BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016376
(390 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q337C0|U496D_ORYSJ UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300
PE=2 SV=1
Length = 456
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 212 SRSWSAAKQLQSIANSLAPPRGNDIAATNGLVVSVFAMSSVLLFVLWTLVAAIPCQDRGL 271
+R S + LQ +A +L+ + + A L+ +++ + SV +FV VA + + L
Sbjct: 166 ARLVSCSATLQELAGNLSLMKVKNSAKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPL 225
Query: 272 NVHFSIPRQFSWGVPLLSLHERITEESKKRERRNSNGLLYEIYLIDKCARQLTDLLDVAQ 331
V +P +F W LH ++EE ++ S + E+ ++ CAR+L L +Q
Sbjct: 226 -VELHVPEKFGWSQAFNDLHTAVSEELTRQLSGGSVAAVKELEEVEACARRLHVLASTSQ 284
Query: 332 FPLPEEQKIELEHGI 346
EE+ L + +
Sbjct: 285 L---EEEAANLANAV 296
>sp|A2Z9A6|U496D_ORYSI UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3
SV=2
Length = 456
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 119/308 (38%), Gaps = 52/308 (16%)
Query: 44 LESFHRQIADHFNALSAVADDELLSIAWIQKLLYAFVCCQEEFRAI--LLKDKALVLKPP 101
L S+ +A L A ++L+++W++ A C E I L+ D L +
Sbjct: 36 LASYEDALALSLRKLKPEAASDVLTLSWMR---LAVDCLSELHTNIANLITDLELPVSDW 92
Query: 102 LDRFVAEFFERSLKALDTFNATRDGIEKIRLWQKHLEIVQCALDSHKRTISEGQSRRARK 161
D++V + S+K LD A + ++ Q L+ L S S+ Q +RA
Sbjct: 93 DDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEP 152
Query: 162 AL---MDLALTMLDEKDSGSVFSQRNRSFGRHNTSKDHHHRLPGHSRSLSWSVSRSWSAA 218
+L M+L R P R S +
Sbjct: 153 SLREWMELVGV-----------------------------RCP-----------RLVSCS 172
Query: 219 KQLQSIANSLAPPRGNDIAATNGLVVSVFAMSSVLLFVLWTLVAAIPCQDRGLNVHFSIP 278
LQ +A +L+ + + L+ +++ + SV +FV VA + + L V +P
Sbjct: 173 ATLQELAGNLSLMKVKNSVKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPL-VELHVP 231
Query: 279 RQFSWGVPLLSLHERITEESKKRERRNSNGLLYEIYLIDKCARQLTDLLDVAQFPLPEEQ 338
+F W LH ++EE ++ S + E+ ++ CA++L L +Q EE+
Sbjct: 232 EKFGWSQAFNDLHTAVSEELTRQLAGGSVAAVKELEEVEACAKRLHVLASTSQL---EEE 288
Query: 339 KIELEHGI 346
L + +
Sbjct: 289 AANLANAV 296
>sp|Q9SYZ8|U496B_ARATH UPF0496 protein At4g34330 OS=Arabidopsis thaliana GN=At4g34330 PE=3
SV=1
Length = 354
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 25 REQVHSVEGHHDSSAEELELESFHRQIADH----FNALSAVADDELLSIAWIQKLLYAFV 80
R + + + E++E++SF ++ + L+ + LS ++ ++ + +
Sbjct: 15 RNYTTELRSYEAACKEDMEIQSFDTRMQARTSHVISTLATGVEVRSLSFDSLKAVIGSLL 74
Query: 81 CCQEEFRAILLKDKALVLK-PPLDRFVAEFFERSLKALDTFNATRDGIEKIRLWQKHLEI 139
+E ++L K + K + FV +FE SLK LD FNA + G++ +++ HL I
Sbjct: 75 DMNQEVAKVILDCKKDIWKNQEMFEFVEAYFETSLKTLDFFNALKRGLQGVQI--NHLFI 132
Query: 140 VQCALDSHKRTISE 153
+ + +K+T+ E
Sbjct: 133 LDG--NGYKKTLQE 144
>sp|A1SX09|RLMKL_PSYIN Ribosomal RNA large subunit methyltransferase K/L OS=Psychromonas
ingrahamii (strain 37) GN=rlmL PE=3 SV=1
Length = 749
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 98 LKPPLDRFVAEFFERSLKALDTFN--ATRDGIEKIRLWQKHLEIVQCALDSHKRTI---- 151
+KP + + EF R LK L A R+G+E RL+ L A+D + I
Sbjct: 432 IKPAI--YAEEFANRLLKNLKQLEKWAKREGVECYRLYDADLPEYNVAIDRYAEYIIIQE 489
Query: 152 ----SEGQSRRARKALMDLALT---MLDEKDSGSVFSQRNRSFGRHNTSK 194
E ++++ R+ +D+ T +L+ D V R R GR K
Sbjct: 490 YRAPKEIETQKVRRRFLDVVSTVRYVLNLPDDKLVIKVRERQKGRQQYEK 539
>sp|Q21ZA0|ATPF2_RHOFD ATP synthase subunit b 2 OS=Rhodoferax ferrireducens (strain DSM
15236 / ATCC BAA-621 / T118) GN=atpF2 PE=3 SV=1
Length = 326
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 9/55 (16%)
Query: 141 QCALDSHKRTISEGQSRRAR--------KALMDLALTMLDEKDSGSVFSQRNRSF 187
Q AL S +R++SE S RAR KAL DLA T L+E+ G VF++R R
Sbjct: 107 QEALRSAQRSMSEALSHRARDEVFAIARKALGDLATTSLEER-MGEVFTRRLREM 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,036,432
Number of Sequences: 539616
Number of extensions: 5407890
Number of successful extensions: 14883
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 14876
Number of HSP's gapped (non-prelim): 13
length of query: 390
length of database: 191,569,459
effective HSP length: 119
effective length of query: 271
effective length of database: 127,355,155
effective search space: 34513247005
effective search space used: 34513247005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)