Query 016376
Match_columns 390
No_of_seqs 157 out of 271
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:18:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05633 DUF793: Protein of un 100.0 2E-100 3E-105 757.4 39.9 377 1-385 1-389 (389)
2 PF05055 DUF677: Protein of un 100.0 1.5E-27 3.2E-32 235.5 19.2 314 44-385 1-336 (336)
3 PF03087 DUF241: Arabidopsis p 99.9 1.2E-22 2.5E-27 192.3 23.1 228 75-384 2-231 (231)
4 KOG4191 Histone acetyltransfer 82.9 12 0.00026 38.8 10.6 109 263-380 358-468 (516)
5 PF01601 Corona_S2: Coronaviru 75.2 17 0.00037 39.1 9.3 129 244-385 204-337 (610)
6 PF10805 DUF2730: Protein of u 68.0 32 0.00069 28.7 7.7 55 314-371 45-99 (106)
7 TIGR02894 DNA_bind_RsfA transc 63.6 1.2E+02 0.0025 27.5 11.2 104 279-382 47-156 (161)
8 TIGR01834 PHA_synth_III_E poly 62.5 51 0.0011 33.0 9.2 81 282-367 236-319 (320)
9 KOG0994 Extracellular matrix g 53.6 1.1E+02 0.0023 36.0 10.5 97 283-381 1169-1269(1758)
10 PF07956 DUF1690: Protein of U 53.3 78 0.0017 27.9 7.9 87 290-388 36-123 (142)
11 PF03670 UPF0184: Uncharacteri 53.1 90 0.002 25.1 7.4 50 338-387 27-76 (83)
12 PRK11637 AmiB activator; Provi 51.4 2.9E+02 0.0064 28.4 14.6 21 342-362 101-121 (428)
13 PHA02047 phage lambda Rz1-like 50.5 66 0.0014 26.6 6.3 45 342-386 32-76 (101)
14 PRK11637 AmiB activator; Provi 44.5 3.7E+02 0.0081 27.6 13.5 30 341-370 93-122 (428)
15 PRK04654 sec-independent trans 42.6 94 0.002 29.3 6.9 43 254-300 9-52 (214)
16 PF15546 DUF4653: Domain of un 40.9 50 0.0011 30.8 4.8 39 349-387 191-229 (239)
17 PF05531 NPV_P10: Nucleopolyhe 36.7 1.2E+02 0.0027 23.9 5.7 29 345-373 36-64 (75)
18 PF02403 Seryl_tRNA_N: Seryl-t 36.6 2.3E+02 0.0051 23.0 8.6 35 337-371 67-101 (108)
19 PF11932 DUF3450: Protein of u 35.6 2.9E+02 0.0062 26.3 9.5 19 309-327 54-72 (251)
20 PF07889 DUF1664: Protein of u 33.1 2.6E+02 0.0057 24.2 7.8 30 345-374 83-112 (126)
21 PHA01750 hypothetical protein 33.1 1.3E+02 0.0029 23.1 5.2 13 357-369 55-67 (75)
22 PRK00708 sec-independent trans 32.5 1.6E+02 0.0034 27.8 6.7 15 254-268 9-23 (209)
23 KOG1656 Protein involved in gl 32.0 2.7E+02 0.0059 26.2 8.1 76 38-129 74-149 (221)
24 PF07889 DUF1664: Protein of u 31.4 3.5E+02 0.0075 23.4 9.8 13 312-324 69-81 (126)
25 KOG0995 Centromere-associated 31.1 7E+02 0.015 27.1 11.9 52 311-364 308-359 (581)
26 PF10198 Ada3: Histone acetylt 30.5 3.5E+02 0.0076 23.5 8.2 38 342-380 63-100 (131)
27 TIGR03185 DNA_S_dndD DNA sulfu 30.0 5.2E+02 0.011 28.2 11.4 68 309-379 396-463 (650)
28 PF05377 FlaC_arch: Flagella a 29.2 1.8E+02 0.0039 21.6 5.2 15 311-325 7-21 (55)
29 PF11172 DUF2959: Protein of u 29.2 3.2E+02 0.0069 25.6 8.1 57 314-373 42-100 (201)
30 PHA02675 ORF104 fusion protein 29.1 2.6E+02 0.0056 22.6 6.4 33 344-376 44-76 (90)
31 PF10018 Med4: Vitamin-D-recep 28.8 3.8E+02 0.0083 24.4 8.7 39 347-385 25-63 (188)
32 PF12761 End3: Actin cytoskele 27.6 5.1E+02 0.011 24.2 9.3 34 352-386 161-194 (195)
33 PF09006 Surfac_D-trimer: Lung 27.5 1.5E+02 0.0033 21.1 4.3 28 355-382 3-30 (46)
34 PF09059 TyeA: TyeA; InterPro 27.3 2.1E+02 0.0045 23.2 5.8 65 55-128 9-82 (87)
35 COG2433 Uncharacterized conser 26.3 4.3E+02 0.0094 28.9 9.5 28 341-368 440-467 (652)
36 PF12153 CAP18_C: LPS binding 26.3 1.3E+02 0.0028 19.2 3.4 24 349-372 4-27 (28)
37 PF06419 COG6: Conserved oligo 26.2 4.9E+02 0.011 28.5 10.3 66 309-386 36-103 (618)
38 PF07106 TBPIP: Tat binding pr 26.0 4.6E+02 0.01 23.2 8.6 52 310-365 85-137 (169)
39 PF04380 BMFP: Membrane fusoge 25.7 2.1E+02 0.0047 22.4 5.6 29 336-364 49-77 (79)
40 PF12652 CotJB: CotJB protein; 25.5 3E+02 0.0064 21.8 6.3 53 309-363 4-56 (78)
41 PF15188 CCDC-167: Coiled-coil 25.3 3.4E+02 0.0075 21.9 6.7 57 309-365 3-64 (85)
42 KOG0837 Transcriptional activa 25.2 3.1E+02 0.0067 26.8 7.5 37 341-377 231-267 (279)
43 PF05529 Bap31: B-cell recepto 25.1 2.8E+02 0.006 25.2 7.1 30 342-371 159-188 (192)
44 PF10267 Tmemb_cc2: Predicted 24.6 2.4E+02 0.0053 29.1 7.2 34 341-374 266-303 (395)
45 smart00340 HALZ homeobox assoc 24.6 1.2E+02 0.0026 21.3 3.3 27 345-371 6-32 (44)
46 KOG1760 Molecular chaperone Pr 24.3 4.7E+02 0.01 22.7 8.9 79 284-371 22-115 (131)
47 PF15290 Syntaphilin: Golgi-lo 24.0 4.5E+02 0.0097 26.0 8.3 41 341-381 121-161 (305)
48 PLN02372 violaxanthin de-epoxi 24.0 6.3E+02 0.014 26.4 9.7 34 352-385 402-437 (455)
49 PF04799 Fzo_mitofusin: fzo-li 23.9 1.9E+02 0.0041 26.4 5.5 23 341-363 141-163 (171)
50 PF03962 Mnd1: Mnd1 family; I 23.8 5.7E+02 0.012 23.4 9.1 6 281-286 55-60 (188)
51 KOG0982 Centrosomal protein Nu 23.6 3.5E+02 0.0075 28.4 7.8 50 337-386 311-363 (502)
52 smart00338 BRLZ basic region l 23.2 2.9E+02 0.0063 20.4 5.7 35 345-379 27-61 (65)
53 PF08654 DASH_Dad2: DASH compl 23.1 4.4E+02 0.0096 21.9 9.2 44 341-384 25-71 (103)
54 KOG0981 DNA topoisomerase I [R 22.8 3E+02 0.0065 30.0 7.4 70 207-296 578-647 (759)
55 PF06825 HSBP1: Heat shock fac 22.7 3.2E+02 0.0069 20.1 5.5 22 349-370 26-47 (54)
56 PF10393 Matrilin_ccoil: Trime 22.1 2E+02 0.0043 20.6 4.2 25 342-366 21-45 (47)
57 PF04782 DUF632: Protein of un 22.1 6.3E+02 0.014 25.2 9.3 14 155-168 12-25 (312)
58 PHA03386 P10 fibrous body prot 21.8 4.3E+02 0.0093 21.7 6.5 31 340-370 22-55 (94)
59 PF06120 Phage_HK97_TLTM: Tail 21.1 4.3E+02 0.0092 26.4 7.8 23 246-268 4-26 (301)
60 TIGR03779 Bac_Flav_CT_M Bacter 20.9 9.6E+02 0.021 25.0 11.9 30 341-370 147-176 (410)
61 KOG2196 Nuclear porin [Nuclear 20.6 7.8E+02 0.017 23.8 11.0 63 310-381 95-157 (254)
62 PF09177 Syntaxin-6_N: Syntaxi 20.4 4.6E+02 0.0099 21.0 7.1 30 340-369 35-64 (97)
63 KOG2991 Splicing regulator [RN 20.3 5.4E+02 0.012 25.2 8.0 28 341-368 282-309 (330)
64 PF08203 RNA_polI_A14: Yeast R 20.2 69 0.0015 25.3 1.7 42 97-138 13-69 (76)
65 PF10392 COG5: Golgi transport 20.1 5.5E+02 0.012 21.9 8.9 41 341-381 69-109 (132)
66 COG3883 Uncharacterized protei 20.1 6.5E+02 0.014 24.6 8.7 20 310-329 51-70 (265)
No 1
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=100.00 E-value=1.6e-100 Score=757.37 Aligned_cols=377 Identities=53% Similarity=0.882 Sum_probs=354.8
Q ss_pred CCCCCCCCCCCCCCCCCcchhhhhhhhcccCCCCCCC--chhhHhHHHHHHHHHHHHhhhcccCC--cccccHHHHHHHH
Q 016376 1 MPSTDNQGSSSPFHSFGRSIWSIRREQVHSVEGHHDS--SAEELELESFHRQIADHFNALSAVAD--DELLSIAWIQKLL 76 (390)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~r~~~~~~~~~~~~~--~~~~~~l~~F~~~L~~rl~~L~~~~~--~~~LSl~wl~~~l 76 (390)
|||||||| ||+++||+||+||++|+++|.+ +.++++|++|+++|++||.+|.++++ +++|||+||+++|
T Consensus 1 mpat~~~~-------~~~s~ls~rr~~~~~~~~~~~~~~~~~~~~L~~Fq~~va~rl~~L~~~~~~~~~~LSL~W~~~~l 73 (389)
T PF05633_consen 1 MPATDYQG-------FGRSLLSLRRDQVHSMSHNHEQEAESLEAELEAFQRHVAERLSDLSPSSKDSDDFLSLSWMRKAL 73 (389)
T ss_pred CCCccccc-------ccchhhhccccCCCCCCCCcccccccchhhHHHHHHHHHHHHHHhccCcCcccccccHHHHHHHH
Confidence 99999999 7889999999999999988864 44678999999999999999999864 7899999999999
Q ss_pred HHHHHHHHHHHHHHhhhhh-hhcCChhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhH
Q 016376 77 YAFVCCQEEFRAILLKDKA-LVLKPPLDRFVAEFFERSLKALDTFNATRDGIEKIRLWQKHLEIVQCALDSHKRTISEGQ 155 (390)
Q Consensus 77 ~~l~~~h~~~~~Li~~~~~-~v~~~~~~kwvdeYlD~S~klLDvCnal~~~i~~~~~~~~~l~~al~~l~~~~~~~~~~~ 155 (390)
++|++||++|++||++++. |+++||+||||+||||+|||+||||||++++|+++|+|++++++|+|+|++. ++++++|
T Consensus 74 d~~l~~~~efr~li~~~~~~~~s~~~~dk~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~-~~~~~~~ 152 (389)
T PF05633_consen 74 DSFLCCHEEFRALITNLRDLPLSKPPDDKWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHALDSS-RPLGEGQ 152 (389)
T ss_pred HHHHHHHHHHHHHHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcHHH
Confidence 9999999999999999887 9999999999999999999999999999999999999999999999999974 7889999
Q ss_pred HHHHHHHHHHHHHHhhcccccccc-cccccccccccCCCCCCC-----CCCCCCccccchhhhhhhhHHHHHHHHHhhCC
Q 016376 156 SRRARKALMDLALTMLDEKDSGSV-FSQRNRSFGRHNTSKDHH-----HRLPGHSRSLSWSVSRSWSAAKQLQSIANSLA 229 (390)
Q Consensus 156 ~rRa~~aL~~l~~~m~~~~~~~~~-~~~r~~s~~r~~~~k~~~-----~~~~~~~~~ls~~~~~~w~a~~~L~~m~~~l~ 229 (390)
++|||++|.+|..+|+++++.+.. ..+|||+|+|...++..+ +++.+|||+|||+|||+|||++||++|+++|.
T Consensus 153 ~rRAr~aL~dl~~~~~~~~~~~~~~~~~rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~m~~nL~ 232 (389)
T PF05633_consen 153 LRRARKALSDLKIAMLDDKDSGSSGGSHRNRSFGRSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQAMGENLV 232 (389)
T ss_pred HHHHHHHHHHHHHHHhcccccCcccccccccccccccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999888777664 569999999976532211 23568999999999999999999999999999
Q ss_pred CCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccc-CCCCCcchHHHHHHHHHHHHHHHHhhhcccch
Q 016376 230 PPRGNDIAATNGLVVSVFAMSSVLLFVLWTLVAAIPCQDRGLNVHFS-IPRQFSWGVPLLSLHERITEESKKRERRNSNG 308 (390)
Q Consensus 230 ~pk~~~~~~~~~l~~~ly~~~~vt~~v~~vL~aai~~~~~~~~~~l~-vp~~~~W~~~l~~Lq~rv~~E~~~~~~~g~~~ 308 (390)
.||++++++++|++.+||+|++||+||||+||+|+||+++++.+|++ +|++++|+.+|..||+||.+|+++++++|+++
T Consensus 233 ~Pk~~esak~~gL~~A~Y~m~~vtvFV~~vlVAA~pc~~rgL~~~l~~vP~~~~WA~s~~~LQ~rI~eEikkk~~kgs~g 312 (389)
T PF05633_consen 233 LPKGKESAKGRGLLRAMYGMKSVTVFVCWVLVAAFPCQDRGLQVHLSAVPRQFSWAPSFISLQERINEEIKKKERKGSCG 312 (389)
T ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHHHHHeeecCCccccCCCCCCccccccchHHHHHHHHHHHHHhhccccCcch
Confidence 99999999999999999999999999999999999999988889999 89999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHhhhc
Q 016376 309 LLYEIYLIDKCARQLTDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRTEGLEFL 385 (390)
Q Consensus 309 ~l~El~~v~~av~~L~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~LLd~l 385 (390)
+|+||++|++++++|++.+|+++||.++|+.+++++.|+||+++|+.|++|||||++|||+|||+||++|+++||.|
T Consensus 313 LLkEl~~ve~~vr~L~el~d~~~~p~~~e~~~ev~~~V~EL~~~~~~L~~GLdpLerqVre~Fh~IV~sR~elLd~l 389 (389)
T PF05633_consen 313 LLKELQQVEASVRELHELIDSFQFPLEEEKEEEVREAVEELARVCEALSQGLDPLERQVREVFHRIVRSRTELLDSL 389 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=99.95 E-value=1.5e-27 Score=235.51 Aligned_cols=314 Identities=19% Similarity=0.235 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHhhhcccC----CcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-ChhhhHHHHHHHhhHHHHH
Q 016376 44 LESFHRQIADHFNALSAVA----DDELLSIAWIQKLLYAFVCCQEEFRAILLKDKALVLK-PPLDRFVAEFFERSLKALD 118 (390)
Q Consensus 44 l~~F~~~L~~rl~~L~~~~----~~~~LSl~wl~~~l~~l~~~h~~~~~Li~~~~~~v~~-~~~~kwvdeYlD~S~klLD 118 (390)
|++|++.|.+|++.++.+. +...+|++.+.++.++|+++++++.++|++++..+|+ +....+|.+|||.|.+++|
T Consensus 1 l~~fd~~l~~~t~~~i~sl~~~~~~~s~s~~s~~~~t~~Lle~~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~ 80 (336)
T PF05055_consen 1 LQSFDSSLQERTNRVISSLATGVETRSLSFDSLKEVTECLLEMNQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASD 80 (336)
T ss_pred CCCccHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHhCCChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHH
Confidence 4689999999999999872 3478999999999999999999999999999999998 7779999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-hhHHHHHHHHHHHHHHHhhcccccccccc-----cccccccccCC
Q 016376 119 TFNATRDGIEKIRLWQKHLEIVQCALDSHKRTIS-EGQSRRARKALMDLALTMLDEKDSGSVFS-----QRNRSFGRHNT 192 (390)
Q Consensus 119 vCnal~~~i~~~~~~~~~l~~al~~l~~~~~~~~-~~~~rRa~~aL~~l~~~m~~~~~~~~~~~-----~r~~s~~r~~~ 192 (390)
+|+++..+|.++|..++.++.+++.++....+-. +..-.++.+++.++..+ +..++||. ..++++++.+
T Consensus 81 ~C~~L~k~I~~aR~~~~~I~~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~F----~~~~NPFs~~~~~~~F~~i~~~~- 155 (336)
T PF05055_consen 81 FCEALLKCIHRARDNYLPIRRALKQFEKESLDTDVGVSQKKYDKTLEELKKF----KAAGNPFSDEEFFHQFQSIHDQQ- 155 (336)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccchhHHHHHHHHHhh----hhcCCCCCchhHHHHHHHHHHHH-
Confidence 9999999999999999999999999975321110 01124455788888874 24555643 2333333321
Q ss_pred CCCCCCCCCCCccccchhhhhhhhHHHHHHHHHhhCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCC-CC
Q 016376 193 SKDHHHRLPGHSRSLSWSVSRSWSAAKQLQSIANSLAPPRGNDIAATNGLVVSVFAMSSVLLFVLWTLVAAIPCQDR-GL 271 (390)
Q Consensus 193 ~k~~~~~~~~~~~~ls~~~~~~w~a~~~L~~m~~~l~~pk~~~~~~~~~l~~~ly~~~~vt~~v~~vL~aai~~~~~-~~ 271 (390)
-+-...|++..+|+. .|-+.....+.++++++++.++++.|+++++++++.++. +.
T Consensus 156 ----------------------~~Ll~kL~~~k~Kl~-kklk~~r~~~kvs~v~fvaa~~aV~i~svv~aa~a~~~vv~~ 212 (336)
T PF05055_consen 156 ----------------------SSLLEKLDSRKKKLR-KKLKLVRTWRKVSNVCFVAAFVAVAIASVVAAAHAVPAVVAL 212 (336)
T ss_pred ----------------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 022234444444432 011111112568899999999999999999999866653 32
Q ss_pred cccccCCCC--CcchHHHHHHHHHHHHHHHH---hhhcccchhHHHHHHHHHHHHHHHHHhhh----ccCCCChh-hHHH
Q 016376 272 NVHFSIPRQ--FSWGVPLLSLHERITEESKK---RERRNSNGLLYEIYLIDKCARQLTDLLDV----AQFPLPEE-QKIE 341 (390)
Q Consensus 272 ~~~l~vp~~--~~W~~~l~~Lq~rv~~E~~~---~~~~g~~~~l~El~~v~~av~~L~~~id~----~~~~~~~e-~~~~ 341 (390)
+..+.+|-. ++|..++++-+++..+..+. ...+|++++.++|+.|...|.+|+..|+. ++|+++.+ +...
T Consensus 213 aa~~a~P~~~~gkw~~~~~~k~~~al~~~~~~l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~ 292 (336)
T PF05055_consen 213 AAALAAPIGSVGKWCGSLWKKYEEALKKQKEQLDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEA 292 (336)
T ss_pred HHHHccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchh
Confidence 223345643 46999988887765444333 45689999999999999999999999987 34554433 3456
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHhhhc
Q 016376 342 LEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRTEGLEFL 385 (390)
Q Consensus 342 v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~LLd~l 385 (390)
++..++||+++.+.|.+-||.|+++|.-||+.|-++|+.+|+-+
T Consensus 293 vk~vv~el~k~~~~f~~qleELeehv~lC~~tInrAR~lVlq~I 336 (336)
T PF05055_consen 293 VKEVVKELKKNVESFTEQLEELEEHVYLCFKTINRARTLVLQEI 336 (336)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 89999999999999999999999999999999999999998743
No 3
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=99.91 E-value=1.2e-22 Score=192.35 Aligned_cols=228 Identities=15% Similarity=0.223 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHHhh--hhhhhcCChhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 016376 75 LLYAFVCCQEEFRAILLK--DKALVLKPPLDRFVAEFFERSLKALDTFNATRDGIEKIRLWQKHLEIVQCALDSHKRTIS 152 (390)
Q Consensus 75 ~l~~l~~~h~~~~~Li~~--~~~~v~~~~~~kwvdeYlD~S~klLDvCnal~~~i~~~~~~~~~l~~al~~l~~~~~~~~ 152 (390)
.|..|.++|+++..|+.. .++++.++. ++|||++||+|++|||+|++++|.+.+++++...+|.++..=+++
T Consensus 2 gL~~L~~Ly~~~~ell~lp~tq~al~~~~-~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRRr~~~----- 75 (231)
T PF03087_consen 2 GLSGLKDLYECLEELLQLPSTQQALSHHQ-EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRRRDDG----- 75 (231)
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-----
Confidence 367889999999999986 788888777 999999999999999999999999999999999999997665411
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCCCCCCCCCCccccchhhhhhhhHHHHHHHHHhhCCCCC
Q 016376 153 EGQSRRARKALMDLALTMLDEKDSGSVFSQRNRSFGRHNTSKDHHHRLPGHSRSLSWSVSRSWSAAKQLQSIANSLAPPR 232 (390)
Q Consensus 153 ~~~~rRa~~aL~~l~~~m~~~~~~~~~~~~r~~s~~r~~~~k~~~~~~~~~~~~ls~~~~~~w~a~~~L~~m~~~l~~pk 232 (390)
+ +.-..++....+ ++ .+ | .+. ++++.++.+.++ ..+.
T Consensus 76 ~--~~~~i~sy~~~r----------------Kk--~k----K--------~i~----------K~~~~lk~~~~~-~~~~ 112 (231)
T PF03087_consen 76 S--IESEIASYIRSR----------------KK--AK----K--------EIA----------KLLRSLKRMSNK-SSSS 112 (231)
T ss_pred h--HHHHHHHHHHHH----------------HH--HH----H--------HHH----------HHHHHHHhhhcc-cCCC
Confidence 0 110111111111 11 00 0 001 455666666665 2221
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCCCcchHHHHHHHHHHHHHHHHhhhcccchhHHH
Q 016376 233 GNDIAATNGLVVSVFAMSSVLLFVLWTLVAAIPCQDRGLNVHFSIPRQFSWGVPLLSLHERITEESKKRERRNSNGLLYE 312 (390)
Q Consensus 233 ~~~~~~~~~l~~~ly~~~~vt~~v~~vL~aai~~~~~~~~~~l~vp~~~~W~~~l~~Lq~rv~~E~~~~~~~g~~~~l~E 312 (390)
....-....+..++.++..+|+.+|..++.+++.|. . .|+..+|+.....++.+..+.... ...+|
T Consensus 113 ~~~~~~~~~vv~~l~ea~~~t~si~~sll~~ls~~~-~------~~~~~~wslvsk~~~~~~~~~~~~-------~~~~e 178 (231)
T PF03087_consen 113 NDDDEHLSAVVRVLREAREITVSIFESLLSFLSSPS-K------KSKSSKWSLVSKLMQKKRSCDSSE-------ENRNE 178 (231)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-c------cccccchhHHHHHHhcccccchhH-------HHHHH
Confidence 111112356889999999999999999999998754 1 266778999977777765432111 14688
Q ss_pred HHHHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHhhh
Q 016376 313 IYLIDKCARQLTDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRTEGLEF 384 (390)
Q Consensus 313 l~~v~~av~~L~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~LLd~ 384 (390)
+..++.+... +++++..+++++++|+.|++.||+|+| .+||++|++|+.||||
T Consensus 179 ~~~~d~~~~~------------~~e~~~~~~~~Le~LE~~Ie~lE~glE-------~vFR~LIktRVSLLNI 231 (231)
T PF03087_consen 179 FEKVDAALKS------------DEEEVQNAQKRLEELEECIEELEEGLE-------CVFRRLIKTRVSLLNI 231 (231)
T ss_pred HHHHHHHhhh------------hhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcC
Confidence 8888877653 245566789999999999999999999 9999999999999996
No 4
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=82.92 E-value=12 Score=38.82 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=59.8
Q ss_pred hcccCCCCCcccccCCCCCcchHHHHHHHHHHHHHHHHhh--hcccchhHHHHHHHHHHHHHHHHHhhhccCCCChhhHH
Q 016376 263 AIPCQDRGLNVHFSIPRQFSWGVPLLSLHERITEESKKRE--RRNSNGLLYEIYLIDKCARQLTDLLDVAQFPLPEEQKI 340 (390)
Q Consensus 263 ai~~~~~~~~~~l~vp~~~~W~~~l~~Lq~rv~~E~~~~~--~~g~~~~l~El~~v~~av~~L~~~id~~~~~~~~e~~~ 340 (390)
+-+.+++.....+.+|-+-+ +-+|+.+|.+... -.+..+.-..-+.|-+-+++|...+..+..- +.+.-.
T Consensus 358 ~as~~~rn~~~~~~~ph~~s-------~E~RLK~eL~~~Gll~ded~pasdddDEvlaeLR~lqaeLk~vS~~-N~k~k~ 429 (516)
T KOG4191|consen 358 GASTSPRNQNKPFSVPHTKS-------LESRLKEELIAQGLLEDEDRPASDDDDEVLAELRKLQAELKAVSAH-NRKKKH 429 (516)
T ss_pred hhccCCcccCCcccCccccC-------HHHHHHHHHHHhccccccCCCcccchHHHHHHHHHHHHHHHHHHhh-hHHHHH
Confidence 33455653345566776543 6677777776632 0111222222333444444444444332111 122222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHH
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRTE 380 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~ 380 (390)
.+...+.| +-..+.+.+-||.|.+||.+.|..+++.|++
T Consensus 430 ~Ll~la~e-E~a~qe~~q~lddlDkqI~qaYvKr~r~~kk 468 (516)
T KOG4191|consen 430 DLLRLAPE-EMARQEFQQVLDDLDKQIEQAYVKRNRSRKK 468 (516)
T ss_pred HHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33332222 2356789999999999999999999999975
No 5
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=75.23 E-value=17 Score=39.14 Aligned_cols=129 Identities=10% Similarity=0.080 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCCCcchHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Q 016376 244 VSVFAMSSVLLFVLWTLVAAIPCQDRGLNVHFSIPRQFSWGVPLLSLHERITEESKKRERRNSNGLLYEIYLIDKCARQL 323 (390)
Q Consensus 244 ~~ly~~~~vt~~v~~vL~aai~~~~~~~~~~l~vp~~~~W~~~l~~Lq~rv~~E~~~~~~~g~~~~l~El~~v~~av~~L 323 (390)
.++|+...+.-++++.+.+|.+=|= +.++-.++---..=-..|.+-|+.++.--.+.. | ..-.-|..+..|+.++
T Consensus 204 ~a~YT~sL~g~m~~ggitsaaaIPF-s~~vQ~RlN~val~t~VL~~NQk~iA~sFN~Ai--~--~I~~g~~t~~~Al~Ki 278 (610)
T PF01601_consen 204 MAMYTASLTGGMAFGGITSAAAIPF-STAVQARLNYVALQTDVLQENQKIIANSFNKAI--G--NIQLGFTTTASALNKI 278 (610)
T ss_dssp -------------------------------------SHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccceecch-HHHHHHHhcceeeeHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHH
Confidence 6889999888888887644442221 111100100001113455555666655322221 0 1223566666777776
Q ss_pred HHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHH-----HHHHHHHHHHHhhhc
Q 016376 324 TDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKNELDPLERQLREV-----FRSIMNMRTEGLEFL 385 (390)
Q Consensus 324 ~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~l-----F~~Iv~~R~~LLd~l 385 (390)
...+ ....+.+...+.+|...++++..-+.+|-.++|.+ =||+|.||..-|+.+
T Consensus 279 Q~VV--------N~q~~aL~~L~~qL~nnF~AISssI~dIy~RLd~leAdaQVDRLItGRL~aLnaf 337 (610)
T PF01601_consen 279 QDVV--------NQQGQALNQLTSQLSNNFGAISSSIQDIYNRLDQLEADAQVDRLITGRLAALNAF 337 (610)
T ss_dssp HHHH--------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHH--------HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHH
Confidence 6655 23444555555555554444444444333333333 478999999988764
No 6
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=68.04 E-value=32 Score=28.69 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH
Q 016376 314 YLIDKCARQLTDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKNELDPLERQLREVF 371 (390)
Q Consensus 314 ~~v~~av~~L~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF 371 (390)
...+.-+..+...++.. | +.++...++..+.+++..+..++..++++..+++=+-
T Consensus 45 ~~~~~Rl~~lE~~l~~L--P-t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHL--P-TRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHHHHhC--C-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555432 3 4567788999999999999999999999988887553
No 7
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=63.56 E-value=1.2e+02 Score=27.52 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=62.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHHHHHHHHHhhhcc-CCC----ChhhHHHHHHHHHHHHHH
Q 016376 279 RQFSWGVPLLSLHERITEESKKRERRNS-NGLLYEIYLIDKCARQLTDLLDVAQ-FPL----PEEQKIELEHGIQELTLV 352 (390)
Q Consensus 279 ~~~~W~~~l~~Lq~rv~~E~~~~~~~g~-~~~l~El~~v~~av~~L~~~id~~~-~~~----~~e~~~~v~~~veeL~~~ 352 (390)
=+|.|...+.+=|+...+..++..+.+. ....-.++.|=..++.+........ ... -.++...++..++.|+.-
T Consensus 47 CGFRWNs~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e 126 (161)
T TIGR02894 47 CGFRWNAYVRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKE 126 (161)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999988877766544333221111 1111224555555555543211000 000 012334677888888888
Q ss_pred HHHHhhhhhHHHHHHhHHHHHHHHHHHHHh
Q 016376 353 CEVLKNELDPLERQLREVFRSIMNMRTEGL 382 (390)
Q Consensus 353 ~~~L~~GLe~L~~qV~~lF~~Iv~~R~~LL 382 (390)
.+.|...+..++..-..|+..+=++|+..+
T Consensus 127 ~~~L~~~~~~~~eDY~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 127 LEKLRQRLSTIEEDYQTLIDIMDRARKLAV 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888889999999999999998553
No 8
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=62.51 E-value=51 Score=33.03 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=52.5
Q ss_pred cchHHHHHHHHHHHH--HHHHhhhcccchhHHHHHHHHHHHHHHHHH-hhhccCCCChhhHHHHHHHHHHHHHHHHHHhh
Q 016376 282 SWGVPLLSLHERITE--ESKKRERRNSNGLLYEIYLIDKCARQLTDL-LDVAQFPLPEEQKIELEHGIQELTLVCEVLKN 358 (390)
Q Consensus 282 ~W~~~l~~Lq~rv~~--E~~~~~~~g~~~~l~El~~v~~av~~L~~~-id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~ 358 (390)
-|....-..++.+.. |-.+.. .-+++-.-.++....++.+. +.....|. ..++.++.+++.||++.+..|+.
T Consensus 236 ~W~~~ae~~~~e~~~S~efak~~----G~lvna~m~lr~~~qe~~e~~L~~LnlPT-RsElDe~~krL~ELrR~vr~L~k 310 (320)
T TIGR01834 236 LWVIAAEEAYAEVFASEENAKVH----GKFINALMRLRIQQQEIVEALLKMLNLPT-RSELDEAHQRIQQLRREVKSLKK 310 (320)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666555532 222221 11445555556666666554 34456675 45677899999999999999999
Q ss_pred hhhHHHHHH
Q 016376 359 ELDPLERQL 367 (390)
Q Consensus 359 GLe~L~~qV 367 (390)
+|+.+++++
T Consensus 311 ~l~~l~~~~ 319 (320)
T TIGR01834 311 RLGDLEANP 319 (320)
T ss_pred HHHHhhhcC
Confidence 999888764
No 9
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=53.56 E-value=1.1e+02 Score=35.97 Aligned_cols=97 Identities=14% Similarity=0.200 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHH---hhhcccch-hHHHHHHHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhh
Q 016376 283 WGVPLLSLHERITEESKK---RERRNSNG-LLYEIYLIDKCARQLTDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKN 358 (390)
Q Consensus 283 W~~~l~~Lq~rv~~E~~~---~~~~g~~~-~l~El~~v~~av~~L~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~ 358 (390)
|-..+..|..|...=+.+ ....|-.+ .-.+|..++.-++.++..+.... +..++++++....++|++-++.+.+
T Consensus 1169 WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~s--vs~~~i~~l~~~~~~lr~~l~~~~e 1246 (1758)
T KOG0994|consen 1169 WDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPS--VSAEDIAQLASATESLRRQLQALTE 1246 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHH
Q 016376 359 ELDPLERQLREVFRSIMNMRTEG 381 (390)
Q Consensus 359 GLe~L~~qV~~lF~~Iv~~R~~L 381 (390)
-|-.++..+.++...+--+-++|
T Consensus 1247 ~L~~~E~~Lsdi~~~~~~a~~~L 1269 (1758)
T KOG0994|consen 1247 DLPQEEETLSDITNSLPLAGKDL 1269 (1758)
T ss_pred hhhhhhhhhhhhhhccchhhhhH
No 10
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=53.31 E-value=78 Score=27.91 Aligned_cols=87 Identities=20% Similarity=0.196 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH-HHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 016376 290 LHERITEESKKRERRNSNGLLYEIYLIDKCARQL-TDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKNELDPLERQLR 368 (390)
Q Consensus 290 Lq~rv~~E~~~~~~~g~~~~l~El~~v~~av~~L-~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~ 368 (390)
+|+||++|.++-.. .|...++.+.+.- ... +. ......-....+...++.|...++... -+..+....
T Consensus 36 iq~Rva~eL~~L~~-------~~~~~~~~~l~~~~~~e-d~-~~~~~~lSs~~v~~~i~~L~~kLe~~~-kl~~~~~~~- 104 (142)
T PF07956_consen 36 IQERVAEELKRLEE-------EELKKFEEALEKSLLSE-DE-KDQDPGLSSKSVNEEIEKLREKLEERK-KLRELKEEK- 104 (142)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHhhccc-cc-ccccccccHHHHHHHHHHHHHHHHHHH-HHHhccccc-
Confidence 49999999887532 3444444444321 110 11 000011123356666666666666442 222221111
Q ss_pred HHHHHHHHHHHHHhhhcCCC
Q 016376 369 EVFRSIMNMRTEGLEFLGSG 388 (390)
Q Consensus 369 ~lF~~Iv~~R~~LLd~l~~~ 388 (390)
-...+-.+|..|..+|+.-
T Consensus 105 -~~~~v~~aR~~vv~CL~~N 123 (142)
T PF07956_consen 105 -NSEEVEKARSAVVRCLREN 123 (142)
T ss_pred -cchhhHHHHHHHHHHHHHC
Confidence 2345678888888887643
No 11
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=53.12 E-value=90 Score=25.09 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHhhhcCC
Q 016376 338 QKIELEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRTEGLEFLGS 387 (390)
Q Consensus 338 ~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~LLd~l~~ 387 (390)
+...+-..++.|-.|++.|++..|.|..++.+|-.-=-..|.++=.-..+
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~~ 76 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLSK 76 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34466778888888888889999999988888888777777776444433
No 12
>PRK11637 AmiB activator; Provisional
Probab=51.39 E-value=2.9e+02 Score=28.43 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhH
Q 016376 342 LEHGIQELTLVCEVLKNELDP 362 (390)
Q Consensus 342 v~~~veeL~~~~~~L~~GLe~ 362 (390)
+...+++++..+..++.-++.
T Consensus 101 ~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 101 LNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444333333333
No 13
>PHA02047 phage lambda Rz1-like protein
Probab=50.47 E-value=66 Score=26.55 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHhhhcC
Q 016376 342 LEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRTEGLEFLG 386 (390)
Q Consensus 342 v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~LLd~l~ 386 (390)
.++.++.++..++.++..+..+.++|+.+-.+--+.|.++++-|.
T Consensus 32 ~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~ 76 (101)
T PHA02047 32 AHEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALD 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777888888888888888888888888888888775
No 14
>PRK11637 AmiB activator; Provisional
Probab=44.45 E-value=3.7e+02 Score=27.65 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHH
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLERQLREV 370 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~qV~~l 370 (390)
.++..+++++..+..++..++.++++++..
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555444
No 15
>PRK04654 sec-independent translocase; Provisional
Probab=42.61 E-value=94 Score=29.31 Aligned_cols=43 Identities=14% Similarity=0.181 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcccCCCCCcccccCCC-CCcchHHHHHHHHHHHHHHHH
Q 016376 254 LFVLWTLVAAIPCQDRGLNVHFSIPR-QFSWGVPLLSLHERITEESKK 300 (390)
Q Consensus 254 ~~v~~vL~aai~~~~~~~~~~l~vp~-~~~W~~~l~~Lq~rv~~E~~~ 300 (390)
++|..+++-.+-||.+ +. .+.+ -+.|..-+.+.-..+..|+.+
T Consensus 9 LLlI~VVALlV~GPer-LP---e~aRtlGk~irk~R~~~~~vk~El~~ 52 (214)
T PRK04654 9 LTLIAVVALVVLGPER-LP---KAARFAGLWVRRARMQWDSVKQELER 52 (214)
T ss_pred HHHHHHHHHHhcCchH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555567652 10 0111 145666666666666555544
No 16
>PF15546 DUF4653: Domain of unknown function (DUF4653)
Probab=40.89 E-value=50 Score=30.83 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHhhhcCC
Q 016376 349 LTLVCEVLKNELDPLERQLREVFRSIMNMRTEGLEFLGS 387 (390)
Q Consensus 349 L~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~LLd~l~~ 387 (390)
|-+++..|...|-+=...+-+-|+.|+..|++|+.++.+
T Consensus 191 Ll~Wir~LQ~~~~dQQ~RLQeSFDtILdnRKELiRclqq 229 (239)
T PF15546_consen 191 LLRWIRGLQHQLVDQQNRLQESFDTILDNRKELIRCLQQ 229 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 445666666666666666779999999999999999877
No 17
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=36.70 E-value=1.2e+02 Score=23.86 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHHHH
Q 016376 345 GIQELTLVCEVLKNELDPLERQLREVFRS 373 (390)
Q Consensus 345 ~veeL~~~~~~L~~GLe~L~~qV~~lF~~ 373 (390)
.|.+|..+++.+...|+.|+.+|.+.-+.
T Consensus 36 ~v~~l~~klDa~~~~l~~l~~~V~~I~~i 64 (75)
T PF05531_consen 36 DVTELNKKLDAQSAQLTTLNTKVNEIQDI 64 (75)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777766443
No 18
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=36.56 E-value=2.3e+02 Score=23.02 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH
Q 016376 337 EQKIELEHGIQELTLVCEVLKNELDPLERQLREVF 371 (390)
Q Consensus 337 e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF 371 (390)
++.+++...+.+++..+..++.-++.++.+++.+.
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888887777777654
No 19
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=35.61 E-value=2.9e+02 Score=26.28 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 016376 309 LLYEIYLIDKCARQLTDLL 327 (390)
Q Consensus 309 ~l~El~~v~~av~~L~~~i 327 (390)
+..|++++..-++.|....
T Consensus 54 L~~e~~~l~~e~e~L~~~~ 72 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYN 72 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665544
No 20
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.13 E-value=2.6e+02 Score=24.17 Aligned_cols=30 Identities=3% Similarity=0.118 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHHHHH
Q 016376 345 GIQELTLVCEVLKNELDPLERQLREVFRSI 374 (390)
Q Consensus 345 ~veeL~~~~~~L~~GLe~L~~qV~~lF~~I 374 (390)
..+.++.-+..++..++.+...|+.+++.+
T Consensus 83 i~~~i~~eV~~v~~dv~~i~~dv~~v~~~V 112 (126)
T PF07889_consen 83 ISKQIKDEVTEVREDVSQIGDDVDSVQQMV 112 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433
No 21
>PHA01750 hypothetical protein
Probab=33.12 E-value=1.3e+02 Score=23.06 Aligned_cols=13 Identities=46% Similarity=0.555 Sum_probs=4.8
Q ss_pred hhhhhHHHHHHhH
Q 016376 357 KNELDPLERQLRE 369 (390)
Q Consensus 357 ~~GLe~L~~qV~~ 369 (390)
....|.|++||.+
T Consensus 55 kikqDnl~~qv~e 67 (75)
T PHA01750 55 KIKQDELSRQVEE 67 (75)
T ss_pred HHhHHHHHHHHHH
Confidence 3333333333333
No 22
>PRK00708 sec-independent translocase; Provisional
Probab=32.53 E-value=1.6e+02 Score=27.84 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=8.6
Q ss_pred HHHHHHHHHhcccCC
Q 016376 254 LFVLWTLVAAIPCQD 268 (390)
Q Consensus 254 ~~v~~vL~aai~~~~ 268 (390)
++|+.+++..|-||.
T Consensus 9 LlvI~vVaLvV~GPk 23 (209)
T PRK00708 9 LLVIAIVLIVVVGPK 23 (209)
T ss_pred HHHHHHHHHhhcCch
Confidence 445555555566765
No 23
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.98 E-value=2.7e+02 Score=26.20 Aligned_cols=76 Identities=8% Similarity=0.022 Sum_probs=57.7
Q ss_pred chhhHhHHHHHHHHHHHHhhhcccCCcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCChhhhHHHHHHHhhHHHH
Q 016376 38 SAEELELESFHRQIADHFNALSAVADDELLSIAWIQKLLYAFVCCQEEFRAILLKDKALVLKPPLDRFVAEFFERSLKAL 117 (390)
Q Consensus 38 ~~~~~~l~~F~~~L~~rl~~L~~~~~~~~LSl~wl~~~l~~l~~~h~~~~~Li~~~~~~v~~~~~~kwvdeYlD~S~klL 117 (390)
++.+.-+.+|.+.+..-...|.+.. -..=.+.-|+.+.+.+...|+ .-+-.=||+.||+----.
T Consensus 74 E~qL~qidG~l~tie~Qr~alEnA~-~n~Evl~~m~~~A~AmK~~h~---------------~mDiDkVdd~MdeI~eQq 137 (221)
T KOG1656|consen 74 EKQLAQIDGTLSTIEFQREALENAN-TNTEVLDAMGSAAKAMKAAHK---------------NMDIDKVDDLMDEIAEQQ 137 (221)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHccc-ccHHHHHHHHHHHHHHHHHHh---------------ccChhHHHHHHHHHHHHH
Confidence 4566678888888888888888764 235556778888888877777 334556899999998888
Q ss_pred HHHHHHHHHHHH
Q 016376 118 DTFNATRDGIEK 129 (390)
Q Consensus 118 DvCnal~~~i~~ 129 (390)
++-.-|.++||.
T Consensus 138 e~a~eIseAiS~ 149 (221)
T KOG1656|consen 138 EVAEEISEAISA 149 (221)
T ss_pred HHHHHHHHHHhC
Confidence 888888888775
No 24
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=31.41 E-value=3.5e+02 Score=23.44 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 016376 312 EIYLIDKCARQLT 324 (390)
Q Consensus 312 El~~v~~av~~L~ 324 (390)
-++.++.-+++..
T Consensus 69 RId~vd~klDe~~ 81 (126)
T PF07889_consen 69 RIDRVDDKLDEQK 81 (126)
T ss_pred HHHHHHhhHHHHH
Confidence 3444444444433
No 25
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.05 E-value=7e+02 Score=27.10 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 016376 311 YEIYLIDKCARQLTDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKNELDPLE 364 (390)
Q Consensus 311 ~El~~v~~av~~L~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~ 364 (390)
.|++.+..-...|+..|+-- +...++++.+..--++|++.+..+..-+|.|.
T Consensus 308 eE~e~lq~~~d~Lk~~Ie~Q--~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 308 EEIEKLQKENDELKKQIELQ--GISGEDVERMNLERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred HHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777776542 23344444333333344444444444333333
No 26
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=30.49 E-value=3.5e+02 Score=23.46 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHH
Q 016376 342 LEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRTE 380 (390)
Q Consensus 342 v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~ 380 (390)
+...+++-.. -+.+..-++.+..+|.+.|...+++|..
T Consensus 63 L~~~~~e~ma-~QE~~~~l~~lD~~V~~aY~Kr~~~~~k 100 (131)
T PF10198_consen 63 LLKIAKEEMA-RQEYKRILDDLDKQVEQAYKKRMRARKK 100 (131)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444333 3444556899999999999999998863
No 27
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=29.98 E-value=5.2e+02 Score=28.24 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHH
Q 016376 309 LLYEIYLIDKCARQLTDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRT 379 (390)
Q Consensus 309 ~l~El~~v~~av~~L~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~ 379 (390)
+.+++..++.-+..+...+..+. ++++...+.+..+++...+..++.-++.+..++..+-..|.+.+.
T Consensus 396 ~~~~~~~~e~el~~l~~~l~~~~---~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKISTIP---SEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777776664321 234444555555555555555554444444444444444444333
No 28
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.21 E-value=1.8e+02 Score=21.58 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 016376 311 YEIYLIDKCARQLTD 325 (390)
Q Consensus 311 ~El~~v~~av~~L~~ 325 (390)
+|+.+++..+..++.
T Consensus 7 n~~~~~~~~i~tvk~ 21 (55)
T PF05377_consen 7 NELPRIESSINTVKK 21 (55)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 29
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=29.17 E-value=3.2e+02 Score=25.61 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhhhccCC-CC-hhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHH
Q 016376 314 YLIDKCARQLTDLLDVAQFP-LP-EEQKIELEHGIQELTLVCEVLKNELDPLERQLREVFRS 373 (390)
Q Consensus 314 ~~v~~av~~L~~~id~~~~~-~~-~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~ 373 (390)
++...+++.+...+ .|+ .+ +..-..+....+..+...+.+++.++.++...+.+|++
T Consensus 42 eQF~sALe~f~sl~---~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~E 100 (201)
T PF11172_consen 42 EQFKSALEQFKSLV---NFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDE 100 (201)
T ss_pred HHHHHHHHHHHHhh---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777665 232 22 22234677788888888888899999999999999986
No 30
>PHA02675 ORF104 fusion protein; Provisional
Probab=29.11 E-value=2.6e+02 Score=22.56 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHH
Q 016376 344 HGIQELTLVCEVLKNELDPLERQLREVFRSIMN 376 (390)
Q Consensus 344 ~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~ 376 (390)
+.-+.+..||..+.+.|+.|+++.+-+-+-+|.
T Consensus 44 k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~ 76 (90)
T PHA02675 44 DSYKTITDCCRETGARLDRLERHLETLREALLK 76 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777888888777777777665554
No 31
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.80 E-value=3.8e+02 Score=24.40 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHhhhc
Q 016376 347 QELTLVCEVLKNELDPLERQLREVFRSIMNMRTEGLEFL 385 (390)
Q Consensus 347 eeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~LLd~l 385 (390)
+++...+..|+..++.++.+++++=+.+..+|++|-..+
T Consensus 25 q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677778888888899999999999887776
No 32
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=27.59 E-value=5.1e+02 Score=24.17 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=24.7
Q ss_pred HHHHHhhhhhHHHHHHhHHHHHHHHHHHHHhhhcC
Q 016376 352 VCEVLKNELDPLERQLREVFRSIMNMRTEGLEFLG 386 (390)
Q Consensus 352 ~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~LLd~l~ 386 (390)
.+..+++-|+.|+.||+.|=..+ +.|+..|+-|+
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L-~~k~~eL~~L~ 194 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHL-SSKKQELQQLR 194 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 35666778888888887775554 78888887765
No 33
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=27.52 E-value=1.5e+02 Score=21.15 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=15.1
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHHHHHh
Q 016376 355 VLKNELDPLERQLREVFRSIMNMRTEGL 382 (390)
Q Consensus 355 ~L~~GLe~L~~qV~~lF~~Iv~~R~~LL 382 (390)
.|+.-++.|+.||+.|=...-.-+++.|
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKKa~l 30 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKKAEL 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555443
No 34
>PF09059 TyeA: TyeA; InterPro: IPR015144 This domain is composed of two pairs of parallel alpha-helices, and interacts with the bacterial protein YopN via hydrophobic residues located on the helices. Association of TyeA with the C terminus of YopN is accompanied by conformational changes in both polypeptides that create order out of disorder: the resulting structure then serves as an impediment to type III secretion of YopN []. ; PDB: 1XL3_D.
Probab=27.28 E-value=2.1e+02 Score=23.21 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=36.4
Q ss_pred HhhhcccCCcccccHHHHHHHHHHHH--------HHHHHHHHHHhhhhhhhcCChhhhHHHHHHHhhHHHHHHH-HHHHH
Q 016376 55 FNALSAVADDELLSIAWIQKLLYAFV--------CCQEEFRAILLKDKALVLKPPLDRFVAEFFERSLKALDTF-NATRD 125 (390)
Q Consensus 55 l~~L~~~~~~~~LSl~wl~~~l~~l~--------~~h~~~~~Li~~~~~~v~~~~~~kwvdeYlD~S~klLDvC-nal~~ 125 (390)
+.+++.-.+.++++-.|+......+- .+..++..++.....++..+...+ .++||+| +|+-.
T Consensus 9 M~dvvaL~eq~Wi~~~~i~~l~~~~~~~d~e~qI~Flrel~~l~r~~Pv~vF~D~EqR---------~~vL~a~Q~alD~ 79 (87)
T PF09059_consen 9 MEDVVALVEQRWIGPSQIERLAEALGLPDIEQQILFLRELKELFRLMPVDVFNDEEQR---------QNVLDAVQEALDQ 79 (87)
T ss_dssp HHHHHHHHHSTT--HHHHHHHHHCT--SSHHHHHHHHHHHHHHHHTS-GGGSS-HHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHCcHHhcCCHHHH---------HHHHHHHHHHHHH
Confidence 44444433456888888887765443 455666777777666666544444 4788888 44444
Q ss_pred HHH
Q 016376 126 GIE 128 (390)
Q Consensus 126 ~i~ 128 (390)
+|.
T Consensus 80 aI~ 82 (87)
T PF09059_consen 80 AIE 82 (87)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 35
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.33 E-value=4.3e+02 Score=28.93 Aligned_cols=28 Identities=36% Similarity=0.576 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLERQLR 368 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~qV~ 368 (390)
.++..++++++-++.|+.-|+.+.+.++
T Consensus 440 ~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 440 ELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444433
No 36
>PF12153 CAP18_C: LPS binding domain of CAP18 (C terminal); InterPro: IPR022746 This entry represents the cathlecidin antimicrobial C-terminal peptides. The C terminus is cleaved from the cathlecidin precursor, and is approximately 30 amino acids in length with a helical structure. This entry is found in association with PF00666 from PFAM. The C terminus peptides possess antimicrobial activity by virtue of their binding to bacterial lipopolysaccharides [][].; GO: 0042742 defense response to bacterium; PDB: 1LYP_A 2LMF_A 2FBU_H 2FBS_N 2K6O_A 2FCG_F.
Probab=26.29 E-value=1.3e+02 Score=19.22 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhhhHHHHHHhHHHH
Q 016376 349 LTLVCEVLKNELDPLERQLREVFR 372 (390)
Q Consensus 349 L~~~~~~L~~GLe~L~~qV~~lF~ 372 (390)
|.+.-+.+.++++.+...+.++|.
T Consensus 4 lrk~~eKigeklkkIGQkIKDff~ 27 (28)
T PF12153_consen 4 LRKGGEKIGEKLKKIGQKIKDFFG 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556668888888888889986
No 37
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=26.22 E-value=4.9e+02 Score=28.46 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH--HHHHHHHHHHhhhcC
Q 016376 309 LLYEIYLIDKCARQLTDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKNELDPLERQLREVF--RSIMNMRTEGLEFLG 386 (390)
Q Consensus 309 ~l~El~~v~~av~~L~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF--~~Iv~~R~~LLd~l~ 386 (390)
.++||..|...++.+...++ .+....+++...+..-.....++-.++..+. +..++.|..+|+.+.
T Consensus 36 ~L~~f~~v~~~l~~~~~~v~------------~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~ 103 (618)
T PF06419_consen 36 FLKEFSPVNRQLKRLQSDVD------------KLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFL 103 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999998888888766543 3556666666666666777777777777774 456778888887653
No 38
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.04 E-value=4.6e+02 Score=23.18 Aligned_cols=52 Identities=27% Similarity=0.249 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-CCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 016376 310 LYEIYLIDKCARQLTDLLDVAQ-FPLPEEQKIELEHGIQELTLVCEVLKNELDPLER 365 (390)
Q Consensus 310 l~El~~v~~av~~L~~~id~~~-~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~ 365 (390)
-.|+..++..+..|...+.... -|.+ +++...+++|+.-+..++.-|+.|..
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~----~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTN----EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666654432 2222 23555666666666666666665543
No 39
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=25.73 E-value=2.1e+02 Score=22.40 Aligned_cols=29 Identities=21% Similarity=0.119 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 016376 336 EEQKIELEHGIQELTLVCEVLKNELDPLE 364 (390)
Q Consensus 336 ~e~~~~v~~~veeL~~~~~~L~~GLe~L~ 364 (390)
.|+-+..+..+..+...++.|+..|..|+
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555556555555555555444
No 40
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=25.52 E-value=3e+02 Score=21.78 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhHH
Q 016376 309 LLYEIYLIDKCARQLTDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKNELDPL 363 (390)
Q Consensus 309 ~l~El~~v~~av~~L~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L 363 (390)
+|++|+.++.++-.|.--+|.. |.+.+-.+..++.+..++...+..++--.||
T Consensus 4 LL~~I~~~~Fa~~dl~LyLDTH--P~d~~Al~~y~~~~~~~~~l~~~Ye~~yGPL 56 (78)
T PF12652_consen 4 LLREIQEVSFAVVDLNLYLDTH--PDDQEALEYYNEYSKQRKQLKKEYEKRYGPL 56 (78)
T ss_pred HHHHHHHHhhHHHHHHHHhcCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7899999999999999888863 4444434445566666666666666555444
No 41
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=25.32 E-value=3.4e+02 Score=21.87 Aligned_cols=57 Identities=25% Similarity=0.225 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcc-----CCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 016376 309 LLYEIYLIDKCARQLTDLLDVAQ-----FPLPEEQKIELEHGIQELTLVCEVLKNELDPLER 365 (390)
Q Consensus 309 ~l~El~~v~~av~~L~~~id~~~-----~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~ 365 (390)
...|++.++..+...+..++.+. ....+|+-..+.+-..+|+..+...++-|..|.+
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 45566666666655555554432 1233444445666666676666666666654444
No 42
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=25.21 E-value=3.1e+02 Score=26.79 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHH
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNM 377 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~ 377 (390)
.+.+.|..++..-..|...+-.|-++|.++-++|...
T Consensus 231 rLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~h 267 (279)
T KOG0837|consen 231 RLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEH 267 (279)
T ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888888888888764
No 43
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.08 E-value=2.8e+02 Score=25.16 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhHHH
Q 016376 342 LEHGIQELTLVCEVLKNELDPLERQLREVF 371 (390)
Q Consensus 342 v~~~veeL~~~~~~L~~GLe~L~~qV~~lF 371 (390)
..+.+++|++.++.-+.-++.|.+|..++-
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666553
No 44
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.63 E-value=2.4e+02 Score=29.14 Aligned_cols=34 Identities=29% Similarity=0.176 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH----HHhHHHHHH
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLER----QLREVFRSI 374 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~----qV~~lF~~I 374 (390)
++.+.+|--..-+..|++.|...++ |..+-+|+|
T Consensus 266 qlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi 303 (395)
T PF10267_consen 266 QLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDI 303 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Confidence 3444444444455555666644444 444444444
No 45
>smart00340 HALZ homeobox associated leucin zipper.
Probab=24.58 E-value=1.2e+02 Score=21.29 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHH
Q 016376 345 GIQELTLVCEVLKNELDPLERQLREVF 371 (390)
Q Consensus 345 ~veeL~~~~~~L~~GLe~L~~qV~~lF 371 (390)
-.+-|++||+.|.+.--.|.++|.++-
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888777763
No 46
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=24.27 E-value=4.7e+02 Score=22.67 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHH---HHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhh----ccCC-------CChhh-HHHHHHHHHH
Q 016376 284 GVPLLSLHERIT---EESKKRERRNSNGLLYEIYLIDKCARQLTDLLDV----AQFP-------LPEEQ-KIELEHGIQE 348 (390)
Q Consensus 284 ~~~l~~Lq~rv~---~E~~~~~~~g~~~~l~El~~v~~av~~L~~~id~----~~~~-------~~~e~-~~~v~~~vee 348 (390)
.+-|++++.|+. .|++.. -.++++++.|..++.- +|. +.|- ..-++ .+.+.+.-+.
T Consensus 22 iN~Fsrl~~R~~~lk~dik~~--------k~~~enledA~~EieL-~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~ 92 (131)
T KOG1760|consen 22 INEFSRLNSRKDDLKADIKEA--------KTEIENLEDASNEIEL-LDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKET 92 (131)
T ss_pred HHHHHHHHhhHHHHHHHHHHH--------HHHHHHHHHHHhhHhh-cCccccccceehhhhheeccHHHHHHHHHHHHHH
Confidence 566788877764 344432 3678888887777653 322 1111 11122 2245566667
Q ss_pred HHHHHHHHhhhhhHHHHHHhHHH
Q 016376 349 LTLVCEVLKNELDPLERQLREVF 371 (390)
Q Consensus 349 L~~~~~~L~~GLe~L~~qV~~lF 371 (390)
+.+.++.|+..++.++.+++++=
T Consensus 93 l~k~i~~les~~e~I~~~m~~LK 115 (131)
T KOG1760|consen 93 LEKEIEELESELESISARMDELK 115 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888887777763
No 47
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=24.00 E-value=4.5e+02 Score=26.02 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRTEG 381 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~L 381 (390)
+.|.-++.|+..++.++..|-+=.+.|-..|-+|--.=++|
T Consensus 121 EARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KL 161 (305)
T PF15290_consen 121 EARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKL 161 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHH
Confidence 56778889999999999999999999999998885444333
No 48
>PLN02372 violaxanthin de-epoxidase
Probab=24.00 E-value=6.3e+02 Score=26.44 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=27.8
Q ss_pred HHHH--HhhhhhHHHHHHhHHHHHHHHHHHHHhhhc
Q 016376 352 VCEV--LKNELDPLERQLREVFRSIMNMRTEGLEFL 385 (390)
Q Consensus 352 ~~~~--L~~GLe~L~~qV~~lF~~Iv~~R~~LLd~l 385 (390)
.++. |++|+..|+...-.+.+.+-+--+++|+-+
T Consensus 402 ~~~~~~~~~~~~~l~~~~~~f~~~lskee~~~l~~~ 437 (455)
T PLN02372 402 LFKRVALEEGLKELEQDEENFLKELSKEEKELLEKL 437 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5555 889999999998899998888888888755
No 49
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=23.89 E-value=1.9e+02 Score=26.44 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHH
Q 016376 341 ELEHGIQELTLVCEVLKNELDPL 363 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L 363 (390)
.++....-|+.+..-|+..||.+
T Consensus 141 ~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 141 EIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555543
No 50
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.83 E-value=5.7e+02 Score=23.43 Aligned_cols=6 Identities=33% Similarity=1.414 Sum_probs=3.4
Q ss_pred CcchHH
Q 016376 281 FSWGVP 286 (390)
Q Consensus 281 ~~W~~~ 286 (390)
+-|+-+
T Consensus 55 ~YWsFp 60 (188)
T PF03962_consen 55 YYWSFP 60 (188)
T ss_pred EEEecC
Confidence 456655
No 51
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.59 E-value=3.5e+02 Score=28.40 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHH---HHHHHhhhcC
Q 016376 337 EQKIELEHGIQELTLVCEVLKNELDPLERQLREVFRSIMN---MRTEGLEFLG 386 (390)
Q Consensus 337 e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~---~R~~LLd~l~ 386 (390)
+...+++..+-.|+..|++|.++....+.+++.+-.+++. -|+.+-|+|+
T Consensus 311 eentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lr 363 (502)
T KOG0982|consen 311 EENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILR 363 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688888888888888888887777777777666653 3444444443
No 52
>smart00338 BRLZ basic region leucin zipper.
Probab=23.16 E-value=2.9e+02 Score=20.36 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHH
Q 016376 345 GIQELTLVCEVLKNELDPLERQLREVFRSIMNMRT 379 (390)
Q Consensus 345 ~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~ 379 (390)
.+++|+..+..|+.--+.|..+|+.+-.++..-+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555555444444433
No 53
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=23.07 E-value=4.4e+02 Score=21.90 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHh---HHHHHHHHHHHHHhhh
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLERQLR---EVFRSIMNMRTEGLEF 384 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~qV~---~lF~~Iv~~R~~LLd~ 384 (390)
.+...+++|...++.|.+|-|.+..-+. .+|+-|=-....++..
T Consensus 25 ~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~r~Is~AS~~l~~~ 71 (103)
T PF08654_consen 25 DLASQLEALSEKLETMADGAEAVASVLANWQNVFRAISMASLSLAKY 71 (103)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHHHHHHhhhhhc
Confidence 3566888999999999999988776664 5777776666655543
No 54
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=22.76 E-value=3e+02 Score=30.00 Aligned_cols=70 Identities=24% Similarity=0.338 Sum_probs=40.3
Q ss_pred cchhhhhhhhHHHHHHHHHhhCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCCCcchHH
Q 016376 207 LSWSVSRSWSAAKQLQSIANSLAPPRGNDIAATNGLVVSVFAMSSVLLFVLWTLVAAIPCQDRGLNVHFSIPRQFSWGVP 286 (390)
Q Consensus 207 ls~~~~~~w~a~~~L~~m~~~l~~pk~~~~~~~~~l~~~ly~~~~vt~~v~~vL~aai~~~~~~~~~~l~vp~~~~W~~~ 286 (390)
|.=-|-|...|+-.|+.+..++..|.+.-..+ . +.|--.+-+ .||-|-... .||++ ...+
T Consensus 578 LTAKVFRTYNASiTlqeqL~~lt~p~~~v~~K--I---l~YnrANr~--------VAIlCNHQR-----~v~K~--h~~s 637 (759)
T KOG0981|consen 578 LTAKVFRTYNASITLQEQLDKLTNPDGNVAAK--I---LSYNRANRT--------VAILCNHQR-----AVSKT--HEKS 637 (759)
T ss_pred chhhhhhhcchhhHHHHHHHhccCCCccHHHH--H---HHHhhccce--------eeeeecccc-----cCCcc--HHHH
Confidence 33345677788888888888887665543222 1 123222222 244454311 24555 4788
Q ss_pred HHHHHHHHHH
Q 016376 287 LLSLHERITE 296 (390)
Q Consensus 287 l~~Lq~rv~~ 296 (390)
|.+|++||.+
T Consensus 638 mekl~~kI~~ 647 (759)
T KOG0981|consen 638 MEKLAEKIKA 647 (759)
T ss_pred HHHHHHHHHH
Confidence 8999999855
No 55
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=22.73 E-value=3.2e+02 Score=20.13 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=8.2
Q ss_pred HHHHHHHHhhhhhHHHHHHhHH
Q 016376 349 LTLVCEVLKNELDPLERQLREV 370 (390)
Q Consensus 349 L~~~~~~L~~GLe~L~~qV~~l 370 (390)
+-.+++.+...+|.|++.+.++
T Consensus 26 I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 26 ILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 3333344444444444444443
No 56
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=22.08 E-value=2e+02 Score=20.60 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHH
Q 016376 342 LEHGIQELTLVCEVLKNELDPLERQ 366 (390)
Q Consensus 342 v~~~veeL~~~~~~L~~GLe~L~~q 366 (390)
+...++.|...++.+...|+.|+.+
T Consensus 21 v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 21 VTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345555555556666666655554
No 57
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=22.06 E-value=6.3e+02 Score=25.23 Aligned_cols=14 Identities=7% Similarity=-0.043 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 016376 155 QSRRARKALMDLAL 168 (390)
Q Consensus 155 ~~rRa~~aL~~l~~ 168 (390)
++-||-.+-.+...
T Consensus 12 ~F~kAs~sg~eVs~ 25 (312)
T PF04782_consen 12 YFLKASESGKEVSR 25 (312)
T ss_pred HHHHHHHhHHHHHH
Confidence 35555444444443
No 58
>PHA03386 P10 fibrous body protein; Provisional
Probab=21.77 E-value=4.3e+02 Score=21.73 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHH---HHHHhhhhhHHHHHHhHH
Q 016376 340 IELEHGIQELTLV---CEVLKNELDPLERQLREV 370 (390)
Q Consensus 340 ~~v~~~veeL~~~---~~~L~~GLe~L~~qV~~l 370 (390)
..++..|+.++.. ++.+..-|+.|..+|+++
T Consensus 22 daLQ~qV~dv~~n~~~LDa~~~qL~~l~tkV~~I 55 (94)
T PHA03386 22 DALQTQLNGLEEDSQPLDGLPAQLTELDTKVSDI 55 (94)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence 3455566666543 333334444444444443
No 59
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=21.13 E-value=4.3e+02 Score=26.36 Aligned_cols=23 Identities=13% Similarity=-0.050 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC
Q 016376 246 VFAMSSVLLFVLWTLVAAIPCQD 268 (390)
Q Consensus 246 ly~~~~vt~~v~~vL~aai~~~~ 268 (390)
|-.+.+|..-+++.+++.+-|||
T Consensus 4 Ln~~tSv~~rl~~galgLvGGp~ 26 (301)
T PF06120_consen 4 LNSATSVGSRLLSGALGLVGGPP 26 (301)
T ss_pred HHHHHHHHHHHHHhHHHhhcchH
Confidence 33445555555666666666666
No 60
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=20.93 E-value=9.6e+02 Score=25.00 Aligned_cols=30 Identities=27% Similarity=0.211 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHH
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLERQLREV 370 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~qV~~l 370 (390)
+++..+++|+...+.-...=...+.|+..+
T Consensus 147 el~~~veel~~~l~~~~~~~~~~~eq~alm 176 (410)
T TIGR03779 147 ELLREVEELESRLATEPSPAPELEEQLALM 176 (410)
T ss_pred HHHHHHHHHHHHHhhhcccccchhHHHHHH
Confidence 488888888876665443323344444433
No 61
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=20.62 E-value=7.8e+02 Score=23.83 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Q 016376 310 LYEIYLIDKCARQLTDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRTEG 381 (390)
Q Consensus 310 l~El~~v~~av~~L~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~L 381 (390)
.+-..+|.+.=+.|.. +.+++-.+...+..++..+..|..+||-+..|-+++++-+..--+.+
T Consensus 95 ~~q~~qvNaWDr~LI~---------ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~ 157 (254)
T KOG2196|consen 95 LQQATQVNAWDRTLIE---------NGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKL 157 (254)
T ss_pred HHHHHHHhHHHHHHHh---------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666543 24667788889999999999999999999999999998877655444
No 62
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=20.39 E-value=4.6e+02 Score=21.04 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhH
Q 016376 340 IELEHGIQELTLVCEVLKNELDPLERQLRE 369 (390)
Q Consensus 340 ~~v~~~veeL~~~~~~L~~GLe~L~~qV~~ 369 (390)
.++...-.+|+..|+.++.-|++|++-|+-
T Consensus 35 ~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 35 EELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777776654
No 63
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=20.26 E-value=5.4e+02 Score=25.19 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLERQLR 368 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~qV~ 368 (390)
-+++.+++-++.++.|+.|++.+..-|.
T Consensus 282 iLQq~Lketr~~Iq~l~k~~~q~sqav~ 309 (330)
T KOG2991|consen 282 ILQQKLKETRKEIQRLKKGLEQVSQAVG 309 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677788888888888888886665554
No 64
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=20.15 E-value=69 Score=25.32 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=21.3
Q ss_pred hcCChhhhHHHHHHHhhHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Q 016376 97 VLKPPLDRFVAEFFERSLKA---------------LDTFNATRDGIEKIRLWQKHLE 138 (390)
Q Consensus 97 v~~~~~~kwvdeYlD~S~kl---------------LDvCnal~~~i~~~~~~~~~l~ 138 (390)
+.++.-++.+++|.|.+-.. +++=+...+.|+|+++-|+.++
T Consensus 13 v~k~ea~~fL~~FI~~~E~~~~~~~~~~~~~~~t~~s~~t~~ss~LSQLKRiQRdlr 69 (76)
T PF08203_consen 13 VSKDEAEQFLTEFIDEKESIASNLTNSEDNSAGTGLSSDTGLSSVLSQLKRIQRDLR 69 (76)
T ss_dssp --HHHHHHHHHHHHHHHHSS-------------------TTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhccccccccccccccccCCCccHHHHHHHHHHHHhhC
Confidence 33344567777777777665 3333445555555555555443
No 65
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=20.15 E-value=5.5e+02 Score=21.88 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRTEG 381 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~L 381 (390)
.++..++.++..++.|....+.|..+|-+=|..+......|
T Consensus 69 ~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L 109 (132)
T PF10392_consen 69 ELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQL 109 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45567777777788888888888888888888877766654
No 66
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.10 E-value=6.5e+02 Score=24.63 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 016376 310 LYEIYLIDKCARQLTDLLDV 329 (390)
Q Consensus 310 l~El~~v~~av~~L~~~id~ 329 (390)
=+|++.++.-+..+...+++
T Consensus 51 q~ei~~L~~qi~~~~~k~~~ 70 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDE 70 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666555533
Done!