein RECA, recombina 93.2 0.28 9.6E-06 52.3 9.0 42 44-94 1426-1467(2050)
178 2zts_A Putative uncharacterize 92.9 0.12 4.2E-06 42.3 5.1 53 44-105 29-81 (251)
179 2v1x_A ATP-dependent DNA helic 92.8 0.96 3.3E-05 42.5 11.4 124 252-375 83-225 (591)
180 2hjv_A ATP-dependent RNA helic 92.7 2.1 7.1E-05 32.3 11.5 75 81-166 34-112 (163)
181 3b85_A Phosphate starvation-in 92.5 0.15 5.3E-06 40.6 4.9 34 28-61 5-38 (208)
182 2i1q_A DNA repair and recombin 92.3 0.28 9.7E-06 42.1 6.7 62 45-106 98-167 (322)
183 4b4t_H 26S protease regulatory 92.3 0.081 2.8E-06 47.4 3.2 54 4-62 202-260 (467)
184 3ber_A Probable ATP-dependent 92.2 1 3.5E-05 36.9 9.7 75 252-330 110-195 (249)
185 2qgz_A Helicase loader, putati 92.1 0.29 9.9E-06 41.7 6.5 26 45-71 152-177 (308)
186 1p9r_A General secretion pathw 92.0 0.24 8.4E-06 44.1 6.0 30 32-61 152-183 (418)
187 4b4t_L 26S protease subunit RP 91.8 0.082 2.8E-06 47.3 2.7 55 5-62 175-232 (437)
188 2l8b_A Protein TRAI, DNA helic 91.7 0.56 1.9E-05 36.0 6.8 121 32-197 36-158 (189)
189 1oyw_A RECQ helicase, ATP-depe 91.6 1.6 5.4E-05 40.3 11.3 123 253-375 65-199 (523)
190 2eyq_A TRCF, transcription-rep 91.6 0.66 2.2E-05 47.3 9.3 80 251-330 650-734 (1151)
191 1t6n_A Probable ATP-dependent 91.6 0.52 1.8E-05 37.7 7.2 76 253-331 82-168 (220)
192 1u0j_A DNA replication protein 91.6 0.27 9.2E-06 40.6 5.4 46 16-63 72-122 (267)
193 3fe2_A Probable ATP-dependent 91.6 0.86 2.9E-05 37.1 8.6 74 253-330 102-185 (242)
194 1tue_A Replication protein E1; 91.4 0.26 8.7E-06 38.9 4.8 47 14-62 25-75 (212)
195 3pxi_A Negative regulator of g 91.4 0.15 5E-06 49.7 4.2 17 47-63 523-539 (758)
196 3eaq_A Heat resistant RNA depe 91.3 3.2 0.00011 32.9 11.5 72 81-163 30-105 (212)
197 1ls1_A Signal recognition part 91.1 1.8 6E-05 36.6 10.2 19 45-63 98-116 (295)
198 1v5w_A DMC1, meiotic recombina 91.1 0.46 1.6E-05 41.2 6.7 58 45-105 122-180 (343)
199 3hws_A ATP-dependent CLP prote 90.8 0.42 1.4E-05 41.8 6.3 18 45-62 51-68 (363)
200 3hjh_A Transcription-repair-co 90.7 0.55 1.9E-05 42.7 7.0 74 243-329 373-446 (483)
201 4b4t_I 26S protease regulatory 90.6 0.12 3.9E-06 46.0 2.4 55 5-62 176-233 (437)
202 1fuk_A Eukaryotic initiation f 90.5 2 7E-05 32.4 9.2 75 81-166 29-107 (165)
203 2rb4_A ATP-dependent RNA helic 90.3 2.8 9.5E-05 32.0 10.0 74 81-165 33-110 (175)
204 1e9r_A Conjugal transfer prote 89.9 0.43 1.5E-05 43.0 5.7 43 45-96 53-95 (437)
205 2p6n_A ATP-dependent RNA helic 89.9 1.9 6.5E-05 33.6 8.8 73 82-165 54-130 (191)
206 3bh0_A DNAB-like replicative h 89.5 0.81 2.8E-05 39.1 6.8 54 42-105 65-118 (315)
207 3io5_A Recombination and repai 89.5 0.32 1.1E-05 41.3 4.1 50 47-106 30-79 (333)
208 3hr8_A Protein RECA; alpha and 89.3 0.29 9.9E-06 42.5 3.8 42 45-95 61-102 (356)
209 2gxq_A Heat resistant RNA depe 89.3 1.7 5.7E-05 34.2 8.2 76 252-331 71-154 (207)
210 4ddu_A Reverse gyrase; topoiso 89.2 0.77 2.6E-05 46.6 7.3 79 252-330 120-205 (1104)
211 2eyu_A Twitching motility prot 88.9 0.26 8.9E-06 40.9 3.2 20 42-61 22-41 (261)
212 1t5i_A C_terminal domain of A 88.9 6.3 0.00021 29.9 12.9 75 81-166 30-108 (172)
213 2oap_1 GSPE-2, type II secreti 88.7 0.55 1.9E-05 43.1 5.5 37 23-61 239-276 (511)
214 2px0_A Flagellar biosynthesis 88.7 0.5 1.7E-05 40.0 4.8 19 45-63 105-123 (296)
215 2q6t_A DNAB replication FORK h 88.6 0.56 1.9E-05 42.3 5.4 51 44-103 199-249 (444)
216 2r44_A Uncharacterized protein 88.5 0.3 1E-05 42.1 3.4 23 40-62 41-63 (331)
217 2r6a_A DNAB helicase, replicat 88.4 0.65 2.2E-05 42.1 5.7 52 42-102 200-251 (454)
218 1ofh_A ATP-dependent HSL prote 88.1 0.76 2.6E-05 38.9 5.8 18 45-62 50-67 (310)
219 3nbx_X ATPase RAVA; AAA+ ATPas 87.6 0.31 1.1E-05 44.6 3.0 27 36-62 32-58 (500)
220 1um8_A ATP-dependent CLP prote 87.5 1.3 4.6E-05 38.8 7.1 18 45-62 72-89 (376)
221 3bgw_A DNAB-like replicative h 87.5 0.85 2.9E-05 41.1 5.8 53 42-104 194-246 (444)
222 2oxc_A Probable ATP-dependent 87.3 0.75 2.6E-05 37.1 5.0 73 253-330 92-175 (230)
223 2qor_A Guanylate kinase; phosp 87.2 0.36 1.2E-05 38.3 2.9 22 41-62 8-29 (204)
224 1cr0_A DNA primase/helicase; R 87.2 0.58 2E-05 39.5 4.4 22 42-63 32-53 (296)
225 4a1f_A DNAB helicase, replicat 87.2 0.92 3.1E-05 39.1 5.6 56 39-104 40-95 (338)
226 3t15_A Ribulose bisphosphate c 87.2 0.38 1.3E-05 40.7 3.2 17 46-62 37-53 (293)
227 2r8r_A Sensor protein; KDPD, P 87.2 0.77 2.6E-05 36.8 4.8 21 47-67 8-28 (228)
228 3vaa_A Shikimate kinase, SK; s 86.9 0.4 1.4E-05 37.8 3.1 19 44-62 24-42 (199)
229 2pl3_A Probable ATP-dependent 86.8 1.5 5.3E-05 35.3 6.7 74 252-330 96-180 (236)
230 1lvg_A Guanylate kinase, GMP k 86.8 0.42 1.4E-05 37.7 3.1 18 44-61 3-20 (198)
231 3jvv_A Twitching mobility prot 86.7 0.77 2.6E-05 39.9 4.9 17 45-61 123-139 (356)
232 2x8a_A Nuclear valosin-contain 86.6 0.19 6.5E-06 42.1 1.0 53 7-62 6-61 (274)
233 2bjv_A PSP operon transcriptio 86.5 0.47 1.6E-05 39.3 3.4 19 44-62 28-46 (265)
234 2cvh_A DNA repair and recombin 86.5 0.52 1.8E-05 37.6 3.6 22 43-64 18-39 (220)
235 3u4q_B ATP-dependent helicase/ 86.4 0.58 2E-05 48.0 4.6 31 255-285 344-375 (1166)
236 4ag6_A VIRB4 ATPase, type IV s 86.4 0.82 2.8E-05 40.5 5.1 41 44-93 34-74 (392)
237 1u94_A RECA protein, recombina 86.3 0.56 1.9E-05 40.8 3.8 42 44-94 62-103 (356)
238 1kgd_A CASK, peripheral plasma 86.3 0.46 1.6E-05 36.7 3.1 18 44-61 4-21 (180)
239 3b9p_A CG5977-PA, isoform A; A 86.3 0.4 1.4E-05 40.5 2.9 18 45-62 54-71 (297)
240 2gza_A Type IV secretion syste 86.2 0.51 1.7E-05 41.2 3.6 20 42-61 172-191 (361)
241 3iij_A Coilin-interacting nucl 86.1 0.42 1.4E-05 36.9 2.7 21 43-63 9-29 (180)
242 2z43_A DNA repair and recombin 86.0 0.62 2.1E-05 40.0 4.0 58 45-105 107-165 (324)
243 2qmh_A HPR kinase/phosphorylas 85.8 0.4 1.4E-05 37.6 2.4 19 45-63 34-52 (205)
244 1nlf_A Regulatory protein REPA 85.8 1.2 4.1E-05 37.2 5.6 66 39-106 24-91 (279)
245 3tr0_A Guanylate kinase, GMP k 85.7 0.47 1.6E-05 37.4 2.9 19 43-61 5-23 (205)
246 3tau_A Guanylate kinase, GMP k 85.7 0.51 1.7E-05 37.5 3.1 19 44-62 7-25 (208)
247 3iuy_A Probable ATP-dependent 85.7 2.2 7.4E-05 34.2 7.0 75 252-330 93-176 (228)
248 1zp6_A Hypothetical protein AT 85.6 0.34 1.2E-05 37.7 2.0 19 43-61 7-25 (191)
249 1wrb_A DJVLGB; RNA helicase, D 85.6 6.5 0.00022 32.0 10.0 75 253-331 100-184 (253)
250 1vec_A ATP-dependent RNA helic 85.6 4.4 0.00015 31.7 8.6 75 253-331 71-156 (206)
251 3trf_A Shikimate kinase, SK; a 85.3 0.53 1.8E-05 36.4 3.0 19 45-63 5-23 (185)
252 1yks_A Genome polyprotein [con 85.3 2.8 9.4E-05 37.7 8.1 69 82-162 177-245 (440)
253 3lw7_A Adenylate kinase relate 85.3 0.38 1.3E-05 36.7 2.2 16 47-62 3-18 (179)
254 1lv7_A FTSH; alpha/beta domain 85.3 0.5 1.7E-05 38.9 3.0 18 45-62 45-62 (257)
255 3cmw_A Protein RECA, recombina 85.2 3 0.0001 44.0 9.0 52 45-108 1431-1482(1706)
256 1qhx_A CPT, protein (chloramph 85.2 0.41 1.4E-05 36.8 2.2 18 45-62 3-20 (178)
257 3i32_A Heat resistant RNA depe 85.1 5.5 0.00019 33.6 9.3 75 81-166 27-105 (300)
258 2j41_A Guanylate kinase; GMP, 85.0 0.53 1.8E-05 37.2 2.9 20 43-62 4-23 (207)
259 3uk6_A RUVB-like 2; hexameric 85.0 0.49 1.7E-05 41.4 2.9 17 46-62 71-87 (368)
260 3exa_A TRNA delta(2)-isopenten 84.7 0.49 1.7E-05 40.1 2.6 18 46-63 4-21 (322)
261 1kag_A SKI, shikimate kinase I 84.6 0.71 2.4E-05 35.2 3.4 18 45-62 4-21 (173)
262 3a8t_A Adenylate isopentenyltr 84.5 0.56 1.9E-05 40.3 2.9 18 46-63 41-58 (339)
263 2ius_A DNA translocase FTSK; n 84.4 0.93 3.2E-05 41.5 4.5 21 43-63 165-185 (512)
264 2jgn_A DBX, DDX3, ATP-dependen 84.3 1.9 6.6E-05 33.3 5.8 73 81-164 45-121 (185)
265 1xjc_A MOBB protein homolog; s 84.3 1.5 5.1E-05 33.4 4.9 16 47-62 6-21 (169)
266 2c9o_A RUVB-like 1; hexameric 84.1 0.63 2.2E-05 42.2 3.3 18 46-63 64-81 (456)
267 1ixz_A ATP-dependent metallopr 84.1 0.42 1.4E-05 39.3 2.0 55 5-62 10-66 (254)
268 3bor_A Human initiation factor 83.9 2 6.9E-05 34.7 6.0 76 253-331 98-183 (237)
269 1xp8_A RECA protein, recombina 83.9 1.1 3.6E-05 39.2 4.5 41 45-94 74-114 (366)
270 1qde_A EIF4A, translation init 83.9 1.1 3.7E-05 35.9 4.3 75 252-331 81-165 (224)
271 1c9k_A COBU, adenosylcobinamid 83.8 1.7 5.7E-05 33.5 5.1 45 48-105 2-46 (180)
272 2ze6_A Isopentenyl transferase 83.8 0.62 2.1E-05 38.4 2.8 16 47-62 3-18 (253)
273 4gp7_A Metallophosphoesterase; 83.7 0.36 1.2E-05 37.0 1.3 19 44-62 8-26 (171)
274 2r2a_A Uncharacterized protein 83.6 0.77 2.6E-05 36.2 3.2 16 47-62 7-22 (199)
275 2pt7_A CAG-ALFA; ATPase, prote 83.5 0.58 2E-05 40.3 2.7 20 42-61 168-187 (330)
276 1y63_A LMAJ004144AAA protein; 83.5 0.73 2.5E-05 35.7 3.0 19 44-62 9-27 (184)
277 1kht_A Adenylate kinase; phosp 83.5 0.7 2.4E-05 35.9 3.0 18 45-62 3-20 (192)
278 1s96_A Guanylate kinase, GMP k 83.5 0.73 2.5E-05 37.0 3.1 21 41-61 12-32 (219)
279 1w36_B RECB, exodeoxyribonucle 83.4 1.8 6.1E-05 44.4 6.6 60 46-105 17-79 (1180)
280 1z6g_A Guanylate kinase; struc 83.4 0.83 2.8E-05 36.6 3.4 20 42-61 20-39 (218)
281 3a00_A Guanylate kinase, GMP k 83.3 0.81 2.8E-05 35.5 3.2 16 46-61 2-17 (186)
282 3cm0_A Adenylate kinase; ATP-b 83.3 0.51 1.7E-05 36.6 2.0 18 45-62 4-21 (186)
283 1ly1_A Polynucleotide kinase; 83.2 0.71 2.4E-05 35.4 2.8 16 47-62 4-19 (181)
284 3kb2_A SPBC2 prophage-derived 83.0 0.72 2.5E-05 35.1 2.8 16 47-62 3-18 (173)
285 1in4_A RUVB, holliday junction 82.9 0.74 2.5E-05 39.7 3.1 17 46-62 52-68 (334)
286 2r62_A Cell division protease 82.8 0.4 1.4E-05 39.8 1.3 18 45-62 44-61 (268)
287 3foz_A TRNA delta(2)-isopenten 82.7 0.84 2.9E-05 38.6 3.2 17 47-63 12-28 (316)
288 3ney_A 55 kDa erythrocyte memb 82.6 0.81 2.8E-05 36.0 2.9 18 44-61 18-35 (197)
289 1xti_A Probable ATP-dependent 82.5 5.5 0.00019 34.8 8.8 75 253-330 76-161 (391)
290 1iy2_A ATP-dependent metallopr 82.5 0.61 2.1E-05 39.0 2.3 54 6-62 35-90 (278)
291 2yvu_A Probable adenylyl-sulfa 82.4 1.6 5.4E-05 33.7 4.6 18 45-62 13-30 (186)
292 1zuh_A Shikimate kinase; alpha 82.0 0.84 2.9E-05 34.6 2.8 18 46-63 8-25 (168)
293 3d8b_A Fidgetin-like protein 1 81.9 0.9 3.1E-05 39.6 3.3 18 45-62 117-134 (357)
294 1znw_A Guanylate kinase, GMP k 81.9 0.92 3.1E-05 35.9 3.1 21 41-61 16-36 (207)
295 1ojl_A Transcriptional regulat 81.9 0.9 3.1E-05 38.6 3.2 18 45-62 25-42 (304)
296 2ewv_A Twitching motility prot 81.8 0.63 2.2E-05 40.8 2.3 19 43-61 134-152 (372)
297 4fcw_A Chaperone protein CLPB; 81.5 0.75 2.6E-05 39.0 2.6 18 46-63 48-65 (311)
298 4eun_A Thermoresistant glucoki 81.5 0.97 3.3E-05 35.5 3.1 19 44-62 28-46 (200)
299 3i5x_A ATP-dependent RNA helic 81.3 14 0.00048 34.2 11.4 78 81-166 338-419 (563)
300 1vma_A Cell division protein F 81.2 1.7 5.8E-05 36.9 4.6 17 47-63 106-122 (306)
301 2c95_A Adenylate kinase 1; tra 81.2 1 3.4E-05 35.1 3.1 20 43-62 7-26 (196)
302 4anj_A Unconventional myosin-V 81.1 1.8 6E-05 43.4 5.3 65 6-71 96-169 (1052)
303 1q57_A DNA primase/helicase; d 81.1 0.95 3.2E-05 41.6 3.3 53 42-103 239-291 (503)
304 3umf_A Adenylate kinase; rossm 80.8 1 3.5E-05 36.0 3.0 20 44-63 28-47 (217)
305 3sr0_A Adenylate kinase; phosp 80.7 1.2 4.2E-05 35.2 3.4 16 48-63 3-18 (206)
306 1knq_A Gluconate kinase; ALFA/ 80.7 0.87 3E-05 34.8 2.5 18 45-62 8-25 (175)
307 4db1_A Myosin-7; S1DC, cardiac 80.7 1.7 5.7E-05 42.0 4.8 64 6-70 124-195 (783)
308 3crm_A TRNA delta(2)-isopenten 80.6 0.95 3.3E-05 38.6 2.9 17 47-63 7-23 (323)
309 2v54_A DTMP kinase, thymidylat 80.4 0.92 3.2E-05 35.6 2.6 19 44-62 3-21 (204)
310 1lkx_A Myosin IE heavy chain; 80.2 1.6 5.5E-05 41.5 4.5 64 7-71 48-119 (697)
311 1w7j_A Myosin VA; motor protei 80.2 1.7 6E-05 42.0 4.8 64 7-71 110-181 (795)
312 2iut_A DNA translocase FTSK; n 79.9 1.7 5.8E-05 40.2 4.4 27 44-71 213-239 (574)
313 3b9q_A Chloroplast SRP recepto 79.9 2.1 7.1E-05 36.2 4.8 18 45-62 100-117 (302)
314 1w9i_A Myosin II heavy chain; 79.9 1.8 6.3E-05 41.6 4.8 58 7-64 126-191 (770)
315 2d7d_A Uvrabc system protein B 79.9 22 0.00074 33.8 12.2 77 81-168 444-524 (661)
316 1g8x_A Myosin II heavy chain f 79.9 2.3 7.9E-05 42.5 5.7 59 6-64 125-191 (1010)
317 3vkg_A Dynein heavy chain, cyt 79.9 2.2 7.5E-05 47.9 5.9 46 17-63 875-924 (3245)
318 3bs4_A Uncharacterized protein 79.8 2.6 8.9E-05 34.7 5.1 53 45-107 21-73 (260)
319 4akg_A Glutathione S-transfera 79.7 2.3 8E-05 47.1 6.1 46 17-63 892-941 (2695)
320 3sqw_A ATP-dependent RNA helic 79.7 17 0.00059 33.8 11.4 79 81-167 287-369 (579)
321 3nwj_A ATSK2; P loop, shikimat 79.7 1.5 5.2E-05 35.9 3.7 18 45-62 48-65 (250)
322 2ffh_A Protein (FFH); SRP54, s 79.6 33 0.0011 30.5 13.3 17 47-63 100-116 (425)
323 2rhm_A Putative kinase; P-loop 79.5 1.1 3.8E-05 34.8 2.8 18 45-62 5-22 (193)
324 2bdt_A BH3686; alpha-beta prot 79.4 1.2 4E-05 34.6 2.9 16 47-62 4-19 (189)
325 2bwj_A Adenylate kinase 5; pho 79.3 1.4 4.9E-05 34.3 3.4 20 43-62 10-29 (199)
326 2l82_A Designed protein OR32; 79.2 9.7 0.00033 25.8 6.8 112 256-373 5-126 (162)
327 3d3q_A TRNA delta(2)-isopenten 79.2 1.3 4.4E-05 38.1 3.2 17 47-63 9-25 (340)
328 2plr_A DTMP kinase, probable t 79.2 0.97 3.3E-05 35.7 2.4 18 45-62 4-21 (213)
329 1rj9_A FTSY, signal recognitio 79.1 2.3 7.8E-05 36.0 4.8 18 45-62 102-119 (304)
330 3t61_A Gluconokinase; PSI-biol 79.1 1.2 4.1E-05 35.0 2.9 17 46-62 19-35 (202)
331 4f4c_A Multidrug resistance pr 79.0 0.41 1.4E-05 49.6 0.1 35 155-189 570-604 (1321)
332 1via_A Shikimate kinase; struc 79.0 1.4 4.6E-05 33.7 3.1 16 47-62 6-21 (175)
333 3lnc_A Guanylate kinase, GMP k 78.9 0.61 2.1E-05 37.7 1.1 21 42-62 24-44 (231)
334 1zd8_A GTP:AMP phosphotransfer 78.9 1.2 4.2E-05 35.8 2.9 18 45-62 7-24 (227)
335 3fht_A ATP-dependent RNA helic 78.9 21 0.00073 31.1 11.4 74 81-165 265-342 (412)
336 1tev_A UMP-CMP kinase; ploop, 78.8 1 3.6E-05 34.9 2.5 17 46-62 4-20 (196)
337 1g8p_A Magnesium-chelatase 38 78.8 0.85 2.9E-05 39.5 2.1 18 45-62 45-62 (350)
338 1nks_A Adenylate kinase; therm 78.7 1.2 4.1E-05 34.5 2.8 16 47-62 3-18 (194)
339 1zu4_A FTSY; GTPase, signal re 78.7 2.3 7.8E-05 36.4 4.6 18 46-63 106-123 (320)
340 4a74_A DNA repair and recombin 78.7 0.85 2.9E-05 36.6 1.9 21 42-62 22-42 (231)
341 1ye8_A Protein THEP1, hypothet 78.6 1.3 4.4E-05 34.2 2.8 15 47-61 2-16 (178)
342 2jlq_A Serine protease subunit 78.6 7 0.00024 35.2 8.1 69 82-162 188-256 (451)
343 1gvn_B Zeta; postsegregational 78.5 1.2 4E-05 37.5 2.7 17 46-62 34-50 (287)
344 1ex7_A Guanylate kinase; subst 78.5 1.6 5.3E-05 34.0 3.3 16 46-61 2-17 (186)
345 3nwn_A Kinesin-like protein KI 78.4 1.6 5.4E-05 37.9 3.6 24 39-62 97-122 (359)
346 3uie_A Adenylyl-sulfate kinase 78.4 1.2 4E-05 35.1 2.6 19 44-62 24-42 (200)
347 3fb4_A Adenylate kinase; psych 78.3 1.6 5.3E-05 34.7 3.4 17 47-63 2-18 (216)
348 2wv9_A Flavivirin protease NS2 78.3 6.7 0.00023 37.4 8.2 70 81-162 409-478 (673)
349 1kk8_A Myosin heavy chain, str 78.1 1.8 6.3E-05 42.1 4.3 65 6-71 122-194 (837)
350 2i3b_A HCR-ntpase, human cance 78.1 1.6 5.5E-05 34.0 3.3 18 45-62 1-18 (189)
351 2iyv_A Shikimate kinase, SK; t 78.0 1.6 5.5E-05 33.6 3.3 17 46-62 3-19 (184)
352 2v26_A Myosin VI; calmodulin-b 77.9 3.1 0.00011 40.3 5.7 58 7-64 93-159 (784)
353 3dl0_A Adenylate kinase; phosp 77.8 1.4 4.6E-05 35.1 2.9 17 47-63 2-18 (216)
354 1s2m_A Putative ATP-dependent 77.8 23 0.0008 30.8 11.3 73 81-164 257-333 (400)
355 2qt1_A Nicotinamide riboside k 77.7 0.67 2.3E-05 36.7 1.0 23 40-62 16-38 (207)
356 1m7g_A Adenylylsulfate kinase; 77.7 1.6 5.4E-05 34.6 3.2 30 32-62 13-42 (211)
357 2dfs_A Myosin-5A; myosin-V, in 77.6 2.2 7.6E-05 43.0 4.8 64 7-71 110-181 (1080)
358 3c8u_A Fructokinase; YP_612366 77.5 1.2 4.1E-05 35.3 2.5 17 45-61 22-38 (208)
359 3lda_A DNA repair protein RAD5 77.4 4.2 0.00014 35.9 6.1 19 45-63 178-196 (400)
360 1bg2_A Kinesin; motor protein, 77.3 1.8 6.3E-05 36.9 3.6 23 40-62 71-95 (325)
361 1zak_A Adenylate kinase; ATP:A 77.3 1.6 5.3E-05 35.0 3.1 18 46-63 6-23 (222)
362 3tlx_A Adenylate kinase 2; str 77.2 1.4 4.7E-05 36.0 2.8 18 46-63 30-47 (243)
363 1g41_A Heat shock protein HSLU 77.1 1.6 5.3E-05 39.2 3.3 18 45-62 50-67 (444)
364 3e70_C DPA, signal recognition 77.1 2.6 9E-05 36.1 4.6 18 45-62 129-146 (328)
365 2vhj_A Ntpase P4, P4; non- hyd 77.1 1.4 4.7E-05 37.6 2.8 22 44-65 122-143 (331)
366 1aky_A Adenylate kinase; ATP:A 77.1 1.6 5.4E-05 34.9 3.1 17 46-62 5-21 (220)
367 1np6_A Molybdopterin-guanine d 77.0 3.6 0.00012 31.5 4.9 16 46-61 7-22 (174)
368 2xxa_A Signal recognition part 77.0 2.7 9.1E-05 37.7 4.7 35 47-90 102-137 (433)
369 2ycu_A Non muscle myosin 2C, a 76.9 2.4 8E-05 42.4 4.7 65 6-71 99-171 (995)
370 1qf9_A UMP/CMP kinase, protein 76.8 1.5 5.1E-05 34.0 2.8 16 47-62 8-23 (194)
371 2i4i_A ATP-dependent RNA helic 76.8 8.3 0.00028 34.0 8.1 72 81-163 275-350 (417)
372 3k1j_A LON protease, ATP-depen 76.7 2.2 7.6E-05 40.2 4.4 23 40-62 55-77 (604)
373 3pxg_A Negative regulator of g 76.7 1.9 6.4E-05 39.2 3.8 18 45-62 201-218 (468)
374 2jaq_A Deoxyguanosine kinase; 76.6 1.5 5.2E-05 34.3 2.9 16 47-62 2-17 (205)
375 3eph_A TRNA isopentenyltransfe 76.6 1.4 4.8E-05 38.8 2.7 17 47-63 4-20 (409)
376 2og2_A Putative signal recogni 76.5 2.9 0.0001 36.3 4.7 17 46-62 158-174 (359)
377 1e6c_A Shikimate kinase; phosp 76.3 1.8 6.1E-05 32.8 3.1 16 47-62 4-19 (173)
378 3ly5_A ATP-dependent RNA helic 76.3 7.7 0.00026 31.8 7.2 75 252-330 125-210 (262)
379 2v6i_A RNA helicase; membrane, 76.3 4.2 0.00014 36.4 5.9 55 82-140 171-225 (431)
380 2cdn_A Adenylate kinase; phosp 76.2 1.6 5.5E-05 34.2 2.8 17 46-62 21-37 (201)
381 2v3c_C SRP54, signal recogniti 76.2 2.6 8.9E-05 37.7 4.5 18 47-64 101-118 (432)
382 2v9p_A Replication protein E1; 75.8 1.5 5.2E-05 37.1 2.7 18 44-61 125-142 (305)
383 2db3_A ATP-dependent RNA helic 75.8 14 0.00049 32.9 9.4 69 84-163 302-374 (434)
384 3pey_A ATP-dependent RNA helic 75.7 14 0.00047 32.1 9.2 76 81-167 242-321 (395)
385 2j0s_A ATP-dependent RNA helic 75.7 16 0.00053 32.1 9.6 73 81-164 275-351 (410)
386 1goj_A Kinesin, kinesin heavy 75.6 2.1 7E-05 37.2 3.5 22 41-62 75-98 (355)
387 3tif_A Uncharacterized ABC tra 75.6 1.2 4E-05 36.2 1.9 18 44-61 30-47 (235)
388 2vvg_A Kinesin-2; motor protei 75.5 2.2 7.4E-05 36.9 3.6 22 41-62 84-107 (350)
389 2y65_A Kinesin, kinesin heavy 75.4 2.2 7.4E-05 37.2 3.6 23 40-62 78-102 (365)
390 1jjv_A Dephospho-COA kinase; P 75.4 1.7 5.9E-05 34.2 2.9 16 47-62 4-19 (206)
391 3dc4_A Kinesin-like protein NO 75.4 1.9 6.7E-05 37.1 3.3 23 40-62 88-112 (344)
392 2wwf_A Thymidilate kinase, put 75.4 1.6 5.3E-05 34.5 2.6 19 44-62 9-27 (212)
393 1nn5_A Similar to deoxythymidy 75.3 1.7 5.9E-05 34.3 2.9 19 44-62 8-26 (215)
394 1htw_A HI0065; nucleotide-bind 75.2 1.4 4.9E-05 33.1 2.2 19 43-61 31-49 (158)
395 1t5c_A CENP-E protein, centrom 75.2 2.3 7.8E-05 36.8 3.7 23 40-62 71-95 (349)
396 3f9v_A Minichromosome maintena 75.2 1.6 5.4E-05 41.0 2.9 16 47-62 329-344 (595)
397 3b6u_A Kinesin-like protein KI 75.2 2.2 7.5E-05 37.2 3.6 23 40-62 95-119 (372)
398 1e4v_A Adenylate kinase; trans 75.2 1.7 5.9E-05 34.5 2.8 16 47-62 2-17 (214)
399 4a14_A Kinesin, kinesin-like p 75.0 2.3 7.8E-05 36.7 3.6 23 40-62 77-101 (344)
400 1f2t_A RAD50 ABC-ATPase; DNA d 75.0 2.1 7.1E-05 31.8 3.0 15 47-61 25-39 (149)
401 2z83_A Helicase/nucleoside tri 74.9 7.4 0.00025 35.1 7.2 69 82-162 190-258 (459)
402 3lre_A Kinesin-like protein KI 74.9 2.2 7.5E-05 37.0 3.5 22 41-62 100-123 (355)
403 2h58_A Kinesin-like protein KI 74.9 2.3 7.9E-05 36.4 3.6 25 38-62 72-98 (330)
404 1ak2_A Adenylate kinase isoenz 74.8 1.9 6.6E-05 34.7 3.1 18 46-63 17-34 (233)
405 1ukz_A Uridylate kinase; trans 74.8 1.8 6.3E-05 33.9 2.9 16 47-62 17-32 (203)
406 4f4c_A Multidrug resistance pr 74.5 0.32 1.1E-05 50.4 -2.1 40 155-194 1233-1272(1321)
407 1sgw_A Putative ABC transporte 74.5 1.4 4.9E-05 35.1 2.1 19 43-61 33-51 (214)
408 2pt5_A Shikimate kinase, SK; a 74.4 2 6.7E-05 32.4 2.9 16 47-62 2-17 (168)
409 1v8k_A Kinesin-like protein KI 74.4 2.3 8E-05 37.5 3.6 24 39-62 147-172 (410)
410 2xb4_A Adenylate kinase; ATP-b 74.4 1.9 6.5E-05 34.6 2.9 15 48-62 3-17 (223)
411 2pbr_A DTMP kinase, thymidylat 74.2 2 6.7E-05 33.3 2.9 15 48-62 3-17 (195)
412 2z0h_A DTMP kinase, thymidylat 74.1 2 6.7E-05 33.4 2.9 15 48-62 3-17 (197)
413 3gbj_A KIF13B protein; kinesin 74.1 2.4 8.2E-05 36.7 3.6 25 38-62 84-110 (354)
414 2nr8_A Kinesin-like protein KI 74.1 2.4 8.3E-05 36.7 3.6 24 39-62 96-121 (358)
415 3a4m_A L-seryl-tRNA(SEC) kinas 74.0 1.9 6.5E-05 35.5 2.8 17 46-62 5-21 (260)
416 2zfi_A Kinesin-like protein KI 73.9 2.5 8.5E-05 36.8 3.6 23 40-62 83-107 (366)
417 3be4_A Adenylate kinase; malar 73.9 2.1 7.1E-05 34.1 3.0 17 46-62 6-22 (217)
418 1cke_A CK, MSSA, protein (cyti 73.7 2 6.8E-05 34.4 2.8 17 46-62 6-22 (227)
419 2yhs_A FTSY, cell division pro 73.7 3.5 0.00012 37.5 4.6 17 46-62 294-310 (503)
420 1gku_B Reverse gyrase, TOP-RG; 73.7 8.3 0.00028 39.0 7.8 77 252-330 98-184 (1054)
421 3asz_A Uridine kinase; cytidin 73.6 1.8 6.1E-05 34.2 2.5 18 45-62 6-23 (211)
422 2bbw_A Adenylate kinase 4, AK4 73.6 2 6.8E-05 35.0 2.8 18 45-62 27-44 (246)
423 3ice_A Transcription terminati 73.5 3.6 0.00012 36.0 4.5 21 42-62 171-191 (422)
424 2cbz_A Multidrug resistance-as 73.5 1.4 4.8E-05 35.8 1.9 19 43-61 29-47 (237)
425 2vli_A Antibiotic resistance p 73.5 1.6 5.6E-05 33.4 2.2 18 45-62 5-22 (183)
426 2if2_A Dephospho-COA kinase; a 73.4 2 6.9E-05 33.7 2.8 16 47-62 3-18 (204)
427 2pez_A Bifunctional 3'-phospho 73.4 1.9 6.5E-05 33.0 2.5 18 45-62 5-22 (179)
428 1x88_A Kinesin-like protein KI 73.2 2.3 8E-05 36.9 3.3 24 39-62 81-106 (359)
429 1wp9_A ATP-dependent RNA helic 73.2 23 0.00078 31.7 10.2 75 252-331 51-135 (494)
430 1f9v_A Kinesin-like protein KA 73.1 2.7 9.3E-05 36.3 3.6 25 38-62 76-102 (347)
431 1i84_S Smooth muscle myosin he 73.0 2.7 9.2E-05 43.1 4.2 65 6-71 122-194 (1184)
432 3kta_A Chromosome segregation 72.9 2.3 7.9E-05 32.6 3.0 15 47-61 28-42 (182)
433 4etp_A Kinesin-like protein KA 72.9 2.9 0.0001 36.9 3.9 25 38-62 132-158 (403)
434 3t0q_A AGR253WP; kinesin, alph 72.9 2.7 9.1E-05 36.4 3.5 25 38-62 77-103 (349)
435 2j37_W Signal recognition part 72.7 7.3 0.00025 35.6 6.5 35 47-90 103-137 (504)
436 2wbe_C Bipolar kinesin KRP-130 72.7 2.5 8.5E-05 36.9 3.3 22 41-62 95-118 (373)
437 2pcj_A ABC transporter, lipopr 72.5 1.5 5E-05 35.3 1.8 18 44-61 29-46 (224)
438 3bfn_A Kinesin-like protein KI 72.5 2.3 7.9E-05 37.3 3.1 31 32-62 76-116 (388)
439 3tqf_A HPR(Ser) kinase; transf 72.3 2 7E-05 32.8 2.3 19 45-63 16-34 (181)
440 1tf7_A KAIC; homohexamer, hexa 72.3 2.9 0.0001 38.6 3.9 30 42-71 36-65 (525)
441 3qks_A DNA double-strand break 72.2 3.1 0.0001 32.8 3.6 16 46-61 24-39 (203)
442 2heh_A KIF2C protein; kinesin, 72.2 2.6 8.9E-05 36.9 3.3 24 39-62 127-152 (387)
443 1j8m_F SRP54, signal recogniti 72.1 4.5 0.00015 34.1 4.7 17 47-63 100-116 (297)
444 3gfo_A Cobalt import ATP-bindi 72.1 1.5 5.1E-05 36.5 1.7 18 44-61 33-50 (275)
445 1hv8_A Putative ATP-dependent 71.7 26 0.00089 29.9 9.9 74 81-165 237-314 (367)
446 4edh_A DTMP kinase, thymidylat 71.6 4.4 0.00015 32.2 4.3 20 43-62 4-23 (213)
447 2pze_A Cystic fibrosis transme 71.5 1.6 5.6E-05 35.2 1.8 18 44-61 33-50 (229)
448 2ff7_A Alpha-hemolysin translo 71.4 1.6 5.6E-05 35.6 1.8 18 44-61 34-51 (247)
449 3u06_A Protein claret segregat 71.0 3.1 0.00011 36.8 3.6 25 38-62 130-156 (412)
450 1nij_A Hypothetical protein YJ 70.9 3.3 0.00011 35.3 3.7 15 47-61 6-20 (318)
451 3qf7_A RAD50; ABC-ATPase, ATPa 70.9 3.1 0.0001 36.3 3.5 16 47-62 25-40 (365)
452 2p5t_B PEZT; postsegregational 70.9 1.8 6.1E-05 35.5 1.9 17 46-62 33-49 (253)
453 2ghi_A Transport protein; mult 70.8 1.8 6E-05 35.8 1.9 18 44-61 45-62 (260)
454 3cob_A Kinesin heavy chain-lik 70.7 2.7 9.2E-05 36.6 3.1 25 38-62 71-97 (369)
455 4g1u_C Hemin import ATP-bindin 70.7 1.7 5.9E-05 36.0 1.8 18 44-61 36-53 (266)
456 1g6h_A High-affinity branched- 70.7 1.7 5.9E-05 35.8 1.8 18 44-61 32-49 (257)
457 2owm_A Nckin3-434, related to 70.6 3.2 0.00011 37.1 3.6 30 33-62 115-154 (443)
458 1ji0_A ABC transporter; ATP bi 70.6 1.8 6E-05 35.3 1.8 18 44-61 31-48 (240)
459 1b0u_A Histidine permease; ABC 70.2 1.8 6.2E-05 35.7 1.9 18 44-61 31-48 (262)
460 3hjn_A DTMP kinase, thymidylat 70.0 6.4 0.00022 30.7 4.9 23 48-71 3-25 (197)
461 2fna_A Conserved hypothetical 69.9 4.3 0.00015 34.9 4.3 39 158-198 138-179 (357)
462 2zu0_C Probable ATP-dependent 69.8 2.4 8.3E-05 35.1 2.5 18 44-61 45-62 (267)
463 1vpl_A ABC transporter, ATP-bi 69.8 1.9 6.5E-05 35.5 1.9 18 44-61 40-57 (256)
464 2qi9_C Vitamin B12 import ATP- 69.8 1.9 6.3E-05 35.4 1.8 19 43-61 24-42 (249)
465 2d2e_A SUFC protein; ABC-ATPas 69.7 2.4 8.3E-05 34.7 2.5 19 43-61 27-45 (250)
466 1svm_A Large T antigen; AAA+ f 69.6 2.6 9E-05 36.9 2.8 19 44-62 168-186 (377)
467 4a2p_A RIG-I, retinoic acid in 69.6 9.8 0.00034 35.1 7.0 75 253-331 55-140 (556)
468 1uf9_A TT1252 protein; P-loop, 69.5 2.8 9.6E-05 32.7 2.8 16 47-62 10-25 (203)
469 2dhr_A FTSH; AAA+ protein, hex 69.5 2.5 8.6E-05 38.6 2.7 17 46-62 65-81 (499)
470 4e22_A Cytidylate kinase; P-lo 69.4 3 0.0001 34.2 3.0 19 44-62 26-44 (252)
471 1tf7_A KAIC; homohexamer, hexa 69.3 4 0.00014 37.6 4.1 51 42-102 278-328 (525)
472 2olj_A Amino acid ABC transpor 69.2 2 6.8E-05 35.5 1.9 18 44-61 49-66 (263)
473 1mv5_A LMRA, multidrug resista 69.1 1.6 5.6E-05 35.5 1.3 18 44-61 27-44 (243)
474 3fmo_B ATP-dependent RNA helic 69.1 4.2 0.00014 34.3 3.9 71 253-330 162-244 (300)
475 2yz2_A Putative ABC transporte 68.9 2 6.9E-05 35.6 1.9 18 44-61 32-49 (266)
476 4akg_A Glutathione S-transfera 68.9 2.1 7.2E-05 47.4 2.4 20 43-62 1265-1284(2695)
477 2rep_A Kinesin-like protein KI 68.6 3.7 0.00013 35.8 3.5 23 40-62 109-133 (376)
478 2nq2_C Hypothetical ABC transp 68.6 2 6.8E-05 35.3 1.7 18 44-61 30-47 (253)
479 2grj_A Dephospho-COA kinase; T 68.5 3.2 0.00011 32.3 2.9 17 47-63 14-30 (192)
480 2ihy_A ABC transporter, ATP-bi 68.5 2 7E-05 35.8 1.8 18 44-61 46-63 (279)
481 2ixe_A Antigen peptide transpo 68.3 2.1 7.2E-05 35.5 1.9 32 155-186 172-203 (271)
482 3cmw_A Protein RECA, recombina 68.2 4.6 0.00016 42.7 4.6 42 43-93 32-73 (1706)
483 2f1r_A Molybdopterin-guanine d 67.9 1.9 6.7E-05 32.9 1.4 16 47-62 4-19 (171)
484 1ypw_A Transitional endoplasmi 67.7 1.4 4.7E-05 43.1 0.7 19 44-62 510-528 (806)
485 1c4o_A DNA nucleotide excision 67.5 86 0.003 29.8 14.9 77 81-168 438-518 (664)
486 1rz3_A Hypothetical protein rb 67.4 3.3 0.00011 32.4 2.8 17 46-62 23-39 (201)
487 3p32_A Probable GTPase RV1496/ 67.4 5.8 0.0002 34.4 4.6 17 47-63 81-97 (355)
488 3pxi_A Negative regulator of g 67.2 2.9 0.0001 40.6 2.9 18 45-62 201-218 (758)
489 2qen_A Walker-type ATPase; unk 66.9 5.4 0.00018 34.2 4.3 30 32-61 17-47 (350)
490 3nh6_A ATP-binding cassette SU 66.9 1.9 6.6E-05 36.5 1.4 18 44-61 79-96 (306)
491 3zq6_A Putative arsenical pump 66.8 6.9 0.00024 33.4 4.9 36 47-91 16-51 (324)
492 3l0o_A Transcription terminati 66.7 6.3 0.00021 34.6 4.4 21 42-62 172-192 (427)
493 4tmk_A Protein (thymidylate ki 66.7 8.7 0.0003 30.5 5.1 19 44-62 2-20 (213)
494 1vht_A Dephospho-COA kinase; s 66.7 3.5 0.00012 32.7 2.9 16 47-62 6-21 (218)
495 3auy_A DNA double-strand break 66.5 4.2 0.00014 35.6 3.5 16 46-61 26-41 (371)
496 1qvr_A CLPB protein; coiled co 66.3 6.8 0.00023 38.6 5.3 18 45-62 191-208 (854)
497 1q0u_A Bstdead; DEAD protein, 66.2 4.6 0.00016 32.0 3.5 74 253-330 72-159 (219)
498 2jeo_A Uridine-cytidine kinase 66.0 3 0.0001 33.9 2.4 18 45-62 25-42 (245)
499 1ltq_A Polynucleotide kinase; 65.9 3.5 0.00012 34.7 2.8 16 47-62 4-19 (301)
500 1gtv_A TMK, thymidylate kinase 65.7 1.9 6.7E-05 34.0 1.1 15 48-62 3-17 (214)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.5e-58 Score=421.15 Aligned_cols=373 Identities=35% Similarity=0.517 Sum_probs=329.7
Q ss_pred cccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCce
Q 016375 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (390)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (390)
.++.+|+++++++.+.+.|+.+||..|+|+|.++++.+.+++++++.+|||+|||+++++|++..+.+.... ....+++
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~~ 131 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRPQ 131 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCCS
T ss_pred CCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCcc
Confidence 457899999999999999999999999999999999999999999999999999999999999888764321 1224678
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEe
Q 016375 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (390)
Q Consensus 85 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiD 164 (390)
+||++|+++|+.|+.+.+++++...++.+..+.|+............+++|+|+||+.|.+.+.+.. ..+.+++++|+|
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~~~~lVlD 210 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF-ITFEDTRFVVLD 210 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS-CCCTTCCEEEEE
T ss_pred EEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC-cccccCCeEEEc
Confidence 9999999999999999999998888888899999998887777777889999999999999887754 568899999999
Q ss_pred hhhhhcccccHHHHHHHHHhC--CCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchh
Q 016375 165 EADRLLNDDFEKSLDEILNVI--PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC 242 (390)
Q Consensus 165 E~H~~~~~~~~~~~~~~~~~~--~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (390)
|+|++.+.+|...+..++..+ +...|++++|||+++.+..+...++.++..+...........+.+.+..+....+..
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 290 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRS 290 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHH
T ss_pred cHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHH
Confidence 999999999999999998875 567899999999999999999998888887776665555556666777777777777
Q ss_pred HHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC
Q 016375 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (390)
Q Consensus 243 ~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~ 322 (390)
.+..++..... ++||||++++.++.+++.|.+.+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++
T Consensus 291 ~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v 369 (434)
T 2db3_A 291 KLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNI 369 (434)
T ss_dssp HHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTC
T ss_pred HHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccC
Confidence 88888777554 49999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCcchhhhccccccCCCCcceEEEEecc-ccHHHHHHHHHHhCCcceeec
Q 016375 323 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQ-YELEWYLQIEKLIGMLYILFS 380 (390)
Q Consensus 323 ~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~ 380 (390)
++||+++.|.+...|.||+||+||.|++|.+++|+++ .+......+.+.++...+.+|
T Consensus 370 ~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp 428 (434)
T 2db3_A 370 KHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVP 428 (434)
T ss_dssp CEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCC
T ss_pred CEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999994 566777778777765555554
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.1e-57 Score=416.38 Aligned_cols=372 Identities=32% Similarity=0.548 Sum_probs=330.9
Q ss_pred ccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceE
Q 016375 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (390)
...+|+++++++++.+.++.+|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+.++
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------~~~~~~ 108 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQA 108 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT------SCSCCE
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc------cCCceE
Confidence 35689999999999999999999999999999999999999999999999999999998888765321 246789
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEeh
Q 016375 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (390)
Q Consensus 86 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE 165 (390)
||++|+++|+.||.+.++.++...++.+....|+.............++|+|+||+.+.+.+.+.. +.+..+++||+||
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~-~~~~~~~~vViDE 187 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS-LRTRAIKMLVLDE 187 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEET
T ss_pred EEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC-ccHhheeEEEEcc
Confidence 999999999999999999999888899999999988777666666678999999999999887753 5678899999999
Q ss_pred hhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCc-chhHH
Q 016375 166 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY-KDCYL 244 (390)
Q Consensus 166 ~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 244 (390)
+|++.+.++...+..+...++...+++++|||+++........++..+..+.............+.+....... +...+
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 267 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL 267 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHH
Confidence 99999989999999999999888999999999999887777777777777665554444555555555555443 66777
Q ss_pred HHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCE
Q 016375 245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM 324 (390)
Q Consensus 245 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~ 324 (390)
..++......++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++
T Consensus 268 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 268 CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347 (410)
T ss_dssp HHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEE
T ss_pred HHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCE
Confidence 77888778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeeccccc
Q 016375 325 VINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIEAT 384 (390)
Q Consensus 325 vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
||+++.|++...|.||+||+||.|++|.|++|+++.+...+..++++++..++++|.+..
T Consensus 348 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (410)
T 2j0s_A 348 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVA 407 (410)
T ss_dssp EEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCT
T ss_pred EEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchh
Confidence 999999999999999999999999999999999999999999999999999999987654
No 3
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.1e-56 Score=406.62 Aligned_cols=371 Identities=32% Similarity=0.572 Sum_probs=327.7
Q ss_pred ccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceE
Q 016375 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (390)
...+|+++++++++.+.|..+||..|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+.++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~------~~~~~~ 92 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK------LNKIQA 92 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT------SCSCCE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc------cCCccE
Confidence 35689999999999999999999999999999999999999999999999999999998888765321 145679
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEeh
Q 016375 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (390)
Q Consensus 86 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE 165 (390)
||++|+++|+.|+.+.++.+....++.+....|+.............++|+|+||+.+.+.+.+.. ..+.++++||+||
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDE 171 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV-ADLSDCSLFIMDE 171 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEES
T ss_pred EEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC-cccccCCEEEEeC
Confidence 999999999999999999998888889999999988777766677789999999999998877643 5578899999999
Q ss_pred hhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHH
Q 016375 166 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLV 245 (390)
Q Consensus 166 ~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (390)
+|++.+..+...+..+...++...+++++|||++..........+..+..+..... .........+.......+...+.
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~ 250 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLN 250 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHH
Confidence 99999888888899999988888999999999999888888888777766544433 23334455566666667777788
Q ss_pred HHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEE
Q 016375 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV 325 (390)
Q Consensus 246 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~v 325 (390)
.++.....+++||||++++.++.+++.|.+.+..+..+|++++..+|..+++.|++|+.+|||+|+++++|+|+|++++|
T Consensus 251 ~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~V 330 (400)
T 1s2m_A 251 TLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV 330 (400)
T ss_dssp HHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEE
T ss_pred HHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEE
Confidence 88888788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeeccccc
Q 016375 326 INYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIEAT 384 (390)
Q Consensus 326 i~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
|+++.|+++..|.|++||+||.|++|.|++++++.+...+..+++.++.+++.+|....
T Consensus 331 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 389 (400)
T 1s2m_A 331 INFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATID 389 (400)
T ss_dssp EESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCC
T ss_pred EEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999988885443
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-56 Score=409.59 Aligned_cols=375 Identities=35% Similarity=0.537 Sum_probs=323.7
Q ss_pred ccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhc-------
Q 016375 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAEN------- 76 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~------- 76 (390)
+.++.+|+++++++.+.+.|+.+|+..|+|+|.++++.+.+++++++.+|||+|||+++++|++..+......
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 3567889999999999999999999999999999999999999999999999999999999999887754311
Q ss_pred -----CCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCC
Q 016375 77 -----QRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTK 151 (390)
Q Consensus 77 -----~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~ 151 (390)
.....++++||++|+++|+.|+++.++++....++.+..+.|+.............++|+|+||+.|.+.+....
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 170 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK 170 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS
T ss_pred cccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC
Confidence 011234679999999999999999999998888899999999988877777777789999999999999887754
Q ss_pred CccCCCccEEEEehhhhhcccccHHHHHHHHHh--CCC--CccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccc
Q 016375 152 GFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV--IPR--MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDT 227 (390)
Q Consensus 152 ~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~--~~~--~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (390)
+.+..+++||+||+|++.+.++...+..+... ++. ..+++++|||+++........++..+..+...........
T Consensus 171 -~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2i4i_A 171 -IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN 249 (417)
T ss_dssp -BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSS
T ss_pred -cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccC
Confidence 56788999999999999988899889888874 332 4689999999999888888888888877766555555555
Q ss_pred cceeEEecCCCcchhHHHHHHHhh-CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccE
Q 016375 228 LKQQYRFVPAKYKDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 306 (390)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 306 (390)
+...+...+...+...+..++... .+.++||||++++.++.+++.|.+.+..+..+||+++..+|.++++.|++|+.+|
T Consensus 250 i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 329 (417)
T 2i4i_A 250 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 329 (417)
T ss_dssp EEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCE
T ss_pred ceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCE
Confidence 666677777777777777887766 5788999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceee
Q 016375 307 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILF 379 (390)
Q Consensus 307 lv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
||+|+++++|+|+|++++||+++.|++...|.||+||+||.|++|.|++|+++.+...+..+.+.++.....+
T Consensus 330 lvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 402 (417)
T 2i4i_A 330 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV 402 (417)
T ss_dssp EEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred EEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999988886544433
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.9e-56 Score=407.80 Aligned_cols=373 Identities=32% Similarity=0.523 Sum_probs=315.3
Q ss_pred ccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceE
Q 016375 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (390)
...+|+++++++.+.+.|+.+|+..|+++|.++++.+.+++++++.+|||+|||+++++++++.+... ..+.++
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------~~~~~~ 111 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------LKATQA 111 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT------SCSCCE
T ss_pred hhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc------CCceeE
Confidence 35788999999999999999999999999999999999999999999999999999998888766432 146679
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcC-CCCCEEEeCCchhHHHhhcCCCccCCCccEEEEe
Q 016375 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (390)
Q Consensus 86 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiD 164 (390)
||++|+++|+.|+.+.++.++...+..+....++........... ..++|+|+|++.|.+.+.+.. +.+..+++||+|
T Consensus 112 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~~~~vViD 190 (414)
T 3eiq_A 112 LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY-LSPKYIKMFVLD 190 (414)
T ss_dssp EEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS-SCSTTCCEEEEC
T ss_pred EEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cccccCcEEEEE
Confidence 999999999999999999998877888888888887766655554 678999999999999887743 567889999999
Q ss_pred hhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCC-CcchhH
Q 016375 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCY 243 (390)
Q Consensus 165 E~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 243 (390)
|+|++.+..+...+..++..++...+++++|||+++........++..+..+...............+..... ..+...
T Consensus 191 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (414)
T 3eiq_A 191 EADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT 270 (414)
T ss_dssp SHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHH
T ss_pred CHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHH
Confidence 9999988889999999999999999999999999999888888888888877766665555556665555544 346677
Q ss_pred HHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCC
Q 016375 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD 323 (390)
Q Consensus 244 ~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~ 323 (390)
+..++......++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|+++
T Consensus 271 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 350 (414)
T 3eiq_A 271 LCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVS 350 (414)
T ss_dssp HHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCS
T ss_pred HHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCC
Confidence 77888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeecccccc
Q 016375 324 MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIEATR 385 (390)
Q Consensus 324 ~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (390)
+||+++.|++...|.||+||+||.|++|.|++++++.+.+.+..+++.++..++.++.+...
T Consensus 351 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 351 LVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp CEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC----
T ss_pred EEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhh
Confidence 99999999999999999999999999999999999999999999999999999988876543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.4e-55 Score=396.34 Aligned_cols=368 Identities=31% Similarity=0.524 Sum_probs=319.9
Q ss_pred CCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEE
Q 016375 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 87 (390)
.+|+++++++.+.+.|+.+|+..|+|+|.++++.+.+++++++.+|||+|||++++++++..+... ..+.++||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------~~~~~~li 81 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVSVLV 81 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC------TTCCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc------CCCeeEEE
Confidence 479999999999999999999999999999999999999999999999999999988888765321 14568999
Q ss_pred EcCCHHHHHHHHHHHHHhccCC-CceEEEEecCCchHHHHHhcC-CCCCEEEeCCchhHHHhhcCCCccCCCccEEEEeh
Q 016375 88 LSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (390)
Q Consensus 88 l~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE 165 (390)
++|+++|+.||.+.++++.... ++.+..+.|+........... ..++|+|+||+.+...+.... ..+.++++||+||
T Consensus 82 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~vViDE 160 (391)
T 1xti_A 82 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS-LNLKHIKHFILDE 160 (391)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS-SCCTTCSEEEECS
T ss_pred ECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-ccccccCEEEEeC
Confidence 9999999999999999987655 688888998887665544433 347999999999999877644 5678899999999
Q ss_pred hhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCcc-ccccccceeEEecCCCcchhH
Q 016375 166 ADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY-STVDTLKQQYRFVPAKYKDCY 243 (390)
Q Consensus 166 ~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 243 (390)
+|++.. ..+...+..++...+...+++++|||+++........++..+..+...... .........+...+...+...
T Consensus 161 aH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T 1xti_A 161 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK 240 (391)
T ss_dssp HHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHH
T ss_pred HHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHH
Confidence 998877 467778888888888889999999999999888888888887766554432 233445556666677777788
Q ss_pred HHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCC
Q 016375 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD 323 (390)
Q Consensus 244 ~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~ 323 (390)
+..++....+.++||||++++.++.+++.|.+.+..+..+|++++..+|.++++.|++|+.+|||+|+++++|+|+|+++
T Consensus 241 l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 241 LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcchhhhccccccCCCCcceEEEEeccc-cHHHHHHHHHHhCCcceeeccc
Q 016375 324 MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY-ELEWYLQIEKLIGMLYILFSIE 382 (390)
Q Consensus 324 ~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
+||+++.|++...|.|++||+||.|++|.|++++++. +.+.+..+++.++..++++|.+
T Consensus 321 ~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 321 IAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999999999999999876 5577889999999999888754
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-54 Score=390.21 Aligned_cols=362 Identities=37% Similarity=0.586 Sum_probs=314.4
Q ss_pred ccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcC-CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCce
Q 016375 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (390)
+..+|+++++++.+.+.|+.+|+..|+|+|.++++.+.++ +++++.+|||+|||++++.+++..+.. ..+.+
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~~ 76 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIE 76 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCC
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCCc
Confidence 4568999999999999999999999999999999999988 689999999999999998888766532 14678
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEe
Q 016375 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (390)
Q Consensus 85 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiD 164 (390)
+||++|+++|+.||.+.+..+....++.+....|+........... .++|+|+|++.+.+.+.... ..+.++++||+|
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIiD 154 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT-LNLKNVKYFILD 154 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC-SCTTSCCEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCC-cccccCCEEEEe
Confidence 9999999999999999999998777788888888887665544433 58999999999999887643 557889999999
Q ss_pred hhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHH
Q 016375 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYL 244 (390)
Q Consensus 165 E~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (390)
|+|++....+...+..++..++...+++++|||+++........++..+......... .....+.......+...+
T Consensus 155 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l 230 (367)
T 1hv8_A 155 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINA----NIEQSYVEVNENERFEAL 230 (367)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSS----SSEEEEEECCGGGHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCC----CceEEEEEeChHHHHHHH
Confidence 9999998888889999999988889999999999998888777777766555443222 344445555555566666
Q ss_pred HHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCE
Q 016375 245 VYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM 324 (390)
Q Consensus 245 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~ 324 (390)
..++. ..+.+++|||++++.++.+++.|++.+..+..+|++++..+|.++++.|++|+.+|||+|+++++|+|+|++++
T Consensus 231 ~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~ 309 (367)
T 1hv8_A 231 CRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNC 309 (367)
T ss_dssp HHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSE
T ss_pred HHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCE
Confidence 66665 46788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeecc
Q 016375 325 VINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSI 381 (390)
Q Consensus 325 vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
||+++.|+++..|.|++||++|.|++|.|++++++.+...+..+++.++..++.+++
T Consensus 310 Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 366 (367)
T 1hv8_A 310 VINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLKF 366 (367)
T ss_dssp EEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC-
T ss_pred EEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceecc
Confidence 999999999999999999999999999999999999999999999999998877654
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=6.3e-54 Score=392.12 Aligned_cols=369 Identities=31% Similarity=0.489 Sum_probs=315.6
Q ss_pred ccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcC--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCc
Q 016375 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 83 (390)
...+|+++++++.+.+.|+.+|+..|+++|.++++.+.++ +++++.+|||+|||++++++++..+... ..+.
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------~~~~ 96 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------NKYP 96 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT------SCSC
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc------CCCC
Confidence 4678999999999999999999999999999999999987 8999999999999999999888766432 1455
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccCC-CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEE
Q 016375 84 FACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (390)
Q Consensus 84 ~~lil~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iI 162 (390)
++||++|+++|+.|+.+.++++.... +..+....++...... ....++|+|+||+.+.+.+.+...+.+.++++||
T Consensus 97 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iV 173 (412)
T 3fht_A 97 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 173 (412)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEE
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEE
Confidence 89999999999999999999987643 5666666666554322 2345799999999999998776667778999999
Q ss_pred Eehhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCC-Ccc
Q 016375 163 LDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYK 240 (390)
Q Consensus 163 iDE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 240 (390)
+||+|++.. ..+...+..+...++...+++++|||+++.........+..+..+...............+..... ..+
T Consensus 174 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (412)
T 3fht_A 174 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 253 (412)
T ss_dssp EETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHH
T ss_pred EeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHH
Confidence 999998887 678888888889898889999999999999988898888888877776665555555555555443 445
Q ss_pred hhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCC
Q 016375 241 DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP 320 (390)
Q Consensus 241 ~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~ 320 (390)
...+..++....+.++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|
T Consensus 254 ~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 333 (412)
T 3fht_A 254 FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 333 (412)
T ss_dssp HHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCcc
Confidence 56667777777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCC------CcchhhhccccccCCCCcceEEEEecccc-HHHHHHHHHHhCCcceeecccc
Q 016375 321 SVDMVINYDIPT------NSKDYIHRVGRTARAGRTGVAISLVNQYE-LEWYLQIEKLIGMLYILFSIEA 383 (390)
Q Consensus 321 ~~~~vi~~~~~~------~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
++++||+++.|+ +...|.||+||+||.|+.|.|++++++.+ ...+..+++.++..++.++.+.
T Consensus 334 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 334 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp TEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC----
T ss_pred CCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCcc
Confidence 999999999995 56799999999999999999999998765 7889999999999988877544
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.7e-56 Score=406.70 Aligned_cols=372 Identities=33% Similarity=0.546 Sum_probs=180.5
Q ss_pred cccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCce
Q 016375 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (390)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (390)
+...+|+++++++.+.+.++.+|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~------~~~~~ 91 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------VKAPQ 91 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT------CCSCC
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc------CCCCC
Confidence 446789999999999999999999999999999999999999999999999999999988888765332 24668
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEe
Q 016375 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (390)
Q Consensus 85 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiD 164 (390)
+||++|+++|+.|+.+.+.++....++.+..+.|+........... .++|+|+||+.+.+.+.+.. +...++++||+|
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~-~~~~~~~~vIiD 169 (394)
T 1fuu_A 92 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILD 169 (394)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCC-cchhhCcEEEEE
Confidence 9999999999999999999998888889999999887665544333 58999999999999887643 557889999999
Q ss_pred hhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCC-cchhH
Q 016375 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCY 243 (390)
Q Consensus 165 E~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 243 (390)
|+|++....+...+..+...+++..+++++|||+++........++..+..+...............+...... .+...
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------
T ss_pred ChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHH
Confidence 99999888899999999999998899999999999988888888888777666554443333343333333332 24455
Q ss_pred HHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCC
Q 016375 244 LVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD 323 (390)
Q Consensus 244 ~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~ 323 (390)
+..++......+++|||++++.++.+++.|++.+..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|+++
T Consensus 250 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~ 329 (394)
T 1fuu_A 250 LTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVS 329 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCC
Confidence 66666666778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeeccccc
Q 016375 324 MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIEAT 384 (390)
Q Consensus 324 ~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
+||+++.|+++..|.|++||+||.|++|.|++++++.+.+.+..+++.++.+++.++.+..
T Consensus 330 ~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 330 LVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchh
Confidence 9999999999999999999999999999999999999999999999999999988776543
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=6.9e-54 Score=389.72 Aligned_cols=366 Identities=31% Similarity=0.495 Sum_probs=313.2
Q ss_pred cCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcC--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCce
Q 016375 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (390)
.++|+++++++++.+.++.+|+..|+|+|.++++.+.++ +++++.+|||+|||++++++++..+... ..+++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------~~~~~ 77 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE------DASPQ 77 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT------CCSCC
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC------CCCcc
Confidence 578999999999999999999999999999999999988 8999999999999999998888765322 25668
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEe
Q 016375 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (390)
Q Consensus 85 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiD 164 (390)
+||++|+++|+.|+++.+++++...++.+....++...... ...++|+|+||+.+.+.+.+.. ..+.++++||+|
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIiD 152 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKL-MQLQKIKIFVLD 152 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTC-BCCTTCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCC-cccccCCEEEEE
Confidence 99999999999999999999987777777777766543322 2368999999999999887643 568889999999
Q ss_pred hhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCC-Ccchh
Q 016375 165 EADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDC 242 (390)
Q Consensus 165 E~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 242 (390)
|+|++.. ..+...+..+...++...+++++|||+++.........+..+..+...............+..... ..+..
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHH
Confidence 9998887 677888888889898889999999999999888888888887777666555555555555544433 34455
Q ss_pred HHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC
Q 016375 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (390)
Q Consensus 243 ~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~ 322 (390)
.+..++....+.++||||+++..++.+++.|++.+..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++
T Consensus 233 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 312 (395)
T 3pey_A 233 VLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTV 312 (395)
T ss_dssp HHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccC
Confidence 56666666678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCC------CcchhhhccccccCCCCcceEEEEecc-ccHHHHHHHHHHhC-Ccceeecccc
Q 016375 323 DMVINYDIPT------NSKDYIHRVGRTARAGRTGVAISLVNQ-YELEWYLQIEKLIG-MLYILFSIEA 383 (390)
Q Consensus 323 ~~vi~~~~~~------~~~~~~Q~~GR~~R~~~~~~~i~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 383 (390)
++||+++.|+ ++..|.|++||+||.|++|.|++++.+ ++...+..+++.++ ...+.++.+.
T Consensus 313 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 381 (395)
T 3pey_A 313 SMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDD 381 (395)
T ss_dssp EEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSC
T ss_pred CEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHH
Confidence 9999999998 999999999999999999999999986 55677888889888 6776666443
No 11
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.6e-52 Score=368.18 Aligned_cols=336 Identities=34% Similarity=0.552 Sum_probs=284.5
Q ss_pred CCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 15 LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 15 ~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
+++++.+.|+.+|+..|+|+|.++++.+.+++++++.+|||+|||++++.+++. .+.++||++|+++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~------------~~~~~liv~P~~~L 68 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE------------LGMKSLVVTPTREL 68 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH------------HTCCEEEECSSHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh------------hcCCEEEEeCCHHH
Confidence 578899999999999999999999999999999999999999999998887765 25569999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccccc
Q 016375 95 AIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDF 174 (390)
Q Consensus 95 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~ 174 (390)
+.||.+.+++++...+..+..+.|+.........+. .++|+|+|++.+.+.+.+.. ..+.++++||+||+|++....+
T Consensus 69 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~-~~~~~~~~iViDEah~~~~~~~ 146 (337)
T 2z0m_A 69 TRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGV-IDLSSFEIVIIDEADLMFEMGF 146 (337)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTS-CCGGGCSEEEEESHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCC-cchhhCcEEEEEChHHhhcccc
Confidence 999999999998887888888999887766555444 38999999999998877643 5578899999999999988888
Q ss_pred HHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhhCCC
Q 016375 175 EKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSAS 254 (390)
Q Consensus 175 ~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (390)
...+..++...+...+++++|||+++........++..+..+.... ........+....... ......+....+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 221 (337)
T 2z0m_A 147 IDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACI---GLANVEHKFVHVKDDW--RSKVQALRENKDK 221 (337)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSG---GGGGEEEEEEECSSSS--HHHHHHHHTCCCS
T ss_pred HHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeeccc---ccCCceEEEEEeChHH--HHHHHHHHhCCCC
Confidence 8899999999988888999999999998888888877776654332 2223333333333332 2334556667789
Q ss_pred ceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCc
Q 016375 255 STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNS 334 (390)
Q Consensus 255 ~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~ 334 (390)
++||||++++.++.+++.|. .+..+|++++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|+++
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 99999999999999998876 57899999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCC
Q 016375 335 KDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGM 374 (390)
Q Consensus 335 ~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 374 (390)
..|.|++||+||.|++|.|++|+. .+...+..+++.++.
T Consensus 298 ~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred HHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 999999999999999999999999 888888888877653
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.2e-51 Score=390.91 Aligned_cols=370 Identities=31% Similarity=0.478 Sum_probs=298.1
Q ss_pred cCCcccCC----CCHHHHHHHHhcCCCCCchHHHhhHHhHh--cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCC
Q 016375 7 VKTFKELG----LRDELVEACENVGWKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTV 80 (390)
Q Consensus 7 ~~~~~~~~----~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~--~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~ 80 (390)
..+|+++. +++++.+.++.+|+..|+|+|.++++.++ .++++++.+|||+|||+++++|++..+...... ..
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~--~~ 93 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQ 93 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--ST
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--cc
Confidence 34455553 89999999999999999999999999999 678999999999999999999999888765322 12
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhcc----CCCceEEEEecCCchHHHHHhc-CCCCCEEEeCCchhHHHhhcCCCccC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGS----GISLRCAVLVGGVDMMQQTLAL-GKRPHIVVATPGRLMDHLTNTKGFSL 155 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~t~~~l~~~~~~~~~~~~ 155 (390)
.+.++||++|+++|+.|+.+.++.+.. .....+....|+.......... ...++|+|+||+.|...+.+.....+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 456899999999999999999998742 2345677778877766554444 23689999999999988776433457
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCC-------CccEEEEeecCchhHHHHHHHhcCCCeEEecCCcc----cc
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPR-------MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY----ST 224 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~-------~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 224 (390)
..+++||+||||++.+.+|...+..+...++. ..+++++|||+++.+.......+..+..+...... ..
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccc
Confidence 88999999999999998888888877765532 56899999999998888888887776555433211 11
Q ss_pred ccccceeEEecCCCc-ch-hH---HHHHHHh-hCCCceEEEecchhHHHHHHHHHHhc---CCceeeccCCCCHHHHHHH
Q 016375 225 VDTLKQQYRFVPAKY-KD-CY---LVYILTE-VSASSTMVFTRTCDATRLLALMLRNL---GQRAIPISGHMSQSKRLGA 295 (390)
Q Consensus 225 ~~~~~~~~~~~~~~~-~~-~~---~~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~ 295 (390)
...+.......+... .. .. +...+.. ..+.++||||+++..++.+++.|.+. +..+..+||+++..+|..+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 222223333333221 11 11 1222222 45789999999999999999999987 8899999999999999999
Q ss_pred HHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCc
Q 016375 296 LNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGML 375 (390)
Q Consensus 296 ~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 375 (390)
++.|++|+.+|||||+++++|+|+|++++||+++.|.++..|.|++||+||.|++|.|++++.+.+...+..+++..+..
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~ 413 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIV 413 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCC
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred cee
Q 016375 376 YIL 378 (390)
Q Consensus 376 ~~~ 378 (390)
++.
T Consensus 414 ~~~ 416 (579)
T 3sqw_A 414 IAK 416 (579)
T ss_dssp CCE
T ss_pred ccc
Confidence 643
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.1e-53 Score=396.77 Aligned_cols=368 Identities=31% Similarity=0.490 Sum_probs=171.6
Q ss_pred cCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcC--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCce
Q 016375 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (390)
..+|+.+++++++.+.|+.+||..|+++|.++++.+.++ +++++.+|||+|||+++++|++..+... ..+++
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~------~~~~~ 164 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------NKYPQ 164 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT------SCSCC
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc------CCCCc
Confidence 568999999999999999999999999999999999987 8999999999999999999888765332 14457
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCC-CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEE
Q 016375 85 ACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (390)
Q Consensus 85 ~lil~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIi 163 (390)
+||++|+++|+.|+.+.++.+.... ++.+....++...... ....++|+|+||+.+.+.+.+...+.+.++++||+
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 9999999999999999998876542 4566665555443221 13357899999999999998766677889999999
Q ss_pred ehhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCC-Ccch
Q 016375 164 DEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKD 241 (390)
Q Consensus 164 DE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 241 (390)
||+|++.. ..+...+..+...++...|++++|||++.....+....+..+..+.............+.+..+.. ..+.
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKF 321 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHH
Confidence 99999887 577778888888888889999999999999988888888888777766655555555555444443 3455
Q ss_pred hHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCC
Q 016375 242 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321 (390)
Q Consensus 242 ~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~ 321 (390)
..+..++......+++|||+++..++.+++.|...+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|+
T Consensus 322 ~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~ 401 (479)
T 3fmp_B 322 QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCcccc
Confidence 55666666667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCC------CcchhhhccccccCCCCcceEEEEecccc-HHHHHHHHHHhCCcceeecccc
Q 016375 322 VDMVINYDIPT------NSKDYIHRVGRTARAGRTGVAISLVNQYE-LEWYLQIEKLIGMLYILFSIEA 383 (390)
Q Consensus 322 ~~~vi~~~~~~------~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
+++||+++.|. +...|.||+||+||.|+.|.|++++++.+ ...+..+++.++..++.++.+.
T Consensus 402 v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 470 (479)
T 3fmp_B 402 VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 470 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCcc
Confidence 99999999995 56799999999999999999999998765 7888899999998887776543
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=9.3e-51 Score=384.81 Aligned_cols=363 Identities=31% Similarity=0.481 Sum_probs=293.3
Q ss_pred CCHHHHHHHHhcCCCCCchHHHhhHHhHh--cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCH
Q 016375 15 LRDELVEACENVGWKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (390)
Q Consensus 15 ~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~--~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 92 (390)
+++.+.+.++.+|+..|+|+|.++++.++ .++++++.+|||+|||+++++|++..+.+.... ...+.++||++|++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAPTR 156 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccCCeeEEEEcCcH
Confidence 89999999999999999999999999999 567999999999999999999999988765422 12356899999999
Q ss_pred HHHHHHHHHHHHhcc----CCCceEEEEecCCchHHHHHhc-CCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhh
Q 016375 93 ELAIQISEQFEALGS----GISLRCAVLVGGVDMMQQTLAL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (390)
Q Consensus 93 ~l~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H 167 (390)
+|+.|+++.++.+.. .....+....|+.......... ...++|+|+||+.+.+.+.+.....+..+++||+||||
T Consensus 157 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 236 (563)
T 3i5x_A 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 236 (563)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHH
Confidence 999999999988633 1235577778877765554443 34689999999999988776433357789999999999
Q ss_pred hhcccccHHHHHHHHHhCC-------CCccEEEEeecCchhHHHHHHHhcCCCeEEecCCcc----ccccccceeEEecC
Q 016375 168 RLLNDDFEKSLDEILNVIP-------RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKY----STVDTLKQQYRFVP 236 (390)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~-------~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 236 (390)
++.+.+|...+..+...++ ...|++++|||+++.+.......+..+..+...... .....+...+....
T Consensus 237 ~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (563)
T 3i5x_A 237 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 316 (563)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred HHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECc
Confidence 9999888888887776543 256899999999998888888777776554432211 11222223333332
Q ss_pred CCcc-hh-HH---HHHHHh-hCCCceEEEecchhHHHHHHHHHHhc---CCceeeccCCCCHHHHHHHHHHhccCCccEE
Q 016375 237 AKYK-DC-YL---VYILTE-VSASSTMVFTRTCDATRLLALMLRNL---GQRAIPISGHMSQSKRLGALNKFKAGECNIL 307 (390)
Q Consensus 237 ~~~~-~~-~~---~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~il 307 (390)
.... .. .+ ...+.. ..+.++||||+++..++.+++.|.+. +..+..+|+++++.+|..+++.|++|+.+||
T Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vL 396 (563)
T 3i5x_A 317 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 396 (563)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred hhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEE
Confidence 2211 11 11 122222 46789999999999999999999987 8899999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceee
Q 016375 308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILF 379 (390)
Q Consensus 308 v~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
|||+++++|+|+|++++||+++.|.++..|.|++||+||.|+.|.|++++.+.+...+..+++..+.+++..
T Consensus 397 vaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 468 (563)
T 3i5x_A 397 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 468 (563)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred EEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999888766543
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-52 Score=385.90 Aligned_cols=364 Identities=28% Similarity=0.442 Sum_probs=260.5
Q ss_pred cccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcC--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEE
Q 016375 10 FKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (390)
Q Consensus 10 ~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 87 (390)
+...++++.+.+.+...|+..|+++|.++++.+.++ +++++.+|||+|||++++++++..+... ..++++||
T Consensus 121 ~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~------~~~~~vLv 194 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS------VPKPQAIC 194 (508)
T ss_dssp ------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT------CCSCCEEE
T ss_pred ccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC------CCCceEEE
Confidence 344456777888888899999999999999999997 8999999999999999998888776432 14568999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhh
Q 016375 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (390)
Q Consensus 88 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H 167 (390)
++|+++|+.|+.+.+++++...+..+....++...... ...++|+|+|++.+.+.+.+.. +.+.++++||+||+|
T Consensus 195 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~l~~~~-~~~~~~~lIIiDEaH 269 (508)
T 3fho_A 195 LAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----KIDAQIVIGTPGTVMDLMKRRQ-LDARDIKVFVLDEAD 269 (508)
T ss_dssp ECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEECCHH
T ss_pred EECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc----cCCCCEEEECHHHHHHHHHcCC-ccccCCCEEEEechh
Confidence 99999999999999999987766665555444333221 2368999999999999887643 567889999999999
Q ss_pred hhcc-cccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecC-CCcchhHHH
Q 016375 168 RLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKYKDCYLV 245 (390)
Q Consensus 168 ~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 245 (390)
++.. ..+...+..+...++...+++++|||+++........+...+..+...............+.... ...+...+.
T Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 349 (508)
T 3fho_A 270 NMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLV 349 (508)
T ss_dssp HHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHH
T ss_pred hhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHH
Confidence 8887 67888889999999988999999999999899888888888877766655555445555554443 344455566
Q ss_pred HHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEE
Q 016375 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV 325 (390)
Q Consensus 246 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~v 325 (390)
.++....+.++||||++++.++.+++.|.+.+..+..+|++++..+|..+++.|++|+.+|||+|+++++|+|+|++++|
T Consensus 350 ~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~V 429 (508)
T 3fho_A 350 ELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLV 429 (508)
T ss_dssp HHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEE
T ss_pred HHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEE
Confidence 67777778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCC------CCcchhhhccccccCCCCcceEEEEec-cccHHHHHHHHHHhCCcceeeccccc
Q 016375 326 INYDIP------TNSKDYIHRVGRTARAGRTGVAISLVN-QYELEWYLQIEKLIGMLYILFSIEAT 384 (390)
Q Consensus 326 i~~~~~------~~~~~~~Q~~GR~~R~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
|+++.| .++..|.|++||+||.|++|.|++++. +.+...+..+++.++..++.++.++.
T Consensus 430 I~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~ 495 (508)
T 3fho_A 430 VNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDY 495 (508)
T ss_dssp EC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-------
T ss_pred EEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccH
Confidence 999999 789999999999999999999999998 46678889999999999988876554
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.8e-48 Score=362.25 Aligned_cols=338 Identities=20% Similarity=0.263 Sum_probs=271.5
Q ss_pred CCcccCCCCHHHHHHHHh-cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEE
Q 016375 8 KTFKELGLRDELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~-~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (390)
++|+++++++++.+.|++ +|+..|+|+|.++++.+.+++++++.+|||+|||+++++|++. ....+|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------------~~g~~l 69 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL------------LNGLTV 69 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH------------SSSEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH------------hCCCEE
Confidence 579999999999999998 8999999999999999999999999999999999999888774 245699
Q ss_pred EEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHH----hcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEE
Q 016375 87 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL----ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (390)
Q Consensus 87 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iI 162 (390)
|++|+++|+.|+.+.++.++ +.+..+.++........ ......+|+++||+++....... .+...++++||
T Consensus 70 vi~P~~aL~~q~~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~-~l~~~~~~~vV 144 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQANG----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE-HLAHWNPVLLA 144 (523)
T ss_dssp EECSCHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH-HHTTSCEEEEE
T ss_pred EECChHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH-HHhhCCCCEEE
Confidence 99999999999999998864 67777777776544322 12356899999999985321111 12346789999
Q ss_pred Eehhhhhcccc--cHHHHH---HHHHhCCCCccEEEEeecCchhHHHHHHHh--cCCCeEEecCCccccccccceeEEec
Q 016375 163 LDEADRLLNDD--FEKSLD---EILNVIPRMRQTYLFSATMTKKVKKLQRAC--LKNPVKIEAASKYSTVDTLKQQYRFV 235 (390)
Q Consensus 163 iDE~H~~~~~~--~~~~~~---~~~~~~~~~~~~i~~saT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (390)
|||+|++..++ |+..+. .+...++. .+++++|||+++......... +..+..+...... . ...+...
T Consensus 145 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~~-~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r---~--~l~~~v~ 218 (523)
T 1oyw_A 145 VDEAHCISQWGHDFRPEYAALGQLRQRFPT-LPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDR---P--NIRYMLM 218 (523)
T ss_dssp ESSGGGGCTTSSCCCHHHHGGGGHHHHCTT-SCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCC---T--TEEEEEE
T ss_pred EeCccccCcCCCccHHHHHHHHHHHHhCCC-CCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCC---C--ceEEEEE
Confidence 99999987644 544443 34455544 569999999998765433322 2344433322221 1 1233334
Q ss_pred CCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCC
Q 016375 236 PAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 315 (390)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~ 315 (390)
+...+...+..++....+.++||||++++.++.+++.|.+.+..+..+|++++..+|..+++.|.+|+.+|||||+++++
T Consensus 219 ~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 219 EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp ECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred eCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 44555666777777778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHH
Q 016375 316 GLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (390)
Q Consensus 316 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~ 368 (390)
|+|+|+++.||+++.|+|...|.|++||+||.|+++.|++++++.+...+..+
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~ 351 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877655443
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.9e-48 Score=365.45 Aligned_cols=333 Identities=17% Similarity=0.229 Sum_probs=264.1
Q ss_pred ccCCCCHHHHHHHHh-cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEc
Q 016375 11 KELGLRDELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLS 89 (390)
Q Consensus 11 ~~~~~~~~~~~~l~~-~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 89 (390)
.++++++.+.+.|+. +|+..|+|+|.++++.+++++++++.+|||+|||+++++|++. ...++||++
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------------~~g~~lVis 91 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------------SDGFTLVIC 91 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------------SSSEEEEEC
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------------cCCcEEEEe
Confidence 457889999999998 7999999999999999999999999999999999999988874 345799999
Q ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh------cCCCCCEEEeCCchhH------HHhhcCCCccCCC
Q 016375 90 PTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA------LGKRPHIVVATPGRLM------DHLTNTKGFSLGT 157 (390)
Q Consensus 90 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~i~t~~~l~------~~~~~~~~~~~~~ 157 (390)
|+++|+.|+.+.+..++ +.+..+.++......... ....++|+|+||++|. +.+.+ ...+..
T Consensus 92 P~~~L~~q~~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~ 165 (591)
T 2v1x_A 92 PLISLMEDQLMVLKQLG----ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARR 165 (591)
T ss_dssp SCHHHHHHHHHHHHHHT----CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTC
T ss_pred CHHHHHHHHHHHHHhcC----CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccC
Confidence 99999999999999974 777888888776544322 2457999999999774 22222 234667
Q ss_pred ccEEEEehhhhhcccc--cHHHHH---HHHHhCCCCccEEEEeecCchhHHHHHHHhcCCC--eEEecCCccccccccce
Q 016375 158 LKYLVLDEADRLLNDD--FEKSLD---EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQ 230 (390)
Q Consensus 158 ~~~iIiDE~H~~~~~~--~~~~~~---~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 230 (390)
+++|||||||++..++ |+..+. .+...++ ..+++++|||+++.........+..+ ..+..... ..++
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~---r~nl-- 239 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP-NASLIGLTATATNHVLTDAQKILCIEKCFTFTASFN---RPNL-- 239 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCT-TSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCC---CTTE--
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHhCC-CCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCC---Cccc--
Confidence 9999999999988754 444433 3334444 46799999999998766665555433 22222211 1122
Q ss_pred eEEecCCC----cchhHHHHHHHh-hCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCcc
Q 016375 231 QYRFVPAK----YKDCYLVYILTE-VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305 (390)
Q Consensus 231 ~~~~~~~~----~~~~~~~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 305 (390)
.+...... .....+..++.. ..+.++||||++++.++.+++.|...++.+..+|++++..+|..+++.|.+|+.+
T Consensus 240 ~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~ 319 (591)
T 2v1x_A 240 YYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ 319 (591)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe
Confidence 22222221 122334444443 3678999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHH
Q 016375 306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQ 367 (390)
Q Consensus 306 ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~ 367 (390)
|||+|.++++|+|+|+++.||+++.|.|...|.|++||+||.|+++.|++++++.+...+..
T Consensus 320 VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~ 381 (591)
T 2v1x_A 320 VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISS 381 (591)
T ss_dssp EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHH
T ss_pred EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887665543
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5.6e-47 Score=345.60 Aligned_cols=336 Identities=18% Similarity=0.219 Sum_probs=259.9
Q ss_pred HHHHHHHh-cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHH
Q 016375 18 ELVEACEN-VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (390)
Q Consensus 18 ~~~~~l~~-~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 96 (390)
++.+.++. +|+ +|+|+|.++++.+.+++++++.+|||+|||++++++++..+ . .++++||++|+++|+.
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-~--------~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-R--------KGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-T--------TTCCEEEEESSHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-c--------CCCEEEEEECCHHHHH
Confidence 44555655 688 79999999999999999999999999999998887776654 1 5678999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEecCCchH---HHHHhcC-CCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcc-
Q 016375 97 QISEQFEALGSGISLRCAVLVGGVDMM---QQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN- 171 (390)
Q Consensus 97 q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~- 171 (390)
|+++.++.++. .++++..++|+.... .....+. ..++|+|+||+.+.+.+.. +...++++||+||+|++..
T Consensus 79 q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~ 154 (414)
T 3oiy_A 79 QTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKA 154 (414)
T ss_dssp HHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHC
T ss_pred HHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhc
Confidence 99999999887 778999999998873 3333333 3489999999999877664 4567899999999997653
Q ss_pred ----------cccHHH-HHHHHHhCC-----------CCccEEEEeecC-chhHH-HHHHHhcCCCeEEecCCccccccc
Q 016375 172 ----------DDFEKS-LDEILNVIP-----------RMRQTYLFSATM-TKKVK-KLQRACLKNPVKIEAASKYSTVDT 227 (390)
Q Consensus 172 ----------~~~~~~-~~~~~~~~~-----------~~~~~i~~saT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 227 (390)
.++... +..++..++ ...+++++|||+ +.... ........ +...........
T Consensus 155 ~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 230 (414)
T 3oiy_A 155 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARN 230 (414)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCS
T ss_pred cchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcccccccc
Confidence 334444 666666654 667899999994 44332 22222222 111111222223
Q ss_pred cceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCcee-eccCCCCHHHHHHHHHHhccCCccE
Q 016375 228 LKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI-PISGHMSQSKRLGALNKFKAGECNI 306 (390)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~i 306 (390)
+.+.+... .+...+..++.. .+.++||||+++..++.+++.|.+.+..+. .+||. +|. ++.|++|+.+|
T Consensus 231 i~~~~~~~---~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~v 300 (414)
T 3oiy_A 231 ITHVRISS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINI 300 (414)
T ss_dssp EEEEEESS---CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSE
T ss_pred chheeecc---CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeE
Confidence 33333322 455566666666 458999999999999999999999999998 88884 333 99999999999
Q ss_pred EEE----eCCCCCCCCCCC-CCEEEEecCC--CCcchhhhccccccCCC----CcceEEEEeccccHHHHHHHHHHhC--
Q 016375 307 LIC----TDVASRGLDIPS-VDMVINYDIP--TNSKDYIHRVGRTARAG----RTGVAISLVNQYELEWYLQIEKLIG-- 373 (390)
Q Consensus 307 lv~----t~~~~~G~d~~~-~~~vi~~~~~--~~~~~~~Q~~GR~~R~~----~~~~~i~~~~~~~~~~~~~~~~~~~-- 373 (390)
||+ |+++++|+|+|+ +++||+++.| .++..|.|++||+||.| ++|.+++++ .+...+..+++.++
T Consensus 301 Lvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~ 378 (414)
T 3oiy_A 301 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLI 378 (414)
T ss_dssp EEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHH
T ss_pred EEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhccc
Confidence 999 999999999999 9999999999 99999999999999987 478999998 67777888888888
Q ss_pred Ccceeecccc
Q 016375 374 MLYILFSIEA 383 (390)
Q Consensus 374 ~~~~~~~~~~ 383 (390)
.+++..+++.
T Consensus 379 ~~~~~~~~~~ 388 (414)
T 3oiy_A 379 AEEEIIEEAE 388 (414)
T ss_dssp HCCCEEEGGG
T ss_pred cccccccccc
Confidence 6665555443
No 19
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.7e-45 Score=355.04 Aligned_cols=343 Identities=22% Similarity=0.223 Sum_probs=219.7
Q ss_pred HHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHH
Q 016375 20 VEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 99 (390)
Q Consensus 20 ~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 99 (390)
...++.+|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+..... ..+.++||++|+++|+.||.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----GQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT----TCCCCEEEECSSHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc----CCCCeEEEEECCHHHHHHHH
Confidence 34678899999999999999999999999999999999999999998887755321 12367999999999999999
Q ss_pred HHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccc-cHHHH
Q 016375 100 EQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSL 178 (390)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~ 178 (390)
+.++++....++.+..+.|+.............++|+|+||+.|.+.+.......+.++++||+||||++.... +...+
T Consensus 79 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~ 158 (696)
T 2ykg_A 79 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM 158 (696)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHH
Confidence 99999987778899999998765444444434689999999999999887543357889999999999877643 33333
Q ss_pred HHHHHh-----CCCCccEEEEeecCch--------hHHHHHHHh---------------------cCCCeEEecCCcc--
Q 016375 179 DEILNV-----IPRMRQTYLFSATMTK--------KVKKLQRAC---------------------LKNPVKIEAASKY-- 222 (390)
Q Consensus 179 ~~~~~~-----~~~~~~~i~~saT~~~--------~~~~~~~~~---------------------~~~~~~~~~~~~~-- 222 (390)
...+.. .+..+++++||||+.. ....+.... ...|.........
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 238 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 238 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCS
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCccc
Confidence 223222 2456789999999961 122221111 0111100000000
Q ss_pred cc-----c------------------------------------------------------------------------
Q 016375 223 ST-----V------------------------------------------------------------------------ 225 (390)
Q Consensus 223 ~~-----~------------------------------------------------------------------------ 225 (390)
.. .
T Consensus 239 ~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (696)
T 2ykg_A 239 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 318 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence 00 0
Q ss_pred --------------------------------cccceeEE----------------ecCCCcchhHHHHHHHhh----CC
Q 016375 226 --------------------------------DTLKQQYR----------------FVPAKYKDCYLVYILTEV----SA 253 (390)
Q Consensus 226 --------------------------------~~~~~~~~----------------~~~~~~~~~~~~~~~~~~----~~ 253 (390)
....+.+. ......+...+..++.+. .+
T Consensus 319 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 398 (696)
T 2ykg_A 319 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 398 (696)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTT
T ss_pred HhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 00000000 001233444555566554 57
Q ss_pred CceEEEecchhHHHHHHHHHHhcC----Cceeec--------cCCCCHHHHHHHHHHhcc-CCccEEEEeCCCCCCCCCC
Q 016375 254 SSTMVFTRTCDATRLLALMLRNLG----QRAIPI--------SGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIP 320 (390)
Q Consensus 254 ~~~lvf~~~~~~~~~l~~~l~~~~----~~~~~~--------~~~~~~~~~~~~~~~f~~-~~~~ilv~t~~~~~G~d~~ 320 (390)
.++||||+++..++.+++.|.+.+ +.+..+ |++++..+|.++++.|++ |+.+|||||+++++|+|+|
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip 478 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 478 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---C
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCc
Confidence 899999999999999999999987 788888 459999999999999998 9999999999999999999
Q ss_pred CCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHH
Q 016375 321 SVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (390)
Q Consensus 321 ~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~ 368 (390)
++++||+++.|+++..|.||+|| ||. ++|.|+.+++..+......+
T Consensus 479 ~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 479 QCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp CCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 99999999999999999999999 998 77999999998777444433
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-43 Score=344.54 Aligned_cols=340 Identities=22% Similarity=0.262 Sum_probs=257.9
Q ss_pred ccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHh-HhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCC
Q 016375 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPH-ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~-i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~ 82 (390)
+.+..+|+++++++.+.+.++.+|+..|+++|.++++. +..++++++.+|||+|||+++.++++..+.. .+
T Consensus 4 ~~~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~ 75 (715)
T 2va8_A 4 ELEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NG 75 (715)
T ss_dssp --CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SC
T ss_pred ccccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CC
Confidence 34557899999999999999999999999999999999 7788999999999999999999999887764 35
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEE
Q 016375 83 FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (390)
Q Consensus 83 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iI 162 (390)
.++++++|+++|+.|+++.++.+. ..+..+...+|+........ ..++|+|+||+++...+.+.. ..++++++||
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~~---~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vI 150 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAWL---KNYDIIITTYEKLDSLWRHRP-EWLNEVNYFV 150 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGGG---GGCSEEEECHHHHHHHHHHCC-GGGGGEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhhc---CCCCEEEEcHHHHHHHHhCCh-hHhhccCEEE
Confidence 689999999999999999996543 34678888888776544322 368999999999999887754 3378899999
Q ss_pred EehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccc-ccc--------ceeEE
Q 016375 163 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTV-DTL--------KQQYR 233 (390)
Q Consensus 163 iDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~ 233 (390)
+||+|.+.+..++..+..++..++ ..+++++|||+++. ..+... +..+. +......... ... .....
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~-l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~ 226 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKW-LGAEP-VATNWRPVPLIEGVIYPERKKKEYNVI 226 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHH-HTCEE-EECCCCSSCEEEEEEEECSSTTEEEEE
T ss_pred EechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHH-hCCCc-cCCCCCCCCceEEEEecCCcccceeee
Confidence 999999877677777777776665 57799999999753 333332 22221 1111110000 000 00111
Q ss_pred ecC--------CCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcC----------------------------
Q 016375 234 FVP--------AKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG---------------------------- 277 (390)
Q Consensus 234 ~~~--------~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~---------------------------- 277 (390)
... .......+...+ ..++++||||++++.++.+++.|.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 304 (715)
T 2va8_A 227 FKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEK 304 (715)
T ss_dssp ETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHH
T ss_pred cCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccccc
Confidence 111 111112222222 257899999999999999999998642
Q ss_pred --------CceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEE----ec-------CCCCcchhh
Q 016375 278 --------QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----YD-------IPTNSKDYI 338 (390)
Q Consensus 278 --------~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~----~~-------~~~~~~~~~ 338 (390)
..+..+|++++..+|..+++.|.+|..+|||||+++++|+|+|++++||. |+ .|.+..+|.
T Consensus 305 ~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~ 384 (715)
T 2va8_A 305 ELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYK 384 (715)
T ss_dssp HHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHH
T ss_pred HHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHH
Confidence 23788999999999999999999999999999999999999999999998 88 789999999
Q ss_pred hccccccCCC--CcceEEEEeccccH
Q 016375 339 HRVGRTARAG--RTGVAISLVNQYEL 362 (390)
Q Consensus 339 Q~~GR~~R~~--~~~~~i~~~~~~~~ 362 (390)
||+||+||.| ..|.|+.++.+.+.
T Consensus 385 Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 385 QMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HHhhhcCCCCCCCCceEEEEeCCchH
Confidence 9999999987 46889999987653
No 21
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.5e-44 Score=332.93 Aligned_cols=324 Identities=23% Similarity=0.239 Sum_probs=246.2
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCC
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 109 (390)
+|+|+|.++++.+.++ ++++.+|||+|||++++.++...+.. .+.++||++|+++|+.||.+++.++....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 6999999999999998 99999999999999998888777652 56789999999999999999999987544
Q ss_pred CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCc
Q 016375 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189 (390)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~ 189 (390)
...+..++|+.........+ ..++|+|+|++.+.+.+.... +...++++||+||+|++........+...+....+..
T Consensus 80 ~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~ 157 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGR-ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNP 157 (494)
T ss_dssp GGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTS-CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSC
T ss_pred hhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCC-cchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCC
Confidence 56888888888765443322 358999999999999877643 5678899999999998876544444444555455667
Q ss_pred cEEEEeecCchhHHH---HHHHhcCCCeEEecCCccccccc---cceeEE------------------------------
Q 016375 190 QTYLFSATMTKKVKK---LQRACLKNPVKIEAASKYSTVDT---LKQQYR------------------------------ 233 (390)
Q Consensus 190 ~~i~~saT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------------------------ 233 (390)
+++++||||...... +...................... ......
T Consensus 158 ~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
T 1wp9_A 158 LVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG 237 (494)
T ss_dssp CEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999854333 22222111111110000000000 000000
Q ss_pred --------------------------------------------------------------------------------
Q 016375 234 -------------------------------------------------------------------------------- 233 (390)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (390)
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (494)
T 1wp9_A 238 LLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASK 317 (494)
T ss_dssp SSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhh
Confidence
Q ss_pred --------------------ecCCCcchhHHHHHHHh----hCCCceEEEecchhHHHHHHHHHHhcCCceeeccC----
Q 016375 234 --------------------FVPAKYKDCYLVYILTE----VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG---- 285 (390)
Q Consensus 234 --------------------~~~~~~~~~~~~~~~~~----~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~---- 285 (390)
......+...+..++.+ ..+.++||||++...++.+++.|...++.+..+||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~ 397 (494)
T 1wp9_A 318 EIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASK 397 (494)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccc
Confidence 00122233444555555 46899999999999999999999999999999999
Q ss_pred ----CCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEecccc
Q 016375 286 ----HMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYE 361 (390)
Q Consensus 286 ----~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~ 361 (390)
+++..+|.++++.|++|+++|||+|+++++|+|+|++++||+++.|+++..|.|++||+||.|+ |.++.++.+++
T Consensus 398 ~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 398 ENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp -------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred cccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999999999999999998 99999999877
Q ss_pred HHHH
Q 016375 362 LEWY 365 (390)
Q Consensus 362 ~~~~ 365 (390)
.+..
T Consensus 477 ~ee~ 480 (494)
T 1wp9_A 477 RDEA 480 (494)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3e-44 Score=348.33 Aligned_cols=336 Identities=20% Similarity=0.216 Sum_probs=261.9
Q ss_pred CcccCCCCHHHHHHHHhcCCCCCchHHHhhHHh-HhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEE
Q 016375 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPH-ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (390)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~-i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 87 (390)
+|+++++++.+.+.++.+|+..|+++|.++++. +..++++++.+|||+|||+++.++++..+.. .+.++++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~~l~ 73 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--------QGGKAVY 73 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH--------HCSEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCCEEEE
Confidence 588999999999999999999999999999998 8889999999999999999999999887764 2568999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhh
Q 016375 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (390)
Q Consensus 88 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H 167 (390)
++|+++|+.|++++++.+.. .++.+..++|+....... ...++|+|+||+++...+.+.. ..++++++||+||+|
T Consensus 74 i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vIiDE~H 148 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGS-SWIKDVKILVADEIH 148 (720)
T ss_dssp ECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTC-TTGGGEEEEEEETGG
T ss_pred EcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcCh-hhhhcCCEEEEECCc
Confidence 99999999999999975543 467888888876654332 2368999999999988877643 336789999999999
Q ss_pred hhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCcccccc---ccceeEEecC-----CCc
Q 016375 168 RLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVD---TLKQQYRFVP-----AKY 239 (390)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~ 239 (390)
.+.+......+..++..++...+++++|||+++. ..+... +... .+.......... .......... ...
T Consensus 149 ~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~~-l~~~-~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T 2zj8_A 149 LIGSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAEW-LNAE-LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSS 225 (720)
T ss_dssp GGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHHH-TTEE-EEECCCCSSEEEEEEEETTEEEETTSCEEECSS
T ss_pred ccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHHH-hCCc-ccCCCCCCCcceEEEEeCCeeeccccchhhhhH
Confidence 8887778888888887776678899999999763 333332 2221 111111100000 0000111111 122
Q ss_pred chhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcC---------------------------------CceeeccCC
Q 016375 240 KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG---------------------------------QRAIPISGH 286 (390)
Q Consensus 240 ~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~~~ 286 (390)
....+...+. .++++||||++++.++.++..|.+.. ..+..+|++
T Consensus 226 ~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~ 303 (720)
T 2zj8_A 226 WEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAG 303 (720)
T ss_dssp TTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCC
Confidence 2233333332 57899999999999999999887531 238899999
Q ss_pred CCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEE----ec----CCCCcchhhhccccccCCC--CcceEEEE
Q 016375 287 MSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----YD----IPTNSKDYIHRVGRTARAG--RTGVAISL 356 (390)
Q Consensus 287 ~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~----~~----~~~~~~~~~Q~~GR~~R~~--~~~~~i~~ 356 (390)
++..+|..+++.|++|..+|||||+++++|+|+|++++||. |+ .|.+..+|.|++||+||.| ..|.|+++
T Consensus 304 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 383 (720)
T 2zj8_A 304 LGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIV 383 (720)
T ss_dssp SCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999987 55 5789999999999999987 46889999
Q ss_pred eccccH
Q 016375 357 VNQYEL 362 (390)
Q Consensus 357 ~~~~~~ 362 (390)
+.+.+.
T Consensus 384 ~~~~~~ 389 (720)
T 2zj8_A 384 STSDDP 389 (720)
T ss_dssp CSSSCH
T ss_pred ecCccH
Confidence 998873
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2e-44 Score=341.73 Aligned_cols=331 Identities=20% Similarity=0.205 Sum_probs=197.0
Q ss_pred cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
++..+|+|+|.++++.+.+++++++.+|||+|||++++++++..+.... ...+.++||++|+++|+.||.+.++.+
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc----ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3445899999999999999999999999999999999999888775431 112678999999999999999999999
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHH-HHHHHHh
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKS-LDEILNV 184 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~-~~~~~~~ 184 (390)
....++.+..++|+.............++|+|+||+.+.+.+.......+..+++||+||+|++........ +......
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp HGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred hcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 876678999999988666555444456899999999999988775533688899999999999877543322 2222222
Q ss_pred ----CCCCccEEEEeecCchh-----------HHHHHHHhcCCCeEEecCCcccc----ccccceeEEec----------
Q 016375 185 ----IPRMRQTYLFSATMTKK-----------VKKLQRACLKNPVKIEAASKYST----VDTLKQQYRFV---------- 235 (390)
Q Consensus 185 ----~~~~~~~i~~saT~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------- 235 (390)
.+...+++++|||+... +..+.... .............. ...........
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 237 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHH-TCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhc-CCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHH
Confidence 13457899999999531 11111111 11111100000000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 016375 236 -------------------------------------------------------------------------------- 235 (390)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (390)
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (556)
T 4a2p_A 238 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 317 (556)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------CCCcchhHHHHHHHh----hCCCceEEEe
Q 016375 236 ---------------------------------------------------PAKYKDCYLVYILTE----VSASSTMVFT 260 (390)
Q Consensus 236 ---------------------------------------------------~~~~~~~~~~~~~~~----~~~~~~lvf~ 260 (390)
....+...+..++.+ ..+.++||||
T Consensus 318 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~ 397 (556)
T 4a2p_A 318 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 397 (556)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 012233334444433 4678999999
Q ss_pred cchhHHHHHHHHHHhc------------CCceeeccCCCCHHHHHHHHHHhcc-CCccEEEEeCCCCCCCCCCCCCEEEE
Q 016375 261 RTCDATRLLALMLRNL------------GQRAIPISGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVIN 327 (390)
Q Consensus 261 ~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~ilv~t~~~~~G~d~~~~~~vi~ 327 (390)
++...++.+++.|.+. |.....+|++++..+|.++++.|++ |+++|||+|+++++|+|+|++++||+
T Consensus 398 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~ 477 (556)
T 4a2p_A 398 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 477 (556)
T ss_dssp SSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEE
T ss_pred ccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEE
Confidence 9999999999999876 4444556778999999999999999 99999999999999999999999999
Q ss_pred ecCCCCcchhhhccccccCCCCcceEEEEeccccHH
Q 016375 328 YDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELE 363 (390)
Q Consensus 328 ~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~ 363 (390)
++.|+|+..|.||+|| ||. ++|.|+.++.+.+.+
T Consensus 478 ~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 478 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp ETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 9999999999999999 998 789999999987764
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7.5e-44 Score=337.89 Aligned_cols=333 Identities=22% Similarity=0.212 Sum_probs=227.0
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCC
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 109 (390)
.|+|+|.++++.+.+++++++.+|||+|||++++++++..+.+... ..+.++||++|+++|+.||.+.++++....
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC----GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 6999999999999999999999999999999999999887765321 136789999999999999999999998877
Q ss_pred CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccc-cHHHHHHHHHhC---
Q 016375 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNVI--- 185 (390)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~~~~~~--- 185 (390)
++.+..++|+.............++|+|+||+.+.+.+.......+.++++||+||||++.... +...+...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 8999999999876655444445689999999999998887553367889999999999987753 333333333322
Q ss_pred --CCCccEEEEeecCchh--------HHHHH--HHhcCCCeEEecCCccc----cccccceeEEec--------------
Q 016375 186 --PRMRQTYLFSATMTKK--------VKKLQ--RACLKNPVKIEAASKYS----TVDTLKQQYRFV-------------- 235 (390)
Q Consensus 186 --~~~~~~i~~saT~~~~--------~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-------------- 235 (390)
....+++++|||+... ...+. ...+............. ............
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQ 239 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHH
Confidence 2446899999999542 11111 11111111111000000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 016375 236 -------------------------------------------------------------------------------- 235 (390)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (390)
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (555)
T 3tbk_A 240 LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISED 319 (555)
T ss_dssp HHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence
Q ss_pred ------------------------------------------------CCCcchhHHHHHHHh----hCCCceEEEecch
Q 016375 236 ------------------------------------------------PAKYKDCYLVYILTE----VSASSTMVFTRTC 263 (390)
Q Consensus 236 ------------------------------------------------~~~~~~~~~~~~~~~----~~~~~~lvf~~~~ 263 (390)
....+...+..++.+ ..+.++||||++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~ 399 (555)
T 3tbk_A 320 AQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTR 399 (555)
T ss_dssp SCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSH
T ss_pred hhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcH
Confidence 012233334444433 3568999999999
Q ss_pred hHHHHHHHHHHhcC----C--------ceeeccCCCCHHHHHHHHHHhcc-CCccEEEEeCCCCCCCCCCCCCEEEEecC
Q 016375 264 DATRLLALMLRNLG----Q--------RAIPISGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVINYDI 330 (390)
Q Consensus 264 ~~~~~l~~~l~~~~----~--------~~~~~~~~~~~~~~~~~~~~f~~-~~~~ilv~t~~~~~G~d~~~~~~vi~~~~ 330 (390)
..++.+++.|...+ + ....+||+++..+|.++++.|++ |+++|||||+++++|+|+|++++||+++.
T Consensus 400 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 400 ALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY 479 (555)
T ss_dssp HHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESC
T ss_pred HHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC
Confidence 99999999999864 2 33445568999999999999999 99999999999999999999999999999
Q ss_pred CCCcchhhhccccccCCCCcceEEEEeccccHHHHHHH
Q 016375 331 PTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (390)
Q Consensus 331 ~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~ 368 (390)
|+|+..|.||+|| ||. ++|.|+.++.+.+.+....+
T Consensus 480 p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 480 VGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999999 898 88999999998877655544
No 25
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-43 Score=347.00 Aligned_cols=332 Identities=20% Similarity=0.216 Sum_probs=205.5
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+|+..|+|+|.++++.+.+++++++.+|||+|||++++++++..+.+.. ...+.++||++|+++|+.||.+.++.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999888776531 11367899999999999999999999
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccc-cHHHHHHHHH
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILN 183 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~~~~ 183 (390)
+....++.+..++|+.............++|+|+||+.|.+.+.......+.++++||+||||++.... +...+..+..
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred hcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 987667899999999876665555556789999999999998887543367889999999999887753 3333333332
Q ss_pred h----CCCCccEEEEeecCch-----------hHHHHHHHhcCCCeEEecCCcccc----ccccceeEEec---------
Q 016375 184 V----IPRMRQTYLFSATMTK-----------KVKKLQRACLKNPVKIEAASKYST----VDTLKQQYRFV--------- 235 (390)
Q Consensus 184 ~----~~~~~~~i~~saT~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--------- 235 (390)
. ....++++++|||+.. .+..+... +.............. ...........
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~-L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSY-LDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH-HTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHh-cCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHH
Confidence 2 1455789999999953 11111111 111110000000000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 016375 236 -------------------------------------------------------------------------------- 235 (390)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (390)
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 557 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred ----------------------------------------------------CCCcchhHHHHHHHh----hCCCceEEE
Q 016375 236 ----------------------------------------------------PAKYKDCYLVYILTE----VSASSTMVF 259 (390)
Q Consensus 236 ----------------------------------------------------~~~~~~~~~~~~~~~----~~~~~~lvf 259 (390)
....+...+..++.. ..+.++|||
T Consensus 558 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF 637 (797)
T 4a2q_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (797)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred hhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEE
Confidence 012233334444443 467899999
Q ss_pred ecchhHHHHHHHHHHhc------------CCceeeccCCCCHHHHHHHHHHhcc-CCccEEEEeCCCCCCCCCCCCCEEE
Q 016375 260 TRTCDATRLLALMLRNL------------GQRAIPISGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVI 326 (390)
Q Consensus 260 ~~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~ilv~t~~~~~G~d~~~~~~vi 326 (390)
|+++..++.+++.|.+. |.....+|++++..+|.++++.|++ |+++|||||+++++|+|+|++++||
T Consensus 638 ~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI 717 (797)
T 4a2q_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (797)
T ss_dssp ESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEE
T ss_pred ECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEE
Confidence 99999999999999874 4455666888999999999999999 9999999999999999999999999
Q ss_pred EecCCCCcchhhhccccccCCCCcceEEEEeccccHH
Q 016375 327 NYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELE 363 (390)
Q Consensus 327 ~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~ 363 (390)
+|+.|+|+..|.||+|| ||. ++|.|+.++.+.+.+
T Consensus 718 ~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 718 LYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp EESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred EeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999999999999 998 789999999887654
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.4e-43 Score=342.63 Aligned_cols=335 Identities=19% Similarity=0.253 Sum_probs=255.1
Q ss_pred CcccCC--CCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEE
Q 016375 9 TFKELG--LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (390)
Q Consensus 9 ~~~~~~--~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (390)
+|++++ +++.+.+.++.+||..|+++|.++++.+.+++++++.+|||+|||+++.++++..+.. +.+++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~l 72 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSL 72 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCcEE
Confidence 578888 9999999999999999999999999999999999999999999999999988877642 56799
Q ss_pred EEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehh
Q 016375 87 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (390)
Q Consensus 87 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~ 166 (390)
+++|+++|+.|+++.++.+. ..++.+...+|+...... ....++|+|+||+++...+.+.. ..++++++||+||+
T Consensus 73 ~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~-~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 73 YVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRA-SWIKAVSCLVVDEI 147 (702)
T ss_dssp EEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTC-SGGGGCCEEEETTG
T ss_pred EEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcCh-hHHhhcCEEEEeee
Confidence 99999999999999996543 447888888888765443 22478999999999999887754 33778999999999
Q ss_pred hhhcccccHHHHHHHHHhC---CCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccc-cc--cceeEEecCCCc-
Q 016375 167 DRLLNDDFEKSLDEILNVI---PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTV-DT--LKQQYRFVPAKY- 239 (390)
Q Consensus 167 H~~~~~~~~~~~~~~~~~~---~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~- 239 (390)
|.+.+......+..++..+ .+..+++++|||+++ ...+.+ .+..+. +......... .. ............
T Consensus 148 H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 224 (702)
T 2p6r_A 148 HLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDWRPVPLVEGVLCEGTLELFDGAFS 224 (702)
T ss_dssp GGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCCCSSCEEEEEECSSEEEEEETTEE
T ss_pred eecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCCCCccceEEEeeCCeeeccCcchh
Confidence 9888766666666665544 566789999999986 343443 333221 2111111000 00 000011111110
Q ss_pred ------chhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhc------------------------------CCceeec
Q 016375 240 ------KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL------------------------------GQRAIPI 283 (390)
Q Consensus 240 ------~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~------------------------------~~~~~~~ 283 (390)
....+...+ ..++++||||++++.++.+++.|.+. +..+..+
T Consensus 225 ~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~ 302 (702)
T 2p6r_A 225 TSRRVKFEELVEECV--AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFH 302 (702)
T ss_dssp EEEECCHHHHHHHHH--HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEE
T ss_pred hhhhhhHHHHHHHHH--hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEe
Confidence 122222332 25789999999999999999988753 1347789
Q ss_pred cCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEE----ec---CCCCcchhhhccccccCCC--CcceEE
Q 016375 284 SGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----YD---IPTNSKDYIHRVGRTARAG--RTGVAI 354 (390)
Q Consensus 284 ~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~----~~---~~~~~~~~~Q~~GR~~R~~--~~~~~i 354 (390)
|++++..+|..+++.|.+|..+|||||+++++|+|+|++++||. |+ .|.+..+|.||+||+||.| ..|.|+
T Consensus 303 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 382 (702)
T 2p6r_A 303 HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAI 382 (702)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEE
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999988 55 6789999999999999998 468999
Q ss_pred EEeccccH
Q 016375 355 SLVNQYEL 362 (390)
Q Consensus 355 ~~~~~~~~ 362 (390)
.++.+.+.
T Consensus 383 ~l~~~~~~ 390 (702)
T 2p6r_A 383 IIVGKRDR 390 (702)
T ss_dssp EECCGGGH
T ss_pred EEecCccH
Confidence 99998874
No 27
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.4e-42 Score=342.90 Aligned_cols=332 Identities=20% Similarity=0.211 Sum_probs=204.3
Q ss_pred cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.|+..|+++|.++++.+.+++++++.+|||+|||++++.+++..+.+.. ...+.++||++|+++|+.||.++++.+
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~----~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC----SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999988876654321 112678999999999999999999999
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccc-cHHHHHHHHHh
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNV 184 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~~~~~ 184 (390)
....++.+..++|+.............++|+|+||+.|.+.+.+.....+.++++||+||||++.... +...+..+...
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp HHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred hcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 87778999999998866554444444689999999999998887553367889999999999887753 33333333332
Q ss_pred ----CCCCccEEEEeecCch-----------hHHHHHHHh------------------cCCCeEEecCCccccccc----
Q 016375 185 ----IPRMRQTYLFSATMTK-----------KVKKLQRAC------------------LKNPVKIEAASKYSTVDT---- 227 (390)
Q Consensus 185 ----~~~~~~~i~~saT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~---- 227 (390)
....++++++|||+.. .+..+.... ...+..............
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 1445789999999952 111111111 111111100000000000
Q ss_pred ----------c-cee--------E--E-----------------------------------------------------
Q 016375 228 ----------L-KQQ--------Y--R----------------------------------------------------- 233 (390)
Q Consensus 228 ----------~-~~~--------~--~----------------------------------------------------- 233 (390)
. ... . .
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 000 0 0
Q ss_pred ------------------------------------------------ecCCCcchhHHHHHHHh----hCCCceEEEec
Q 016375 234 ------------------------------------------------FVPAKYKDCYLVYILTE----VSASSTMVFTR 261 (390)
Q Consensus 234 ------------------------------------------------~~~~~~~~~~~~~~~~~----~~~~~~lvf~~ 261 (390)
......+...+..++.+ ..+.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 00012233334444444 35689999999
Q ss_pred chhHHHHHHHHHHhc------------CCceeeccCCCCHHHHHHHHHHhcc-CCccEEEEeCCCCCCCCCCCCCEEEEe
Q 016375 262 TCDATRLLALMLRNL------------GQRAIPISGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVINY 328 (390)
Q Consensus 262 ~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~ilv~t~~~~~G~d~~~~~~vi~~ 328 (390)
++..++.+++.|.+. |.....+||+++..+|.++++.|++ |+++|||+|+++++|+|+|++++||+|
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEe
Confidence 999999999999986 4445566888999999999999999 999999999999999999999999999
Q ss_pred cCCCCcchhhhccccccCCCCcceEEEEeccccHH
Q 016375 329 DIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELE 363 (390)
Q Consensus 329 ~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~ 363 (390)
+.|+|+..|.||+|| ||. ++|.|+.++...+.+
T Consensus 720 D~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp SCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999999 998 779999999886654
No 28
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-43 Score=347.09 Aligned_cols=331 Identities=18% Similarity=0.176 Sum_probs=251.6
Q ss_pred CCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEE
Q 016375 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 87 (390)
..|...+++......+...+...|+++|.++++.+.+++++++.+|||+|||+++.++++..+. .+++++|
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~---------~g~rvlv 232 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---------NKQRVIY 232 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH---------TTCEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh---------cCCeEEE
Confidence 3556666666665555554444799999999999999999999999999999999998887763 4678999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhh
Q 016375 88 LSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 167 (390)
Q Consensus 88 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H 167 (390)
++|+++|+.|+++.+..+.. .+..++|+... ..+++|+|+|++.|.+.+.+.. ..+.++++|||||+|
T Consensus 233 l~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~-~~l~~l~lVVIDEaH 300 (1108)
T 3l9o_A 233 TSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDEVH 300 (1108)
T ss_dssp EESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCS-SHHHHEEEEEEETGG
T ss_pred EcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCc-cccccCCEEEEhhhh
Confidence 99999999999999999764 46667777653 3458999999999999887754 346789999999999
Q ss_pred hhcccccHHHHHHHHHhCCCCccEEEEeecCchhHH--HHHHHhcCCCeEEecCCccccccccceeE---------EecC
Q 016375 168 RLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVK--KLQRACLKNPVKIEAASKYSTVDTLKQQY---------RFVP 236 (390)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 236 (390)
++.+.+++..+..++..++...+++++|||+++..+ .........+..+......... +...+ ..+.
T Consensus 301 ~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p--l~~~~~~~~~~~~~~~vd 378 (1108)
T 3l9o_A 301 YMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP--LQHYLFPAHGDGIYLVVD 378 (1108)
T ss_dssp GTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC--EEEEEEETTSSCCEEEEE
T ss_pred hccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc--ceEEEeecCCcceeeeec
Confidence 999888888999999999999999999999877533 3444444443333222111110 00000 0000
Q ss_pred C----------------------------------------------CcchhHHHHHHHhhCCCceEEEecchhHHHHHH
Q 016375 237 A----------------------------------------------KYKDCYLVYILTEVSASSTMVFTRTCDATRLLA 270 (390)
Q Consensus 237 ~----------------------------------------------~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~ 270 (390)
. ......+...+......++||||+++..++.++
T Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la 458 (1108)
T 3l9o_A 379 EKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELA 458 (1108)
T ss_dssp TTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHH
Confidence 0 111112333344446679999999999999999
Q ss_pred HHHHhcCCc---------------------------------------eeeccCCCCHHHHHHHHHHhccCCccEEEEeC
Q 016375 271 LMLRNLGQR---------------------------------------AIPISGHMSQSKRLGALNKFKAGECNILICTD 311 (390)
Q Consensus 271 ~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~ 311 (390)
..|...+.. +..+||++++.+|..+++.|.+|.++|||||+
T Consensus 459 ~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~ 538 (1108)
T 3l9o_A 459 LKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATE 538 (1108)
T ss_dssp HHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECc
Confidence 988653222 68899999999999999999999999999999
Q ss_pred CCCCCCCCCCCCEEEEecCCC--------CcchhhhccccccCCC--CcceEEEEecccc
Q 016375 312 VASRGLDIPSVDMVINYDIPT--------NSKDYIHRVGRTARAG--RTGVAISLVNQYE 361 (390)
Q Consensus 312 ~~~~G~d~~~~~~vi~~~~~~--------~~~~~~Q~~GR~~R~~--~~~~~i~~~~~~~ 361 (390)
++++|+|+|++++||.++.++ ++.+|.|++||+||.| ..|.|++++++..
T Consensus 539 vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 539 TFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp CCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred HHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 999999999999999766543 5667999999999999 5688999887763
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-41 Score=334.59 Aligned_cols=321 Identities=19% Similarity=0.201 Sum_probs=247.6
Q ss_pred HHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHH
Q 016375 23 CENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (390)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 102 (390)
.+.+|| +|+++|.++++.+.+++++++.+|||+|||+++.++++..+. .+.+++|++|+++|+.|+++++
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~---------~g~rvL~l~PtkaLa~Q~~~~l 149 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---------NKQRVIYTSPIKALSNQKYREL 149 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH---------TTCEEEEEESSHHHHHHHHHHH
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc---------cCCeEEEECChHHHHHHHHHHH
Confidence 356788 599999999999999999999999999999999888776653 4678999999999999999999
Q ss_pred HHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHH
Q 016375 103 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182 (390)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~ 182 (390)
..+.. .+..++|+.... .+++|+|+|++.|.+.+.+.. ..+.++++||+||+|++.+...+..+..++
T Consensus 150 ~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~-~~l~~l~lVViDEaH~l~d~~rg~~~e~il 217 (1010)
T 2xgj_A 150 LAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDEVHYMRDKERGVVWEETI 217 (1010)
T ss_dssp HHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTC-TTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred HHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCc-chhhcCCEEEEechhhhcccchhHHHHHHH
Confidence 98764 566677776542 357999999999998877643 457889999999999998888888888999
Q ss_pred HhCCCCccEEEEeecCchhHH--HHHHHhcCCCeEEecCCccccccccceeEEe---------cCC--------------
Q 016375 183 NVIPRMRQTYLFSATMTKKVK--KLQRACLKNPVKIEAASKYSTVDTLKQQYRF---------VPA-------------- 237 (390)
Q Consensus 183 ~~~~~~~~~i~~saT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-------------- 237 (390)
..++...+++++|||+++..+ .........+..+........ .+...+.. ...
T Consensus 218 ~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1010)
T 2xgj_A 218 ILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT--PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA 295 (1010)
T ss_dssp HHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSS--CEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHH
T ss_pred HhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc--cceEEEEecCCcceeeeeccccccchHHHHHHHH
Confidence 999999999999999877543 222222232322221111110 00000000 000
Q ss_pred --------------------------------CcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCc------
Q 016375 238 --------------------------------KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR------ 279 (390)
Q Consensus 238 --------------------------------~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~------ 279 (390)
......+...+......++||||+++..++.+++.|...+..
T Consensus 296 ~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~ 375 (1010)
T 2xgj_A 296 SISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 375 (1010)
T ss_dssp TCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHH
T ss_pred HHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHH
Confidence 111122333444446679999999999999999988765432
Q ss_pred ---------------------------------eeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEE
Q 016375 280 ---------------------------------AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI 326 (390)
Q Consensus 280 ---------------------------------~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi 326 (390)
+..+||++++.+|..+++.|++|.++|||||+++++|+|+|.+++||
T Consensus 376 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI 455 (1010)
T 2xgj_A 376 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 455 (1010)
T ss_dssp HHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEE
T ss_pred HHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEE
Confidence 67899999999999999999999999999999999999999999999
Q ss_pred E----ecC----CCCcchhhhccccccCCCC--cceEEEEeccc-cHHHHHH
Q 016375 327 N----YDI----PTNSKDYIHRVGRTARAGR--TGVAISLVNQY-ELEWYLQ 367 (390)
Q Consensus 327 ~----~~~----~~~~~~~~Q~~GR~~R~~~--~~~~i~~~~~~-~~~~~~~ 367 (390)
. |+. |+++.+|.|++||+||.|. .|.|++++++. +...+..
T Consensus 456 ~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~ 507 (1010)
T 2xgj_A 456 TSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 507 (1010)
T ss_dssp SCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHH
T ss_pred eCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHH
Confidence 8 887 8899999999999999986 49999999865 4444433
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=8.8e-42 Score=339.46 Aligned_cols=324 Identities=19% Similarity=0.227 Sum_probs=250.2
Q ss_pred HHHHH-hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHH
Q 016375 20 VEACE-NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (390)
Q Consensus 20 ~~~l~-~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 98 (390)
.+.++ .+|| +|+++|.++++.+.+++++++.+|||+|||++++.+++..+ . .+.++||++|+++|+.|+
T Consensus 68 ~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-~--------~~~~~Lil~PtreLa~Q~ 137 (1104)
T 4ddu_A 68 RSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-R--------KGKKSALVFPTVTLVKQT 137 (1104)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-T--------TTCCEEEEESSHHHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-h--------cCCeEEEEechHHHHHHH
Confidence 34443 4788 79999999999999999999999999999998777766655 1 567899999999999999
Q ss_pred HHHHHHhccCCCceEEEEecCCch---HHHHHhcCC-CCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcc---
Q 016375 99 SEQFEALGSGISLRCAVLVGGVDM---MQQTLALGK-RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN--- 171 (390)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~--- 171 (390)
.+.++.++ ..++.+..++|+... ......+.. .++|+|+||+.|.+.+.. +.+.++++||+||+|++..
T Consensus 138 ~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r 213 (1104)
T 4ddu_A 138 LERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASR 213 (1104)
T ss_dssp HHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSH
T ss_pred HHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccc
Confidence 99999987 678899999999876 333444433 499999999999887664 4577899999999997664
Q ss_pred --------cccHHH-HHHHHHhCC-----------CCccEEEEeecC-chhHH-HHHHHhcCCCeEEecCCccccccccc
Q 016375 172 --------DDFEKS-LDEILNVIP-----------RMRQTYLFSATM-TKKVK-KLQRACLKNPVKIEAASKYSTVDTLK 229 (390)
Q Consensus 172 --------~~~~~~-~~~~~~~~~-----------~~~~~i~~saT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (390)
.++... +..++..++ ...|++++|||+ +..+. ........ +...........+.
T Consensus 214 ~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~ 289 (1104)
T 4ddu_A 214 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNIT 289 (1104)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEE
T ss_pred cchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCce
Confidence 344445 677777665 678999999994 43332 22222222 11222222233333
Q ss_pred eeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCcee-eccCCCCHHHHHHHHHHhccCCccEEE
Q 016375 230 QQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAI-PISGHMSQSKRLGALNKFKAGECNILI 308 (390)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~ilv 308 (390)
+.+... .+...+..++.. .+.++||||+++..++.+++.|...++.+. .+|| ++.+ ++.|++|+.+|||
T Consensus 290 ~~~~~~---~k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLV 359 (1104)
T 4ddu_A 290 HVRISS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILI 359 (1104)
T ss_dssp EEEESC---CCHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEE
T ss_pred eEEEec---CHHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEE
Confidence 333333 455566666666 458999999999999999999999999998 9998 2555 9999999999999
Q ss_pred E----eCCCCCCCCCCC-CCEEEEecCCC---------------------------------------------------
Q 016375 309 C----TDVASRGLDIPS-VDMVINYDIPT--------------------------------------------------- 332 (390)
Q Consensus 309 ~----t~~~~~G~d~~~-~~~vi~~~~~~--------------------------------------------------- 332 (390)
| |+++++|+|+|+ +++||+++.|.
T Consensus 360 atas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~ 439 (1104)
T 4ddu_A 360 GVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVE 439 (1104)
T ss_dssp EETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred EecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 9 999999999999 99999999998
Q ss_pred ---------------------CcchhhhccccccCCCCc----ceEEEEeccccHHHHHHHHHHhC
Q 016375 333 ---------------------NSKDYIHRVGRTARAGRT----GVAISLVNQYELEWYLQIEKLIG 373 (390)
Q Consensus 333 ---------------------~~~~~~Q~~GR~~R~~~~----~~~i~~~~~~~~~~~~~~~~~~~ 373 (390)
++..|+||.||+||.|.. |.+++++ ++...+..+++.++
T Consensus 440 ~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 440 KVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred HHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 677899999999997643 4555555 66677777777665
No 31
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.7e-42 Score=335.19 Aligned_cols=324 Identities=22% Similarity=0.251 Sum_probs=222.9
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHH-HHHHHHhccC
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI-SEQFEALGSG 108 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~-~~~~~~~~~~ 108 (390)
.|+++|.++++.+.+++++++.+|||+|||++++++++..+....... .+.++||++|+++|+.|| .++++++...
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~---~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKAS---EPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHT---CCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccC---CCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 799999999999999999999999999999999999988887654311 336799999999999999 9999998765
Q ss_pred CCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhc-----CCCccCCCccEEEEehhhhhcccc-cHHHHHHHH
Q 016375 109 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTN-----TKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEIL 182 (390)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~-----~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~~~ 182 (390)
++.+..++|+.........+...++|+|+||+.|.+.+.+ ...+.+..+++|||||||++.... +...+..++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 4788888888766554444446799999999999988743 223457789999999999876532 333333222
Q ss_pred HhC-------------CCCccEEEEeecCchh--------H---HHHHHHhcC------------------CCeEEecCC
Q 016375 183 NVI-------------PRMRQTYLFSATMTKK--------V---KKLQRACLK------------------NPVKIEAAS 220 (390)
Q Consensus 183 ~~~-------------~~~~~~i~~saT~~~~--------~---~~~~~~~~~------------------~~~~~~~~~ 220 (390)
... .+.++++++||||... . ..+...... .+.......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 211 1456799999999862 1 111111111 111000000
Q ss_pred cccccc--------------------cccee-------------------------------------------------
Q 016375 221 KYSTVD--------------------TLKQQ------------------------------------------------- 231 (390)
Q Consensus 221 ~~~~~~--------------------~~~~~------------------------------------------------- 231 (390)
...... .....
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00000
Q ss_pred ----------------------------E-----------------------EecCCCcchhHHHHHHH----hhC-CCc
Q 016375 232 ----------------------------Y-----------------------RFVPAKYKDCYLVYILT----EVS-ASS 255 (390)
Q Consensus 232 ----------------------------~-----------------------~~~~~~~~~~~~~~~~~----~~~-~~~ 255 (390)
. .......+...+..++. ..+ +.+
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 0 00000111122222332 223 789
Q ss_pred eEEEecchhHHHHHHHHHHhc------CCceeeccCC--------CCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCC
Q 016375 256 TMVFTRTCDATRLLALMLRNL------GQRAIPISGH--------MSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 321 (390)
Q Consensus 256 ~lvf~~~~~~~~~l~~~l~~~------~~~~~~~~~~--------~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~ 321 (390)
+||||+++..++.+++.|.+. |+.+..+||+ ++..+|.++++.|++|+.+|||||+++++|+|+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCcchhhhccccccCCCCcceEEEEecc
Q 016375 322 VDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQ 359 (390)
Q Consensus 322 ~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~ 359 (390)
+++||+++.|+|+..|.||+||++|.| +.++++...
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~ 518 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHS 518 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeC
Confidence 999999999999999999999976654 344444443
No 32
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.9e-42 Score=341.61 Aligned_cols=321 Identities=23% Similarity=0.291 Sum_probs=249.3
Q ss_pred HhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHH
Q 016375 24 ENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (390)
Q Consensus 24 ~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 103 (390)
+.+||. | ++|.++++.+++++++++.+|||+|||. ++++++..+.. .+.++||++|+++|+.|+.+.++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHHHHHHHH
Confidence 458998 9 9999999999999999999999999998 77777766654 46789999999999999999999
Q ss_pred HhccCCCc----eEEEEecCCchHHH---HHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHH
Q 016375 104 ALGSGISL----RCAVLVGGVDMMQQ---TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176 (390)
Q Consensus 104 ~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~ 176 (390)
.++...++ .+..++|+.....+ ...+.. ++|+|+||+.|.+.+.+ ++++++||+||+|++.+ +..
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~--~~~ 192 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILK--ASK 192 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHT--STH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhh--ccc
Confidence 99887777 88999998877653 222334 99999999999987665 55899999999999887 566
Q ss_pred HHHHHHHhCC-----------CCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHH
Q 016375 177 SLDEILNVIP-----------RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLV 245 (390)
Q Consensus 177 ~~~~~~~~~~-----------~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (390)
.+..++..++ ...|.+++|||+++. ......++..+..+...........+.+.+. ...+...+.
T Consensus 193 ~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~ 268 (1054)
T 1gku_B 193 NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLS 268 (1054)
T ss_dssp HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTH
T ss_pred cHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHH
Confidence 7777777663 456789999998876 3222222222211222222222222333222 344555566
Q ss_pred HHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEE----eCCCCCCCCCCC
Q 016375 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILIC----TDVASRGLDIPS 321 (390)
Q Consensus 246 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~----t~~~~~G~d~~~ 321 (390)
.++... +.++||||++++.++.+++.|... +.+..+||++ .++++.|++|+.+|||| |+++++|+|+|+
T Consensus 269 ~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~ 341 (1054)
T 1gku_B 269 SILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPE 341 (1054)
T ss_dssp HHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTT
T ss_pred HHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCC
Confidence 666654 578999999999999999999988 8999999987 47888999999999999 899999999999
Q ss_pred C-CEEEEecCC---------------------------------------------------------------------
Q 016375 322 V-DMVINYDIP--------------------------------------------------------------------- 331 (390)
Q Consensus 322 ~-~~vi~~~~~--------------------------------------------------------------------- 331 (390)
+ ++||+++.|
T Consensus 342 VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (1054)
T 1gku_B 342 RIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEV 421 (1054)
T ss_dssp TCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEE
T ss_pred cccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecce
Confidence 5 999999999
Q ss_pred --CCcchhhhccccccCCCCcc--eEEEEeccccHHHHHHHHHHhCC
Q 016375 332 --TNSKDYIHRVGRTARAGRTG--VAISLVNQYELEWYLQIEKLIGM 374 (390)
Q Consensus 332 --~~~~~~~Q~~GR~~R~~~~~--~~i~~~~~~~~~~~~~~~~~~~~ 374 (390)
.+...|+|++||+||.|..| .+++++...+...+..+++.++.
T Consensus 422 ~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 422 IFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred ecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 68999999999999987765 47888888888888888888774
No 33
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.4e-41 Score=321.26 Aligned_cols=320 Identities=18% Similarity=0.200 Sum_probs=237.5
Q ss_pred HHHHHHHHhcCCCCCchHHHhhHHhHhcC------CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcC
Q 016375 17 DELVEACENVGWKTPSKIQAEAIPHALEG------KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (390)
Q Consensus 17 ~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~------~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 90 (390)
+.+.+.++.+|| +|+++|.++++.+.++ .++++.+|||+|||.+++.+++..+. .+.+++|++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~---------~g~qvlvlaP 425 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE---------AGFQTAFMVP 425 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH---------HTSCEEEECS
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeC
Confidence 455567788999 8999999999998864 48999999999999999999988764 3567999999
Q ss_pred CHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehh
Q 016375 91 TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (390)
Q Consensus 91 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~ 166 (390)
+++|+.|+++.+.++....++++..++|+.....+... ....++|+|+|++.+.+ ...+.++++||+||+
T Consensus 426 tr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 426 TSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQ 499 (780)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESC
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEeccc
Confidence 99999999999999988788999999999876654332 23469999999987754 235778999999999
Q ss_pred hhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHH
Q 016375 167 DRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY 246 (390)
Q Consensus 167 H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (390)
|++.... ...+.......++++|||||.+...............+..... ....+ .....+. .....+..
T Consensus 500 Hr~g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~--~r~~i--~~~~~~~-~~~~~l~~ 569 (780)
T 1gm5_A 500 HRFGVKQ-----REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPP--GRKEV--QTMLVPM-DRVNEVYE 569 (780)
T ss_dssp CCC----------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCS--SCCCC--EECCCCS-STHHHHHH
T ss_pred chhhHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCC--CCcce--EEEEecc-chHHHHHH
Confidence 9753321 1112222345789999999988654433211111111111100 00111 1111222 22333333
Q ss_pred HHHh--hCCCceEEEecch--------hHHHHHHHHHHh---cCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCC
Q 016375 247 ILTE--VSASSTMVFTRTC--------DATRLLALMLRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVA 313 (390)
Q Consensus 247 ~~~~--~~~~~~lvf~~~~--------~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~ 313 (390)
.+.+ ..+.+++|||+.. ..++.+++.|.+ .+..+..+||+++..+|..+++.|++|+.+|||||+++
T Consensus 570 ~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vi 649 (780)
T 1gm5_A 570 FVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVI 649 (780)
T ss_dssp HHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCC
T ss_pred HHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 3332 2577899999965 447788888887 46789999999999999999999999999999999999
Q ss_pred CCCCCCCCCCEEEEecCCC-CcchhhhccccccCCCCcceEEEEeccccH
Q 016375 314 SRGLDIPSVDMVINYDIPT-NSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (390)
Q Consensus 314 ~~G~d~~~~~~vi~~~~~~-~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~ 362 (390)
++|+|+|++++||+++.+. +...+.|++||+||.|++|.|++++++.+.
T Consensus 650 e~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~ 699 (780)
T 1gm5_A 650 EVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGE 699 (780)
T ss_dssp CSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCH
T ss_pred CccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCCh
Confidence 9999999999999999985 678899999999999999999999984333
No 34
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.2e-41 Score=318.66 Aligned_cols=309 Identities=13% Similarity=0.138 Sum_probs=228.7
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCC
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 109 (390)
+|+++|.++++.+.++.++++++|||+|||.+++.++...+.. ...++||++|+++|+.||.+++++++...
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 7999999999999998999999999999999998877766543 34489999999999999999999986665
Q ss_pred CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCc
Q 016375 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189 (390)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~ 189 (390)
+..+..+.++...... .....+|+|+|++.+.+. ....+.++++||+||+|++.. ..+..++..+....
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~ 253 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCC
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCc
Confidence 6788888887665443 345689999999976543 223467799999999998765 34666677777778
Q ss_pred cEEEEeecCchhHHHHHH-HhcCCCeEEecCCcccc----ccc--cceeEEe---------------------cCCCcch
Q 016375 190 QTYLFSATMTKKVKKLQR-ACLKNPVKIEAASKYST----VDT--LKQQYRF---------------------VPAKYKD 241 (390)
Q Consensus 190 ~~i~~saT~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~--~~~~~~~---------------------~~~~~~~ 241 (390)
+++++||||++....... ..+..+..+........ ... ....... .....+.
T Consensus 254 ~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (510)
T 2oca_A 254 FKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRN 333 (510)
T ss_dssp EEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHH
T ss_pred EEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHH
Confidence 899999999765322111 11112222222211000 000 0000000 0011122
Q ss_pred hHHHHHHHhh---CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEe-CCCCCCC
Q 016375 242 CYLVYILTEV---SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICT-DVASRGL 317 (390)
Q Consensus 242 ~~~~~~~~~~---~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t-~~~~~G~ 317 (390)
..+..++... .+.+++||++ ...++.+++.|.+.+.++..+||+++..+|.++++.|++|+.+|||+| +++++|+
T Consensus 334 ~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~Gi 412 (510)
T 2oca_A 334 KWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGI 412 (510)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccc
Confidence 2233333333 3445666666 888999999999988899999999999999999999999999999999 9999999
Q ss_pred CCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEec
Q 016375 318 DIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVN 358 (390)
Q Consensus 318 d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~ 358 (390)
|+|++++||+++.++++..|.|++||+||.|+++.++++++
T Consensus 413 Dip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 413 SVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999999987764444443
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.1e-39 Score=326.53 Aligned_cols=324 Identities=19% Similarity=0.181 Sum_probs=246.8
Q ss_pred cCCCCHHHHHHH-HhcCCCCCchHHHhhHHhHhc----CC--CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCce
Q 016375 12 ELGLRDELVEAC-ENVGWKTPSKIQAEAIPHALE----GK--DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (390)
Q Consensus 12 ~~~~~~~~~~~l-~~~g~~~~~~~Q~~~~~~i~~----~~--~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (390)
.++.+....+.+ ..+|| +++|+|.++++.+.+ ++ ++++++|||+|||.+++.+++..+. .+++
T Consensus 585 ~~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---------~g~~ 654 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---------NHKQ 654 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---------TTCE
T ss_pred CCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---------hCCe
Confidence 345566665544 56899 579999999999886 55 8999999999999998877766542 4668
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCCCccE
Q 016375 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 160 (390)
Q Consensus 85 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~ 160 (390)
++|++|+++|+.||++.+.++....++.+..+++.......... ....++|+|+|++.+.. ...+.++++
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~------~~~~~~l~l 728 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS------DVKFKDLGL 728 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS------CCCCSSEEE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC------Cccccccce
Confidence 99999999999999999998877778888888877655443222 23469999999976532 245788999
Q ss_pred EEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcc
Q 016375 161 LVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYK 240 (390)
Q Consensus 161 iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (390)
||+||+|++.. .....+..++...++++|||||.+...........+...+..... ....+..... ....
T Consensus 729 vIiDEaH~~g~-----~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~--~r~~i~~~~~---~~~~ 798 (1151)
T 2eyq_A 729 LIVDEEHRFGV-----RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--RRLAVKTFVR---EYDS 798 (1151)
T ss_dssp EEEESGGGSCH-----HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC--BCBCEEEEEE---ECCH
T ss_pred EEEechHhcCh-----HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC--CccccEEEEe---cCCH
Confidence 99999997432 334444445566789999999988766655544433332221111 1111111111 1122
Q ss_pred hhHHHHHHHhh-CCCceEEEecchhHHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCC
Q 016375 241 DCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGL 317 (390)
Q Consensus 241 ~~~~~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~ 317 (390)
......++... .+++++|||++++.++.+++.|++. +..+..+||.++..+|.++++.|.+|+++|||||+++++|+
T Consensus 799 ~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 799 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 23333333333 5789999999999999999999987 77899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecC-CCCcchhhhccccccCCCCcceEEEEecccc
Q 016375 318 DIPSVDMVINYDI-PTNSKDYIHRVGRTARAGRTGVAISLVNQYE 361 (390)
Q Consensus 318 d~~~~~~vi~~~~-~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~ 361 (390)
|+|++++||+++. +++...+.|++||+||.|+.|.|++++.+.+
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999999999988 5788999999999999999999999987653
No 36
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.7e-40 Score=323.94 Aligned_cols=313 Identities=19% Similarity=0.211 Sum_probs=238.9
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.++| +|+++|.++++.+.+++++++.+|||+|||+++++++...+. .+.+++|++|+++|+.|+++.+++
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~---------~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR---------NMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH---------TTCEEEEEESCGGGHHHHHHHHHT
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh---------cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4678 599999999999999999999999999999998877765432 567899999999999999999988
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHh
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 184 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~ 184 (390)
... +..+..++|+.... ..++|+|+||+.|.+.+.... ..+.++++||+||+|++.+.+++..+..++..
T Consensus 105 ~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~ 174 (997)
T 4a4z_A 105 TFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGA-DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM 174 (997)
T ss_dssp TC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTC-SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH
T ss_pred HcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCc-hhhcCCCEEEEECcccccccchHHHHHHHHHh
Confidence 654 46777888876532 357999999999998887644 44678999999999998888888888899999
Q ss_pred CCCCccEEEEeecCchhHHHHHHH--hcCCCe-EEecCCcccccc-cc---ce---------------------------
Q 016375 185 IPRMRQTYLFSATMTKKVKKLQRA--CLKNPV-KIEAASKYSTVD-TL---KQ--------------------------- 230 (390)
Q Consensus 185 ~~~~~~~i~~saT~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~-~~---~~--------------------------- 230 (390)
++...+++++|||+++..+..... ...... .+.......... .+ ..
T Consensus 175 l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (997)
T 4a4z_A 175 LPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGES 254 (997)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---
T ss_pred cccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccc
Confidence 999999999999987654321111 111111 111110000000 00 00
Q ss_pred -----------------------------------------------------------eEEecCCCcchhHHHHHHHhh
Q 016375 231 -----------------------------------------------------------QYRFVPAKYKDCYLVYILTEV 251 (390)
Q Consensus 231 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 251 (390)
.....+.......+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~ 334 (997)
T 4a4z_A 255 AKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR 334 (997)
T ss_dssp --------------------------------------------------------------CCCCTTHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC
Confidence 000001122234455666666
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCC---------------------------------------ceeeccCCCCHHHH
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQ---------------------------------------RAIPISGHMSQSKR 292 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~~~~ 292 (390)
...++||||++++.++.+++.|...+. .+..+|+++++.+|
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 778999999999999999999977555 46899999999999
Q ss_pred HHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCC---------CcchhhhccccccCCC--CcceEEEEec
Q 016375 293 LGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT---------NSKDYIHRVGRTARAG--RTGVAISLVN 358 (390)
Q Consensus 293 ~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~---------~~~~~~Q~~GR~~R~~--~~~~~i~~~~ 358 (390)
..+++.|.+|.++|||||+++++|+|+|+ ..||+.+.+. ++.+|.|++||+||.| ..|.|++++.
T Consensus 415 ~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 415 ELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 99999999999999999999999999999 7777766655 9999999999999998 4577888873
No 37
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.3e-40 Score=308.62 Aligned_cols=296 Identities=19% Similarity=0.217 Sum_probs=219.9
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCC
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 109 (390)
.|+|+|.++++.+.+++++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 5899999999999998899999999999999988776542 456999999999999999999885
Q ss_pred Cce-EEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCC
Q 016375 110 SLR-CAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188 (390)
Q Consensus 110 ~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~ 188 (390)
+.. +..++|+... ..+|+|+|++.+....... ..++++||+||+|++.+..+.. +...++ .
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~~-~ 218 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-A 218 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTCC-C
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhcC-C
Confidence 366 7777777643 4789999999987765421 2458999999999988877654 344443 4
Q ss_pred ccEEEEeecCchh-------------------HHHHHHHhcCCCeEEecCCcccc-------------------------
Q 016375 189 RQTYLFSATMTKK-------------------VKKLQRACLKNPVKIEAASKYST------------------------- 224 (390)
Q Consensus 189 ~~~i~~saT~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~------------------------- 224 (390)
.+++++||||... ...+...++..+...........
T Consensus 219 ~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (472)
T 2fwr_A 219 PFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLR 298 (472)
T ss_dssp SEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTT
T ss_pred CeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 5699999999731 22221111111111100000000
Q ss_pred -ccccceeE---------------------EecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceee
Q 016375 225 -VDTLKQQY---------------------RFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 282 (390)
Q Consensus 225 -~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~ 282 (390)
.......+ .......+...+..++....+.++||||++...++.+++.|. +..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 299 RAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp CCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred chhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 00000000 001123344566677777788999999999999999998873 567
Q ss_pred ccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCc---ceEEEEecc
Q 016375 283 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRT---GVAISLVNQ 359 (390)
Q Consensus 283 ~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~---~~~i~~~~~ 359 (390)
+|++++..+|.++++.|++|+++|||+|+++++|+|+|++++||+++.++++..|.|++||++|.|++ ..++.++++
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999854 345556666
Q ss_pred ccHHH
Q 016375 360 YELEW 364 (390)
Q Consensus 360 ~~~~~ 364 (390)
+..+.
T Consensus 454 ~t~ee 458 (472)
T 2fwr_A 454 GTGEV 458 (472)
T ss_dssp SCC--
T ss_pred CCchH
Confidence 55443
No 38
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3e-38 Score=296.66 Aligned_cols=321 Identities=17% Similarity=0.207 Sum_probs=241.6
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+|+ .|+|.|..+++.+.+|+ +..++||+|||+++++|++...+ .++.++|++|++.|+.|.++++..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---------~g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---------TGKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHH
Confidence 5899 99999999999999988 99999999999999999984432 356799999999999999999999
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCC-----CccCCCccEEEEehhhhhc-cc-----
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLL-ND----- 172 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~-----~~~~~~~~~iIiDE~H~~~-~~----- 172 (390)
+...+++++.++.|+.+...+... ..++|+|+||+.| ++++...- ...++.+.++|+||||.++ +.
T Consensus 147 l~~~lgl~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 147 IFEFLGLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHHTTCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HHhhcCCeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 888888999999999876554433 3589999999999 55554431 2456889999999999987 43
Q ss_pred ----------ccHHHHHHHHHhCCC---------CccEE-----------------EEeecCchhHHHHH-----HHhcC
Q 016375 173 ----------DFEKSLDEILNVIPR---------MRQTY-----------------LFSATMTKKVKKLQ-----RACLK 211 (390)
Q Consensus 173 ----------~~~~~~~~~~~~~~~---------~~~~i-----------------~~saT~~~~~~~~~-----~~~~~ 211 (390)
.+...+..+...++. .+|+. ++|||.+.....+. ..++.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 256677788887763 45565 67888653222221 11110
Q ss_pred -CC-eEE-------------------------------------------------------------------------
Q 016375 212 -NP-VKI------------------------------------------------------------------------- 216 (390)
Q Consensus 212 -~~-~~~------------------------------------------------------------------------- 216 (390)
+. +.+
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 00 000
Q ss_pred ---------ecCCccccccccceeEEecCCCcchhHHHHHHHh--hCCCceEEEecchhHHHHHHHHHHhcCCceeeccC
Q 016375 217 ---------EAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 285 (390)
Q Consensus 217 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~ 285 (390)
..+...+....-.....+.....+...+...+.. ..+.++||||++++.++.+++.|...|+++..+|+
T Consensus 385 ~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg 464 (844)
T 1tf5_A 385 RNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNA 464 (844)
T ss_dssp HHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECS
T ss_pred HHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeC
Confidence 0000000000000112233444555556665553 35788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCC--------CCCEEEEecCCCCcchhhhccccccCCCCcceEEEEe
Q 016375 286 HMSQSKRLGALNKFKAGECNILICTDVASRGLDIP--------SVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 357 (390)
Q Consensus 286 ~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~--------~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~ 357 (390)
++...++..+.+.++.| .|+|||+++++|+|++ +..+||.++.|.+...|.|++||+||.|++|.++.|+
T Consensus 465 ~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~v 542 (844)
T 1tf5_A 465 KNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 542 (844)
T ss_dssp SCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEe
Confidence 98877776565556555 6899999999999999 7789999999999999999999999999999999999
Q ss_pred cccc
Q 016375 358 NQYE 361 (390)
Q Consensus 358 ~~~~ 361 (390)
+..+
T Consensus 543 s~eD 546 (844)
T 1tf5_A 543 SMED 546 (844)
T ss_dssp ETTS
T ss_pred cHHH
Confidence 8765
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.1e-37 Score=316.22 Aligned_cols=340 Identities=16% Similarity=0.185 Sum_probs=248.1
Q ss_pred HHHHHHHHhcCCCCCchHHHhhHHhHhc-CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHH
Q 016375 17 DELVEACENVGWKTPSKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELA 95 (390)
Q Consensus 17 ~~~~~~l~~~g~~~~~~~Q~~~~~~i~~-~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 95 (390)
....+.+...+|..++|.|.++++.++. ++++++.+|||||||+++.++++..+.+. ++.++++++|+++|+
T Consensus 913 ~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-------~~~kavyi~P~raLa 985 (1724)
T 4f92_B 913 NSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-------SEGRCVYITPMEALA 985 (1724)
T ss_dssp CHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-------TTCCEEEECSCHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-------CCCEEEEEcChHHHH
Confidence 4445566667899999999999999976 46899999999999999999999888763 456799999999999
Q ss_pred HHHHHHHHH-hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCc-cCCCccEEEEehhhhhcccc
Q 016375 96 IQISEQFEA-LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLNDD 173 (390)
Q Consensus 96 ~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~-~~~~~~~iIiDE~H~~~~~~ 173 (390)
.|.++++.+ ++...+.++..++|+.....+.. ..++|+|+||+++...+.+.... .++++++||+||+|.+.+ .
T Consensus 986 ~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~---~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~ 1061 (1724)
T 4f92_B 986 EQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLL---GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-E 1061 (1724)
T ss_dssp HHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHH---HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-T
T ss_pred HHHHHHHHHHhchhcCCEEEEEECCCCcchhhc---CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-C
Confidence 999999875 56667899999998876544332 34799999999997777654322 367899999999997655 3
Q ss_pred cHHHHHHHH-------HhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcch-----
Q 016375 174 FEKSLDEIL-------NVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD----- 241 (390)
Q Consensus 174 ~~~~~~~~~-------~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 241 (390)
.+..+..++ ...+...|++++|||.++..+-..+........+......... .+.......+.....
T Consensus 1062 rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPv-pL~~~i~~~~~~~~~~~~~~ 1140 (1724)
T 4f92_B 1062 NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPV-PLELHIQGFNISHTQTRLLS 1140 (1724)
T ss_dssp THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSS-CEEEEEEEECCCSHHHHHHT
T ss_pred CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCC-CeEEEEEeccCCCchhhhhh
Confidence 444444333 3456678999999999874443333333322333222222111 122222222222111
Q ss_pred ---hHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhc----------------------------------CCceeecc
Q 016375 242 ---CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL----------------------------------GQRAIPIS 284 (390)
Q Consensus 242 ---~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----------------------------------~~~~~~~~ 284 (390)
.....+.+...+++++|||++++.++.++..|... ...+..+|
T Consensus 1141 ~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hH 1220 (1724)
T 4f92_B 1141 MAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLH 1220 (1724)
T ss_dssp THHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEEC
T ss_pred hcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEEC
Confidence 11222333446789999999999998887666421 12367899
Q ss_pred CCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEE----ec------CCCCcchhhhccccccCCCC--cce
Q 016375 285 GHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----YD------IPTNSKDYIHRVGRTARAGR--TGV 352 (390)
Q Consensus 285 ~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~----~~------~~~~~~~~~Q~~GR~~R~~~--~~~ 352 (390)
+++++.+|..+.+.|++|.++||+||+.+..|+|+|...+||. ++ .+.++.+|.|++||+||.|. .|.
T Consensus 1221 agL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~ 1300 (1724)
T 4f92_B 1221 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGR 1300 (1724)
T ss_dssp TTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceE
Confidence 9999999999999999999999999999999999998777763 21 24688899999999999986 589
Q ss_pred EEEEeccccHHHHHHH
Q 016375 353 AISLVNQYELEWYLQI 368 (390)
Q Consensus 353 ~i~~~~~~~~~~~~~~ 368 (390)
|++++.+.+.+.+..+
T Consensus 1301 avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1301 CVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEEEEGGGHHHHHHH
T ss_pred EEEEecchHHHHHHHH
Confidence 9999988877665443
No 40
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=7e-38 Score=309.74 Aligned_cols=332 Identities=18% Similarity=0.147 Sum_probs=227.9
Q ss_pred CCchHHHhhHHhHhcC--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhcc
Q 016375 30 TPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 107 (390)
.|+|||.+++..+... .++++.++||+|||++++..+...+..+ ..+++||+||+ +|+.||.+++.++.
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 5899999999998864 4799999999999999876665544321 34579999999 99999999997765
Q ss_pred CCCceEEEEecCCchHHHHH--hcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccH--HHHHHHHH
Q 016375 108 GISLRCAVLVGGVDMMQQTL--ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE--KSLDEILN 183 (390)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~--~~~~~~~~ 183 (390)
+..+..+.++........ ......+|+|+|++.+.+.......+...++++||+||+|++.+.... .....+..
T Consensus 224 --~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~ 301 (968)
T 3dmq_A 224 --NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQ 301 (968)
T ss_dssp --CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHH
T ss_pred --CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHH
Confidence 355556655443222111 122367999999998865432222233567999999999988653321 12223333
Q ss_pred hCCCCccEEEEeecCchh-H---HHHHHH----------------------------hcCC-C-----------------
Q 016375 184 VIPRMRQTYLFSATMTKK-V---KKLQRA----------------------------CLKN-P----------------- 213 (390)
Q Consensus 184 ~~~~~~~~i~~saT~~~~-~---~~~~~~----------------------------~~~~-~----------------- 213 (390)
.....++++++||||.++ . ...... .... +
T Consensus 302 L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~ 381 (968)
T 3dmq_A 302 LAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381 (968)
T ss_dssp HHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTC
T ss_pred HhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchh
Confidence 333445699999998531 0 000000 0000 0
Q ss_pred ----------------------------------eEEecCC-cccccc--ccce--------------------------
Q 016375 214 ----------------------------------VKIEAAS-KYSTVD--TLKQ-------------------------- 230 (390)
Q Consensus 214 ----------------------------------~~~~~~~-~~~~~~--~~~~-------------------------- 230 (390)
..+.... ...... ....
T Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp SSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred hHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 0000000 000000 0000
Q ss_pred -------------------eEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHh-cCCceeeccCCCCHH
Q 016375 231 -------------------QYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRN-LGQRAIPISGHMSQS 290 (390)
Q Consensus 231 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~ 290 (390)
.........+...+..++....+.+++|||+++..++.+++.|.+ .|+++..+||+++..
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 001122334556677777777899999999999999999999995 599999999999999
Q ss_pred HHHHHHHHhccCC--ccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHH
Q 016375 291 KRLGALNKFKAGE--CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (390)
Q Consensus 291 ~~~~~~~~f~~~~--~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~ 368 (390)
+|..+++.|++|+ ++|||+|+++++|+|+|++++||+++.|+++..|.|++||++|.|+.+.|+++....+...-..+
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i 621 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVL 621 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHH
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHH
Confidence 9999999999998 99999999999999999999999999999999999999999999988866665443333223334
Q ss_pred HHHh
Q 016375 369 EKLI 372 (390)
Q Consensus 369 ~~~~ 372 (390)
.+.+
T Consensus 622 ~~~~ 625 (968)
T 3dmq_A 622 VRWY 625 (968)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3433
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.8e-37 Score=318.86 Aligned_cols=336 Identities=20% Similarity=0.268 Sum_probs=240.9
Q ss_pred CCCCCchHHHhhHHhHhc-CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCC--CCCCceEEEEcCCHHHHHHHHHHHH
Q 016375 27 GWKTPSKIQAEAIPHALE-GKDLIGLAQTGSGKTGAFALPILQALLEIAENQR--TVPAFFACVLSPTRELAIQISEQFE 103 (390)
Q Consensus 27 g~~~~~~~Q~~~~~~i~~-~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~--~~~~~~~lil~P~~~l~~q~~~~~~ 103 (390)
||..|++.|.++++.++. +++++++||||+|||+++.++++..+.+...... ...+.++++++|+++|+.|..+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999998875 6799999999999999999999998876432211 2357789999999999999999998
Q ss_pred HhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCC-ccCCCccEEEEehhhhhcccccHHHHHHHH
Q 016375 104 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLDEADRLLNDDFEKSLDEIL 182 (390)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~-~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~ 182 (390)
+.....++.+..++|+....... ...++|+|+||+++...+.+... ..++++++||+||+|.+.+ .-+..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 87778889999999987654332 23589999999998666554332 1267899999999995544 4444444443
Q ss_pred H-------hCCCCccEEEEeecCchhHHHHHHHhcCCC--eEEecCCccccccccceeEEecCCCcch-------hHHHH
Q 016375 183 N-------VIPRMRQTYLFSATMTKKVKKLQRACLKNP--VKIEAASKYSTVDTLKQQYRFVPAKYKD-------CYLVY 246 (390)
Q Consensus 183 ~-------~~~~~~~~i~~saT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 246 (390)
. ..+...|++++|||.++. +++.+-....+ .......... ...+.+.+......... ..+..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~~~~R-PvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFDNSFR-PVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECCGGGC-SSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEECCCCc-cCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 2 346677899999998763 33333221111 0111111111 11122222222222111 11111
Q ss_pred -HHHhhCCCceEEEecchhHHHHHHHHHHhc-------------------------------------CCceeeccCCCC
Q 016375 247 -ILTEVSASSTMVFTRTCDATRLLALMLRNL-------------------------------------GQRAIPISGHMS 288 (390)
Q Consensus 247 -~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~ 288 (390)
+.....++++||||++++.++.+++.|.+. ...+..+|++++
T Consensus 310 ~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 310 KIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 122235678999999999988888777531 112678899999
Q ss_pred HHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEE----ec------CCCCcchhhhccccccCCCC--cceEEEE
Q 016375 289 QSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----YD------IPTNSKDYIHRVGRTARAGR--TGVAISL 356 (390)
Q Consensus 289 ~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~----~~------~~~~~~~~~Q~~GR~~R~~~--~~~~i~~ 356 (390)
..+|..+.+.|++|.++||+||+.+..|+|+|..++||. ++ .+.++.+|.|++|||||.|. .|.++++
T Consensus 390 ~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 390 RVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp THHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999998888874 33 34688899999999999874 5889999
Q ss_pred eccccHHHHHHH
Q 016375 357 VNQYELEWYLQI 368 (390)
Q Consensus 357 ~~~~~~~~~~~~ 368 (390)
..+.+...+..+
T Consensus 470 ~~~~~~~~~~~l 481 (1724)
T 4f92_B 470 TSHGELQYYLSL 481 (1724)
T ss_dssp EESTTCCHHHHH
T ss_pred ecchhHHHHHHH
Confidence 888776655443
No 42
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.1e-36 Score=285.29 Aligned_cols=322 Identities=18% Similarity=0.176 Sum_probs=223.4
Q ss_pred HhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHH
Q 016375 24 ENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (390)
Q Consensus 24 ~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 103 (390)
+.+|+ .|++.|..+++.+.+|+ +..++||+|||+++++|++.... .++.++|++||+.|+.|.++.+.
T Consensus 69 R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---------~g~~vlVltPTreLA~Q~~e~~~ 136 (853)
T 2fsf_A 69 RVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---------TGKGVHVVTVNDYLAQRDAENNR 136 (853)
T ss_dssp HHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---------TSSCCEEEESSHHHHHHHHHHHH
T ss_pred HHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---------cCCcEEEEcCCHHHHHHHHHHHH
Confidence 34787 89999999999999987 99999999999999999985442 35679999999999999999999
Q ss_pred HhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCC-----CccCCCccEEEEehhhhhcc-c----
Q 016375 104 ALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLN-D---- 172 (390)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~-----~~~~~~~~~iIiDE~H~~~~-~---- 172 (390)
.+...+++++.++.|+.+...+... ..++|+|+||+.| ++++...- ...++.+.++|+||+|+++. .
T Consensus 137 ~l~~~lgl~v~~i~GG~~~~~r~~~--~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tp 214 (853)
T 2fsf_A 137 PLFEFLGLTVGINLPGMPAPAKREA--YAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTP 214 (853)
T ss_dssp HHHHHTTCCEEECCTTCCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCE
T ss_pred HHHHhcCCeEEEEeCCCCHHHHHHh--cCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccc
Confidence 9988888999999999876544332 3589999999999 67766542 13468899999999999883 2
Q ss_pred -----------ccHHHHHHHHHhCCC--------------------CccEE------------------------EEeec
Q 016375 173 -----------DFEKSLDEILNVIPR--------------------MRQTY------------------------LFSAT 197 (390)
Q Consensus 173 -----------~~~~~~~~~~~~~~~--------------------~~~~i------------------------~~saT 197 (390)
.+...+..+...++. .+++. ++|||
T Consensus 215 LIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat 294 (853)
T 2fsf_A 215 LIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPA 294 (853)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred ccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcc
Confidence 234455566665553 23332 67777
Q ss_pred CchhHHHHH-----HHhcC---------------------------------CC----eEEecCCcccccccc-------
Q 016375 198 MTKKVKKLQ-----RACLK---------------------------------NP----VKIEAASKYSTVDTL------- 228 (390)
Q Consensus 198 ~~~~~~~~~-----~~~~~---------------------------------~~----~~~~~~~~~~~~~~~------- 228 (390)
.+.....+. ..++. .+ ..+....+......+
T Consensus 295 ~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr 374 (853)
T 2fsf_A 295 NIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFR 374 (853)
T ss_dssp --------------------------------------------------------------CCCCCEEEEEEEHHHHHT
T ss_pred cchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHh
Confidence 543111110 00000 00 000000000000000
Q ss_pred ----------------------------------------ceeEEecCCCcchhHHHHHHHh--hCCCceEEEecchhHH
Q 016375 229 ----------------------------------------KQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDAT 266 (390)
Q Consensus 229 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvf~~~~~~~ 266 (390)
.....+.....+...+...+.. ..+.++||||++++.+
T Consensus 375 ~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~s 454 (853)
T 2fsf_A 375 LYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKS 454 (853)
T ss_dssp TSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHH
T ss_pred hhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHH
Confidence 0112334445555666666644 3578999999999999
Q ss_pred HHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC------------------------
Q 016375 267 RLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV------------------------ 322 (390)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~------------------------ 322 (390)
+.+++.|++.|+++.++|+.....++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 455 e~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~ 532 (853)
T 2fsf_A 455 ELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD 532 (853)
T ss_dssp HHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHH
Confidence 999999999999999999998888888888888888 599999999999999863
Q ss_pred -------------CEEEEecCCCCcchhhhccccccCCCCcceEEEEecccc
Q 016375 323 -------------DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYE 361 (390)
Q Consensus 323 -------------~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~ 361 (390)
.+||.++.|.|...|.|+.||+||.|.+|.++.|++..+
T Consensus 533 ~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 533 WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 589999999999999999999999999999999998766
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.9e-39 Score=302.01 Aligned_cols=314 Identities=16% Similarity=0.138 Sum_probs=225.3
Q ss_pred CCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCH
Q 016375 13 LGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (390)
Q Consensus 13 ~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 92 (390)
+++++.+.+.+... ...+.|.|..+++.+.+++++++.+|||||||++++++++..+.. .+.++||++|++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl~Ptr 225 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLILAPTR 225 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEcChH
Confidence 44555555444433 356777777789999999999999999999999999999988765 456899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccc
Q 016375 93 ELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND 172 (390)
Q Consensus 93 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~ 172 (390)
+|+.|+.+.++. ..+. +.+.... ........+.++|.+.+.+.+... ..+.++++||+||+|++ +.
T Consensus 226 eLa~Qi~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~ 291 (618)
T 2whx_A 226 VVAAEMEEALRG------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DP 291 (618)
T ss_dssp HHHHHHHHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-SH
T ss_pred HHHHHHHHHhcC------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-Cc
Confidence 999999988763 2222 2221100 011223567778888887766654 24788999999999987 54
Q ss_pred ccHHHHHHHHHhCC-CCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhh
Q 016375 173 DFEKSLDEILNVIP-RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV 251 (390)
Q Consensus 173 ~~~~~~~~~~~~~~-~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (390)
.+...+..+...++ ...|++++|||++.....+.. ..+..+...... +...... +...+.+
T Consensus 292 ~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~-------------~~~~~~~-ll~~l~~- 353 (618)
T 2whx_A 292 CSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI-------------PERSWNT-GFDWITD- 353 (618)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-------------CSSCCSS-SCHHHHH-
T ss_pred cHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC-------------CHHHHHH-HHHHHHh-
Confidence 55556666665554 567899999999875432211 122222111111 1111111 1222222
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEE------
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV------ 325 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~v------ 325 (390)
...++||||++++.++.+++.|.+.+.++..+|+. +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 36799999999999999999999999999999984 678899999999999999999999999997 8888
Q ss_pred --------------EEecCCCCcchhhhccccccCCCC-cceEEEEec---cccHHHHHHHHHHh
Q 016375 326 --------------INYDIPTNSKDYIHRVGRTARAGR-TGVAISLVN---QYELEWYLQIEKLI 372 (390)
Q Consensus 326 --------------i~~~~~~~~~~~~Q~~GR~~R~~~-~~~~i~~~~---~~~~~~~~~~~~~~ 372 (390)
++++.|.+..+|.||+||+||.|. +|.|++|+. +.+...+..+++.+
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 666778999999999999999964 899999997 77777777777654
No 44
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=6.4e-36 Score=280.52 Aligned_cols=322 Identities=17% Similarity=0.195 Sum_probs=244.9
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+|+ .|++.|..+++.+.+|+ +..++||+|||+++.+|++...+ .++.++|++|++.|+.|.++.+..
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---------~g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---------AGNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---------TTSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---------hCCCeEEEeCCHHHHHHHHHHHHH
Confidence 4799 89999999999999887 99999999999999999975443 355799999999999999999999
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCC-----CccCCCccEEEEehhhhhccc------
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLND------ 172 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~-----~~~~~~~~~iIiDE~H~~~~~------ 172 (390)
+...+++++.++.|+.+...+.... .++|+++||..| ++++...- ...++.+.++||||+|.++.+
T Consensus 175 l~~~lGLsv~~i~gg~~~~~r~~~y--~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 175 VHRFLGLQVGVILATMTPDERRVAY--NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp HHHHTTCCEEECCTTCCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred HHhhcCCeEEEEeCCCCHHHHHHhc--CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 8888889999999988765444333 589999999999 66666532 245678999999999998732
Q ss_pred ----------ccHHHHHHHHHhCC---------CCccEE-----------------EEeecCchhHHHHHH-----HhcC
Q 016375 173 ----------DFEKSLDEILNVIP---------RMRQTY-----------------LFSATMTKKVKKLQR-----ACLK 211 (390)
Q Consensus 173 ----------~~~~~~~~~~~~~~---------~~~~~i-----------------~~saT~~~~~~~~~~-----~~~~ 211 (390)
++...+..+...++ +.+++. ++|||.+.....+.. .++.
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 36678888888887 556676 778987653332211 1111
Q ss_pred -CC-eEEe------cC-----------------------------Cccccccc---------------------------
Q 016375 212 -NP-VKIE------AA-----------------------------SKYSTVDT--------------------------- 227 (390)
Q Consensus 212 -~~-~~~~------~~-----------------------------~~~~~~~~--------------------------- 227 (390)
+. +.+. .. .+......
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 10 0000 00 00000000
Q ss_pred -----------------c---ceeEEecCCCcchhHHHHHHHh--hCCCceEEEecchhHHHHHHHHHHhcCCceeeccC
Q 016375 228 -----------------L---KQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 285 (390)
Q Consensus 228 -----------------~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~ 285 (390)
. .....+.....+...+...+.+ ..+.++||||++++.++.+++.|.+.|+++.++|+
T Consensus 413 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLna 492 (922)
T 1nkt_A 413 HEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNA 492 (922)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECS
T ss_pred HHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecC
Confidence 0 0012233334455555555543 35779999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC-------------------------------------------
Q 016375 286 HMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV------------------------------------------- 322 (390)
Q Consensus 286 ~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~------------------------------------------- 322 (390)
.....++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 493 k~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (922)
T 1nkt_A 493 KYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKE 570 (922)
T ss_dssp SCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHh
Confidence 98777777777788777 589999999999999864
Q ss_pred ---------CEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccH
Q 016375 323 ---------DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 362 (390)
Q Consensus 323 ---------~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~ 362 (390)
.+||.++.|.|...|.|+.||+||.|.+|.++.|++..+.
T Consensus 571 ~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 571 AKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4899999999999999999999999999999999987664
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=6.3e-38 Score=286.94 Aligned_cols=287 Identities=19% Similarity=0.167 Sum_probs=207.9
Q ss_pred CCCCCchHHHhhHHhHhcCCCE-EEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 27 GWKTPSKIQAEAIPHALEGKDL-IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 27 g~~~~~~~Q~~~~~~i~~~~~~-li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
|+.++.|.|. +++.++++++. ++.+|||||||.+++++++..+.. .+.++||++|+++|+.|+.+.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRG- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTT-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcC-
Confidence 6778899985 78888887776 999999999999988898877665 467899999999999999988752
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHH-Hh
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL-NV 184 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~-~~ 184 (390)
..+......... .......+.++|++.+.+.+.+. ..+.++++||+||+|++ +..+......+. ..
T Consensus 71 -----~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~ 137 (451)
T 2jlq_A 71 -----LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV 137 (451)
T ss_dssp -----SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHH
T ss_pred -----ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHhh
Confidence 222211111110 12234678999999998877654 34778999999999966 322222222222 12
Q ss_pred CCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecchh
Q 016375 185 IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCD 264 (390)
Q Consensus 185 ~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~ 264 (390)
.....++++||||+++..... ....+..+...... +... ...+...+.+ ..+++||||++++
T Consensus 138 ~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~-------------p~~~-~~~~~~~l~~-~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREI-------------PERS-WNTGFDWITD-YQGKTVWFVPSIK 199 (451)
T ss_dssp HTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCC-------------CSSC-CSSSCHHHHH-CCSCEEEECSSHH
T ss_pred cCCCceEEEEccCCCccchhh---hcCCCceEecCccC-------------Cchh-hHHHHHHHHh-CCCCEEEEcCCHH
Confidence 344678999999997743221 11222222111110 0000 0001122222 3669999999999
Q ss_pred HHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEec---------------
Q 016375 265 ATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD--------------- 329 (390)
Q Consensus 265 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~--------------- 329 (390)
.++.+++.|++.+..+..+|+.+. ..+++.|++|+.+|||||+++++|+|+|+ +.||+++
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999998643 57899999999999999999999999999 9999988
Q ss_pred -----CCCCcchhhhccccccCCCC-cceEEEEecc
Q 016375 330 -----IPTNSKDYIHRVGRTARAGR-TGVAISLVNQ 359 (390)
Q Consensus 330 -----~~~~~~~~~Q~~GR~~R~~~-~~~~i~~~~~ 359 (390)
.|.+..+|.||+||+||.|+ +|.|++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 88999999999999999997 7888888753
No 46
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=4e-37 Score=292.41 Aligned_cols=313 Identities=19% Similarity=0.209 Sum_probs=188.8
Q ss_pred CCchHHHhhHHhHhc----C-CCEEEEcCCCCchhHHhHHHHHHHHHHHH-hcCCCCCCceEEEEcCCHHHHHHHH-HHH
Q 016375 30 TPSKIQAEAIPHALE----G-KDLIGLAQTGSGKTGAFALPILQALLEIA-ENQRTVPAFFACVLSPTRELAIQIS-EQF 102 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~----~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~-~~~~~~~~~~~lil~P~~~l~~q~~-~~~ 102 (390)
.|+++|.++++.+.+ + +++++.+|||+|||++++. ++..+.+.. .......++++||++|+++|+.||. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998875 4 5689999999999998654 444443321 1111224678999999999999999 777
Q ss_pred HHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCC---CccCCCccEEEEehhhhhcccccHHHHH
Q 016375 103 EALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTK---GFSLGTLKYLVLDEADRLLNDDFEKSLD 179 (390)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~---~~~~~~~~~iIiDE~H~~~~~~~~~~~~ 179 (390)
+.++. .+..+.++ ......+|+|+|++.|........ .+....+++||+||||++.... ...+.
T Consensus 257 ~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 76653 23332222 123468999999999988654221 2345678999999999886642 23455
Q ss_pred HHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCc-----------------ccccccc-------ceeEE--
Q 016375 180 EILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK-----------------YSTVDTL-------KQQYR-- 233 (390)
Q Consensus 180 ~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~-------~~~~~-- 233 (390)
.++..++. .+++++||||...........+..+........ ....... .....
T Consensus 324 ~il~~~~~-~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFEP-AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHSTT-SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCCc-ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 66666654 459999999986443333333332221100000 0000000 00000
Q ss_pred ----ecCC--------CcchhH----HHHHHHh-hCCCceEEEecchhHHHHHHHHHHhcCCc--------eeeccCCCC
Q 016375 234 ----FVPA--------KYKDCY----LVYILTE-VSASSTMVFTRTCDATRLLALMLRNLGQR--------AIPISGHMS 288 (390)
Q Consensus 234 ----~~~~--------~~~~~~----~~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~--------~~~~~~~~~ 288 (390)
.... ..+... +...+.. ....++||||+++..++.+++.|.+.+.. +..+||.++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 0000 000111 2222232 24589999999999999999999876432 667888765
Q ss_pred HHHHHHHHHHhccCCcc---EEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCC--cceEEEEec
Q 016375 289 QSKRLGALNKFKAGECN---ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR--TGVAISLVN 358 (390)
Q Consensus 289 ~~~~~~~~~~f~~~~~~---ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~--~~~~i~~~~ 358 (390)
. +|.++++.|++|+.+ |+++|+++++|+|+|++++||+++.++++..|.|++||++|.++ .+..+++++
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 3 689999999998755 88889999999999999999999999999999999999999875 333333443
No 47
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=6.4e-36 Score=279.13 Aligned_cols=311 Identities=17% Similarity=0.186 Sum_probs=213.9
Q ss_pred CCchHHHhhHHhHh----cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 30 TPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.|+|||.++++++. .+.++++.++||+|||++++..+.. +.... ...++||+|| .+|+.||.++++++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~~~------~~~~~LIv~P-~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKEN------ELTPSLVICP-LSVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHHTT------CCSSEEEEEC-STTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHhcC------CCCCEEEEcc-HHHHHHHHHHHHHH
Confidence 59999999998874 4678999999999999987554433 32211 4567999999 56889999999999
Q ss_pred ccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhC
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 185 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~ 185 (390)
... ..+..++|+... ......+|+|+|++.+.+... +....+++||+||+|++.+... .....+..+
T Consensus 109 ~~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l 175 (500)
T 1z63_A 109 APH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKEL 175 (500)
T ss_dssp CTT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTS
T ss_pred CCC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhH--HHHHHHHhh
Confidence 764 566666666532 112357999999998865433 2345689999999998866442 233334444
Q ss_pred CCCccEEEEeecCchh-HHHHH------------------------------------HHhcCCCeEEecCCcc----cc
Q 016375 186 PRMRQTYLFSATMTKK-VKKLQ------------------------------------RACLKNPVKIEAASKY----ST 224 (390)
Q Consensus 186 ~~~~~~i~~saT~~~~-~~~~~------------------------------------~~~~~~~~~~~~~~~~----~~ 224 (390)
+. .+.+++||||..+ ..++. ...+ .+..++..... ..
T Consensus 176 ~~-~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~ 253 (500)
T 1z63_A 176 KS-KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIIND 253 (500)
T ss_dssp CE-EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTT
T ss_pred cc-CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhc
Confidence 43 4689999999542 11110 1111 11222111100 00
Q ss_pred ccccceeEEec---------------------------------------------------------CCCcchhHHHHH
Q 016375 225 VDTLKQQYRFV---------------------------------------------------------PAKYKDCYLVYI 247 (390)
Q Consensus 225 ~~~~~~~~~~~---------------------------------------------------------~~~~~~~~~~~~ 247 (390)
.+........+ ....+...+..+
T Consensus 254 lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~ 333 (500)
T 1z63_A 254 LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEI 333 (500)
T ss_dssp SCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHH
Confidence 00000000111 112223333444
Q ss_pred HHhh--CCCceEEEecchhHHHHHHHHHHhc-CCceeeccCCCCHHHHHHHHHHhccC-Ccc-EEEEeCCCCCCCCCCCC
Q 016375 248 LTEV--SASSTMVFTRTCDATRLLALMLRNL-GQRAIPISGHMSQSKRLGALNKFKAG-ECN-ILICTDVASRGLDIPSV 322 (390)
Q Consensus 248 ~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~-ilv~t~~~~~G~d~~~~ 322 (390)
+.+. .+.+++|||++...++.+.+.|... +..+..++|.++..+|.++++.|+++ ... +|++|.++++|+|++.+
T Consensus 334 l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~ 413 (500)
T 1z63_A 334 IEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 413 (500)
T ss_dssp HHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTC
T ss_pred HHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhC
Confidence 4443 5789999999999999999999985 89999999999999999999999998 555 78899999999999999
Q ss_pred CEEEEecCCCCcchhhhccccccCCCCcceE--EEEeccccHH
Q 016375 323 DMVINYDIPTNSKDYIHRVGRTARAGRTGVA--ISLVNQYELE 363 (390)
Q Consensus 323 ~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~--i~~~~~~~~~ 363 (390)
++||+++++|++..+.|++||++|.|+++.| +.++..+..+
T Consensus 414 ~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 414 NRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp SEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred CEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 9999999999999999999999999977655 5566666554
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.4e-38 Score=288.34 Aligned_cols=278 Identities=17% Similarity=0.207 Sum_probs=190.7
Q ss_pred hHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCC
Q 016375 41 HALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 120 (390)
Q Consensus 41 ~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 120 (390)
.+.+++++++.+|||||||++++++++..+.. .+.+++|++|+++|+.|+++.++.+. +....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~~------v~~~~~~~ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGLD------VKFHTQAF 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTSC------EEEESSCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcCC------eEEecccc
Confidence 45678999999999999999998888887765 45689999999999999999887432 22111110
Q ss_pred chHHHHHhcCCCCCEEEeCCchh---------HHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhC-CCCcc
Q 016375 121 DMMQQTLALGKRPHIVVATPGRL---------MDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI-PRMRQ 190 (390)
Q Consensus 121 ~~~~~~~~~~~~~~i~i~t~~~l---------~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~-~~~~~ 190 (390)
. .++|++.+ ...+.+. ..+.++++||+||+|++ +..+...+..+.... +...+
T Consensus 70 ~--------------~v~Tp~~l~~~l~~~~l~~~~~~~--~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~ 132 (440)
T 1yks_A 70 S--------------AHGSGREVIDAMCHATLTYRMLEP--TRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESA 132 (440)
T ss_dssp C--------------CCCCSSCCEEEEEHHHHHHHHTSS--SCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCE
T ss_pred e--------------eccCCccceeeecccchhHhhhCc--ccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCce
Confidence 0 24555433 2222221 24678999999999987 322222222222222 35678
Q ss_pred EEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHH
Q 016375 191 TYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLA 270 (390)
Q Consensus 191 ~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~ 270 (390)
+++||||+++....+... ..+.. ......+.......+..+.. .+.+++|||++++.++.++
T Consensus 133 ~l~~SAT~~~~~~~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~ 194 (440)
T 1yks_A 133 TILMTATPPGTSDEFPHS--NGEIE--------------DVQTDIPSEPWNTGHDWILA--DKRPTAWFLPSIRAANVMA 194 (440)
T ss_dssp EEEECSSCTTCCCSSCCC--SSCEE--------------EEECCCCSSCCSSSCHHHHH--CCSCEEEECSCHHHHHHHH
T ss_pred EEEEeCCCCchhhhhhhc--CCCee--------------EeeeccChHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHH
Confidence 999999998754322111 00100 00011111111222222222 3679999999999999999
Q ss_pred HHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEE-------------------ecCC
Q 016375 271 LMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN-------------------YDIP 331 (390)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~-------------------~~~~ 331 (390)
+.|++.+.++..+|| .+|.++++.|++|+.+|||||+++++|+|+| ++.||+ ++.|
T Consensus 195 ~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p 269 (440)
T 1yks_A 195 ASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLR 269 (440)
T ss_dssp HHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccc
Confidence 999999999999999 3578899999999999999999999999999 999986 7889
Q ss_pred CCcchhhhccccccCC-CCcceEEEEe---ccccHHHHHHHHHHh
Q 016375 332 TNSKDYIHRVGRTARA-GRTGVAISLV---NQYELEWYLQIEKLI 372 (390)
Q Consensus 332 ~~~~~~~Q~~GR~~R~-~~~~~~i~~~---~~~~~~~~~~~~~~~ 372 (390)
.+..+|.|++||+||. +++|.|++++ ++.+...+..+++.+
T Consensus 270 ~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 270 ISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 9999999999999998 6889999996 677777777777655
No 49
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=7.1e-37 Score=294.89 Aligned_cols=336 Identities=16% Similarity=0.200 Sum_probs=238.8
Q ss_pred ccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHh-cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCC
Q 016375 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHAL-EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~-~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~ 82 (390)
..++.+|.++++++.+.+.++..+ ..|.+.|++.+..+. .++++++.+|||+|||+. +|++ +...... ...+
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~l--l~~~~~~--~~~g 140 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQF--VLFDEMP--HLEN 140 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHH--HHHHHCG--GGGT
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHH--HHHhccc--cCCC
Confidence 345788999999999999999988 467777877776666 456899999999999983 3443 1111100 0125
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHhc-cCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEE
Q 016375 83 FFACVLSPTRELAIQISEQFEALG-SGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (390)
Q Consensus 83 ~~~lil~P~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~i 161 (390)
.++++++|++.++.|+++.+.... ...+..+....... ......++|+++|++.+.+.+... ..+.++++|
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~------~~~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~l 212 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFE------NKTSNKTILKYMTDGMLLREAMED--HDLSRYSCI 212 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTE------EECCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEE
T ss_pred ceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccc------cccCCCCCEEEECHHHHHHHHhhC--ccccCCCEE
Confidence 679999999999999988775543 22222221111100 112246899999999999877664 347889999
Q ss_pred EEehhhh-hcccc-cHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCc
Q 016375 162 VLDEADR-LLNDD-FEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY 239 (390)
Q Consensus 162 IiDE~H~-~~~~~-~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (390)
|+||+|. ..+.+ ....+..+.... +..+++++|||+.. ..+.. ++.....+....... .+...+...+...
T Consensus 213 IlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~~---pv~~~~~~~~~~~ 285 (773)
T 2xau_A 213 ILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRTY---PVELYYTPEFQRD 285 (773)
T ss_dssp EECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCCC---CEEEECCSSCCSC
T ss_pred EecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHHH-HhcCCCcccccCccc---ceEEEEecCCchh
Confidence 9999995 44422 233444454444 35679999999964 33333 344333333332221 1222222222222
Q ss_pred chh----HHHHHHHhhCCCceEEEecchhHHHHHHHHHHh-----------cCCceeeccCCCCHHHHHHHHHHhc----
Q 016375 240 KDC----YLVYILTEVSASSTMVFTRTCDATRLLALMLRN-----------LGQRAIPISGHMSQSKRLGALNKFK---- 300 (390)
Q Consensus 240 ~~~----~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~f~---- 300 (390)
... .+..+.....++++||||+++.+++.+++.|.+ .+..+..+||+++..+|..+++.|.
T Consensus 286 ~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~ 365 (773)
T 2xau_A 286 YLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN 365 (773)
T ss_dssp HHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccC
Confidence 221 222233334688999999999999999999985 4678999999999999999999999
Q ss_pred -cCCccEEEEeCCCCCCCCCCCCCEEEEecC------------------CCCcchhhhccccccCCCCcceEEEEecccc
Q 016375 301 -AGECNILICTDVASRGLDIPSVDMVINYDI------------------PTNSKDYIHRVGRTARAGRTGVAISLVNQYE 361 (390)
Q Consensus 301 -~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~ 361 (390)
+|..+|||||+++++|+|+|++++||.++. |.|..+|.||+||+||. ..|.|+.++++.+
T Consensus 366 ~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 366 GRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp SSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred CCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHH
Confidence 999999999999999999999999999877 78999999999999998 7899999998766
Q ss_pred H
Q 016375 362 L 362 (390)
Q Consensus 362 ~ 362 (390)
.
T Consensus 445 ~ 445 (773)
T 2xau_A 445 F 445 (773)
T ss_dssp H
T ss_pred h
Confidence 5
No 50
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=6.8e-38 Score=296.46 Aligned_cols=305 Identities=20% Similarity=0.241 Sum_probs=210.8
Q ss_pred HHhcCCC-----CCchHHH-----hhHHhHh------cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEE
Q 016375 23 CENVGWK-----TPSKIQA-----EAIPHAL------EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (390)
Q Consensus 23 l~~~g~~-----~~~~~Q~-----~~~~~i~------~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (390)
+..+||. .+++.|. .+++.++ +++++++.+|||+|||++++++++..+.. .+.++|
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~l 274 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRTA 274 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEE
Confidence 3455666 7899999 8888877 78999999999999999999999887765 467899
Q ss_pred EEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehh
Q 016375 87 VLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (390)
Q Consensus 87 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~ 166 (390)
|++|+++|+.|+++.++.+. +. ...+... .......-+-+.+...+.+.+... ..+.++++||+||+
T Consensus 275 ilaPTr~La~Q~~~~l~~~~----i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~--~~l~~l~lvViDEa 341 (673)
T 2wv9_A 275 VLAPTRVVAAEMAEALRGLP----VR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP--LRVPNYNLFVMDEA 341 (673)
T ss_dssp EEESSHHHHHHHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS--SCCCCCSEEEEEST
T ss_pred EEccHHHHHHHHHHHHhcCC----ee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc--cccccceEEEEeCC
Confidence 99999999999999887542 21 1000000 000111233344445555444442 35788999999999
Q ss_pred hhhcccccHHHHHHHHHhC-CCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHH
Q 016375 167 DRLLNDDFEKSLDEILNVI-PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLV 245 (390)
Q Consensus 167 H~~~~~~~~~~~~~~~~~~-~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (390)
|++ +..+...+..+.... +...++++||||+++.+..+... ..+.. . .....+.......+.
T Consensus 342 H~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~-------------v~~~~~~~~~~~~l~ 404 (673)
T 2wv9_A 342 HFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVH-D-------------VSSEIPDRAWSSGFE 404 (673)
T ss_dssp TCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEE-E-------------EECCCCSSCCSSCCH
T ss_pred ccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceE-E-------------EeeecCHHHHHHHHH
Confidence 976 221112222222322 25678999999998653221110 00110 0 000111111122222
Q ss_pred HHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEE
Q 016375 246 YILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV 325 (390)
Q Consensus 246 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~v 325 (390)
.+ .+ .+.++||||++++.++.+++.|++.+..+..+|+. +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 405 ~l-~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~V 477 (673)
T 2wv9_A 405 WI-TD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRV 477 (673)
T ss_dssp HH-HS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HH-Hh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEE
Confidence 22 22 57899999999999999999999999999999993 788999999999999999999999999999 9999
Q ss_pred EE--------------------ecCCCCcchhhhccccccCC-CCcceEEEEe---ccccHHHHHHHHHHh
Q 016375 326 IN--------------------YDIPTNSKDYIHRVGRTARA-GRTGVAISLV---NQYELEWYLQIEKLI 372 (390)
Q Consensus 326 i~--------------------~~~~~~~~~~~Q~~GR~~R~-~~~~~~i~~~---~~~~~~~~~~~~~~~ 372 (390)
|+ ++.|.+..+|.||+||+||. +++|.|++|+ ++.+...+..++...
T Consensus 478 I~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 478 IDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred EECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 97 45788889999999999999 7889999996 566655555555544
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=7e-38 Score=291.79 Aligned_cols=293 Identities=17% Similarity=0.193 Sum_probs=215.4
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCC
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 109 (390)
.++++|.++++.+..++++++.+|||+|||.++++++++ .+.++||++|+++|+.|+++.+.+...
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------------~g~~vLVl~PTReLA~Qia~~l~~~~g-- 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------------QGYKVLVLNPSVAATLGFGAYMSKAHG-- 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------------TTCCEEEEESCHHHHHHHHHHHHHHHS--
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------------CCCeEEEEcchHHHHHHHHHHHHHHhC--
Confidence 568888888888888899999999999999988777664 355799999999999999998866432
Q ss_pred CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCc
Q 016375 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189 (390)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~ 189 (390)
..+....|+.. .....+|+|+||+.|+. ...+.+.++++||+||+| +.+..+...+..+.+.++..+
T Consensus 283 -~~vg~~vG~~~-------~~~~~~IlV~TPGrLl~----~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~ 349 (666)
T 3o8b_A 283 -IDPNIRTGVRT-------ITTGAPVTYSTYGKFLA----DGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAG 349 (666)
T ss_dssp -CCCEEECSSCE-------ECCCCSEEEEEHHHHHH----TTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTT
T ss_pred -CCeeEEECcEe-------ccCCCCEEEECcHHHHh----CCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcC
Confidence 33444455533 34568999999999843 234567889999999998 566667777888888888766
Q ss_pred c--EEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHH
Q 016375 190 Q--TYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATR 267 (390)
Q Consensus 190 ~--~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~ 267 (390)
+ ++++|||++..+. ...+.......... ........... +....++++||||++++.++
T Consensus 350 ~~llil~SAT~~~~i~------~~~p~i~~v~~~~~------~~i~~~~~~~~-------l~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 350 ARLVVLATATPPGSVT------VPHPNIEEVALSNT------GEIPFYGKAIP-------IEAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp CSEEEEEESSCTTCCC------CCCTTEEEEECBSC------SSEEETTEEEC-------GGGSSSSEEEEECSCHHHHH
T ss_pred CceEEEECCCCCcccc------cCCcceEEEeeccc------chhHHHHhhhh-------hhhccCCcEEEEeCCHHHHH
Confidence 6 7888999987321 11111111100000 00111110000 12236789999999999999
Q ss_pred HHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEE----------ec--------
Q 016375 268 LLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----------YD-------- 329 (390)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~----------~~-------- 329 (390)
.+++.|++.++++..+||++++.+ |.++..+|||||+++++|+|++ ++.||+ ||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999998774 4556669999999999999996 999984 55
Q ss_pred ---CCCCcchhhhccccccCCCCcceEEEEeccccHHH--H--HHHHHHhCCccee
Q 016375 330 ---IPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEW--Y--LQIEKLIGMLYIL 378 (390)
Q Consensus 330 ---~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~--~--~~~~~~~~~~~~~ 378 (390)
.|.+..+|.||+||+|| |++|. +.|+++.+... + ..+.+.++...++
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~ 536 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAW 536 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHT
T ss_pred cccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccc
Confidence 78899999999999999 88898 89998766544 3 4455544444333
No 52
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.1e-36 Score=277.26 Aligned_cols=279 Identities=19% Similarity=0.203 Sum_probs=192.3
Q ss_pred hhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEE
Q 016375 37 EAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 116 (390)
Q Consensus 37 ~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 116 (390)
.....+.+++++++.+|||+|||.++++|++..+.. .+.++||++|+++|+.|+++.+.. ..+...
T Consensus 13 ~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~ 78 (459)
T 2z83_A 13 GSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRG------LPVRYQ 78 (459)
T ss_dssp --CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTT------SCEEEC
T ss_pred HHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcC------ceEeEE
Confidence 334456678899999999999999999999987765 467899999999999999998862 222221
Q ss_pred ecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHH-hCCCCccEEEEe
Q 016375 117 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN-VIPRMRQTYLFS 195 (390)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~-~~~~~~~~i~~s 195 (390)
.+.... .......+.++|.+.+.+.+.+. ..+.++++||+||+|++.... ...+..+.. ......+++++|
T Consensus 79 ~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~-~~~~~~~~~~~~~~~~~~il~S 150 (459)
T 2z83_A 79 TSAVQR-----EHQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPAS-IAARGYIATKVELGEAAAIFMT 150 (459)
T ss_dssp C-------------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHH-HHHHHHHHHHHHTTSCEEEEEC
T ss_pred eccccc-----CCCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchh-hHHHHHHHHHhccCCccEEEEE
Confidence 111110 01123457778888887766654 357889999999999641110 101111111 113567899999
Q ss_pred ecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHh
Q 016375 196 ATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRN 275 (390)
Q Consensus 196 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~ 275 (390)
||++.....+... ..+..... ...+...... ....+.+ ..+++||||+++..++.+++.|+.
T Consensus 151 AT~~~~~~~~~~~--~~pi~~~~--------------~~~~~~~~~~-~~~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~ 212 (459)
T 2z83_A 151 ATPPGTTDPFPDS--NAPIHDLQ--------------DEIPDRAWSS-GYEWITE-YAGKTVWFVASVKMGNEIAMCLQR 212 (459)
T ss_dssp SSCTTCCCSSCCC--SSCEEEEE--------------CCCCSSCCSS-CCHHHHH-CCSCEEEECSCHHHHHHHHHHHHH
T ss_pred cCCCcchhhhccC--CCCeEEec--------------ccCCcchhHH-HHHHHHh-cCCCEEEEeCChHHHHHHHHHHHh
Confidence 9998653221110 11111100 0111111111 1122232 367999999999999999999999
Q ss_pred cCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEE--------------------ecCCCCcc
Q 016375 276 LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN--------------------YDIPTNSK 335 (390)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~--------------------~~~~~~~~ 335 (390)
.+..+..+|+. +|..+++.|++|+.+|||||+++++|+|+|+ +.||+ ++.|.+..
T Consensus 213 ~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~ 287 (459)
T 2z83_A 213 AGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSA 287 (459)
T ss_dssp TTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHH
T ss_pred cCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHH
Confidence 99999999985 6678899999999999999999999999999 99998 66899999
Q ss_pred hhhhccccccCCCC-cceEEEEeccc
Q 016375 336 DYIHRVGRTARAGR-TGVAISLVNQY 360 (390)
Q Consensus 336 ~~~Q~~GR~~R~~~-~~~~i~~~~~~ 360 (390)
+|.||+||+||.|+ +|.+++|+.+.
T Consensus 288 ~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 288 SAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999999999987 89999999875
No 53
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=283.08 Aligned_cols=330 Identities=18% Similarity=0.220 Sum_probs=229.3
Q ss_pred CCchHHHhhHHhHh----cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 30 TPSKIQAEAIPHAL----EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.|+|||.+++.++. .+.+++++.+||+|||++++..+...+.... ..+++||||| .+++.||.+++.++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~------~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR------QNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS------CCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC------CCCCEEEEEC-chHHHHHHHHHHHH
Confidence 68999999998776 6789999999999999987665544433322 4556899999 67889999999999
Q ss_pred ccCCCceEEEEecCCchHHHHHh------------cCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccc
Q 016375 106 GSGISLRCAVLVGGVDMMQQTLA------------LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD 173 (390)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~ 173 (390)
... +.+..++|.......... ....++|+|+|++.+...... +....+++||+||+|++.+..
T Consensus 309 ~p~--~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~ 383 (800)
T 3mwy_W 309 APD--LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAE 383 (800)
T ss_dssp STT--CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSS
T ss_pred CCC--ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCch
Confidence 754 677777777665433221 234688999999999775432 223358999999999885533
Q ss_pred cHHHHHHHHHhCCCCccEEEEeecCchh----HHHHHHHhcC-----------------------------CCeEEecCC
Q 016375 174 FEKSLDEILNVIPRMRQTYLFSATMTKK----VKKLQRACLK-----------------------------NPVKIEAAS 220 (390)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~saT~~~~----~~~~~~~~~~-----------------------------~~~~~~~~~ 220 (390)
. .....+..++ ..+.+++||||..+ +-.+...... .+..++...
T Consensus 384 s--~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 384 S--SLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp S--HHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred h--HHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 2 3334444443 34579999998431 1111111100 111111110
Q ss_pred cccc--ccccceeEEec---------------------------------------------------------------
Q 016375 221 KYST--VDTLKQQYRFV--------------------------------------------------------------- 235 (390)
Q Consensus 221 ~~~~--~~~~~~~~~~~--------------------------------------------------------------- 235 (390)
.... .+........+
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 0000 00000000000
Q ss_pred ------------CCCcchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhcc
Q 016375 236 ------------PAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA 301 (390)
Q Consensus 236 ------------~~~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 301 (390)
....+...+..++... .+.++||||+....+..+.++|...++.+..++|.++..+|.++++.|++
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 0122333445555543 56899999999999999999999999999999999999999999999998
Q ss_pred CCc---cEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcc--eEEEEeccccH--HHHHHHHHHhCC
Q 016375 302 GEC---NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTG--VAISLVNQYEL--EWYLQIEKLIGM 374 (390)
Q Consensus 302 ~~~---~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~--~~i~~~~~~~~--~~~~~~~~~~~~ 374 (390)
++. .+|++|.++++|+|++.+++||+++++|++..+.|++||++|.|++. .++.++..+.. ..+....++...
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l 700 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMIL 700 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTS
T ss_pred CCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 654 48999999999999999999999999999999999999999999765 45666776644 344455555544
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.6e-35 Score=267.79 Aligned_cols=269 Identities=16% Similarity=0.152 Sum_probs=186.2
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchH
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 123 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (390)
+++++++.+|||+|||.+++++++..+.. .+.+++|++|+++|+.|+.+.+. +..+....+....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-
Confidence 36789999999999999998888866654 56789999999999999988775 2344444433211
Q ss_pred HHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHh-CCCCccEEEEeecCchhH
Q 016375 124 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV-IPRMRQTYLFSATMTKKV 202 (390)
Q Consensus 124 ~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~-~~~~~~~i~~saT~~~~~ 202 (390)
.......+.+.|.+.+.+.+... ..+.++++||+||+|++ ...+......+... .+...++++||||+++..
T Consensus 66 ----~~~~~~~~~~~~~~~l~~~l~~~--~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 66 ----ERTGNEIVDFMCHSTFTMKLLQG--VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp -------CCCSEEEEEHHHHHHHHHHT--CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCC
T ss_pred ----cCCCCceEEEEchHHHHHHHhcC--ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcch
Confidence 11123456777888777666552 34788999999999976 32222222333322 245678999999998742
Q ss_pred HHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceee
Q 016375 203 KKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 282 (390)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~ 282 (390)
..+... ..+. ... ....+... ...+...+.+ .+++++|||++++.++.+++.|++.+..+..
T Consensus 139 ~~~~~~--~~~i-~~~-------------~~~~~~~~-~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 139 EAFPPS--NSPI-IDE-------------ETRIPDKA-WNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CSSCCC--SSCC-EEE-------------ECCCCSSC-CSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhcCC--CCce-eec-------------cccCCHHH-HHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 211100 0000 000 00011111 1112233333 3568999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCE-----------------EEEecCCCCcchhhhcccccc
Q 016375 283 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM-----------------VINYDIPTNSKDYIHRVGRTA 345 (390)
Q Consensus 283 ~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~-----------------vi~~~~~~~~~~~~Q~~GR~~ 345 (390)
+||. +|.++++.|++|+.+|||||+++++|+|+| +.. +|.++.|.+..+|.|++||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9986 577899999999999999999999999999 655 567788899999999999999
Q ss_pred CCCCcceEEEEe
Q 016375 346 RAGRTGVAISLV 357 (390)
Q Consensus 346 R~~~~~~~i~~~ 357 (390)
|.|+.+.+++++
T Consensus 276 R~g~~~~~~~~~ 287 (431)
T 2v6i_A 276 RNPEKLGDIYAY 287 (431)
T ss_dssp CCTTCCCCEEEE
T ss_pred CCCCCCCeEEEE
Confidence 998654444444
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=243.83 Aligned_cols=209 Identities=70% Similarity=1.088 Sum_probs=187.6
Q ss_pred ccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCc
Q 016375 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 83 (390)
..+..+|+++++++.+.+.|+.+|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.... .+.
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~------~~~ 112 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP------QRL 112 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC------CSS
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC------CCc
Confidence 34578899999999999999999999999999999999999999999999999999999999988876532 356
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEE
Q 016375 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (390)
Q Consensus 84 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIi 163 (390)
++||++|+++|+.|+.+.++.+....++.+..+.|+.............++|+|+||+.+.+.+.+...+.+..+++||+
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 79999999999999999999998777788999999988777666666789999999999999888765567889999999
Q ss_pred ehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEec
Q 016375 164 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEA 218 (390)
Q Consensus 164 DE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~ 218 (390)
||+|++.+.++...+..++..++...+++++|||+++.+..+.+.++.+|..+..
T Consensus 193 DEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 193 DEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp CSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999989999999999999988999999999999999999999998877653
No 56
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.8e-34 Score=241.80 Aligned_cols=215 Identities=35% Similarity=0.495 Sum_probs=190.4
Q ss_pred ccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCc
Q 016375 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 83 (390)
+.++.+|+++++++.+.+.++.+|+..|+++|.++++.+.+++++++.+|||+|||+++++|++..+..... .....++
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~-~~~~~~~ 103 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF-LERGDGP 103 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC-CCTTCCC
T ss_pred CCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc-cccCCCC
Confidence 456889999999999999999999999999999999999999999999999999999999999988764221 1122467
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEE
Q 016375 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (390)
Q Consensus 84 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIi 163 (390)
++||++|+++|+.|+.+.++.+....++.+..+.|+............+++|+|+||+.+.+.+.+.. ..+.+++++|+
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~~~~~~~~lVi 182 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK-TNLRRTTYLVL 182 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTS-CCCTTCCEEEE
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-CCcccccEEEE
Confidence 89999999999999999999988777889999999998887777666779999999999999887654 56889999999
Q ss_pred ehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCC
Q 016375 164 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 220 (390)
Q Consensus 164 DE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~ 220 (390)
||+|++.+.++...+..++..+++..|++++|||+++.+..+.+.++.++..+....
T Consensus 183 DEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 183 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp TTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred eCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999998999999999999999999999999999999999999999888776553
No 57
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1e-33 Score=232.92 Aligned_cols=202 Identities=35% Similarity=0.626 Sum_probs=179.4
Q ss_pred CCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEE
Q 016375 8 KTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACV 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 87 (390)
.+|+++++++++.+.|+.+|+..|+++|.++++.+.+++++++.+|||+|||++++.+++..+... ..+.+++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------~~~~~~li 76 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK------KDNIQAMV 76 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT------SCSCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc------CCCeeEEE
Confidence 579999999999999999999999999999999999999999999999999999998888765321 14567999
Q ss_pred EcCCHHHHHHHHHHHHHhccCC-CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehh
Q 016375 88 LSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 166 (390)
Q Consensus 88 l~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~ 166 (390)
++|+++|+.|+.+.++++.... +..+....|+.............++|+|+||+.+.+.+.+.. ..+.+++++|+||+
T Consensus 77 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~lViDEa 155 (206)
T 1vec_A 77 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV-AKVDHVQMIVLDEA 155 (206)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEETH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC-cCcccCCEEEEECh
Confidence 9999999999999999987765 688888999888777766677789999999999998887643 56788999999999
Q ss_pred hhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEE
Q 016375 167 DRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKI 216 (390)
Q Consensus 167 H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~ 216 (390)
|++.+.++...+..+...+++..+++++|||+++....+.+.++..|..+
T Consensus 156 h~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 156 DKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999889999999999999889999999999999999999998887654
No 58
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=237.49 Aligned_cols=213 Identities=37% Similarity=0.601 Sum_probs=184.4
Q ss_pred ccccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCc
Q 016375 4 EKEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 83 (390)
..++.+|+++++++.+.+.|+.+|+..|+++|.++++.+.+++++++.+|||+|||+++++|++..+.+... ....+.
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~ 98 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGL 98 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCCc
Confidence 345778999999999999999999999999999999999999999999999999999999999988765321 111466
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEE
Q 016375 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (390)
Q Consensus 84 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIi 163 (390)
++||++|+++|+.|+.+.++.++...++.+..+.|+.......... ..++|+|+||+.+.+.+.+...+.+.+++++|+
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 7999999999999999999999888788888889888766554444 468999999999999887755566788999999
Q ss_pred ehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecC
Q 016375 164 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA 219 (390)
Q Consensus 164 DE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~ 219 (390)
||+|++.+.++...+..++..++...|++++|||+++.+..+.+.++.+|..+...
T Consensus 178 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 178 DEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp TTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred eChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 99999998889999999999999889999999999999999999999888877554
No 59
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.5e-33 Score=265.22 Aligned_cols=324 Identities=17% Similarity=0.178 Sum_probs=217.4
Q ss_pred CCchHHHhhHHhHh---------cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHH
Q 016375 30 TPSKIQAEAIPHAL---------EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 100 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~---------~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 100 (390)
.|+|||.+++.++. .+.++++..+||+|||++++..+...+..... .....+++|||+|+ +++.||.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~--~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD--CKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT--SSCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc--ccCCCCcEEEEecH-HHHHHHHH
Confidence 68999999999874 34579999999999999876655544332211 11124569999996 88899999
Q ss_pred HHHHhccCCCceEEEEecCCchHHH--H-HhcC-----CCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhccc
Q 016375 101 QFEALGSGISLRCAVLVGGVDMMQQ--T-LALG-----KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND 172 (390)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-----~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~ 172 (390)
++.++... .+.+..+.++...... . .... ..++|+|+|++.+...... +....+++||+||+|++.+.
T Consensus 132 E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~---l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 132 EVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV---LHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT---TTTSCCCEEEETTGGGCCTT
T ss_pred HHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH---hhcCCccEEEEECceecCCh
Confidence 99998754 4555556655433211 1 1111 2478999999999875432 33456899999999987653
Q ss_pred ccHHHHHHHHHhCCCCccEEEEeecCchhH-------------------HHHHHHhc-----------------------
Q 016375 173 DFEKSLDEILNVIPRMRQTYLFSATMTKKV-------------------KKLQRACL----------------------- 210 (390)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~saT~~~~~-------------------~~~~~~~~----------------------- 210 (390)
. ......+.. ++. .+.+++||||..+. ..+.+.+.
T Consensus 208 ~-~~~~~al~~-l~~-~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 284 (644)
T 1z3i_X 208 D-NQTYLALNS-MNA-QRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKL 284 (644)
T ss_dssp C-HHHHHHHHH-HCC-SEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHH
T ss_pred h-hHHHHHHHh-ccc-CcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHH
Confidence 3 233333333 333 45899999985421 00000000
Q ss_pred ------CCCeEEecCCccc--cccccceeEEec-----------------------------------------------
Q 016375 211 ------KNPVKIEAASKYS--TVDTLKQQYRFV----------------------------------------------- 235 (390)
Q Consensus 211 ------~~~~~~~~~~~~~--~~~~~~~~~~~~----------------------------------------------- 235 (390)
-.+..++...... ..+........+
T Consensus 285 ~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~ 364 (644)
T 1z3i_X 285 QELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPA 364 (644)
T ss_dssp HHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHH
Confidence 0000000000000 000000000000
Q ss_pred -------------------------------CCCcchhHHHHHHHh---hCCCceEEEecchhHHHHHHHHHHhcCCcee
Q 016375 236 -------------------------------PAKYKDCYLVYILTE---VSASSTMVFTRTCDATRLLALMLRNLGQRAI 281 (390)
Q Consensus 236 -------------------------------~~~~~~~~~~~~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~ 281 (390)
....+...+..++.. ..+.++|||++....++.+.+.|...++.+.
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~ 444 (644)
T 1z3i_X 365 LIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYV 444 (644)
T ss_dssp HHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEE
Confidence 001122233333332 3578999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHHHhccCCcc---EEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcce--EEEE
Q 016375 282 PISGHMSQSKRLGALNKFKAGECN---ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGV--AISL 356 (390)
Q Consensus 282 ~~~~~~~~~~~~~~~~~f~~~~~~---ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~--~i~~ 356 (390)
.+||+++..+|.++++.|+++... +|++|.++++|+|++.+++||+++++|++..+.|++||++|.|++.. ++.+
T Consensus 445 ~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~l 524 (644)
T 1z3i_X 445 RLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRL 524 (644)
T ss_dssp EECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEE
T ss_pred EEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEE
Confidence 999999999999999999998653 78999999999999999999999999999999999999999997754 5556
Q ss_pred eccccHH
Q 016375 357 VNQYELE 363 (390)
Q Consensus 357 ~~~~~~~ 363 (390)
+..+..+
T Consensus 525 v~~~tiE 531 (644)
T 1z3i_X 525 LSTGTIE 531 (644)
T ss_dssp EETTSHH
T ss_pred EECCCHH
Confidence 6666543
No 60
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=7e-34 Score=237.49 Aligned_cols=212 Identities=33% Similarity=0.461 Sum_probs=176.6
Q ss_pred ccccCCccc-CCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCC
Q 016375 4 EKEVKTFKE-LGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPA 82 (390)
Q Consensus 4 ~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~ 82 (390)
+++..+|++ ++++.++.+.++.+|+..|+++|.++++.+.+++++++.+|||+|||+++++|++..+...........+
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~ 94 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNG 94 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CC
T ss_pred CCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCC
Confidence 456778888 7999999999999999999999999999999999999999999999999999998877644332233367
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEE
Q 016375 83 FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (390)
Q Consensus 83 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iI 162 (390)
+++||++|+++|+.|+.+.++.+. ..++.+..+.|+............+++|+|+||+.+.+.+.... ..+.+++++|
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~-~~~~~~~~lV 172 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS-VNLRSITYLV 172 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC-CCCTTCCEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cCcccceEEE
Confidence 789999999999999999999986 44678888888887776666666779999999999999877644 5688899999
Q ss_pred EehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEe
Q 016375 163 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIE 217 (390)
Q Consensus 163 iDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~ 217 (390)
+||+|++.+.++...+..++..++...|++++|||+++.+..+...++.++..+.
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999988877653
No 61
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=6.4e-34 Score=236.09 Aligned_cols=207 Identities=32% Similarity=0.518 Sum_probs=180.2
Q ss_pred cCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEE
Q 016375 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFAC 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (390)
..+|+++++++.+.+.++.+|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+.++|
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~------~~~~~~l 76 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE------RAEVQAV 76 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT------SCSCCEE
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC------cCCceEE
Confidence 4679999999999999999999999999999999999999999999999999999999888776432 1456899
Q ss_pred EEcCCHHHHHHHHHHHHHhccCC----CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEE
Q 016375 87 VLSPTRELAIQISEQFEALGSGI----SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (390)
Q Consensus 87 il~P~~~l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iI 162 (390)
|++|+++|+.|+.+.++++.... ++.+..+.|+.............++|+|+||+.+.+.+.+.. ..+..++++|
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~lV 155 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA-LDVHTAHILV 155 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC-CCGGGCCEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC-CCcCcceEEE
Confidence 99999999999999999987655 578888888887666555555678999999999998887643 5678899999
Q ss_pred EehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecCC
Q 016375 163 LDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 220 (390)
Q Consensus 163 iDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~ 220 (390)
+||+|++.+.++...+..+...++...|++++|||+++.+..+.+.++.+|..+....
T Consensus 156 iDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 156 VDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred EcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 9999999988899999999999988889999999999999999999999988775544
No 62
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.6e-33 Score=264.33 Aligned_cols=289 Identities=19% Similarity=0.226 Sum_probs=206.9
Q ss_pred HHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEec
Q 016375 39 IPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 118 (390)
Q Consensus 39 ~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 118 (390)
....++++++++.||||+|||.. ++..+.. .+..+|++|+++|+.|+++.++..+ ..+..+.|
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~----al~~l~~---------~~~gl~l~PtR~LA~Qi~~~l~~~g----~~v~lltG 211 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYH----AIQKYFS---------AKSGVYCGPLKLLAHEIFEKSNAAG----VPCDLVTG 211 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHH----HHHHHHH---------SSSEEEEESSHHHHHHHHHHHHHTT----CCEEEECS
T ss_pred HHHhcCCCEEEEEcCCCCCHHHH----HHHHHHh---------cCCeEEEeCHHHHHHHHHHHHHhcC----CcEEEEEC
Confidence 34456788999999999999984 3333333 1235899999999999999998864 67778888
Q ss_pred CCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCC-CCccEEEEeec
Q 016375 119 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSAT 197 (390)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~i~~saT 197 (390)
+..... .......+++++|++.+. ....++++|+||+|++.+.+++..+..++..++ ...+++++|||
T Consensus 212 ~~~~iv--~TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT 280 (677)
T 3rc3_A 212 EERVTV--QPNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAA 280 (677)
T ss_dssp SCEECC--STTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGG
T ss_pred CeeEEe--cCCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccch
Confidence 765411 011124778888875432 135679999999999988888888888888777 56688888999
Q ss_pred CchhHHHHHHHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcC
Q 016375 198 MTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 277 (390)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~ 277 (390)
. +....+.... .....+.......... ...... ..+... ....+|||++++.++.+++.|.+.+
T Consensus 281 ~-~~i~~l~~~~-~~~~~v~~~~r~~~l~-------~~~~~l------~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g 344 (677)
T 3rc3_A 281 I-DLVMELMYTT-GEEVEVRDYKRLTPIS-------VLDHAL------ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRG 344 (677)
T ss_dssp H-HHHHHHHHHH-TCCEEEEECCCSSCEE-------ECSSCC------CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTT
T ss_pred H-HHHHHHHHhc-CCceEEEEeeecchHH-------HHHHHH------HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcC
Confidence 4 3333333332 2222222111111000 000000 001111 3445889999999999999999999
Q ss_pred CceeeccCCCCHHHHHHHHHHhcc--CCccEEEEeCCCCCCCCCCCCCEEEEecC--------------CCCcchhhhcc
Q 016375 278 QRAIPISGHMSQSKRLGALNKFKA--GECNILICTDVASRGLDIPSVDMVINYDI--------------PTNSKDYIHRV 341 (390)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~f~~--~~~~ilv~t~~~~~G~d~~~~~~vi~~~~--------------~~~~~~~~Q~~ 341 (390)
..+..+||++++.+|.++++.|++ |..+|||||+++++|+|+ +++.||+++. |.+..+|.||+
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIA 423 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHH
T ss_pred CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHh
Confidence 999999999999999999999999 889999999999999999 9999999998 77899999999
Q ss_pred ccccCCCCc---ceEEEEeccccHHHHHHHHHHhC
Q 016375 342 GRTARAGRT---GVAISLVNQYELEWYLQIEKLIG 373 (390)
Q Consensus 342 GR~~R~~~~---~~~i~~~~~~~~~~~~~~~~~~~ 373 (390)
||+||.|++ |.|+.+. +.+...+..+.....
T Consensus 424 GRAGR~g~~g~~G~v~~l~-~~d~~~~~~~~~~~~ 457 (677)
T 3rc3_A 424 GRAGRFSSRFKEGEVTTMN-HEDLSLLKEILKRPV 457 (677)
T ss_dssp TTBTCTTSSCSSEEEEESS-TTHHHHHHHHHHSCC
T ss_pred cCCCCCCCCCCCEEEEEEe-cchHHHHHHHHhcCc
Confidence 999999865 5555554 444444444444333
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.5e-33 Score=234.89 Aligned_cols=207 Identities=35% Similarity=0.588 Sum_probs=174.4
Q ss_pred cccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCce
Q 016375 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (390)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (390)
+.+.+|+++++++.+.+.++.+|+..|+++|.++++.+.+++++++.+|||+|||.+++++++..+... ..+.+
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~------~~~~~ 84 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------VKAPQ 84 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------CCSCC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc------CCCce
Confidence 446789999999999999999999999999999999999999999999999999999988888776332 14668
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEe
Q 016375 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLD 164 (390)
Q Consensus 85 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiD 164 (390)
+||++|+++|+.|+.+.++.+....++.+..+.|+.........+.. ++|+|+||+.+.+.+.+.. ..+.+++++|+|
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~-~~~~~~~~iViD 162 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRR-FRTDKIKMFILD 162 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTS-SCCTTCCEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCC-cchhhCcEEEEc
Confidence 99999999999999999999988778888888888776555444433 8999999999998887643 567889999999
Q ss_pred hhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecC
Q 016375 165 EADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA 219 (390)
Q Consensus 165 E~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~ 219 (390)
|+|++.+.++...+..+...++...|++++|||+++.+..+.+.++.++..+...
T Consensus 163 Eah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 163 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred ChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 9999988889999999999998889999999999999999999999888877554
No 64
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.2e-33 Score=236.98 Aligned_cols=207 Identities=37% Similarity=0.565 Sum_probs=172.5
Q ss_pred cccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCce
Q 016375 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (390)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (390)
.++.+|+++++++.+.+.|+.+|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+.+
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~------~~~~~ 100 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE------FKETQ 100 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT------SCSCC
T ss_pred CccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------CCCce
Confidence 456789999999999999999999999999999999999999999999999999999998888765321 14568
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCC-CCCEEEeCCchhHHHhhcCCCccCCCccEEEE
Q 016375 85 ACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGK-RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (390)
Q Consensus 85 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIi 163 (390)
+||++|+++|+.|+.+.++.++...+..+....|+............ .++|+|+||+.+.+.+.+.. ..+..+++||+
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~-~~~~~~~~lVi 179 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY-LSPKWIKMFVL 179 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS-SCSTTCCEEEE
T ss_pred EEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC-cCcccCcEEEE
Confidence 99999999999999999999988777888888888776555444444 38999999999999887643 56788999999
Q ss_pred ehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEec
Q 016375 164 DEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEA 218 (390)
Q Consensus 164 DE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~ 218 (390)
||+|++.+.++...+..++..++...+++++|||+++.+..+.+.++.++..+..
T Consensus 180 DEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 180 DEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred CCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 9999998888999999999999988999999999999999999999988877644
No 65
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.3e-33 Score=233.44 Aligned_cols=205 Identities=31% Similarity=0.517 Sum_probs=176.2
Q ss_pred cccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCce
Q 016375 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF 84 (390)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (390)
.+..+|+++++++.+.+.|+.+|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+.+
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~------~~~~~ 94 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE------NLSTQ 94 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------SCSCC
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------CCCce
Confidence 456789999999999999999999999999999999999999999999999999999998888766432 14678
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCC-CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEE
Q 016375 85 ACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (390)
Q Consensus 85 ~lil~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIi 163 (390)
+||++|+++|+.|+.+.++.++... ++.+..+.|+.......... .+++|+|+||+.+.+.+.... +.+.+++++|+
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~-~~~~~~~~lVi 172 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDY-LNPGSIRLFIL 172 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTS-SCGGGCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCC-cccccCCEEEe
Confidence 9999999999999999999987654 68888888888766555444 469999999999999877643 56788999999
Q ss_pred ehhhhhcccc-cHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEe
Q 016375 164 DEADRLLNDD-FEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIE 217 (390)
Q Consensus 164 DE~H~~~~~~-~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~ 217 (390)
||+|++.+.+ +...+..++..++...|++++|||+++.+......++.++..+.
T Consensus 173 DEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 173 DEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp SSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred CCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 9999998876 89999999999998899999999999998888888888877664
No 66
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-33 Score=237.96 Aligned_cols=217 Identities=38% Similarity=0.546 Sum_probs=184.6
Q ss_pred ccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhc---CCCCCC
Q 016375 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAEN---QRTVPA 82 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~---~~~~~~ 82 (390)
++.+|+++++++.+.+.|+.+|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+...... .....+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 56789999999999999999999999999999999999999999999999999999999999887643211 011235
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEE
Q 016375 83 FFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (390)
Q Consensus 83 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iI 162 (390)
.++||++|+++|+.|+.+.++.++...++.+..+.|+.............++|+|+||+.+.+.+.+.. ..+.+++++|
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~lV 179 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK-ISLEFCKYIV 179 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS-BCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCC-CChhhCCEEE
Confidence 689999999999999999999998887888899999988877777777789999999999999887654 5678899999
Q ss_pred EehhhhhcccccHHHHHHHHHh--CCC--CccEEEEeecCchhHHHHHHHhcCCCeEEecCCccc
Q 016375 163 LDEADRLLNDDFEKSLDEILNV--IPR--MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYS 223 (390)
Q Consensus 163 iDE~H~~~~~~~~~~~~~~~~~--~~~--~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (390)
+||+|++.+.++...+..++.. .+. ..|++++|||+++.+..+.+.++.++..+.......
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~ 244 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGS 244 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC----
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCC
Confidence 9999999998899999999884 343 578999999999999999999998888776655433
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=5.9e-33 Score=228.55 Aligned_cols=204 Identities=44% Similarity=0.617 Sum_probs=177.0
Q ss_pred CcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEE
Q 016375 9 TFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL 88 (390)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil 88 (390)
+|+++++++++.+.++.+|+..|+++|.++++.+.+++++++.+|||+|||++++.+++..+.... ....++++||+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~---~~~~~~~~lil 78 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ---ERGRKPRALVL 78 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC---CTTCCCSEEEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc---ccCCCCcEEEE
Confidence 589999999999999999999999999999999999999999999999999999888887764311 11256789999
Q ss_pred cCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhh
Q 016375 89 SPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR 168 (390)
Q Consensus 89 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~ 168 (390)
+|+++|+.|+.+.++.+... +.+..+.|+............+++|+|+|++.+.+.+... .+.+.+++++|+||+|+
T Consensus 79 ~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDEah~ 155 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG-VLDLSRVEVAVLDEADE 155 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT-SSCCTTCSEEEEESHHH
T ss_pred ECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC-CcchhhceEEEEEChhH
Confidence 99999999999999998765 6777888888766655555567999999999999888764 35678899999999999
Q ss_pred hcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEec
Q 016375 169 LLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEA 218 (390)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~ 218 (390)
+.+.++...+..++..++...+++++|||+++....+.+.++.+|..+..
T Consensus 156 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 156 MLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 98888999999999999888999999999999999999999988876643
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.2e-33 Score=235.78 Aligned_cols=205 Identities=39% Similarity=0.597 Sum_probs=177.6
Q ss_pred CCcccCC--CCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceE
Q 016375 8 KTFKELG--LRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (390)
Q Consensus 8 ~~~~~~~--~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (390)
.+|.+++ +++++.+.|+.+|+..|+++|.++++.+..++++++.+|||+|||+++++|++..+.+.... ...+.++
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~~~ 129 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGTGV 129 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGGCCCE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccCCceE
Confidence 3456665 89999999999999999999999999999999999999999999999999999888753211 1146679
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEeh
Q 016375 86 CVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDE 165 (390)
Q Consensus 86 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE 165 (390)
||++|+++|+.|+.+.++++....+..+..+.|+............+++|+|+||+.+...+.....+.+.++++||+||
T Consensus 130 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDE 209 (262)
T 3ly5_A 130 LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE 209 (262)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcC
Confidence 99999999999999999999888888899999998877776666667999999999999988876656788999999999
Q ss_pred hhhhcccccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCe
Q 016375 166 ADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPV 214 (390)
Q Consensus 166 ~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~ 214 (390)
+|++.+.++...+..+...++..+|++++|||+++.+..+.+..+..+.
T Consensus 210 ah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 210 ADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred hHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 9999998999999999999999999999999999999999988876543
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.8e-32 Score=227.72 Aligned_cols=205 Identities=34% Similarity=0.607 Sum_probs=174.2
Q ss_pred ccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceE
Q 016375 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFA 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (390)
...+|+++++++++.+.|+.+|+..|+++|.++++.+.+++++++.+|||+|||++++.+++..+... ..+.++
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~------~~~~~~ 85 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVSV 85 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC------TTCCCE
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc------CCCEEE
Confidence 34679999999999999999999999999999999999999999999999999999998888765321 134579
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCC-CceEEEEecCCchHHHHHhcC-CCCCEEEeCCchhHHHhhcCCCccCCCccEEEE
Q 016375 86 CVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVL 163 (390)
Q Consensus 86 lil~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIi 163 (390)
||++|+++|+.|+.+.++++.... ++.+..+.|+.........+. ..++|+|+|++.+.+.+.+.. ..+.+++++|+
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~lVi 164 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS-LNLKHIKHFIL 164 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS-SCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC-CCcccCCEEEE
Confidence 999999999999999999987655 688888888887655544433 357999999999998887643 56788999999
Q ss_pred ehhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEe
Q 016375 164 DEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIE 217 (390)
Q Consensus 164 DE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~ 217 (390)
||+|++.+ .++...+..+...++...|++++|||+++....+.+.++.+|..+.
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999886 5777888888888888899999999999999999999988887653
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=2.9e-32 Score=267.58 Aligned_cols=311 Identities=14% Similarity=0.145 Sum_probs=203.2
Q ss_pred CCchHHHhhHHhHhc--------------CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHH
Q 016375 30 TPSKIQAEAIPHALE--------------GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELA 95 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~--------------~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 95 (390)
.|||+|.++++.+.+ +++++++++||||||+++ ++++..+... ....++||++|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~------~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL------DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC------TTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc------CCCceEEEEeCcHHHH
Confidence 599999999998865 257999999999999987 4444433211 1346899999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEecCCchHHHHHhc-CCCCCEEEeCCchhHHHhhcCCCc-cCCCccEEEEehhhhhcccc
Q 016375 96 IQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL-GKRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLNDD 173 (390)
Q Consensus 96 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~t~~~l~~~~~~~~~~-~~~~~~~iIiDE~H~~~~~~ 173 (390)
.||.+.+..+.... ..++.........+ ....+|+|+|+++|...+...... .+..+.+||+||||++...
T Consensus 344 ~Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~- 416 (1038)
T 2w00_A 344 YQTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG- 416 (1038)
T ss_dssp HHHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH-
T ss_pred HHHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch-
Confidence 99999999886431 12222222222222 346899999999999876543211 3456789999999986543
Q ss_pred cHHHHHHHHHhCCCCccEEEEeecCchhHH----HHHHHhcCC-----------------CeEEecCCccccccc--cc-
Q 016375 174 FEKSLDEILNVIPRMRQTYLFSATMTKKVK----KLQRACLKN-----------------PVKIEAASKYSTVDT--LK- 229 (390)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~saT~~~~~~----~~~~~~~~~-----------------~~~~~~~~~~~~~~~--~~- 229 (390)
.....+...+++ .+++++||||..... ......++. +..+........... ..
T Consensus 417 --~~~~~I~~~~p~-a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~ 493 (1038)
T 2w00_A 417 --EAQKNLKKKFKR-YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETET 493 (1038)
T ss_dssp --HHHHHHHHHCSS-EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCC
T ss_pred --HHHHHHHHhCCc-ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccc
Confidence 335566666765 569999999975321 011111111 222111110000000 00
Q ss_pred --e------eEEecCCCcchhHH-HHHHHhh-----------CCCceEEEecchhHHHHHHHHHHhcC------------
Q 016375 230 --Q------QYRFVPAKYKDCYL-VYILTEV-----------SASSTMVFTRTCDATRLLALMLRNLG------------ 277 (390)
Q Consensus 230 --~------~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~lvf~~~~~~~~~l~~~l~~~~------------ 277 (390)
. ....+....+...+ ..++.+. .+.++||||+++..|..+++.|.+.+
T Consensus 494 d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~ 573 (1038)
T 2w00_A 494 DEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKP 573 (1038)
T ss_dssp CHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCC
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccccc
Confidence 0 00000011111122 2222211 34579999999999999999998754
Q ss_pred Cce-eeccCC----------C----------CH-----------------------------HHHHHHHHHhccCCccEE
Q 016375 278 QRA-IPISGH----------M----------SQ-----------------------------SKRLGALNKFKAGECNIL 307 (390)
Q Consensus 278 ~~~-~~~~~~----------~----------~~-----------------------------~~~~~~~~~f~~~~~~il 307 (390)
.++ .++++. + ++ ..|.+++++|++|+++||
T Consensus 574 ~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~IL 653 (1038)
T 2w00_A 574 LRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLL 653 (1038)
T ss_dssp CCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred CcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEE
Confidence 344 445542 1 11 137788999999999999
Q ss_pred EEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCc----ceEEEEec
Q 016375 308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRT----GVAISLVN 358 (390)
Q Consensus 308 v~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~----~~~i~~~~ 358 (390)
|+|+++.+|+|.|.+ .++.++.|.+...++|++||++|.+++ |.++.|+.
T Consensus 654 Ivvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 654 IVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999999999 567788999999999999999999753 66676665
No 71
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=235.95 Aligned_cols=205 Identities=33% Similarity=0.472 Sum_probs=177.9
Q ss_pred ccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHhcC--CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCc
Q 016375 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHALEG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAF 83 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~ 83 (390)
.+.+|+++++++.+.+.|+.+||..|+++|.++++.+..+ +++++.+|||+|||++|++|++..+... ..++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~------~~~~ 163 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------NKYP 163 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT------SCSC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc------CCCc
Confidence 3578999999999999999999999999999999999987 8999999999999999999998876432 2456
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccCC-CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEE
Q 016375 84 FACVLSPTRELAIQISEQFEALGSGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLV 162 (390)
Q Consensus 84 ~~lil~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iI 162 (390)
++||++|+++|+.|+.+.++.++... ++.+....++....... ...++|+|+||+.|.+.+.+...+.+.+++++|
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lV 240 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEE
Confidence 79999999999999999999987643 57777777776543222 456899999999999999776667788999999
Q ss_pred Eehhhhhcc-cccHHHHHHHHHhCCCCccEEEEeecCchhHHHHHHHhcCCCeEEecC
Q 016375 163 LDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA 219 (390)
Q Consensus 163 iDE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~ 219 (390)
+||+|++.+ ..+...+..+...++..+|++++|||+++.+..+...++.+|..+...
T Consensus 241 lDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp ETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 999999887 688889999999999999999999999999999999999999887654
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=2.9e-30 Score=237.33 Aligned_cols=333 Identities=18% Similarity=0.153 Sum_probs=235.0
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
.+|+ .+++.|.-..-.+.+|+ +..+.||+|||+++.+|++-.++ .|+.+.|++|+..|+.+-++.+..
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL---------~G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL---------IGKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh---------cCCceEEEeccHHHHHhHHHHHHH
Confidence 3688 68888887776666554 88999999999999998875543 567799999999999999999988
Q ss_pred hccCCCceEEEEecCC--------------------------------------------------chHHHHHhcCCCCC
Q 016375 105 LGSGISLRCAVLVGGV--------------------------------------------------DMMQQTLALGKRPH 134 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~ 134 (390)
+...+++.+.+..... ....+. ....||
T Consensus 139 l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err--~aY~~D 216 (822)
T 3jux_A 139 VYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRK--EAYLCD 216 (822)
T ss_dssp HHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHH--HHHHSS
T ss_pred HHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHH--HHhcCC
Confidence 8887889988877721 011111 112589
Q ss_pred EEEeCCchh-HHHhhcCC-----CccCCCccEEEEehhhhhccc------------------------------------
Q 016375 135 IVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLND------------------------------------ 172 (390)
Q Consensus 135 i~i~t~~~l-~~~~~~~~-----~~~~~~~~~iIiDE~H~~~~~------------------------------------ 172 (390)
|+.+|..-| ++++..+- ....+.+.+.||||++.++=+
T Consensus 217 ItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~ 296 (822)
T 3jux_A 217 VTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFT 296 (822)
T ss_dssp EEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEE
T ss_pred CEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEE
Confidence 999998766 44444321 122467899999999932100
Q ss_pred ------------------------------ccHHHHHHHHHh------C-------------------------------
Q 016375 173 ------------------------------DFEKSLDEILNV------I------------------------------- 185 (390)
Q Consensus 173 ------------------------------~~~~~~~~~~~~------~------------------------------- 185 (390)
.....+..+.+. +
T Consensus 297 vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~ 376 (822)
T 3jux_A 297 VDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSG 376 (822)
T ss_dssp ECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGG
T ss_pred EEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCch
Confidence 000000011000 0
Q ss_pred ------------------------------CCCccEEEEeecCchhHHHHHHHhcCCCeEEecCCccccccccceeEEec
Q 016375 186 ------------------------------PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFV 235 (390)
Q Consensus 186 ------------------------------~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (390)
....++.+||+|.......+.+.+-.. .+..+...+..........+.
T Consensus 377 GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnkp~~R~d~~d~vy~ 454 (822)
T 3jux_A 377 GLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTHKPMIRKDHDDLVFR 454 (822)
T ss_dssp GHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCSSCCCCEECCCEEES
T ss_pred HHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCCCCcceeecCcEEEe
Confidence 111259999999998777776665433 222232222222112233445
Q ss_pred CCCcchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCC
Q 016375 236 PAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVA 313 (390)
Q Consensus 236 ~~~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~ 313 (390)
....+...+...+... .+.++||||++++.++.+++.|.+.|+++..+|++....++..+...++.| .|+|||+++
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmA 532 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMA 532 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTT
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchh
Confidence 5566666777766643 578999999999999999999999999999999986555555555566655 599999999
Q ss_pred CCCCCCC--------CCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccH-------HHHHHHHHHhCCc
Q 016375 314 SRGLDIP--------SVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL-------EWYLQIEKLIGML 375 (390)
Q Consensus 314 ~~G~d~~--------~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~ 375 (390)
++|+|++ +..+||.++.|.+...|.|++||+||.|++|.++.|++..+. +.+..+-+.+|.+
T Consensus 533 gRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~ 609 (822)
T 3jux_A 533 GRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIE 609 (822)
T ss_dssp TTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCC
T ss_pred hCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCC
Confidence 9999997 556999999999999999999999999999999999998773 3445555566643
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=226.72 Aligned_cols=212 Identities=31% Similarity=0.507 Sum_probs=175.2
Q ss_pred ccccCCcccC----CCCHHHHHHHHhcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCC
Q 016375 4 EKEVKTFKEL----GLRDELVEACENVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRT 79 (390)
Q Consensus 4 ~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~ 79 (390)
+.++.+|+++ ++++++.+.++.+|+..|+++|.++++.+.+++++++.+|||+|||+++++|++..+.. ..
T Consensus 21 p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-----~~ 95 (245)
T 3dkp_A 21 PDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ-----PA 95 (245)
T ss_dssp CCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS-----CC
T ss_pred CCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh-----cc
Confidence 3456778776 89999999999999999999999999999999999999999999999999999877642 12
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHH-HhcCCCCCEEEeCCchhHHHhhcCC-CccCCC
Q 016375 80 VPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT-LALGKRPHIVVATPGRLMDHLTNTK-GFSLGT 157 (390)
Q Consensus 80 ~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~t~~~l~~~~~~~~-~~~~~~ 157 (390)
..+.++||++|+++|+.|+.+.++++....++.+..+.++....... ......++|+|+||+.+...+.+.. ...+.+
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 25668999999999999999999999887778877776655433322 2234578999999999999887753 356888
Q ss_pred ccEEEEehhhhhcc---cccHHHHHHHHHhC-CCCccEEEEeecCchhHHHHHHHhcCCCeEEecCC
Q 016375 158 LKYLVLDEADRLLN---DDFEKSLDEILNVI-PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 220 (390)
Q Consensus 158 ~~~iIiDE~H~~~~---~~~~~~~~~~~~~~-~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~ 220 (390)
++++|+||+|++.+ ..+...+..++..+ +...+++++|||+++.+..+.+.++.++..+....
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99999999999887 46777787777665 44678999999999999999999999988876654
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=6e-26 Score=212.71 Aligned_cols=132 Identities=24% Similarity=0.262 Sum_probs=111.1
Q ss_pred hcCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 25 NVGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 25 ~~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
-+|+ .|++.|..+++.+.+|+ +..+.||+|||+++.+|++...+ .++.++|++||+.|+.|.++.+..
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---------~G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---------TGKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---------TCSCCEEEESSHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---------hCCCEEEEeCCHHHHHHHHHHHHH
Confidence 3799 89999999999999988 89999999999999999864433 355799999999999999999999
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchh-HHHhhcCC-----CccCC---CccEEEEehhhhhc
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLG---TLKYLVLDEADRLL 170 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l-~~~~~~~~-----~~~~~---~~~~iIiDE~H~~~ 170 (390)
+...+++++.++.|+.+...+.... .++|+|+||..| ++++...- ...++ .+.++|+||+|.++
T Consensus 143 l~~~lGLsv~~i~Gg~~~~~r~~ay--~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 143 VYRGLGLSVGVIQHASTPAERRKAY--LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHTTTCCEEECCTTCCHHHHHHHH--TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999999999988765544433 589999999999 77776542 23466 89999999999765
No 75
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=7.8e-27 Score=183.43 Aligned_cols=156 Identities=36% Similarity=0.562 Sum_probs=146.7
Q ss_pred ccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCc
Q 016375 225 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 304 (390)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 304 (390)
..++.+.+..++...+...+..++....+.++||||+++..++.+++.|...+..+..+||+++..+|..+++.|++|+.
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 34567778888888888999999998888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeec
Q 016375 305 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFS 380 (390)
Q Consensus 305 ~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
+|||+|+++++|+|+|++++||+++.|+++..|.|++||++|.|++|.+++|+.+.+...+..+++.++..+++.+
T Consensus 87 ~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp SEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred eEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887543
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=7.1e-26 Score=215.44 Aligned_cols=117 Identities=24% Similarity=0.330 Sum_probs=108.5
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecC-
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI- 330 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~- 330 (390)
.+.++||||+++..++.+++.|.+.++.+..+|++++..+|.++++.|++|+++|||+|+.+++|+|+|+++.||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHH
Q 016375 331 ----PTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIE 369 (390)
Q Consensus 331 ----~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~ 369 (390)
|.+..+|+|++||+||.+ +|.|++++++.+......+.
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 889999999999999985 79999999987765544443
No 77
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=1.8e-26 Score=181.91 Aligned_cols=158 Identities=32% Similarity=0.490 Sum_probs=141.3
Q ss_pred ccceeEEecCCCc-chhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCcc
Q 016375 227 TLKQQYRFVPAKY-KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305 (390)
Q Consensus 227 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 305 (390)
.+.+.+..++... +...+..++....+.++||||++...++.+++.|...+..+..+||+++..+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 3455666666666 888888888888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeeccccc
Q 016375 306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIEAT 384 (390)
Q Consensus 306 ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
|||+|+++++|+|+|++++||+++.|+++..|.|++||+||.|++|.|++++.+.+...+..+++.++..++.++.+..
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988876543
No 78
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.2e-26 Score=182.30 Aligned_cols=160 Identities=25% Similarity=0.510 Sum_probs=143.7
Q ss_pred ccccceeEEecCCCc-chhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCC
Q 016375 225 VDTLKQQYRFVPAKY-KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 303 (390)
Q Consensus 225 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 303 (390)
...+.+.+..++... +...+..++......++||||+++..++.+++.|...+..+..+||+++..+|..+++.|++|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 345677777777655 7788888888888889999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCCCCCCCCCEEEEecCC------CCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcce
Q 016375 304 CNILICTDVASRGLDIPSVDMVINYDIP------TNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYI 377 (390)
Q Consensus 304 ~~ilv~t~~~~~G~d~~~~~~vi~~~~~------~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 377 (390)
.+|||+|+++++|+|+|++++||+++.| .+...|.||+||+||.|+.|.+++++.+.+...+..+++.++..++
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 164 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIK 164 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCCE
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999 8899999999999999999999999999999999999999999998
Q ss_pred eeccccc
Q 016375 378 LFSIEAT 384 (390)
Q Consensus 378 ~~~~~~~ 384 (390)
+++....
T Consensus 165 ~~~~~~~ 171 (175)
T 2rb4_A 165 QLNAEDM 171 (175)
T ss_dssp EECSSCC
T ss_pred ccCCchh
Confidence 8876543
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=2.4e-26 Score=181.99 Aligned_cols=157 Identities=28% Similarity=0.431 Sum_probs=144.9
Q ss_pred cccceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCcc
Q 016375 226 DTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 305 (390)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 305 (390)
..+.+.+..++...+...+..++......++||||+++..++.+++.|...+..+..+||+++..+|..+++.|++|+.+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 35667777888888889999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccc-cHHHHHHHHHHhCCcceeeccc
Q 016375 306 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY-ELEWYLQIEKLIGMLYILFSIE 382 (390)
Q Consensus 306 ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
|||+|+++++|+|+|++++||+++.|+++..|.|++||++|.|+.|.+++|+++. +...+..+++.++..++++|.+
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 9999999999999999999999999999999999999999999999999999875 5688899999999999888744
No 80
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=3.3e-24 Score=203.89 Aligned_cols=116 Identities=22% Similarity=0.371 Sum_probs=108.1
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecC-
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI- 330 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~- 330 (390)
.+.++||||+++..++.+++.|.+.++++..+|++++..+|.++++.|++|+++|||+|+.+++|+|+|++++||+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCcchhhhccccccCCCCcceEEEEeccccHHHHHHH
Q 016375 331 ----PTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQI 368 (390)
Q Consensus 331 ----~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~ 368 (390)
|.+...|+|++||+||. ..|.|++++++.+......+
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 89999999999999998 68999999998776554443
No 81
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=2e-25 Score=182.86 Aligned_cols=155 Identities=35% Similarity=0.514 Sum_probs=143.1
Q ss_pred ceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEE
Q 016375 229 KQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 308 (390)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv 308 (390)
.+.....+...+...+..++....++++||||+++..++.+++.|.+.+..+..+||+++..+|..+++.|++|..+|||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 44555667788888999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeecccc
Q 016375 309 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIEA 383 (390)
Q Consensus 309 ~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
+|+++++|+|+|++++||+++.|+++..|.||+||+||.|++|.|++++++.+...+..+++.++..++..+...
T Consensus 87 aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 161 (212)
T 3eaq_A 87 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPT 161 (212)
T ss_dssp ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCC
T ss_pred ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999888776443
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=6.1e-26 Score=182.36 Aligned_cols=172 Identities=27% Similarity=0.434 Sum_probs=134.9
Q ss_pred HHhcCCCeEEecCCccccccccceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCC
Q 016375 207 RACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGH 286 (390)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 286 (390)
+.++.+|..+...........+.+.+..++...+...+..++... +.++||||+++..++.+++.|...++.+..+||+
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 345556666655555555567778888888888888888887764 4689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccc-cHHHH
Q 016375 287 MSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY-ELEWY 365 (390)
Q Consensus 287 ~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~-~~~~~ 365 (390)
++..+|..+++.|++|+.+|||+|+++++|+|+|+++.||+++.|+++..|.|++||+||.|++|.+++|+++. +...+
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976 67777
Q ss_pred HHHHHHhCCcceee
Q 016375 366 LQIEKLIGMLYILF 379 (390)
Q Consensus 366 ~~~~~~~~~~~~~~ 379 (390)
..+++.++.....+
T Consensus 168 ~~l~~~l~~~~~~~ 181 (191)
T 2p6n_A 168 MDLKALLLEAKQKV 181 (191)
T ss_dssp HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHccCcC
Confidence 78877765444333
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=8.2e-26 Score=180.91 Aligned_cols=158 Identities=34% Similarity=0.517 Sum_probs=130.1
Q ss_pred ccccccceeEEecCCCcchhHHHHHHHhh-CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhcc
Q 016375 223 STVDTLKQQYRFVPAKYKDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA 301 (390)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 301 (390)
....++.+.+..++...+...+..++... .+.++||||+++..++.+++.|...+..+..+||+++..+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 34456777888888888888888888876 57899999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeec
Q 016375 302 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFS 380 (390)
Q Consensus 302 ~~~~ilv~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
|+.+|||+|+++++|+|+|+++.||+++.|+++..|.|++||++|.|++|.|++++++.+...+..+.+.++...+.+|
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888865554443
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=2.2e-24 Score=184.71 Aligned_cols=155 Identities=35% Similarity=0.513 Sum_probs=141.2
Q ss_pred cceeEEecCCCcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEE
Q 016375 228 LKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307 (390)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~il 307 (390)
+.+.+..++...+...+..++....+.++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|..+||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 45566777888888999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeeccc
Q 016375 308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIE 382 (390)
Q Consensus 308 v~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
|+|+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.|++|+++.+...+..+++.++..++.++..
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988877544
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=9e-25 Score=180.87 Aligned_cols=168 Identities=21% Similarity=0.158 Sum_probs=118.5
Q ss_pred cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHH-HHHHHHH
Q 016375 26 VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ-ISEQFEA 104 (390)
Q Consensus 26 ~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q-~~~~~~~ 104 (390)
.+...|+++|.++++.+.+++++++.+|||+|||++++.++...+.+..... .+.++||++|+++|+.| |.+.+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~---~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKAS---EPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTT---CCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccccc---CCCcEEEEECHHHHHHHHHHHHHHH
Confidence 3445799999999999999999999999999999999988887766543221 46679999999999999 8888888
Q ss_pred hccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCC-----ccCCCccEEEEehhhhhcccccH-HHH
Q 016375 105 LGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-----FSLGTLKYLVLDEADRLLNDDFE-KSL 178 (390)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~-----~~~~~~~~iIiDE~H~~~~~~~~-~~~ 178 (390)
+... ++.+..+.|+.............++|+|+|++.+.+.+..... ..+.++++||+||+|++....+. ..+
T Consensus 106 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 106 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred Hhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 7654 5777777777654433333333589999999999988876432 44678899999999998775433 333
Q ss_pred HHHHHhC-------------CCCccEEEEeec
Q 016375 179 DEILNVI-------------PRMRQTYLFSAT 197 (390)
Q Consensus 179 ~~~~~~~-------------~~~~~~i~~saT 197 (390)
..+.... ....+++++|||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3333221 145689999998
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.85 E-value=2e-26 Score=182.44 Aligned_cols=154 Identities=37% Similarity=0.556 Sum_probs=139.7
Q ss_pred ceeEEecCC-CcchhHHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEE
Q 016375 229 KQQYRFVPA-KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNIL 307 (390)
Q Consensus 229 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~il 307 (390)
.+.+..++. ..+...+..++....+.++||||+++..++.+++.|...+..+..+||+++..+|..+++.|++|+.+||
T Consensus 5 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vL 84 (170)
T 2yjt_D 5 HQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 84 (170)
Confidence 344444555 5666777777777778899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCcceeeccc
Q 016375 308 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGMLYILFSIE 382 (390)
Q Consensus 308 v~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
|+|+++++|+|+|++++||+++.|+++..|.|++||+||.|++|.+++++.+.+...+..+++.++..++..+++
T Consensus 85 vaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (170)
T 2yjt_D 85 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVID 159 (170)
Confidence 999999999999999999999999999999999999999999999999999999999999999998888766554
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.90 E-value=2e-21 Score=182.15 Aligned_cols=314 Identities=14% Similarity=0.041 Sum_probs=197.2
Q ss_pred CCCCCchHHHhhHHhH----hcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHH
Q 016375 27 GWKTPSKIQAEAIPHA----LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (390)
Q Consensus 27 g~~~~~~~Q~~~~~~i----~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 102 (390)
|+ ++||+|.+++..+ ..++++++.+|||+|||+++++|++. .+.+++|++|+++|+.|+.+++
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------------~~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------------VKPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------------HCSEEEEEESSGGGHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------------CCCeEEEEcCCHHHHHHHHHHH
Confidence 45 7999999988754 46889999999999999999999886 2557999999999999999999
Q ss_pred HHhccCCCceEEEEecCCch---------------------------------HHH------------------HHhcCC
Q 016375 103 EALGSGISLRCAVLVGGVDM---------------------------------MQQ------------------TLALGK 131 (390)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~---------------------------------~~~------------------~~~~~~ 131 (390)
..+....++++..+.|..+. ... ......
T Consensus 68 ~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~ 147 (551)
T 3crv_A 68 TKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY 147 (551)
T ss_dssp TTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred HHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh
Confidence 88866666777776663321 000 011234
Q ss_pred CCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccc--------------------------------------
Q 016375 132 RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-------------------------------------- 173 (390)
Q Consensus 132 ~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-------------------------------------- 173 (390)
.++|+|+|+..|++...+..........++||||||++.+ -
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~ 226 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLRE 226 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred cCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999998876544311124678999999996544 1
Q ss_pred -----------------cHHHHHH----------------------------HH--------------------------
Q 016375 174 -----------------FEKSLDE----------------------------IL-------------------------- 182 (390)
Q Consensus 174 -----------------~~~~~~~----------------------------~~-------------------------- 182 (390)
+...+.. ++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~ 306 (551)
T 3crv_A 227 VVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISY 306 (551)
T ss_dssp SCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHH
T ss_pred HhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHH
Confidence 0000000 00
Q ss_pred --HhCCCC-ccEEEEeecCchhHHHHHHHhcCC-CeEE---ecCCccccccccceeEEe--cCCCcc------hhHHHHH
Q 016375 183 --NVIPRM-RQTYLFSATMTKKVKKLQRACLKN-PVKI---EAASKYSTVDTLKQQYRF--VPAKYK------DCYLVYI 247 (390)
Q Consensus 183 --~~~~~~-~~~i~~saT~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~ 247 (390)
..+... ..+|++|||+.+ ...+....... +... ......+. ..-...+.. ++.... ...+...
T Consensus 307 ~l~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~ 384 (551)
T 3crv_A 307 YLNLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADY 384 (551)
T ss_dssp HHGGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHH
T ss_pred HHHHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHH
Confidence 011222 568999999987 34444433222 1210 11111111 111111111 111111 1222222
Q ss_pred HH---hhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEe--CCCCCCCCCC--
Q 016375 248 LT---EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICT--DVASRGLDIP-- 320 (390)
Q Consensus 248 ~~---~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t--~~~~~G~d~~-- 320 (390)
+. ....+.++||++|....+.+.+ ..+.++..-..+++ +.+.++.|+.+.-.||+++ ..+++|+|+|
T Consensus 385 i~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~ 458 (551)
T 3crv_A 385 LLKIYFQAKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNN 458 (551)
T ss_dssp HHHHHHHCSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEET
T ss_pred HHHHHHhCCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccccccccc
Confidence 22 2356789999999999999987 23444433223333 4567777854344799998 6999999999
Q ss_pred -C--CCEEEEecCCCCcc------------------------------hhhhccccccCCCCcceEEEEeccccH
Q 016375 321 -S--VDMVINYDIPTNSK------------------------------DYIHRVGRTARAGRTGVAISLVNQYEL 362 (390)
Q Consensus 321 -~--~~~vi~~~~~~~~~------------------------------~~~Q~~GR~~R~~~~~~~i~~~~~~~~ 362 (390)
+ ++.||+.+.|.... ...|.+||+.|..++.-+++++++.-.
T Consensus 459 ~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~~ 533 (551)
T 3crv_A 459 DRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRFE 533 (551)
T ss_dssp TEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGGGG
T ss_pred CCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehhcc
Confidence 3 78899988763111 136899999999777777777776544
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=7.1e-23 Score=191.13 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=68.0
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEE--EeCCCCCCCCCCC----CCEE
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI--CTDVASRGLDIPS----VDMV 325 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv--~t~~~~~G~d~~~----~~~v 325 (390)
..+.++||++|...++.+++.+.. .+ ....+.. .++.++++.|+++. .|++ +|..+++|+|+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 567899999999999999988765 23 2333332 45788999998865 5777 7799999999997 7899
Q ss_pred EEecCCCCcc------------------------------hhhhccccccCCCCcceEEEEecccc
Q 016375 326 INYDIPTNSK------------------------------DYIHRVGRTARAGRTGVAISLVNQYE 361 (390)
Q Consensus 326 i~~~~~~~~~------------------------------~~~Q~~GR~~R~~~~~~~i~~~~~~~ 361 (390)
|+++.|.... ...|.+||+.|..++.-+++++++.-
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R~ 522 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSRY 522 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGGG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcccc
Confidence 9999884322 24799999999876666677776543
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.89 E-value=3.7e-23 Score=177.90 Aligned_cols=155 Identities=17% Similarity=0.121 Sum_probs=122.2
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCC
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 109 (390)
.|+++|.++++.+.++.+.++.+|||+|||.+++.++...+.. ...++||++|+++|+.||.+++++++...
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 7999999999999988889999999999999987766655432 34479999999999999999999997666
Q ss_pred CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCc
Q 016375 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189 (390)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~ 189 (390)
...+..+.++..... ......+|+|+|++.+.+... ..+.++++||+||+|++.. ..+..++..+....
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~----~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~ 253 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQPK----EWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSCG----GGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCC
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhHH----HHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCC
Confidence 667777777655432 223468999999987755321 2356789999999998764 35667777776778
Q ss_pred cEEEEeecCchhHH
Q 016375 190 QTYLFSATMTKKVK 203 (390)
Q Consensus 190 ~~i~~saT~~~~~~ 203 (390)
+++++||||++...
T Consensus 254 ~~l~lSATp~~~~~ 267 (282)
T 1rif_A 254 FKFGLSGSLRDGKA 267 (282)
T ss_dssp EEEEECSSCCTTST
T ss_pred eEEEEeCCCCCcch
Confidence 89999999976543
No 90
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.84 E-value=8.1e-20 Score=172.37 Aligned_cols=106 Identities=15% Similarity=0.253 Sum_probs=75.1
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEe--CCCCCCCCCCC--CCEEEE
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICT--DVASRGLDIPS--VDMVIN 327 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t--~~~~~G~d~~~--~~~vi~ 327 (390)
..+.++||++|....+.+++.++. .... ...+++..++.++++.|+ +...||+++ ..+++|+|+++ ++.||+
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI 522 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIIL 522 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEE
Confidence 467799999999999999988762 2222 444555678899999999 888899997 49999999987 789999
Q ss_pred ecCCCCcc-----------------------------hhhhccccccCCCCcceEEEEecccc
Q 016375 328 YDIPTNSK-----------------------------DYIHRVGRTARAGRTGVAISLVNQYE 361 (390)
Q Consensus 328 ~~~~~~~~-----------------------------~~~Q~~GR~~R~~~~~~~i~~~~~~~ 361 (390)
.+.|.... ...|.+||+.|..++.-+++++++.=
T Consensus 523 ~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~ 585 (620)
T 4a15_A 523 AGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA 585 (620)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGGG
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccch
Confidence 98874321 23799999999977777777777653
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.84 E-value=3.7e-20 Score=154.22 Aligned_cols=138 Identities=20% Similarity=0.170 Sum_probs=107.6
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCC
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 109 (390)
.++++|.+++..+.++.++++.+|||+|||.+++.++.. .+.+++|++|+++|+.||.+++.++
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~------------~~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE------------LSTPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH------------SCSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 689999999999999888999999999999987665543 2456999999999999999999885
Q ss_pred Cce-EEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCC
Q 016375 110 SLR-CAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 188 (390)
Q Consensus 110 ~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~ 188 (390)
+.. +..+.++... ..+|+|+|++.+....... ...+++||+||+|++....+. .+...++ .
T Consensus 157 ~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~ 218 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYV----QIAQMSI-A 218 (237)
T ss_dssp CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHH----HHHHTCC-C
T ss_pred CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChHHH----HHHHhcc-C
Confidence 356 6777766542 4789999999987755421 245899999999988766543 3445554 4
Q ss_pred ccEEEEeecCchh
Q 016375 189 RQTYLFSATMTKK 201 (390)
Q Consensus 189 ~~~i~~saT~~~~ 201 (390)
.+++++||||.+.
T Consensus 219 ~~~l~LSATp~r~ 231 (237)
T 2fz4_A 219 PFRLGLTATFERE 231 (237)
T ss_dssp SEEEEEEESCC--
T ss_pred CEEEEEecCCCCC
Confidence 5689999999764
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.83 E-value=7.5e-20 Score=152.70 Aligned_cols=162 Identities=20% Similarity=0.257 Sum_probs=117.2
Q ss_pred CCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 27 GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 27 g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
+...++++|.++++.+.+++++++.+|||+|||..+..+++........ ..+..++++.|++.++.|..+.+....
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHHHHHHHHHHh
Confidence 3346899999999999999999999999999998877777766554321 124479999999999999988887643
Q ss_pred c-CCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhh-cccccH-HHHHHHHH
Q 016375 107 S-GISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL-LNDDFE-KSLDEILN 183 (390)
Q Consensus 107 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~-~~~~~~-~~~~~~~~ 183 (390)
. ..+..+....... ......+++|+|+|++.+.+.+.. .+.++++||+||+|++ .+.++. ..+..+..
T Consensus 134 ~~~~~~~~g~~~~~~-----~~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 134 GEEPGKSCGYSVRFE-----SILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp TCCTTSSEEEEETTE-----EECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred ccccCceEEEeechh-----hccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 2 2233322211110 111124578999999999998875 3788999999999974 444444 45566666
Q ss_pred hCCCCccEEEEeecCchhH
Q 016375 184 VIPRMRQTYLFSATMTKKV 202 (390)
Q Consensus 184 ~~~~~~~~i~~saT~~~~~ 202 (390)
..+ ..|++++|||++...
T Consensus 205 ~~~-~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 205 AYP-EVRIVLMSATIDTSM 222 (235)
T ss_dssp HCT-TSEEEEEECSSCCHH
T ss_pred hCC-CCeEEEEecCCCHHH
Confidence 654 567999999998765
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.78 E-value=1.3e-18 Score=147.23 Aligned_cols=129 Identities=20% Similarity=0.265 Sum_probs=100.5
Q ss_pred cCCCcchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhc-CCceeeccCCCCHHHHHHHHHHhccC-Ccc-EEEE
Q 016375 235 VPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNL-GQRAIPISGHMSQSKRLGALNKFKAG-ECN-ILIC 309 (390)
Q Consensus 235 ~~~~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~-ilv~ 309 (390)
.....|...+..++... .+.++||||++...++.+.+.|... |+.+..++|.++..+|.++++.|+++ .++ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34456777777777766 7899999999999999999999985 99999999999999999999999998 677 6889
Q ss_pred eCCCCCCCCCCCCCEEEEecCCCCcchhhhccccccCCCCcceE--EEEeccccHH
Q 016375 310 TDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVA--ISLVNQYELE 363 (390)
Q Consensus 310 t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~--i~~~~~~~~~ 363 (390)
|.++++|+|++.+++||++++||++..+.|++||++|.|+.+.| +.++..+..+
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiE 227 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 227 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHH
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHH
Confidence 99999999999999999999999999999999999999987654 6667766543
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.77 E-value=2.2e-08 Score=94.62 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=90.7
Q ss_pred HHHHHHHhc-CCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHH
Q 016375 18 ELVEACENV-GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (390)
Q Consensus 18 ~~~~~l~~~-g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 96 (390)
.+...|... +-..-.+.|+.+++.+..++.+++.|++|+|||.+.. .++..+.+.. ...+.++++++||...+.
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~-~ll~~l~~~~----~~~~~~vll~APTg~AA~ 210 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQMA----DGERCRIRLAAPTGKAAA 210 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHH-HHHHHHHHTC----SSCCCCEEEEBSSHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHH-HHHHHHHHhh----hcCCCeEEEEeCChhHHH
Confidence 344455543 2222368999999999999999999999999996532 2333332211 014567999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHH
Q 016375 97 QISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK 176 (390)
Q Consensus 97 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~ 176 (390)
++.+.+.......++...... .... ... .-..++-.++... .+.... .....++++||||++ +.+ ..
T Consensus 211 ~L~e~~~~~~~~l~l~~~~~~-~~~~--~~~---Tih~ll~~~~~~~--~~~~~~-~~~l~~d~lIIDEAs-ml~---~~ 277 (608)
T 1w36_D 211 RLTESLGKALRQLPLTDEQKK-RIPE--DAS---TLHRLLGAQPGSQ--RLRHHA-GNPLHLDVLVVDEAS-MID---LP 277 (608)
T ss_dssp HHHHHHTHHHHHSSCCSCCCC-SCSC--CCB---TTTSCC-------------CT-TSCCSCSEEEECSGG-GCB---HH
T ss_pred HHHHHHHHHHhcCCCCHHHHh-ccch--hhh---hhHhhhccCCCch--HHHhcc-CCCCCCCEEEEechh-hCC---HH
Confidence 988887654433222100000 0000 000 0011111111110 011111 112368899999999 544 34
Q ss_pred HHHHHHHhCCCCccEEEEeec
Q 016375 177 SLDEILNVIPRMRQTYLFSAT 197 (390)
Q Consensus 177 ~~~~~~~~~~~~~~~i~~saT 197 (390)
.+..++..++...+++++.-.
T Consensus 278 ~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 278 MMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp HHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHhCCCCCEEEEEcch
Confidence 567778888888888887644
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.65 E-value=6.6e-08 Score=92.42 Aligned_cols=68 Identities=22% Similarity=0.177 Sum_probs=54.3
Q ss_pred CCchHHHhhHHhHhcCC-CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 30 TPSKIQAEAIPHALEGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~-~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
.|.+.|.+|+..++..+ -.+|.||+|||||.+....+. .+.+ .+.++|+++||+.-++++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~-~l~~--------~~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIIL-QAVK--------QGLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHH-HHHH--------TTCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHH-HHHh--------CCCeEEEEcCchHHHHHHHHHHHhcC
Confidence 47899999999987644 689999999999987654443 3333 46689999999999999999887653
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.63 E-value=3.5e-07 Score=86.93 Aligned_cols=70 Identities=20% Similarity=0.103 Sum_probs=55.4
Q ss_pred CCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 28 WKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 28 ~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
+..+.+.|.+++..+..+...+|.||+|+|||.+... ++..+.+. .+.++|+++|+..-++++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~-------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS-------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc-------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 3468999999999988878899999999999987543 33333321 4567999999999999999888664
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.62 E-value=3.3e-07 Score=88.99 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=56.2
Q ss_pred CCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 28 WKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 28 ~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
+..+.+.|.+++..+..+...+|.||+|+|||.+....+ ..+.+. .+.++|+++|++.-++++.+.+...+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 345789999999999887789999999999998754433 333332 35679999999999999999987753
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.56 E-value=5.8e-07 Score=84.06 Aligned_cols=126 Identities=13% Similarity=0.154 Sum_probs=78.8
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCC
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 109 (390)
.+.+.|.+++..+..++.+++.|++|+|||.+. ..++..+.. .+.++++++||...+....+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~~~------ 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--------LGLEVGLCAPTGKAARRLGEVTG------ 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHHT------
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--------cCCeEEEecCcHHHHHHhHhhhc------
Confidence 589999999999998899999999999999764 334444433 56779999999988776655431
Q ss_pred CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCc
Q 016375 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189 (390)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~ 189 (390)
.....++.-.. .. ++. +.. .......+++|||||++.+ + ...+..++..++...
T Consensus 254 -~~a~Tih~ll~-------------~~---~~~----~~~-~~~~~~~~dvlIIDEasml-~---~~~~~~Ll~~~~~~~ 307 (574)
T 3e1s_A 254 -RTASTVHRLLG-------------YG---PQG----FRH-NHLEPAPYDLLIVDEVSMM-G---DALMLSLLAAVPPGA 307 (574)
T ss_dssp -SCEEEHHHHTT-------------EE---TTE----ESC-SSSSCCSCSEEEECCGGGC-C---HHHHHHHHTTSCTTC
T ss_pred -ccHHHHHHHHc-------------CC---cch----hhh-hhcccccCCEEEEcCccCC-C---HHHHHHHHHhCcCCC
Confidence 11111110000 00 000 000 0112335789999999944 3 235666677777666
Q ss_pred cEEEEee
Q 016375 190 QTYLFSA 196 (390)
Q Consensus 190 ~~i~~sa 196 (390)
+++++.-
T Consensus 308 ~lilvGD 314 (574)
T 3e1s_A 308 RVLLVGD 314 (574)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 6666543
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.55 E-value=5.2e-07 Score=82.55 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=51.4
Q ss_pred HhcCCCCCchHHHhhHHhHhcC-----CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHH
Q 016375 24 ENVGWKTPSKIQAEAIPHALEG-----KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 98 (390)
Q Consensus 24 ~~~g~~~~~~~Q~~~~~~i~~~-----~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 98 (390)
.-+.|..|++.|++++..+... ..++|.|++|+|||.+. ..++..+... ....+++++|+...+..+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-------~~~~il~~a~T~~Aa~~l 90 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-------GETGIILAAPTHAAKKIL 90 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCCEEEEESSHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------CCceEEEecCcHHHHHHH
Confidence 3467888999999999977542 38999999999999754 4455555442 123689999998887766
Q ss_pred HHHH
Q 016375 99 SEQF 102 (390)
Q Consensus 99 ~~~~ 102 (390)
.+.+
T Consensus 91 ~~~~ 94 (459)
T 3upu_A 91 SKLS 94 (459)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 5554
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.52 E-value=9.6e-07 Score=85.68 Aligned_cols=70 Identities=21% Similarity=0.137 Sum_probs=55.2
Q ss_pred CCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
..+.+.|.+++..+..+...+|.||+|+|||.+... ++..+.+. .+.++|+++|+..-++++.+.+...+
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~-------~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-------GNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTT-------CSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHc-------CCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 457999999999998878899999999999987543 33333321 45679999999999999988886543
No 101
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.47 E-value=1.6e-06 Score=73.46 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=94.9
Q ss_pred cCCCcchhHHHHHHHhh--CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCC
Q 016375 235 VPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV 312 (390)
Q Consensus 235 ~~~~~~~~~~~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~ 312 (390)
.....|...+..++... .+.+++||++.....+.+.++|...+.....++|.....+. + -.++.+.+.+.|.+
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsa 179 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSE 179 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEEEEECC
Confidence 34677777777777654 57899999999999999999999999999999998554321 1 12455566666777
Q ss_pred CCCCCC-----CCCCCEEEEecCCCCcchh-hhccccccCCC----CcceEEEEeccccHHHHH
Q 016375 313 ASRGLD-----IPSVDMVINYDIPTNSKDY-IHRVGRTARAG----RTGVAISLVNQYELEWYL 366 (390)
Q Consensus 313 ~~~G~d-----~~~~~~vi~~~~~~~~~~~-~Q~~GR~~R~~----~~~~~i~~~~~~~~~~~~ 366 (390)
.+.|+| +..+++||.||..|++..- +|++-|++|.+ +...++.++..+..+...
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~ 243 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCR 243 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHH
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHH
Confidence 777776 6789999999999999985 99999999973 456889999988887654
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.34 E-value=3.7e-05 Score=73.77 Aligned_cols=82 Identities=18% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccC
Q 016375 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 108 (390)
..+.+.|.+++.. ....++|.|++|||||.+...-+...+.+.. .+..++|++++++..+.++.+.+......
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-----~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-----CSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-----CCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-----CChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 4689999999973 3567999999999999875544444333211 13457999999999999999999876332
Q ss_pred --CCceEEEEe
Q 016375 109 --ISLRCAVLV 117 (390)
Q Consensus 109 --~~~~~~~~~ 117 (390)
.++.+..++
T Consensus 81 ~~~~~~v~Tfh 91 (647)
T 3lfu_A 81 SQGGMWVGTFH 91 (647)
T ss_dssp CCTTCEEEEHH
T ss_pred ccCCcEEEcHH
Confidence 234444443
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.88 E-value=0.00024 Score=67.01 Aligned_cols=150 Identities=11% Similarity=0.067 Sum_probs=87.2
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCC
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 109 (390)
.|.|+|..++..+...+..++..+-|.|||......++..+... ++..++++.|+...+..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-------~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-------SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-------CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 58999999998876567799999999999987665444444321 45679999999999999888887765443
Q ss_pred C--ceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCC
Q 016375 110 S--LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187 (390)
Q Consensus 110 ~--~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~ 187 (390)
+ +......... ....+..+..+.+.+.+ -..+. -..++++|+||+|.+... ...+..+...+..
T Consensus 236 p~~~~~~~~~~~~----~~i~~~nGs~i~~~s~~--~~~lr------G~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~ 301 (592)
T 3cpe_A 236 PDFLQPGIVEWNK----GSIELDNGSSIGAYASS--PDAVR------GNSFAMIYIEDCAFIPNF--HDSWLAIQPVISS 301 (592)
T ss_dssp CTTTSCCEEEECS----SEEEETTSCEEEEEECC--HHHHH------HSCCSEEEEETGGGCTTH--HHHHHHHHHHHSS
T ss_pred hHhhccccccCCc----cEEEecCCCEEEEEeCC--CCCcc------CCCcceEEEehhccCCch--hHHHHHHHHHhcc
Confidence 2 1100000000 00112223344433221 11111 123679999999966442 2344444444432
Q ss_pred -CccEEEEeecCch
Q 016375 188 -MRQTYLFSATMTK 200 (390)
Q Consensus 188 -~~~~i~~saT~~~ 200 (390)
....+++..||..
T Consensus 302 ~~~~~ii~isTP~~ 315 (592)
T 3cpe_A 302 GRRSKIIITTTPNG 315 (592)
T ss_dssp SSCCEEEEEECCCT
T ss_pred CCCceEEEEeCCCC
Confidence 1224555556654
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.82 E-value=0.0002 Score=63.03 Aligned_cols=70 Identities=9% Similarity=-0.005 Sum_probs=54.4
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
.|.|+|+.++..+...+..++..+-+.|||.+.+..++..+.. .++..+++++|+...+..+.+.++.+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 6899999999887655668999999999998766555443332 156679999999999888777777654
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.56 E-value=0.00027 Score=62.99 Aligned_cols=107 Identities=19% Similarity=0.153 Sum_probs=62.6
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHH
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 126 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (390)
-.++.|++|+|||.... +.+ .....++++|+++++.+|.+.+...+..
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~----------~~~~~lVlTpT~~aa~~l~~kl~~~~~~------------------ 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRV----------NFEEDLILVPGRQAAEMIRRRANASGII------------------ 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHC----------CTTTCEEEESCHHHHHHHHHHHTTTSCC------------------
T ss_pred EEEEEcCCCCCHHHHHH----HHh----------ccCCeEEEeCCHHHHHHHHHHhhhcCcc------------------
Confidence 47899999999997642 221 1134699999999999988887442110
Q ss_pred HhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeec
Q 016375 127 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 197 (390)
Q Consensus 127 ~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT 197 (390)
.....-+.|.++++-.. .......++++||||+- +..... +..++...+. .+++++.-+
T Consensus 211 ----~~~~~~V~T~dsfL~~~---~~~~~~~~d~liiDE~s-m~~~~~---l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ----VATKDNVRTVDSFLMNY---GKGARCQFKRLFIDEGL-MLHTGC---VNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ----CCCTTTEEEHHHHHHTT---TSSCCCCCSEEEEETGG-GSCHHH---HHHHHHHTTC-SEEEEEECT
T ss_pred ----ccccceEEEeHHhhcCC---CCCCCCcCCEEEEeCcc-cCCHHH---HHHHHHhCCC-CEEEEecCc
Confidence 00123356666654321 11122347899999998 444332 3334444444 445554433
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.54 E-value=0.00054 Score=53.93 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=26.3
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 92 (390)
+.-.++.+|+|+|||..++. ++..+.. .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~-~~~~~~~--------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS-FVEIYKL--------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH-HHHHHHH--------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHH-HHHHHHH--------CCCeEEEEeecc
Confidence 45678999999999976543 3333322 456788888873
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.42 E-value=0.00089 Score=52.51 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
++.+++.+|+|+|||..+
T Consensus 38 g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp CCEEEECCSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 678999999999999754
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.40 E-value=0.00062 Score=55.12 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=54.7
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (390)
+.-.++.+++|+|||..++. ++..+.. .+.+++++.|...-. ....+....++.
T Consensus 12 G~i~litG~mGsGKTT~ll~-~~~r~~~--------~g~kVli~~~~~d~r-----~~~~i~srlG~~------------ 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR-RLHRLEY--------ADVKYLVFKPKIDTR-----SIRNIQSRTGTS------------ 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH-HHHHHHH--------TTCCEEEEEECCCGG-----GCSSCCCCCCCS------------
T ss_pred cEEEEEECCCCCcHHHHHHH-HHHHHHh--------cCCEEEEEEeccCch-----HHHHHHHhcCCC------------
Confidence 44588889999999976543 3333333 466788887754210 000111111111
Q ss_pred HHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHH
Q 016375 125 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN 183 (390)
Q Consensus 125 ~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~ 183 (390)
...+-+.+.+.+...+.... .-..+++|||||++.+.. ...+.+..+.+
T Consensus 66 -------~~~~~~~~~~~i~~~i~~~~--~~~~~dvViIDEaQ~l~~-~~ve~l~~L~~ 114 (223)
T 2b8t_A 66 -------LPSVEVESAPEILNYIMSNS--FNDETKVIGIDEVQFFDD-RICEVANILAE 114 (223)
T ss_dssp -------SCCEEESSTHHHHHHHHSTT--SCTTCCEEEECSGGGSCT-HHHHHHHHHHH
T ss_pred -------ccccccCCHHHHHHHHHHHh--hCCCCCEEEEecCccCcH-HHHHHHHHHHh
Confidence 01233455556666555421 234578999999995433 33334444443
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.40 E-value=0.00058 Score=53.90 Aligned_cols=39 Identities=15% Similarity=0.019 Sum_probs=27.1
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 92 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 92 (390)
+.-.++.+|+|+|||..++- ++..+.. .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~-~a~r~~~--------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIR-RIRRAKI--------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHH-HHHHHHH--------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHHH--------CCCEEEEEEecc
Confidence 44578899999999976543 3333333 577899998863
No 110
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0018 Score=55.47 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=18.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
+.++++.||||+|||.+. -.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 457999999999999764 33444443
No 111
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.34 E-value=0.00043 Score=66.56 Aligned_cols=82 Identities=18% Similarity=0.104 Sum_probs=59.3
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccC-
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG- 108 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~- 108 (390)
.+++-|++++... ..+++|.|++|||||.+...-+...+.+.. .+...+|+++.|+..+.++.+.+......
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~ 74 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLGRK 74 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSCTT
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHcCcc
Confidence 4789999999763 568999999999999876554544443321 13456999999999999999999876432
Q ss_pred --CCceEEEEec
Q 016375 109 --ISLRCAVLVG 118 (390)
Q Consensus 109 --~~~~~~~~~~ 118 (390)
.++.+.++++
T Consensus 75 ~~~~~~v~Tfhs 86 (673)
T 1uaa_A 75 EARGLMISTFHT 86 (673)
T ss_dssp TTTTSEEEEHHH
T ss_pred cccCCEEEeHHH
Confidence 2355555444
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.27 E-value=0.00086 Score=53.46 Aligned_cols=39 Identities=15% Similarity=0.003 Sum_probs=26.2
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 93 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 93 (390)
.-.++.+++|+|||..++-. +..+.. .+.+++++.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~-a~r~~~--------~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRR-VRRTQF--------AKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHH-HHHHHH--------TTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHH-HHHHHH--------CCCEEEEEEeccC
Confidence 34678999999999765443 333333 5778999998754
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.22 E-value=0.00026 Score=53.55 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=16.4
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
.++.+++.+|+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999753
No 114
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.12 E-value=0.0032 Score=50.07 Aligned_cols=40 Identities=18% Similarity=0.036 Sum_probs=26.3
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 93 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 93 (390)
|.-.++.+++|+|||...+-. +..+.. .+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~-~~r~~~--------~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRR-LRRGIY--------AKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHH--------TTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHH-HHHHHH--------cCCceEEEEeccC
Confidence 445788999999999754433 333333 4567899988654
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.09 E-value=0.0022 Score=55.63 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+.++++.||+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 357999999999999754
No 116
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.08 E-value=0.002 Score=56.02 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=25.3
Q ss_pred CchHHHhhHHhHhc----C---CCEEEEcCCCCchhHHhH
Q 016375 31 PSKIQAEAIPHALE----G---KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 31 ~~~~Q~~~~~~i~~----~---~~~li~~~tG~GKT~~~~ 63 (390)
++|+|.+++..+.+ + +..++.||+|+|||..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 57888888876653 3 248999999999997654
No 117
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.02 E-value=0.0015 Score=63.24 Aligned_cols=70 Identities=26% Similarity=0.276 Sum_probs=53.3
Q ss_pred CCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 29 KTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 29 ~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
..|.+.|++++.+. ..+++|.|++|||||.+...-+...+.+.. .+...+|+++.|+..+.++.+++...
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-----~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 46899999999763 468999999999999875544444443211 13457999999999999999888775
No 118
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.93 E-value=0.018 Score=46.46 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=23.7
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
....+|++||+|.+... ....+..++...+....+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999976543 2344555555555544444444
No 119
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.91 E-value=0.013 Score=49.30 Aligned_cols=18 Identities=28% Similarity=0.170 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
.++++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999997643
No 120
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.90 E-value=0.0017 Score=50.93 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=25.7
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCC
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT 91 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~ 91 (390)
++-.++.+|+|+|||.-.+- .+..... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~-~i~n~~~--------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMR-RVRRFQI--------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHH-HHHHHHH--------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHH-HHHHHHH--------cCCeEEEEccc
Confidence 45688999999999965433 3333322 45678888876
No 121
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.85 E-value=0.0025 Score=51.35 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=27.4
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 93 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 93 (390)
+.-.++.+++|+|||..++-.+ ..+.. .+.+++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~-~r~~~--------~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRV-RRFQI--------AQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH-HHHHT--------TTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHH-HHHHH--------CCCeEEEEeecCC
Confidence 4567889999999997644333 33322 5777899888653
No 122
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.81 E-value=0.0076 Score=54.51 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.++++.||+|+|||..+
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999754
No 123
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.71 E-value=0.015 Score=49.25 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=29.2
Q ss_pred cCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhH--hcCCCEEEEcCCCCchhHHh
Q 016375 7 VKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHA--LEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i--~~~~~~li~~~tG~GKT~~~ 62 (390)
.-+|+++.-.++..+.+...-...+ ...+.+... ....++++.||+|+|||..+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPL--KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHH--HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHh--hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3456666555555555543211000 011222222 34567999999999999754
No 124
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.67 E-value=0.0066 Score=49.82 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+++.||+|+|||..+
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999754
No 125
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.58 E-value=0.014 Score=50.37 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=23.0
Q ss_pred CccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEE
Q 016375 157 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYL 193 (390)
Q Consensus 157 ~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~ 193 (390)
...++++||+|.+........+..+++..+....+++
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~ 141 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII 141 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 5789999999977623334455555555444454444
No 126
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.48 E-value=0.0041 Score=63.90 Aligned_cols=71 Identities=21% Similarity=0.228 Sum_probs=53.8
Q ss_pred CCchHHHhhHHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 30 TPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.+++-|.+++..- +++++|.|+.|||||.+...-++..+... .......++|++++|+..+.++.+.+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~---~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAE---ENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCS---SSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcC---CCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 6899999999764 67999999999999987544444443321 11224567999999999999999888763
No 127
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.45 E-value=0.0073 Score=45.17 Aligned_cols=20 Identities=10% Similarity=-0.047 Sum_probs=16.4
Q ss_pred hcCCCEEEEcCCCCchhHHh
Q 016375 43 LEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~ 62 (390)
....++++.+++|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 34578999999999999753
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.40 E-value=0.019 Score=50.80 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=17.5
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHH
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQAL 70 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~ 70 (390)
+.+++.||+|+|||..+. .+...+
T Consensus 46 ~~vll~G~~G~GKT~la~-~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK-YIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHHH-HHHHHH
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHH
Confidence 469999999999997643 344333
No 129
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.38 E-value=0.011 Score=44.37 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
.+.++++.+|+|+|||..+
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 4568999999999999764
No 130
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.37 E-value=0.017 Score=46.01 Aligned_cols=17 Identities=35% Similarity=0.266 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.++++.+|+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999764
No 131
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.36 E-value=0.032 Score=49.35 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+.++++.||+|+|||..+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999764
No 132
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.32 E-value=0.045 Score=48.96 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=65.7
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEc-C-CHHHHHHHHHHHHHhccCCCceEEEEecCCchHH
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLS-P-TRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 124 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~-P-~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (390)
.+++.+++|+|||.++.. +...+.. .+++++++. + .+.-+ .+.+..++...++.+........
T Consensus 99 vI~lvG~~GsGKTTt~~k-LA~~l~~--------~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~d--- 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGK-LAYFYKK--------RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQN--- 163 (433)
T ss_dssp EEEECCCTTSCHHHHHHH-HHHHHHH--------TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCSC---
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHH--------cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccCC---
Confidence 478889999999976543 2223322 455566654 3 22222 33444444443444322111111
Q ss_pred HHHhcCCCCCEEEeCCchhH-HHhhcCCCccCCCccEEEEehhhhhc---ccccHHHHHHHHHhCCCCccEEEEeecCch
Q 016375 125 QTLALGKRPHIVVATPGRLM-DHLTNTKGFSLGTLKYLVLDEADRLL---NDDFEKSLDEILNVIPRMRQTYLFSATMTK 200 (390)
Q Consensus 125 ~~~~~~~~~~i~i~t~~~l~-~~~~~~~~~~~~~~~~iIiDE~H~~~---~~~~~~~~~~~~~~~~~~~~~i~~saT~~~ 200 (390)
|..+. ..+.. ....++++||+|++-+.. +..+...+..+.....+..-++.++|+...
T Consensus 164 ---------------p~~i~~~al~~---a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq 225 (433)
T 3kl4_A 164 ---------------PIEIAKKGVDI---FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ 225 (433)
T ss_dssp ---------------HHHHHHHHHHH---TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG
T ss_pred ---------------HHHHHHHHHHH---HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch
Confidence 11111 11221 113468899999997543 233445555555555555556777887655
Q ss_pred hHHHHHHH
Q 016375 201 KVKKLQRA 208 (390)
Q Consensus 201 ~~~~~~~~ 208 (390)
........
T Consensus 226 ~a~~~a~~ 233 (433)
T 3kl4_A 226 KAYDLASR 233 (433)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHH
Confidence 54444433
No 133
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.30 E-value=0.019 Score=44.74 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
..++++.||+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357999999999999764
No 134
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.27 E-value=0.0076 Score=52.11 Aligned_cols=54 Identities=9% Similarity=0.044 Sum_probs=28.8
Q ss_pred ccCCcccCCCCHHHHHHHHhcCCCCCchHHH-hhHHh-HhcCCCEEEEcCCCCchhHHh
Q 016375 6 EVKTFKELGLRDELVEACENVGWKTPSKIQA-EAIPH-ALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~-~~~~~-i~~~~~~li~~~tG~GKT~~~ 62 (390)
+-.+|+++.-.++..+.|+..-. .+... +.+.. ....+++++.||+|+|||..+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34457777655666655553211 01100 00001 112357999999999999764
No 135
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.26 E-value=0.03 Score=48.92 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=25.9
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecC
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 198 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 198 (390)
....++++||+|.+.... ...+...++..+....+++.+..+
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEeCch
Confidence 346799999999765433 344555566655555455544433
No 136
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.049 Score=48.03 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=30.6
Q ss_pred ccCCcccCCCCHHHHHHHHhc---CCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHh
Q 016375 6 EVKTFKELGLRDELVEACENV---GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~ 62 (390)
+--+|++++=-++..+.|+.. ++..|.-++.-. +...+.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 345677775444444444432 232222222211 223468999999999999764
No 137
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.17 E-value=0.011 Score=50.58 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.++++.||+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36999999999999764
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.13 E-value=0.032 Score=49.36 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
++.+++.||+|+|||..+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999754
No 139
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.12 E-value=0.13 Score=40.08 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.++++.||+|+|||..+
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999764
No 140
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.06 E-value=0.014 Score=49.94 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
.++.+++.||+|+|||..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 3567999999999999764
No 141
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.01 E-value=0.043 Score=46.82 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=24.3
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
....++||||+|.+..... ..+...++.-+....+++.|
T Consensus 81 ~~~kvviIdead~lt~~a~-naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAA-NAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHHH-HHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHHH-HHHHHHHhCCCCCeEEEEEE
Confidence 4578999999997765432 34555555555555444444
No 142
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.00 E-value=0.049 Score=46.92 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=23.8
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
....++|+||+|.+.... ...+...++..+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEe
Confidence 456799999999765433 334555555555555444443
No 143
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.92 E-value=0.097 Score=41.02 Aligned_cols=36 Identities=22% Similarity=0.066 Sum_probs=27.7
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEc
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLS 89 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 89 (390)
...+++..++|.|||.+++..++..+- .|.+|+++-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g---------~G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG---------HGKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH---------TTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH---------CCCeEEEEE
Confidence 457999999999999887665555543 577888884
No 144
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.90 E-value=0.016 Score=51.46 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=14.2
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.++|.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999754
No 145
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.86 E-value=0.1 Score=46.67 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=30.9
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEc-C-CHHHHHHHHHHHHHhccCCCceE
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLS-P-TRELAIQISEQFEALGSGISLRC 113 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~-P-~~~l~~q~~~~~~~~~~~~~~~~ 113 (390)
.+++.+++|+|||.++.. +...+.+ .+++++++. + .+.- ..+.++.++...++.+
T Consensus 102 vIlivG~~G~GKTTt~~k-LA~~l~~--------~G~kVllv~~D~~R~a---a~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAK-LARYFQK--------RGYKVGVVCSDTWRPG---AYHQLRQLLDRYHIEV 158 (443)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHHT--------TTCCEEEEECCCSSTH---HHHHHHHHHGGGTCEE
T ss_pred EEEEECcCCCCHHHHHHH-HHHHHHH--------CCCeEEEEeCCCcchh---HHHHHHHHHHhcCCcE
Confidence 488899999999987543 3333332 455566655 2 2222 2344555554444544
No 146
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.057 Score=48.22 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
.+.+++.||+|+|||+.+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999764
No 147
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.80 E-value=0.031 Score=48.54 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 47999999999999764
No 148
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.76 E-value=0.02 Score=49.34 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=29.3
Q ss_pred ccCCcccCCCCHHHHHHHHhc---CCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHh
Q 016375 6 EVKTFKELGLRDELVEACENV---GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~ 62 (390)
+-.+|+++.=.++..+.|+.. .+..+..++ ......+.+++.||+|+|||..+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC----TTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh----CCCCCCceEEEECCCCccHHHHH
Confidence 445677776555565555432 111111000 01112367999999999999764
No 149
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.67 E-value=0.014 Score=52.82 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.7
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36999999999999764
No 150
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.62 E-value=0.13 Score=44.96 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
+++++.||+|+|||..+
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 57999999999999764
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.58 E-value=0.029 Score=46.12 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=32.8
Q ss_pred hcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 43 LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
..+..+++.+|+|+|||..++..+...+ . .+..++++..... ..+..+.+..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~-~--------~~~~v~~~~~e~~-~~~~~~~~~~~ 73 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGL-K--------MGEPGIYVALEEH-PVQVRQNMAQF 73 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHH-H--------TTCCEEEEESSSC-HHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-h--------cCCeEEEEEccCC-HHHHHHHHHHc
Confidence 3567799999999999976544333332 2 3445777765433 35555555443
No 152
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.55 E-value=0.045 Score=51.57 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=68.9
Q ss_pred CCchHHHhhHHhHhc--CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhcc
Q 016375 30 TPSKIQAEAIPHALE--GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (390)
Q Consensus 30 ~~~~~Q~~~~~~i~~--~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 107 (390)
.++..|.+++..+.+ ...+++.|+-|.|||.+.-+ ++..+ . ..++|.+|+..=+....+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~----------~-~~~~vtAP~~~a~~~l~~~~~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRI----------A-GRAIVTAPAKASTDVLAQFAGE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHS----------S-SCEEEECSSCCSCHHHHHHHGG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHH----------H-hCcEEECCCHHHHHHHHHHhhC---
Confidence 467899999998886 34689999999999954333 33322 1 2368999987765543332211
Q ss_pred CCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCC
Q 016375 108 GISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR 187 (390)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~ 187 (390)
.+-+..|+.+.. ...+.+++|||||=.+ . ...+..++...+
T Consensus 240 --------------------------~i~~~~Pd~~~~--------~~~~~dlliVDEAAaI-p---~pll~~ll~~~~- 280 (671)
T 2zpa_A 240 --------------------------KFRFIAPDALLA--------SDEQADWLVVDEAAAI-P---APLLHQLVSRFP- 280 (671)
T ss_dssp --------------------------GCCBCCHHHHHH--------SCCCCSEEEEETGGGS-C---HHHHHHHHTTSS-
T ss_pred --------------------------CeEEeCchhhhh--------CcccCCEEEEEchhcC-C---HHHHHHHHhhCC-
Confidence 022234443322 1234789999999833 3 334555555332
Q ss_pred CccEEEEeecCch
Q 016375 188 MRQTYLFSATMTK 200 (390)
Q Consensus 188 ~~~~i~~saT~~~ 200 (390)
.+++|.|...
T Consensus 281 ---~v~~~tTv~G 290 (671)
T 2zpa_A 281 ---RTLLTTTVQG 290 (671)
T ss_dssp ---EEEEEEEBSS
T ss_pred ---eEEEEecCCc
Confidence 5777777543
No 153
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.53 E-value=0.052 Score=47.44 Aligned_cols=43 Identities=16% Similarity=0.324 Sum_probs=27.7
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEeecCc
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 199 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 199 (390)
....++|+||+|. .+......+...++..+....+++.|..+.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 4578999999997 454445566666666666555555554443
No 154
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.43 E-value=0.21 Score=41.33 Aligned_cols=18 Identities=33% Similarity=0.268 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
..++++.||+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999764
No 155
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.41 E-value=0.22 Score=40.38 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=14.0
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+++.||+|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 156
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.40 E-value=0.04 Score=49.89 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
+++++.||+|+|||..+
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999764
No 157
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.38 E-value=0.06 Score=47.82 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
..++++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999764
No 158
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.33 E-value=0.047 Score=52.94 Aligned_cols=81 Identities=11% Similarity=0.088 Sum_probs=68.2
Q ss_pred CCCceEEEecchhHHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CCCCCCCCCCCCEEE
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMVI 326 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~~~G~d~~~~~~vi 326 (390)
.+.++++.+|+..-+.+..+.+.+. ++++..++|+++..++...++.+.+|+.+|+|+|+ .+...+++.+++.||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 4678999999999888888777654 78899999999999999999999999999999997 444567788899998
Q ss_pred EecCCC
Q 016375 327 NYDIPT 332 (390)
Q Consensus 327 ~~~~~~ 332 (390)
+.+...
T Consensus 496 IDEaHr 501 (780)
T 1gm5_A 496 IDEQHR 501 (780)
T ss_dssp EESCCC
T ss_pred ecccch
Confidence 876643
No 159
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.28 E-value=0.095 Score=44.96 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=22.8
Q ss_pred CccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 157 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 157 ~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
...+|||||+|.+.... ...+...++..+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36799999999765432 233445555555555455444
No 160
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.26 E-value=0.035 Score=50.79 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=26.8
Q ss_pred ccEEEEehhhhhcccc----------cHHHHHHHHHhCCCCccEEEEeecCch
Q 016375 158 LKYLVLDEADRLLNDD----------FEKSLDEILNVIPRMRQTYLFSATMTK 200 (390)
Q Consensus 158 ~~~iIiDE~H~~~~~~----------~~~~~~~~~~~~~~~~~~i~~saT~~~ 200 (390)
..+|++||+|.+.... ....+...++.......++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 5689999999776521 112344444555555567888887654
No 161
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.03 E-value=0.25 Score=39.92 Aligned_cols=22 Identities=23% Similarity=0.087 Sum_probs=17.4
Q ss_pred HhcCCCEEEEcCCCCchhHHhH
Q 016375 42 ALEGKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~~ 63 (390)
+..+..+++.+|+|+|||..+.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHH
Confidence 3456779999999999997644
No 162
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.93 E-value=0.26 Score=43.25 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=22.4
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEE
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 194 (390)
.....++||||+|.+.... ...+...++..+....+++.
T Consensus 117 ~~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~ 155 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (373)
T ss_dssp SSSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEE
T ss_pred cCCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEE
Confidence 3456799999999765433 33444455544444433333
No 163
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.91 E-value=0.12 Score=44.87 Aligned_cols=39 Identities=21% Similarity=0.414 Sum_probs=25.3
Q ss_pred CCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEEe
Q 016375 156 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 195 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 195 (390)
....++|+||+|.+.... ...+...++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 347899999999765433 345566666666665555444
No 164
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.86 E-value=0.066 Score=43.82 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=17.6
Q ss_pred hcCCCEEEEcCCCCchhHHhHH
Q 016375 43 LEGKDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~~~ 64 (390)
..+.-+.+.+|+|+|||..+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHH
Confidence 3467799999999999976543
No 165
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.79 E-value=0.037 Score=45.60 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=18.5
Q ss_pred hHhcCCCEEEEcCCCCchhHHhH
Q 016375 41 HALEGKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 41 ~i~~~~~~li~~~tG~GKT~~~~ 63 (390)
.+..|.-+.+.+|+|+|||..+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHH
Confidence 44567889999999999997644
No 166
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.79 E-value=0.19 Score=46.36 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=24.6
Q ss_pred CCccEEEEehhhhhccccc--HHHHHHHHHhCCCCccEEEEeecC
Q 016375 156 GTLKYLVLDEADRLLNDDF--EKSLDEILNVIPRMRQTYLFSATM 198 (390)
Q Consensus 156 ~~~~~iIiDE~H~~~~~~~--~~~~~~~~~~~~~~~~~i~~saT~ 198 (390)
....+|+|||+|.+..... ...+..++... ...+++++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 3467999999998766332 13344444432 23477777664
No 167
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.77 E-value=0.045 Score=52.97 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=29.7
Q ss_pred CCcccCCCCHHHHHHHHhc---CCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHh
Q 016375 8 KTFKELGLRDELVEACENV---GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~---g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~ 62 (390)
-+|++++..++..+.|+.. .+..+..++.- .+...+.+++.+|+|+|||+.+
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~---g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS---CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEecCCCCCchHHH
Confidence 3466666666676666653 22212111110 1122457999999999999754
No 168
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.72 E-value=0.074 Score=45.76 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.++++.||+|+|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 67999999999999764
No 169
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.45 E-value=0.7 Score=41.04 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=13.9
Q ss_pred CCEEE--EcCCCCchhHHh
Q 016375 46 KDLIG--LAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li--~~~tG~GKT~~~ 62 (390)
..++| .|++|+|||..+
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35778 899999999764
No 170
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.18 E-value=0.025 Score=50.55 Aligned_cols=56 Identities=25% Similarity=0.287 Sum_probs=34.7
Q ss_pred ccccCCcccCCCCHHHHHHHHhc---CCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHh
Q 016375 4 EKEVKTFKELGLRDELVEACENV---GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~ 62 (390)
..+--+|++++-.++..+.|+.. .+..+.-++...+ ...+.+++.||+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 34566788887666666655542 2333333332221 23468999999999999764
No 171
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.09 E-value=0.2 Score=43.55 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=27.0
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
+.-+++.+++|+|||..++..+.. +.. .+..++++......
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~-~~~--------~g~~vlyi~~E~~~ 101 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN-AQA--------AGGIAAFIDAEHAL 101 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH-HHH--------TTCCEEEEESSCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHh--------CCCeEEEEECCCCc
Confidence 466999999999999765543333 322 35567777765433
No 172
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.82 E-value=0.085 Score=45.18 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=14.2
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
++++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 6999999999999764
No 173
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.58 E-value=0.11 Score=50.31 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
+.+++.+|+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999754
No 174
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.25 E-value=0.83 Score=41.45 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
+.+++.+|+|+|||..+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999764
No 175
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.19 E-value=0.24 Score=44.29 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=65.1
Q ss_pred CCCceEEEecchhHHHHHHHHHHh---cCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CCC---CCCCCCCCCE
Q 016375 252 SASSTMVFTRTCDATRLLALMLRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VAS---RGLDIPSVDM 324 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~~---~G~d~~~~~~ 324 (390)
.+.+++|.+|++..+.+.++.++. .++.+..++|+.+..++...++.+.+|+.+|+|+|+ .+. .-++..+++.
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 577899999999999999999998 477999999999998888888888889999999997 221 1145567888
Q ss_pred EEEecC
Q 016375 325 VINYDI 330 (390)
Q Consensus 325 vi~~~~ 330 (390)
+|+.+.
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 887665
No 176
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.17 E-value=0.17 Score=46.99 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+++.+|+|+|||..+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999754
No 177
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.17 E-value=0.28 Score=52.28 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=29.9
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
.++.+++.+|+|+|||..+...+.+.. + .+.+++++.....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~-~--------~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R--------EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-T--------TTCCEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H--------cCCcEEEEEccccc
Confidence 467899999999999987654444332 2 46678888876444
No 178
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.90 E-value=0.12 Score=42.34 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=33.5
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.+.-+++.|++|+|||..++-.+.+.+.+ .+..+++++-... ..+..+.+...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~--------~~~~v~~~s~E~~-~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE--------YGEPGVFVTLEER-ARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH--------HCCCEEEEESSSC-HHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCCceeecccCC-HHHHHHHHHHc
Confidence 45679999999999997655544444433 2445777765433 45555555443
No 179
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.78 E-value=0.96 Score=42.47 Aligned_cols=124 Identities=13% Similarity=0.096 Sum_probs=82.3
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHh--ccCCccEEEEeC-CCC----------CCCC
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF--KAGECNILICTD-VAS----------RGLD 318 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f--~~~~~~ilv~t~-~~~----------~G~d 318 (390)
..+.+||.+|....+.+..+.|.+.++.+..++++.+..++..++..+ ..+..+|+++|+ .+. ...+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 356899999999999999999999999999999999999988888888 468899999997 221 1123
Q ss_pred CCCCCEEEEecCC----CC--cchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCc
Q 016375 319 IPSVDMVINYDIP----TN--SKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGML 375 (390)
Q Consensus 319 ~~~~~~vi~~~~~----~~--~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 375 (390)
..+++.+|+.+.. |. ...-...++...+...+..++.+-.--.......+.+.++.+
T Consensus 163 ~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~ 225 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIE 225 (591)
T ss_dssp TTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCC
T ss_pred ccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCC
Confidence 4466777765543 22 222223344333322233444444444445556666666654
No 180
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=92.73 E-value=2.1 Score=32.28 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=54.3
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.|+++.-+..+++.+...+ +.+..++|+.....+... ......|+|+|. .+. ..+++.
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~----~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gld~~ 102 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLG----YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA--RGIDIE 102 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--TTCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCchh
Confidence 45579999999999999999988764 788889998766554332 245788999993 122 246777
Q ss_pred CccEEEEehh
Q 016375 157 TLKYLVLDEA 166 (390)
Q Consensus 157 ~~~~iIiDE~ 166 (390)
+.++||.-+.
T Consensus 103 ~~~~Vi~~~~ 112 (163)
T 2hjv_A 103 NISLVINYDL 112 (163)
T ss_dssp CCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 8888886443
No 181
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.49 E-value=0.15 Score=40.60 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=28.5
Q ss_pred CCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHH
Q 016375 28 WKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 28 ~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~ 61 (390)
+..-+..|..+++.+..|..+.+.+|.|+|||+.
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 4445667788899998999999999999999965
No 182
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.30 E-value=0.28 Score=42.12 Aligned_cols=62 Identities=15% Similarity=-0.038 Sum_probs=32.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhc---CCCCCC----ceEEEEcCCHHH-HHHHHHHHHHhc
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAEN---QRTVPA----FFACVLSPTREL-AIQISEQFEALG 106 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~---~~~~~~----~~~lil~P~~~l-~~q~~~~~~~~~ 106 (390)
+.-++|.+++|+|||..++..+.......... .....+ ..++++.-...+ ..++.+.++.++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g 167 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAG 167 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcC
Confidence 34689999999999976544333221110000 000012 578888766543 445555555543
No 183
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.28 E-value=0.081 Score=47.43 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=32.5
Q ss_pred ccccCCcccCCCCHHHHHHHHhc---CCCCCchHHHhhHHhH--hcCCCEEEEcCCCCchhHHh
Q 016375 4 EKEVKTFKELGLRDELVEACENV---GWKTPSKIQAEAIPHA--LEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~Q~~~~~~i--~~~~~~li~~~tG~GKT~~~ 62 (390)
+++--+|++++=-++..+.|+.. .+..+ +.+..+ ...+.+++.||+|+|||+.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~p-----e~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSP-----ERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCH-----HHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCH-----HHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 34445678886555666555542 22212 222222 23568999999999999764
No 184
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.17 E-value=1 Score=36.89 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=54.4
Q ss_pred CCCceEEEecchhHHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-C----C--CCCCCCC
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-V----A--SRGLDIP 320 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~----~--~~G~d~~ 320 (390)
.+.+++|.++++..+.++++.+++. +..+..++|+.+.......+. +..+|+|+|+ . + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3457999999999998888877764 777888888877655443332 5678999995 1 1 2356777
Q ss_pred CCCEEEEecC
Q 016375 321 SVDMVINYDI 330 (390)
Q Consensus 321 ~~~~vi~~~~ 330 (390)
+++.+|+.+.
T Consensus 186 ~~~~lViDEa 195 (249)
T 3ber_A 186 ALKYLVMDEA 195 (249)
T ss_dssp TCCEEEECSH
T ss_pred ccCEEEEcCh
Confidence 8888887655
No 185
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.15 E-value=0.29 Score=41.73 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=18.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
+.++++.||+|+|||..+. ++...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4789999999999997653 3443433
No 186
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.98 E-value=0.24 Score=44.13 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=21.6
Q ss_pred chHHHhhHHhHhc--CCCEEEEcCCCCchhHH
Q 016375 32 SKIQAEAIPHALE--GKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 32 ~~~Q~~~~~~i~~--~~~~li~~~tG~GKT~~ 61 (390)
.+.+..++..+.. +..++|.+|||||||..
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 4556666666553 34588999999999965
No 187
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.78 E-value=0.082 Score=47.32 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=30.0
Q ss_pred cccCCcccCCCCHHHHHHHHhc---CCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHh
Q 016375 5 KEVKTFKELGLRDELVEACENV---GWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~ 62 (390)
.+--+|++++=-++..+.|+.. .+..+.-++.-. +...+.+++.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 3444677775444444444431 222222222111 223468999999999999764
No 188
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=91.66 E-value=0.56 Score=36.02 Aligned_cols=121 Identities=12% Similarity=0.106 Sum_probs=72.0
Q ss_pred chHHHhhHHhHhc--CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccCC
Q 016375 32 SKIQAEAIPHALE--GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI 109 (390)
Q Consensus 32 ~~~Q~~~~~~i~~--~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 109 (390)
.+-|.+++..+.. .+-.++.+.-|++|+...+..++....+ .|+.+.+++|+..-.....+....-+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--------~Gr~V~vLAp~~~s~~~l~~~~~l~~--- 104 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--------QGREVQIIAADRRSQMNMKQDERLSG--- 104 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--------TTCCEEEECSTTHHHHHHSCTTTCSS---
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--------cCeEEEEEcCchHHHHHHHhhcCcCc---
Confidence 3568888988864 4568889999999998754444444333 78889999999775544332221111
Q ss_pred CceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEEEEehhhhhcccccHHHHHHHHHhCCCCc
Q 016375 110 SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189 (390)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~ 189 (390)
+++ |... +.. ....+..-+++||||+-.++..+....+...... .-
T Consensus 105 ------------------------~t~--t~~~----ll~-~~~~~tp~s~lIVD~AekLS~kE~~~Lld~A~~~---na 150 (189)
T 2l8b_A 105 ------------------------ELI--TGRR----QLL-EGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARH---NV 150 (189)
T ss_dssp ------------------------CSS--STTT----TTT-TSCCCCCCCEEEEEESSSHHHHHHHHHHHHHHHT---TC
T ss_pred ------------------------cee--ehhh----hhc-CCCCCCCCCEEEEechhhcCHHHHHHHHHHHHhc---CC
Confidence 000 1111 111 1122345569999999987766655444443332 24
Q ss_pred cEEEEeec
Q 016375 190 QTYLFSAT 197 (390)
Q Consensus 190 ~~i~~saT 197 (390)
|+|++--+
T Consensus 151 qvvll~~~ 158 (189)
T 2l8b_A 151 QVLITDSG 158 (189)
T ss_dssp CEEEEESS
T ss_pred EEEEeCCc
Confidence 57777555
No 189
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=91.64 E-value=1.6 Score=40.33 Aligned_cols=123 Identities=12% Similarity=0.052 Sum_probs=81.9
Q ss_pred CCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CC-CC----CCCCCCCCEEE
Q 016375 253 ASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VA-SR----GLDIPSVDMVI 326 (390)
Q Consensus 253 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~-~~----G~d~~~~~~vi 326 (390)
.+.++|.+|....+.+..+.|.+.++.+..+++..+..++......+..|..+++++|+ .+ .. .++..+++.+|
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 46799999999999999999999999999999999998888888889999999999996 22 11 13334566677
Q ss_pred EecCC----CC--cchhhhccccccCCCCcceEEEEeccccHHHHHHHHHHhCCc
Q 016375 327 NYDIP----TN--SKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGML 375 (390)
Q Consensus 327 ~~~~~----~~--~~~~~Q~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 375 (390)
+.+.. |. .......+++..+.-.+..++.+..-........+.+.++..
T Consensus 145 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~ 199 (523)
T 1oyw_A 145 VDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLN 199 (523)
T ss_dssp ESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCC
T ss_pred EeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCC
Confidence 65442 11 112233444433222234455444444445555666666643
No 190
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.61 E-value=0.66 Score=47.35 Aligned_cols=80 Identities=18% Similarity=0.134 Sum_probs=66.3
Q ss_pred hCCCceEEEecchhHHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CCCCCCCCCCCCEE
Q 016375 251 VSASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMV 325 (390)
Q Consensus 251 ~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~~~G~d~~~~~~v 325 (390)
..+.+++|.+++...+.+..+.+.+. +..+..+++..+..++...++.+.+|..+|+|+|. .+...+.+.+++.+
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 35678999999999998888887753 56788899999999999999999999999999996 55556788888888
Q ss_pred EEecC
Q 016375 326 INYDI 330 (390)
Q Consensus 326 i~~~~ 330 (390)
|+...
T Consensus 730 IiDEa 734 (1151)
T 2eyq_A 730 IVDEE 734 (1151)
T ss_dssp EEESG
T ss_pred EEech
Confidence 87654
No 191
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.60 E-value=0.52 Score=37.72 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=55.9
Q ss_pred CCceEEEecchhHHHHHHHHHHhc-----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CC-----CCCCCCCC
Q 016375 253 ASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VA-----SRGLDIPS 321 (390)
Q Consensus 253 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~-----~~G~d~~~ 321 (390)
..+++|.++++..+.+..+.+++. +..+..++|+.+....... +.++..+|+|+|+ .+ ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 357999999999999998888775 6778888888876654433 3446678999996 11 23466778
Q ss_pred CCEEEEecCC
Q 016375 322 VDMVINYDIP 331 (390)
Q Consensus 322 ~~~vi~~~~~ 331 (390)
++.+|+.+..
T Consensus 159 ~~~lViDEah 168 (220)
T 1t6n_A 159 IKHFILDECD 168 (220)
T ss_dssp CCEEEEESHH
T ss_pred CCEEEEcCHH
Confidence 8888876654
No 192
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.56 E-value=0.27 Score=40.64 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=30.2
Q ss_pred CHHHHHHHHhcCCCCCchHHHhhHHhHhcCC-----CEEEEcCCCCchhHHhH
Q 016375 16 RDELVEACENVGWKTPSKIQAEAIPHALEGK-----DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 16 ~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~~-----~~li~~~tG~GKT~~~~ 63 (390)
-+.+.+.|+-.|+. +..+-.. +....+++ .+++.+|+|+|||+.+.
T Consensus 72 ~n~i~~~l~~qg~~-~~~~~~~-l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILELNGYD-PQYAASV-FLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHHTTCC-HHHHHHH-HHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHHcCCC-HHHHHHH-HHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 45778888888873 3322222 33444332 49999999999997654
No 193
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.56 E-value=0.86 Score=37.11 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=53.7
Q ss_pred CCceEEEecchhHHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-----CCC-CCCCCCCC
Q 016375 253 ASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VAS-RGLDIPSV 322 (390)
Q Consensus 253 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-----~~~-~G~d~~~~ 322 (390)
+.+++|.+++++.+.++.+.+++. +..+..++|+.+.......+. ...+|+|+|+ .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCcccc
Confidence 567999999999998887777653 778888888887766554443 2478999996 222 23567788
Q ss_pred CEEEEecC
Q 016375 323 DMVINYDI 330 (390)
Q Consensus 323 ~~vi~~~~ 330 (390)
+.+|+.+.
T Consensus 178 ~~lViDEa 185 (242)
T 3fe2_A 178 TYLVLDEA 185 (242)
T ss_dssp CEEEETTH
T ss_pred cEEEEeCH
Confidence 88887654
No 194
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.44 E-value=0.26 Score=38.94 Aligned_cols=47 Identities=17% Similarity=0.051 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHhcCCCCCchHHHhhHHhHhcC----CCEEEEcCCCCchhHHh
Q 016375 14 GLRDELVEACENVGWKTPSKIQAEAIPHALEG----KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 14 ~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~~~----~~~li~~~tG~GKT~~~ 62 (390)
+--..+.+.|+--|. ++-++ ...+..+.++ ...++.+|+|+|||..+
T Consensus 25 ~~w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 25 GDWRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp CCSHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred CCHHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 334556666664454 34444 3334444433 35999999999999764
No 195
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.38 E-value=0.15 Score=49.75 Aligned_cols=17 Identities=41% Similarity=0.415 Sum_probs=14.6
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999997643
No 196
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.29 E-value=3.2 Score=32.88 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=53.7
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.|+++.-++.+++.+...+ +.+..++|+.....+... ..+..+|+|+|. .+. ..+++.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidi~ 98 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLG----HPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA--RGLDIP 98 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHT----CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT--CSSSCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcC----CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh--cCCCCc
Confidence 45679999999999999999988764 788889998876654433 245788999993 122 346778
Q ss_pred CccEEEE
Q 016375 157 TLKYLVL 163 (390)
Q Consensus 157 ~~~~iIi 163 (390)
+.++||.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 8888874
No 197
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.15 E-value=1.8 Score=36.56 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCCchhHHhH
Q 016375 45 GKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~ 63 (390)
++.+.+.++.|+|||..+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SEEEEEECCTTTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3456778999999997644
No 198
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.14 E-value=0.46 Score=41.23 Aligned_cols=58 Identities=10% Similarity=0.018 Sum_probs=30.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH-HHHHHHHHHHh
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL-AIQISEQFEAL 105 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l-~~q~~~~~~~~ 105 (390)
+.-+++.+++|+|||..++..+...... ......+..++++.....+ ..++.+.+..+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~---~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLP---GAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSC---BTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 3458999999999997654333321110 0000124567787765432 23444444444
No 199
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.85 E-value=0.42 Score=41.85 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
..++++.+|+|+|||..+
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999764
No 200
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=90.66 E-value=0.55 Score=42.72 Aligned_cols=74 Identities=9% Similarity=0.047 Sum_probs=52.0
Q ss_pred HHHHHHHhhCCCceEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCCCCCCCCCCCC
Q 016375 243 YLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 322 (390)
Q Consensus 243 ~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~~~~G~d~~~~ 322 (390)
.+...++. .+.++++.+.+...++.+.+.|.+.++.+....+. ..+..| .+.++...+..|+-+|..
T Consensus 373 ~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~----------~~~~~g--~v~i~~g~L~~GF~~p~~ 439 (483)
T 3hjh_A 373 ALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL----------DEASDR--GRYLMIGAAEHGFVDTVR 439 (483)
T ss_dssp HHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG----------GGCCTT--CEEEEESCCCSCEEETTT
T ss_pred HHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch----------hhcCCC--cEEEEEcccccCcccCCC
Confidence 34444432 35789999999999999999999988875543321 012233 466777789999999988
Q ss_pred CEEEEec
Q 016375 323 DMVINYD 329 (390)
Q Consensus 323 ~~vi~~~ 329 (390)
+.+++.+
T Consensus 440 klaVITE 446 (483)
T 3hjh_A 440 NLALICE 446 (483)
T ss_dssp TEEEEEH
T ss_pred CEEEEEc
Confidence 8877654
No 201
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.58 E-value=0.12 Score=45.96 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=30.7
Q ss_pred cccCCcccCCCCHHHHHHHHh---cCCCCCchHHHhhHHhHhcCCCEEEEcCCCCchhHHh
Q 016375 5 KEVKTFKELGLRDELVEACEN---VGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~---~g~~~~~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~ 62 (390)
.+--+|++++=-++..+.|+. +.+..+.-++.-.+ ...+.+++.+|+|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 345577787533444433433 22333332222221 22467999999999999764
No 202
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=90.46 E-value=2 Score=32.38 Aligned_cols=75 Identities=9% Similarity=0.187 Sum_probs=53.7
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.++++.-+..+++.+...+ +.+..++|+.....+... ......|+|+|. .+. ..+++.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~G~d~~ 97 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDK----FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQ 97 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT--TTCCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcC----CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh--cCCCcc
Confidence 45679999999999999998888754 678889998776554332 245788999993 122 245677
Q ss_pred CccEEEEehh
Q 016375 157 TLKYLVLDEA 166 (390)
Q Consensus 157 ~~~~iIiDE~ 166 (390)
..++||.-+.
T Consensus 98 ~~~~Vi~~~~ 107 (165)
T 1fuk_A 98 QVSLVINYDL 107 (165)
T ss_dssp SCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 7888876443
No 203
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=90.33 E-value=2.8 Score=31.99 Aligned_cols=74 Identities=14% Similarity=0.147 Sum_probs=53.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
...++||.|+++..+..+++.+... +..+..++|+.....+... ..+..+|+|+|.- -...+++.
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-------~~~Gid~~ 101 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-------CARGIDVK 101 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-------CCTTTCCT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-------hhcCCCcc
Confidence 4568999999999999988888765 3778889998776654433 2457899999931 12346777
Q ss_pred CccEEEEeh
Q 016375 157 TLKYLVLDE 165 (390)
Q Consensus 157 ~~~~iIiDE 165 (390)
..++||.-+
T Consensus 102 ~~~~Vi~~d 110 (175)
T 2rb4_A 102 QVTIVVNFD 110 (175)
T ss_dssp TEEEEEESS
T ss_pred cCCEEEEeC
Confidence 888888533
No 204
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.90 E-value=0.43 Score=42.96 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=30.3
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 96 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 96 (390)
..++++.|+||+|||... ..++..+.. .+..++|+=|.-+...
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~--------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLL--------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHH--------TTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHH--------CCCcEEEEeCCCchhH
Confidence 578999999999999863 445555444 4556777777766643
No 205
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=89.89 E-value=1.9 Score=33.62 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=53.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCCC
Q 016375 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGT 157 (390)
Q Consensus 82 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~~ 157 (390)
+.++||.|+++.-+..+++.+...+ +.+..++|+.....+.... .....|+|+|. .+.. .+++.+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~--Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG----VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK--GLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT--TCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc--CCCccc
Confidence 4469999999999999999998764 7788899987765543332 34688999992 2222 457778
Q ss_pred ccEEEEeh
Q 016375 158 LKYLVLDE 165 (390)
Q Consensus 158 ~~~iIiDE 165 (390)
.++||.-+
T Consensus 123 v~~VI~~d 130 (191)
T 2p6n_A 123 IQHVINYD 130 (191)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887633
No 206
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.51 E-value=0.81 Score=39.09 Aligned_cols=54 Identities=9% Similarity=-0.178 Sum_probs=34.2
Q ss_pred HhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
+..|.-++|.|++|+|||..++..+...+. .+..+++++..- -..|+..++...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g~~vl~~slE~-s~~~l~~R~~~~ 118 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSD---------NDDVVNLHSLEM-GKKENIKRLIVT 118 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TTCEEEEEESSS-CHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCCeEEEEECCC-CHHHHHHHHHHH
Confidence 445667999999999999765544433332 235688887653 345555555543
No 207
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.45 E-value=0.32 Score=41.28 Aligned_cols=50 Identities=12% Similarity=0.000 Sum_probs=32.7
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
.+++.+|+|+|||..++..+.+.. +.. .+.+++++....++... .+++++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~-~~g------~g~~vlyId~E~s~~~~---ra~~lG 79 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM-RQY------PDAVCLFYDSEFGITPA---YLRSMG 79 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH-HHC------TTCEEEEEESSCCCCHH---HHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-hcC------CCceEEEEeccchhhHH---HHHHhC
Confidence 588999999999977655444333 210 35678998887666433 355554
No 208
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.26 E-value=0.29 Score=42.54 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=27.5
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELA 95 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 95 (390)
+.-++|.+|+|+|||..++. ++..+.. .+..++++.....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~-la~~~~~--------~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALH-AIAEAQK--------MGGVAAFIDAEHALD 102 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHH-HHHHHHH--------TTCCEEEEESSCCCC
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHHHh--------cCCeEEEEecccccc
Confidence 45689999999999976443 3333332 355678887765543
No 209
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=89.26 E-value=1.7 Score=34.21 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=52.9
Q ss_pred CCCceEEEecchhHHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-----CCC-CCCCCCCCC
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VAS-RGLDIPSVD 323 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-----~~~-~G~d~~~~~ 323 (390)
.+.++++.++++..+.+..+.+.+. +..+..++|+.+.......+. ...+|+|+|+ .+. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3567999999999999999998876 356677777766544433332 2478999995 112 235677788
Q ss_pred EEEEecCC
Q 016375 324 MVINYDIP 331 (390)
Q Consensus 324 ~vi~~~~~ 331 (390)
.+|+.+..
T Consensus 147 ~iViDEah 154 (207)
T 2gxq_A 147 VAVLDEAD 154 (207)
T ss_dssp EEEEESHH
T ss_pred EEEEEChh
Confidence 88876653
No 210
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.15 E-value=0.77 Score=46.58 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=65.1
Q ss_pred CCCceEEEecchhHHHHHHHHHHh---cCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CCCC---CCCCCCCCE
Q 016375 252 SASSTMVFTRTCDATRLLALMLRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASR---GLDIPSVDM 324 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~~~---G~d~~~~~~ 324 (390)
.+.+++|.+|++..+.++.+.+++ .++.+..++|+.+..++...++.+.+|+.+|+|+|+ .+.. -+++.+++.
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 567899999999999999999998 467899999999998888888999999999999996 2211 144567888
Q ss_pred EEEecC
Q 016375 325 VINYDI 330 (390)
Q Consensus 325 vi~~~~ 330 (390)
+|+.+.
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 887665
No 211
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.94 E-value=0.26 Score=40.85 Aligned_cols=20 Identities=25% Similarity=0.219 Sum_probs=16.7
Q ss_pred HhcCCCEEEEcCCCCchhHH
Q 016375 42 ALEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~ 61 (390)
+..+..+++.+|+|+|||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 44567799999999999965
No 212
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=88.89 E-value=6.3 Score=29.92 Aligned_cols=75 Identities=9% Similarity=0.075 Sum_probs=54.2
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.|+++.-+..+++.+...+ +.+..++|+.....+... ......|+|+|.- -...+++.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~----~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-------~~~Gldi~ 98 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQN----FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-------FGRGMDIE 98 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-------CSTTCCGG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcC----CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-------hhcCcchh
Confidence 45579999999999999999988764 678889998776554332 2457899999941 12346677
Q ss_pred CccEEEEehh
Q 016375 157 TLKYLVLDEA 166 (390)
Q Consensus 157 ~~~~iIiDE~ 166 (390)
..++||.-+.
T Consensus 99 ~~~~Vi~~d~ 108 (172)
T 1t5i_A 99 RVNIAFNYDM 108 (172)
T ss_dssp GCSEEEESSC
T ss_pred hCCEEEEECC
Confidence 7888876443
No 213
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.72 E-value=0.55 Score=43.13 Aligned_cols=37 Identities=19% Similarity=-0.027 Sum_probs=24.9
Q ss_pred HHhcCCCCCchHHHhhHHh-HhcCCCEEEEcCCCCchhHH
Q 016375 23 CENVGWKTPSKIQAEAIPH-ALEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 23 l~~~g~~~~~~~Q~~~~~~-i~~~~~~li~~~tG~GKT~~ 61 (390)
|.+.|. +.+.+.+.+.. +..+..+++.||||||||.+
T Consensus 239 l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 239 LIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred HHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 445563 34444444433 45678899999999999965
No 214
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.68 E-value=0.5 Score=39.99 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhHHhH
Q 016375 45 GKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~ 63 (390)
+..+++.+++|+|||.++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4468899999999997654
No 215
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.59 E-value=0.56 Score=42.33 Aligned_cols=51 Identities=22% Similarity=0.061 Sum_probs=32.1
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHH
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 103 (390)
.+.-++|.|++|+|||..++..+...+.. .+.+++++...-. ..|+..++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~--------~g~~vl~~slE~~-~~~l~~R~~ 249 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK--------EGVGVGIYSLEMP-AAQLTLRMM 249 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--------TCCCEEEEESSSC-HHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEECCCC-HHHHHHHHH
Confidence 45679999999999997655444433322 2456888776533 345555543
No 216
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=88.51 E-value=0.3 Score=42.14 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=18.6
Q ss_pred HhHhcCCCEEEEcCCCCchhHHh
Q 016375 40 PHALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 40 ~~i~~~~~~li~~~tG~GKT~~~ 62 (390)
..+..+.++++.||+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34456789999999999999754
No 217
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.39 E-value=0.65 Score=42.06 Aligned_cols=52 Identities=13% Similarity=-0.017 Sum_probs=32.0
Q ss_pred HhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHH
Q 016375 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 102 (390)
+..|.-++|.|++|+|||..++..+...... .+..|+++.....- .++...+
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--------~g~~Vl~~s~E~s~-~~l~~r~ 251 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATK--------TNENVAIFSLEMSA-QQLVMRM 251 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--------SSCCEEEEESSSCH-HHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEECCCCH-HHHHHHH
Confidence 3345679999999999997655444333322 34468888764332 4445444
No 218
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.13 E-value=0.76 Score=38.93 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
..++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999764
No 219
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=87.59 E-value=0.31 Score=44.59 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=20.7
Q ss_pred HhhHHhHhcCCCEEEEcCCCCchhHHh
Q 016375 36 AEAIPHALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 36 ~~~~~~i~~~~~~li~~~tG~GKT~~~ 62 (390)
..+...+..+.++++.||+|+|||..+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 344445556789999999999999753
No 220
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=87.54 E-value=1.3 Score=38.78 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
..++++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999764
No 221
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.47 E-value=0.85 Score=41.07 Aligned_cols=53 Identities=9% Similarity=-0.150 Sum_probs=33.8
Q ss_pred HhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
+..|.-++|.|+||+|||..++-.+...+. .+.++++++..-. ..|+..++..
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~---------~g~~vl~fSlEms-~~ql~~R~~~ 246 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSD---------NDDVVNLHSLEMG-KKENIKRLIV 246 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHH---------TTCEEEEECSSSC-TTHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHH---------cCCEEEEEECCCC-HHHHHHHHHH
Confidence 334567999999999999765544444332 2456888876533 3455555543
No 222
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=87.30 E-value=0.75 Score=37.14 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=52.8
Q ss_pred CCceEEEecchhHHHHHHHHHHhc-----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCC-C-----CCCCCCCC
Q 016375 253 ASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-A-----SRGLDIPS 321 (390)
Q Consensus 253 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~-~-----~~G~d~~~ 321 (390)
+.+++|.+++++.+.+..+.+++. +..+..++|+.+.......+ ...+|+|+|+- + ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 568999999999999999988875 56778888887766544433 35789999961 1 22456667
Q ss_pred CCEEEEecC
Q 016375 322 VDMVINYDI 330 (390)
Q Consensus 322 ~~~vi~~~~ 330 (390)
++.+|+.+.
T Consensus 167 ~~~lViDEa 175 (230)
T 2oxc_A 167 IRLFILDEA 175 (230)
T ss_dssp CCEEEESSH
T ss_pred CCEEEeCCc
Confidence 888887654
No 223
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=87.25 E-value=0.36 Score=38.26 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=17.3
Q ss_pred hHhcCCCEEEEcCCCCchhHHh
Q 016375 41 HALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 41 ~i~~~~~~li~~~tG~GKT~~~ 62 (390)
++..+..+++.||+|+|||..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHH
Confidence 3456678999999999999753
No 224
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.23 E-value=0.58 Score=39.53 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=17.6
Q ss_pred HhcCCCEEEEcCCCCchhHHhH
Q 016375 42 ALEGKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~~ 63 (390)
+..|.-++|.+++|+|||..+.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHH
Confidence 4456789999999999997544
No 225
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.21 E-value=0.92 Score=39.07 Aligned_cols=56 Identities=23% Similarity=0.088 Sum_probs=35.3
Q ss_pred HHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 016375 39 IPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 104 (390)
Q Consensus 39 ~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 104 (390)
+..+..+.-+++.|++|+|||..++-.+...+ . .+..|+|++..-. ..|+..++..
T Consensus 40 ~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a-~--------~g~~Vl~fSlEms-~~ql~~Rlls 95 (338)
T 4a1f_A 40 TSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL-N--------DDRGVAVFSLEMS-AEQLALRALS 95 (338)
T ss_dssp HCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH-H--------TTCEEEEEESSSC-HHHHHHHHHH
T ss_pred hcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-H--------cCCeEEEEeCCCC-HHHHHHHHHH
Confidence 33344566799999999999976554443333 2 4566888876533 4555555533
No 226
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.19 E-value=0.38 Score=40.65 Aligned_cols=17 Identities=24% Similarity=0.001 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
..+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999764
No 227
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.18 E-value=0.77 Score=36.85 Aligned_cols=21 Identities=29% Similarity=0.153 Sum_probs=16.4
Q ss_pred CEEEEcCCCCchhHHhHHHHH
Q 016375 47 DLIGLAQTGSGKTGAFALPIL 67 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~ 67 (390)
++++.+++|+|||..++-.+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 588999999999987554333
No 228
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.93 E-value=0.4 Score=37.77 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
.+..+++.|++|+|||..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4568999999999999764
No 229
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=86.83 E-value=1.5 Score=35.35 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=50.9
Q ss_pred CCCceEEEecchhHHHHHHHHHHhcC----CceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CC----CC--CCCCC
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNLG----QRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VA----SR--GLDIP 320 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~----~~--G~d~~ 320 (390)
.+.+++|.++++..+.+..+.+++.+ ..+..++|+.+.......+ +..+|+|+|+ .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 45679999999999999998888753 5677778776654433332 4678999996 21 12 36667
Q ss_pred CCCEEEEecC
Q 016375 321 SVDMVINYDI 330 (390)
Q Consensus 321 ~~~~vi~~~~ 330 (390)
+++.+|+.+.
T Consensus 171 ~~~~lViDEa 180 (236)
T 2pl3_A 171 DLQMLVLDEA 180 (236)
T ss_dssp TCCEEEETTH
T ss_pred cccEEEEeCh
Confidence 7888887654
No 230
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.81 E-value=0.42 Score=37.66 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=14.5
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.++.+.+.||+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467799999999999965
No 231
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.70 E-value=0.77 Score=39.95 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCchhHH
Q 016375 45 GKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~ 61 (390)
+..+++.+|||||||..
T Consensus 123 ~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 44699999999999965
No 232
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=86.58 E-value=0.19 Score=42.08 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=26.3
Q ss_pred cCCcccCCCCHHHHHHHHhcCCCCCchH-HHhhHHhHh--cCCCEEEEcCCCCchhHHh
Q 016375 7 VKTFKELGLRDELVEACENVGWKTPSKI-QAEAIPHAL--EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~-Q~~~~~~i~--~~~~~li~~~tG~GKT~~~ 62 (390)
--+|++++-.+++.+.|+..-. .|+ ..+++..+. -.+.+++.+|+|+|||..+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 3456777655666665554211 111 112333322 2345999999999999753
No 233
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.48 E-value=0.47 Score=39.35 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
.+.++++.|++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 3568999999999999753
No 234
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.47 E-value=0.52 Score=37.63 Aligned_cols=22 Identities=23% Similarity=-0.017 Sum_probs=17.4
Q ss_pred hcCCCEEEEcCCCCchhHHhHH
Q 016375 43 LEGKDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~~~ 64 (390)
..+.-+++.+++|+|||..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHH
Confidence 3456799999999999976543
No 235
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=86.37 E-value=0.58 Score=47.99 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=24.6
Q ss_pred ceEEEecch-hHHHHHHHHHHhcCCceeeccC
Q 016375 255 STMVFTRTC-DATRLLALMLRNLGQRAIPISG 285 (390)
Q Consensus 255 ~~lvf~~~~-~~~~~l~~~l~~~~~~~~~~~~ 285 (390)
.+.|.+.+. ..+..+.+.|.+.++++....+
T Consensus 344 diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 344 DVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp GEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred heEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 478888887 4788899999999998776554
No 236
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.36 E-value=0.82 Score=40.46 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=27.7
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHH
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 93 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 93 (390)
.+.++++.+++|+|||..... ++..+.. .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~--------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM--------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT--------TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH--------CCCEEEEEeCCcC
Confidence 467899999999999975433 3333322 4556778877654
No 237
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.32 E-value=0.56 Score=40.85 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=27.8
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
.+..+++.+++|+|||..++..+... .. .+..++++.....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~-~~--------~g~~vlyid~E~s~ 103 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA-QR--------EGKTCAFIDAEHAL 103 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-HH--------TTCCEEEEESSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HH--------CCCeEEEEeCCCCc
Confidence 34679999999999997765443333 22 34567888764433
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.30 E-value=0.46 Score=36.71 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.++-+++.+|+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456789999999999965
No 239
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=86.27 E-value=0.4 Score=40.54 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
.+.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 468999999999999764
No 240
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.25 E-value=0.51 Score=41.24 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.3
Q ss_pred HhcCCCEEEEcCCCCchhHH
Q 016375 42 ALEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~ 61 (390)
+..+..+++.+|+|+|||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45688999999999999964
No 241
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.11 E-value=0.42 Score=36.89 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=16.9
Q ss_pred hcCCCEEEEcCCCCchhHHhH
Q 016375 43 LEGKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~~ 63 (390)
..+..+++.|++|+|||..+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 345679999999999997643
No 242
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.96 E-value=0.62 Score=40.00 Aligned_cols=58 Identities=17% Similarity=0.009 Sum_probs=31.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH-HHHHHHHHHHh
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL-AIQISEQFEAL 105 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l-~~q~~~~~~~~ 105 (390)
+.-+++.+++|+|||..++..+........ ....+..++++.-...+ ..++.+.++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~---~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPE---KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGG---GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccc---cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999765443332111100 00114567888765442 34444444444
No 243
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.78 E-value=0.4 Score=37.63 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhHHhH
Q 016375 45 GKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~ 63 (390)
+..++|.+|||+|||..++
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4568999999999996543
No 244
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.75 E-value=1.2 Score=37.20 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=35.2
Q ss_pred HHhHhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcC--CCCCCceEEEEcCCHHHHHHHHHHHHHhc
Q 016375 39 IPHALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQ--RTVPAFFACVLSPTRELAIQISEQFEALG 106 (390)
Q Consensus 39 ~~~i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 106 (390)
+..+..+.-++|.+|+|+|||..+...+. .+..+..-. ....+..++++...... .++...+..++
T Consensus 24 lggl~~G~i~~i~G~~GsGKTtl~~~l~~-~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~~g 91 (279)
T 1nlf_A 24 LPNMVAGTVGALVSPGGAGKSMLALQLAA-QIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHALG 91 (279)
T ss_dssp ETTEETTSEEEEEESTTSSHHHHHHHHHH-HHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHHHH
T ss_pred ECCccCCCEEEEEcCCCCCHHHHHHHHHH-HHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHHHH
Confidence 34566778899999999999976543332 222210000 00013456776654443 44444454443
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=85.71 E-value=0.47 Score=37.43 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=15.9
Q ss_pred hcCCCEEEEcCCCCchhHH
Q 016375 43 LEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~ 61 (390)
..|.-+.+.||+|+|||..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 3566789999999999965
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=85.67 E-value=0.51 Score=37.51 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
.+.-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3566899999999999753
No 247
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=85.67 E-value=2.2 Score=34.21 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=49.5
Q ss_pred CCCceEEEecchhHHHHHHHHHHhc---CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC------CCCCCCCCCCC
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNL---GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD------VASRGLDIPSV 322 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~------~~~~G~d~~~~ 322 (390)
.+.++++.++++..+.++.+.+... +..+..++|+.+.......+ . ...+|+|+|+ .....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4667999999999999999988875 56677777766544433322 2 3478999995 11234667788
Q ss_pred CEEEEecC
Q 016375 323 DMVINYDI 330 (390)
Q Consensus 323 ~~vi~~~~ 330 (390)
+.+|+.+.
T Consensus 169 ~~lViDEa 176 (228)
T 3iuy_A 169 TYLVIDEA 176 (228)
T ss_dssp CEEEECCH
T ss_pred eEEEEECH
Confidence 88887654
No 248
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=85.65 E-value=0.34 Score=37.75 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=15.8
Q ss_pred hcCCCEEEEcCCCCchhHH
Q 016375 43 LEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~ 61 (390)
..+..+++.+|+|+|||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3466789999999999975
No 249
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=85.61 E-value=6.5 Score=31.95 Aligned_cols=75 Identities=8% Similarity=0.162 Sum_probs=51.3
Q ss_pred CCceEEEecchhHHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-C----C-CCCCCCCCC
Q 016375 253 ASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-V----A-SRGLDIPSV 322 (390)
Q Consensus 253 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~----~-~~G~d~~~~ 322 (390)
+.+++|.+++++.+.++.+.+++. +..+..++|+.+.......+ ....+|+|+|+ . + ...+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 468999999999999988887764 45566677776654433222 24678999996 1 1 123567778
Q ss_pred CEEEEecCC
Q 016375 323 DMVINYDIP 331 (390)
Q Consensus 323 ~~vi~~~~~ 331 (390)
+.+|+.+..
T Consensus 176 ~~lViDEah 184 (253)
T 1wrb_A 176 KYIVLDEAD 184 (253)
T ss_dssp CEEEEETHH
T ss_pred CEEEEeCHH
Confidence 888876553
No 250
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=85.57 E-value=4.4 Score=31.67 Aligned_cols=75 Identities=12% Similarity=0.221 Sum_probs=51.9
Q ss_pred CCceEEEecchhHHHHHHHHHHhc-----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-----CCCC-CCCCCC
Q 016375 253 ASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VASR-GLDIPS 321 (390)
Q Consensus 253 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-----~~~~-G~d~~~ 321 (390)
+.++++.++++..+.+..+.+.+. +..+..++|+.+..+.... + .+..+|+|+|+ .+.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999988888764 4567777887765543222 2 35678999996 2222 346667
Q ss_pred CCEEEEecCC
Q 016375 322 VDMVINYDIP 331 (390)
Q Consensus 322 ~~~vi~~~~~ 331 (390)
++.+|+.+..
T Consensus 147 ~~~lViDEah 156 (206)
T 1vec_A 147 VQMIVLDEAD 156 (206)
T ss_dssp CCEEEEETHH
T ss_pred CCEEEEEChH
Confidence 8888876553
No 251
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=85.34 E-value=0.53 Score=36.43 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhHHhH
Q 016375 45 GKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~ 63 (390)
...+++.|++|+|||..+-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4578999999999997643
No 252
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=85.33 E-value=2.8 Score=37.72 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=47.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEE
Q 016375 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (390)
Q Consensus 82 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~i 161 (390)
+.++||+||++.-++..++.++.. ++.+..++|+..............+|+|+|. .+. ..+++. .++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e--~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAE--MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STT--CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhh--eeeccC-ceEE
Confidence 567999999999999999999886 3788888986544444444456789999994 122 245677 7777
Q ss_pred E
Q 016375 162 V 162 (390)
Q Consensus 162 I 162 (390)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 253
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=85.33 E-value=0.38 Score=36.71 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=13.6
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+++.|++|||||..+
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 254
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.29 E-value=0.5 Score=38.93 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
..++++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999754
No 255
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.22 E-value=3 Score=44.05 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=36.5
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhccC
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 108 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 108 (390)
|+.+.+.+|.|+|||..++. ++...++ .+..++++.+--++-..+ +++++-+
T Consensus 1431 g~~iei~g~~~sGkttl~~~-~~a~~~~--------~g~~~~~i~~e~~~~~~~---~~~~Gv~ 1482 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQ-VIAAAQR--------EGKTCAFIDAEHALDPIY---ARKLGVD 1482 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHH-HHHHHHH--------TTCCEEEECTTSCCCHHH---HHHTTCC
T ss_pred CCEEEEEcCCCCCHHHHHHH-HHHHHHh--------cCCeEEEEecCCCCCHHH---HHHcCCC
Confidence 35699999999999987654 4444444 577789999877775554 5566543
No 256
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=85.15 E-value=0.41 Score=36.82 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+++.|++|+|||..+
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346899999999999754
No 257
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=85.15 E-value=5.5 Score=33.61 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=53.7
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.|+++.-++.+++.+... ++.+..++|+.....+.... .+..+|+|+|. .+. ..+++.
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~--~Gidi~ 95 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAA--RGLDIP 95 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTT--CSTTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhh--cCcccc
Confidence 4567999999999988888888664 47888899987765544332 35689999993 122 346778
Q ss_pred CccEEEEehh
Q 016375 157 TLKYLVLDEA 166 (390)
Q Consensus 157 ~~~~iIiDE~ 166 (390)
..++||.=+.
T Consensus 96 ~v~~VI~~d~ 105 (300)
T 3i32_A 96 QVDLVVHYRM 105 (300)
T ss_dssp CCSEEEESSC
T ss_pred ceeEEEEcCC
Confidence 8888885333
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=85.05 E-value=0.53 Score=37.16 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=16.3
Q ss_pred hcCCCEEEEcCCCCchhHHh
Q 016375 43 LEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~ 62 (390)
..+..+.+.||+|||||..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35667899999999999753
No 259
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.01 E-value=0.49 Score=41.41 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
+.+++.||+|+|||..+
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 47999999999999764
No 260
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.69 E-value=0.49 Score=40.15 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
.-++|.||||+|||..+.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 357889999999997643
No 261
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=84.55 E-value=0.71 Score=35.20 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+++.+++|||||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457899999999999753
No 262
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.47 E-value=0.56 Score=40.26 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
..++|.||||+|||..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999997643
No 263
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=84.36 E-value=0.93 Score=41.45 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=17.3
Q ss_pred hcCCCEEEEcCCCCchhHHhH
Q 016375 43 LEGKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~~ 63 (390)
.++.+++|.++||||||.+.-
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHH
Confidence 346799999999999997643
No 264
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=84.31 E-value=1.9 Score=33.34 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=44.4
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.++++.-+..+++.++..+ +.+..++|+.....+... ......|+|+|. .+ . ..+++.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~--~Gldi~ 113 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEG----YACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VA----A--RGLDIS 113 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTT----CCEEEEC--------CHHHHHHHHTSSSEEEEEC-------------CCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcC----CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hh----h--cCCCcc
Confidence 45679999999999999999888753 678888887654433222 234688999993 21 1 235677
Q ss_pred CccEEEEe
Q 016375 157 TLKYLVLD 164 (390)
Q Consensus 157 ~~~~iIiD 164 (390)
..++||.-
T Consensus 114 ~~~~VI~~ 121 (185)
T 2jgn_A 114 NVKHVINF 121 (185)
T ss_dssp SBSEEEES
T ss_pred cCCEEEEe
Confidence 78877753
No 265
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=84.28 E-value=1.5 Score=33.44 Aligned_cols=16 Identities=25% Similarity=0.092 Sum_probs=13.1
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+.+.++.|+|||...
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999653
No 266
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.13 E-value=0.63 Score=42.17 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=15.5
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
+++++.+|+|+|||..+.
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999997643
No 267
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.12 E-value=0.42 Score=39.32 Aligned_cols=55 Identities=18% Similarity=0.088 Sum_probs=30.6
Q ss_pred cccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHh--cCCCEEEEcCCCCchhHHh
Q 016375 5 KEVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~--~~~~~li~~~tG~GKT~~~ 62 (390)
.+..+|+++.-.++....++..-.. . .....+..+. -.+.+++.+|+|+|||..+
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3445677776666665555543110 0 0112333322 1245999999999999653
No 268
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.93 E-value=2 Score=34.71 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=46.2
Q ss_pred CCceEEEecchhHHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-----CCCC-CCCCCCC
Q 016375 253 ASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VASR-GLDIPSV 322 (390)
Q Consensus 253 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-----~~~~-G~d~~~~ 322 (390)
+.+++|.++++..+.++.+.+++. +..+..+.++.+.. ...+.+..+..+|+|+|+ .+.. .+++.++
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 468999999999999999888875 34555556654432 233445557789999994 2222 3566678
Q ss_pred CEEEEecCC
Q 016375 323 DMVINYDIP 331 (390)
Q Consensus 323 ~~vi~~~~~ 331 (390)
+.+|+.+..
T Consensus 175 ~~lViDEah 183 (237)
T 3bor_A 175 KMFVLDEAD 183 (237)
T ss_dssp CEEEEESHH
T ss_pred cEEEECCch
Confidence 888876543
No 269
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.90 E-value=1.1 Score=39.24 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=27.2
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHH
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 94 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 94 (390)
+.-++|.+++|+|||..++..+.. +.. .+..++|+.....+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~-~~~--------~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ-AQK--------AGGTCAFIDAEHAL 114 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH-HHH--------TTCCEEEEESSCCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH-HHH--------CCCeEEEEECCCCh
Confidence 456999999999999765543333 332 34567787765443
No 270
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=83.87 E-value=1.1 Score=35.89 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=47.0
Q ss_pred CCCceEEEecchhHHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-C-----CCCCCCCCC
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-V-----ASRGLDIPS 321 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~-----~~~G~d~~~ 321 (390)
.+.++++.++++..+.+..+.+.+. +..+..++|+.+..+.... +. ..+|+|+|+ . ....+++.+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3568999999999999988888764 5667777777654433222 22 378999996 1 123466677
Q ss_pred CCEEEEecCC
Q 016375 322 VDMVINYDIP 331 (390)
Q Consensus 322 ~~~vi~~~~~ 331 (390)
++.+|+.+..
T Consensus 156 ~~~iViDEah 165 (224)
T 1qde_A 156 IKMFILDEAD 165 (224)
T ss_dssp CCEEEEETHH
T ss_pred CcEEEEcChh
Confidence 8888876553
No 271
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=83.82 E-value=1.7 Score=33.52 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=24.5
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 48 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 48 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
.+|.+++|||||..+...+ . .+.+++++......-.++.+++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la-----~--------~~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI-----G--------DAPQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH-----C--------SCSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH-----h--------cCCCeEEEecCCCCCHHHHHHHHHH
Confidence 5889999999996533211 1 1234778887655545555555544
No 272
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=83.78 E-value=0.62 Score=38.36 Aligned_cols=16 Identities=31% Similarity=0.102 Sum_probs=13.5
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.++|.+|+|||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3689999999999754
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=83.71 E-value=0.36 Score=37.03 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
++.-+.+.+|+|+|||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566889999999999753
No 274
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=83.60 E-value=0.77 Score=36.17 Aligned_cols=16 Identities=31% Similarity=0.214 Sum_probs=13.8
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
-.++.|++|+|||..+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4789999999999864
No 275
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=83.51 E-value=0.58 Score=40.28 Aligned_cols=20 Identities=45% Similarity=0.469 Sum_probs=17.1
Q ss_pred HhcCCCEEEEcCCCCchhHH
Q 016375 42 ALEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~ 61 (390)
+..+..+.+.+|+|+|||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34688999999999999964
No 276
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=83.51 E-value=0.73 Score=35.70 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
++..+++.+++|+|||..+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3457999999999999764
No 277
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=83.50 E-value=0.7 Score=35.85 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+++.+++|+|||..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 278
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=83.47 E-value=0.73 Score=36.97 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=15.9
Q ss_pred hHhcCCCEEEEcCCCCchhHH
Q 016375 41 HALEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 41 ~i~~~~~~li~~~tG~GKT~~ 61 (390)
++..|.-++|.+|.|+|||..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHH
Confidence 455677899999999999964
No 279
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=83.40 E-value=1.8 Score=44.45 Aligned_cols=60 Identities=20% Similarity=0.163 Sum_probs=41.3
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHHHHHHh---cCCCCCCceEEEEcCCHHHHHHHHHHHHHh
Q 016375 46 KDLIGLAQTGSGKTGAFALPILQALLEIAE---NQRTVPAFFACVLSPTRELAIQISEQFEAL 105 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~---~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 105 (390)
...+|.|+.|||||.+...-++..+...+. .........+|+|+=|+.=+.++.+++...
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 456999999999998865555555543110 001123457999999999999988887653
No 280
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=83.37 E-value=0.83 Score=36.60 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=15.9
Q ss_pred HhcCCCEEEEcCCCCchhHH
Q 016375 42 ALEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~ 61 (390)
+..|+-+.|.+|+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34577899999999999964
No 281
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=83.29 E-value=0.81 Score=35.52 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=13.7
Q ss_pred CCEEEEcCCCCchhHH
Q 016375 46 KDLIGLAQTGSGKTGA 61 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~ 61 (390)
+-+.+.+|+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999965
No 282
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=83.26 E-value=0.51 Score=36.56 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+++.|++|||||..+
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446889999999999764
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=83.18 E-value=0.71 Score=35.42 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.5
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999754
No 284
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=83.01 E-value=0.72 Score=35.05 Aligned_cols=16 Identities=13% Similarity=-0.201 Sum_probs=13.6
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+++.|++|+|||..+
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 285
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=82.93 E-value=0.74 Score=39.70 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.++++.+|+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999753
No 286
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.78 E-value=0.4 Score=39.82 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
...+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999764
No 287
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.67 E-value=0.84 Score=38.61 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.0
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
-++|.+|||+|||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47889999999997643
No 288
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=82.60 E-value=0.81 Score=35.95 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.++-+++.+|+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 466799999999999964
No 289
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=82.55 E-value=5.5 Score=34.78 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=55.7
Q ss_pred CCceEEEecchhHHHHHHHHHHhc-----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CC-----CCCCCCCC
Q 016375 253 ASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VA-----SRGLDIPS 321 (390)
Q Consensus 253 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~-----~~G~d~~~ 321 (390)
+.+++|.++++..+.+..+.+.+. +..+..++|+.+....... +.++..+|+|+|+ .+ ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 468999999999999998888775 6778888888876654443 3446678999995 22 23456778
Q ss_pred CCEEEEecC
Q 016375 322 VDMVINYDI 330 (390)
Q Consensus 322 ~~~vi~~~~ 330 (390)
++.+|+.+.
T Consensus 153 ~~~vViDEa 161 (391)
T 1xti_A 153 IKHFILDEC 161 (391)
T ss_dssp CSEEEECSH
T ss_pred cCEEEEeCH
Confidence 888887654
No 290
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=82.50 E-value=0.61 Score=39.00 Aligned_cols=54 Identities=20% Similarity=0.125 Sum_probs=29.0
Q ss_pred ccCCcccCCCCHHHHHHHHhcCCCCCchHHHhhHHhHh--cCCCEEEEcCCCCchhHHh
Q 016375 6 EVKTFKELGLRDELVEACENVGWKTPSKIQAEAIPHAL--EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~Q~~~~~~i~--~~~~~li~~~tG~GKT~~~ 62 (390)
+-.+|+++.-.++..+.++..-.. .. ....+..+. -.+.+++.+|+|+|||..+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 344566666556665555543110 00 012222221 1245999999999999753
No 291
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=82.43 E-value=1.6 Score=33.75 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+++.+++|+|||..+
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 446889999999999764
No 292
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=82.00 E-value=0.84 Score=34.63 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
+++++.+++|||||..+-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999997643
No 293
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=81.92 E-value=0.9 Score=39.61 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
.+.+++.+|+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999764
No 294
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=81.88 E-value=0.92 Score=35.93 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=16.2
Q ss_pred hHhcCCCEEEEcCCCCchhHH
Q 016375 41 HALEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 41 ~i~~~~~~li~~~tG~GKT~~ 61 (390)
.+.+|+-+.+.+|.|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 566788899999999999965
No 295
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.87 E-value=0.9 Score=38.56 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
..++++.+++|+|||..+
T Consensus 25 ~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TSCEEEESCTTSCHHHHH
T ss_pred CCcEEEECCCCchHHHHH
Confidence 468999999999999753
No 296
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=81.85 E-value=0.63 Score=40.83 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.9
Q ss_pred hcCCCEEEEcCCCCchhHH
Q 016375 43 LEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~ 61 (390)
..+..+++.+|||+|||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3456799999999999965
No 297
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=81.50 E-value=0.75 Score=39.05 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
.++++.||+|+|||.++-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999997643
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=81.48 E-value=0.97 Score=35.54 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
.+..+++.+++|+|||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567999999999999753
No 299
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=81.33 E-value=14 Score=34.24 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=56.5
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.|+++.-+..+++.+..... .++.+..++|+.....+.... ....+|+|+|. .+. ..+++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh--cCCCcc
Confidence 566899999999999999999987632 247788899988766544332 35788999994 222 346788
Q ss_pred CccEEEEehh
Q 016375 157 TLKYLVLDEA 166 (390)
Q Consensus 157 ~~~~iIiDE~ 166 (390)
++++||.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 8888885543
No 300
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=81.22 E-value=1.7 Score=36.87 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
.+++.+++|+|||.++.
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 47899999999997644
No 301
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=81.19 E-value=1 Score=35.13 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=16.3
Q ss_pred hcCCCEEEEcCCCCchhHHh
Q 016375 43 LEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~ 62 (390)
..+..+++.|++|||||..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34567999999999999764
No 302
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=81.14 E-value=1.8 Score=43.37 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=42.5
Q ss_pred ccCCcccCC-C-CHHHHHHHHhcCCCCCchHH----HhhHHhHh---cCCCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 6 EVKTFKELG-L-RDELVEACENVGWKTPSKIQ----AEAIPHAL---EGKDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 6 ~~~~~~~~~-~-~~~~~~~l~~~g~~~~~~~Q----~~~~~~i~---~~~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
.+.+|..+| + +++..+..+.....++-||= ..|+..+. +.+.++|.|..|+|||.++-. ++..+.
T Consensus 96 aVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~-im~yLa 169 (1052)
T 4anj_A 96 AVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF-VLRYLT 169 (1052)
T ss_dssp EECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred EECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH-HHHHHH
Confidence 367888886 3 88888877765444444433 34444444 356799999999999987643 444443
No 303
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=81.12 E-value=0.95 Score=41.59 Aligned_cols=53 Identities=11% Similarity=-0.061 Sum_probs=33.2
Q ss_pred HhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHH
Q 016375 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 103 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 103 (390)
+..+.-++|.+++|+|||..++..+.+.+.. .+.++++++-.-. ..|+..++.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~--------~g~~vl~~s~E~s-~~~l~~r~~ 291 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTA--------MGKKVGLAMLEES-VEETAEDLI 291 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTT--------SCCCEEEEESSSC-HHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHh--------cCCcEEEEeccCC-HHHHHHHHH
Confidence 3455679999999999997655444433211 2556888876543 345555543
No 304
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=80.78 E-value=1 Score=35.99 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCCchhHHhH
Q 016375 44 EGKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~ 63 (390)
+.+.+++.+|+||||++.+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34457889999999997643
No 305
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=80.73 E-value=1.2 Score=35.25 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.4
Q ss_pred EEEEcCCCCchhHHhH
Q 016375 48 LIGLAQTGSGKTGAFA 63 (390)
Q Consensus 48 ~li~~~tG~GKT~~~~ 63 (390)
+++.+||||||++.+.
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999997643
No 306
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=80.72 E-value=0.87 Score=34.80 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+++.+++|+|||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 446889999999999754
No 307
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=80.70 E-value=1.7 Score=42.03 Aligned_cols=64 Identities=23% Similarity=0.291 Sum_probs=40.1
Q ss_pred ccCCcccCCC-CHHHHHHHHhcCCCCCch----HHHhhHHhHh---cCCCEEEEcCCCCchhHHhHHHHHHHH
Q 016375 6 EVKTFKELGL-RDELVEACENVGWKTPSK----IQAEAIPHAL---EGKDLIGLAQTGSGKTGAFALPILQAL 70 (390)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~l~~~g~~~~~~----~Q~~~~~~i~---~~~~~li~~~tG~GKT~~~~~~~~~~~ 70 (390)
.+.+|+.+|+ +++..+..+.....++-| .=..|+..+. +.+.++|.|..|+|||.++-. ++..+
T Consensus 124 avNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~-im~yl 195 (783)
T 4db1_A 124 TVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKR-VIQYF 195 (783)
T ss_dssp EECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHH
T ss_pred ecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHH-HHHhh
Confidence 3677888875 677776666543333333 3334444444 346799999999999987543 33333
No 308
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=80.62 E-value=0.95 Score=38.62 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.3
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
.++|.+|||+|||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997643
No 309
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=80.44 E-value=0.92 Score=35.65 Aligned_cols=19 Identities=26% Similarity=0.190 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
.+..+++.|++|||||..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456899999999999764
No 310
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=80.23 E-value=1.6 Score=41.53 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=39.0
Q ss_pred cCCcccCCC-CHHHHHHHHhcCCCCCch----HHHhhHHhHh---cCCCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 7 VKTFKELGL-RDELVEACENVGWKTPSK----IQAEAIPHAL---EGKDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 7 ~~~~~~~~~-~~~~~~~l~~~g~~~~~~----~Q~~~~~~i~---~~~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
+.+|..+|+ +++..+..+.....++-| .=..|+..+. +.+.++|.|..|+|||.++-. ++..+.
T Consensus 48 vNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~-i~~yla 119 (697)
T 1lkx_A 48 TNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKK-IMQFLT 119 (697)
T ss_dssp ECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred EcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHH-HHHHHH
Confidence 567888874 677666655433322333 3334455554 246799999999999987543 444433
No 311
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=80.17 E-value=1.7 Score=42.01 Aligned_cols=64 Identities=14% Similarity=0.299 Sum_probs=40.1
Q ss_pred cCCcccCCC-CHHHHHHHHhcCCCCCch----HHHhhHHhHh---cCCCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 7 VKTFKELGL-RDELVEACENVGWKTPSK----IQAEAIPHAL---EGKDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 7 ~~~~~~~~~-~~~~~~~l~~~g~~~~~~----~Q~~~~~~i~---~~~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
+.+|..+|+ +++.....+.....++-| .=..|+..+. +.+.++|.|..|+|||.++-. ++..+.
T Consensus 110 vNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~-i~~yla 181 (795)
T 1w7j_A 110 INPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKY-AMRYFA 181 (795)
T ss_dssp ECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred ecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHH-HHHHHH
Confidence 678888874 677776665543333333 3334555554 346799999999999987543 444443
No 312
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=79.95 E-value=1.7 Score=40.23 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=19.5
Q ss_pred cCCCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 44 EGKDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
+..+++|.+.||||||.+.-. ++..+.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~t-lI~sLl 239 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNA-MLLSIL 239 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHH-HHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHH-HHHHHH
Confidence 357999999999999976443 333333
No 313
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=79.94 E-value=2.1 Score=36.25 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+.+.+|+|+|||...
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345889999999999763
No 314
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=79.91 E-value=1.8 Score=41.61 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=37.5
Q ss_pred cCCcccCCC-CHHHHHHHHhcCCCCCch----HHHhhHHhHhc---CCCEEEEcCCCCchhHHhHH
Q 016375 7 VKTFKELGL-RDELVEACENVGWKTPSK----IQAEAIPHALE---GKDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 7 ~~~~~~~~~-~~~~~~~l~~~g~~~~~~----~Q~~~~~~i~~---~~~~li~~~tG~GKT~~~~~ 64 (390)
+.+|+.+|+ +++..+..+.....++-| .=..|+..+.. .+.++|.|..|+|||.++-.
T Consensus 126 vNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~ 191 (770)
T 1w9i_A 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKK 191 (770)
T ss_dssp ECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHH
T ss_pred ecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHH
Confidence 677888874 677776665543333333 33345555543 46799999999999987543
No 315
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=79.89 E-value=22 Score=33.85 Aligned_cols=77 Identities=12% Similarity=0.268 Sum_probs=57.2
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.|+++.-++.+.+.+...+ +.+..++++.....+.... .+..+|+|+|. .+ ...+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l--~~GlDip 512 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIG----IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL--REGLDIP 512 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC--STTCCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcC----CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh--hCCcccC
Confidence 45689999999999999999888864 6777888877655443331 24688999984 11 2357788
Q ss_pred CccEEEEehhhh
Q 016375 157 TLKYLVLDEADR 168 (390)
Q Consensus 157 ~~~~iIiDE~H~ 168 (390)
+.++||+-+++.
T Consensus 513 ~v~lVi~~d~d~ 524 (661)
T 2d7d_A 513 EVSLVAILDADK 524 (661)
T ss_dssp TEEEEEETTTTC
T ss_pred CCCEEEEeCccc
Confidence 899999998864
No 316
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=79.89 E-value=2.3 Score=42.48 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=38.9
Q ss_pred ccCCcccCCC-CHHHHHHHHhcCCCCCchHH----HhhHHhHh---cCCCEEEEcCCCCchhHHhHH
Q 016375 6 EVKTFKELGL-RDELVEACENVGWKTPSKIQ----AEAIPHAL---EGKDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~l~~~g~~~~~~~Q----~~~~~~i~---~~~~~li~~~tG~GKT~~~~~ 64 (390)
.+.+|..+|+ +++.....+.....++-||= ..|+..+. +.+.++|.|..|+|||.++-.
T Consensus 125 avNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~ 191 (1010)
T 1g8x_A 125 AVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKK 191 (1010)
T ss_dssp EECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHH
T ss_pred EecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHH
Confidence 3678888874 77777766655444443433 34444444 346799999999999987543
No 317
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.88 E-value=2.2 Score=47.92 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCCCchHHHhhH----HhHhcCCCEEEEcCCCCchhHHhH
Q 016375 17 DELVEACENVGWKTPSKIQAEAI----PHALEGKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 17 ~~~~~~l~~~g~~~~~~~Q~~~~----~~i~~~~~~li~~~tG~GKT~~~~ 63 (390)
+.+.+.++.+|+ .+.+.+..=+ +.+..++.+++.||||+|||.++-
T Consensus 875 ~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 875 KKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 445566677888 5666665333 333446789999999999998743
No 318
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=79.78 E-value=2.6 Score=34.67 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=32.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHHHHhcc
Q 016375 45 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 107 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 107 (390)
+..+++.+++|+|||..++..+.+.+ + .+-+++++.-... ..++.+.++.++-
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~-~--------~Ge~~~~~~~~e~-~~~l~~~~~~~G~ 73 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKL-K--------SDNLVGMFSISYP-LQLIIRILSRFGV 73 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHH-H--------TTCEEEEEECSSC-HHHHHHHHHHTTC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHH-H--------CCCcEEEEEEeCC-HHHHHHHHHHcCC
Confidence 45678888899999854444333333 3 4556777766433 4667777776653
No 319
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=79.74 E-value=2.3 Score=47.09 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCCchHHHh----hHHhHhcCCCEEEEcCCCCchhHHhH
Q 016375 17 DELVEACENVGWKTPSKIQAE----AIPHALEGKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 17 ~~~~~~l~~~g~~~~~~~Q~~----~~~~i~~~~~~li~~~tG~GKT~~~~ 63 (390)
+.+.+.++..|+ .+.+.+.. ..+.+..++.+++.||||+|||.++-
T Consensus 892 ~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 892 QCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 345556667787 46666532 23334457889999999999997643
No 320
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=79.69 E-value=17 Score=33.83 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=57.1
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.|+++.-++.+++.+..... .++.+..++|+.....+.... ....+|+|+|. .+. ..+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~--~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh--cCCCcc
Confidence 466899999999999999999987632 247788899987766543332 35688999994 122 346788
Q ss_pred CccEEEEehhh
Q 016375 157 TLKYLVLDEAD 167 (390)
Q Consensus 157 ~~~~iIiDE~H 167 (390)
++++||.-..-
T Consensus 359 ~v~~VI~~~~p 369 (579)
T 3sqw_A 359 NVHEVLQIGVP 369 (579)
T ss_dssp TCCEEEEESCC
T ss_pred cCCEEEEcCCC
Confidence 88888865543
No 321
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=79.68 E-value=1.5 Score=35.93 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+++.+++|+|||..+
T Consensus 48 g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TCCEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 889999999999999764
No 322
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=79.62 E-value=33 Score=30.48 Aligned_cols=17 Identities=35% Similarity=0.263 Sum_probs=13.8
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
.+.+.++.|+|||.++.
T Consensus 100 vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47778999999997654
No 323
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=79.49 E-value=1.1 Score=34.75 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+++.|++|+|||..+
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999764
No 324
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=79.42 E-value=1.2 Score=34.63 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.4
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+++.+|+|+|||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4688999999999753
No 325
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=79.31 E-value=1.4 Score=34.32 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=16.1
Q ss_pred hcCCCEEEEcCCCCchhHHh
Q 016375 43 LEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~ 62 (390)
..+..+++.|++|||||..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34567899999999999764
No 326
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=79.24 E-value=9.7 Score=25.79 Aligned_cols=112 Identities=14% Similarity=0.214 Sum_probs=65.0
Q ss_pred eEEEecchhHHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhccCCccEEEEeCC--CCCCC-----CCCCCCEEEEe
Q 016375 256 TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV--ASRGL-----DIPSVDMVINY 328 (390)
Q Consensus 256 ~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~~--~~~G~-----d~~~~~~vi~~ 328 (390)
.++|....+-..++...++..|..+..+.++.....|.+.++.|...-.++--.-+. ..+.+ -.|.++.|++.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvviv 84 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIV 84 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 467777778788888888888999888888888888888888887654443221110 00000 13566766655
Q ss_pred cCCC--Ccchhhh-ccccccCCCCcceEEEEeccccHHHHHHHHHHhC
Q 016375 329 DIPT--NSKDYIH-RVGRTARAGRTGVAISLVNQYELEWYLQIEKLIG 373 (390)
Q Consensus 329 ~~~~--~~~~~~Q-~~GR~~R~~~~~~~i~~~~~~~~~~~~~~~~~~~ 373 (390)
...- -..+|+. +.-| ...+++.+++.+.+.-+...+-+.
T Consensus 85 ttddkewikdfieeaker------gvevfvvynnkdddrrkeaqqefr 126 (162)
T 2l82_A 85 TTDDKEWIKDFIEEAKER------GVEVFVVYNNKDDDRRKEAQQEFR 126 (162)
T ss_dssp ECCCHHHHHHHHHHHHHT------TCEEEEEEECSCHHHHHHHHHHHC
T ss_pred ecCcHHHHHHHHHHHHhc------CcEEEEEecCCCchhHHHHHHHhh
Confidence 3310 0112211 1112 235667777766666555554443
No 327
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.23 E-value=1.3 Score=38.13 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=14.3
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
.++|.||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 57899999999997643
No 328
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=79.16 E-value=0.97 Score=35.75 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+++.|++|||||..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 446889999999999764
No 329
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=79.13 E-value=2.3 Score=36.03 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+.+.+|+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 446888999999999753
No 330
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=79.10 E-value=1.2 Score=35.02 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.6
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
..+++.|++|+|||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46999999999999754
No 331
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=79.03 E-value=0.41 Score=49.65 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=25.1
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCc
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 189 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~ 189 (390)
.++.+++|+||+=...+......+.+.+..+.+.+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~ 604 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGR 604 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTS
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 46788999999988888666666666665543433
No 332
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=79.03 E-value=1.4 Score=33.73 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=14.0
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+++.+++|||||..+
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5889999999999764
No 333
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=78.90 E-value=0.61 Score=37.70 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=12.9
Q ss_pred HhcCCCEEEEcCCCCchhHHh
Q 016375 42 ALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~ 62 (390)
+..|.-+.+.||+|+|||...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 445677899999999999653
No 334
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=78.88 E-value=1.2 Score=35.77 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
...+++.|++|||||..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999764
No 335
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=78.87 E-value=21 Score=31.14 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=54.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.|+++.-+..+++.+...+ ..+..++|+.....+... ..+..+|+|+|. .+. ..+++.
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 333 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEG----HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVE 333 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCT
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCC----CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCcc
Confidence 45679999999999999999998764 677888998776654433 245788999994 222 346788
Q ss_pred CccEEEEeh
Q 016375 157 TLKYLVLDE 165 (390)
Q Consensus 157 ~~~~iIiDE 165 (390)
+.++||.-.
T Consensus 334 ~~~~Vi~~~ 342 (412)
T 3fht_A 334 QVSVVINFD 342 (412)
T ss_dssp TEEEEEESS
T ss_pred CCCEEEEEC
Confidence 888888433
No 336
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=78.82 E-value=1 Score=34.95 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
..+++.+++|||||..+
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999764
No 337
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.80 E-value=0.85 Score=39.48 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999754
No 338
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=78.74 E-value=1.2 Score=34.50 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=13.5
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+++.|++|+|||..+
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 339
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=78.71 E-value=2.3 Score=36.37 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
+.+.+.+++|+|||.++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347888999999997644
No 340
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=78.66 E-value=0.85 Score=36.64 Aligned_cols=21 Identities=24% Similarity=0.041 Sum_probs=16.8
Q ss_pred HhcCCCEEEEcCCCCchhHHh
Q 016375 42 ALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~ 62 (390)
+..+.-+.+.+|+|+|||..+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 335667999999999999654
No 341
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=78.63 E-value=1.3 Score=34.17 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=12.9
Q ss_pred CEEEEcCCCCchhHH
Q 016375 47 DLIGLAQTGSGKTGA 61 (390)
Q Consensus 47 ~~li~~~tG~GKT~~ 61 (390)
.+.+.+|+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999965
No 342
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=78.57 E-value=7 Score=35.19 Aligned_cols=69 Identities=12% Similarity=-0.035 Sum_probs=50.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEE
Q 016375 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (390)
Q Consensus 82 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~i 161 (390)
+.++||.+|++.-++.+++.++.. ++.+..++++...........+..+|+|+|. .+.. .+++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~--GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGS--SCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHh--CcCCCC-CEE
Confidence 457999999999999988888765 3778888887765444444456899999994 2232 356666 666
Q ss_pred E
Q 016375 162 V 162 (390)
Q Consensus 162 I 162 (390)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 343
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=78.54 E-value=1.2 Score=37.53 Aligned_cols=17 Identities=35% Similarity=0.319 Sum_probs=14.2
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.-+++.||+|+|||..+
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35899999999999754
No 344
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=78.49 E-value=1.6 Score=33.96 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=13.8
Q ss_pred CCEEEEcCCCCchhHH
Q 016375 46 KDLIGLAQTGSGKTGA 61 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~ 61 (390)
+.++|.||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999964
No 345
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=78.43 E-value=1.6 Score=37.93 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=17.1
Q ss_pred HHhHhcCCC--EEEEcCCCCchhHHh
Q 016375 39 IPHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 39 ~~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
++.+++|-+ ++..+.||||||++.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 344455655 666789999999874
No 346
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=78.35 E-value=1.2 Score=35.09 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
.+..+.+.+++|+|||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567889999999999754
No 347
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=78.35 E-value=1.6 Score=34.74 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.9
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
.+++.|++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36889999999997643
No 348
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=78.29 E-value=6.7 Score=37.37 Aligned_cols=70 Identities=11% Similarity=0.016 Sum_probs=49.7
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccE
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 160 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~ 160 (390)
.+.++||+||++.-++.+++.|+.. ++.+..++|+..............+|+|+|. .+.. .+++. .++
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd-----v~e~--GIDip-v~~ 476 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISEM--GANFG-ASR 476 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG-----GGGT--TCCCC-CSE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc-----hhhc--ceeeC-CcE
Confidence 3567999999999999988888765 4788889996444444444456789999994 2222 35666 666
Q ss_pred EE
Q 016375 161 LV 162 (390)
Q Consensus 161 iI 162 (390)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 349
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=78.10 E-value=1.8 Score=42.13 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=40.2
Q ss_pred ccCCcccCCC-CHHHHHHHHhcCCCCCch----HHHhhHHhHhc---CCCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 6 EVKTFKELGL-RDELVEACENVGWKTPSK----IQAEAIPHALE---GKDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~l~~~g~~~~~~----~Q~~~~~~i~~---~~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
.+.+|+.+|+ +++.....+.....++-| .=..|+..+.. .+.++|.|..|+|||.++-. ++..+.
T Consensus 122 avNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~-i~~yla 194 (837)
T 1kk8_A 122 AVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKK-VIMYLA 194 (837)
T ss_dssp EECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred EeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHH-HHHHHH
Confidence 3678888874 677776665543333333 33344555543 46799999999999987543 333433
No 350
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=78.07 E-value=1.6 Score=34.00 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
|..+.+.+|+|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 356789999999999653
No 351
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=78.03 E-value=1.6 Score=33.59 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
..+++.+++|||||..+
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35889999999999764
No 352
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=77.87 E-value=3.1 Score=40.30 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=37.7
Q ss_pred cCCcccC-CC-CHHHHHHHHhcCCCCCchH----HHhhHHhHh---cCCCEEEEcCCCCchhHHhHH
Q 016375 7 VKTFKEL-GL-RDELVEACENVGWKTPSKI----QAEAIPHAL---EGKDLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 7 ~~~~~~~-~~-~~~~~~~l~~~g~~~~~~~----Q~~~~~~i~---~~~~~li~~~tG~GKT~~~~~ 64 (390)
+.+|..+ ++ +++..+..+.....++-|| =..|+..+. +.+.++|.|..|+|||.++-.
T Consensus 93 VNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~ 159 (784)
T 2v26_A 93 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 159 (784)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH
T ss_pred ecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHH
Confidence 6778888 44 7777776665444333333 334455554 346799999999999987543
No 353
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=77.83 E-value=1.4 Score=35.13 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=13.9
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
.+++.|++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999997643
No 354
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=77.81 E-value=23 Score=30.83 Aligned_cols=73 Identities=11% Similarity=0.173 Sum_probs=53.4
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.|+++.-+..+++.+...+ ..+..++|+.....+... ..+..+|+|+|. .+ ...+++.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~--~~Gidip 325 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLG----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL--TRGIDIQ 325 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS--SSSCCCT
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcC----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc--ccCCCcc
Confidence 45679999999999999999998864 677888888776554332 245788999994 11 2346777
Q ss_pred CccEEEEe
Q 016375 157 TLKYLVLD 164 (390)
Q Consensus 157 ~~~~iIiD 164 (390)
..++||.-
T Consensus 326 ~~~~Vi~~ 333 (400)
T 1s2m_A 326 AVNVVINF 333 (400)
T ss_dssp TEEEEEES
T ss_pred CCCEEEEe
Confidence 88887753
No 355
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=77.73 E-value=0.67 Score=36.68 Aligned_cols=23 Identities=26% Similarity=0.047 Sum_probs=16.9
Q ss_pred HhHhcCCCEEEEcCCCCchhHHh
Q 016375 40 PHALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 40 ~~i~~~~~~li~~~tG~GKT~~~ 62 (390)
+.+..+..+.+.+++|+|||..+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHH
Confidence 33444556889999999999753
No 356
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=77.69 E-value=1.6 Score=34.63 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=20.2
Q ss_pred chHHHhhHHhHhcCCCEEEEcCCCCchhHHh
Q 016375 32 SKIQAEAIPHALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 32 ~~~Q~~~~~~i~~~~~~li~~~tG~GKT~~~ 62 (390)
++.+++.. .+..+..+++.+++|+|||..+
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 34444442 3344567889999999999754
No 357
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.58 E-value=2.2 Score=43.02 Aligned_cols=64 Identities=14% Similarity=0.299 Sum_probs=39.9
Q ss_pred cCCcccCCC-CHHHHHHHHhcCCCCCch----HHHhhHHhHh---cCCCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 7 VKTFKELGL-RDELVEACENVGWKTPSK----IQAEAIPHAL---EGKDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 7 ~~~~~~~~~-~~~~~~~l~~~g~~~~~~----~Q~~~~~~i~---~~~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
+++|..+|+ +++.....+......+-| .=..|+..+. .++.++|.|..|+|||.++-. ++..+.
T Consensus 110 vNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~-i~~yla 181 (1080)
T 2dfs_A 110 INPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKY-AMRYFA 181 (1080)
T ss_dssp ECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred ecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchHHH-HHHHHH
Confidence 678888874 677776665543333333 2334455554 346799999999999987543 344443
No 358
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=77.51 E-value=1.2 Score=35.26 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCCchhHH
Q 016375 45 GKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~ 61 (390)
+..+.|.+|+|+|||+.
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44688999999999965
No 359
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.41 E-value=4.2 Score=35.94 Aligned_cols=19 Identities=16% Similarity=0.081 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhHHhH
Q 016375 45 GKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~ 63 (390)
+.-+.|.+|+|+|||..+.
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 3568999999999997644
No 360
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=77.28 E-value=1.8 Score=36.95 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=16.9
Q ss_pred HhHhcCCC--EEEEcCCCCchhHHh
Q 016375 40 PHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 40 ~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
+.+++|-+ ++..+.||||||++.
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCeEEEEEECCCCCCCceEe
Confidence 34456655 666799999999874
No 361
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=77.26 E-value=1.6 Score=34.96 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
..+++.|++|+|||..+-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 362
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=77.24 E-value=1.4 Score=35.99 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
..+++.|++|||||..+-
T Consensus 30 ~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 363
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=77.13 E-value=1.6 Score=39.17 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 368999999999999764
No 364
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=77.13 E-value=2.6 Score=36.08 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+.-+.+.+|+|+|||.+.
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446889999999999753
No 365
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=77.12 E-value=1.4 Score=37.55 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=16.9
Q ss_pred cCCCEEEEcCCCCchhHHhHHH
Q 016375 44 EGKDLIGLAQTGSGKTGAFALP 65 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~~~~ 65 (390)
.+...++.+|+|+|||..++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlql 143 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHAL 143 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 3456799999999999765543
No 366
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=77.07 E-value=1.6 Score=34.89 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
..+++.|++|||||..+
T Consensus 5 ~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45889999999999764
No 367
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=77.00 E-value=3.6 Score=31.46 Aligned_cols=16 Identities=38% Similarity=0.241 Sum_probs=13.4
Q ss_pred CCEEEEcCCCCchhHH
Q 016375 46 KDLIGLAQTGSGKTGA 61 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~ 61 (390)
.-+++.++.|+|||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 3578999999999964
No 368
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=76.99 E-value=2.7 Score=37.67 Aligned_cols=35 Identities=23% Similarity=0.106 Sum_probs=22.4
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCC-CceEEEEcC
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVP-AFFACVLSP 90 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~-~~~~lil~P 90 (390)
.+++.++.|+|||.++...+ ..+.. . +++++++.-
T Consensus 102 vI~ivG~~GvGKTT~a~~LA-~~l~~--------~~G~kVllvd~ 137 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLG-KFLRE--------KHKKKVLVVSA 137 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHH--------TSCCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHH--------hcCCeEEEEec
Confidence 47778999999998755333 23322 3 566776653
No 369
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=76.88 E-value=2.4 Score=42.42 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=40.5
Q ss_pred ccCCcccCCC-CHHHHHHHHhcCCCCCch----HHHhhHHhHh---cCCCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 6 EVKTFKELGL-RDELVEACENVGWKTPSK----IQAEAIPHAL---EGKDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~l~~~g~~~~~~----~Q~~~~~~i~---~~~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
.+.+|..+|+ +++.....+.....++-| .=..|+..+. +++.++|.|..|+|||.++-. ++..+.
T Consensus 99 avNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~-i~~yla 171 (995)
T 2ycu_A 99 VINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKK-VIQYLA 171 (995)
T ss_dssp EECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHH-HHHHHH
T ss_pred eeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHH-HHHHHH
Confidence 3678888874 777776666543333333 3334455554 246799999999999987543 333433
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=76.83 E-value=1.5 Score=33.97 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=13.8
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+++.+++|||||..+
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 371
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=76.79 E-value=8.3 Score=33.99 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=53.5
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.++++.-++.+++.+...+ +.+..++|+.....+.... ....+|+|+|. .+.. .+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEG----YACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR--GLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT--TSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCC----CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc--CCCcc
Confidence 46679999999999999999988754 7888899988765543332 34688999993 2232 46778
Q ss_pred CccEEEE
Q 016375 157 TLKYLVL 163 (390)
Q Consensus 157 ~~~~iIi 163 (390)
+.++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8888875
No 372
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=76.72 E-value=2.2 Score=40.15 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=18.6
Q ss_pred HhHhcCCCEEEEcCCCCchhHHh
Q 016375 40 PHALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 40 ~~i~~~~~~li~~~tG~GKT~~~ 62 (390)
..+..++.+++.+|+|+|||..+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34456789999999999999753
No 373
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.70 E-value=1.9 Score=39.19 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
..++++.||+|+|||..+
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 457999999999999764
No 374
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=76.63 E-value=1.5 Score=34.29 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=13.4
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+++.|++|+|||..+
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3689999999999754
No 375
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=76.63 E-value=1.4 Score=38.83 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=13.9
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
-++|.||||+|||..+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 47889999999997643
No 376
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=76.47 E-value=2.9 Score=36.31 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.2
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
..+.+.+|+|+|||...
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 45889999999999764
No 377
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=76.34 E-value=1.8 Score=32.83 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=13.9
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+++.+++|||||..+
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5889999999999764
No 378
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=76.32 E-value=7.7 Score=31.83 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=52.3
Q ss_pred CCCceEEEecchhHHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-----CC--CCCCCCC
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VA--SRGLDIP 320 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-----~~--~~G~d~~ 320 (390)
.+.++++.++++..+.+..+.+++. +..+..+.|+.........+ ..+ .+|+|+|+ .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4667999999999999998888874 45566677776655443333 223 78999994 11 2246777
Q ss_pred CCCEEEEecC
Q 016375 321 SVDMVINYDI 330 (390)
Q Consensus 321 ~~~~vi~~~~ 330 (390)
+++.+|+.+.
T Consensus 201 ~l~~lViDEa 210 (262)
T 3ly5_A 201 NLQCLVIDEA 210 (262)
T ss_dssp TCCEEEECSH
T ss_pred cCCEEEEcCh
Confidence 8888887654
No 379
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=76.27 E-value=4.2 Score=36.40 Aligned_cols=55 Identities=7% Similarity=-0.059 Sum_probs=42.2
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCC
Q 016375 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATP 140 (390)
Q Consensus 82 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~ 140 (390)
+.++||+||++.-++.+++.++.. +..+..++|+...........+..+|+|+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 457999999999999999999886 4788889987544333333445789999994
No 380
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=76.22 E-value=1.6 Score=34.23 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
..+++.+++|+|||..+
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999764
No 381
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=76.19 E-value=2.6 Score=37.72 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.0
Q ss_pred CEEEEcCCCCchhHHhHH
Q 016375 47 DLIGLAQTGSGKTGAFAL 64 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~ 64 (390)
.+++.+++|+|||.++..
T Consensus 101 vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CEEEECCSSSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 688999999999976543
No 382
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=75.84 E-value=1.5 Score=37.09 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|+.+.|.+|+|+|||..
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567899999999999964
No 383
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=75.82 E-value=14 Score=32.87 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=52.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCCCcc
Q 016375 84 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLK 159 (390)
Q Consensus 84 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~ 159 (390)
.+||.|+++.-++.+++.+...+ +.+..++|+.....+.... ....+|+|+|. .+. ..+++.+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~~----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~--rGlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEKE----FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VAS--RGLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTT----CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGT--SSCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhCC----CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhh--CCCCcccCC
Confidence 39999999999999999888754 7788899998766544332 45789999994 222 346788888
Q ss_pred EEEE
Q 016375 160 YLVL 163 (390)
Q Consensus 160 ~iIi 163 (390)
+||.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 384
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=75.73 E-value=14 Score=32.15 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=55.9
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.++++.-+..+++.++..+ ..+..++|+.....+... ..+..+|+|+|. .+. ..+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEG----HEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcC----CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCcc
Confidence 45679999999999999999988764 677888998776554333 245788999994 222 346788
Q ss_pred CccEEEEehhh
Q 016375 157 TLKYLVLDEAD 167 (390)
Q Consensus 157 ~~~~iIiDE~H 167 (390)
+.++||.-+..
T Consensus 311 ~~~~Vi~~~~p 321 (395)
T 3pey_A 311 TVSMVVNYDLP 321 (395)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEcCCC
Confidence 89988875544
No 385
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=75.73 E-value=16 Score=32.14 Aligned_cols=73 Identities=8% Similarity=0.195 Sum_probs=53.1
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhc----CCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
...++||.|+++.-++.+++.+...+ +.+..++|+.....+.... .+..+|+|+|. .+. ..+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidi~ 343 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREAN----FTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA--RGLDVP 343 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS--SSCCCT
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCC----CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--CcCCcc
Confidence 34579999999999999998888754 6788889988765543332 34688999994 222 346788
Q ss_pred CccEEEEe
Q 016375 157 TLKYLVLD 164 (390)
Q Consensus 157 ~~~~iIiD 164 (390)
+.++||.-
T Consensus 344 ~v~~Vi~~ 351 (410)
T 2j0s_A 344 QVSLIINY 351 (410)
T ss_dssp TEEEEEES
T ss_pred cCCEEEEE
Confidence 88888853
No 386
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=75.64 E-value=2.1 Score=37.16 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=16.3
Q ss_pred hHhcCCC--EEEEcCCCCchhHHh
Q 016375 41 HALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 41 ~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
.+++|-+ ++..|.||+|||++.
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 3445654 666799999999874
No 387
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=75.59 E-value=1.2 Score=36.24 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|+.+.+.+|.|+|||..
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567899999999999964
No 388
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=75.52 E-value=2.2 Score=36.90 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=16.2
Q ss_pred hHhcCCC--EEEEcCCCCchhHHh
Q 016375 41 HALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 41 ~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
.+++|-+ ++..+.||||||++.
T Consensus 84 ~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 84 AVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceeEEeecCCCCCCCEEe
Confidence 3455654 666789999999874
No 389
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=75.45 E-value=2.2 Score=37.15 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=16.6
Q ss_pred HhHhcCCC--EEEEcCCCCchhHHh
Q 016375 40 PHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 40 ~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
..+++|-+ ++..|.||||||++.
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 33445655 666799999999874
No 390
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=75.45 E-value=1.7 Score=34.16 Aligned_cols=16 Identities=31% Similarity=0.077 Sum_probs=13.3
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+.+.|++|||||..+
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999764
No 391
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=75.43 E-value=1.9 Score=37.09 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=16.4
Q ss_pred HhHhcCCC--EEEEcCCCCchhHHh
Q 016375 40 PHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 40 ~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
..+++|-+ ++..+.||||||++.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 33445654 666789999999873
No 392
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=75.40 E-value=1.6 Score=34.55 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
.+..+++.|++|||||..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3556899999999999764
No 393
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=75.30 E-value=1.7 Score=34.33 Aligned_cols=19 Identities=16% Similarity=0.136 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
++..+++.|++|||||..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456899999999999764
No 394
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=75.23 E-value=1.4 Score=33.11 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=15.6
Q ss_pred hcCCCEEEEcCCCCchhHH
Q 016375 43 LEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~ 61 (390)
..+.-+.+.+|.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4566788999999999964
No 395
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=75.20 E-value=2.3 Score=36.77 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=16.7
Q ss_pred HhHhcCCC--EEEEcCCCCchhHHh
Q 016375 40 PHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 40 ~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
..+++|-+ ++..+.||+|||++.
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 34455654 666799999999874
No 396
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=75.18 E-value=1.6 Score=41.04 Aligned_cols=16 Identities=13% Similarity=0.405 Sum_probs=14.3
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999753
No 397
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=75.17 E-value=2.2 Score=37.20 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=16.6
Q ss_pred HhHhcCCC--EEEEcCCCCchhHHh
Q 016375 40 PHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 40 ~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
..+++|-+ ++..+.||||||++.
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeE
Confidence 33455655 666789999999874
No 398
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=75.17 E-value=1.7 Score=34.46 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.5
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+++.|++|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999764
No 399
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=74.97 E-value=2.3 Score=36.74 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=16.5
Q ss_pred HhHhcCCC--EEEEcCCCCchhHHh
Q 016375 40 PHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 40 ~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
+.+++|-+ ++..+.||||||++.
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 33445655 666789999999874
No 400
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=74.96 E-value=2.1 Score=31.80 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=13.2
Q ss_pred CEEEEcCCCCchhHH
Q 016375 47 DLIGLAQTGSGKTGA 61 (390)
Q Consensus 47 ~~li~~~tG~GKT~~ 61 (390)
-.+|.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 578999999999965
No 401
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=74.89 E-value=7.4 Score=35.11 Aligned_cols=69 Identities=12% Similarity=0.032 Sum_probs=47.5
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHhcCCCCCEEEeCCchhHHHhhcCCCccCCCccEE
Q 016375 82 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 161 (390)
Q Consensus 82 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~~i 161 (390)
+.++||.+|++.-++.+++.++..+ +.+..++++...........+..+|+|+|.- +. ..+++.+ ++|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g----~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~v-----~~--~GiDip~-~~V 257 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAG----KKVIQLNRKSYDTEYPKCKNGDWDFVITTDI-----SE--MGANFGA-SRV 257 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT----CCEEEESTTCCCCCGGGSSSCCCSEEEESSC-----C-----CCCSC-SEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcC----CcEEecCHHHHHHHHhhccCCCceEEEECCh-----HH--hCeecCC-CEE
Confidence 5579999999999999999998863 7788888865443333334457899999941 11 2356666 555
Q ss_pred E
Q 016375 162 V 162 (390)
Q Consensus 162 I 162 (390)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 5
No 402
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=74.89 E-value=2.2 Score=37.01 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=16.2
Q ss_pred hHhcCCC--EEEEcCCCCchhHHh
Q 016375 41 HALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 41 ~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
.+++|-+ ++..+.||||||++.
T Consensus 100 ~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 100 SFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHhCCCceEEEEeCCCCCCceeee
Confidence 3445654 667789999999874
No 403
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=74.87 E-value=2.3 Score=36.41 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=18.5
Q ss_pred hHHhHhcCCC--EEEEcCCCCchhHHh
Q 016375 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 38 ~~~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
++..+++|-+ ++..+.||||||++.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4555666765 666799999999874
No 404
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=74.83 E-value=1.9 Score=34.75 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHhH
Q 016375 46 KDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~~ 63 (390)
..+++.+++|+|||..+-
T Consensus 17 ~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 405
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=74.78 E-value=1.8 Score=33.88 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.7
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+++.|++|||||..+
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999764
No 406
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=74.51 E-value=0.32 Score=50.37 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=26.8
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCCCCccEEEE
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 194 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 194 (390)
+++..++|+||+=...+......+.+.+....+.+.++.+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~I 1272 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVI 1272 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEE
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4567799999987666766666777766666555533433
No 407
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=74.45 E-value=1.4 Score=35.10 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=16.1
Q ss_pred hcCCCEEEEcCCCCchhHH
Q 016375 43 LEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~ 61 (390)
..|+.+.+.+|.|+|||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577899999999999964
No 408
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=74.38 E-value=2 Score=32.43 Aligned_cols=16 Identities=19% Similarity=0.061 Sum_probs=13.5
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+++.+++|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999764
No 409
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=74.37 E-value=2.3 Score=37.53 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=17.2
Q ss_pred HHhHhcCCC--EEEEcCCCCchhHHh
Q 016375 39 IPHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 39 ~~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
+..+++|-+ ++..|.||||||++.
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 344456654 666789999999874
No 410
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=74.36 E-value=1.9 Score=34.56 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=13.1
Q ss_pred EEEEcCCCCchhHHh
Q 016375 48 LIGLAQTGSGKTGAF 62 (390)
Q Consensus 48 ~li~~~tG~GKT~~~ 62 (390)
+++.|++|||||..+
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999764
No 411
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=74.17 E-value=2 Score=33.31 Aligned_cols=15 Identities=33% Similarity=0.226 Sum_probs=13.0
Q ss_pred EEEEcCCCCchhHHh
Q 016375 48 LIGLAQTGSGKTGAF 62 (390)
Q Consensus 48 ~li~~~tG~GKT~~~ 62 (390)
+++.|++|||||..+
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999764
No 412
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=74.14 E-value=2 Score=33.43 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.0
Q ss_pred EEEEcCCCCchhHHh
Q 016375 48 LIGLAQTGSGKTGAF 62 (390)
Q Consensus 48 ~li~~~tG~GKT~~~ 62 (390)
+++.|++|||||..+
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999764
No 413
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=74.13 E-value=2.4 Score=36.74 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=17.7
Q ss_pred hHHhHhcCCC--EEEEcCCCCchhHHh
Q 016375 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 38 ~~~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
+++.+++|-+ ++..+.||+|||++.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3344556665 566789999999874
No 414
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=74.08 E-value=2.4 Score=36.74 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=16.9
Q ss_pred HHhHhcCCC--EEEEcCCCCchhHHh
Q 016375 39 IPHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 39 ~~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
++.+++|-+ ++..+.||+|||++.
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 344455655 566689999999874
No 415
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=73.97 E-value=1.9 Score=35.53 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=14.2
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
..+++.|++|||||..+
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35889999999999764
No 416
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=73.90 E-value=2.5 Score=36.82 Aligned_cols=23 Identities=39% Similarity=0.692 Sum_probs=16.6
Q ss_pred HhHhcCCC--EEEEcCCCCchhHHh
Q 016375 40 PHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 40 ~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
..+++|-+ ++..+.||||||++.
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34455655 666789999999874
No 417
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=73.88 E-value=2.1 Score=34.12 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
..+++.+++|||||..+
T Consensus 6 ~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999764
No 418
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=73.71 E-value=2 Score=34.38 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
..+.+.|++|||||..+
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999764
No 419
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=73.69 E-value=3.5 Score=37.45 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.1
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
..+.+.|++|+|||...
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 35889999999999753
No 420
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=73.66 E-value=8.3 Score=39.04 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=57.8
Q ss_pred CCCceEEEecchhHHHHHHHHHHhc----CC----ceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CCCCCC-CCCC
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNL----GQ----RAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGL-DIPS 321 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~~~G~-d~~~ 321 (390)
.+.+++|.+|++..+.++.+.+++. +. .+..++|+.+...+.+..+.+.+ .+|+|+|+ .+..-+ .+.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 4678999999999999988888754 45 78889999998887777777776 89999996 111111 1557
Q ss_pred CCEEEEecC
Q 016375 322 VDMVINYDI 330 (390)
Q Consensus 322 ~~~vi~~~~ 330 (390)
++.+|+.+.
T Consensus 176 l~~lViDEa 184 (1054)
T 1gku_B 176 FDFIFVDDV 184 (1054)
T ss_dssp CSEEEESCH
T ss_pred CCEEEEeCh
Confidence 788887654
No 421
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=73.56 E-value=1.8 Score=34.21 Aligned_cols=18 Identities=28% Similarity=-0.049 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+.|.||+|||||..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 345789999999999653
No 422
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=73.55 E-value=2 Score=35.01 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
...+++.||+|+|||..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357999999999999653
No 423
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=73.52 E-value=3.6 Score=36.04 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=17.8
Q ss_pred HhcCCCEEEEcCCCCchhHHh
Q 016375 42 ALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~ 62 (390)
+.+|+...|.+|+|+|||...
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHH
Confidence 346899999999999999754
No 424
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=73.52 E-value=1.4 Score=35.80 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=15.9
Q ss_pred hcCCCEEEEcCCCCchhHH
Q 016375 43 LEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~ 61 (390)
..|+.+.+.+|.|+|||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567899999999999964
No 425
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=73.52 E-value=1.6 Score=33.45 Aligned_cols=18 Identities=22% Similarity=0.047 Sum_probs=10.9
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+++.+++|||||..+
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346889999999999764
No 426
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=73.42 E-value=2 Score=33.67 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=13.4
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+.|.|++|||||..+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999753
No 427
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=73.39 E-value=1.9 Score=33.04 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+..+++.+++|+|||..+
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456789999999999753
No 428
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=73.22 E-value=2.3 Score=36.90 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=17.1
Q ss_pred HHhHhcCCC--EEEEcCCCCchhHHh
Q 016375 39 IPHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 39 ~~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
+..+++|-+ ++..+.||||||++.
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 334455654 666789999999874
No 429
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=73.17 E-value=23 Score=31.67 Aligned_cols=75 Identities=13% Similarity=0.229 Sum_probs=55.8
Q ss_pred CCCceEEEecchhHHHHHHHHHHhc-CC---ceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CCC-----CCCCCCC
Q 016375 252 SASSTMVFTRTCDATRLLALMLRNL-GQ---RAIPISGHMSQSKRLGALNKFKAGECNILICTD-VAS-----RGLDIPS 321 (390)
Q Consensus 252 ~~~~~lvf~~~~~~~~~l~~~l~~~-~~---~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~~-----~G~d~~~ 321 (390)
.+.+++|.+|+...+.+..+.+.+. +. .+..++|+....++..... ..+|+|+|. .+. ..+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 6789999999999999999888876 55 7888999988776655443 357899985 221 1355667
Q ss_pred CCEEEEecCC
Q 016375 322 VDMVINYDIP 331 (390)
Q Consensus 322 ~~~vi~~~~~ 331 (390)
++.||+.+..
T Consensus 126 ~~~vIiDEaH 135 (494)
T 1wp9_A 126 VSLIVFDEAH 135 (494)
T ss_dssp CSEEEEETGG
T ss_pred ceEEEEECCc
Confidence 8888876654
No 430
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=73.12 E-value=2.7 Score=36.29 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=17.6
Q ss_pred hHHhHhcCCC--EEEEcCCCCchhHHh
Q 016375 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 38 ~~~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
++..+++|-+ ++..+.||||||++.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 3344456655 666789999999874
No 431
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=72.98 E-value=2.7 Score=43.11 Aligned_cols=65 Identities=15% Similarity=0.289 Sum_probs=41.1
Q ss_pred ccCCcccCCC-CHHHHHHHHhcCCCCCchHH----HhhHHhHhc---CCCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 6 EVKTFKELGL-RDELVEACENVGWKTPSKIQ----AEAIPHALE---GKDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~l~~~g~~~~~~~Q----~~~~~~i~~---~~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
.+.+|..+|+ +++.....+......+-||= ..|+..+.. ++.++|.|..|+|||.++-. ++..+.
T Consensus 122 ~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~k~-~~~yla 194 (1184)
T 1i84_S 122 VINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKK-VIQYLA 194 (1184)
T ss_dssp EECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHHHHH-HHHHHH
T ss_pred eeCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHHHHH-HHHHHH
Confidence 3678888884 77777766654443443433 344445442 46799999999999987543 333433
No 432
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=72.93 E-value=2.3 Score=32.59 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.2
Q ss_pred CEEEEcCCCCchhHH
Q 016375 47 DLIGLAQTGSGKTGA 61 (390)
Q Consensus 47 ~~li~~~tG~GKT~~ 61 (390)
-.+|.+|+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 578999999999965
No 433
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=72.93 E-value=2.9 Score=36.93 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=18.3
Q ss_pred hHHhHhcCCC--EEEEcCCCCchhHHh
Q 016375 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 38 ~~~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
++..+++|-+ ++..|.||||||++.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4455566765 566789999999874
No 434
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=72.87 E-value=2.7 Score=36.38 Aligned_cols=25 Identities=36% Similarity=0.605 Sum_probs=18.1
Q ss_pred hHHhHhcCCC--EEEEcCCCCchhHHh
Q 016375 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 38 ~~~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
++..+++|-+ ++..+.||||||++.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 4455556665 566789999999874
No 435
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=72.66 E-value=7.3 Score=35.57 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=22.6
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcC
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 90 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 90 (390)
.+++.+++|+|||.++.. +...+.+ .+.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~k-LA~~l~~--------~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSK-LAYYYQR--------KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHH-HHHHHHH--------TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHh--------CCCeEEEEec
Confidence 478889999999976543 3333332 3555666665
No 436
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=72.65 E-value=2.5 Score=36.93 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=16.2
Q ss_pred hHhcCCC--EEEEcCCCCchhHHh
Q 016375 41 HALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 41 ~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
.+++|-+ ++..+.||+|||++.
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCceEEEEeecCCCCCcceec
Confidence 3445654 666789999999874
No 437
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=72.54 E-value=1.5 Score=35.32 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|..+.+.+|.|+|||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999964
No 438
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=72.48 E-value=2.3 Score=37.26 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=21.2
Q ss_pred chHHHhhHHh--------HhcCCC--EEEEcCCCCchhHHh
Q 016375 32 SKIQAEAIPH--------ALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 32 ~~~Q~~~~~~--------i~~~~~--~li~~~tG~GKT~~~ 62 (390)
..-|.+.+.. +++|-+ ++..+.||||||++.
T Consensus 76 ~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 76 RSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 4456666653 345554 666799999999874
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=72.34 E-value=2 Score=32.76 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhH
Q 016375 45 GKDLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~~ 63 (390)
+..+++.++.|+|||..++
T Consensus 16 G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TEEEEEEESSSSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 5679999999999997654
No 440
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=72.28 E-value=2.9 Score=38.57 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=20.9
Q ss_pred HhcCCCEEEEcCCCCchhHHhHHHHHHHHH
Q 016375 42 ALEGKDLIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
+..|..+++.+|+|+|||......++.-+.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345678999999999999765443334443
No 441
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=72.25 E-value=3.1 Score=32.78 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=13.6
Q ss_pred CCEEEEcCCCCchhHH
Q 016375 46 KDLIGLAQTGSGKTGA 61 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~ 61 (390)
.-.+|.+|+|+|||..
T Consensus 24 ~~~~I~G~NgsGKSti 39 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEEcCCCCCHHHH
Confidence 3578999999999965
No 442
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=72.16 E-value=2.6 Score=36.92 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=17.2
Q ss_pred HHhHhcCCC--EEEEcCCCCchhHHh
Q 016375 39 IPHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 39 ~~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
+..+++|-+ ++..+.||||||++.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 344456654 666789999999874
No 443
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=72.15 E-value=4.5 Score=34.10 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=13.8
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
.+.+.+++|+|||.++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46778999999997654
No 444
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=72.07 E-value=1.5 Score=36.54 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
+|.-+.|.+|.|+|||+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467799999999999964
No 445
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=71.75 E-value=26 Score=29.94 Aligned_cols=74 Identities=16% Similarity=0.336 Sum_probs=53.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.|+++.-+..+++.++..+ ..+..++|+.....+... ..+..+|+|+|. .+.. .+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~------Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIG----FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VMSR------GIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTT----CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-THHH------HCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcC----CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhhc------CCCcc
Confidence 45679999999999999999988764 678888988776554332 245788999993 2211 35667
Q ss_pred CccEEEEeh
Q 016375 157 TLKYLVLDE 165 (390)
Q Consensus 157 ~~~~iIiDE 165 (390)
+.++||.-.
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 788887543
No 446
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=71.59 E-value=4.4 Score=32.20 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=15.7
Q ss_pred hcCCCEEEEcCCCCchhHHh
Q 016375 43 LEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~ 62 (390)
+.+.-+++.++.|+|||..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH
Confidence 34566889999999999764
No 447
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=71.50 E-value=1.6 Score=35.19 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
+|+.+.+.+|.|+|||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567899999999999964
No 448
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=71.40 E-value=1.6 Score=35.65 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|+.+.+.+|.|+|||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567899999999999964
No 449
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=71.02 E-value=3.1 Score=36.81 Aligned_cols=25 Identities=44% Similarity=0.634 Sum_probs=18.5
Q ss_pred hHHhHhcCCC--EEEEcCCCCchhHHh
Q 016375 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 38 ~~~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
++..+++|-+ ++..|.||||||++.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4555666765 566789999999874
No 450
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=70.92 E-value=3.3 Score=35.30 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=12.9
Q ss_pred CEEEEcCCCCchhHH
Q 016375 47 DLIGLAQTGSGKTGA 61 (390)
Q Consensus 47 ~~li~~~tG~GKT~~ 61 (390)
-++|.++.|+|||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 478999999999964
No 451
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=70.87 E-value=3.1 Score=36.33 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.6
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
-++|.+|+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999653
No 452
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=70.85 E-value=1.8 Score=35.55 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
..+++.|++|||||..+
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35899999999999754
No 453
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=70.77 E-value=1.8 Score=35.79 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|+.+.+.+|.|+|||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567899999999999964
No 454
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=70.75 E-value=2.7 Score=36.61 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=18.1
Q ss_pred hHHhHhcCCC--EEEEcCCCCchhHHh
Q 016375 38 AIPHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 38 ~~~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
++..+++|-+ ++..|.||||||++.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4455566665 566789999999874
No 455
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=70.68 E-value=1.7 Score=35.98 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|..+.+.+|.|+|||..
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467789999999999964
No 456
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=70.67 E-value=1.7 Score=35.75 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|..+.+.+|.|+|||..
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999964
No 457
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=70.58 E-value=3.2 Score=37.14 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred hHHHhhHHh--------HhcCCC--EEEEcCCCCchhHHh
Q 016375 33 KIQAEAIPH--------ALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 33 ~~Q~~~~~~--------i~~~~~--~li~~~tG~GKT~~~ 62 (390)
.-|.+.+.. +++|-+ ++..|.||+|||++.
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 346655544 445654 666789999999874
No 458
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=70.57 E-value=1.8 Score=35.28 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|..+.+.+|.|+|||..
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999964
No 459
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=70.16 E-value=1.8 Score=35.73 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|.-+.+.+|.|+|||+.
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999964
No 460
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=70.02 E-value=6.4 Score=30.73 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=15.5
Q ss_pred EEEEcCCCCchhHHhHHHHHHHHH
Q 016375 48 LIGLAQTGSGKTGAFALPILQALL 71 (390)
Q Consensus 48 ~li~~~tG~GKT~~~~~~~~~~~~ 71 (390)
+++.|.-|||||+.+- .+.+.+.
T Consensus 3 I~~EG~DGsGKsTq~~-~L~~~L~ 25 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQ-LLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHH-HHHHHHH
T ss_pred EEEECCCCCCHHHHHH-HHHHHHH
Confidence 4678999999997643 2344443
No 461
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=69.88 E-value=4.3 Score=34.90 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=23.9
Q ss_pred ccEEEEehhhhhcc---cccHHHHHHHHHhCCCCccEEEEeecC
Q 016375 158 LKYLVLDEADRLLN---DDFEKSLDEILNVIPRMRQTYLFSATM 198 (390)
Q Consensus 158 ~~~iIiDE~H~~~~---~~~~~~~~~~~~~~~~~~~~i~~saT~ 198 (390)
.-+|||||+|++.. ..+...+..+....++ . .+++++..
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~i~~g~~ 179 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKR-I-KFIMSGSE 179 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTT-E-EEEEEESS
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCC-e-EEEEEcCc
Confidence 55899999998753 3555666666655432 2 34455543
No 462
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=69.83 E-value=2.4 Score=35.10 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|..+.+.+|.|+|||..
T Consensus 45 ~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467799999999999964
No 463
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=69.81 E-value=1.9 Score=35.50 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|..+.+.+|.|+|||..
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467789999999999964
No 464
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=69.79 E-value=1.9 Score=35.37 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.9
Q ss_pred hcCCCEEEEcCCCCchhHH
Q 016375 43 LEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~ 61 (390)
..|..+.+.+|.|+|||..
T Consensus 24 ~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3567789999999999964
No 465
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=69.69 E-value=2.4 Score=34.67 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.0
Q ss_pred hcCCCEEEEcCCCCchhHH
Q 016375 43 LEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~ 61 (390)
..|..+.+.+|.|+|||..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567889999999999964
No 466
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=69.63 E-value=2.6 Score=36.89 Aligned_cols=19 Identities=21% Similarity=0.081 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
.++.+++.||+|+|||..+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999653
No 467
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=69.56 E-value=9.8 Score=35.06 Aligned_cols=75 Identities=12% Similarity=0.172 Sum_probs=49.9
Q ss_pred CCceEEEecchhHHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-----CCCCC-C-CCCC
Q 016375 253 ASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VASRG-L-DIPS 321 (390)
Q Consensus 253 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-----~~~~G-~-d~~~ 321 (390)
+.+++|.+|+...+.+..+.+.+. +..+..++|+.+...+...+. ...+|+|+|+ .+..+ + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999988888877765 888999999876554332221 2367999996 22222 3 5667
Q ss_pred CCEEEEecCC
Q 016375 322 VDMVINYDIP 331 (390)
Q Consensus 322 ~~~vi~~~~~ 331 (390)
++.+|+.+..
T Consensus 131 ~~~vViDEah 140 (556)
T 4a2p_A 131 FTLMIFDECH 140 (556)
T ss_dssp CSEEEEETGG
T ss_pred CCEEEEECCc
Confidence 8888876653
No 468
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=69.51 E-value=2.8 Score=32.70 Aligned_cols=16 Identities=25% Similarity=0.129 Sum_probs=13.7
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+.|.+++|||||..+
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 469
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=69.49 E-value=2.5 Score=38.60 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.6
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
+.+++.+|+|+|||..+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999754
No 470
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=69.42 E-value=3 Score=34.16 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
.+..+.|.+|+|||||..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567899999999999753
No 471
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=69.28 E-value=4 Score=37.63 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=29.5
Q ss_pred HhcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHHHHHHHHHHH
Q 016375 42 ALEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 102 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 102 (390)
+..|..++|.+++|+|||..... ++..... .+.+++++++.... .++...+
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~-l~g~~~~--------~G~~vi~~~~ee~~-~~l~~~~ 328 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSR-FVENACA--------NKERAILFAYEESR-AQLLRNA 328 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHH-HHHHHHT--------TTCCEEEEESSSCH-HHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH-HHHHHHh--------CCCCEEEEEEeCCH-HHHHHHH
Confidence 34567799999999999975432 2222211 23456777665432 3444444
No 472
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=69.19 E-value=2 Score=35.54 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
+|..+.+.+|.|+|||..
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 467789999999999964
No 473
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=69.13 E-value=1.6 Score=35.54 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|+.+.+.+|.|+|||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466789999999999964
No 474
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=69.11 E-value=4.2 Score=34.30 Aligned_cols=71 Identities=7% Similarity=0.044 Sum_probs=47.7
Q ss_pred CCceEEEecchhHHHHHHHHHHhc-----CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-CC-----C-CCCCCC
Q 016375 253 ASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VA-----S-RGLDIP 320 (390)
Q Consensus 253 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-~~-----~-~G~d~~ 320 (390)
...++|.+++++.+.++.+.+... +..+....++...... .....+|+|+|+ .+ . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 346999999999999998888764 3445555555432211 135578999996 11 2 346777
Q ss_pred CCCEEEEecC
Q 016375 321 SVDMVINYDI 330 (390)
Q Consensus 321 ~~~~vi~~~~ 330 (390)
+++.+|+...
T Consensus 235 ~l~~lVlDEa 244 (300)
T 3fmo_B 235 KIKVFVLDEA 244 (300)
T ss_dssp GCSEEEETTH
T ss_pred hceEEEEeCH
Confidence 8888887654
No 475
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=68.94 E-value=2 Score=35.56 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|..+.+.+|.|+|||..
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567789999999999964
No 476
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=68.86 E-value=2.1 Score=47.44 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=17.1
Q ss_pred hcCCCEEEEcCCCCchhHHh
Q 016375 43 LEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~ 62 (390)
..++++++.||||+|||..+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 35789999999999999764
No 477
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=68.62 E-value=3.7 Score=35.83 Aligned_cols=23 Identities=43% Similarity=0.589 Sum_probs=16.5
Q ss_pred HhHhcCCC--EEEEcCCCCchhHHh
Q 016375 40 PHALEGKD--LIGLAQTGSGKTGAF 62 (390)
Q Consensus 40 ~~i~~~~~--~li~~~tG~GKT~~~ 62 (390)
..+++|-+ ++..+.||+|||++.
T Consensus 109 ~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 109 QSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHhcCCCceEEEEeCCCCCCCceEe
Confidence 33445654 666789999999874
No 478
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=68.55 E-value=2 Score=35.28 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|..+.+.+|.|+|||..
T Consensus 30 ~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp TTCEEEEECCSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999964
No 479
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=68.54 E-value=3.2 Score=32.35 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=13.7
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
.+.+.|++|||||..+-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37788999999997643
No 480
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=68.46 E-value=2 Score=35.83 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
+|..+.+.+|.|+|||..
T Consensus 46 ~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467789999999999964
No 481
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=68.31 E-value=2.1 Score=35.55 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=22.5
Q ss_pred CCCccEEEEehhhhhcccccHHHHHHHHHhCC
Q 016375 155 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 186 (390)
Q Consensus 155 ~~~~~~iIiDE~H~~~~~~~~~~~~~~~~~~~ 186 (390)
+.+.+++++||.=...+......+..++..+.
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 34567888888887777666666777666664
No 482
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=68.15 E-value=4.6 Score=42.68 Aligned_cols=42 Identities=17% Similarity=0.024 Sum_probs=29.1
Q ss_pred hcCCCEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCCHH
Q 016375 43 LEGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 93 (390)
Q Consensus 43 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 93 (390)
..+..+++.+++|+|||..++..+...+. .+..++|+.-...
T Consensus 32 ~~G~i~lI~G~pGsGKT~LAlqla~~~~~---------~G~~vlYI~te~~ 73 (1706)
T 3cmw_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHA 73 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHH---------TTCCEEEECTTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh---------CCCceEEEEecCc
Confidence 34678999999999999876554444432 3456777776543
No 483
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=67.87 E-value=1.9 Score=32.88 Aligned_cols=16 Identities=31% Similarity=0.231 Sum_probs=13.1
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+.|.+++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999653
No 484
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=67.71 E-value=1.4 Score=43.12 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
.+.++++.+|+|+|||..+
T Consensus 510 ~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHH
T ss_pred CCceeEEECCCCCCHHHHH
Confidence 3567999999999999754
No 485
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=67.46 E-value=86 Score=29.75 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=56.7
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHhccCCCceEEEEecCCchHHHHHh----cCCCCCEEEeCCchhHHHhhcCCCccCC
Q 016375 81 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLG 156 (390)
Q Consensus 81 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~~~l~~~~~~~~~~~~~ 156 (390)
.+.++||.|+++.-++.+.+.+...+ +.+..++++.....+... ..+..+|+|+|.- + ...+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-----l--~~GlDip 506 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHG----IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----L--REGLDIP 506 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----C--CTTCCCT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcC----CCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-----h--hcCccCC
Confidence 45689999999999999999888864 677778887765544333 2356899999831 1 2357788
Q ss_pred CccEEEEehhhh
Q 016375 157 TLKYLVLDEADR 168 (390)
Q Consensus 157 ~~~~iIiDE~H~ 168 (390)
+.++||+=+++.
T Consensus 507 ~v~lVI~~d~d~ 518 (664)
T 1c4o_A 507 EVSLVAILDADK 518 (664)
T ss_dssp TEEEEEETTTTS
T ss_pred CCCEEEEeCCcc
Confidence 899999888763
No 486
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=67.45 E-value=3.3 Score=32.44 Aligned_cols=17 Identities=29% Similarity=-0.089 Sum_probs=14.0
Q ss_pred CCEEEEcCCCCchhHHh
Q 016375 46 KDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~~ 62 (390)
.-+.+.++.|+|||..+
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34888999999999753
No 487
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=67.44 E-value=5.8 Score=34.37 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.2
Q ss_pred CEEEEcCCCCchhHHhH
Q 016375 47 DLIGLAQTGSGKTGAFA 63 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~ 63 (390)
.+.+.+++|+|||..+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997643
No 488
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=67.25 E-value=2.9 Score=40.59 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
..++++.||+|+|||..+
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999764
No 489
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=66.91 E-value=5.4 Score=34.15 Aligned_cols=30 Identities=10% Similarity=0.004 Sum_probs=20.1
Q ss_pred chHHHhhHHh-HhcCCCEEEEcCCCCchhHH
Q 016375 32 SKIQAEAIPH-ALEGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 32 ~~~Q~~~~~~-i~~~~~~li~~~tG~GKT~~ 61 (390)
|+.+.+.+.. +..++.++|.|+.|+|||..
T Consensus 17 R~~el~~L~~~l~~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 17 REEESRKLEESLENYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECCTTSSHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEECCCcCCHHHH
Confidence 3334333433 33357899999999999965
No 490
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=66.89 E-value=1.9 Score=36.51 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchhHH
Q 016375 44 EGKDLIGLAQTGSGKTGA 61 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~ 61 (390)
.|..+.|.+|+|+|||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 467799999999999964
No 491
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=66.82 E-value=6.9 Score=33.38 Aligned_cols=36 Identities=22% Similarity=0.055 Sum_probs=23.6
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHHHHHHhcCCCCCCceEEEEcCC
Q 016375 47 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT 91 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~ 91 (390)
-+++.+..|.|||.++...+.... + .++++|++-..
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA-~--------~G~rVLlvD~D 51 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMA-R--------SGKKTLVISTD 51 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH-H--------TTCCEEEEECC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHH-H--------CCCcEEEEeCC
Confidence 467778999999987654443332 2 46667776643
No 492
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=66.69 E-value=6.3 Score=34.58 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.8
Q ss_pred HhcCCCEEEEcCCCCchhHHh
Q 016375 42 ALEGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 42 i~~~~~~li~~~tG~GKT~~~ 62 (390)
+-+|+..+|.++.|+|||...
T Consensus 172 igrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 172 IGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp CBTTCEEEEEECTTCCHHHHH
T ss_pred ccCCceEEEecCCCCChhHHH
Confidence 346899999999999999754
No 493
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=66.68 E-value=8.7 Score=30.45 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCCchhHHh
Q 016375 44 EGKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 44 ~~~~~li~~~tG~GKT~~~ 62 (390)
+|.-+++.++.|+|||..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~ 20 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTAR 20 (213)
T ss_dssp CCCEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556889999999999764
No 494
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=66.66 E-value=3.5 Score=32.69 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=13.7
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+.|.+++|||||..+
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999754
No 495
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=66.52 E-value=4.2 Score=35.57 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.8
Q ss_pred CCEEEEcCCCCchhHH
Q 016375 46 KDLIGLAQTGSGKTGA 61 (390)
Q Consensus 46 ~~~li~~~tG~GKT~~ 61 (390)
.-.+|.|+||+|||..
T Consensus 26 gl~vi~G~NGaGKT~i 41 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3588999999999975
No 496
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=66.31 E-value=6.8 Score=38.65 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
..++++.||+|+|||..+
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 357999999999999754
No 497
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=66.24 E-value=4.6 Score=32.00 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=48.4
Q ss_pred CCceEEEecchhHHHHHHHHHHhc--------CCceeeccCCCCHHHHHHHHHHhccCCccEEEEeC-----CCCC-CCC
Q 016375 253 ASSTMVFTRTCDATRLLALMLRNL--------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VASR-GLD 318 (390)
Q Consensus 253 ~~~~lvf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ilv~t~-----~~~~-G~d 318 (390)
+.+++|.++++..+.+..+.+++. +..+..+.|+.+.... .+.+ .+..+|+|+|+ .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 467999999999998888877664 4566667776543321 1111 24678999995 2222 355
Q ss_pred CCCCCEEEEecC
Q 016375 319 IPSVDMVINYDI 330 (390)
Q Consensus 319 ~~~~~~vi~~~~ 330 (390)
+.+++.+|+.+.
T Consensus 148 ~~~~~~lViDEa 159 (219)
T 1q0u_A 148 VHTAHILVVDEA 159 (219)
T ss_dssp GGGCCEEEECSH
T ss_pred cCcceEEEEcCc
Confidence 667788876654
No 498
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=66.00 E-value=3 Score=33.91 Aligned_cols=18 Identities=22% Similarity=-0.031 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q 016375 45 GKDLIGLAQTGSGKTGAF 62 (390)
Q Consensus 45 ~~~~li~~~tG~GKT~~~ 62 (390)
+.-+.|.||.|||||+.+
T Consensus 25 g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp SEEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 445789999999999754
No 499
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=65.90 E-value=3.5 Score=34.66 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.6
Q ss_pred CEEEEcCCCCchhHHh
Q 016375 47 DLIGLAQTGSGKTGAF 62 (390)
Q Consensus 47 ~~li~~~tG~GKT~~~ 62 (390)
.+++.+++|||||..+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 500
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=65.70 E-value=1.9 Score=34.02 Aligned_cols=15 Identities=20% Similarity=0.198 Sum_probs=12.8
Q ss_pred EEEEcCCCCchhHHh
Q 016375 48 LIGLAQTGSGKTGAF 62 (390)
Q Consensus 48 ~li~~~tG~GKT~~~ 62 (390)
+++.|++|||||..+
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999653
Done!