BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016377
(390 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14717|TRDMT_HUMAN tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens
GN=TRDMT1 PE=1 SV=1
Length = 391
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 151/399 (37%), Positives = 224/399 (56%), Gaps = 33/399 (8%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLT 69
E RVLE YSG+GGM ++L ++ + AQVV A D+N AN+VY+ NF H + I+ +T
Sbjct: 2 EPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61
Query: 70 AAELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129
E D L+SPPCQP+TR G Q +D+R SFL IL+++P K P + +ENV
Sbjct: 62 LEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENV 121
Query: 130 VGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAK--RKPLSFRCQ-- 185
GFE S T +I+ + N + QEF+LSP G+P SR RYF +AK +PL F+
Sbjct: 122 KGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQ 181
Query: 186 -LLNNQLLRSPSPLLGNDDM--TVITKHDQPDDSWDKLLESC--DPVERFLEFSNSGDQV 240
L+ + S P D+ + K+ +P+ S+D ++ D + LE + +
Sbjct: 182 VLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHRK 241
Query: 241 NTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCC 300
N + LS + DF ++ ++ +L+P + R+ +DIV P +R
Sbjct: 242 NQQDSDLS--VKMLKDF--------LEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSV 291
Query: 301 CFTKSYYRYVKGTGSLLAT---VQPKNKGKA---SSLKEQ-------HLRYFTPREVANL 347
CFTK Y Y++GTGS+L T VQ +N K+ S +EQ LRYFTP+E+ANL
Sbjct: 292 CFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANL 351
Query: 348 HSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLF 386
FP +F FP ++++QRY LLGNSL++ VVA L++ L+
Sbjct: 352 LGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILY 390
>sp|Q7YS61|TRDMT_BOVIN tRNA (cytosine-5-)-methyltransferase OS=Bos taurus GN=TRDMT1 PE=2
SV=1
Length = 391
Score = 238 bits (607), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 153/409 (37%), Positives = 215/409 (52%), Gaps = 55/409 (13%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLT 69
E R LE YSGIGGM +L ++ + AQVV A D+N AN+VY+ NF H + I+ +T
Sbjct: 2 EPLRALELYSGIGGMHQALRESCIPAQVVAAVDVNTVANEVYKYNFPHTQLLAKTIEGIT 61
Query: 70 AAELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129
E D + L+SPPCQP+TR GLQ +D R SFL IL+++P K P + +ENV
Sbjct: 62 LEEFDRLSFNMILMSPPCQPFTRIGLQGDVTDPRTNSFLHILDILPRLQKLPKYILLENV 121
Query: 130 VGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNN 189
GFE S T +I+ + N + QEF+LSP G+P SR RYF +AK +P F Q
Sbjct: 122 KGFEMSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQPEPFPFQAPGQ 181
Query: 190 QLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLST 249
L+ P T+ + P E+ E +G ++ ++ +
Sbjct: 182 VLMEFPK-----------TESEHPPKYAIN-------AEKKTEEKKTGPKICFDSSTQCS 223
Query: 250 GTAAVDDFGAAEETVEVDRCVSIDH--------------------FLVPLSLIERWGSAM 289
G A+ E E+DR D FL P SL+ R+ +
Sbjct: 224 GKEAI--LFKLETAGEIDRKHQQDSDLSVRMLKDFLEDDIDKHSFFLPPKSLL-RYALLL 280
Query: 290 DIVYPDSKRCCCFTKSYYRYVKGTGSLLAT---VQPKNKGKA-SSLKEQ---------HL 336
DIV P S+R CFTK Y RY++GTGS+L T VQ +N K+ +SL ++ L
Sbjct: 281 DIVKPTSRRSMCFTKGYGRYIEGTGSVLQTTEDVQIENIYKSLTSLSQEEKIMRLSMLQL 340
Query: 337 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYL 385
R+FTP+E+ANL FP +F FP +++QRY LLGNSL++ VVA L++ L
Sbjct: 341 RFFTPKEIANLLGFPPEFGFPEMTTVKQRYRLLGNSLNVHVVAKLIKIL 389
>sp|Q4G073|TRDMT_RAT tRNA (cytosine(38)-C(5))-methyltransferase OS=Rattus norvegicus
GN=Trdmt1 PE=2 SV=1
Length = 391
Score = 231 bits (588), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 150/408 (36%), Positives = 207/408 (50%), Gaps = 53/408 (12%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQG-NIQNLT 69
E RVLE YSGIGGM ++L ++ V A VV A D++ AN+VY+ NF H I+ ++
Sbjct: 2 EPLRVLELYSGIGGMHHALRESRVPAHVVAAIDVSTVANEVYKHNFPHTHLLAKTIEGIS 61
Query: 70 AAELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129
E D + L+SPPCQP+TR GLQ SD R SFL IL+++P K P + +ENV
Sbjct: 62 LEEFDKLSFNMILMSPPCQPFTRIGLQGDMSDRRTNSFLYILDILPRLQKLPKYILLENV 121
Query: 130 VGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAK--RKPLSFRC--Q 185
GFE S T +I+ + + QEF+LSP G+P SR RYF +AK +PL F+ Q
Sbjct: 122 KGFEVSSTRGLLIQTMEACGFQYQEFLLSPSSLGIPNSRLRYFLIAKLQSEPLCFQAPGQ 181
Query: 186 LLN---NQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFL----------- 231
+L N P ++ + + +PD D C + L
Sbjct: 182 ILMEFPNSGTVQPQEYAVVEEGKLRVRTREPDVCLDSSSTQCSGQDSILFKHETAADIDR 241
Query: 232 -EFSNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMD 290
+S V GFL G A +L+P + R+ +D
Sbjct: 242 KRQQDSDLSVQMLKGFLEDGDTA--------------------QYLLPAKSLLRYALLLD 281
Query: 291 IVYPDSKRCCCFTKSYYRYVKGTGSLLAT---VQPKN----------KGKASSLKEQHLR 337
IV P S+R CFTK Y Y++GTGS+L T VQ +N + K + L LR
Sbjct: 282 IVKPTSRRSMCFTKGYGSYIEGTGSVLQTAEDVQIENIYKSLPDLPPEEKIAKLSMLKLR 341
Query: 338 YFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYL 385
YFTP+E+ANL FP +F FP +++QRY LLGNSL++ VV+ LL L
Sbjct: 342 YFTPKEIANLLGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVSKLLTVL 389
>sp|O55055|TRDMT_MOUSE tRNA (cytosine(38)-C(5))-methyltransferase OS=Mus musculus
GN=Trdmt1 PE=2 SV=2
Length = 415
Score = 228 bits (582), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 151/411 (36%), Positives = 212/411 (51%), Gaps = 59/411 (14%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLT 69
E RVLE YSGIGGM ++L ++ + A VV A D+N AN+VY+ NF H I+ ++
Sbjct: 2 EPLRVLELYSGIGGMHHALRESHIPAHVVAAIDVNTVANEVYKHNFPHTHLLSKTIEGIS 61
Query: 70 AAELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129
+ D + L+SPPCQP+TR GLQ +D R SFL IL+++P K P + +ENV
Sbjct: 62 LEDFDKLSFNMILMSPPCQPFTRIGLQGDMTDPRTTSFLYILDILPRLQKLPKYILLENV 121
Query: 130 VGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNN 189
GFE S T +I+ + + QEF+LSP G+P SR RYF +AK + F Q
Sbjct: 122 KGFEVSSTRGLLIQTIEACGFQYQEFLLSPSSLGIPNSRLRYFLIAKLQSEPFPFQAPGQ 181
Query: 190 QLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLST 249
L+ P + + + QP V+R +G ++ E+ ST
Sbjct: 182 ILMEFPKIVTVEPQKYAVVEESQPR------------VQR------TGPRICAESS--ST 221
Query: 250 GTAAVDDFGAAEETVE-------VDRCVSI------------DHFLVPLSLIERWGSAMD 290
++ D ETVE D +S+ D +L+P L+ R+ +D
Sbjct: 222 QSSGKDTILFKLETVEERDRKHQQDSDLSVQMLKDFLEDGDTDEYLLPPKLLLRYALLLD 281
Query: 291 IVYPDSKRCCCFTKSYYRYVKGTGSLLATVQ---------------PKNK-GKASSLKEQ 334
IV P S+R CFTK Y Y++GTGS+L + P+ K K S LK
Sbjct: 282 IVKPTSRRSMCFTKGYGSYIEGTGSVLQAAEDAQIENIYKSLPDLPPEEKIAKLSMLK-- 339
Query: 335 HLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYL 385
LRYFTP+E+ANL FP +F FP +++QRY LLGNSL++ VVA LL L
Sbjct: 340 -LRYFTPKEIANLQGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVAKLLTVL 389
>sp|Q54JH6|CMT1_DICDI DNA (cytosine-5)-methyltransferase OS=Dictyostelium discoideum
GN=dnmA PE=1 SV=1
Length = 379
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 207/394 (52%), Gaps = 51/394 (12%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTA 70
E RVLEFYSGIGGM Y L ++ V QV+++FDIN AN Y+ F Q +I++ +
Sbjct: 2 EQLRVLEFYSGIGGMHYGLQESGVDFQVIQSFDINTNANLNYKYTFNEDSSQKSIESYSV 61
Query: 71 AELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVV 130
EL+ + A+AWL+SPPCQP+TR GLQK D R SF +L+++ PP + +ENV
Sbjct: 62 EELEGFKANAWLMSPPCQPFTRLGLQKDDQDNRTNSFFHLLDVLTKIKDPPTYILIENVF 121
Query: 131 GFE---TSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRK-PLSFRC-Q 185
GF +S+T +++ L +Y QEF LSP QFG+ R RYFC+AKR L+F+ Q
Sbjct: 122 GFAKKGSSNTRDHLLDTLIKMNYSFQEFHLSPQQFGLANQRLRYFCIAKRNGKLNFKKEQ 181
Query: 186 LLNNQLLRSPSPLLGNDDMTVITKHDQ-------PDDSWDKLLESCDPVERFLEFSNSGD 238
+N+ + +++ K+D P + LE CD + + + + D
Sbjct: 182 DKHNEKVDENKLNNNSNNNNEQNKYDNLKILDHIPGYDFHTTLEECDEISNYFDKDLTDD 241
Query: 239 QVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKR 298
++ + + VP +L+ G DI DSK
Sbjct: 242 EL-------------------------------YEKYKVPHNLLLSKGMLFDIKQKDSKT 270
Query: 299 CCCFTKSYYRYVKGTGSLLATVQPKNKGKA-----SSLKEQHLRYFTPREVANLHSFPGD 353
C TKSY ++++GTGS+ +Q N KA SL LRYF+P+E+ LH FP +
Sbjct: 271 SNCVTKSYGKFIEGTGSI---IQMDNNFKADINDNKSLIPLKLRYFSPKEITRLHGFPEE 327
Query: 354 FQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 387
F+F L+ Q Y L+GNSL++ +V+ LL+ L +
Sbjct: 328 FKFSPKLTTIQCYRLIGNSLNVKIVSELLKVLVS 361
>sp|P40999|PMT1M_SCHPO tRNA (cytosine(38)-C(5))-methyltransferase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pmt1 PE=1 SV=1
Length = 330
Score = 205 bits (521), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 130/376 (34%), Positives = 186/376 (49%), Gaps = 61/376 (16%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAEL 73
RVLE YSGIGGM Y+L A++ A +V A DIN +AN++Y LN G +I LTA +
Sbjct: 8 RVLELYSGIGGMHYALNLANIPADIVCAIDINPQANEIYNLNHGKLAKHMDISTLTAKDF 67
Query: 74 DMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFE 133
D + W +SP CQP+TR G +K D R+ +FL IL ++PH P + +ENV GFE
Sbjct: 68 DAFDCKLWTMSPSCQPFTRIGNRKDILDPRSQAFLNILNVLPHVNNLPEYILIENVQGFE 127
Query: 134 TSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLR 193
S + ++L N Y E ILSP QF +P SR R++ LA+ L+F+ +
Sbjct: 128 ESKAAEECRKVLRNCGYNLIEGILSPNQFNIPNSRSRWYGLAR---LNFKGE-------- 176
Query: 194 SPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAA 253
W S D V +F E + +V +L
Sbjct: 177 -----------------------W-----SIDDVFQFSEVAQKEGEVKRIRDYL------ 202
Query: 254 VDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGT 313
E++R S ++V S++ +WG DIV PDS CCCFT+ Y V+G
Sbjct: 203 -----------EIERDWS--SYMVLESVLNKWGHQFDIVKPDSSSCCCFTRGYTHLVQGA 249
Query: 314 GSLLATVQPKNKGKASSLKEQ--HLRYFTPREVANLHSFPGDFQFPH-HLSLRQRYALLG 370
GS+L +N + LRYFT REVA L FP ++ +++ + Y LLG
Sbjct: 250 GSILQMSDHENTHEQFERNRMALQLRYFTAREVARLMGFPESLEWSKSNVTEKCMYRLLG 309
Query: 371 NSLSIAVVAPLLQYLF 386
NS+++ VV+ L+ L
Sbjct: 310 NSINVKVVSYLISLLL 325
>sp|P05102|MTH1_HAEPH Modification methylase HhaI OS=Haemophilus parahaemolyticus
GN=hhaIM PE=1 SV=1
Length = 327
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 149/384 (38%), Gaps = 80/384 (20%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAA 71
R ++ ++G+GG R +L A+ V + + + A +VYE+NFG +P +G+I +
Sbjct: 11 GLRFIDLFAGLGGFRLAL--ESCGAECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNEK 67
Query: 72 ELDMYGAHAWLLSP-PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVV 130
+ H L + PCQ ++ G QK D+R F I ++ K P ++F+ENV
Sbjct: 68 TIP---DHDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVRE--KKPKVVFMENVK 122
Query: 131 GFETSDTHAKMIEILANS----DYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQL 186
F + D + +E++ N+ DY +L+ L +G+P R R + + R
Sbjct: 123 NFASHD-NGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRND------- 174
Query: 187 LNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGF 246
LN Q + P P N T + PD + L+ ++R D V T
Sbjct: 175 LNIQNFQFPKPFELN---TFVKDLLLPDSEVEHLV-----IDR-------KDLVMTNQEI 219
Query: 247 LSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSY 306
T V L ++ + G I S R T S
Sbjct: 220 EQTTPKTVR-----------------------LGIVGKGGQGERIY---STRGIAITLSA 253
Query: 307 YRYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRY 366
Y G G T L R PRE A + +P ++ H S Q Y
Sbjct: 254 Y----GGGIFAKT--------GGYLVNGKTRKLHPRECARVMGYPDSYKV--HPSTSQAY 299
Query: 367 ALLGNSLSIAVVAPLLQYLFAQAG 390
GNS+ I V LQY+ G
Sbjct: 300 KQFGNSVVINV----LQYIAYNIG 319
>sp|P25263|MTC1_HERAU Modification methylase HgiCI OS=Herpetosiphon aurantiacus GN=hgiCIM
PE=3 SV=2
Length = 420
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 109/423 (25%), Positives = 170/423 (40%), Gaps = 58/423 (13%)
Query: 14 RVLEFYSGIGGMRYSLMKA----DVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLT 69
+ ++ ++GIGGMR +A + V + +I+ A Y +NF H QG+I
Sbjct: 3 KFIDLFAGIGGMRLGFEQAMHELGIETACVLSSEIDKHAQTTYAMNF-HEQSQGDI---- 57
Query: 70 AAELDMYGAHAWLLSP-PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVEN 128
++ + + +LL+ PCQP++ G QK D R F +I E I +P L +EN
Sbjct: 58 -TQIQDFPSFDFLLAGFPCQPFSYAGKQKGFGDTRGTLFFEI-ERILKAYRPKGFL-LEN 114
Query: 129 VVGFETSDTHAKMIEILANSDYLTQE--FILSPLQFGVPYSRPRYFC--LAKRKPL---- 180
V G T D IL L IL+ F VP +R R + L + +P
Sbjct: 115 VRGLTTHDKGRTFKTILQKLHELNYGVYLILNSSNFQVPQNRLRVYIVGLDQSQPELTIT 174
Query: 181 -------SFRCQLLNNQ--LLRSPSPLLGNDDMT--VITKHDQPDDSWDKLLESCD-PV- 227
S + + L+NQ L + +L D + + K++ D +KLL P+
Sbjct: 175 SHIGATDSHKFKQLSNQASLFDTNKIMLVRDILEDHPLDKYNCSTDFVNKLLAFIGHPIK 234
Query: 228 ---ERFLEFSNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIER 284
+R +++ N + E G T+ F A + L+ IE+
Sbjct: 235 LNGKRLIDYRNGNSIHSWELGIKGECTSDEIQFMNALIANRRKKHFGAHQDGKKLT-IEQ 293
Query: 285 WGSAMDIVYPDSKRCCCFTKSYYRYVKGT------------------GSLLATVQPKNKG 326
+ + DS TK Y + V G S+ T+ +
Sbjct: 294 IKTFFEHDDLDSIMQSLITKGYLQEVNGRFNPVAGNMSFEVFKFLDPDSVSITLVSSDAH 353
Query: 327 KASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLF 386
K + + +R TPRE A L FP FQF SL Y GNS+S+ VV ++ LF
Sbjct: 354 KIGVVHQNRIRRITPRECARLQGFPDSFQFHPKDSL--AYRQFGNSVSVPVVKAVILDLF 411
Query: 387 AQA 389
A
Sbjct: 412 KSA 414
>sp|P19888|MTBA_BACAR Modification methylase BanI OS=Bacillus aneurinolyticus GN=banIM
PE=1 SV=1
Length = 428
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 16/170 (9%)
Query: 14 RVLEFYSGIGGMRYSLMKA----DVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLT 69
+ ++ ++GIGG+R +A ++ + V + +I+ KA + Y LNF P QG+I +T
Sbjct: 4 KFVDLFAGIGGIRIGFERAAKRFELETECVLSSEIDKKACETYALNFKEEP-QGDIHEIT 62
Query: 70 A-AELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVEN 128
+ E D L PCQP++ G Q+ D R F ++ ++ P +EN
Sbjct: 63 SFPEFDF-----LLAGFPCQPFSYAGKQQGFGDTRGTLFFEVERVLRDN--RPKAFLLEN 115
Query: 129 VVGFETSD---THAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLA 175
V G T D T +I L Y +L+ FGVP +R R + L
Sbjct: 116 VRGLVTHDKGRTLKTIISKLEELGYGVSYLLLNSSTFGVPQNRVRIYILG 165
Score = 38.9 bits (89), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 315 SLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLS 374
S+ T+ + K ++ R TPRE A L FP DF H + Y LGNS++
Sbjct: 342 SISITLTSSDAHKLGVVQNNVPRRITPRECARLQGFPDDFIL--HSNDNFAYKQLGNSVT 399
Query: 375 IAVVAPLLQYLF 386
+ VV +++ LF
Sbjct: 400 VKVVEKVIEDLF 411
>sp|Q59603|MTB1_NEIGO Modification methylase NgoBI OS=Neisseria gonorrhoeae GN=ngoBIM
PE=3 SV=2
Length = 317
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 13/194 (6%)
Query: 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAE 72
++ ++ +SGIGG+R K + +D A VYE NFG +P+ G+I + ++
Sbjct: 2 YKTIDLFSGIGGIRLGFEKYGCTNVFSSEWD--KYARQVYEANFGEKPF-GDINGIDPSD 58
Query: 73 LDMYGAHAWLLSP-PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVG 131
+ H LL+ PCQP++ G D R F I E++ K P +ENV
Sbjct: 59 IP---DHDILLAGFPCQPFSIAGKGLGFEDTRGTLFFNIAEIL--KTKQPKAFLLENVKR 113
Query: 132 FETSD---THAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLN 188
T D T ++E L Y +L+ L FG+P R R + + + F
Sbjct: 114 LTTHDSGRTFRIVLETLKQLGYTVYFKVLNTLDFGLPQKRERIYIVGFSDNIPFYFPEPI 173
Query: 189 NQLLRSPSPLLGND 202
NQ R LL ND
Sbjct: 174 NQ-YRPLGELLEND 186
>sp|P34879|MTS2_SHISO Modification methylase SsoII OS=Shigella sonnei GN=ssoIIM PE=3 SV=1
Length = 379
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 14/194 (7%)
Query: 8 NDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQN 67
N+ +R+++ ++GIGG R + + + VV + + + A Y N+G P G+I
Sbjct: 67 NENGRYRMIDLFAGIGGTRLGFHQTN-AVNVVFSSEWDKFAQKTYHANYGDFP-DGDITK 124
Query: 68 LTAAELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVE 127
+ E D+ + PC +++ GL+K +D R F I +I K PH +E
Sbjct: 125 ID--EKDIPDHEILVGGFPCVAFSQAGLKKGFNDTRGTLFFDIARIIKE--KKPHAFLLE 180
Query: 128 NV---VGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRC 184
NV +G + T + + L +Y I + FGVP +R R + + K
Sbjct: 181 NVKNLLGHDKGRTFSIIKNTLEELNYTVYYNIFAAKDFGVPQNRERIYIVGFNKE----- 235
Query: 185 QLLNNQLLRSPSPL 198
++ N++ P+PL
Sbjct: 236 KVRNHEHFTFPTPL 249
Score = 38.5 bits (88), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 332 KEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 387
K + R TPRE + L FP DF P +S Q Y GNS+++ V+ + + + +
Sbjct: 322 KGSNPRKITPREASRLQGFPSDFIIP--VSDTQAYKQFGNSVAVPVINAIAEKIIS 375
>sp|P24581|MTNX_NEILA Cytosine-specific methyltransferase NlaX OS=Neisseria lactamica
GN=nlaXM PE=3 SV=1
Length = 313
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 11/168 (6%)
Query: 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAE 72
+++++ ++GIGG+R +A + V + +I+ A Y+ N G G+I A+
Sbjct: 2 FKIIDLFAGIGGIRLGFEQAFDDVRCVFSSEIDKYAVQTYQANHGGETVCGDITQTDVAD 61
Query: 73 LDMYGAHAWLLSP--PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVV 130
+ + +LS PCQP+++ GL+K +D R F I ++ K P +ENV
Sbjct: 62 IPDHD----ILSAGFPCQPFSQAGLKKGFADTRGTLFFDIERIL--LAKKPQAFLLENVK 115
Query: 131 GFETSDTHAKMIEILAN---SDYLTQEFILSPLQFGVPYSRPRYFCLA 175
+ D + ILA+ + Y +L FG+P +R R + +
Sbjct: 116 QLKGHDKGRTLQVILAHLQQAGYKVYTEVLKARDFGIPQNRERIYLVG 163
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 337 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 387
R TP E A L FP FQ P +S Q Y GNS+ + V+ + + + A
Sbjct: 255 RKITPPEAARLQGFPDSFQIP--VSDAQAYRQFGNSVCVPVIRAIAEQMKA 303
>sp|P34877|MTSA_LACLC Modification methylase ScrFIA OS=Lactococcus lactis subsp. cremoris
GN=scrFIAM PE=3 SV=1
Length = 389
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 22/216 (10%)
Query: 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAE 72
+++++ ++GIGG R + + V + +I+ A Y+ NFG P+ G+I + E
Sbjct: 79 YKMIDLFAGIGGTRLGFHQTEKVKSVFSS-EIDKFAIKTYKANFGDEPH-GDITKID--E 134
Query: 73 LDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGF 132
D+ + PCQ +++ G + D R F +I +I K P +ENV
Sbjct: 135 KDIPDHDILVGGFPCQAFSQAGKKLGFDDTRGTLFFEIARIIKE--KRPKAFLLENVKNL 192
Query: 133 ETSD---THAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLA-KRKPLSFRCQLLN 188
+T D T ++ L DY + FG+P +R R + + RK +S N
Sbjct: 193 KTHDKGRTFKTILNTLEELDYEVHTALFKARDFGLPQNRERIYIVGFDRKSIS------N 246
Query: 189 NQLLRSPSPL-----LGNDDMTVI-TKHDQPDDSWD 218
+ P+PL +GN +V+ K+ D WD
Sbjct: 247 YSDFQMPTPLQEKTRVGNILESVVDDKYTISDKLWD 282
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 332 KEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLF 386
K ++ R TPRE A L FP +F P +S Q Y GNS+++ + + + +
Sbjct: 329 KNKNPRKITPREAARLQGFPENFIIP--VSDTQAYKEFGNSVAVPTIHAIAEKML 381
>sp|P50185|MTD5_DACSA Modification methylase DsaV OS=Dactylococcopsis salina GN=dsaVM
PE=3 SV=1
Length = 351
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAEL 73
+ ++ ++GIGGMR ++ + V + +I+ YE NFG P G+I L+A
Sbjct: 7 KFIDLFAGIGGMRIPF--EELGGKCVFSSEIDKHCQRTYEANFGEMP-TGDITKLSA--- 60
Query: 74 DMYGAHAWLLSP-PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGF 132
D H LL+ PCQ +++ G ++ D R F ++ +++ P + +ENV G
Sbjct: 61 DSIPYHDLLLAGFPCQAFSQGGRKQGFQDERGQLFFQVAKILND--HRPQAILLENVKGL 118
Query: 133 ETSD---THAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLA 175
D T ++ +L +Y+ I+S F +P R R F +
Sbjct: 119 RGHDKGRTLQMILYVLEKLNYVVSWKIISATDFNLPQKRERIFIVG 164
Score = 35.0 bits (79), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 337 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 387
R TPRE A L FP F P +S Q + GNS+ ++V+ + Q + +
Sbjct: 259 RVLTPRECARLQGFPESFVIP--VSDCQAWRQFGNSVPVSVIRAIAQKMLS 307
>sp|P11408|MTM1_MORSP Modification methylase MspI OS=Moraxella sp. GN=mspIM PE=3 SV=1
Length = 418
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAE 72
++ ++ +SGIGG+R S + V + +I+ A Y NFG P+ ++T E
Sbjct: 105 FKFIDLFSGIGGIRQSFEVN--GGKCVFSSEIDPFAKFTYYTNFGVVPFG----DITKVE 158
Query: 73 LDMYGAHAWLLSP-PCQPYT----RQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVE 127
H L + PCQP++ R+G + + ++I+E T K P +LF+E
Sbjct: 159 ATTIPQHDILCAGFPCQPFSHIGKREGFEHPTQGTMFHEIVRIIE----TKKTP-VLFLE 213
Query: 128 NVVGFETSD---THAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLA 175
NV G D T +IE L + Y +L FG+P R R++ +A
Sbjct: 214 NVPGLINHDDGNTLKVIIETLEDMGYKVHHTVLDASHFGIPQKRKRFYLVA 264
>sp|O30868|MTH2_HAEAE Modification methylase HaeII OS=Haemophilus aegyptius GN=haeIIM
PE=3 SV=1
Length = 318
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 12/176 (6%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTA 70
+ ++ ++ ++GIGG+R + V + + + A +YE+NFG +P+ G+I +++
Sbjct: 2 KEYKTIDLFAGIGGIRLGF--EAFGCKNVFSSEWDKYAQSMYEVNFGEKPF-GDINDISP 58
Query: 71 AELDMYGAHAWLLSP-PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129
+++ H LL+ PCQP++ G +D R F I ++ K P +ENV
Sbjct: 59 SDIP---DHDILLAGFPCQPFSIAGKGLGFADTRGTLFFNIEAIL--KAKKPKAFLLENV 113
Query: 130 VGFETSD---THAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSF 182
T D T + + L Y +L+ L FG+P R R + + L F
Sbjct: 114 KRLTTHDNGNTFKVINDKLNKLGYTVYHKVLNTLDFGLPQKRERIYIVGFLDKLHF 169
>sp|P17044|MTBF_BACIU Modification methylase BsuFI OS=Bacillus subtilis GN=hsdFM PE=3
SV=1
Length = 409
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Query: 7 KNDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQ 66
+N G ++ ++GIGG+R D + V + + + A YE N+G +P+ G+I
Sbjct: 95 QNRGIKLTFIDLFAGIGGIRLGF--EDKYTKCVFSSEWDKYAAQTYEANYGEKPH-GDIT 151
Query: 67 NLTAAELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFV 126
+ E D+ L PCQP++ G ++ + R +L ++ K P M +
Sbjct: 152 KIN--ENDIPDQDVLLAGFPCQPFSNIGKREGFAHERRNIIFDVLRILKK--KQPKMFLL 207
Query: 127 ENVVGFETSDTHAKMIEILANSDYLTQEF---ILSPLQFGVPYSRPRYFCLA 175
ENV G T+D IL N L ++ FG+P R R +
Sbjct: 208 ENVKGLLTNDNGNTFRVILDNLKSLGYSVFYEVMDAQNFGLPQRRERIVIVG 259
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 333 EQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 381
E LR F+ E+ L FP DF+ P +S Q Y GNS+++ ++ +
Sbjct: 345 ETGLRLFSELELKRLMGFPVDFKVP--VSRTQMYRQFGNSVAVPMIKAV 391
>sp|P15446|MTH2_HAEPA Modification methylase HpaII OS=Haemophilus parainfluenzae
GN=hpaIIM PE=1 SV=1
Length = 358
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTA 70
E + ++ ++GIGG R ++ ++ + + + + +++A YE NFG PY ++T
Sbjct: 30 EKFTFIDLFAGIGGFRIAMQ--NLGGKCIFSSEWDEQAQKTYEANFGDLPY----GDITL 83
Query: 71 AELDMYGAHAWLL---SPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVE 127
E + + + PCQ ++ G + D R F + E+I P F+E
Sbjct: 84 EETKAFIPEKFDILCAGFPCQAFSIAGKRGGFEDTRGTLFFDVAEIIRR--HQPKAFFLE 141
Query: 128 NVVGFETSDTHAKMIEIL----ANSDYLTQE-FILSPLQFGVPYSRPRYFCLAKRK 178
NV G + D + IL + Y E I++ FGVP +R R + + K
Sbjct: 142 NVKGLKNHDKGRTLKTILNVLREDLGYFVPEPAIVNAKNFGVPQNRERIYIVGFHK 197
>sp|P29567|MTHT_METTF Modification methylase MthTI OS=Methanobacterium thermoformicicum
GN=mthTIM PE=3 SV=1
Length = 330
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 13/177 (7%)
Query: 15 VLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAEL- 73
+ F+SG GG+ KA + +V A D +E N G + + I+ L +E+
Sbjct: 5 IASFFSGAGGLDLGFTKAGFN--IVFANDNWKGCWKTFEKNHGIKINKKPIEWLKPSEIP 62
Query: 74 DMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFE 133
D+ G ++ PPCQ ++ G + D R +F ++L+ K P ENV G
Sbjct: 63 DVVG---FIGGPPCQSWSLAGSMCGADDPRGKTFYAYVDLVKE--KDPLFFLAENVPGI- 116
Query: 134 TSDTHAKMIEILANS----DYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQL 186
S TH + L NS Y + +L+ +GVP R R F + R+ L+ + +
Sbjct: 117 VSRTHLPEFKRLVNSFIDIGYNVEYKVLNAKDYGVPQDRKRVFIVGYREDLNLKFEF 173
>sp|P20589|MTH3_HAEAE Modification methylase HaeIII OS=Haemophilus aegyptius GN=haeIIIM
PE=1 SV=1
Length = 330
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 134/365 (36%), Gaps = 61/365 (16%)
Query: 15 VLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELD 74
++ +SG GG+ KA +++ A + + YE N + +G+I +++ E
Sbjct: 3 LISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFP 60
Query: 75 MYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFET 134
+ PPCQ ++ G + D R F + + ++ K P ENV G
Sbjct: 61 K--CDGIIGGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQ--KKPIFFLAENVKGM-M 115
Query: 135 SDTHAK----MIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQ 190
+ H K I+ N+ Y +L+ +GV R R F + FR +L N
Sbjct: 116 AQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIG------FRKELNINY 169
Query: 191 LLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTG 250
L P P L K D WD +++ N N E
Sbjct: 170 L--PPIPHL--------IKPTFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEY------ 213
Query: 251 TAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYV 310
F + T+ + R + + +W V ++C ++
Sbjct: 214 ------FIGSYSTIFMSR-----------NRVRQWNEPAFTVQASGRQCQLHPQA----- 251
Query: 311 KGTGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLG 370
++ V KN K KE R T RE A + FP DF F H+ SL Y ++G
Sbjct: 252 ----PVMLKVS-KNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIG 305
Query: 371 NSLSI 375
N++ +
Sbjct: 306 NAVPV 310
>sp|P24600|MTD1_HERAU Modification methylase HgiDI OS=Herpetosiphon aurantiacus GN=hgiDIM
PE=3 SV=1
Length = 309
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAE- 72
+ ++ ++G GGM M+A ++V A D A + Y+ NF H ++ ++ + AA
Sbjct: 2 KTIDLFAGCGGMSLGFMQAGF--EIVAAVDNWRPAINTYQQNFTHPIHELDLAQIDAAVS 59
Query: 73 -LDMYGAHAWLLSPPCQPYTRQGLQKQSSDARA---FSFLKILELIPHTVKPPHMLFVEN 128
+ + + PPCQ ++ G ++ RA F KI+ I P + +EN
Sbjct: 60 LIKTHSPELIIGGPPCQDFSSAG-KRDEGLGRANLTLDFAKIVLAIQ-----PAWVIMEN 113
Query: 129 VVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKR 177
V S H + +L + Y + +L GVP R R F + R
Sbjct: 114 VERARLSKIHQQACSMLGDEGYSLAQVVLDASLCGVPQLRKRTFVIGHR 162
>sp|P34906|MTF1_FUSNU Modification methylase FnuDI OS=Fusobacterium nucleatum GN=fnuDIM
PE=3 SV=1
Length = 344
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 141/368 (38%), Gaps = 62/368 (16%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAEL 73
++L +SG GG+ +A V +D + YE N + + +I+ + + EL
Sbjct: 2 KLLSLFSGAGGLDLGFERAGFEIIVANEYD--KTIWETYEKNHKAKLIKKDIREILSEEL 59
Query: 74 DMYGAHAWLLSPPCQPYTRQGLQKQSSDARA---FSFLKILELIPHTVKPPHMLFVENVV 130
+ + PPCQ ++ G + +D R + +++IL+ I P ENV
Sbjct: 60 PK--SDGIIGGPPCQSWSEAGSLRGINDPRGKLFYEYIRILKDI-----QPKFFLAENVK 112
Query: 131 GF---ETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLL 187
G ++ +I+ + Y +L+ +GV R R F + RK L
Sbjct: 113 GMLSKRNTEAVKDIIKEFEEAGYNVFIKLLNAFDYGVAQDRERVFYVGFRKD-------L 165
Query: 188 NNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFL 247
N P P+ + + D WD L ++ P + + + D E
Sbjct: 166 NISNFEFPYPISEKERKYL------KDSIWD-LKDNALPGKD--KNKTNADDCIVENHEY 216
Query: 248 STGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYY 307
TG+ + T+ + R + + P ++ G + +P + K+ Y
Sbjct: 217 LTGSYS---------TIFMSRN-RVRQWEQPAFTVQASGRQCQL-HPQAPTMIKIDKNMY 265
Query: 308 RYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYA 367
++V G KE R + RE A + FP F+F ++ SL Y
Sbjct: 266 KFVAG-------------------KENLYRRLSIRECARIQGFPDTFKF-YYTSLEDGYK 305
Query: 368 LLGNSLSI 375
++GN++ +
Sbjct: 306 MVGNAVPV 313
>sp|P25262|MTB1_HERAU Modification methylase HgiBI OS=Herpetosiphon aurantiacus GN=hgiBIM
PE=3 SV=1
Length = 437
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTA 70
+ +R ++ ++GIGG R L V V + +I+ +A VY N+ N+ ++TA
Sbjct: 2 QQFRFIDLFAGIGGFRLGLEA--VGGVCVASAEIDQQAIKVYRQNWPTDGVDHNLGDITA 59
Query: 71 AELDMYGAHAWLLSP-PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129
+ AH L+ PCQP++ G + D R + ++ L+ + P ENV
Sbjct: 60 --IQQLPAHDVLVGGVPCQPWSIAGKNQAFDDPRGQLWADVIRLV--QINQPKAFIFENV 115
Query: 130 VGFETSDTHAKM-IEILANS----DYLTQEFILSPLQFGVPYSRPRYFCLAKRKPL 180
G D ++ +EI+ +S Y +L+ FGV +R R F + ++ L
Sbjct: 116 KGL--VDPRNRLCLEIILDSFKDLGYSVFYKLLNSFDFGVAQNRDRVFIVGIQQKL 169
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 334 QHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYL 385
+ R T E A L FPG FQF H + + L+GNS++ V+ L + L
Sbjct: 375 KRYRKITVSEAARLQGFPGSFQF--HSNQSANFRLIGNSVAPPVIVALGKAL 424
>sp|O34939|YDIO_BACSU Probable BsuMI modification methylase subunit YdiO OS=Bacillus
subtilis (strain 168) GN=ydiO PE=2 SV=1
Length = 427
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 22/196 (11%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKA----DVSAQVVEAFDINDKANDVYELNFG-----HRPY 61
E+ + + +SG GG+ + +A ++ + A D+N+ A VYE NF +
Sbjct: 82 ESINIADLFSGCGGLSLGVWEACRALGINPRFSFACDLNEAALSVYEKNFSPDFSLNESI 141
Query: 62 QGNIQNLTAAELDMYGAHA---------WLLSPPCQPYTRQGLQKQSSDARAFSFLKILE 112
+ +I A L + L PPCQ ++ + D R +++
Sbjct: 142 EKHINGELGAPLTVEEQRIKDKVKKIDFILAGPPCQGHSDLNNHTRRKDPRNALLMRVSR 201
Query: 113 LIPHTVKPPHMLFVENVVGF--ETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPR 170
+I + P + VENV G + S + + L Y E +L+ + GV +R R
Sbjct: 202 VI--ELFQPSSVLVENVPGIIHDKSGSFKEFKNHLKTQGYYFDEIVLNAEKLGVSQARRR 259
Query: 171 YFCLAKRKPLSFRCQL 186
YF A + P+S Q+
Sbjct: 260 YFIFASKTPVSSLNQI 275
>sp|P45000|MTH5_HAEIN Modification methylase HindV OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=hindVM PE=3 SV=1
Length = 304
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAA-- 71
+ ++ +SG GG+ A ++ AF+ +KA ++Y+ NF H Y +++N A
Sbjct: 2 KCVDLFSGCGGLSLGFELAGF--EICAAFENWEKAIEIYKNNFSHPIYNIDLRNEKEAVE 59
Query: 72 ELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARA---FSFLKILELIPHTVKPPHMLFVEN 128
++ Y + PPCQ ++ G ++ S RA +SF I+ I P +EN
Sbjct: 60 KIKKYSPDLIMGGPPCQDFSSAG-KRDISLGRADLTYSFANIVCNI-----RPKWFVMEN 113
Query: 129 VVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAK 176
V + S +I + Y IL GVP SR R+ + K
Sbjct: 114 VEQIKKSHILQDIINQFIDFGYGLTSAILDASYCGVPQSRTRFSLIGK 161
>sp|P31974|MTA1_CELCE Modification methylase AluI OS=Cellulosimicrobium cellulans
GN=aluIM PE=3 SV=1
Length = 521
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 103/487 (21%), Positives = 168/487 (34%), Gaps = 134/487 (27%)
Query: 16 LEFYSGIGGMRYSLMKADVSAQVVE-AFDINDKANDVYELNFGHRPYQGNIQ---NLTAA 71
++ ++GIGG +L + V E A +I+ +A VYE N+ ++P G+I N
Sbjct: 11 VDLFAGIGGFHAALA---ATGGVCEYAVEIDREAAAVYERNW-NKPALGDITDDANDEGV 66
Query: 72 ELDMYGAHAWLLSP--PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129
L Y +L+ PCQP+++ G Q ++ R F I +I + P +L +ENV
Sbjct: 67 TLRGYDGPIDVLTGGFPCQPFSKSGAQHGMAETRGTLFWNIARIIEE--REPTVLILENV 124
Query: 130 VGFETSDTHAKMIEILANSDYLTQEFILSPLQF----------GVPYSRPRYFCLAKRKP 179
+ + I+ + E +P F G P R R F A P
Sbjct: 125 RNLVGPRHRHEWLTIIETLRFFGYEVSGAPAIFSPHLLPAWMGGTPQVRERVFITATLVP 184
Query: 180 LSFR-----------------------------------------------CQLLNNQLL 192
R LL + ++
Sbjct: 185 ERMRDERIPRTETGEIDAEAIGPKPVATMNDRFPIKKGGTELFHPGDRKSGWNLLTSGII 244
Query: 193 RSPSPLLGNDDMTVITKHDQPDDSWDKLLESC-----DPVERFLEFSNS----------- 236
R P N D+ + D+WD L + P+E F +++S
Sbjct: 245 REGDPEPSNVDLRLTETETLWIDAWDDLESTIRRATGRPLEGFPYWADSWTDFRELSRLV 304
Query: 237 -------------GD------QVNTETGFL--STGTAAVDDFGAAEETVEVDRCVSI--D 273
GD + + GF+ S A+D+ A + + R
Sbjct: 305 VIRGFQAPEREVVGDRKRYVARTDMPEGFVPASVTRPAIDETLPAWKQSHLRRNYDFFER 364
Query: 274 HFLVPLSLIERWGSAMDIVYPDSKR---------------CCCFTKSYYRYVKGT--GSL 316
HF ++ RWG D+ +P S+R F S R + T +L
Sbjct: 365 HFAEVVAWAYRWGVYTDL-FPASRRKLEWQAQDAPRLWDTVMHFRPSGIRAKRPTYLPAL 423
Query: 317 LATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIA 376
+A Q +S+ R +PRE A L P F F + Y +GN +++
Sbjct: 424 VAITQ-------TSIVGPLERRLSPRETARLQGLPEWFDFGEQRAA-ATYKQMGNGVNVG 475
Query: 377 VVAPLLQ 383
VV +L+
Sbjct: 476 VVRHILR 482
>sp|Q8EL95|MT36_OCEIH Putative modification methylase OB3336 OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=OB3336 PE=3 SV=1
Length = 460
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 26/188 (13%)
Query: 15 VLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG------HRPYQGNIQNL 68
V++ +SG GG+ A + + + +++ A+DV N R +I L
Sbjct: 17 VVDLFSGCGGLALGFQLAGFN--IRKGIELDRDASDVASFNLHWRQGKHDRHLNNDITLL 74
Query: 69 TAAE----LDMYGAHAWLLSPPCQPYTRQGLQK---------QSSDARAFSFLKILELIP 115
+A E LD + PPCQ Y++ G K Q +DAR + L+
Sbjct: 75 SANEFYNDLDRKNDLIVIGGPPCQAYSKIGRAKLKSLGEERRQENDARGKLYENFLDYAL 134
Query: 116 HTVKPPHMLFVENV---VGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYF 172
H +++ +ENV V + + + +IL N Y +L+ FGVP +R R F
Sbjct: 135 HV--DANVIVMENVPEAVNYGGVNIPDTVCDILINKGYDAIWTVLNAADFGVPQTRVRLF 192
Query: 173 CLAKRKPL 180
+A +K +
Sbjct: 193 VMAIKKDI 200
>sp|P25266|MTE1_HERAU Modification methylase HgiEI OS=Herpetosiphon aurantiacus GN=hgiEIM
PE=3 SV=1
Length = 437
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTA 70
+ +R ++ ++GIGG R L V V + +I+ +A VY N+ N+ ++T
Sbjct: 2 QQFRFIDLFAGIGGFRLGLEA--VGGVCVASAEIDQQAIKVYWQNWPTDGVDHNLGDIT- 58
Query: 71 AELDMYGAHAWLLSP-PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129
++ AH L+ PCQP++ G + D R + ++ L+ + P ENV
Sbjct: 59 -QIQQLPAHDVLVGGVPCQPWSIAGKNQAFDDPRGQLWADVIRLV--QINQPKAFIFENV 115
Query: 130 VGFETSDTHAKM-IEILANS----DYLTQEFILSPLQFGVPYSRPRYFCLAKRKPL 180
G D ++ +EI+ +S Y +L+ FGV +R R F + ++ L
Sbjct: 116 KGL--VDPRNRLCLEIILDSFKDLGYSVFYKLLNSFDFGVAQNRDRVFIVGIQQKL 169
>sp|P34882|MTAA_SYNP2 Modification methylase AquI subunit alpha OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=aquIMA PE=3
SV=1
Length = 248
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-QGNIQNLT--- 69
+++ +SG GGM A S V A + + + LN P +G+I ++T
Sbjct: 4 KLISLFSGAGGMDIGFHAAGFSTAV--AVEQDPSCCNTLRLNMPDTPVIEGDITSITTQV 61
Query: 70 ---AAELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFV 126
AA+++ + PPCQ ++ G + D R L+ L ++ + P +
Sbjct: 62 ILEAAKVNPLEIDLVIGGPPCQSFSLAGKRMGMDDPRGMLVLEFLRVVREAL--PKCFVM 119
Query: 127 ENVVGF----ETSDTHAKMIEILANSDYLTQEF-------ILSPLQFGVPYSRPRYFCLA 175
ENV G + A M E Y +E+ +L+ FGVP R R F +
Sbjct: 120 ENVKGMINWSKGKALEAIMTEASQPIKYAGKEYKYAVSYHVLNAADFGVPQFRERVFIVG 179
Query: 176 KRKPLSFR 183
R +F+
Sbjct: 180 NRLGKTFQ 187
>sp|P43420|MTB6_BACSF Modification methylase Bsp6I OS=Bacillus sp. (strain RFL6)
GN=bsp6IM PE=3 SV=1
Length = 315
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 20/218 (9%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAEL 73
++ ++G+GG+ + + V A + + A Y+ NF ++ +I+N+ ++
Sbjct: 3 QIASLFAGVGGIDLGFEQTGY-FETVWANEYDKNAAITYQSNFKNKLIIDDIRNIKVEDV 61
Query: 74 DMYGAHAWLLSP-PCQPYTRQGLQKQSSDARAFS-FLKILELIPHTVKPPHMLFVENV-- 129
+ LLS PC ++ G +K D ++ F + L LI K P ++F+ENV
Sbjct: 62 PDFDV---LLSGFPCTSFSVAGYRKGFEDEKSGDLFFETLRLI--VAKKPQVIFLENVKN 116
Query: 130 -VGFETSDTHAKMIEILANSDYLTQEFILSPLQFG-VPYSRPRYFCLAKRKPLSFRCQLL 187
VG + +T + E L ++ Y + +L+ FG +P +R R + + R ++
Sbjct: 117 LVGHDNGNTFKVIYEALESNGYHIKYQVLNAKDFGNIPQNRERIYIVGFRNIEHYK---- 172
Query: 188 NNQLLRSPSPL-LGNDDMTVITKHDQPDDSWDKLLESC 224
N P PL L DM I D+ DD + + C
Sbjct: 173 -NFNFPMPQPLTLTIKDM--INLSDKLDDRFYYTEDKC 207
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 308 RYVKGTGSLLATVQPKNKGKASS----LKEQH-LRYFTPREVANLHSFPGDFQFPHHLSL 362
+YV+ S + N G +K +H +R TPRE N +P DF P L+
Sbjct: 229 KYVRENKSNVCPTLTANMGTGGHNVPLVKTKHGIRKLTPRECFNFQGYPEDFILP-ELAP 287
Query: 363 RQRYALLGNSLSIAVVAPLLQYLF 386
Y GNS+ + V+ + + ++
Sbjct: 288 THLYKQAGNSVVVPVIRRIAENIY 311
>sp|P25264|MTC2_HERAU Modification methylase HgiCII OS=Herpetosiphon aurantiacus
GN=hgiCIIM PE=3 SV=1
Length = 437
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 10/173 (5%)
Query: 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAE 72
+R ++ ++GIGG R L V V + +I+ +A VY N+ + N+ ++T
Sbjct: 4 FRFIDLFAGIGGFRLGLEA--VGGICVGSAEIDQQAIKVYRQNWPTDRSEHNLGDITT-- 59
Query: 73 LDMYGAHAWLLSP-PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVG 131
L AH ++ PCQP++ G + D R + ++ L+ + P ENV G
Sbjct: 60 LQQLPAHDLVVGGVPCQPWSIAGKNQAFDDPRGQLWADVIRLV--RINQPKAFIFENVKG 117
Query: 132 FETSDTHAKMIEILAN---SDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLS 181
+ IL + Y +L+ +GV +R R F + ++ L
Sbjct: 118 LIDPRNRLCLESILDSFKAEGYNVYYKLLNSFDYGVAQNRDRVFIIGIQQKLG 170
>sp|P00476|MTBS_BPSPR Modification methylase SPRI OS=Bacillus phage SPR PE=3 SV=1
Length = 439
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 21/178 (11%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKA--------NDVYELNFGHRPYQGNI 65
RV+ +SGIG +L V ++V +I+ A N +LNFG I
Sbjct: 5 RVMSLFSGIGAFEAALRNIGVGYELVGFSEIDKYAVKSFCAIHNVDEQLNFGDVS---KI 61
Query: 66 QNLTAAELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLF 125
E D+ + PCQ ++ G +K D R F + +E + K P
Sbjct: 62 DKKKLPEFDL-----LVGGSPCQSFSVAGHRKGFEDTRGTLFFQYVETLKE--KQPKFFV 114
Query: 126 VENVVGF---ETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPL 180
ENV G + +T M E + Y +L+ F VP +R R + + R+ L
Sbjct: 115 FENVKGLINHDKGNTLNVMAEAFSEVGYRIDLELLNSKFFNVPQNRERLYIIGIREDL 172
>sp|P09915|MTBR_BPRH1 Modification methylase Rho11sI OS=Bacillus phage rho11s PE=3 SV=2
Length = 503
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 21/178 (11%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVY--------ELNFGHRPYQGNI 65
RV+ +SGIG +L V ++V +I+ A Y +LNFG I
Sbjct: 5 RVMSLFSGIGAFEAALRNIGVEYELVGFSEIDKYAIKSYCAIHNADEQLNFGD---VSKI 61
Query: 66 QNLTAAELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLF 125
E D+ + PCQ ++ G +K D R F + ++ + K P
Sbjct: 62 DKKKLPEFDL-----LVGGSPCQSFSVAGYRKGFEDTRGTLFFQYIDTLKE--KQPRYFV 114
Query: 126 VENVVGF---ETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPL 180
ENV G + +T M E + Y +L+ F VP +R R + + R+ L
Sbjct: 115 FENVKGLINHDKGNTLNIMAESFSEVGYRIDLELLNSKFFNVPQNRERIYIIGVREDL 172
>sp|P50188|MTN1_NOCAE Modification methylase NaeI OS=Lechevalieria aerocolonigenes
GN=naeIM PE=3 SV=1
Length = 413
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 8/165 (4%)
Query: 15 VLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAE-L 73
V+E +G GG L KA S ++ D+N A L G++ + + +
Sbjct: 6 VVEICAGAGGQALGLEKAGFSHRLAVELDVNAAATLRKNLK-SDVVITGDVADPSVLNPM 64
Query: 74 DMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFE 133
+ G PC P++ G Q + D R F +EL V P L +ENV G
Sbjct: 65 EHLGVSLLAGGVPCPPFSIAGKQLGADDMRDL-FAWAVELC--DVMKPRALMLENVRGLS 121
Query: 134 T---SDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLA 175
+ +++ L + Y+ + +L FGVP RPR+ +A
Sbjct: 122 MPRFAGYRQHVLDRLNDMGYVAEWRLLHASDFGVPQLRPRFVLVA 166
>sp|P08455|MTP2_NEIGO Modification methylase NgoPII OS=Neisseria gonorrhoeae GN=ngoPIIM
PE=3 SV=2
Length = 330
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 74/376 (19%), Positives = 132/376 (35%), Gaps = 77/376 (20%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP----YQGNIQNLT 69
+++ +SG GG+ KA +D ++ + P +G+I+ +
Sbjct: 2 KIISLFSGCGGLDLGFEKAGFEIPAANEYD-----KTIWATFKANHPKTHLIEGDIRKIK 56
Query: 70 AA----ELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARA---FSFLKILELIPHTVKPPH 122
E+D + PPCQ ++ G + DAR F +++IL+ K P
Sbjct: 57 EEDFPEEID-----GIIGGPPCQSWSEAGALRGIDDARGQLFFDYIRILK-----SKQPK 106
Query: 123 MLFVENVVGFETSDTHAKMIEILANSDYLTQEFILS---PLQFGVPYSRPRYFCLAKRKP 179
ENV G + + + +L D + L+ +GV R R F + RK
Sbjct: 107 FFLAENVSGMLANRHNGAVQNLLKMFDGCGYDVTLTMANAKDYGVAQERKRVFYIGFRKD 166
Query: 180 LSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQ 239
L + + +D IT D D D + S + + D
Sbjct: 167 LEIKFSFPKGSTV---------EDKDKITLKDVIWDLQDTAVPSAP------QNKTNPDA 211
Query: 240 VNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRC 299
VN F TG S + + ++ W V ++C
Sbjct: 212 VNNNEYF--TG--------------------SFSPIFMSRNRVKAWDEQGFTVQASGRQC 249
Query: 300 CCFTKSYYRYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHH 359
++ G N + ++ KE R T REVA + FP +F+F +
Sbjct: 250 QLHPQAPKMEKHGA----------NDYRFAAGKETLYRRMTVREVARIQGFPDNFKFIYQ 299
Query: 360 LSLRQRYALLGNSLSI 375
++ Y ++GN++ +
Sbjct: 300 -NVNDAYKMIGNAVPV 314
>sp|P05302|MTD1_DESNO Modification methylase DdeI OS=Desulfomicrobium norvegicum (strain
DSM 1741 / NCIMB 8310) GN=ddeIM PE=3 SV=1
Length = 415
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 19/194 (9%)
Query: 15 VLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTAAEL 73
+++ ++G GG + A ++ + A + + A+ Y N + +I L +L
Sbjct: 3 IIDLFAGCGGFSHGFKMAGYNS--ILAIEKDLWASQTYSFNNPNVSVITEDITTLDPGDL 60
Query: 74 DMY--GAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVG 131
+ + PPCQ ++ G + Q D R F+ + + P +ENV+G
Sbjct: 61 KISVSDVDGIIGGPPCQGFSLSGNRDQK-DPRNSLFVDFVRFVKFF--SPKFFVMENVLG 117
Query: 132 FETSDTHAK------MIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQ 185
+ T ++ + E +N Y IL+ +GVP SR R F + + +
Sbjct: 118 ILSMKTKSRQYVKDIIAEEFSNVGYKVCVIILNACDYGVPQSRQRVFFIGLKSD-----R 172
Query: 186 LLNNQLLRSPSPLL 199
LN Q+L PS ++
Sbjct: 173 PLNQQILTPPSKVI 186
>sp|P50196|MTE8_ECOLX Modification methylase Eco47II OS=Escherichia coli GN=eco47IIM PE=3
SV=1
Length = 417
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 72/195 (36%), Gaps = 34/195 (17%)
Query: 4 DMCKNDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFD-------------INDKAND 50
D K + VLE ++G GGM L KA + + ++ D N D
Sbjct: 72 DETKISNNVYTVLELFAGAGGMALGLEKAGLKSVLLNEIDSHACKTLRKNRPEWNVVEGD 131
Query: 51 VYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKI 110
V +++F PY+ + L PCQ ++ G + D R F +
Sbjct: 132 VSQVDF--TPYRNTVDVLAGGF-------------PCQAFSYAGKKLGFEDTRGTLFFEF 176
Query: 111 LELIPHTVKPPHMLFVENVVGFETSD---THAKMIEILANSDY-LTQEFILSPLQFGVPY 166
P +L ENV G D T + I+ + Y L + +L + + VP
Sbjct: 177 ARAAKEI--NPKVLLAENVRGLLNHDAGRTLETIKNIITDLGYTLFEPRVLKAIFYKVPQ 234
Query: 167 SRPRYFCLAKRKPLS 181
R R +A R L+
Sbjct: 235 KRERLIIVAVRNDLA 249
>sp|P94147|MTA1_RUEGE Modification methylase AgeI OS=Ruegeria gelatinovora GN=ageIM PE=3
SV=1
Length = 429
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 84 SPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIE 143
PPCQ ++ G Q++ DAR ++ + P +ENVVG + A + +
Sbjct: 77 GPPCQGFSTYG-QRRDDDARNQLYVPYFGFVEEFR--PKAFLIENVVGLLSMSGGAVLAD 133
Query: 144 ILANSD---YLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLG 200
++A ++ Y L ++GVP R R F + Q + P P
Sbjct: 134 MVARAEALGYAADVVTLDACEYGVPQHRRRVFIFGA----------ADGQRIDPPQPSHV 183
Query: 201 NDDMTVITKHDQP 213
N + + +DQP
Sbjct: 184 NGKRSGVVLNDQP 196
>sp|P06530|MTBR_BACIU Modification methylase BsuRI OS=Bacillus subtilis GN=hsdRM PE=3
SV=1
Length = 436
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 38/215 (17%)
Query: 15 VLEFYSGIGGMRYSLMKADVSAQV-----VEAFDINDKANDVYELNFGHRPYQGNI---- 65
VL +SG GG+ A ++A + +EAF D+ N++ + H Y ++
Sbjct: 61 VLSLFSGCGGLDLGFELAGLAAVIGEQAAMEAFKDKDRFNELRNKSIFHTIYTNDLFKEA 120
Query: 66 ---------QNLTAAELDMYGAHAW------LLSPPCQPYTRQGLQKQSSDARAFSFLKI 110
++ E D+ + L PC ++ G + D R F +L
Sbjct: 121 NQTYKTNFPGHVIQHEKDIRQVKYFPKCNLILGGFPCPGFSEAG-PRLIDDDRNFLYLHF 179
Query: 111 LELIPHTVKPPHMLFVENVVGFET---SDTHAKMIEILANSDYLTQEFILSPLQFGVPYS 167
+ + P + ENV G T + ++IE A++ Y Q +L+ +GVP
Sbjct: 180 IRSLIQA--QPEIFVAENVKGMMTLGKGEVLNQIIEDFASAGYRVQFKLLNARDYGVPQL 237
Query: 168 RPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGND 202
R R RK +SF + PSP G +
Sbjct: 238 RERVIIEGVRKDISFNYKY--------PSPTHGEE 264
>sp|O31073|MTS1_STRAH Modification methylase SacI OS=Streptomyces achromogenes GN=sacIM
PE=3 SV=1
Length = 390
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 15 VLEFYSGIGGMRYSL-------MKADVSA---QVVEAFDINDKANDVYELNFGH-RPYQG 63
V+ +SG GG+ ++ + D S +V A D A D NF H + G
Sbjct: 7 VISLFSGAGGLDCAIESCAEPPLVQDGSGSPLRVAVATDYEQTALDTLSANFPHTKTLCG 66
Query: 64 NIQNLTAAELDMYGA------HAWLLSPPCQPYTRQGL----QKQSSDARAFSFLKILEL 113
+IQ + AEL G + PPC P+++ G ++ S+D A + + +
Sbjct: 67 DIQTIPTAELLEAGGLKPGDPTLVIGGPPCTPFSKSGFWIEEKRNSADPNASLLDEYVRV 126
Query: 114 IPHTVKPPHMLFVENVVGFETSDTHA----KMIEILANSDYLTQEFILSPLQFGVP 165
+ + P +ENV G T TH ++I L ++ Y +L ++GVP
Sbjct: 127 VRESK--PEAFILENVQGL-TYKTHQAQFDRLIAGLKDAGYNPTFRVLLAAEYGVP 179
>sp|P05101|MTE2_ECOLX Modification methylase EcoRII OS=Escherichia coli GN=ecoRIIM PE=3
SV=1
Length = 477
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 31/170 (18%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF----GHRPYQGNIQN 67
A+R ++ ++GIGG+R + Q V + N +A Y+ N+ + +I+
Sbjct: 95 AFRFIDLFAGIGGIRKGF--ETIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIRE 152
Query: 68 LTAA------ELDMYG-------AHAWLLSP-PCQPYTRQGLQKQSSDARAFS------- 106
+T + E D Y H LL+ PCQP++ G+ K++S RA
Sbjct: 153 VTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECEAQG 212
Query: 107 --FLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQE 154
F + +I K P + +ENV ++ D I+ D L E
Sbjct: 213 TLFFDVARII--RAKKPAIFVLENVKNLKSHDKGKTFKVIMDTLDELGYE 260
>sp|O34680|YDIP_BACSU Probable BsuMI modification methylase subunit YdiP OS=Bacillus
subtilis (strain 168) GN=ydiP PE=2 SV=1
Length = 389
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 17/170 (10%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAF-DINDKANDVYELNFGHRPYQGNIQNLTA-A 71
+V+ +SGIGG+ L + S E F +++ A V NF + +I +
Sbjct: 2 KVVSLFSGIGGIELGLHQ---SGHTTEIFCEVDPLAKAVLSKNFPGVKIEDDINEIRELP 58
Query: 72 ELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELI---PHTVKPPHMLFVEN 128
D+ A PCQ ++ G ++ +R+ K+ ELI H +PP +L +EN
Sbjct: 59 SCDLVAAGF-----PCQDLSQAGGKEGIDGSRSGLVKKLFELIEKKEHANRPPWIL-IEN 112
Query: 129 V---VGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLA 175
V + + + +L+ Y + FG+P R R LA
Sbjct: 113 VPYMLRLNRGKAMSYLTSVLSELGYTWAYRTVDARCFGLPQRRHRVILLA 162
>sp|P34878|MTSB_LACLC Modification methylase ScrFIB OS=Lactococcus lactis subsp. cremoris
GN=scrFIBM PE=3 SV=1
Length = 360
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 57/222 (25%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDI--------------------------NDK 47
RV E ++G G R +L+KA++ ++V +I +D+
Sbjct: 3 RVFEAFAGYGSQRLALIKANIPHEIVGISEIEGDVLLSYSAIHENLLEERNKNIKLTDDE 62
Query: 48 ANDVYE---LNFGHRPYQGNIQNLTAAEL-DMYGAHA---------------------WL 82
D + + ++ ++ L +L DMY A+ +
Sbjct: 63 MRDYLKNINIPLDYKTFENRADKLGGQKLKDMYIANKLNKNFGDIRSIDPKKLPDFDFFT 122
Query: 83 LSPPCQPYTRQGLQK---QSSDARAFSFLKILELIPHTVKPPHMLF--VENVVGFETSDT 137
S PCQ + G Q S R+ + ++I H KP +++ V+N+VG
Sbjct: 123 YSFPCQDISVAGYQNGLVADSGTRSSLLWECCKIIEHK-KPKYLMMENVKNLVGKNHKVN 181
Query: 138 HAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKP 179
K + L + Y IL+ FG+P +R R FC++ P
Sbjct: 182 FNKFLLYLESLGYTNYWDILNARDFGIPQNRERVFCISILNP 223
>sp|P31033|MTM4_NEIGO Modification methylase NgoMIV OS=Neisseria gonorrhoeae GN=ngoMIVM
PE=3 SV=1
Length = 312
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 66/169 (39%), Gaps = 21/169 (12%)
Query: 16 LEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP----YQGNIQNLTAA 71
LE +G GG L +A S V +I A LN RP +G+++
Sbjct: 6 LEICAGAGGQALGLERAGFSH--VALIEIEPSACQTLRLN---RPDWNVIEGDVRLFQGE 60
Query: 72 ELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVG 131
D G PC P+++ G Q D R F + + L T P + +ENV G
Sbjct: 61 GYD--GIDLLAGGVPCPPFSKAGKQLGKDDERDL-FPEAIRLAKET--DPKAIMLENVRG 115
Query: 132 -----FETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLA 175
FE H + E A YL Q +L +GV RPR +A
Sbjct: 116 LLDPKFENYRNH--ITEQFAKLGYLGQWKLLYAADYGVSQLRPRVLFVA 162
>sp|P0AED9|DCM_ECOLI DNA-cytosine methyltransferase OS=Escherichia coli (strain K12)
GN=dcm PE=1 SV=1
Length = 472
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 31/167 (18%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP----YQGNIQN 67
A+R ++ ++GIGG+R + Q V + N A Y+ N P + +I++
Sbjct: 86 AFRFIDLFAGIGGIRRGF--ESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRD 143
Query: 68 LT-----------AAE--LDMYGAHAWLLSP-PCQPYTRQGLQKQSSDARAFS------- 106
+T AAE H LL+ PCQP++ G+ K++S RA
Sbjct: 144 ITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQG 203
Query: 107 --FLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYL 151
F ++ +I + P M +ENV ++ D I+ D L
Sbjct: 204 TLFFDVVRII--DARRPAMFVLENVKNLKSHDQGKTFRIIMQTLDEL 248
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 286 GSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKAS---SLKEQHL-RYFTP 341
G +VYP++ + T S Y G L+ G+ L +QH R TP
Sbjct: 345 GFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTP 404
Query: 342 REVANLHSF--PGDFQFPHHLSLRQRYALLGNS 372
RE A L F PG+ +F +S Q Y GNS
Sbjct: 405 RECARLMGFEAPGEAKFRIPVSDTQAYRQFGNS 437
>sp|P0AEE0|DCM_ECO57 DNA-cytosine methyltransferase OS=Escherichia coli O157:H7 GN=dcm
PE=3 SV=1
Length = 472
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 31/167 (18%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP----YQGNIQN 67
A+R ++ ++GIGG+R + Q V + N A Y+ N P + +I++
Sbjct: 86 AFRFIDLFAGIGGIRRGF--ESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRD 143
Query: 68 LT-----------AAE--LDMYGAHAWLLSP-PCQPYTRQGLQKQSSDARAFS------- 106
+T AAE H LL+ PCQP++ G+ K++S RA
Sbjct: 144 ITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQG 203
Query: 107 --FLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYL 151
F ++ +I + P M +ENV ++ D I+ D L
Sbjct: 204 TLFFDVVRII--DARRPAMFVLENVKNLKSHDQGKTFRIIMQTLDEL 248
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 286 GSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKAS---SLKEQHL-RYFTP 341
G +VYP++ + T S Y G L+ G+ L +QH R TP
Sbjct: 345 GFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTP 404
Query: 342 REVANLHSF--PGDFQFPHHLSLRQRYALLGNS 372
RE A L F PG+ +F +S Q Y GNS
Sbjct: 405 RECARLMGFEAPGEAKFRIPVSDTQAYRQFGNS 437
>sp|P09795|MTS1_SALIN Modification methylase SinI OS=Salmonella infantis GN=sinIM PE=3
SV=1
Length = 461
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 35/195 (17%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAE- 72
+ L F+SG G+ + +A + + A +I+ A D N + G+I++ T +
Sbjct: 76 KALSFFSGAMGLDLGIEQAGF--ETLLASEIDKAARDTILSNRPNMALIGDIRDYTTEDI 133
Query: 73 LDMYGAHAW------LLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFV 126
L + G + + PPCQ ++ G + D R F+K L+ + ++P +++ +
Sbjct: 134 LKLAGVSSGNEIDLIMGGPPCQAFSTAGKRLGLEDERGNVFIKYLD-VALDIRPKYIV-I 191
Query: 127 ENVVGFETSDTHAK------------------------MIEILANSDYLTQEFILSPLQF 162
ENV G ++ + +I I+ ++ Y + + F
Sbjct: 192 ENVRGLLSAPMKHRPHNERGEGLPPLKSEEQPGGVLHYIIRIIKSAGYSVSFNLYNSANF 251
Query: 163 GVPYSRPRYFCLAKR 177
GVP R R + R
Sbjct: 252 GVPQIRERVIIICSR 266
>sp|P36216|MTC1_PBCVI Modification methylase CviJI OS=Paramecium bursaria Chlorella virus
IL3A GN=CVIJIM PE=3 SV=1
Length = 367
Score = 39.3 bits (90), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 14/171 (8%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAA 71
++R LE ++GI G+ + L VE IN+ A + F ++ T +
Sbjct: 2 SFRTLELFAGIAGISHGLRGISTPVAFVE---INEDAQKFLKTKFSDASVFNDVTKFTKS 58
Query: 72 E----LDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVE 127
+ +DM A PC ++ G + + F ++ + P ++F+E
Sbjct: 59 DFPEDIDMITA-----GFPCTGFSIAGSRTGFEHKESGLFADVVRITEEY--KPKIVFLE 111
Query: 128 NVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRK 178
N + +++ + Y + G + R R+FCLA RK
Sbjct: 112 NSHMLSHTYNLDVVVKKMDEIGYFCKWVTCRASIIGAHHQRHRWFCLAIRK 162
>sp|Q24K09|DNMT1_BOVIN DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus GN=DNMT1 PE=2 SV=1
Length = 1611
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 24/182 (13%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQV---------VEAFDINDKANDVYELNFG---HRPY 61
R L+ +SG GG+ +A +S + +AF +N+ + V+ +
Sbjct: 1137 RTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVFTEDCNVLLKLVM 1196
Query: 62 QGNIQNLTAAELDMYGAHAWLL-SPPCQPYTRQGLQKQSSDARAFSFLK---ILELIPHT 117
G + N +L G L PPCQ ++ G+ + +S R +S K ++ + +
Sbjct: 1197 AGEVTNSRGQKLPQKGDVEMLCGGPPCQGFS--GMNRFNS--RTYSKFKNSLVVSFLSYC 1252
Query: 118 --VKPPHMLF--VENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFC 173
+P + L V N V F+ S + L Y +L Q+GV +R R
Sbjct: 1253 DYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAII 1312
Query: 174 LA 175
LA
Sbjct: 1313 LA 1314
>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana
GN=CMT2 PE=2 SV=3
Length = 1295
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 337 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 381
R T RE A L FP FQF ++++RY +GN+++++V L
Sbjct: 1215 RVLTIRESARLQGFPDYFQFCG--TIKERYCQIGNAVAVSVSRAL 1257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,827,672
Number of Sequences: 539616
Number of extensions: 6164830
Number of successful extensions: 12574
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 12493
Number of HSP's gapped (non-prelim): 85
length of query: 390
length of database: 191,569,459
effective HSP length: 119
effective length of query: 271
effective length of database: 127,355,155
effective search space: 34513247005
effective search space used: 34513247005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)