BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016376
         (390 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
           Dehydrogenase (E1)
 pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
           Dehydrogenase (E1)
 pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
           Dehydrogenase (E1)
 pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
           Dehydrogenase (E1)
          Length = 410

 Score = 31.2 bits (69), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 332 FPLPEEQKIELEHGIQELTLVCEVLKNELDPLE-RQL 367
           FP   +Q I +   +  + ++C++L NE DPL+ RQL
Sbjct: 130 FPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQL 166


>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
           Dehydrogenase (Branched-Chain Alpha-Keto Acid
           Dehydrogenase, E1b)
          Length = 407

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 332 FPLPEEQKIELEHGIQELTLVCEVLKNELDPLE-RQL 367
           FP   +Q I     +  +  +C++L NE DPL+ RQL
Sbjct: 129 FPTYRQQSILXARDVSLVEXICQLLSNERDPLKGRQL 165


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,687,057
Number of Sequences: 62578
Number of extensions: 387335
Number of successful extensions: 844
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 835
Number of HSP's gapped (non-prelim): 10
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)