Query 016376
Match_columns 390
No_of_seqs 157 out of 271
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:33:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kd8_B GABH BLL, GCN4 acid bas 46.0 43 0.0015 21.6 4.7 30 339-368 3-32 (36)
2 2akf_A Coronin-1A; coiled coil 44.7 34 0.0012 21.1 3.9 19 348-366 10-28 (32)
3 3na7_A HP0958; flagellar bioge 42.2 1.2E+02 0.0042 27.6 9.4 17 310-326 10-26 (256)
4 2yy0_A C-MYC-binding protein; 38.6 51 0.0017 23.1 4.7 34 335-368 17-50 (53)
5 1ud0_A HSC70, 70 kDa heat-shoc 34.7 1.6E+02 0.0055 22.9 8.9 15 339-353 34-48 (113)
6 3ljm_A Coil Ser L9C; de novo d 34.2 51 0.0017 19.9 3.4 8 348-355 19-26 (31)
7 2p32_A Heat shock 70 kDa prote 33.9 1.7E+02 0.0058 23.2 8.0 14 340-353 49-62 (120)
8 2zqm_A Prefoldin beta subunit 31.0 1.9E+02 0.0064 22.5 9.1 45 343-387 69-113 (117)
9 4i0x_A ESAT-6-like protein MAB 29.7 1.8E+02 0.0061 21.9 7.5 32 338-369 41-72 (94)
10 1m1j_B Fibrinogen beta chain; 29.2 4.5E+02 0.015 26.4 12.2 23 278-300 82-104 (464)
11 2ocy_A RAB guanine nucleotide 28.9 2.1E+02 0.0071 24.5 7.9 85 283-372 56-143 (154)
12 2pnv_A Small conductance calci 28.9 1E+02 0.0035 20.7 4.7 25 342-366 14-38 (43)
13 1kd8_A GABH AIV, GCN4 acid bas 27.5 88 0.003 20.1 3.9 27 341-367 5-31 (36)
14 1xou_B Z5138 gene product; coi 27.3 2E+02 0.0068 21.6 9.9 74 290-386 13-86 (95)
15 3lof_A Heat shock 70 kDa prote 24.6 2.5E+02 0.0085 21.8 8.5 18 336-353 36-53 (113)
16 2pnv_A Small conductance calci 24.4 1.3E+02 0.0046 20.1 4.6 26 345-370 10-35 (43)
17 1t2k_D Cyclic-AMP-dependent tr 24.3 1.9E+02 0.0064 20.3 5.9 29 342-370 27-55 (61)
18 3nmd_A CGMP dependent protein 23.6 1.9E+02 0.0067 21.5 5.9 25 345-369 41-65 (72)
19 1hjb_A Ccaat/enhancer binding 23.2 1.4E+02 0.0048 23.0 5.3 44 339-382 38-81 (87)
20 3kyj_A CHEA3, putative histidi 23.0 2.3E+02 0.0078 23.5 7.1 51 310-360 63-113 (144)
21 3zbh_A ESXA; unknown function, 22.6 2.3E+02 0.008 20.8 8.0 41 339-379 51-91 (99)
22 2xz3_A Maltose ABC transporter 22.5 2.7E+02 0.0094 27.0 8.8 40 342-381 377-416 (463)
23 4ioe_A Secreted protein ESXB; 22.4 2.3E+02 0.0079 20.7 9.3 58 316-373 28-85 (93)
24 2k6o_A Cathelicidin antimicrob 22.1 1.2E+02 0.0041 19.6 3.8 27 349-375 6-32 (37)
25 3fav_B ESAT-6, 6 kDa early sec 21.8 1.8E+02 0.0062 21.5 5.8 31 341-371 49-79 (94)
26 3pdy_A Plectin; cytoskeleton, 21.8 3.8E+02 0.013 23.0 9.3 7 317-323 18-24 (210)
27 4dnd_A Syntaxin-10, SYN10; str 21.7 3.2E+02 0.011 22.4 7.6 29 341-369 64-92 (130)
28 1go4_E MAD1 (mitotic arrest de 21.6 1.2E+02 0.0041 24.1 4.6 37 332-368 7-43 (100)
29 1pzq_A Erythronolide synthase; 21.3 1.5E+02 0.005 20.4 4.4 37 342-378 10-48 (60)
30 1lq7_A Alpha3W; three helix bu 20.8 2.2E+02 0.0076 19.9 7.5 21 339-359 27-47 (67)
31 1t3j_A Mitofusin 1; coiled coi 20.8 1.8E+02 0.0063 22.8 5.5 25 341-365 68-92 (96)
32 3mq9_A Bone marrow stromal ant 20.4 3.8E+02 0.013 26.0 9.4 40 341-380 394-433 (471)
No 1
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=46.04 E-value=43 Score=21.57 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 016376 339 KIELEHGIQELTLVCEVLKNELDPLERQLR 368 (390)
Q Consensus 339 ~~~v~~~veeL~~~~~~L~~GLe~L~~qV~ 368 (390)
+.++...|+||...-..|++.++.|..-+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 345566677776666666666665544443
No 2
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=44.71 E-value=34 Score=21.07 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhhhhHHHHH
Q 016376 348 ELTLVCEVLKNELDPLERQ 366 (390)
Q Consensus 348 eL~~~~~~L~~GLe~L~~q 366 (390)
.|...+++|.+.+|.|+..
T Consensus 10 ~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 10 NLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=42.23 E-value=1.2e+02 Score=27.55 Aligned_cols=17 Identities=41% Similarity=0.415 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016376 310 LYEIYLIDKCARQLTDL 326 (390)
Q Consensus 310 l~El~~v~~av~~L~~~ 326 (390)
|.+++.+|.-+..|...
T Consensus 10 L~~LQ~lD~~i~~l~~~ 26 (256)
T 3na7_A 10 LIEISHLDKEIDSLEPL 26 (256)
T ss_dssp HHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 4
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.59 E-value=51 Score=23.06 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=25.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 016376 335 PEEQKIELEHGIQELTLVCEVLKNELDPLERQLR 368 (390)
Q Consensus 335 ~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~ 368 (390)
+..+.+.++.-.++|+..++.|.+.++.+..++.
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777888888888888888888887666553
No 5
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=34.74 E-value=1.6e+02 Score=22.89 Aligned_cols=15 Identities=13% Similarity=0.025 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 016376 339 KIELEHGIQELTLVC 353 (390)
Q Consensus 339 ~~~v~~~veeL~~~~ 353 (390)
...+...+++++.++
T Consensus 34 k~~i~~~i~~l~~~L 48 (113)
T 1ud0_A 34 KQKILDKCNEIISWL 48 (113)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 6
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=34.19 E-value=51 Score=19.90 Aligned_cols=8 Identities=25% Similarity=0.098 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 016376 348 ELTLVCEV 355 (390)
Q Consensus 348 eL~~~~~~ 355 (390)
.|++.++.
T Consensus 19 alekklea 26 (31)
T 3ljm_A 19 ALEKKLEA 26 (31)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 7
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=33.85 E-value=1.7e+02 Score=23.23 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 016376 340 IELEHGIQELTLVC 353 (390)
Q Consensus 340 ~~v~~~veeL~~~~ 353 (390)
+.+...+++|+.++
T Consensus 49 ~~I~~~i~el~~~L 62 (120)
T 2p32_A 49 KKIEDKCDEILKWL 62 (120)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 8
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.96 E-value=1.9e+02 Score=22.53 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHhhhcCC
Q 016376 343 EHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRTEGLEFLGS 387 (390)
Q Consensus 343 ~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~LLd~l~~ 387 (390)
.++.+.|+...+.++.-++.|+++...+=..+-..+..|=..+..
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345555555555556666666666666666666666665555544
No 9
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=29.73 E-value=1.8e+02 Score=21.89 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhH
Q 016376 338 QKIELEHGIQELTLVCEVLKNELDPLERQLRE 369 (390)
Q Consensus 338 ~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~ 369 (390)
-....+...++.......|.+.|+.|...++.
T Consensus 41 Aa~af~~~~~~w~~~a~~l~~~L~~i~~~l~~ 72 (94)
T 4i0x_A 41 AADAYRSGWDEMQDGATKVWNALTDIASTLGS 72 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467778888888888888888888777765
No 10
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.23 E-value=4.5e+02 Score=26.37 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=16.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHH
Q 016376 278 PRQFSWGVPLLSLHERITEESKK 300 (390)
Q Consensus 278 p~~~~W~~~l~~Lq~rv~~E~~~ 300 (390)
|.++.|..-|.+-++.|...+..
T Consensus 82 PTtC~l~D~L~k~q~~V~~~Lqe 104 (464)
T 1m1j_B 82 PTGCELQTTLLKQEKTVKPVLRD 104 (464)
T ss_dssp ECTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHhhhhhHhHHHH
Confidence 66788888888888877655444
No 11
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.91 E-value=2.1e+02 Score=24.46 Aligned_cols=85 Identities=25% Similarity=0.186 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh-hhccCCCChh--hHHHHHHHHHHHHHHHHHHhhh
Q 016376 283 WGVPLLSLHERITEESKKRERRNSNGLLYEIYLIDKCARQLTDLL-DVAQFPLPEE--QKIELEHGIQELTLVCEVLKNE 359 (390)
Q Consensus 283 W~~~l~~Lq~rv~~E~~~~~~~g~~~~l~El~~v~~av~~L~~~i-d~~~~~~~~e--~~~~v~~~veeL~~~~~~L~~G 359 (390)
|..-+.+|+.++.+|...+. ..-.+..+++.-++.|...+ +.+.-=+..+ .-..+..+++.|+..+..-+.-
T Consensus 56 ~~~e~~~L~~~l~~E~~~R~-----~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~ 130 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENELRT-----KAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTL 130 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556788888888766643 13456666666666666554 1110000011 1224667788888888888888
Q ss_pred hhHHHHHHhHHHH
Q 016376 360 LDPLERQLREVFR 372 (390)
Q Consensus 360 Le~L~~qV~~lF~ 372 (390)
|+.++.|+.++=+
T Consensus 131 l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 131 LDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887744
No 12
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=28.90 E-value=1e+02 Score=20.68 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHH
Q 016376 342 LEHGIQELTLVCEVLKNELDPLERQ 366 (390)
Q Consensus 342 v~~~veeL~~~~~~L~~GLe~L~~q 366 (390)
+..+=++|++.+..|+.-||.|.++
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555544444
No 13
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=27.53 E-value=88 Score=20.11 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLERQL 367 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~qV 367 (390)
++...|++|-..-..|++.+..|..-+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 444555666555555555555444433
No 14
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=27.30 E-value=2e+02 Score=21.64 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhH
Q 016376 290 LHERITEESKKRERRNSNGLLYEIYLIDKCARQLTDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKNELDPLERQLRE 369 (390)
Q Consensus 290 Lq~rv~~E~~~~~~~g~~~~l~El~~v~~av~~L~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~ 369 (390)
|.++|..|+....+ .+.||+-|...|..|.+... .--++++.|-+.++....|=| +.
T Consensus 13 ldkkirseie~ikk-----iiaefdvvke~v~~l~ekak------------t~pqaae~ln~liegyt~gee------rk 69 (95)
T 1xou_B 13 LDKKIRSEIEAIKK-----IIAEFDVVKESVNELSEKAK------------TDPQAAEKLNKLIEGYTYGEE------RK 69 (95)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH------------HCHHHHHHHHHHHHHHHHSHH------HH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhc------------CCHHHHHHHHHHHHhhcchhH------HH
Confidence 46677777665432 57899988888888765431 112467788888888888888 58
Q ss_pred HHHHHHHHHHHHhhhcC
Q 016376 370 VFRSIMNMRTEGLEFLG 386 (390)
Q Consensus 370 lF~~Iv~~R~~LLd~l~ 386 (390)
+|+..+.-=..|...++
T Consensus 70 lydsalskieklietm~ 86 (95)
T 1xou_B 70 LYDSALSKIEKLIETLS 86 (95)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 88887776666666554
No 15
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=24.60 E-value=2.5e+02 Score=21.84 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=8.8
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 016376 336 EEQKIELEHGIQELTLVC 353 (390)
Q Consensus 336 ~e~~~~v~~~veeL~~~~ 353 (390)
.++...+...+++++.++
T Consensus 36 ~eek~~i~~~i~e~~~wL 53 (113)
T 3lof_A 36 EADKKKVLDKCQEVISWL 53 (113)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555544
No 16
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=24.43 E-value=1.3e+02 Score=20.07 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHH
Q 016376 345 GIQELTLVCEVLKNELDPLERQLREV 370 (390)
Q Consensus 345 ~veeL~~~~~~L~~GLe~L~~qV~~l 370 (390)
-+-+|..+-+.|++.++.|+.+++.+
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L 35 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 17
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.26 E-value=1.9e+02 Score=20.30 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhHH
Q 016376 342 LEHGIQELTLVCEVLKNELDPLERQLREV 370 (390)
Q Consensus 342 v~~~veeL~~~~~~L~~GLe~L~~qV~~l 370 (390)
+...++.|...-..|..-+..|..++..|
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.63 E-value=1.9e+02 Score=21.49 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhH
Q 016376 345 GIQELTLVCEVLKNELDPLERQLRE 369 (390)
Q Consensus 345 ~veeL~~~~~~L~~GLe~L~~qV~~ 369 (390)
.+++|++.++..++-+..|..++|.
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 19
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.18 E-value=1.4e+02 Score=22.98 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHh
Q 016376 339 KIELEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRTEGL 382 (390)
Q Consensus 339 ~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~LL 382 (390)
..++...+++|+.--..|+.-++.|..++..|=..++..+..++
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence 34566677777777777777777777777766665555554443
No 20
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=22.97 E-value=2.3e+02 Score=23.48 Aligned_cols=51 Identities=18% Similarity=0.060 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhhh
Q 016376 310 LYEIYLIDKCARQLTDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKNEL 360 (390)
Q Consensus 310 l~El~~v~~av~~L~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~GL 360 (390)
+..+..+--.++.+...+.....+.+.+-...+-.+++.|+..++.++.|=
T Consensus 63 ~~~i~~laH~lE~ll~~lr~g~~~~~~~l~dlll~~~D~l~~lv~~~~~~~ 113 (144)
T 3kyj_A 63 LSVVESRAHLCEDLIGLVRDAGVPMDGEIVEILLFASDTLRAMLEETAASR 113 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445555455555554444333445566666678888888888888888754
No 21
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=22.63 E-value=2.3e+02 Score=20.80 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHH
Q 016376 339 KIELEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRT 379 (390)
Q Consensus 339 ~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~ 379 (390)
........+++...+..+.+.|+.+...++.--+..-.+=.
T Consensus 51 ~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~ 91 (99)
T 3zbh_A 51 SEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQ 91 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778888888888888888888887776655544433
No 22
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=22.49 E-value=2.7e+02 Score=27.04 Aligned_cols=40 Identities=18% Similarity=0.063 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Q 016376 342 LEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRTEG 381 (390)
Q Consensus 342 v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~L 381 (390)
.+.-+++++..++.+++-++.|++|++.+-.-+...|-.|
T Consensus 377 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 416 (463)
T 2xz3_A 377 LTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGL 416 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 4556788888888889999999999999988888888754
No 23
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=22.36 E-value=2.3e+02 Score=20.68 Aligned_cols=58 Identities=5% Similarity=0.038 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHH
Q 016376 316 IDKCARQLTDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKNELDPLERQLREVFRS 373 (390)
Q Consensus 316 v~~av~~L~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~ 373 (390)
++..+..|...++.....=.......+....+++...+..+.+.|+.+...++..=+.
T Consensus 28 i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A~~ 85 (93)
T 4ioe_A 28 AQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIADK 85 (93)
T ss_dssp HHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433222233445677888888888888888888888777765443
No 24
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=22.13 E-value=1.2e+02 Score=19.65 Aligned_cols=27 Identities=11% Similarity=0.368 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhhhHHHHHHhHHHHHHH
Q 016376 349 LTLVCEVLKNELDPLERQLREVFRSIM 375 (390)
Q Consensus 349 L~~~~~~L~~GLe~L~~qV~~lF~~Iv 375 (390)
+.+.=+++.+|+..+...+.++|..++
T Consensus 6 lrk~geKig~~~kkIgQkIKdFf~~l~ 32 (37)
T 2k6o_A 6 FRKSKEKIGKEFKRIVQRIKDFLRNLV 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445556778889999999999998753
No 25
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=21.82 E-value=1.8e+02 Score=21.47 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLERQLREVF 371 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF 371 (390)
..+....+.......|.+.|+.+...|+.--
T Consensus 49 af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~ 79 (94)
T 3fav_B 49 AYQGVQQKWDATATELNNALQNLARTISEAG 79 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888888877777643
No 26
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=21.80 E-value=3.8e+02 Score=23.01 Aligned_cols=7 Identities=0% Similarity=-0.292 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 016376 317 DKCARQL 323 (390)
Q Consensus 317 ~~av~~L 323 (390)
...+.+.
T Consensus 18 ~~Wl~e~ 24 (210)
T 3pdy_A 18 LAWVEEN 24 (210)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 27
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=21.70 E-value=3.2e+02 Score=22.38 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhH
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLERQLRE 369 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~qV~~ 369 (390)
++...-.||+..|+.++.-|++|++-|.=
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666653
No 28
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.58 E-value=1.2e+02 Score=24.09 Aligned_cols=37 Identities=30% Similarity=0.280 Sum_probs=25.7
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 016376 332 FPLPEEQKIELEHGIQELTLVCEVLKNELDPLERQLR 368 (390)
Q Consensus 332 ~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~ 368 (390)
+|.+.+....++..+++|+.-.+.|++-.+.|+.++.
T Consensus 7 ~~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 7 FLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667778888888888888887777777664
No 29
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=21.35 E-value=1.5e+02 Score=20.43 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHH--hhhhhHHHHHHhHHHHHHHHHH
Q 016376 342 LEHGIQELTLVCEVL--KNELDPLERQLREVFRSIMNMR 378 (390)
Q Consensus 342 v~~~veeL~~~~~~L--~~GLe~L~~qV~~lF~~Iv~~R 378 (390)
+.++++||++.++.| ++|-|++...+..+.++--.-|
T Consensus 10 igdrldelekalealsaedghddvgqrlesllrrwnsrr 48 (60)
T 1pzq_A 10 IGDRLDELEKALEALSAEDGHDDVGQRLESLLRRWNSRR 48 (60)
T ss_dssp THHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcc
Confidence 345778888888877 4678888777777777765544
No 30
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=20.77 E-value=2.2e+02 Score=19.89 Aligned_cols=21 Identities=29% Similarity=0.167 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 016376 339 KIELEHGIQELTLVCEVLKNE 359 (390)
Q Consensus 339 ~~~v~~~veeL~~~~~~L~~G 359 (390)
+++++..-++|++.++.|..|
T Consensus 27 ieelkkkweelkkkieelggg 47 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEELGGG 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 445666666666666666555
No 31
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.76 E-value=1.8e+02 Score=22.84 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLER 365 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~ 365 (390)
.+.....-|+.+..-|+.+||.+..
T Consensus 68 ~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 68 KMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777775443
No 32
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.41 E-value=3.8e+02 Score=26.01 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHH
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLERQLREVFRSIMNMRTE 380 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF~~Iv~~R~~ 380 (390)
+.++....|++.+...++++-.+++|..-|-|.+|.--..
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMAS 433 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHH
Confidence 4667777888888888888888888888888877765433
Done!