Query 016376
Match_columns 390
No_of_seqs 157 out of 271
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 12:33:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016376.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016376hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u5pa2 a.7.1.1 (A:1772-1872) 30.2 78 0.0057 21.7 8.8 6 317-322 11-16 (101)
2 d1s35a2 a.7.1.1 (A:1169-1273) 27.8 91 0.0066 21.6 8.9 11 312-322 8-18 (105)
3 d1i5na_ a.24.10.3 (A:) Chemota 27.6 87 0.0064 23.0 7.2 60 310-369 56-115 (128)
4 d1ez3a_ a.47.2.1 (A:) Syntaxin 27.3 1.1E+02 0.008 22.4 8.5 31 339-369 47-77 (124)
5 d1seta1 a.2.7.1 (A:1-110) Sery 25.5 1.1E+02 0.0082 22.0 10.2 36 336-371 63-98 (110)
6 d1u00a1 a.8.4.1 (A:504-615) Ch 23.9 93 0.0067 22.7 6.6 39 311-356 54-92 (112)
7 d1lvfa_ a.47.2.1 (A:) Syntaxin 23.7 1.2E+02 0.0091 21.8 7.4 30 341-370 39-68 (106)
8 d1wa8b1 a.25.3.1 (B:602-695) E 20.8 59 0.0043 22.8 4.6 11 313-323 7-17 (94)
9 d2j7za1 d.9.1.1 (A:1-67) Strom 20.4 15 0.0011 24.9 0.9 19 96-114 48-66 (67)
10 d1wa8a1 a.25.3.1 (A:1-99) ESAT 19.1 67 0.0049 22.5 4.7 33 338-370 6-38 (99)
No 1
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=30.20 E-value=78 Score=21.70 Aligned_cols=6 Identities=0% Similarity=0.301 Sum_probs=2.2
Q ss_pred HHHHHH
Q 016376 317 DKCARQ 322 (390)
Q Consensus 317 ~~av~~ 322 (390)
...+..
T Consensus 11 ~~Wl~e 16 (101)
T d1u5pa2 11 ESWIKE 16 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 2
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.77 E-value=91 Score=21.65 Aligned_cols=11 Identities=0% Similarity=-0.061 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 016376 312 EIYLIDKCARQ 322 (390)
Q Consensus 312 El~~v~~av~~ 322 (390)
+++.++..+..
T Consensus 8 d~~~~~~Wi~~ 18 (105)
T d1s35a2 8 DAKQAEAILSN 18 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 3
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=27.57 E-value=87 Score=22.97 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhH
Q 016376 310 LYEIYLIDKCARQLTDLLDVAQFPLPEEQKIELEHGIQELTLVCEVLKNELDPLERQLRE 369 (390)
Q Consensus 310 l~El~~v~~av~~L~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~ 369 (390)
+..+..+--.++.+...+...+.+.+.+-...+...++.|+..++.++.|-++-...+..
T Consensus 56 l~~i~~lah~lE~~l~~lr~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~ 115 (128)
T d1i5na_ 56 FTILQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKNSEEPDAASFEY 115 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 455555555555555544333444555656677888888888888888876543333333
No 4
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=27.27 E-value=1.1e+02 Score=22.42 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhH
Q 016376 339 KIELEHGIQELTLVCEVLKNELDPLERQLRE 369 (390)
Q Consensus 339 ~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~ 369 (390)
...+...+.++......+...|+.|++++..
T Consensus 47 ~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~ 77 (124)
T d1ez3a_ 47 KEELEELMSDIKKTANKVRSKLKSIEQSIEQ 77 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777888888888888877777654
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=25.45 E-value=1.1e+02 Score=21.97 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH
Q 016376 336 EEQKIELEHGIQELTLVCEVLKNELDPLERQLREVF 371 (390)
Q Consensus 336 ~e~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~lF 371 (390)
.++.+++...+.+|+..+..++..+..++.+++++.
T Consensus 63 ~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~l 98 (110)
T d1seta1 63 PEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556778888888888888888887777776654
No 6
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=23.90 E-value=93 Score=22.71 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHH
Q 016376 311 YEIYLIDKCARQLTDLLDVAQFPLPEEQKIELEHGIQELTLVCEVL 356 (390)
Q Consensus 311 ~El~~v~~av~~L~~~id~~~~~~~~e~~~~v~~~veeL~~~~~~L 356 (390)
.|...++.++..|...+++ ++...++..+++|...+..|
T Consensus 54 ~e~~~i~~~i~~l~~~l~~-------~d~~~I~~~~~~L~~~~~~~ 92 (112)
T d1u00a1 54 AERQVIDDAAAHLSEVAQG-------DDVDAIEQAIKNVDKQTQDF 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHTTS-------SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHH
Confidence 4555556666666655532 22334555555555555544
No 7
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.70 E-value=1.2e+02 Score=21.85 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHH
Q 016376 341 ELEHGIQELTLVCEVLKNELDPLERQLREV 370 (390)
Q Consensus 341 ~v~~~veeL~~~~~~L~~GLe~L~~qV~~l 370 (390)
++...-.+|...|+.++.-|+.|++-|+=+
T Consensus 39 e~~~~~~eL~~~l~siewdL~dLe~av~~v 68 (106)
T d1lvfa_ 39 EIDWTTNELRNNLRSIEWDLEDLDETISIV 68 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456677788888888888888887777633
No 8
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.79 E-value=59 Score=22.85 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 016376 313 IYLIDKCARQL 323 (390)
Q Consensus 313 l~~v~~av~~L 323 (390)
+..++.++..+
T Consensus 7 ~~~l~~~a~~i 17 (94)
T d1wa8b1 7 FAGIEAAASAI 17 (94)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 9
>d2j7za1 d.9.1.1 (A:1-67) Stromal cell-derived factor-1 (SDF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.39 E-value=15 Score=24.94 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=14.7
Q ss_pred hhcCChhhhHHHHHHHhhH
Q 016376 96 LVLKPPLDRFVAEFFERSL 114 (390)
Q Consensus 96 ~v~~~~~~kwvdeYlD~S~ 114 (390)
++.-++.-||+.+||+.++
T Consensus 48 qvCi~Pk~kWiQqYL~kAl 66 (67)
T d2j7za1 48 QVCIDPKLKWIQEYLEKAL 66 (67)
T ss_dssp EEEBCTTCTTHHHHHHHHH
T ss_pred eEeeCchHHHHHHHHHHhc
Confidence 3455788899999998764
No 10
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=19.14 E-value=67 Score=22.53 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHH
Q 016376 338 QKIELEHGIQELTLVCEVLKNELDPLERQLREV 370 (390)
Q Consensus 338 ~~~~v~~~veeL~~~~~~L~~GLe~L~~qV~~l 370 (390)
+.+.++..+..+......|+..|..|..+|+.+
T Consensus 6 d~~~l~~~A~~~~~~~~~l~~~l~~l~~~v~~l 38 (99)
T d1wa8a1 6 DAATLAQEAGNFERISGDLKTQIDQVESTAGSL 38 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!