Query 016377
Match_columns 390
No_of_seqs 147 out of 1713
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:18:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00145 DNA_methylase: C-5 cy 100.0 3.1E-67 6.7E-72 508.6 19.9 164 13-182 1-167 (335)
2 TIGR00675 dcm DNA-methyltransf 100.0 1.7E-66 3.7E-71 498.6 23.6 300 15-385 1-315 (315)
3 COG0270 Dcm Site-specific DNA 100.0 7.5E-65 1.6E-69 490.2 23.3 316 11-388 2-323 (328)
4 cd00315 Cyt_C5_DNA_methylase C 100.0 2.2E-64 4.7E-69 475.5 25.3 272 13-387 1-275 (275)
5 PRK10458 DNA cytosine methylas 100.0 3.3E-62 7.2E-67 485.0 26.6 323 8-387 84-454 (467)
6 KOG0919 C-5 cytosine-specific 100.0 1.2E-51 2.7E-56 362.1 10.5 320 11-387 2-338 (338)
7 TIGR03704 PrmC_rel_meth putati 98.3 7.3E-06 1.6E-10 76.5 11.5 137 12-156 87-239 (251)
8 PF09445 Methyltransf_15: RNA 98.1 6.2E-06 1.3E-10 71.2 6.7 79 14-95 2-87 (163)
9 PF13659 Methyltransf_26: Meth 98.1 4.1E-06 8.8E-11 68.2 5.3 75 13-90 2-83 (117)
10 COG2520 Predicted methyltransf 98.0 3.2E-05 7E-10 74.4 10.7 123 10-154 187-317 (341)
11 COG2263 Predicted RNA methylas 98.0 1.1E-05 2.3E-10 70.5 6.0 114 11-155 45-166 (198)
12 KOG3420 Predicted RNA methylas 98.0 5.6E-06 1.2E-10 68.8 4.1 72 10-86 47-123 (185)
13 TIGR02085 meth_trns_rumB 23S r 98.0 4.3E-05 9.4E-10 75.5 10.9 123 13-168 235-364 (374)
14 PF03602 Cons_hypoth95: Conser 97.9 8.5E-06 1.9E-10 72.2 4.0 75 10-86 41-123 (183)
15 PRK11783 rlmL 23S rRNA m(2)G24 97.9 0.0001 2.2E-09 78.6 12.8 150 12-175 539-700 (702)
16 TIGR00479 rumA 23S rRNA (uraci 97.8 0.00012 2.5E-09 73.9 10.9 127 13-168 294-428 (431)
17 TIGR00537 hemK_rel_arch HemK-r 97.8 0.00019 4.2E-09 63.2 10.7 138 13-168 21-172 (179)
18 TIGR00095 RNA methyltransferas 97.8 3.5E-05 7.7E-10 68.7 5.0 74 11-86 49-130 (189)
19 COG2265 TrmA SAM-dependent met 97.7 0.00012 2.5E-09 73.3 9.1 118 11-155 293-418 (432)
20 PRK10909 rsmD 16S rRNA m(2)G96 97.7 3.8E-05 8.3E-10 69.0 4.9 72 11-86 53-130 (199)
21 PF02475 Met_10: Met-10+ like- 97.7 4.6E-05 1E-09 68.3 4.6 71 11-86 101-178 (200)
22 COG1092 Predicted SAM-dependen 97.5 0.00069 1.5E-08 66.7 11.0 135 12-154 218-363 (393)
23 PRK03522 rumB 23S rRNA methylu 97.5 0.00023 4.9E-09 68.7 7.3 71 12-87 174-250 (315)
24 COG0742 N6-adenine-specific me 97.5 0.00014 3E-09 64.0 5.1 76 10-88 42-125 (187)
25 PRK05031 tRNA (uracil-5-)-meth 97.5 0.00075 1.6E-08 66.4 10.8 125 13-169 208-352 (362)
26 PHA03412 putative methyltransf 97.5 0.00016 3.5E-09 66.1 5.6 75 11-89 49-126 (241)
27 PRK15128 23S rRNA m(5)C1962 me 97.5 0.00047 1E-08 68.5 9.3 74 12-87 221-303 (396)
28 PF05958 tRNA_U5-meth_tr: tRNA 97.5 0.00022 4.8E-09 69.8 6.5 70 14-86 199-287 (352)
29 PRK13168 rumA 23S rRNA m(5)U19 97.5 0.00098 2.1E-08 67.5 11.3 128 12-168 298-432 (443)
30 PRK14967 putative methyltransf 97.4 0.0019 4E-08 59.1 12.0 72 12-89 37-113 (223)
31 smart00650 rADc Ribosomal RNA 97.3 0.00059 1.3E-08 59.6 6.7 68 13-86 15-86 (169)
32 PHA03411 putative methyltransf 97.3 0.0007 1.5E-08 63.3 7.0 75 11-91 64-140 (279)
33 PF01170 UPF0020: Putative RNA 97.2 0.00055 1.2E-08 60.5 5.5 104 11-124 28-146 (179)
34 TIGR00446 nop2p NOL1/NOP2/sun 97.1 0.00074 1.6E-08 63.5 5.9 82 11-95 71-158 (264)
35 PRK10901 16S rRNA methyltransf 97.1 0.0014 3.1E-08 65.9 8.3 82 11-94 244-330 (427)
36 PF05175 MTS: Methyltransferas 97.1 0.00065 1.4E-08 59.4 5.1 71 11-86 31-107 (170)
37 TIGR03534 RF_mod_PrmC protein- 97.1 0.0085 1.8E-07 55.4 12.3 77 12-93 88-170 (251)
38 PRK09328 N5-glutamine S-adenos 97.1 0.016 3.5E-07 54.4 14.3 147 10-173 107-272 (275)
39 PF13847 Methyltransf_31: Meth 97.1 0.0013 2.8E-08 56.2 6.1 104 10-129 2-112 (152)
40 PF10672 Methyltrans_SAM: S-ad 97.0 0.002 4.4E-08 60.9 7.1 139 11-162 123-271 (286)
41 PRK00121 trmB tRNA (guanine-N( 96.9 0.0061 1.3E-07 54.9 9.7 131 11-153 40-177 (202)
42 cd02440 AdoMet_MTases S-adenos 96.9 0.0053 1.2E-07 47.2 8.2 73 14-90 1-79 (107)
43 COG4123 Predicted O-methyltran 96.9 0.0013 2.8E-08 60.6 5.3 131 12-155 45-192 (248)
44 TIGR01177 conserved hypothetic 96.9 0.0038 8.3E-08 60.6 8.8 75 11-91 182-262 (329)
45 PRK14904 16S rRNA methyltransf 96.9 0.0017 3.8E-08 65.7 6.5 81 11-95 250-336 (445)
46 PRK04338 N(2),N(2)-dimethylgua 96.9 0.0014 3E-08 64.8 5.4 70 12-86 58-134 (382)
47 TIGR02143 trmA_only tRNA (urac 96.9 0.0018 3.8E-08 63.6 5.9 124 14-168 200-342 (353)
48 PRK14901 16S rRNA methyltransf 96.8 0.002 4.3E-08 65.0 6.2 85 11-95 252-343 (434)
49 PRK14902 16S rRNA methyltransf 96.8 0.0021 4.5E-08 65.1 6.2 79 12-94 251-337 (444)
50 TIGR00308 TRM1 tRNA(guanine-26 96.8 0.0015 3.3E-08 64.3 4.8 71 12-86 45-123 (374)
51 PRK14968 putative methyltransf 96.8 0.02 4.4E-07 50.2 11.4 72 11-89 23-102 (188)
52 COG2890 HemK Methylase of poly 96.7 0.0028 6E-08 60.1 5.8 128 14-150 113-255 (280)
53 KOG1227 Putative methyltransfe 96.6 0.00088 1.9E-08 62.5 1.8 44 13-58 196-240 (351)
54 TIGR03533 L3_gln_methyl protei 96.6 0.0045 9.8E-08 58.8 6.7 129 12-152 122-269 (284)
55 PRK00377 cbiT cobalt-precorrin 96.6 0.042 9.2E-07 49.1 12.6 123 11-158 40-171 (198)
56 KOG2730 Methylase [General fun 96.6 0.0028 6.1E-08 56.7 4.6 102 13-117 96-206 (263)
57 PF12847 Methyltransf_18: Meth 96.6 0.0056 1.2E-07 49.0 6.1 68 12-85 2-78 (112)
58 PTZ00146 fibrillarin; Provisio 96.6 0.11 2.5E-06 49.2 15.5 146 12-179 133-288 (293)
59 TIGR02752 MenG_heptapren 2-hep 96.6 0.021 4.5E-07 52.2 10.5 101 12-129 46-153 (231)
60 PF06325 PrmA: Ribosomal prote 96.6 0.0027 5.8E-08 60.5 4.6 120 12-157 162-283 (295)
61 PRK14903 16S rRNA methyltransf 96.6 0.005 1.1E-07 62.1 6.8 82 11-95 237-325 (431)
62 PRK00517 prmA ribosomal protei 96.6 0.021 4.6E-07 53.1 10.6 119 10-155 118-236 (250)
63 PRK04266 fibrillarin; Provisio 96.5 0.17 3.7E-06 46.4 15.6 143 11-176 72-224 (226)
64 PRK14896 ksgA 16S ribosomal RN 96.5 0.0062 1.4E-07 57.0 6.3 68 11-86 29-100 (258)
65 PRK11805 N5-glutamine S-adenos 96.4 0.0061 1.3E-07 58.6 6.2 74 13-91 135-215 (307)
66 PRK00274 ksgA 16S ribosomal RN 96.4 0.0085 1.8E-07 56.6 6.9 70 11-86 42-114 (272)
67 COG2264 PrmA Ribosomal protein 96.3 0.011 2.5E-07 56.0 6.7 122 11-156 162-287 (300)
68 TIGR00406 prmA ribosomal prote 96.2 0.057 1.2E-06 51.4 11.6 73 11-85 159-233 (288)
69 PLN02585 magnesium protoporphy 96.2 0.07 1.5E-06 51.4 12.1 45 11-58 144-188 (315)
70 PLN02336 phosphoethanolamine N 96.1 0.039 8.5E-07 56.3 10.5 149 12-177 38-211 (475)
71 TIGR00536 hemK_fam HemK family 96.1 0.012 2.6E-07 55.9 6.3 75 13-92 116-197 (284)
72 TIGR00755 ksgA dimethyladenosi 96.1 0.016 3.4E-07 54.1 6.9 71 11-86 29-103 (253)
73 PRK14966 unknown domain/N5-glu 96.1 0.012 2.6E-07 58.5 6.2 71 13-86 253-328 (423)
74 PRK08287 cobalt-precorrin-6Y C 96.1 0.19 4.1E-06 44.4 13.4 113 11-151 31-150 (187)
75 PRK03612 spermidine synthase; 96.0 0.099 2.1E-06 54.1 12.9 148 12-178 298-460 (521)
76 PRK01581 speE spermidine synth 96.0 0.22 4.8E-06 48.7 14.4 151 12-181 151-317 (374)
77 PRK09489 rsmC 16S ribosomal RN 96.0 0.014 3.1E-07 56.9 6.0 101 14-128 199-304 (342)
78 TIGR00563 rsmB ribosomal RNA s 95.9 0.015 3.3E-07 58.5 6.2 83 11-96 238-328 (426)
79 COG0144 Sun tRNA and rRNA cyto 95.9 0.027 5.9E-07 55.2 7.7 91 7-97 152-249 (355)
80 TIGR00417 speE spermidine synt 95.9 0.25 5.5E-06 46.5 14.0 151 8-177 70-232 (270)
81 TIGR00091 tRNA (guanine-N(7)-) 95.8 0.066 1.4E-06 47.8 9.3 127 12-149 17-149 (194)
82 TIGR02081 metW methionine bios 95.8 0.14 3E-06 45.5 11.5 140 12-172 14-181 (194)
83 PF13649 Methyltransf_25: Meth 95.8 0.031 6.7E-07 44.0 6.3 89 15-115 1-98 (101)
84 PLN02490 MPBQ/MSBQ methyltrans 95.7 0.24 5.2E-06 48.2 13.5 144 11-173 113-272 (340)
85 COG2227 UbiG 2-polyprenyl-3-me 95.7 0.025 5.3E-07 51.7 6.1 70 10-82 58-129 (243)
86 PTZ00338 dimethyladenosine tra 95.6 0.021 4.6E-07 54.4 5.7 67 12-86 37-110 (294)
87 TIGR03587 Pse_Me-ase pseudamin 95.6 0.039 8.5E-07 49.7 7.0 67 12-84 44-112 (204)
88 COG1041 Predicted DNA modifica 95.6 0.1 2.3E-06 50.3 10.2 135 14-175 200-344 (347)
89 COG2521 Predicted archaeal met 95.6 0.037 8.1E-07 50.2 6.6 135 11-158 134-278 (287)
90 PF00398 RrnaAD: Ribosomal RNA 95.4 0.04 8.7E-07 51.7 6.8 73 11-86 30-106 (262)
91 PRK10258 biotin biosynthesis p 95.4 0.042 9.1E-07 51.0 6.9 70 11-86 42-112 (251)
92 PRK11933 yebU rRNA (cytosine-C 95.4 0.034 7.5E-07 56.4 6.6 84 9-95 111-201 (470)
93 PF08241 Methyltransf_11: Meth 95.4 0.11 2.4E-06 39.6 8.1 86 16-116 1-89 (95)
94 PRK04148 hypothetical protein; 95.3 0.091 2E-06 43.9 7.8 69 12-86 17-86 (134)
95 PRK15001 SAM-dependent 23S rib 95.3 0.039 8.6E-07 54.4 6.6 102 13-128 230-341 (378)
96 KOG2904 Predicted methyltransf 95.3 0.026 5.7E-07 52.3 4.7 70 14-87 151-232 (328)
97 TIGR00080 pimt protein-L-isoas 95.3 0.044 9.4E-07 49.7 6.2 74 11-87 77-156 (215)
98 PRK11207 tellurite resistance 95.2 0.088 1.9E-06 47.1 7.9 68 11-85 30-103 (197)
99 PLN02244 tocopherol O-methyltr 95.1 0.35 7.5E-06 47.2 12.5 100 10-128 117-224 (340)
100 PRK05785 hypothetical protein; 95.1 0.12 2.5E-06 47.4 8.7 93 12-127 52-145 (226)
101 TIGR03840 TMPT_Se_Te thiopurin 95.0 0.1 2.3E-06 47.3 8.0 40 11-53 34-73 (213)
102 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.0 0.042 9.1E-07 52.2 5.4 87 9-96 83-175 (283)
103 TIGR00477 tehB tellurite resis 94.9 0.12 2.7E-06 46.1 8.1 68 12-86 31-103 (195)
104 TIGR01934 MenG_MenH_UbiE ubiqu 94.9 0.36 7.9E-06 43.4 11.4 103 11-129 39-145 (223)
105 COG2226 UbiE Methylase involve 94.9 0.21 4.5E-06 46.1 9.6 103 11-131 51-160 (238)
106 COG3963 Phospholipid N-methylt 94.9 0.093 2E-06 45.2 6.6 84 9-92 46-132 (194)
107 KOG3191 Predicted N6-DNA-methy 94.9 0.6 1.3E-05 40.9 11.6 134 13-155 45-191 (209)
108 TIGR02021 BchM-ChlM magnesium 94.9 0.065 1.4E-06 48.6 6.2 67 10-85 54-127 (219)
109 COG0030 KsgA Dimethyladenosine 94.8 0.078 1.7E-06 49.4 6.4 70 12-86 31-104 (259)
110 TIGR00478 tly hemolysin TlyA f 94.8 0.085 1.8E-06 48.4 6.7 61 11-73 75-137 (228)
111 PLN02396 hexaprenyldihydroxybe 94.7 0.071 1.5E-06 51.6 6.4 68 11-84 131-205 (322)
112 PRK11036 putative S-adenosyl-L 94.7 0.059 1.3E-06 50.2 5.6 71 11-86 44-121 (255)
113 PRK15451 tRNA cmo(5)U34 methyl 94.7 0.26 5.6E-06 45.7 9.8 104 11-131 56-168 (247)
114 PRK06202 hypothetical protein; 94.6 0.3 6.5E-06 44.7 10.0 73 10-86 59-138 (232)
115 PRK01544 bifunctional N5-gluta 94.5 0.087 1.9E-06 54.2 6.8 131 12-154 139-290 (506)
116 COG3897 Predicted methyltransf 94.5 0.026 5.6E-07 49.9 2.4 76 10-88 78-153 (218)
117 PRK00216 ubiE ubiquinone/menaq 94.5 0.59 1.3E-05 42.5 11.7 71 11-84 51-128 (239)
118 PLN02781 Probable caffeoyl-CoA 94.5 0.19 4E-06 46.4 8.2 72 12-84 69-151 (234)
119 PRK11727 23S rRNA mA1618 methy 94.4 0.1 2.2E-06 50.4 6.6 76 10-86 113-198 (321)
120 PRK13255 thiopurine S-methyltr 94.4 0.13 2.8E-06 46.9 7.0 39 12-53 38-76 (218)
121 PRK00811 spermidine synthase; 94.4 0.65 1.4E-05 44.0 12.1 146 12-178 77-238 (283)
122 TIGR02987 met_A_Alw26 type II 94.4 0.057 1.2E-06 55.9 5.3 79 11-91 31-126 (524)
123 PRK00107 gidB 16S rRNA methylt 94.4 1.1 2.4E-05 39.8 12.6 117 12-156 46-168 (187)
124 PRK10742 putative methyltransf 94.4 0.056 1.2E-06 49.9 4.5 74 8-86 85-173 (250)
125 PLN02672 methionine S-methyltr 94.3 0.069 1.5E-06 59.2 5.8 161 13-182 120-340 (1082)
126 TIGR02072 BioC biotin biosynth 94.3 0.34 7.3E-06 44.0 9.7 74 11-88 34-109 (240)
127 TIGR00138 gidB 16S rRNA methyl 94.2 0.079 1.7E-06 46.8 5.1 68 12-84 43-116 (181)
128 TIGR02469 CbiT precorrin-6Y C5 94.2 0.15 3.2E-06 41.2 6.4 69 13-84 21-95 (124)
129 COG2242 CobL Precorrin-6B meth 94.0 0.79 1.7E-05 40.4 10.7 113 13-151 36-154 (187)
130 PRK12335 tellurite resistance 94.0 0.19 4.2E-06 47.7 7.6 67 13-86 122-193 (287)
131 PRK11783 rlmL 23S rRNA m(2)G24 93.9 0.21 4.5E-06 53.7 8.4 83 38-127 258-347 (702)
132 PRK11188 rrmJ 23S rRNA methylt 93.9 0.097 2.1E-06 47.4 5.1 67 13-85 53-125 (209)
133 PLN02233 ubiquinone biosynthes 93.9 0.46 1E-05 44.5 9.7 103 11-130 73-185 (261)
134 PRK01683 trans-aconitate 2-met 93.7 0.24 5.3E-06 46.0 7.5 73 11-88 31-104 (258)
135 PRK06922 hypothetical protein; 93.4 0.39 8.5E-06 50.4 9.0 112 12-129 419-539 (677)
136 PF02384 N6_Mtase: N-6 DNA Met 93.3 0.13 2.8E-06 49.4 5.1 81 9-90 44-138 (311)
137 PF02005 TRM: N2,N2-dimethylgu 93.3 0.11 2.4E-06 51.3 4.7 45 11-57 49-95 (377)
138 PF05185 PRMT5: PRMT5 arginine 93.2 0.16 3.4E-06 51.4 5.8 115 12-143 187-316 (448)
139 PTZ00098 phosphoethanolamine N 93.1 0.55 1.2E-05 44.0 9.0 103 11-130 52-159 (263)
140 PF01209 Ubie_methyltran: ubiE 93.1 0.32 6.8E-06 44.8 7.2 105 10-131 46-157 (233)
141 TIGR00740 methyltransferase, p 93.1 0.41 8.8E-06 44.0 7.9 104 11-130 53-164 (239)
142 PRK05134 bifunctional 3-demeth 93.1 0.23 5.1E-06 45.3 6.3 69 11-84 48-121 (233)
143 PRK07580 Mg-protoporphyrin IX 92.9 0.29 6.3E-06 44.5 6.6 68 10-86 62-136 (230)
144 PRK13944 protein-L-isoaspartat 92.8 0.31 6.7E-06 43.9 6.5 72 12-87 73-152 (205)
145 PRK00312 pcm protein-L-isoaspa 92.7 0.33 7.2E-06 43.7 6.6 73 10-88 77-155 (212)
146 PRK07402 precorrin-6B methylas 92.7 0.23 5E-06 44.2 5.5 55 12-67 41-101 (196)
147 COG2813 RsmC 16S RNA G1207 met 92.4 1.4 3E-05 41.9 10.4 112 4-134 153-271 (300)
148 PF03848 TehB: Tellurite resis 92.3 0.2 4.4E-06 44.6 4.5 67 11-84 30-101 (192)
149 smart00828 PKS_MT Methyltransf 91.9 1.9 4.2E-05 38.9 10.7 131 14-162 2-149 (224)
150 PLN02366 spermidine synthase 91.8 6.9 0.00015 37.6 14.8 150 12-178 92-254 (308)
151 TIGR00438 rrmJ cell division p 91.3 0.35 7.6E-06 42.7 5.0 68 12-85 33-106 (188)
152 PF13489 Methyltransf_23: Meth 91.0 0.53 1.2E-05 39.7 5.7 40 9-51 20-59 (161)
153 COG0116 Predicted N6-adenine-s 90.9 0.81 1.8E-05 44.9 7.3 71 38-117 256-333 (381)
154 PRK13942 protein-L-isoaspartat 90.9 0.62 1.3E-05 42.2 6.2 70 11-84 76-152 (212)
155 PF05724 TPMT: Thiopurine S-me 90.8 2.3 4.9E-05 38.7 9.9 148 10-174 36-215 (218)
156 KOG1271 Methyltransferases [Ge 90.7 1.5 3.2E-05 38.6 7.9 126 14-155 70-203 (227)
157 PRK11873 arsM arsenite S-adeno 90.6 4.3 9.4E-05 37.9 12.0 102 11-129 77-185 (272)
158 KOG0820 Ribosomal RNA adenine 90.5 0.68 1.5E-05 43.2 6.0 71 13-91 60-137 (315)
159 COG4076 Predicted RNA methylas 90.1 0.37 7.9E-06 42.4 3.8 61 14-82 35-101 (252)
160 PRK11088 rrmA 23S rRNA methylt 90.1 0.74 1.6E-05 43.3 6.3 69 12-83 86-157 (272)
161 TIGR01983 UbiG ubiquinone bios 89.9 0.83 1.8E-05 41.3 6.3 69 11-84 45-119 (224)
162 PRK14121 tRNA (guanine-N(7)-)- 89.7 2.5 5.4E-05 41.9 9.7 124 12-149 123-252 (390)
163 PRK14103 trans-aconitate 2-met 89.4 0.79 1.7E-05 42.6 5.8 72 11-88 29-100 (255)
164 PLN02823 spermine synthase 89.2 13 0.00028 36.2 14.2 148 12-178 104-268 (336)
165 KOG1500 Protein arginine N-met 89.0 1.3 2.7E-05 42.6 6.7 70 9-84 175-250 (517)
166 PF07021 MetW: Methionine bios 88.8 1.1 2.3E-05 39.8 5.8 91 12-117 14-105 (193)
167 PLN02476 O-methyltransferase 88.6 2.2 4.8E-05 40.3 8.2 101 11-129 118-229 (278)
168 PRK15068 tRNA mo(5)U34 methylt 88.0 1.3 2.9E-05 42.8 6.6 67 11-83 122-195 (322)
169 PF02086 MethyltransfD12: D12 87.9 0.34 7.4E-06 44.9 2.3 42 11-55 20-61 (260)
170 PF10294 Methyltransf_16: Puta 87.8 1.4 3E-05 38.5 6.0 76 8-86 42-128 (173)
171 PRK13943 protein-L-isoaspartat 87.8 1.5 3.2E-05 42.4 6.7 71 11-84 80-156 (322)
172 KOG1122 tRNA and rRNA cytosine 87.7 1.5 3.2E-05 43.5 6.4 86 5-95 235-330 (460)
173 KOG2078 tRNA modification enzy 87.6 0.34 7.3E-06 47.8 2.1 43 13-58 251-293 (495)
174 PRK11524 putative methyltransf 87.6 0.93 2E-05 43.0 5.1 46 9-57 206-251 (284)
175 KOG2187 tRNA uracil-5-methyltr 87.5 0.62 1.3E-05 47.1 3.9 42 13-57 385-426 (534)
176 PLN02336 phosphoethanolamine N 87.3 1.7 3.7E-05 44.3 7.2 98 11-127 266-369 (475)
177 PRK08317 hypothetical protein; 86.9 2.7 5.8E-05 37.9 7.6 71 11-84 19-94 (241)
178 PRK13699 putative methylase; P 86.7 1.2 2.5E-05 40.9 5.1 46 9-57 161-206 (227)
179 PF03291 Pox_MCEL: mRNA cappin 86.7 1.4 3.1E-05 42.7 5.9 44 11-56 62-105 (331)
180 PF05148 Methyltransf_8: Hypot 86.3 9.8 0.00021 34.4 10.4 122 8-162 69-190 (219)
181 TIGR00452 methyltransferase, p 86.3 2 4.4E-05 41.4 6.7 69 10-84 120-195 (314)
182 PRK00050 16S rRNA m(4)C1402 me 86.1 2.9 6.3E-05 39.9 7.5 76 12-88 20-101 (296)
183 PF05401 NodS: Nodulation prot 85.4 1.7 3.7E-05 38.7 5.2 66 13-85 45-114 (201)
184 PF01564 Spermine_synth: Sperm 84.6 6.1 0.00013 36.6 8.8 142 11-165 76-228 (246)
185 KOG1499 Protein arginine N-met 84.3 2 4.2E-05 41.6 5.4 65 13-82 62-132 (346)
186 KOG1270 Methyltransferases [Co 84.0 1.3 2.9E-05 41.1 4.0 41 12-55 90-130 (282)
187 COG4106 Tam Trans-aconitate me 83.6 9.3 0.0002 34.7 8.9 115 12-147 31-147 (257)
188 PRK13256 thiopurine S-methyltr 83.4 3.4 7.4E-05 37.8 6.4 41 12-55 44-84 (226)
189 TIGR03438 probable methyltrans 82.9 4.1 8.9E-05 38.9 7.1 58 11-68 63-127 (301)
190 TIGR01444 fkbM_fam methyltrans 82.3 2.7 5.9E-05 34.9 5.1 43 14-57 1-43 (143)
191 PRK11705 cyclopropane fatty ac 81.8 3.9 8.5E-05 40.6 6.7 64 11-83 167-234 (383)
192 PRK04457 spermidine synthase; 81.3 3.6 7.9E-05 38.5 6.0 120 12-148 67-194 (262)
193 KOG2361 Predicted methyltransf 80.4 2.1 4.7E-05 39.3 3.8 69 13-84 73-151 (264)
194 COG4262 Predicted spermidine s 80.2 24 0.00052 34.6 10.9 151 13-182 291-456 (508)
195 PF02390 Methyltransf_4: Putat 79.9 8.3 0.00018 34.4 7.5 128 14-152 20-155 (195)
196 COG1867 TRM1 N2,N2-dimethylgua 79.4 2.3 5E-05 41.5 3.9 43 12-57 53-97 (380)
197 PF01728 FtsJ: FtsJ-like methy 77.3 3.3 7.1E-05 36.2 4.1 122 10-146 22-157 (181)
198 KOG1540 Ubiquinone biosynthesi 75.9 26 0.00055 32.8 9.4 101 12-128 101-215 (296)
199 PF01135 PCMT: Protein-L-isoas 75.1 6.6 0.00014 35.5 5.5 75 10-88 71-152 (209)
200 PHA01634 hypothetical protein 73.9 7.2 0.00016 32.3 4.8 49 11-61 28-76 (156)
201 PF08704 GCD14: tRNA methyltra 71.1 8.1 0.00017 35.9 5.2 116 11-150 40-164 (247)
202 KOG2198 tRNA cytosine-5-methyl 71.0 10 0.00022 37.1 6.0 86 10-95 154-254 (375)
203 TIGR02716 C20_methyl_CrtF C-20 70.5 50 0.0011 31.4 10.7 100 12-130 150-257 (306)
204 PF09243 Rsm22: Mitochondrial 68.4 71 0.0015 30.0 11.1 125 11-152 33-163 (274)
205 PRK11760 putative 23S rRNA C24 67.5 12 0.00027 36.4 5.7 73 10-90 210-283 (357)
206 PLN03075 nicotianamine synthas 67.2 14 0.0003 35.3 5.9 71 11-84 123-202 (296)
207 PF13679 Methyltransf_32: Meth 67.0 14 0.00031 30.8 5.5 77 9-92 23-114 (141)
208 PF13651 EcoRI_methylase: Aden 66.4 14 0.00031 35.5 5.7 53 77-152 135-191 (336)
209 COG2519 GCD14 tRNA(1-methylade 65.1 16 0.00036 33.8 5.8 112 11-150 94-213 (256)
210 COG1189 Predicted rRNA methyla 64.3 11 0.00023 34.7 4.3 70 11-83 79-150 (245)
211 PF01596 Methyltransf_3: O-met 63.1 17 0.00038 32.6 5.6 100 12-130 46-157 (205)
212 PF02353 CMAS: Mycolic acid cy 61.9 15 0.00033 34.6 5.1 64 10-82 61-132 (273)
213 PF11599 AviRa: RRNA methyltra 61.8 14 0.0003 33.5 4.5 48 9-57 49-98 (246)
214 COG3392 Adenine-specific DNA m 61.4 9 0.0002 35.7 3.3 44 11-57 27-73 (330)
215 KOG1253 tRNA methyltransferase 57.9 5.6 0.00012 40.3 1.5 52 5-58 103-156 (525)
216 COG2230 Cfa Cyclopropane fatty 56.9 25 0.00054 33.3 5.6 45 10-57 71-116 (283)
217 KOG1663 O-methyltransferase [S 56.6 61 0.0013 29.7 7.8 96 15-129 79-184 (237)
218 smart00138 MeTrc Methyltransfe 56.6 36 0.00078 31.8 6.7 46 10-55 98-151 (264)
219 COG4747 ACT domain-containing 56.4 19 0.00042 29.2 4.0 38 123-165 7-45 (142)
220 PRK01544 bifunctional N5-gluta 56.3 81 0.0018 32.6 9.8 127 11-149 347-479 (506)
221 PF05891 Methyltransf_PK: AdoM 55.5 1.6E+02 0.0035 26.7 10.8 138 9-167 53-208 (218)
222 KOG2360 Proliferation-associat 53.4 23 0.0005 34.9 4.8 86 4-95 206-302 (413)
223 PF11968 DUF3321: Putative met 49.3 58 0.0013 29.6 6.4 123 11-155 51-179 (219)
224 PF03721 UDPG_MGDP_dh_N: UDP-g 49.2 1E+02 0.0022 27.1 8.1 97 21-131 7-123 (185)
225 PLN02589 caffeoyl-CoA O-methyl 48.6 84 0.0018 29.2 7.7 99 12-129 80-191 (247)
226 KOG3045 Predicted RNA methylas 48.5 1.2E+02 0.0026 28.5 8.4 117 11-162 180-296 (325)
227 KOG2015 NEDD8-activating compl 47.1 38 0.00083 32.6 5.1 64 18-85 44-137 (422)
228 PRK13562 acetolactate synthase 46.1 37 0.0008 25.9 4.0 45 123-176 6-51 (84)
229 COG0293 FtsJ 23S rRNA methylas 45.6 28 0.0006 31.4 3.8 144 12-177 46-200 (205)
230 COG0863 DNA modification methy 44.8 44 0.00095 31.4 5.4 48 8-58 219-266 (302)
231 COG0421 SpeE Spermidine syntha 43.5 61 0.0013 30.7 6.0 76 5-84 71-156 (282)
232 PF08242 Methyltransf_12: Meth 42.5 3.4 7.4E-05 31.9 -2.2 73 16-90 1-79 (99)
233 PRK08178 acetolactate synthase 42.2 28 0.0006 27.3 2.9 30 123-157 12-41 (96)
234 KOG2671 Putative RNA methylase 40.5 14 0.0003 35.9 1.2 68 14-86 211-293 (421)
235 PF04816 DUF633: Family of unk 40.4 2.7E+02 0.0059 24.9 11.0 115 15-156 1-123 (205)
236 PF03807 F420_oxidored: NADP o 39.3 51 0.0011 25.0 4.1 67 19-91 4-75 (96)
237 PRK06737 acetolactate synthase 38.9 58 0.0012 24.3 4.1 31 123-158 6-36 (76)
238 TIGR00571 dam DNA adenine meth 36.1 40 0.00086 31.6 3.5 39 14-57 28-66 (266)
239 PRK03659 glutathione-regulated 35.2 1.4E+02 0.003 31.6 7.8 63 18-86 404-473 (601)
240 PF03078 ATHILA: ATHILA ORF-1 34.8 45 0.00098 33.8 3.8 44 334-377 138-184 (458)
241 COG1743 Adenine-specific DNA m 34.7 40 0.00087 36.3 3.5 46 8-56 87-132 (875)
242 KOG1975 mRNA cap methyltransfe 34.3 48 0.001 32.1 3.7 105 14-131 120-239 (389)
243 PRK11152 ilvM acetolactate syn 34.1 48 0.001 24.7 3.0 32 123-159 7-38 (76)
244 cd01076 NAD_bind_1_Glu_DH NAD( 33.2 1.7E+02 0.0036 26.7 7.1 71 11-88 30-114 (227)
245 PF05219 DREV: DREV methyltran 33.0 1.4E+02 0.0029 28.1 6.3 42 10-54 93-134 (265)
246 PRK09496 trkA potassium transp 32.3 1.2E+02 0.0027 30.3 6.7 64 18-86 235-306 (453)
247 PF07091 FmrO: Ribosomal RNA m 31.6 47 0.001 30.8 3.1 44 12-56 106-149 (251)
248 KOG3010 Methyltransferase [Gen 31.6 71 0.0015 29.6 4.2 48 7-58 30-77 (261)
249 KOG1099 SAM-dependent methyltr 31.4 35 0.00075 31.4 2.1 63 14-82 44-120 (294)
250 PF01488 Shikimate_DH: Shikima 31.0 1.4E+02 0.0031 24.4 5.8 67 19-90 17-88 (135)
251 COG4221 Short-chain alcohol de 30.5 84 0.0018 29.1 4.5 61 20-83 16-87 (246)
252 COG0220 Predicted S-adenosylme 30.4 1.4E+02 0.003 27.3 6.0 80 13-93 50-135 (227)
253 COG4122 Predicted O-methyltran 28.7 1.8E+02 0.004 26.4 6.4 102 10-130 58-168 (219)
254 KOG1207 Diacetyl reductase/L-x 28.1 1.3E+02 0.0029 26.5 5.1 54 12-68 9-65 (245)
255 cd01075 NAD_bind_Leu_Phe_Val_D 27.6 1.4E+02 0.0031 26.5 5.5 59 18-89 32-94 (200)
256 PF02254 TrkA_N: TrkA-N domain 27.3 3E+02 0.0064 21.4 7.6 64 18-86 2-71 (116)
257 PF08123 DOT1: Histone methyla 26.6 1.3E+02 0.0028 27.0 5.1 42 12-55 43-85 (205)
258 KOG2793 Putative N2,N2-dimethy 25.5 78 0.0017 29.4 3.4 15 11-25 86-100 (248)
259 PF00891 Methyltransf_2: O-met 25.4 1.8E+02 0.004 26.3 6.0 100 13-131 102-203 (241)
260 cd01488 Uba3_RUB Ubiquitin act 24.8 2.3E+02 0.005 27.0 6.6 62 19-84 4-95 (291)
261 PF10727 Rossmann-like: Rossma 24.5 1.5E+02 0.0033 24.3 4.7 69 9-86 7-77 (127)
262 TIGR00006 S-adenosyl-methyltra 24.3 1.5E+02 0.0032 28.5 5.2 70 13-84 22-99 (305)
263 PF04445 SAM_MT: Putative SAM- 24.2 1E+02 0.0022 28.4 3.9 73 8-85 72-159 (234)
264 PF01408 GFO_IDH_MocA: Oxidore 24.0 3.5E+02 0.0075 21.0 9.5 105 19-149 5-113 (120)
265 PF01210 NAD_Gly3P_dh_N: NAD-d 23.7 2.3E+02 0.0051 23.8 5.9 72 15-91 2-83 (157)
266 PF03686 UPF0146: Uncharacteri 23.4 88 0.0019 25.8 3.0 57 14-82 16-75 (127)
267 TIGR02356 adenyl_thiF thiazole 23.3 2.5E+02 0.0055 24.9 6.3 25 19-45 26-54 (202)
268 PLN02477 glutamate dehydrogena 22.7 1.8E+02 0.0038 29.2 5.6 63 21-88 213-289 (410)
269 PRK08223 hypothetical protein; 22.7 2.4E+02 0.0052 26.8 6.2 27 18-46 31-61 (287)
270 PF09001 DUF1890: Domain of un 22.6 1.3E+02 0.0028 25.2 3.8 55 25-83 19-75 (139)
271 TIGR01082 murC UDP-N-acetylmur 22.3 1.4E+02 0.003 30.1 4.9 61 18-88 3-69 (448)
272 KOG4169 15-hydroxyprostaglandi 22.2 89 0.0019 28.8 3.0 61 19-84 11-90 (261)
273 PRK10904 DNA adenine methylase 22.0 52 0.0011 30.9 1.6 39 13-56 29-67 (271)
274 COG2518 Pcm Protein-L-isoaspar 21.8 2.3E+02 0.0051 25.6 5.6 45 10-57 71-115 (209)
275 COG0569 TrkA K+ transport syst 21.4 1.9E+02 0.0041 26.3 5.2 52 29-85 19-74 (225)
276 KOG1661 Protein-L-isoaspartate 21.3 2.1E+02 0.0046 26.0 5.2 48 10-57 81-129 (237)
277 KOG2915 tRNA(1-methyladenosine 21.1 2.1E+02 0.0046 27.1 5.3 74 12-86 106-186 (314)
278 KOG1200 Mitochondrial/plastidi 21.0 1.5E+02 0.0033 26.7 4.2 43 24-69 29-75 (256)
279 PF08003 Methyltransf_9: Prote 20.4 2.1E+02 0.0045 27.6 5.2 41 10-52 114-154 (315)
280 KOG1541 Predicted protein carb 20.3 4.6E+02 0.0099 24.2 7.1 154 12-179 51-205 (270)
281 PTZ00357 methyltransferase; Pr 20.3 2.4E+02 0.0052 30.5 6.0 57 13-70 702-777 (1072)
282 PF01842 ACT: ACT domain; Int 20.1 1.6E+02 0.0034 20.1 3.5 33 124-161 5-37 (66)
No 1
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=100.00 E-value=3.1e-67 Score=508.56 Aligned_cols=164 Identities=30% Similarity=0.540 Sum_probs=149.0
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCchhhh
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQPYTR 92 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~fS~ 92 (390)
++++|||||+||+++||++|||+ +++|+|+|+.|++||++||| .++.+||++++...+++ ++|+|+||||||+||.
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag~~--~~~a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ 76 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAGFE--VVWAVEIDPDACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSI 76 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTTEE--EEEEEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TTTST
T ss_pred CcEEEEccCccHHHHHHHhcCcE--EEEEeecCHHHHHhhhhccc-ccccccccccccccccc-cceEEEeccCCceEec
Confidence 58999999999999999999966 99999999999999999999 88899999999999996 6999999999999999
Q ss_pred ccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccCh---HHHHHHHHHHHhCCceeEEEEeCCCCcCCCccCc
Q 016377 93 QGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS---DTHAKMIEILANSDYLTQEFILSPLQFGVPYSRP 169 (390)
Q Consensus 93 ~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~---~~~~~~~~~l~~~GY~~~~~~l~a~~~G~pq~R~ 169 (390)
+|++++.+|+|+.||++++++++++ +|++|+||||+|+++. ..++.+++.|+++||++.+.+|||++||+||+|+
T Consensus 77 ag~~~~~~d~r~~L~~~~~~~v~~~--~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna~~yGvPQ~R~ 154 (335)
T PF00145_consen 77 AGKRKGFDDPRNSLFFEFLRIVKEL--KPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLNAADYGVPQNRE 154 (335)
T ss_dssp TSTHHCCCCHTTSHHHHHHHHHHHH--S-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGTSSBE-E
T ss_pred cccccccccccchhhHHHHHHHhhc--cceEEEecccceeeccccccccccccccccccceeehhccccHhhCCCCCcee
Confidence 9998899999999999999999999 8999999999999997 4799999999999999999999999999999999
Q ss_pred EEEEEEEeCCCcc
Q 016377 170 RYFCLAKRKPLSF 182 (390)
Q Consensus 170 R~~~i~~~~~~~~ 182 (390)
|+|+||++++...
T Consensus 155 R~fivg~r~~~~~ 167 (335)
T PF00145_consen 155 RVFIVGIRKDLPL 167 (335)
T ss_dssp EEEEEEEEGGG--
T ss_pred eEEEEEECCCCCc
Confidence 9999999998643
No 2
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.7e-66 Score=498.64 Aligned_cols=300 Identities=26% Similarity=0.423 Sum_probs=219.0
Q ss_pred EEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCchhhhcc
Q 016377 15 VLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQPYTRQG 94 (390)
Q Consensus 15 ~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~fS~~g 94 (390)
|+|||||+||+++||++|||+ +++|+|+|+.|++||++|||+.++.+||.+++..++++ +|+|+||||||+||.+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~--~~~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~--~dvl~gg~PCq~fS~ag 76 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK--CVFASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPD--FDILLGGFPCQPFSIAG 76 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe--EEEEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCC--cCEEEecCCCcccchhc
Confidence 689999999999999999977 99999999999999999999988889999999887775 99999999999999999
Q ss_pred CCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccCh---HHHHHHHHHHHhCCceeEEEEeCCCCcCCCccCcEE
Q 016377 95 LQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS---DTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRY 171 (390)
Q Consensus 95 ~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~---~~~~~~~~~l~~~GY~~~~~~l~a~~~G~pq~R~R~ 171 (390)
++++.+|+|+.|+++++++++.+ +|++|+||||+++++. ..++.++..|+++||++.+.+|||++||+||+|+|+
T Consensus 77 ~~~~~~d~r~~L~~~~~r~i~~~--~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~ 154 (315)
T TIGR00675 77 KRKGFEDTRGTLFFEIVRILKEK--KPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERI 154 (315)
T ss_pred ccCCCCCchhhHHHHHHHHHhhc--CCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEE
Confidence 99988999999999999999999 9999999999999875 378999999999999999999999999999999999
Q ss_pred EEEEEe-CCCcccccccccccccCCCCCCCCCCccccccCCCCCCccccccccCCchhhhhhccCCCCcccccccccccC
Q 016377 172 FCLAKR-KPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTG 250 (390)
Q Consensus 172 ~~i~~~-~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~g 250 (390)
|+||++ ++... .+.+|.|++... ...+.|+++....... .+..
T Consensus 155 f~ia~r~~~~~~--------~~~~p~~~~~~~---------------------~~~l~d~~~~~~~~~~-----~~~~-- 198 (315)
T TIGR00675 155 YIVGFRDFDDKL--------NFEFPKPIYVAK---------------------KKRIGDLLDLSVDLEE-----KYYL-- 198 (315)
T ss_pred EEEEEeCCCcCc--------CCCCCCCccccc---------------------ccchHHhcccccCcCC-----cEEe--
Confidence 999999 44221 245566554100 1124454432111000 0000
Q ss_pred cccccccCCCcccchhcccccccccccchhHHhhhcccccccCCCCcccccccCCcEEeecCCccceeecCCC-------
Q 016377 251 TAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPK------- 323 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~p~~~~~~~~~~~y~r~~~~~~~~t~~~~~~------- 323 (390)
..... ..+. .....+...+. .+. .+...|.+..++.++.+++....
T Consensus 199 ---------~~~~~--------~~~~----~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 251 (315)
T TIGR00675 199 ---------SEEKK--------NGLL----LLLENMRKKEG-TGE-----QIGSFYNRESKSSIIRTLSARGYTFVKGGK 251 (315)
T ss_pred ---------CHHHH--------HHHH----HHhhccccccc-ccc-----ccceeeccCCccceeeeeeccccccCCCCc
Confidence 00000 0000 00000000000 000 01111222222223333322100
Q ss_pred ----CCCCccccccCccccccHHHHHHhCCCCCCeecCCCCCHHHHHHHhCCccchHHHHHHHHHH
Q 016377 324 ----NKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYL 385 (390)
Q Consensus 324 ----~~~~~~~ihp~~~R~LT~rE~aRLQgFPd~y~f~g~~s~~~~y~qiGNAVp~~v~~~I~~~l 385 (390)
.......+||.+.|.||+||+||||||||+|+|.+ +.+++|+||||||||+++++|+++|
T Consensus 252 t~~~~~~~~~~~hp~~~R~lT~RE~aRLQ~FPd~f~f~~--s~~~~~~qiGNAVPp~la~~I~~~i 315 (315)
T TIGR00675 252 SVLIVPHKSTVVHPGRIRRLTPRECARLQGFPDDFKFPV--SDSQLYKQAGNAVVVPVIEAIAKQI 315 (315)
T ss_pred ceeeccccceeccCCceeeCCHHHHHHHcCCCcccEeCC--CHHHHHhhhCCcccHHHHHHHHhhC
Confidence 00011227999999999999999999999999998 8999999999999999999999864
No 3
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.5e-65 Score=490.17 Aligned_cols=316 Identities=25% Similarity=0.390 Sum_probs=236.0
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC-CCCeecCccccchhhhcccCccEEEeCCCCch
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG-HRPYQGNIQNLTAAELDMYGAHAWLLSPPCQP 89 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~-~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~ 89 (390)
++++++|||||+||+++||++|||+ +++|+|+|+.|++||++||+ ..++..||.++..+.+...++|+|+||||||+
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf~--~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~ 79 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGFE--IVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQD 79 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCCe--EEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcc
Confidence 5789999999999999999999977 99999999999999999999 57788999999998887546999999999999
Q ss_pred hhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccCh--HHHHHHHHHHHhCCceeEEEEeCCCCcCCCcc
Q 016377 90 YTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS--DTHAKMIEILANSDYLTQEFILSPLQFGVPYS 167 (390)
Q Consensus 90 fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~--~~~~~~~~~l~~~GY~~~~~~l~a~~~G~pq~ 167 (390)
||.+|++++.+|+|+.||++++|+|..+ +|++||||||+|+++. +.++.|++.|+++||.+.+.+|||++||+||+
T Consensus 80 FS~aG~r~~~~D~R~~L~~~~~r~I~~~--~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ 157 (328)
T COG0270 80 FSIAGKRRGYDDPRGSLFLEFIRLIEQL--RPKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQS 157 (328)
T ss_pred hhhcCcccCCcCccceeeHHHHHHHHhh--CCCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCC
Confidence 9999999999999999999999999999 9999999999999986 58999999999999999999999999999999
Q ss_pred CcEEEEEEEeCC-CcccccccccccccCCCCCCCCCCccccccCCCCCCccccccccCCchhhhhhc--cCCCCcccccc
Q 016377 168 RPRYFCLAKRKP-LSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEF--SNSGDQVNTET 244 (390)
Q Consensus 168 R~R~~~i~~~~~-~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~--~~~~~~~~~~~ 244 (390)
|+|+|+||++++ ..+.. ..+.+...... .++.+.+.. ...........
T Consensus 158 ReRvfiig~~~~~~~~~~--------~~~~~~~~~~~---------------------~~~~~~i~~~~~~~~~~~~~~~ 208 (328)
T COG0270 158 RERVFIVGFRRDNIDLDP--------NVLPPLPLGRK---------------------KTLKEALKNNDLPETDELYLSR 208 (328)
T ss_pred ccEEEEEEecCccccccc--------cccCccccccc---------------------cchhhhhhhccCcchhhhhccc
Confidence 999999999985 22111 00011110000 001111110 00000000000
Q ss_pred cccccCcccccccCCCcccchhcccccccccccchhHHhhhcccccccCCCCcccccccCCcEEeecCCccceeecCCCC
Q 016377 245 GFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKN 324 (390)
Q Consensus 245 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~p~~~~~~~~~~~y~r~~~~~~~~t~~~~~~~ 324 (390)
.. ..+.... .........+ ...++.... ..+.......|.|+.+..+++|+...
T Consensus 209 ~~-------------~~~~~~~--~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~rl~~~~~~~t~~~~--- 262 (328)
T COG0270 209 DL-------------RNHEAKS--LPKNKGERLP---SLRWGEALT-----LSRRYKGKGSYIRLHPDKPAPTVRGG--- 262 (328)
T ss_pred cc-------------ccccccc--Cchhhhcccc---ccccccccc-----cccccCCCceeEeCCCCCCCceeecC---
Confidence 00 0000000 0000000000 000000000 00000115678999999999998832
Q ss_pred CCCccccccCccccccHHHHHHhCCCCCCeecCCCCCHHHHHHHhCCccchHHHHHHHHHHHhc
Q 016377 325 KGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFAQ 388 (390)
Q Consensus 325 ~~~~~~ihp~~~R~LT~rE~aRLQgFPd~y~f~g~~s~~~~y~qiGNAVp~~v~~~I~~~l~~~ 388 (390)
.....+||.+.|.||+||+||||||||+|.|.| |.+++|+||||||||+++++|++.|.+.
T Consensus 263 -~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~g--s~~~~~~qiGnsVp~~l~~~ia~~i~~~ 323 (328)
T COG0270 263 -GNERFIHPLEDRELTVREAARLQGFPDDFVFPG--SKTDQYRQIGNSVPPLLAEAIAKAILKK 323 (328)
T ss_pred -CCcccCCCCcCCCCCHHHHHHhcCCCCceEEec--cchhhhhhccCcCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999 8999999999999999999999999865
No 4
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=100.00 E-value=2.2e-64 Score=475.48 Aligned_cols=272 Identities=32% Similarity=0.544 Sum_probs=218.0
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCchhhh
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQPYTR 92 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~fS~ 92 (390)
++++|||||+||+++||+++|++ +++|+|+|+.|+++|++||++.++++||++++..++.. ++|+|+||||||+||.
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~-~~D~l~~gpPCq~fS~ 77 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIP-DIDLLTGGFPCQPFSI 77 (275)
T ss_pred CcEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCC-CCCEEEeCCCChhhhH
Confidence 58999999999999999999976 99999999999999999999988999999999876432 5999999999999999
Q ss_pred ccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccC---hHHHHHHHHHHHhCCceeEEEEeCCCCcCCCccCc
Q 016377 93 QGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFET---SDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRP 169 (390)
Q Consensus 93 ~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~---~~~~~~~~~~l~~~GY~~~~~~l~a~~~G~pq~R~ 169 (390)
+|++++.+|+|+.|+++++++++.+ +|++|+||||+|+++ +..++.+++.|+++||++.+.+|||++||+||+|+
T Consensus 78 ag~~~~~~d~r~~L~~~~~~~i~~~--~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~ 155 (275)
T cd00315 78 AGKRKGFEDTRGTLFFEIIRILKEK--KPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRE 155 (275)
T ss_pred HhhcCCCCCchHHHHHHHHHHHHhc--CCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCc
Confidence 9998899999999999999999999 999999999999988 56899999999999999999999999999999999
Q ss_pred EEEEEEEeCCCcccccccccccccCCCCCCCCCCccccccCCCCCCccccccccCCchhhhhhccCCCCccccccccccc
Q 016377 170 RYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLST 249 (390)
Q Consensus 170 R~~~i~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~ 249 (390)
|+|+||++++..+++. .+.|.+.. ...+++|++....
T Consensus 156 R~~~ia~~~~~~~~~~--------~~~p~~~~---------------------~~~t~~d~l~~~~-------------- 192 (275)
T cd00315 156 RVFIIGIRKDLILNFF--------SPFPKPSE---------------------KKKTLKDILRIRD-------------- 192 (275)
T ss_pred EEEEEEEeCCCCcccc--------ccCCCCCC---------------------CCCcHHHHHhhhc--------------
Confidence 9999999998643221 10122110 0113555552100
Q ss_pred CcccccccCCCcccchhcccccccccccchhHHhhhcccccccCCCCcccccccCCcEEeecCCccceeecCCCCCCCcc
Q 016377 250 GTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKAS 329 (390)
Q Consensus 250 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~p~~~~~~~~~~~y~r~~~~~~~~t~~~~~~~~~~~~ 329 (390)
++. .+.|.+..|.+ +.+..... .+ ..
T Consensus 193 --------------------------------------------~~~-~~~ti~~~~~~---~~~~~~~~-~~-----~~ 218 (275)
T cd00315 193 --------------------------------------------PDE-PSPTLTASYGK---GTGSVHPT-AP-----DM 218 (275)
T ss_pred --------------------------------------------CCC-CccceecCCCC---CccccccC-cc-----cc
Confidence 000 11122222222 11111000 00 11
Q ss_pred ccccCccccccHHHHHHhCCCCCCeecCCCCCHHHHHHHhCCccchHHHHHHHHHHHh
Q 016377 330 SLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 387 (390)
Q Consensus 330 ~ihp~~~R~LT~rE~aRLQgFPd~y~f~g~~s~~~~y~qiGNAVp~~v~~~I~~~l~~ 387 (390)
..||.+.|.||+||+||||||||+|.|.|. +.+++|+||||||||+++++|+++|.+
T Consensus 219 ~~~~~~~R~lT~rE~arlqgFPd~f~f~g~-~~~~~~~qiGNAVp~~~~~~I~~~i~~ 275 (275)
T cd00315 219 IGKESNIRRLTPRECARLQGFPDDFEFPGK-SVTQAYRQIGNSVPVPVAEAIAKAIKE 275 (275)
T ss_pred cccCCCCCCCCHHHHHHHcCCCCCcEEcCC-CHHHHHHhhcCCcCHHHHHHHHHHHhC
Confidence 468899999999999999999999999875 789999999999999999999999864
No 5
>PRK10458 DNA cytosine methylase; Provisional
Probab=100.00 E-value=3.3e-62 Score=484.95 Aligned_cols=323 Identities=22% Similarity=0.335 Sum_probs=231.2
Q ss_pred CCCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC---C-CCeecCccccchhh-----------
Q 016377 8 NDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG---H-RPYQGNIQNLTAAE----------- 72 (390)
Q Consensus 8 ~~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~---~-~~~~~di~~~~~~~----------- 72 (390)
....+++++|||||+||+++||+.+|++ +|+++|+|+.|++||++||+ + ..+.+||.+++..+
T Consensus 84 ~~~~~~~~iDLFsGiGGl~lGfe~aG~~--~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~ 161 (467)
T PRK10458 84 HPHYAFRFIDLFAGIGGIRRGFEAIGGQ--CVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAE 161 (467)
T ss_pred CcCCCceEEEeCcCccHHHHHHHHcCCE--EEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhh
Confidence 3455899999999999999999999977 99999999999999999994 3 35678999997532
Q ss_pred -----hcccCccEEEeCCCCchhhhccCCC--------CC-CChhhhhHHHHHHhcccccCCCcEEEEeccccccChH--
Q 016377 73 -----LDMYGAHAWLLSPPCQPYTRQGLQK--------QS-SDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSD-- 136 (390)
Q Consensus 73 -----~~~~~~D~l~~g~PCq~fS~~g~~~--------~~-~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~-- 136 (390)
++ ++|+|+||||||+||.+|+++ ++ +|+|+.||++++|+|++. +|++||||||+|+++..
T Consensus 162 ~~~~~~p--~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~--kPk~fvlENV~gl~s~~~g 237 (467)
T PRK10458 162 HIRQHIP--DHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAK--RPAIFVLENVKNLKSHDKG 237 (467)
T ss_pred hhhccCC--CCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHh--CCCEEEEeCcHhhhccccc
Confidence 23 599999999999999999654 33 377999999999999998 99999999999998764
Q ss_pred -HHHHHHHHHHhCCceeE---------EEEeCCCCcCCCccCcEEEEEEEeCCCcccccccccccccCCCCCCCCCCccc
Q 016377 137 -THAKMIEILANSDYLTQ---------EFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTV 206 (390)
Q Consensus 137 -~~~~~~~~l~~~GY~~~---------~~~l~a~~~G~pq~R~R~~~i~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~ 206 (390)
+|+.+++.|+++||.+. |+||||.+| +||+|+|+|+||+|++..++. .|.+|.+...
T Consensus 238 ~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlna~~f-VPQ~R~RvfiVg~r~~~~~~~------~f~~~~~~~~------ 304 (467)
T PRK10458 238 KTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHF-LPQHRERIVLVGFRRDLNLKA------DFTLRDISEC------ 304 (467)
T ss_pred HHHHHHHHHHHHcCCeEEeccccCcccceEeehhhC-CCccCcEEEEEEEeCCccccc------Cccccccccc------
Confidence 89999999999999995 699999999 999999999999999865421 1222221110
Q ss_pred cccCCCCCCccccccccCCchhhhhhccCCCCcccccccccccCcccccccCCCcccchhcccccccccccchhHHhhhc
Q 016377 207 ITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWG 286 (390)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (390)
.+ ....++.++|+..... ..++. ...+. .+..+.. .......|
T Consensus 305 ------~p-------~~~~~l~diL~~~~~~------ky~ls-~~~~~----------------~l~~~~~-k~~~~g~g 347 (467)
T PRK10458 305 ------YP-------AQRPTLAELLDPVVDA------KYILT-PVLWK----------------YLYRYAK-KHQAKGNG 347 (467)
T ss_pred ------CC-------CCCCCHHHhcCCCCCc------ceeeC-HHHHH----------------HHHHHHh-hccccCCC
Confidence 00 0012467777642110 00000 00000 0000000 00011224
Q ss_pred ccccccCCCCcccccccCCcEEeecCCccceeecC-CCCCCCcccccc----CccccccHHHHHHhCCC--CCCeecCCC
Q 016377 287 SAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQ-PKNKGKASSLKE----QHLRYFTPREVANLHSF--PGDFQFPHH 359 (390)
Q Consensus 287 ~~~d~~~p~~~~~~~~~~~y~r~~~~~~~~t~~~~-~~~~~~~~~ihp----~~~R~LT~rE~aRLQgF--Pd~y~f~g~ 359 (390)
..++++.|....+.+.+.++ |+.++....++... ....+...+.|| ..+|+|||||||||||| ||+|.|...
T Consensus 348 ~~~~i~~~~~~~~~~~t~~~-ry~k~gs~~~i~~~~~~~~~~~~~~~~~~~~~~~RrLTprE~aRLqGF~~pd~~~F~~~ 426 (467)
T PRK10458 348 FGYGLVYPNNPQSVTRTLSA-RYYKDGSEILIDRGWDMALGEKDFDDPENQQHRPRRLTPRECARLMGFEAPGEAKFRIP 426 (467)
T ss_pred cceeeeecCCCCCccccccc-ccccCCCceeeecccccccccccccccccccCCcccCCHHHHHHhCCCCCCccccccCC
Confidence 45566656555555555553 77777444443332 112223344555 35899999999999999 677777666
Q ss_pred CCHHHHHHHhCCccchHHHHHHHHHHHh
Q 016377 360 LSLRQRYALLGNSLSIAVVAPLLQYLFA 387 (390)
Q Consensus 360 ~s~~~~y~qiGNAVp~~v~~~I~~~l~~ 387 (390)
+|.+++|+|+||||||+|+++|++.|..
T Consensus 427 vSdtq~Ykq~GNSV~Vpvv~aIa~~L~~ 454 (467)
T PRK10458 427 VSDTQAYRQFGNSVVVPVFAAVAKLLEP 454 (467)
T ss_pred CCHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 7999999999999999999999999865
No 6
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=100.00 E-value=1.2e-51 Score=362.08 Aligned_cols=320 Identities=42% Similarity=0.712 Sum_probs=265.8
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-CCeecCccccchhhhcccCccEEEeCCCCch
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTAAELDMYGAHAWLLSPPCQP 89 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~ 89 (390)
++++|++|++|.||+..+|+.|.+...+|.|+|+++-|.++|+.|+.. -+-..||..++.+++...++|+|..|||||+
T Consensus 2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt~kefd~l~~~m~lMSPpCQP 81 (338)
T KOG0919|consen 2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLTVKEFDKLQANMLLMSPPCQP 81 (338)
T ss_pred CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccchhhccccceeeHhhhhhcccceEeeCCCCCc
Confidence 589999999999999999999999888999999999999999999444 4456799999999998888999999999999
Q ss_pred hhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeEEEEeCCCCcCCCccCc
Q 016377 90 YTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRP 169 (390)
Q Consensus 90 fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~a~~~G~pq~R~ 169 (390)
|++.|.++...|+|+.-|.+++.++-+++.-|+|++||||+||.++++.+.+++.|+++||++...+|....||+|.+|-
T Consensus 82 fTRiG~q~D~~D~Rs~aflhil~~lP~~q~LPeYIL~ENVkGFE~S~ar~~~i~~lencGf~~~EfiLsPtqfniPNsR~ 161 (338)
T KOG0919|consen 82 FTRIGLQRDTEDKRSDAFLHILGLLPECQELPEYILMENVKGFESSQARNQFIESLENCGFHWREFILSPTQFNIPNSRY 161 (338)
T ss_pred hhhhcccccccCchhHHHHHHHhhhhhhhhhhHHHHHhhcccchhhhHHHHHHHHHHhcCchhhheeccccccCCCCcch
Confidence 99999999999999999999999998875459999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCcccccccccccccCCCCCCCCCCccccccCCCCCCcccccccc---CCchhhhhhccCCCCcccccccc
Q 016377 170 RYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLES---CDPVERFLEFSNSGDQVNTETGF 246 (390)
Q Consensus 170 R~~~i~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~l~~~~~~~~~~~~~~~ 246 (390)
|+|+||-.. .+|+++ ++..|+ +..... ++... .+.+.|+++.+.+
T Consensus 162 Ryy~iArl~-~~F~~~--G~~s~d---------~~~qFs----------eiaqk~g~Vk~i~d~lE~~~d---------- 209 (338)
T KOG0919|consen 162 RYYCIARLG-ADFPFA--GGKSWD---------EMPQFS----------EIAQKQGLVKQIADILEENVD---------- 209 (338)
T ss_pred heeehhhhC-CCCCCC--CCcccc---------cccchH----------HHHHhcchHHHHHHHHHhcCC----------
Confidence 999998654 444321 111111 000000 00000 1135566654221
Q ss_pred cccCcccccccCCCcccchhcccccccccccchhHHhhhcccccccCCCCcccccccCCcEEeecCCccceeecCCC---
Q 016377 247 LSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPK--- 323 (390)
Q Consensus 247 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~p~~~~~~~~~~~y~r~~~~~~~~t~~~~~~--- 323 (390)
...|.+|.+.+.+|+..+|++.|++.++.|||+.|+.+..|.|+...+....
T Consensus 210 -------------------------~s~ylvp~~vL~k~~l~~DIv~P~~srs~CFTkGYthy~eGtGSilq~~~~i~~e 264 (338)
T KOG0919|consen 210 -------------------------PSDYLVPDDVLTKRVLVMDIVHPAQSRSMCFTKGYTHYTEGTGSILQLVKEIDTE 264 (338)
T ss_pred -------------------------HHHccCCHHHHHHhHhheeecccccccceEeecCccceeecchHHHHHHhhhccc
Confidence 2348999999999999999999999999999999999999999987765521
Q ss_pred --CCCCc--------cccccCccccccHHHHHHhCCCCCCeecCCCCCHHHHHHHhCCccchHHHHHHHHHHHh
Q 016377 324 --NKGKA--------SSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 387 (390)
Q Consensus 324 --~~~~~--------~~ihp~~~R~LT~rE~aRLQgFPd~y~f~g~~s~~~~y~qiGNAVp~~v~~~I~~~l~~ 387 (390)
..+.. ..+|-.+.|.+||||.|||||||++|.|+.+++.++.|+++|||+.|.|+..+.+-|.+
T Consensus 265 N~~~s~~~~~~~~~~~~l~~l~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNVkVV~~LIklL~e 338 (338)
T KOG0919|consen 265 NQDASKSEKILQQRLDLLHQLRLRYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINVKVVGELIKLLTE 338 (338)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccceeHHHHHHHhcC
Confidence 11111 34577899999999999999999999999999999999999999999999998877653
No 7
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.29 E-value=7.3e-06 Score=76.46 Aligned_cols=137 Identities=17% Similarity=0.187 Sum_probs=87.0
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC---CCeecCccccchhhhcccCccEEEeCCCCc
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH---RPYQGNIQNLTAAELDMYGAHAWLLSPPCQ 88 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~---~~~~~di~~~~~~~~~~~~~D~l~~g~PCq 88 (390)
..+++|||||.|.+++.+....- ...+.++|+++.|++..+.|... .++++|+.+.....+.+ .+|+++..|||.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~-~fDlVv~NPPy~ 164 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRG-RVDILAANAPYV 164 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCC-CEeEEEECCCCC
Confidence 45899999999999999875421 11578999999999999998643 45778887643333322 599999999999
Q ss_pred hhhhccCCCC---CCChhh---------hhHHHHHHhcccccCCC-cEEEEeccccccChHHHHHHHHHHHhCCceeEEE
Q 016377 89 PYTRQGLQKQ---SSDARA---------FSFLKILELIPHTVKPP-HMLFVENVVGFETSDTHAKMIEILANSDYLTQEF 155 (390)
Q Consensus 89 ~fS~~g~~~~---~~d~r~---------~l~~~~~~~i~~~~~~P-~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~ 155 (390)
+.+....... ..+++. ..+..+++-+..+. +| -++++|--. .....++..|++.|+.....
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L-~~gG~l~l~~~~-----~~~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL-APGGHLLVETSE-----RQAPLAVEAFARAGLIARVA 238 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc-CCCCEEEEEECc-----chHHHHHHHHHHCCCCceee
Confidence 8765432110 011111 12344443333321 33 456666332 23567888888888876655
Q ss_pred E
Q 016377 156 I 156 (390)
Q Consensus 156 ~ 156 (390)
.
T Consensus 239 ~ 239 (251)
T TIGR03704 239 S 239 (251)
T ss_pred E
Confidence 4
No 8
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.13 E-value=6.2e-06 Score=71.21 Aligned_cols=79 Identities=20% Similarity=0.182 Sum_probs=54.2
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC-----C--CCeecCccccchhhhcccCccEEEeCCC
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG-----H--RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~-----~--~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
+++|+|||+||-+..|.+.+ + .|.|+|+|+..++..++|.. + ..+++|..++....-...-+|+++.|||
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-D--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHhC-C--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 58999999999999999984 4 79999999999999999953 1 3478898886543211101699999999
Q ss_pred CchhhhccC
Q 016377 87 CQPYTRQGL 95 (390)
Q Consensus 87 Cq~fS~~g~ 95 (390)
.-|-|-...
T Consensus 79 WGGp~Y~~~ 87 (163)
T PF09445_consen 79 WGGPSYSKK 87 (163)
T ss_dssp BSSGGGGGS
T ss_pred CCCcccccc
Confidence 988776654
No 9
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.12 E-value=4.1e-06 Score=68.20 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=58.6
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEeCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~g~ 85 (390)
.+|+|+|||.|.+.+.+.+.|- ..+.++|+|+.+++.-+.|++. .++++|+.++.. .+....+|++++.|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~--~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGA--ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-PLPDGKFDLIVTNP 78 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCT--CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-TCTTT-EEEEEE--
T ss_pred CEEEEcCcchHHHHHHHHHHCC--CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-hccCceeEEEEECC
Confidence 5899999999999999999993 3799999999999999999864 346788877752 23344699999999
Q ss_pred CCchh
Q 016377 86 PCQPY 90 (390)
Q Consensus 86 PCq~f 90 (390)
|.-+.
T Consensus 79 P~~~~ 83 (117)
T PF13659_consen 79 PYGPR 83 (117)
T ss_dssp STTSB
T ss_pred CCccc
Confidence 97433
No 10
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=3.2e-05 Score=74.43 Aligned_cols=123 Identities=19% Similarity=0.237 Sum_probs=93.3
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
...-+|+|+|||+|-+|+-....|-- .|+|+|+|++|++.++.|..- .++++|.+++.... . .+|-++
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-~--~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-G--VADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-c--cCCEEE
Confidence 34678999999999999999999974 499999999999999999742 36899999987653 2 499999
Q ss_pred eCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChH-HHHHHHHHHHhCCceeEE
Q 016377 83 LSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSD-THAKMIEILANSDYLTQE 154 (390)
Q Consensus 83 ~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~-~~~~~~~~l~~~GY~~~~ 154 (390)
.|.|= .....+...+++++. ..-+-.-|+|+.-.... .++.+.....+.||++..
T Consensus 262 m~~p~--------------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v 317 (341)
T COG2520 262 MGLPK--------------SAHEFLPLALELLKD---GGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEV 317 (341)
T ss_pred eCCCC--------------cchhhHHHHHHHhhc---CcEEEEEeccchhhcccchHHHHHHHHhhccCcceE
Confidence 88881 112345556677776 57788889998764322 567777777788896543
No 11
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=1.1e-05 Score=70.53 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=79.6
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-----CCeecCccccchhhhcccCccEEEeCC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-----RPYQGNIQNLTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-----~~~~~di~~~~~~~~~~~~~D~l~~g~ 85 (390)
..-+|+||-||+|.+++|....|-. .|.++|+|+.|.++.+.|-.. ..+.+||+++.. .+|.++..|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~------~~dtvimNP 116 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRG------KFDTVIMNP 116 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCC------ccceEEECC
Confidence 3346999999999999999999966 999999999999999999874 346778877643 388999999
Q ss_pred CCchhhhccC-CCCCCChhhhh--HHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeEEE
Q 016377 86 PCQPYTRQGL-QKQSSDARAFS--FLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEF 155 (390)
Q Consensus 86 PCq~fS~~g~-~~~~~d~r~~l--~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~ 155 (390)
|- |- +++ -+|.-| .++..+.+..+ - +....+.+.+....+|+.+...
T Consensus 117 PF------G~~~rh--aDr~Fl~~Ale~s~vVYsi---------H------~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 117 PF------GSQRRH--ADRPFLLKALEISDVVYSI---------H------KAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred CC------cccccc--CCHHHHHHHHHhhheEEEe---------e------ccccHHHHHHHHHhcCCeEEEE
Confidence 93 32 222 233211 12222322222 1 2225666777888999887543
No 12
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=5.6e-06 Score=68.82 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=61.1
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-----CCeecCccccchhhhcccCccEEEeC
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-----RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-----~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
.+..+++||.||+|.++.|+...+-+ .|.++|+|+.|.+++..|--+ ...++||.++.... .-+|..+..
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e--~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~---g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNE--SVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKG---GIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCc--eEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccC---CeEeeEEec
Confidence 35678999999999999999999966 999999999999999999754 45788888875443 359999999
Q ss_pred CC
Q 016377 85 PP 86 (390)
Q Consensus 85 ~P 86 (390)
||
T Consensus 122 pp 123 (185)
T KOG3420|consen 122 PP 123 (185)
T ss_pred CC
Confidence 98
No 13
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.00 E-value=4.3e-05 Score=75.47 Aligned_cols=123 Identities=16% Similarity=0.257 Sum_probs=81.7
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeCCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
-+++|||||+|.+++.+...| . .|.++|+++.|++.-+.|... ..+.+|+.++... ..+ .+|+++.-||
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~-~--~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-~~~-~~D~vi~DPP 309 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD-T--QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-QMS-APELVLVNPP 309 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC-C--eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-cCC-CCCEEEECCC
Confidence 489999999999999998766 3 699999999999999988632 2467788765432 212 4899999999
Q ss_pred CchhhhccCCCCCCChhhhhHHHHHHhcccccCCC-cEEEEeccccccChHHHHHHHHHHHhCCceeEEEEeCCCCcCCC
Q 016377 87 CQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPP-HMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVP 165 (390)
Q Consensus 87 Cq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P-~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~a~~~G~p 165 (390)
++|. -..+++.+..+ +| .++.++-=|. ++..=+..| .||++... -..|+ .|
T Consensus 310 ---------r~G~-------~~~~l~~l~~~--~p~~ivyvsc~p~-----TlaRDl~~L--~gy~l~~~--~~~Dm-FP 361 (374)
T TIGR02085 310 ---------RRGI-------GKELCDYLSQM--APKFILYSSCNAQ-----TMAKDIAEL--SGYQIERV--QLFDM-FP 361 (374)
T ss_pred ---------CCCC-------cHHHHHHHHhc--CCCeEEEEEeCHH-----HHHHHHHHh--cCceEEEE--EEecc-CC
Confidence 2222 23444444455 55 5555654332 454444556 68988763 33344 56
Q ss_pred ccC
Q 016377 166 YSR 168 (390)
Q Consensus 166 q~R 168 (390)
|+-
T Consensus 362 qT~ 364 (374)
T TIGR02085 362 HTS 364 (374)
T ss_pred CCC
Confidence 553
No 14
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.93 E-value=8.5e-06 Score=72.20 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=52.3
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhh-hcccCccEE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAE-LDMYGAHAW 81 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~-~~~~~~D~l 81 (390)
-..-+|||||||.|.+.+=+-+-|.+ .|..+|.++.|+++.++|... .++..|+...-... .....+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiI 118 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDII 118 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEE
Confidence 35678999999999998877777976 999999999999999999753 34567765543221 122369999
Q ss_pred EeCCC
Q 016377 82 LLSPP 86 (390)
Q Consensus 82 ~~g~P 86 (390)
..-||
T Consensus 119 flDPP 123 (183)
T PF03602_consen 119 FLDPP 123 (183)
T ss_dssp EE--S
T ss_pred EECCC
Confidence 99999
No 15
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.92 E-value=0.0001 Score=78.60 Aligned_cols=150 Identities=14% Similarity=0.088 Sum_probs=97.8
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC--------CCeecCccccchhhhcccCccEEEe
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH--------RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~--------~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
.-+|||||||.|++++.+...|.. .|.++|+++.|++.-+.|... .++++|+.++-.. + +..+|+++.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~-~-~~~fDlIil 614 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE-A-REQFDLIFI 614 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH-c-CCCcCEEEE
Confidence 358999999999999999999865 899999999999999999732 2466787664321 2 225999999
Q ss_pred CCCCchhhhccCCCCCCChhhhhHHHHHHh-cccccCCC-cEEEEeccccccChHHHHHHHHHHHhCCceeEEE--EeCC
Q 016377 84 SPPCQPYTRQGLQKQSSDARAFSFLKILEL-IPHTVKPP-HMLFVENVVGFETSDTHAKMIEILANSDYLTQEF--ILSP 159 (390)
Q Consensus 84 g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~-i~~~~~~P-~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~--~l~a 159 (390)
-||.-.-|.... ...+. ..-+.++++. .+.+ +| -++++++-..- +....+.+.+.||.+... .--+
T Consensus 615 DPP~f~~~~~~~--~~~~~-~~~y~~l~~~a~~lL--~~gG~l~~~~~~~~-----~~~~~~~~~~~g~~~~~i~~~~~~ 684 (702)
T PRK11783 615 DPPTFSNSKRME--DSFDV-QRDHVALIKDAKRLL--RPGGTLYFSNNKRG-----FKMDEEGLAKLGLKAEEITAKTLP 684 (702)
T ss_pred CCCCCCCCCccc--hhhhH-HHHHHHHHHHHHHHc--CCCCEEEEEeCCcc-----CChhHHHHHhCCCeEEEEecCCCC
Confidence 999755332110 11111 1113333333 2223 33 35566765443 223367788889877644 3455
Q ss_pred CCcCCCccCcEEEEEE
Q 016377 160 LQFGVPYSRPRYFCLA 175 (390)
Q Consensus 160 ~~~G~pq~R~R~~~i~ 175 (390)
.||=++.+..|+|.|.
T Consensus 685 ~Dhp~~~~~~~~~~~~ 700 (702)
T PRK11783 685 PDFARNPKIHNCWLIT 700 (702)
T ss_pred CCCCCCcccceeEEEe
Confidence 6666778889999875
No 16
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.84 E-value=0.00012 Score=73.92 Aligned_cols=127 Identities=19% Similarity=0.268 Sum_probs=84.5
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhh-hcccCccEEEeCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAE-LDMYGAHAWLLSP 85 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~-~~~~~~D~l~~g~ 85 (390)
-+++|||||.|.+++-+...+. .|.++|+++.+++.-+.|... .++.+|+.++.... .....+|+++..|
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 5899999999999999987653 689999999999999988632 34678887643221 2122489999999
Q ss_pred CCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEE-EeccccccChHHHHHHHHHHHhCCceeEEEEeCCCCcCC
Q 016377 86 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLF-VENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGV 164 (390)
Q Consensus 86 PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~-~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~a~~~G~ 164 (390)
|.. + +..++++.+..+ +|+-++ +.. +..++..-+..|.+.||.+... -..|. .
T Consensus 371 Pr~---------G-------~~~~~l~~l~~l--~~~~ivyvsc-----~p~tlard~~~l~~~gy~~~~~--~~~Dm-F 424 (431)
T TIGR00479 371 PRK---------G-------CAAEVLRTIIEL--KPERIVYVSC-----NPATLARDLEFLCKEGYGITWV--QPVDM-F 424 (431)
T ss_pred CCC---------C-------CCHHHHHHHHhc--CCCEEEEEcC-----CHHHHHHHHHHHHHCCeeEEEE--EEecc-C
Confidence 921 2 223444444455 565443 432 2345666677888899987654 33444 5
Q ss_pred CccC
Q 016377 165 PYSR 168 (390)
Q Consensus 165 pq~R 168 (390)
||+.
T Consensus 425 P~T~ 428 (431)
T TIGR00479 425 PHTA 428 (431)
T ss_pred CCCC
Confidence 6654
No 17
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.81 E-value=0.00019 Score=63.21 Aligned_cols=138 Identities=15% Similarity=0.154 Sum_probs=86.6
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-----CCeecCccccchhhhcccCccEEEeCCCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-----RPYQGNIQNLTAAELDMYGAHAWLLSPPC 87 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-----~~~~~di~~~~~~~~~~~~~D~l~~g~PC 87 (390)
-+++|+.||.|.++..+...|. .+.++|+++.+++.-+.|... .++.+|+.+.. .+ .+|+++.+||+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----~~-~fD~Vi~n~p~ 92 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV----RG-KFDVILFNPPY 92 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc----CC-cccEEEECCCC
Confidence 4799999999999999999874 699999999999988888642 23566765532 22 59999999998
Q ss_pred chhhhccCCC--------CCCChhhhhHHHHHHhccccc-CCCcEEEEeccccccChHHHHHHHHHHHhCCceeEEEEeC
Q 016377 88 QPYTRQGLQK--------QSSDARAFSFLKILELIPHTV-KPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILS 158 (390)
Q Consensus 88 q~fS~~g~~~--------~~~d~r~~l~~~~~~~i~~~~-~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~ 158 (390)
...+..-... +..+.+ .++..+++.+..+. ..-.+++.++... ....+++.|++.||++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----~~~~~~~~l~~~gf~~~~~--- 163 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGR-KVIDRFLDELPEILKEGGRVQLIQSSLN-----GEPDTFDKLDERGFRYEIV--- 163 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchH-HHHHHHHHhHHHhhCCCCEEEEEEeccC-----ChHHHHHHHHhCCCeEEEE---
Confidence 6554321110 011111 22344444333321 1345666654322 1567788889999866432
Q ss_pred CCCcCCCccC
Q 016377 159 PLQFGVPYSR 168 (390)
Q Consensus 159 a~~~G~pq~R 168 (390)
..+|.|..+
T Consensus 164 -~~~~~~~~~ 172 (179)
T TIGR00537 164 -AERGLFFEE 172 (179)
T ss_pred -EEeecCceE
Confidence 355666543
No 18
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.76 E-value=3.5e-05 Score=68.68 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=56.1
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhccc-CccEEE
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMY-GAHAWL 82 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~-~~D~l~ 82 (390)
..-+|+|||||.|++++.+...|.. .|.++|.++.|++..+.|... .++.+|+.+.-....... .+|+++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 3468999999999999999999976 899999999999999998632 346778755322111111 279999
Q ss_pred eCCC
Q 016377 83 LSPP 86 (390)
Q Consensus 83 ~g~P 86 (390)
.-||
T Consensus 127 ~DPP 130 (189)
T TIGR00095 127 LDPP 130 (189)
T ss_pred ECcC
Confidence 9988
No 19
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00012 Score=73.34 Aligned_cols=118 Identities=23% Similarity=0.349 Sum_probs=85.4
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..-+++|||||+|.+++.+..... -|.|+|+++.|++.-+.|-.. ..+.+|..++.........+|+++.-
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD 369 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD 369 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC
Confidence 345899999999999999985444 699999999999999998643 23567888877654333358999999
Q ss_pred CCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCc--EEEEeccccccChHHHHHHHHHHHhCCceeEEE
Q 016377 85 PPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPH--MLFVENVVGFETSDTHAKMIEILANSDYLTQEF 155 (390)
Q Consensus 85 ~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~ 155 (390)
|| |+|.+ .++++.+..+ .|+ +.+-=|. .++..=+..|.+.||.+...
T Consensus 370 PP---------R~G~~-------~~~lk~l~~~--~p~~IvYVSCNP------~TlaRDl~~L~~~gy~i~~v 418 (432)
T COG2265 370 PP---------RAGAD-------REVLKQLAKL--KPKRIVYVSCNP------ATLARDLAILASTGYEIERV 418 (432)
T ss_pred CC---------CCCCC-------HHHHHHHHhc--CCCcEEEEeCCH------HHHHHHHHHHHhCCeEEEEE
Confidence 99 44443 3456666666 566 3443343 36777778899999986544
No 20
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.73 E-value=3.8e-05 Score=68.95 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=53.8
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..-+++|||||.|.+++.+...|.. .|.++|+++.|++..+.|... .++++|+.+.-.. ....+|+++..
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~--~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~--~~~~fDlV~~D 128 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAA--GATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ--PGTPHNVVFVD 128 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh--cCCCceEEEEC
Confidence 3458999999999999865545644 799999999999999988632 3466777654221 11249999999
Q ss_pred CC
Q 016377 85 PP 86 (390)
Q Consensus 85 ~P 86 (390)
||
T Consensus 129 PP 130 (199)
T PRK10909 129 PP 130 (199)
T ss_pred CC
Confidence 99
No 21
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.69 E-value=4.6e-05 Score=68.33 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=48.4
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC-----C--CCeecCccccchhhhcccCccEEEe
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG-----H--RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~-----~--~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
..=+|+|+|||+|.+++-+...+- .+.|+|+|++++|.+..+.|.. + .++++|.+++.. ...+|-++.
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----~~~~drvim 175 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----EGKFDRVIM 175 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------TT-EEEEEE
T ss_pred cceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC----ccccCEEEE
Confidence 345899999999999999887321 3489999999999999999963 2 246889888765 224899999
Q ss_pred CCC
Q 016377 84 SPP 86 (390)
Q Consensus 84 g~P 86 (390)
+.|
T Consensus 176 ~lp 178 (200)
T PF02475_consen 176 NLP 178 (200)
T ss_dssp --T
T ss_pred CCh
Confidence 988
No 22
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.55 E-value=0.00069 Score=66.74 Aligned_cols=135 Identities=19% Similarity=0.192 Sum_probs=87.6
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC--------CCeecCccccchhhhcc-cCccEEE
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH--------RPYQGNIQNLTAAELDM-YGAHAWL 82 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~--------~~~~~di~~~~~~~~~~-~~~D~l~ 82 (390)
.=+||+|||=.||+|+-...+|.. -|.++|++..|++.-+.|+-- ..+++|+-++-...... ..+|+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 346999999999999999999975 799999999999999999732 35788888875544442 2699999
Q ss_pred eCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCC--cEEEEeccccccChHHHHHHHHHHHhCCceeEE
Q 016377 83 LSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPP--HMLFVENVVGFETSDTHAKMIEILANSDYLTQE 154 (390)
Q Consensus 83 ~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P--~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~ 154 (390)
.-|| .|++..+.. ++-.|. +..+++....+ .+| .+++.=|-..+-.....+.+.+.+...|..+.+
T Consensus 296 lDPP--sF~r~k~~~-~~~~rd--y~~l~~~~~~i-L~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 296 LDPP--SFARSKKQE-FSAQRD--YKDLNDLALRL-LAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQE 363 (393)
T ss_pred ECCc--ccccCcccc-hhHHHH--HHHHHHHHHHH-cCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEE
Confidence 9999 333222211 111111 23333222222 134 666666665553333445566777777655444
No 23
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.52 E-value=0.00023 Score=68.73 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=56.0
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeCC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g~ 85 (390)
.-+|+|||||.|.+++.+...|. .|.++|+++.|++.-+.|... ..+++|+.++... ..+ .+|+++.-|
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-~~~-~~D~Vv~dP 248 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-QGE-VPDLVLVNP 248 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-cCC-CCeEEEECC
Confidence 46899999999999999998773 699999999999998888632 3467888776432 222 489999999
Q ss_pred CC
Q 016377 86 PC 87 (390)
Q Consensus 86 PC 87 (390)
|+
T Consensus 249 Pr 250 (315)
T PRK03522 249 PR 250 (315)
T ss_pred CC
Confidence 93
No 24
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.52 E-value=0.00014 Score=64.04 Aligned_cols=76 Identities=20% Similarity=0.272 Sum_probs=56.8
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhccc-CccEE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMY-GAHAW 81 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~-~~D~l 81 (390)
...-++||||||.|++.+=.-+-|.. .+..+|.|..|+.+.+.|... .++..|....-.. +... .+|++
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~-~~~~~~FDlV 118 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQ-LGTREPFDLV 118 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHh-cCCCCcccEE
Confidence 56678999999999988777777866 999999999999999999643 2455666632111 1111 39999
Q ss_pred EeCCCCc
Q 016377 82 LLSPPCQ 88 (390)
Q Consensus 82 ~~g~PCq 88 (390)
..-||=.
T Consensus 119 flDPPy~ 125 (187)
T COG0742 119 FLDPPYA 125 (187)
T ss_pred EeCCCCc
Confidence 9999943
No 25
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.51 E-value=0.00075 Score=66.41 Aligned_cols=125 Identities=18% Similarity=0.298 Sum_probs=81.0
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhc------------
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELD------------ 74 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~------------ 74 (390)
-+++|||||.|++++.+... +. .|.++|+++.|++..+.|... ..+.+|+.++... +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~~~~~ 283 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA-MNGVREFNRLKGID 283 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-Hhhccccccccccc
Confidence 36999999999999988764 44 799999999999999988632 2467888775322 21
Q ss_pred --ccCccEEEeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCcee
Q 016377 75 --MYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLT 152 (390)
Q Consensus 75 --~~~~D~l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~ 152 (390)
...+|+++.-|| +.| +..+++..+... ..++.++-=|. ++..=+..|.+ ||.+
T Consensus 284 ~~~~~~D~v~lDPP---------R~G-------~~~~~l~~l~~~---~~ivyvSC~p~-----tlarDl~~L~~-gY~l 338 (362)
T PRK05031 284 LKSYNFSTIFVDPP---------RAG-------LDDETLKLVQAY---ERILYISCNPE-----TLCENLETLSQ-THKV 338 (362)
T ss_pred ccCCCCCEEEECCC---------CCC-------CcHHHHHHHHcc---CCEEEEEeCHH-----HHHHHHHHHcC-CcEE
Confidence 113799999999 122 233444444332 45666666552 34333345554 9987
Q ss_pred EEEEeCCCCcCCCccCc
Q 016377 153 QEFILSPLQFGVPYSRP 169 (390)
Q Consensus 153 ~~~~l~a~~~G~pq~R~ 169 (390)
.. +-+.|. .||+..
T Consensus 339 ~~--v~~~Dm-FPqT~H 352 (362)
T PRK05031 339 ER--FALFDQ-FPYTHH 352 (362)
T ss_pred EE--EEEccc-CCCCCc
Confidence 65 334454 677654
No 26
>PHA03412 putative methyltransferase; Provisional
Probab=97.51 E-value=0.00016 Score=66.07 Aligned_cols=75 Identities=12% Similarity=0.197 Sum_probs=57.7
Q ss_pred CCceEEeeecCchhHHHHHHhcCC--CccEEEEEcccHHHHHHHHHhcCC-CCeecCccccchhhhcccCccEEEeCCCC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADV--SAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTAAELDMYGAHAWLLSPPC 87 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~--~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~~~~~~~~~D~l~~g~PC 87 (390)
...+|+|++||.|.+++.+...-- .-..|.++|+|+.|++.-+.|.+. .++.+|+..... .. .+|++++.||=
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~---~~-~FDlIIsNPPY 124 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF---DT-LFDMAISNPPF 124 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc---cC-CccEEEECCCC
Confidence 357999999999999998876310 012699999999999999999876 456788876532 22 59999999994
Q ss_pred ch
Q 016377 88 QP 89 (390)
Q Consensus 88 q~ 89 (390)
-.
T Consensus 125 ~~ 126 (241)
T PHA03412 125 GK 126 (241)
T ss_pred CC
Confidence 43
No 27
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.50 E-value=0.00047 Score=68.47 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=57.0
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC--------CCeecCccccchhhh-cccCccEEE
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH--------RPYQGNIQNLTAAEL-DMYGAHAWL 82 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~--------~~~~~di~~~~~~~~-~~~~~D~l~ 82 (390)
.-+|||||||.|++++.+...|.. .|.++|+++.|.+..+.|+.. .++++|+.++-.+.. .+..+|+++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~--~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 458999999999999887777754 899999999999998888631 246788877543211 122599999
Q ss_pred eCCCC
Q 016377 83 LSPPC 87 (390)
Q Consensus 83 ~g~PC 87 (390)
.-||+
T Consensus 299 lDPP~ 303 (396)
T PRK15128 299 MDPPK 303 (396)
T ss_pred ECCCC
Confidence 99997
No 28
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.47 E-value=0.00022 Score=69.85 Aligned_cols=70 Identities=26% Similarity=0.423 Sum_probs=44.7
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchh-------------hhc
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAA-------------ELD 74 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~-------------~~~ 74 (390)
+++|||||+|.+++-+...+ + -|.|+|+++.|++.-+.|... ..+.++..++... ++.
T Consensus 199 ~vlDlycG~G~fsl~la~~~-~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA-K--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS-S--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred cEEEEeecCCHHHHHHHhhC-C--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 79999999999999997644 3 699999999998888877642 2344555444221 122
Q ss_pred ccCccEEEeCCC
Q 016377 75 MYGAHAWLLSPP 86 (390)
Q Consensus 75 ~~~~D~l~~g~P 86 (390)
..++|+++.-||
T Consensus 276 ~~~~d~vilDPP 287 (352)
T PF05958_consen 276 SFKFDAVILDPP 287 (352)
T ss_dssp CTTESEEEE---
T ss_pred hcCCCEEEEcCC
Confidence 225899999999
No 29
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.46 E-value=0.00098 Score=67.45 Aligned_cols=128 Identities=18% Similarity=0.273 Sum_probs=83.0
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchh-hhcccCccEEEeC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAA-ELDMYGAHAWLLS 84 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~-~~~~~~~D~l~~g 84 (390)
.-+++|||||.|.+++.+...+ . .|.|+|+++.|++..+.|... ..+++|+.+.... .+.+..+|+++..
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~-~--~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA-A--EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC-C--EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 4689999999999999998876 3 699999999999999888631 3467888764321 1222258999999
Q ss_pred CCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeEEEEeCCCCcCC
Q 016377 85 PPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGV 164 (390)
Q Consensus 85 ~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~a~~~G~ 164 (390)
||+.+.. +.+..+..+ ....++.+.-=| .++..=+..|.+.||++.... .-|+ .
T Consensus 375 PPr~g~~-----------------~~~~~l~~~-~~~~ivyvSCnp-----~tlaRDl~~L~~~gY~l~~i~--~~Dm-F 428 (443)
T PRK13168 375 PPRAGAA-----------------EVMQALAKL-GPKRIVYVSCNP-----ATLARDAGVLVEAGYRLKRAG--MLDM-F 428 (443)
T ss_pred cCCcChH-----------------HHHHHHHhc-CCCeEEEEEeCh-----HHhhccHHHHhhCCcEEEEEE--Eecc-C
Confidence 9964211 122333333 134555555432 234444456778899887542 3344 6
Q ss_pred CccC
Q 016377 165 PYSR 168 (390)
Q Consensus 165 pq~R 168 (390)
||+.
T Consensus 429 P~T~ 432 (443)
T PRK13168 429 PHTG 432 (443)
T ss_pred CCCC
Confidence 6665
No 30
>PRK14967 putative methyltransferase; Provisional
Probab=97.45 E-value=0.0019 Score=59.12 Aligned_cols=72 Identities=24% Similarity=0.315 Sum_probs=54.8
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-----CCeecCccccchhhhcccCccEEEeCCC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-----RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-----~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
.-+++|++||.|.++.-+...|.. .+.++|+++.+++.-+.|... .++.+|+.+. ++...+|+++..||
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~----~~~~~fD~Vi~npP 110 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAG--SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA----VEFRPFDVVVSNPP 110 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh----ccCCCeeEEEECCC
Confidence 358999999999999988888864 799999999999887777532 3456676553 22235999999987
Q ss_pred Cch
Q 016377 87 CQP 89 (390)
Q Consensus 87 Cq~ 89 (390)
-..
T Consensus 111 y~~ 113 (223)
T PRK14967 111 YVP 113 (223)
T ss_pred CCC
Confidence 443
No 31
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.31 E-value=0.00059 Score=59.57 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=56.0
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC----CCeecCccccchhhhcccCccEEEeCCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH----RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~----~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
-+++|++||.|.++.-+.+.+. .+.++|+|+.+++..+.|+.. .++.+|+.++...+ ..+|.+++.+|
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~---~~~d~vi~n~P 86 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPK---LQPYKVVGNLP 86 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccc---cCCCEEEECCC
Confidence 4899999999999999988753 599999999999999999863 35788888875332 24899999888
No 32
>PHA03411 putative methyltransferase; Provisional
Probab=97.27 E-value=0.0007 Score=63.32 Aligned_cols=75 Identities=11% Similarity=0.225 Sum_probs=58.5
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-CCeecCccccchhhhcccCccEEEeCCCCc
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTAAELDMYGAHAWLLSPPCQ 88 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~~~~~~~~~D~l~~g~PCq 88 (390)
..-+|+|++||+|.+++.+... +.. .|.++|+++.+++.-+.|++. .++++|+.++.. . ..+|++++.||-.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~--~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~---~-~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPE--KIVCVELNPEFARIGKRLLPEAEWITSDVFEFES---N-EKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc---c-CCCcEEEEcCCcc
Confidence 3458999999999998887653 222 699999999999999999876 457889887642 1 2599999999976
Q ss_pred hhh
Q 016377 89 PYT 91 (390)
Q Consensus 89 ~fS 91 (390)
...
T Consensus 138 ~l~ 140 (279)
T PHA03411 138 KIN 140 (279)
T ss_pred ccC
Confidence 543
No 33
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.22 E-value=0.00055 Score=60.48 Aligned_cols=104 Identities=18% Similarity=0.143 Sum_probs=67.7
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCcc--------EEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcc
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQ--------VVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDM 75 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~--------~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~ 75 (390)
..-.++|-|||.|++-+-....+.... .++++|+|+.+++.-+.|... .+.+.|..++. +..
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~---~~~ 104 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP---LPD 104 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG---GTT
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc---ccc
Confidence 445899999999988765554443322 288999999999999999743 23466788776 222
Q ss_pred cCccEEEeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEE
Q 016377 76 YGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHML 124 (390)
Q Consensus 76 ~~~D~l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~ 124 (390)
..+|+++.-|| -|.+-+...+...|+..+++.+..+ .+|..+
T Consensus 105 ~~~d~IvtnPP------yG~r~~~~~~~~~ly~~~~~~~~~~-l~~~~v 146 (179)
T PF01170_consen 105 GSVDAIVTNPP------YGRRLGSKKDLEKLYRQFLRELKRV-LKPRAV 146 (179)
T ss_dssp SBSCEEEEE--------STTSHCHHHHHHHHHHHHHHHHHCH-STTCEE
T ss_pred CCCCEEEECcc------hhhhccCHHHHHHHHHHHHHHHHHH-CCCCEE
Confidence 35999999999 5665444344467888888888874 256433
No 34
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.15 E-value=0.00074 Score=63.48 Aligned_cols=82 Identities=18% Similarity=0.138 Sum_probs=58.1
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..-+|+|+|||.||.++-+.+.--+--.|+|+|+++..++..+.|... .++..|..++... .. .+|+++.-
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~-~~--~fD~Vl~D 147 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA-VP--KFDAILLD 147 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh-cc--CCCEEEEc
Confidence 446899999999999988765311111699999999999999888642 2345666554321 12 49999999
Q ss_pred CCCchhhhccC
Q 016377 85 PPCQPYTRQGL 95 (390)
Q Consensus 85 ~PCq~fS~~g~ 95 (390)
+||.+.-...+
T Consensus 148 ~Pcsg~G~~~~ 158 (264)
T TIGR00446 148 APCSGEGVIRK 158 (264)
T ss_pred CCCCCCccccc
Confidence 99986554443
No 35
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.14 E-value=0.0014 Score=65.89 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=61.7
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-----CCeecCccccchhhhcccCccEEEeCC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-----RPYQGNIQNLTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-----~~~~~di~~~~~~~~~~~~~D~l~~g~ 85 (390)
..-+|+|+|||.|+.++-+.+.+-. ..|.++|+++.+++..+.|... .++++|+.++... +....+|.++..+
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~ 321 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQW-WDGQPFDRILLDA 321 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhh-cccCCCCEEEECC
Confidence 4568999999999999998876531 2799999999999999888753 3467788765321 1222599999999
Q ss_pred CCchhhhcc
Q 016377 86 PCQPYTRQG 94 (390)
Q Consensus 86 PCq~fS~~g 94 (390)
||.+.....
T Consensus 322 Pcs~~G~~~ 330 (427)
T PRK10901 322 PCSATGVIR 330 (427)
T ss_pred CCCcccccc
Confidence 998755444
No 36
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.14 E-value=0.00065 Score=59.43 Aligned_cols=71 Identities=27% Similarity=0.266 Sum_probs=53.0
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCC------CeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHR------PYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~------~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..-+++||.||+|.+++.+...+-+. .|.++|+++.|.+..+.|.... ++..|+.+- +....+|+|+..
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~----~~~~~fD~Iv~N 105 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDA-KVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA----LPDGKFDLIVSN 105 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCE-EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT----CCTTCEEEEEE-
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc----ccccceeEEEEc
Confidence 45679999999999999999887643 4999999999999999987532 345666542 222369999999
Q ss_pred CC
Q 016377 85 PP 86 (390)
Q Consensus 85 ~P 86 (390)
||
T Consensus 106 PP 107 (170)
T PF05175_consen 106 PP 107 (170)
T ss_dssp --
T ss_pred cc
Confidence 99
No 37
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.08 E-value=0.0085 Score=55.42 Aligned_cols=77 Identities=25% Similarity=0.217 Sum_probs=57.3
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeCC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g~ 85 (390)
..+++|++||.|.+...+....- ...+.++|+++.+++.-+.|... .++++|+.+. +....+|++++.|
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~~~~~fD~Vi~np 162 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP----LPGGKFDLIVSNP 162 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----CcCCceeEEEECC
Confidence 45899999999999999887532 12689999999999988887532 3456676552 2223599999999
Q ss_pred CCchhhhc
Q 016377 86 PCQPYTRQ 93 (390)
Q Consensus 86 PCq~fS~~ 93 (390)
|+...+..
T Consensus 163 Py~~~~~~ 170 (251)
T TIGR03534 163 PYIPEADI 170 (251)
T ss_pred CCCchhhh
Confidence 98876643
No 38
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.07 E-value=0.016 Score=54.40 Aligned_cols=147 Identities=24% Similarity=0.259 Sum_probs=87.0
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC----C--CCeecCccccchhhhcccCccEEEe
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG----H--RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~----~--~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
....+++|+.||.|.++..+....-. ..+.++|+++.+++.-+.|.. . .++.+|+.+. +....+|+++.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~----~~~~~fD~Iv~ 181 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP----LPGGRFDLIVS 181 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc----CCCCceeEEEE
Confidence 34578999999999999998876521 269999999999999998865 1 2356676432 12235999999
Q ss_pred CCCCchhhhccC-CCCC--CChh---------hhhHHHHHHhcccccCCC-cEEEEeccccccChHHHHHHHHHHHhCCc
Q 016377 84 SPPCQPYTRQGL-QKQS--SDAR---------AFSFLKILELIPHTVKPP-HMLFVENVVGFETSDTHAKMIEILANSDY 150 (390)
Q Consensus 84 g~PCq~fS~~g~-~~~~--~d~r---------~~l~~~~~~~i~~~~~~P-~~~~~ENV~~~~~~~~~~~~~~~l~~~GY 150 (390)
.||+-+.+.... .... .++. -..+..+++-+..+ .+| -++++|- +. .....+.+.|.+.||
T Consensus 182 npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~-Lk~gG~l~~e~--g~---~~~~~~~~~l~~~gf 255 (275)
T PRK09328 182 NPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY-LKPGGWLLLEI--GY---DQGEAVRALLAAAGF 255 (275)
T ss_pred CCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh-cccCCEEEEEE--Cc---hHHHHHHHHHHhCCC
Confidence 999876654321 0000 0110 12233333322222 134 4666653 22 234567777888898
Q ss_pred eeEEEEeCCCCcCCCccCcEEEE
Q 016377 151 LTQEFILSPLQFGVPYSRPRYFC 173 (390)
Q Consensus 151 ~~~~~~l~a~~~G~pq~R~R~~~ 173 (390)
. ...+. .|+ ..+.|+++
T Consensus 256 ~-~v~~~--~d~---~~~~r~~~ 272 (275)
T PRK09328 256 A-DVETR--KDL---AGRDRVVL 272 (275)
T ss_pred c-eeEEe--cCC---CCCceEEE
Confidence 6 22222 233 24677665
No 39
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.07 E-value=0.0013 Score=56.25 Aligned_cols=104 Identities=13% Similarity=0.193 Sum_probs=72.5
Q ss_pred CCCceEEeeecCchhHHHHHH-hcCCCccEEEEEcccHHHHHHHHHhcC-----C-CCeecCccccchhhhcccCccEEE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLM-KADVSAQVVEAFDINDKANDVYELNFG-----H-RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~-~aG~~~~~v~a~e~~~~a~~~~~~n~~-----~-~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
++..+||||.||.|.+...+. ..+.. ..++++|+++.+++..+.+.. . ..+++|+.++... +. ..+|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~-~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~-~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPG-AKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE-EKFDIII 78 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTT-SEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS-TTEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCC-CEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC-CCeeEEE
Confidence 457899999999999999999 44432 259999999999999888532 1 3578999997644 54 2599999
Q ss_pred eCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEecc
Q 016377 83 LSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129 (390)
Q Consensus 83 ~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV 129 (390)
...++..+ .+ ...++..+.++++. .-.+++.+..
T Consensus 79 ~~~~l~~~---------~~-~~~~l~~~~~~lk~---~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHF---------PD-PEKVLKNIIRLLKP---GGILIISDPN 112 (152)
T ss_dssp EESTGGGT---------SH-HHHHHHHHHHHEEE---EEEEEEEEEE
T ss_pred EcCchhhc---------cC-HHHHHHHHHHHcCC---CcEEEEEECC
Confidence 99887222 22 23456667776665 3445555555
No 40
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.98 E-value=0.002 Score=60.93 Aligned_cols=139 Identities=18% Similarity=0.176 Sum_probs=74.0
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC------C--CCeecCccccchhhhcccCccEEE
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG------H--RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~------~--~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
..-+||+|||=.||+|+....+|.. .|..+|.+..|++.-+.|+. . ..+..|+.+.-..--....+|+|+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 3459999999999999999999965 89999999999999998863 1 246778876433211223699999
Q ss_pred eCCCCchhhhccCCCCCCChhh--hhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeEEEEeCCC
Q 016377 83 LSPPCQPYTRQGLQKQSSDARA--FSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPL 160 (390)
Q Consensus 83 ~g~PCq~fS~~g~~~~~~d~r~--~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~a~ 160 (390)
.-|| .|+.. + ..-.+. .|+...+++++. .-..++.=|-..+ +...+.+.+..-. ..+++....-++.
T Consensus 201 lDPP--sF~k~---~-~~~~~~y~~L~~~a~~ll~~---gG~l~~~scs~~i-~~~~l~~~~~~~a-~~~~~~~~~~~p~ 269 (286)
T PF10672_consen 201 LDPP--SFAKS---K-FDLERDYKKLLRRAMKLLKP---GGLLLTCSCSHHI-SPDFLLEAVAEAA-REVEFIERLGQPP 269 (286)
T ss_dssp E--S--SEESS---T-CEHHHHHHHHHHHHHHTEEE---EEEEEEEE--TTS--HHHHHHHHHHHH-HHCEEEEEEE---
T ss_pred ECCC--CCCCC---H-HHHHHHHHHHHHHHHHhcCC---CCEEEEEcCCccc-CHHHHHHHHHHhC-ccceEeeeecccc
Confidence 9999 44421 1 111121 233333333332 2345555665554 4333333322221 2356666666666
Q ss_pred Cc
Q 016377 161 QF 162 (390)
Q Consensus 161 ~~ 162 (390)
+|
T Consensus 270 df 271 (286)
T PF10672_consen 270 DF 271 (286)
T ss_dssp --
T ss_pred cc
Confidence 65
No 41
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.94 E-value=0.0061 Score=54.86 Aligned_cols=131 Identities=13% Similarity=0.044 Sum_probs=81.4
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCc-cccchhhhcccCccEEEe
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNI-QNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di-~~~~~~~~~~~~~D~l~~ 83 (390)
..-+++|+.||.|..+..+....- ...+.++|+++.+++.-+.|... .++++|+ ..+. ..+....+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-DMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-HHcCccccceEEE
Confidence 356899999999999999876421 22699999999999888877521 3467788 5443 1233335999998
Q ss_pred CCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeE
Q 016377 84 SPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQ 153 (390)
Q Consensus 84 g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~ 153 (390)
.+|.+......... ......++.++.++++. .-.+++..+... .+..+++.+++.|+.+.
T Consensus 118 ~~~~p~~~~~~~~~--~~~~~~~l~~i~~~Lkp---gG~l~i~~~~~~-----~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 118 NFPDPWPKKRHHKR--RLVQPEFLALYARKLKP---GGEIHFATDWEG-----YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred ECCCCCCCcccccc--ccCCHHHHHHHHHHcCC---CCEEEEEcCCHH-----HHHHHHHHHHhCccccc
Confidence 76643322111100 00123344555555543 344555554433 47788899999887665
No 42
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.94 E-value=0.0053 Score=47.16 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=54.4
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhc---CC---CCeecCccccchhhhcccCccEEEeCCCC
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF---GH---RPYQGNIQNLTAAELDMYGAHAWLLSPPC 87 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~---~~---~~~~~di~~~~~~~~~~~~~D~l~~g~PC 87 (390)
+++|+.||.|+.+..+...+.. .+.++|+++.+.+..+.+. .. .++..|+.+.... ....+|+++..++|
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGA--RVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE--ADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCC--EEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc--cCCceEEEEEccce
Confidence 5899999999999999885433 7999999999988777222 11 3456777776541 12259999999999
Q ss_pred chh
Q 016377 88 QPY 90 (390)
Q Consensus 88 q~f 90 (390)
..+
T Consensus 77 ~~~ 79 (107)
T cd02440 77 HHL 79 (107)
T ss_pred eeh
Confidence 877
No 43
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.94 E-value=0.0013 Score=60.62 Aligned_cols=131 Identities=17% Similarity=0.316 Sum_probs=82.4
Q ss_pred CceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEe
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
.-+++||.||.|.+++-+..- .- ..+.++|+++.+++.-++|... .+++.||.++....-.. .+|+++.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~--a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~-~fD~Ii~ 121 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK--AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA-SFDLIIC 121 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC--CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc-ccCEEEe
Confidence 678999999999999998875 32 2699999999999988888653 45788998886543222 5999999
Q ss_pred CCCCchhhhccCCCCCCC-------hhhhhHHHHHHhcccccCCCc--EEEEeccccccChHHHHHHHHHHHhCCceeEE
Q 016377 84 SPPCQPYTRQGLQKQSSD-------ARAFSFLKILELIPHTVKPPH--MLFVENVVGFETSDTHAKMIEILANSDYLTQE 154 (390)
Q Consensus 84 g~PCq~fS~~g~~~~~~d-------~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~ 154 (390)
.|| |=..|..+..+. +-...+.++++....+. +|. +.++ .......+|++.|.+.+.....
T Consensus 122 NPP---yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~l-k~~G~l~~V------~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 122 NPP---YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLL-KPGGRLAFV------HRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCC---CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHc-cCCCEEEEE------ecHHHHHHHHHHHHhcCCCceE
Confidence 999 222222211111 11233555555555541 231 1111 1122466777888776655544
Q ss_pred E
Q 016377 155 F 155 (390)
Q Consensus 155 ~ 155 (390)
.
T Consensus 192 i 192 (248)
T COG4123 192 I 192 (248)
T ss_pred E
Confidence 3
No 44
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.93 E-value=0.0038 Score=60.62 Aligned_cols=75 Identities=24% Similarity=0.221 Sum_probs=56.9
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC-----C-CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG-----H-RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~-----~-~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..-+++|.|||.|++.+.+...|. .+.++|+++.+++.-+.|.. + .++.+|+.++... ...+|+++..
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~---~~~~D~Iv~d 255 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS---SESVDAIATD 255 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc---cCCCCEEEEC
Confidence 445899999999999887777775 48899999999887777753 2 3457888876432 2359999999
Q ss_pred CCCchhh
Q 016377 85 PPCQPYT 91 (390)
Q Consensus 85 ~PCq~fS 91 (390)
|||...+
T Consensus 256 PPyg~~~ 262 (329)
T TIGR01177 256 PPYGRST 262 (329)
T ss_pred CCCcCcc
Confidence 9985433
No 45
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.91 E-value=0.0017 Score=65.68 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=60.1
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..-+|+|+|||.||.+.-+.+..-..-.|+|+|+++..++..+.|... .++++|..++.+ ...+|+++..
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~----~~~fD~Vl~D 325 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP----EEQPDAILLD 325 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc----CCCCCEEEEc
Confidence 346899999999999877665210011699999999999988888642 245677776542 2249999999
Q ss_pred CCCchhhhccC
Q 016377 85 PPCQPYTRQGL 95 (390)
Q Consensus 85 ~PCq~fS~~g~ 95 (390)
+||.+.....+
T Consensus 326 ~Pcsg~g~~~r 336 (445)
T PRK14904 326 APCTGTGVLGR 336 (445)
T ss_pred CCCCCcchhhc
Confidence 99998887665
No 46
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.89 E-value=0.0014 Score=64.84 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=53.9
Q ss_pred CceEEeeecCchhHHHHHH-hcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeC
Q 016377 12 AWRVLEFYSGIGGMRYSLM-KADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~-~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..+++|+|||+|.+++-+. .+|.. .|+++|+++.|++..+.|... .++++|+.++-.. ...+|+++.-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~--~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVE--KVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---ERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---cCCCCEEEEC
Confidence 3589999999999999885 45754 799999999999999998632 2566777664321 2259999998
Q ss_pred CC
Q 016377 85 PP 86 (390)
Q Consensus 85 ~P 86 (390)
||
T Consensus 133 P~ 134 (382)
T PRK04338 133 PF 134 (382)
T ss_pred CC
Confidence 87
No 47
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.86 E-value=0.0018 Score=63.57 Aligned_cols=124 Identities=19% Similarity=0.278 Sum_probs=79.3
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhh-----h---c-----
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAE-----L---D----- 74 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~-----~---~----- 74 (390)
+++|||||.|.+++.+.... . .|.++|+++.|++..+.|... .++.+|+.++.... + .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~-~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF-R--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhC-C--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 59999999999999887643 4 799999999999999998732 24678887754321 1 1
Q ss_pred ccCccEEEeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeEE
Q 016377 75 MYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQE 154 (390)
Q Consensus 75 ~~~~D~l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~ 154 (390)
...+|+++.-|| +.|. ...++..+.. ...++.+|-=|. ++..=+..|. .||.+..
T Consensus 277 ~~~~d~v~lDPP---------R~G~-------~~~~l~~l~~---~~~ivYvsC~p~-----tlaRDl~~L~-~~Y~l~~ 331 (353)
T TIGR02143 277 SYNCSTIFVDPP---------RAGL-------DPDTCKLVQA---YERILYISCNPE-----TLKANLEQLS-ETHRVER 331 (353)
T ss_pred cCCCCEEEECCC---------CCCC-------cHHHHHHHHc---CCcEEEEEcCHH-----HHHHHHHHHh-cCcEEEE
Confidence 113799999999 1222 2344444433 256777776553 3444344555 3487766
Q ss_pred EEeCCCCcCCCccC
Q 016377 155 FILSPLQFGVPYSR 168 (390)
Q Consensus 155 ~~l~a~~~G~pq~R 168 (390)
.. ..|. .||+.
T Consensus 332 v~--~~Dm-FP~T~ 342 (353)
T TIGR02143 332 FA--LFDQ-FPYTH 342 (353)
T ss_pred EE--Eccc-CCCCC
Confidence 43 2233 55553
No 48
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.84 E-value=0.002 Score=65.03 Aligned_cols=85 Identities=14% Similarity=0.041 Sum_probs=60.4
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhh-hcccCccEEEe
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAE-LDMYGAHAWLL 83 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~-~~~~~~D~l~~ 83 (390)
..-+|+|+|||.||.+.-+....-.--.|.|+|+++..++..+.|... .++++|..++.... .....+|.++.
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 346899999999999988876421111699999999999988888642 34567877664211 11225999999
Q ss_pred CCCCchhhhccC
Q 016377 84 SPPCQPYTRQGL 95 (390)
Q Consensus 84 g~PCq~fS~~g~ 95 (390)
.+||.+.....+
T Consensus 332 DaPCSg~G~~~r 343 (434)
T PRK14901 332 DAPCSGLGTLHR 343 (434)
T ss_pred eCCCCccccccc
Confidence 999988555444
No 49
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.82 E-value=0.0021 Score=65.12 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=59.5
Q ss_pred CceEEeeecCchhHHHHHHhc--CCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEe
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA--DVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a--G~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
.-+|+|+|||.|+.++.+... +-. .|.|+|+++.+.+..+.|... .++++|+.++.. .+.+ .+|+++.
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~--~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~~~-~fD~Vl~ 326 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTG--KVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KFAE-KFDKILV 326 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hhcc-cCCEEEE
Confidence 357999999999999988764 222 799999999999998888632 345678877532 2332 5999999
Q ss_pred CCCCchhhhcc
Q 016377 84 SPPCQPYTRQG 94 (390)
Q Consensus 84 g~PCq~fS~~g 94 (390)
.+||.++....
T Consensus 327 D~Pcsg~G~~~ 337 (444)
T PRK14902 327 DAPCSGLGVIR 337 (444)
T ss_pred cCCCCCCeeec
Confidence 99998765543
No 50
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.80 E-value=0.0015 Score=64.29 Aligned_cols=71 Identities=20% Similarity=0.081 Sum_probs=53.7
Q ss_pred CceEEeeecCchhHHHHHHhc--CCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEe
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA--DVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a--G~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
.+++||+|||+|..++=+..- |.+ .|+++|+++.|++..+.|... .++++|...+-... . ..+|++..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~--~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~-~-~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVR--EVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR-N-RKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh-C-CCCCEEEe
Confidence 489999999999877777654 755 899999999999999999742 24566766653321 1 24899988
Q ss_pred CCC
Q 016377 84 SPP 86 (390)
Q Consensus 84 g~P 86 (390)
-|+
T Consensus 121 DPf 123 (374)
T TIGR00308 121 DPF 123 (374)
T ss_pred CCC
Confidence 776
No 51
>PRK14968 putative methyltransferase; Provisional
Probab=96.76 E-value=0.02 Score=50.24 Aligned_cols=72 Identities=24% Similarity=0.203 Sum_probs=53.3
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC--------CCeecCccccchhhhcccCccEEE
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH--------RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~--------~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
..-+++|+.||.|.++..+...|. .+.++|+++.+.+..+.|... ..+.+|..+. +....+|+++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~d~vi 95 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----FRGDKFDVIL 95 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----ccccCceEEE
Confidence 345899999999999999988864 588999999999888777531 1245565442 2222599999
Q ss_pred eCCCCch
Q 016377 83 LSPPCQP 89 (390)
Q Consensus 83 ~g~PCq~ 89 (390)
..+|+..
T Consensus 96 ~n~p~~~ 102 (188)
T PRK14968 96 FNPPYLP 102 (188)
T ss_pred ECCCcCC
Confidence 9998643
No 52
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.0028 Score=60.11 Aligned_cols=128 Identities=18% Similarity=0.223 Sum_probs=80.2
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccch---hhhcccCccEEEeCCCCchh
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTA---AELDMYGAHAWLLSPPCQPY 90 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~---~~~~~~~~D~l~~g~PCq~f 90 (390)
+++|+++|.|.+++++...+-+ -.|.|+|++++|+++-+.|-...-. .++..+.. +.+.+ .+|+|+..||=-+-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~-~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRG-KFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCC-ceeEEEeCCCCCCC
Confidence 8999999999999999998753 2699999999999999999754221 11222211 12333 69999999997777
Q ss_pred hhccCCCC--CCChhh---------hhHHHHHHhcccccCCC-cEEEEeccccccChHHHHHHHHHHHhCCc
Q 016377 91 TRQGLQKQ--SSDARA---------FSFLKILELIPHTVKPP-HMLFVENVVGFETSDTHAKMIEILANSDY 150 (390)
Q Consensus 91 S~~g~~~~--~~d~r~---------~l~~~~~~~i~~~~~~P-~~~~~ENV~~~~~~~~~~~~~~~l~~~GY 150 (390)
+......+ ..++.. ..+..++.-+..+ .+| .++++|==.+ .-+.+.+.|.+.|+
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~-l~~~g~l~le~g~~-----q~~~v~~~~~~~~~ 255 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDI-LKPGGVLILEIGLT-----QGEAVKALFEDTGF 255 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHH-cCCCcEEEEEECCC-----cHHHHHHHHHhcCC
Confidence 61111110 012211 2344444433333 245 5666663322 35678888999996
No 53
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.64 E-value=0.00088 Score=62.48 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=40.3
Q ss_pred ceEEeeecCchhHHH-HHHhcCCCccEEEEEcccHHHHHHHHHhcCC
Q 016377 13 WRVLEFYSGIGGMRY-SLMKADVSAQVVEAFDINDKANDVYELNFGH 58 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~-g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~ 58 (390)
-.++|||||+|=+++ -+..||.+ .|+|+|+++++.+++++|-..
T Consensus 196 eviVDLYAGIGYFTlpflV~agAk--~V~A~EwNp~svEaLrR~~~~ 240 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGAK--TVFACEWNPWSVEALRRNAEA 240 (351)
T ss_pred chhhhhhcccceEEeehhhccCcc--EEEEEecCHHHHHHHHHHHHh
Confidence 568999999999999 88899966 999999999999999999864
No 54
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.64 E-value=0.0045 Score=58.81 Aligned_cols=129 Identities=19% Similarity=0.133 Sum_probs=79.0
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEeC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..+++|++||.|.+++.+....-.. .+.++|+++.|++.-+.|... .++++|+.+. ++...+|+++..
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~-~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~~~~~fD~Iv~N 196 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEA-EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----LPGRKYDLIVSN 196 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----cCCCCccEEEEC
Confidence 4689999999999999998764212 589999999999998888532 2356776542 222259999999
Q ss_pred CCCchhhhccCCC-C-CCChhh---------hhHHHHHHhcccccCCC-cEEEEeccccccChHHHHHHHHHHHhCCcee
Q 016377 85 PPCQPYTRQGLQK-Q-SSDARA---------FSFLKILELIPHTVKPP-HMLFVENVVGFETSDTHAKMIEILANSDYLT 152 (390)
Q Consensus 85 ~PCq~fS~~g~~~-~-~~d~r~---------~l~~~~~~~i~~~~~~P-~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~ 152 (390)
||+-+.+...... . ..+++. .++..+++-+..+ .+| -++++|=-. ....+.+.+.+.||..
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~-L~~gG~l~~e~g~------~~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADH-LNENGVLVVEVGN------SMEALEEAYPDVPFTW 269 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHh-cCCCCEEEEEECc------CHHHHHHHHHhCCCce
Confidence 9987655322100 0 011111 2234444333332 145 366666321 1246777777777644
No 55
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.62 E-value=0.042 Score=49.15 Aligned_cols=123 Identities=12% Similarity=0.087 Sum_probs=74.6
Q ss_pred CCceEEeeecCchhHHHHHHh-cCCCccEEEEEcccHHHHHHHHHhcC-----C--CCeecCccccchhhhcccCccEEE
Q 016377 11 EAWRVLEFYSGIGGMRYSLMK-ADVSAQVVEAFDINDKANDVYELNFG-----H--RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~-aG~~~~~v~a~e~~~~a~~~~~~n~~-----~--~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
..-+++|++||.|.+++.+.. +|- ...|+++|+++.+++.-+.|.. + .++.+|..+... .+.. .+|.++
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~-~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~-~~~~-~~D~V~ 116 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGE-TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILF-TINE-KFDRIF 116 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHh-hcCC-CCCEEE
Confidence 345899999999999998765 332 1269999999999987776632 2 234566655322 1222 589988
Q ss_pred eCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCC-cEEEEeccccccChHHHHHHHHHHHhCCceeEEEEeC
Q 016377 83 LSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPP-HMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILS 158 (390)
Q Consensus 83 ~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P-~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~ 158 (390)
.+.. ..+ -..++....++ + +| -.++++.+ .-...+.++..|++.|+.++..-+.
T Consensus 117 ~~~~------------~~~-~~~~l~~~~~~---L--kpgG~lv~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~ 171 (198)
T PRK00377 117 IGGG------------SEK-LKEIISASWEI---I--KKGGRIVIDAI----LLETVNNALSALENIGFNLEITEVI 171 (198)
T ss_pred ECCC------------ccc-HHHHHHHHHHH---c--CCCcEEEEEee----cHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7521 111 12233333443 3 45 34455444 2235788889999999876544333
No 56
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.60 E-value=0.0028 Score=56.69 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=68.1
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhc-----CC--CCeecCccccchh-hhcccCccEEEeC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF-----GH--RPYQGNIQNLTAA-ELDMYGAHAWLLS 84 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~-----~~--~~~~~di~~~~~~-~~~~~~~D~l~~g 84 (390)
-.++|.|||+||-+.=|..-|- .|.++|+|+--+..-++|. |+ ..+++|+-++-.. .+.+..+|++..+
T Consensus 96 ~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred chhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 4589999999999999988775 6999999999998888886 33 3479999876432 1222237788888
Q ss_pred CCCchhhhccCCC-CCCChhhhhHHHHHHhcccc
Q 016377 85 PPCQPYTRQGLQK-QSSDARAFSFLKILELIPHT 117 (390)
Q Consensus 85 ~PCq~fS~~g~~~-~~~d~r~~l~~~~~~~i~~~ 117 (390)
||.-+-|-.+... .+++-....+.++++.-..+
T Consensus 173 ppwggp~y~~~~~~DL~~~~~p~~~~~fk~s~ki 206 (263)
T KOG2730|consen 173 PPWGGPSYLRADVYDLETHLKPMGTKIFKSSLKI 206 (263)
T ss_pred CCCCCcchhhhhhhhhhhhcchhHHHHHHhhhhc
Confidence 8876666555421 12221122345555544444
No 57
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.60 E-value=0.0056 Score=49.00 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=52.9
Q ss_pred CceEEeeecCchhHHHHHHh--cCCCccEEEEEcccHHHHHHHHHhcC-----C--CCeecCccccchhhhcccCccEEE
Q 016377 12 AWRVLEFYSGIGGMRYSLMK--ADVSAQVVEAFDINDKANDVYELNFG-----H--RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~--aG~~~~~v~a~e~~~~a~~~~~~n~~-----~--~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
.-+|+||-||.|.++..+.+ .|. .+.++|+++..++..+.|.. . .++++|+ ....+... ++|+++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~--~~D~v~ 75 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLE--PFDLVI 75 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSS--CEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCC--CCCEEE
Confidence 35799999999999999999 665 49999999999999999981 1 3467898 33333333 499998
Q ss_pred eCC
Q 016377 83 LSP 85 (390)
Q Consensus 83 ~g~ 85 (390)
.+.
T Consensus 76 ~~~ 78 (112)
T PF12847_consen 76 CSG 78 (112)
T ss_dssp ECS
T ss_pred ECC
Confidence 765
No 58
>PTZ00146 fibrillarin; Provisional
Probab=96.58 E-value=0.11 Score=49.18 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=88.8
Q ss_pred CceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhc---CC-CCeecCccccc-hhhhcccCccEEEeCC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNF---GH-RPYQGNIQNLT-AAELDMYGAHAWLLSP 85 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~---~~-~~~~~di~~~~-~~~~~~~~~D~l~~g~ 85 (390)
..+||||.||.|.++.-+... |-+ -.|+|+|+++.+.+-+.... ++ .++.+|++.-. ...+.+ .+|+++...
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~-G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~-~vDvV~~Dv 210 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPE-GVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVP-MVDVIFADV 210 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccC-CCCEEEEeC
Confidence 358999999999999998875 321 27999999986543332222 22 45678886532 111222 489998765
Q ss_pred CCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccCh----HHHHHHHHHHHhCCceeEEEEeCCCC
Q 016377 86 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS----DTHAKMIEILANSDYLTQEFILSPLQ 161 (390)
Q Consensus 86 PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~----~~~~~~~~~l~~~GY~~~~~~l~a~~ 161 (390)
. | .|....+..++.++++. .=.+++...-..+-.. ..|+.-++.|++.||.+...+ +
T Consensus 211 a-~-----------pdq~~il~~na~r~LKp---GG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v-~--- 271 (293)
T PTZ00146 211 A-Q-----------PDQARIVALNAQYFLKN---GGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQL-T--- 271 (293)
T ss_pred C-C-----------cchHHHHHHHHHHhccC---CCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEE-e---
Confidence 3 1 23333445566666554 3445554333333221 134444588999999866443 2
Q ss_pred cCCCccCcEEEEEEEeCC
Q 016377 162 FGVPYSRPRYFCLAKRKP 179 (390)
Q Consensus 162 ~G~pq~R~R~~~i~~~~~ 179 (390)
. -|..|....+|+..+.
T Consensus 272 L-~Py~~~h~~v~~~~~~ 288 (293)
T PTZ00146 272 L-EPFERDHAVVIGVYRP 288 (293)
T ss_pred c-CCccCCcEEEEEEEcC
Confidence 1 5778999999988764
No 59
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.57 E-value=0.021 Score=52.21 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=65.7
Q ss_pred CceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
.-+|||+.||.|.++.-+.+. |-. ..+.++|+++..++..+.|... .++.+|+.++. ++...+|+++.+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~ 121 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP---FDDNSFDYVTIG 121 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC---CCCCCccEEEEe
Confidence 458999999999998888764 321 2589999999998887777632 24667877653 233359999877
Q ss_pred CCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEecc
Q 016377 85 PPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129 (390)
Q Consensus 85 ~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV 129 (390)
...+.+ .+ ...++.++.++++. .-.++++|..
T Consensus 122 ~~l~~~---------~~-~~~~l~~~~~~Lk~---gG~l~~~~~~ 153 (231)
T TIGR02752 122 FGLRNV---------PD-YMQVLREMYRVVKP---GGKVVCLETS 153 (231)
T ss_pred cccccC---------CC-HHHHHHHHHHHcCc---CeEEEEEECC
Confidence 543322 12 22345555555543 3456677754
No 60
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.57 E-value=0.0027 Score=60.46 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=76.4
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCchhh
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQPYT 91 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~fS 91 (390)
.-+|+|+=||.|-++++....|.+ .|.|+|+|+.|+++-+.|...+-+...+.-....+.....+|++++.--
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI~----- 234 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVANIL----- 234 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEEES------
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEECCC-----
Confidence 349999999999999999999976 9999999999999999997533222222111222233346999985321
Q ss_pred hccCCCCCCChhhhhHHHHH-HhcccccCCCc-EEEEeccccccChHHHHHHHHHHHhCCceeEEEEe
Q 016377 92 RQGLQKQSSDARAFSFLKIL-ELIPHTVKPPH-MLFVENVVGFETSDTHAKMIEILANSDYLTQEFIL 157 (390)
Q Consensus 92 ~~g~~~~~~d~r~~l~~~~~-~~i~~~~~~P~-~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l 157 (390)
. + .+..+. .+...+ +|. ++++ .|++..+ ...+++.+++ |+.+....-
T Consensus 235 --------~---~-vL~~l~~~~~~~l--~~~G~lIl---SGIl~~~-~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 235 --------A---D-VLLELAPDIASLL--KPGGYLIL---SGILEEQ-EDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp --------H---H-HHHHHHHHCHHHE--EEEEEEEE---EEEEGGG-HHHHHHHHHT-TEEEEEEEE
T ss_pred --------H---H-HHHHHHHHHHHhh--CCCCEEEE---ccccHHH-HHHHHHHHHC-CCEEEEEEE
Confidence 1 1 222232 223333 454 4444 7888765 5677888877 998865543
No 61
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.57 E-value=0.005 Score=62.06 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=60.1
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEe
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
..-+|+|+|||.||.+.-+... +- .-.|.|+|+++..++..+.|... .++.+|..++.. .....+|.++.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~--~~~~~fD~Vl~ 313 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKD-QGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE--YVQDTFDRILV 313 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh--hhhccCCEEEE
Confidence 4458999999999999877764 11 11699999999999999988643 245677766532 11225999999
Q ss_pred CCCCchhhhccC
Q 016377 84 SPPCQPYTRQGL 95 (390)
Q Consensus 84 g~PCq~fS~~g~ 95 (390)
-+||.++-...+
T Consensus 314 DaPCsg~G~~~~ 325 (431)
T PRK14903 314 DAPCTSLGTARN 325 (431)
T ss_pred CCCCCCCccccC
Confidence 999987765443
No 62
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.57 E-value=0.021 Score=53.10 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=74.8
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCch
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQP 89 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~ 89 (390)
...-+|+|+.||.|.+++.+...|.. .|.++|+++.+++.-+.|....-+. +...+...+. .+|++++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~-~~~~~~~~~~---~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVE-LNVYLPQGDL---KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCC-ceEEEccCCC---CcCEEEEcCc---
Confidence 34568999999999999999998875 7999999999999988887543221 1111211111 3899986431
Q ss_pred hhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeEEE
Q 016377 90 YTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEF 155 (390)
Q Consensus 90 fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~ 155 (390)
.+....++.++.++++. .-.+++. ++.. .....+...+.+.|+.+...
T Consensus 189 ----------~~~~~~l~~~~~~~Lkp---gG~lils----gi~~-~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 189 ----------ANPLLELAPDLARLLKP---GGRLILS----GILE-EQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred ----------HHHHHHHHHHHHHhcCC---CcEEEEE----ECcH-hhHHHHHHHHHHCCCEEEEE
Confidence 11122334444444332 2233332 3332 23677889999999987654
No 63
>PRK04266 fibrillarin; Provisional
Probab=96.46 E-value=0.17 Score=46.39 Aligned_cols=143 Identities=10% Similarity=0.085 Sum_probs=82.6
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcC---C-CCeecCccccch-hhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFG---H-RPYQGNIQNLTA-AELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~---~-~~~~~di~~~~~-~~~~~~~~D~l~~g 84 (390)
..-+|+|+.||.|+++..+.+. +-. .|+|+|+++..++....+.. + .++.+|+.+... ..+.+ .+|+++..
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g--~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~-~~D~i~~d 148 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEG--VVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVE-KVDVIYQD 148 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCC--eEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccc-cCCEEEEC
Confidence 3458999999999999999874 312 79999999987776554432 2 356788875321 22333 49998843
Q ss_pred CCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEE-e--ccccccC-hHHHHHHHHHHHhCCceeEEEEeCCC
Q 016377 85 PPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFV-E--NVVGFET-SDTHAKMIEILANSDYLTQEFILSPL 160 (390)
Q Consensus 85 ~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~-E--NV~~~~~-~~~~~~~~~~l~~~GY~~~~~~l~a~ 160 (390)
.+ ..+....++.++.++++- .-.+++. . ++.--.. ...++..++.|+..|+.+...+ +.
T Consensus 149 ~~------------~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~-~l- 211 (226)
T PRK04266 149 VA------------QPNQAEIAIDNAEFFLKD---GGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVV-DL- 211 (226)
T ss_pred CC------------ChhHHHHHHHHHHHhcCC---CcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEE-cC-
Confidence 22 011112234455555443 3344442 1 1111111 1356677899999999865432 22
Q ss_pred CcCCCccCcEEEEEEE
Q 016377 161 QFGVPYSRPRYFCLAK 176 (390)
Q Consensus 161 ~~G~pq~R~R~~~i~~ 176 (390)
.|..+.-+.+|+.
T Consensus 212 ---~p~~~~h~~~v~~ 224 (226)
T PRK04266 212 ---EPYHKDHAAVVAR 224 (226)
T ss_pred ---CCCcCCeEEEEEE
Confidence 3444555556654
No 64
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.45 E-value=0.0062 Score=57.01 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=56.2
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC----CCeecCccccchhhhcccCccEEEeCCC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH----RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~----~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
..-+|+|+.||.|.++..+.+.+. .+.++|+|+..++..+.++.. .++++|+.++. ++. +|.+++.+|
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~---~~~--~d~Vv~NlP 100 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD---LPE--FNKVVSNLP 100 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC---chh--ceEEEEcCC
Confidence 345899999999999999999864 589999999999999888753 35788988774 333 799999999
No 65
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.43 E-value=0.0061 Score=58.60 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=55.9
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEeCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~g~ 85 (390)
.+++|++||.|.+++.+....- ...|.++|+++.|++.-+.|... .++++|+.+. ++...+|+++..|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----LPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----CCCCCccEEEECC
Confidence 5899999999999999987532 12589999999999999988632 2456776542 2222599999999
Q ss_pred CCchhh
Q 016377 86 PCQPYT 91 (390)
Q Consensus 86 PCq~fS 91 (390)
|+-+.+
T Consensus 210 Pyi~~~ 215 (307)
T PRK11805 210 PYVDAE 215 (307)
T ss_pred CCCCcc
Confidence 986644
No 66
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.40 E-value=0.0085 Score=56.56 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=57.2
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC---CCeecCccccchhhhcccCccEEEeCCC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH---RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~---~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
..-+|+|+-||.|.++..+.+.+. .|.|+|+|+..++..+.++.. .++++|+.+++..++. .|.+++.+|
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~---~~~vv~NlP 114 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQ---PLKVVANLP 114 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcC---cceEEEeCC
Confidence 345899999999999999999874 589999999999999988843 4678999988644332 588999988
No 67
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.011 Score=55.97 Aligned_cols=122 Identities=14% Similarity=0.067 Sum_probs=79.9
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecC--ccccchhhhcc-cCccEEEeCCCC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGN--IQNLTAAELDM-YGAHAWLLSPPC 87 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~d--i~~~~~~~~~~-~~~D~l~~g~PC 87 (390)
...+|+|+=||.|-++++....|.+ .+.|+|+|+.|.++-+.|.--+-+... +.-....+.+. ..+|++++.-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-- 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-- 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh--
Confidence 6789999999999999999999976 999999999999999999754322111 11111222222 3699999531
Q ss_pred chhhhccCCCCCCChhhhhHHHHHHhcccccCCCc-EEEEeccccccChHHHHHHHHHHHhCCceeEEEE
Q 016377 88 QPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPH-MLFVENVVGFETSDTHAKMIEILANSDYLTQEFI 156 (390)
Q Consensus 88 q~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~-~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~ 156 (390)
+.+.--.|...+.+ .+ +|- ++++ .|++..+ .+.+++.+++.|..+....
T Consensus 238 -----------LA~vl~~La~~~~~---~l--kpgg~lIl---SGIl~~q-~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 238 -----------LAEVLVELAPDIKR---LL--KPGGRLIL---SGILEDQ-AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred -----------hHHHHHHHHHHHHH---Hc--CCCceEEE---EeehHhH-HHHHHHHHHhCCCeEeEEE
Confidence 23333334444444 33 452 2222 4566555 6778899999998876554
No 68
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.24 E-value=0.057 Score=51.40 Aligned_cols=73 Identities=15% Similarity=0.051 Sum_probs=50.3
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccc--hhhhcccCccEEEeCC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLT--AAELDMYGAHAWLLSP 85 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~--~~~~~~~~~D~l~~g~ 85 (390)
..-+|+|+.||.|.++..+...|.. .|.++|+++.+++.-+.|.....+...+.... ........+|++++..
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~ 233 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANI 233 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEec
Confidence 3468999999999999999988865 89999999999998888865321111111110 0111222599999764
No 69
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.20 E-value=0.07 Score=51.41 Aligned_cols=45 Identities=20% Similarity=0.143 Sum_probs=39.3
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH 58 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~ 58 (390)
...+|||+.||.|.++.-+...|. .|.++|+++.+++.-+.|.+.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~ 188 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKE 188 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHh
Confidence 457999999999999999999886 489999999999888888653
No 70
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.12 E-value=0.039 Score=56.32 Aligned_cols=149 Identities=11% Similarity=0.027 Sum_probs=96.4
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC---C-CCeecCccccchhhhcccCccEEEeCCCC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG---H-RPYQGNIQNLTAAELDMYGAHAWLLSPPC 87 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~---~-~~~~~di~~~~~~~~~~~~~D~l~~g~PC 87 (390)
.-+++|+.||.|.++..|...+. .|.++|+++.+++.-....+ . .++++|+.+... .++...+|+++.+.++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~-~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL-NISDGSVDLIFSNWLL 113 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc-CCCCCCEEEEehhhhH
Confidence 34899999999999999998753 58999999999876443332 1 346778864321 2333359999987764
Q ss_pred chhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEecccccc-------ChH---HHHHHHHHHHhCCceeE----
Q 016377 88 QPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFE-------TSD---THAKMIEILANSDYLTQ---- 153 (390)
Q Consensus 88 q~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~-------~~~---~~~~~~~~l~~~GY~~~---- 153 (390)
.-++ +++...++.++.++++. .-.+++.||+..-- +.. ....+.+.+.+.|+...
T Consensus 114 ~~l~--------~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 182 (475)
T PLN02336 114 MYLS--------DKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNS 182 (475)
T ss_pred HhCC--------HHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCE
Confidence 4332 12234566777776654 45677778774321 111 25567777777765432
Q ss_pred -------EEEeCCCCcCCCccCcEEEEEEEe
Q 016377 154 -------EFILSPLQFGVPYSRPRYFCLAKR 177 (390)
Q Consensus 154 -------~~~l~a~~~G~pq~R~R~~~i~~~ 177 (390)
+.++ ..|.+|.+-.|+++-..+
T Consensus 183 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 211 (475)
T PLN02336 183 FELSLVGCKCI--GAYVKNKKNQNQICWLWQ 211 (475)
T ss_pred EEEEEEEeech--hhhhhccCCcceEEEEEE
Confidence 2333 357899999999886554
No 71
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.11 E-value=0.012 Score=55.90 Aligned_cols=75 Identities=23% Similarity=0.162 Sum_probs=56.8
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEeCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~g~ 85 (390)
.+++|++||.|.+++.+....-. ..+.++|+++.|++.-+.|... .++.+|+.+. +....+|+++..|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----LAGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----CcCCCccEEEECC
Confidence 68999999999999999876432 2589999999999999988531 2356676542 2222499999999
Q ss_pred CCchhhh
Q 016377 86 PCQPYTR 92 (390)
Q Consensus 86 PCq~fS~ 92 (390)
|.-+.+.
T Consensus 191 Pyi~~~~ 197 (284)
T TIGR00536 191 PYIDEED 197 (284)
T ss_pred CCCCcch
Confidence 9877654
No 72
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.09 E-value=0.016 Score=54.10 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=55.9
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC----CCeecCccccchhhhcccCccEEEeCCC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH----RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~----~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
..-+|+|+.||.|.++..+.+.+- .+.++|+|+..++..+.+++. .++.+|+.++....+.. .+++++.+|
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~--~~~vvsNlP 103 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK--QLKVVSNLP 103 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC--cceEEEcCC
Confidence 346899999999999999999884 499999999999999988752 35778988876432221 248888887
No 73
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.08 E-value=0.012 Score=58.47 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=52.2
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-----CCeecCccccchhhhcccCccEEEeCCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-----RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-----~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
-+++|++||.|.+++.+....- ...+.++|+++.|++.-+.|... .++++|+.+.... ....+|+++..||
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~--~~~~FDLIVSNPP 328 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMP--SEGKWDIIVSNPP 328 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccc--cCCCccEEEECCC
Confidence 4899999999999988875422 12589999999999999988642 2456777553211 1125999999998
No 74
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.07 E-value=0.19 Score=44.41 Aligned_cols=113 Identities=16% Similarity=0.064 Sum_probs=69.7
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..-++||+.||.|.++..+...+-. ..+.++|+++.+++..+.|... .++.+|+.. .+.+ .+|+++.+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~----~~~~-~~D~v~~~ 104 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI----ELPG-KADAIFIG 104 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh----hcCc-CCCEEEEC
Confidence 3458999999999999998876432 2599999999999988887632 234455431 2222 58999864
Q ss_pred CCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCc-EEEEeccccccChHHHHHHHHHHHhCCce
Q 016377 85 PPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPH-MLFVENVVGFETSDTHAKMIEILANSDYL 151 (390)
Q Consensus 85 ~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~-~~~~ENV~~~~~~~~~~~~~~~l~~~GY~ 151 (390)
.. ...-..++....+. + +|. .++++.+ .......+.+.+++.||.
T Consensus 105 ~~-------------~~~~~~~l~~~~~~---L--k~gG~lv~~~~----~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 105 GS-------------GGNLTAIIDWSLAH---L--HPGGRLVLTFI----LLENLHSALAHLEKCGVS 150 (187)
T ss_pred CC-------------ccCHHHHHHHHHHh---c--CCCeEEEEEEe----cHhhHHHHHHHHHHCCCC
Confidence 21 01112233333343 3 343 3444332 123467788889999984
No 75
>PRK03612 spermidine synthase; Provisional
Probab=96.02 E-value=0.099 Score=54.07 Aligned_cols=148 Identities=15% Similarity=0.136 Sum_probs=95.8
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhc------------CC-CCeecCccccchhhhcccCc
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF------------GH-RPYQGNIQNLTAAELDMYGA 78 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~------------~~-~~~~~di~~~~~~~~~~~~~ 78 (390)
.-+|+++.+|.|+....+.+.+- .+.+.++|+|+..++..+.|+ |. +++.+|..+.-.. ..+ .+
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-~~~-~f 374 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-LAE-KF 374 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-CCC-CC
Confidence 45899999999999887776542 248999999999999988852 11 2466777765322 122 59
Q ss_pred cEEEeCCCCchhhhccCCCCCCChhhhhH-HHHHHhcccccCCCcEEEEeccc-cccChHHHHHHHHHHHhCCceeEEEE
Q 016377 79 HAWLLSPPCQPYTRQGLQKQSSDARAFSF-LKILELIPHTVKPPHMLFVENVV-GFETSDTHAKMIEILANSDYLTQEFI 156 (390)
Q Consensus 79 D~l~~g~PCq~fS~~g~~~~~~d~r~~l~-~~~~~~i~~~~~~P~~~~~ENV~-~~~~~~~~~~~~~~l~~~GY~~~~~~ 156 (390)
|+|+..+|-.. +. + .+.|+ .++++.+... .+|.=+++=|.. .....+.+..+.+.+++.|+.+....
T Consensus 375 DvIi~D~~~~~----~~-----~-~~~L~t~ef~~~~~~~-L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~~~~ 443 (521)
T PRK03612 375 DVIIVDLPDPS----NP-----A-LGKLYSVEFYRLLKRR-LAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATTPYH 443 (521)
T ss_pred CEEEEeCCCCC----Cc-----c-hhccchHHHHHHHHHh-cCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEEEEE
Confidence 99999876321 10 0 01122 2344333332 167655554443 34445678899999999999766666
Q ss_pred eCCCCcCCCccCcEEEEEEEeC
Q 016377 157 LSPLQFGVPYSRPRYFCLAKRK 178 (390)
Q Consensus 157 l~a~~~G~pq~R~R~~~i~~~~ 178 (390)
.+-..|| ..-|++|++.
T Consensus 444 ~~vps~g-----~w~f~~as~~ 460 (521)
T PRK03612 444 VNVPSFG-----EWGFVLAGAG 460 (521)
T ss_pred eCCCCcc-----hhHHHeeeCC
Confidence 6666665 5778888764
No 76
>PRK01581 speE spermidine synthase; Validated
Probab=96.02 E-value=0.22 Score=48.70 Aligned_cols=151 Identities=12% Similarity=0.079 Sum_probs=93.4
Q ss_pred CceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhc------------CC-CCeecCccccchhhhcccC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNF------------GH-RPYQGNIQNLTAAELDMYG 77 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~------------~~-~~~~~di~~~~~~~~~~~~ 77 (390)
.-+||++=+|.|+....+.+. +. +.|.++|+|+..++.-+..+ |. .++.+|..++.... . ..
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v--~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-~-~~ 226 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETV--LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-S-SL 226 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCC--CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-C-CC
Confidence 348999999988765555543 33 38999999999888877521 11 23567877754321 2 25
Q ss_pred ccEEEeCCCCchhhhccCCCCCCChhhhhH-HHHHHhcccccCCCcEEEEecccc-ccChHHHHHHHHHHHhCCceeEEE
Q 016377 78 AHAWLLSPPCQPYTRQGLQKQSSDARAFSF-LKILELIPHTVKPPHMLFVENVVG-FETSDTHAKMIEILANSDYLTQEF 155 (390)
Q Consensus 78 ~D~l~~g~PCq~fS~~g~~~~~~d~r~~l~-~~~~~~i~~~~~~P~~~~~ENV~~-~~~~~~~~~~~~~l~~~GY~~~~~ 155 (390)
+|+|+..+| .+ .+ ...+.|+ .++++.+... .+|.=+++=+... ......+..+.+.|++.|+.+...
T Consensus 227 YDVIIvDl~-DP---~~------~~~~~LyT~EFy~~~~~~-LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 227 YDVIIIDFP-DP---AT------ELLSTLYTSELFARIATF-LTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred ccEEEEcCC-Cc---cc------cchhhhhHHHHHHHHHHh-cCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 999998865 10 11 1112334 3455444443 2676544433322 222235667889999999988877
Q ss_pred EeCCCCcCCCccCcEEEEEEEeCCCc
Q 016377 156 ILSPLQFGVPYSRPRYFCLAKRKPLS 181 (390)
Q Consensus 156 ~l~a~~~G~pq~R~R~~~i~~~~~~~ 181 (390)
......||.. ..|.+|++....
T Consensus 296 ~t~vPsyg~~----WgF~~as~~~~~ 317 (374)
T PRK01581 296 HTIVPSFGTD----WGFHIAANSAYV 317 (374)
T ss_pred EEecCCCCCc----eEEEEEeCCccc
Confidence 6666677652 889999886543
No 77
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.95 E-value=0.014 Score=56.92 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=63.9
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-----CCeecCccccchhhhcccCccEEEeCCCCc
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-----RPYQGNIQNLTAAELDMYGAHAWLLSPPCQ 88 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-----~~~~~di~~~~~~~~~~~~~D~l~~g~PCq 88 (390)
+|+||.||.|.++..+...+-. ..|.++|+++.|++.-+.|... .++..|+.+ .+.+ .+|+|+..||=.
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~----~~~~-~fDlIvsNPPFH 272 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS----DIKG-RFDMIISNPPFH 272 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc----ccCC-CccEEEECCCcc
Confidence 7999999999999988876432 2599999999999888777643 234455533 2233 599999999832
Q ss_pred hhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEec
Q 016377 89 PYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVEN 128 (390)
Q Consensus 89 ~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~EN 128 (390)
. |... ..+....++.+..+.++. .-.++++-|
T Consensus 273 ~----g~~~-~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 273 D----GIQT-SLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred C----Cccc-cHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 1 1100 011123445555555443 456666666
No 78
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.88 E-value=0.015 Score=58.49 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=59.6
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC---C--C--eecCccccchhhhcccCccEEE
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH---R--P--YQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~---~--~--~~~di~~~~~~~~~~~~~D~l~ 82 (390)
..-+|+|+|||.||.+.-+.+. + . -.|+|+|+++..++..+.|... . + ..+|..+.... .....+|.++
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~-~-~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-~~~~~fD~Vl 314 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP-Q-AQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-AENEQFDRIL 314 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC-C-CeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc-ccccccCEEE
Confidence 3468999999999999888763 3 1 2699999999999999988742 1 2 23444433210 1222599999
Q ss_pred eCCCCchhhhccCC
Q 016377 83 LSPPCQPYTRQGLQ 96 (390)
Q Consensus 83 ~g~PCq~fS~~g~~ 96 (390)
..+||.++...++.
T Consensus 315 lDaPcSg~G~~~~~ 328 (426)
T TIGR00563 315 LDAPCSATGVIRRH 328 (426)
T ss_pred EcCCCCCCcccccC
Confidence 99999998876653
No 79
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.86 E-value=0.027 Score=55.21 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=68.1
Q ss_pred cCCCCCceEEeeecCchhHHHHHHhcCCC-ccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCcc
Q 016377 7 KNDGEAWRVLEFYSGIGGMRYSLMKADVS-AQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAH 79 (390)
Q Consensus 7 ~~~~~~~~~~dlF~G~Gg~~~g~~~aG~~-~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D 79 (390)
.+....-+|+|+||+.||=+.=+.++.-+ ..+|+|+|++++-.+....|... .++..|-+.+.........+|
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCc
Confidence 35566689999999999999988887543 34689999999999999999753 245566655543222221399
Q ss_pred EEEeCCCCchhhhccCCC
Q 016377 80 AWLLSPPCQPYTRQGLQK 97 (390)
Q Consensus 80 ~l~~g~PCq~fS~~g~~~ 97 (390)
.+..-+||.+.-...+.-
T Consensus 232 ~iLlDaPCSg~G~irr~P 249 (355)
T COG0144 232 RILLDAPCSGTGVIRRDP 249 (355)
T ss_pred EEEECCCCCCCcccccCc
Confidence 999999999988876643
No 80
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.86 E-value=0.25 Score=46.50 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=88.0
Q ss_pred CCCCCceEEeeecCchhHHHHHHhcC-CCccEEEEEcccHHHHHHHHHhcCC----------CCeecCccccchhhhccc
Q 016377 8 NDGEAWRVLEFYSGIGGMRYSLMKAD-VSAQVVEAFDINDKANDVYELNFGH----------RPYQGNIQNLTAAELDMY 76 (390)
Q Consensus 8 ~~~~~~~~~dlF~G~Gg~~~g~~~aG-~~~~~v~a~e~~~~a~~~~~~n~~~----------~~~~~di~~~~~~~~~~~ 76 (390)
....+ +||++.+|.|++...+...+ .. .+.++|+|+..++..+.+++. .++.+|..+.-.. .. .
T Consensus 70 ~~~p~-~VL~iG~G~G~~~~~ll~~~~~~--~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~-~~-~ 144 (270)
T TIGR00417 70 HPNPK-HVLVIGGGDGGVLREVLKHKSVE--KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD-TE-N 144 (270)
T ss_pred CCCCC-EEEEEcCCchHHHHHHHhCCCcc--eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh-CC-C
Confidence 33444 99999999999887776554 44 799999999999888887753 1233444432211 12 2
Q ss_pred CccEEEeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccc-cccChHHHHHHHHHHHhCCceeEEE
Q 016377 77 GAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVV-GFETSDTHAKMIEILANSDYLTQEF 155 (390)
Q Consensus 77 ~~D~l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~-~~~~~~~~~~~~~~l~~~GY~~~~~ 155 (390)
.+|+|+..++-. . +. ...-...++++.+..+ .+|.=+++=|.. .......+..+.+.|.+..=.+...
T Consensus 145 ~yDvIi~D~~~~-~---~~------~~~l~~~ef~~~~~~~-L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~ 213 (270)
T TIGR00417 145 TFDVIIVDSTDP-V---GP------AETLFTKEFYELLKKA-LNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYY 213 (270)
T ss_pred CccEEEEeCCCC-C---Cc------ccchhHHHHHHHHHHH-hCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEE
Confidence 599999875421 1 11 1111123444333332 167655555544 3445567788888888765455444
Q ss_pred EeCCCCcCCCccCcEEEEEEEe
Q 016377 156 ILSPLQFGVPYSRPRYFCLAKR 177 (390)
Q Consensus 156 ~l~a~~~G~pq~R~R~~~i~~~ 177 (390)
.....-|+. -...|++|++
T Consensus 214 ~~~vp~~~~---g~~~~~~as~ 232 (270)
T TIGR00417 214 TANIPTYPS---GLWTFTIGSK 232 (270)
T ss_pred EEEcCcccc---chhEEEEEEC
Confidence 333333322 2358888887
No 81
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=95.81 E-value=0.066 Score=47.78 Aligned_cols=127 Identities=12% Similarity=0.081 Sum_probs=76.7
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC-----C-CCeecCccccchhhhcccCccEEEeCC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG-----H-RPYQGNIQNLTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~-----~-~~~~~di~~~~~~~~~~~~~D~l~~g~ 85 (390)
+-+++|+-||.|.++..+....-+ ..+.++|+++..++.-+.+.. + .++++|+.++....++...+|.++..+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 458999999999999988876422 258999999988766555432 1 346788887654334433599999888
Q ss_pred CCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCC
Q 016377 86 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSD 149 (390)
Q Consensus 86 PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~G 149 (390)
|...+......+... ...++.++.++++. .-.+++.-+.. ..+..+++.|...+
T Consensus 96 pdpw~k~~h~~~r~~--~~~~l~~~~r~Lkp---gG~l~~~td~~-----~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 96 PDPWPKKRHNKRRIT--QPHFLKEYANVLKK---GGVIHFKTDNE-----PLFEDMLKVLSEND 149 (194)
T ss_pred CCcCCCCCccccccC--CHHHHHHHHHHhCC---CCEEEEEeCCH-----HHHHHHHHHHHhCC
Confidence 754433211111110 12344455555443 23444333332 24777788887766
No 82
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=95.81 E-value=0.14 Score=45.55 Aligned_cols=140 Identities=14% Similarity=0.047 Sum_probs=81.3
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCchhh
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQPYT 91 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~fS 91 (390)
.-+++|+.||.|.+..-+.+.+.. .+.++|+++.+++..+.+. -..+++|+.+... .+.+..+|+++.+...+.+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~-~~~~~~d~~~~l~-~~~~~sfD~Vi~~~~l~~~- 88 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARG-VNVIQGDLDEGLE-AFPDKSFDYVILSQTLQAT- 88 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcC-CeEEEEEhhhccc-ccCCCCcCEEEEhhHhHcC-
Confidence 348999999999999888655422 4689999998887765432 2456677765211 1233359999987654332
Q ss_pred hccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEec----------------------------cccccChHHHHHHHH
Q 016377 92 RQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVEN----------------------------VVGFETSDTHAKMIE 143 (390)
Q Consensus 92 ~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~EN----------------------------V~~~~~~~~~~~~~~ 143 (390)
.|. ..++.++.+... +-++.+-| .+.. .-...+.+.+
T Consensus 89 --------~d~-~~~l~e~~r~~~-----~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~ 153 (194)
T TIGR02081 89 --------RNP-EEILDEMLRVGR-----HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNI-HFCTIADFED 153 (194)
T ss_pred --------cCH-HHHHHHHHHhCC-----eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCc-ccCcHHHHHH
Confidence 121 223334443322 11111111 1110 0113567888
Q ss_pred HHHhCCceeEEEEeCCCCcCCCccCcEEE
Q 016377 144 ILANSDYLTQEFILSPLQFGVPYSRPRYF 172 (390)
Q Consensus 144 ~l~~~GY~~~~~~l~a~~~G~pq~R~R~~ 172 (390)
.+++.|+++.....-..+ |++.+.-|.|
T Consensus 154 ll~~~Gf~v~~~~~~~~~-~~~~~~~~~~ 181 (194)
T TIGR02081 154 LCGELNLRILDRAAFDVD-GRGGREVRWF 181 (194)
T ss_pred HHHHCCCEEEEEEEeccc-cccccccccC
Confidence 999999999887655544 5665554444
No 83
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.77 E-value=0.031 Score=44.01 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=58.3
Q ss_pred EEeeecCchhHHHHHHhc---CCCccEEEEEcccHHHHHHHHHhcC----C-CCeecCccccchhhhcccCccEEEe-CC
Q 016377 15 VLEFYSGIGGMRYSLMKA---DVSAQVVEAFDINDKANDVYELNFG----H-RPYQGNIQNLTAAELDMYGAHAWLL-SP 85 (390)
Q Consensus 15 ~~dlF~G~Gg~~~g~~~a---G~~~~~v~a~e~~~~a~~~~~~n~~----~-~~~~~di~~~~~~~~~~~~~D~l~~-g~ 85 (390)
|+||-||.|-....+... |.. ..+.++|+++.+.+..+.++. . ..++.|+.++.. .+..+|+++. +.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~---~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF---SDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH---HSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc---cCCCeeEEEEcCC
Confidence 689999999999999976 421 379999999999999888882 2 457899988742 3335999997 33
Q ss_pred CCchhhhccCCCCCCChhhhhHHHHHHhcc
Q 016377 86 PCQPYTRQGLQKQSSDARAFSFLKILELIP 115 (390)
Q Consensus 86 PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~ 115 (390)
..+-++ .++...++.++.++++
T Consensus 77 ~~~~~~--------~~~~~~ll~~~~~~l~ 98 (101)
T PF13649_consen 77 SLHHLS--------PEELEALLRRIARLLR 98 (101)
T ss_dssp GGGGSS--------HHHHHHHHHHHHHTEE
T ss_pred ccCCCC--------HHHHHHHHHHHHHHhC
Confidence 222222 2334556666666543
No 84
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=95.74 E-value=0.24 Score=48.23 Aligned_cols=144 Identities=12% Similarity=0.123 Sum_probs=88.5
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC---CCeecCccccchhhhcccCccEEEeCCC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH---RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~---~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
...+|||+-||.|..+..+.+. +-. .+.++|.++...+.-+.+.+. .++.+|+.++. +....+|+++....
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~--~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp---~~~~sFDvVIs~~~ 187 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAK--NVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLP---FPTDYADRYVSAGS 187 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCC---CCCCceeEEEEcCh
Confidence 4579999999999988887653 322 688999999988877776542 34667777653 22235999886432
Q ss_pred CchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccc-cc-cCh---------HHHHHHHHHHHhCCce-eEE
Q 016377 87 CQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVV-GF-ETS---------DTHAKMIEILANSDYL-TQE 154 (390)
Q Consensus 87 Cq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~-~~-~~~---------~~~~~~~~~l~~~GY~-~~~ 154 (390)
-.. ..|. ...+.++.++++. .-.+++++-+. .. ... ...+++.+.|++.||. +..
T Consensus 188 L~~---------~~d~-~~~L~e~~rvLkP---GG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 188 IEY---------WPDP-QRGIKEAYRVLKI---GGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred hhh---------CCCH-HHHHHHHHHhcCC---CcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 111 1222 2356777776664 45666666442 11 110 1246788999999995 455
Q ss_pred EEeCCCCcCCCccCcEEEE
Q 016377 155 FILSPLQFGVPYSRPRYFC 173 (390)
Q Consensus 155 ~~l~a~~~G~pq~R~R~~~ 173 (390)
..+....| --++|.-+++
T Consensus 255 ~~i~~~~~-~~~~~~~~~~ 272 (340)
T PLN02490 255 KRIGPKWY-RGVRRHGLIM 272 (340)
T ss_pred EEcChhhc-ccccccccee
Confidence 55555444 2344444433
No 85
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=95.71 E-value=0.025 Score=51.67 Aligned_cols=70 Identities=20% Similarity=0.132 Sum_probs=53.3
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcc--cCccEEE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDM--YGAHAWL 82 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~--~~~D~l~ 82 (390)
-.+++|||.=||.|-+|.-+.+.|+. |.|+|+.+.++++-+.--.+..+..|-...+.+++.. ..+|+++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~---VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGAS---VTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCe---eEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEE
Confidence 57899999999999999999999964 9999999999999876666544433333344444433 2689887
No 86
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=95.62 E-value=0.021 Score=54.44 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=54.4
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEeC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
.-+|+|+-||.|.++.-+...+- .|.|+|+|+..++..+.++.. .++.+|+.+++ +. .+|++++.
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~---~~--~~d~VvaN 108 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE---FP--YFDVCVAN 108 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc---cc--ccCEEEec
Confidence 45799999999999999988764 489999999999998887631 35788887764 33 37999999
Q ss_pred CC
Q 016377 85 PP 86 (390)
Q Consensus 85 ~P 86 (390)
+|
T Consensus 109 lP 110 (294)
T PTZ00338 109 VP 110 (294)
T ss_pred CC
Confidence 88
No 87
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.59 E-value=0.039 Score=49.74 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=52.5
Q ss_pred CceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-CCeecCccccchhhhcccCccEEEeC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
.-+|||+-||.|-....+... +.. .+.++|+++.+++..+.+++. .++++|+.+ .++...+|+++.+
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~--~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~----~~~~~sfD~V~~~ 112 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFK--HIYGVEINEYAVEKAKAYLPNINIIQGSLFD----PFKDNFFDLVLTK 112 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCC--eEEEEECCHHHHHHHHhhCCCCcEEEeeccC----CCCCCCEEEEEEC
Confidence 447999999999999999875 433 699999999999999998876 456778766 2333359999854
No 88
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.58 E-value=0.1 Score=50.30 Aligned_cols=135 Identities=17% Similarity=0.134 Sum_probs=89.5
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC----C--Cee-cCccccchhhhcccCccEEEeCCC
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH----R--PYQ-GNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~----~--~~~-~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
.++|=|||.||+-+-..-.|.. ++++|+|...+.=-+.|+.. . ... .|++++. +++..+|.|+.-||
T Consensus 200 ~vlDPFcGTGgiLiEagl~G~~---viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp---l~~~~vdaIatDPP 273 (347)
T COG1041 200 LVLDPFCGTGGILIEAGLMGAR---VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP---LRDNSVDAIATDPP 273 (347)
T ss_pred EeecCcCCccHHHHhhhhcCce---EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC---CCCCccceEEecCC
Confidence 7999999999998888888875 77889999999888888754 1 233 3888875 66545999999999
Q ss_pred CchhhhccCCCCCCCh-hhhhHHHHHHhcccccCCC-cEEEE-eccccccChHHHHHHHHHHHhCCceeEEEEeCCCCcC
Q 016377 87 CQPYTRQGLQKQSSDA-RAFSFLKILELIPHTVKPP-HMLFV-ENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFG 163 (390)
Q Consensus 87 Cq~fS~~g~~~~~~d~-r~~l~~~~~~~i~~~~~~P-~~~~~-ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~a~~~G 163 (390)
-|+....... -..|+.++++-+... .++ -+++| -. ......++++||.+...+-.-
T Consensus 274 ------YGrst~~~~~~l~~Ly~~~le~~~ev-Lk~gG~~vf~~p----------~~~~~~~~~~~f~v~~~~~~~---- 332 (347)
T COG1041 274 ------YGRSTKIKGEGLDELYEEALESASEV-LKPGGRIVFAAP----------RDPRHELEELGFKVLGRFTMR---- 332 (347)
T ss_pred ------CCcccccccccHHHHHHHHHHHHHHH-hhcCcEEEEecC----------CcchhhHhhcCceEEEEEEEe----
Confidence 5554333322 367888887766665 234 22222 22 233466888999887665433
Q ss_pred CCccCcEEEEEE
Q 016377 164 VPYSRPRYFCLA 175 (390)
Q Consensus 164 ~pq~R~R~~~i~ 175 (390)
+-++=.|.|.|.
T Consensus 333 ~H~sLtR~i~v~ 344 (347)
T COG1041 333 VHGSLTRVIYVV 344 (347)
T ss_pred ecCceEEEEEEE
Confidence 223334555543
No 89
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=95.56 E-value=0.037 Score=50.18 Aligned_cols=135 Identities=13% Similarity=0.173 Sum_probs=96.9
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhc-C----C---CCeecCccccchhhhcccCccEEE
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF-G----H---RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~-~----~---~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
..-+|+|-|-|.|=.++..-..|.. .|..+|.|++-.+.-..|= . + .++.+|+.++-. ++.+..+|+|+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~-~~~D~sfDaIi 210 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVK-DFDDESFDAII 210 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHh-cCCccccceEe
Confidence 4568999999999999999999965 7999999998877666651 1 1 457889888764 46665799999
Q ss_pred eCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEecccccc-Ch-HHHHHHHHHHHhCCceeEEEEeC
Q 016377 83 LSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFE-TS-DTHAKMIEILANSDYLTQEFILS 158 (390)
Q Consensus 83 ~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~-~~-~~~~~~~~~l~~~GY~~~~~~l~ 158 (390)
--|| -||.||. +-. -.++.++.|+++. .-..|-----||-. .+ +....+.+.|.+.|+.+-.++.-
T Consensus 211 HDPP--RfS~Age---LYs--eefY~El~RiLkr---gGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 211 HDPP--RFSLAGE---LYS--EEFYRELYRILKR---GGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred eCCC--ccchhhh---HhH--HHHHHHHHHHcCc---CCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehh
Confidence 9999 6887773 211 2467888887775 34555444445532 22 25678899999999986555543
No 90
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.44 E-value=0.04 Score=51.67 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=60.5
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC----CCeecCccccchhhhcccCccEEEeCCC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH----RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~----~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
..-.|+|+.+|.|.++..|.+.| + -+.++|+|+.-++.++..+.. .++.+|+.+++...........++|..|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~-~--~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG-K--RVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLP 106 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS-S--EEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEEET
T ss_pred CCCEEEEeCCCCccchhhHhccc-C--cceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEEec
Confidence 56889999999999999999998 4 799999999999999998862 4688999999765533234778888888
No 91
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.43 E-value=0.042 Score=51.00 Aligned_cols=70 Identities=17% Similarity=0.053 Sum_probs=55.2
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-CCeecCccccchhhhcccCccEEEeCCC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
..-+|||+-||.|.++.-+...|. .+.++|+++.+++..+.+.+. ..+++|+.++. +.+..+|+++...+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~---~~~~~fD~V~s~~~ 112 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLP---LATATFDLAWSNLA 112 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCc---CCCCcEEEEEECch
Confidence 346799999999999988887774 599999999999998888764 45778988764 33335999986644
No 92
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=95.41 E-value=0.034 Score=56.43 Aligned_cols=84 Identities=19% Similarity=0.164 Sum_probs=62.1
Q ss_pred CCCCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEE
Q 016377 9 DGEAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAW 81 (390)
Q Consensus 9 ~~~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l 81 (390)
....-+|||+|||.||-|.-+.+. +-+. .|+|+|+++.-++..+.|... .+.+.|..++... ++. .+|.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g-~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~-~~~-~fD~I 187 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQG-AIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA-LPE-TFDAI 187 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh-chh-hcCeE
Confidence 345678999999999999888764 1111 799999999999999999743 2345666655332 233 49999
Q ss_pred EeCCCCchhhhccC
Q 016377 82 LLSPPCQPYTRQGL 95 (390)
Q Consensus 82 ~~g~PCq~fS~~g~ 95 (390)
..-.||.+.-...+
T Consensus 188 LvDaPCSG~G~~rk 201 (470)
T PRK11933 188 LLDAPCSGEGTVRK 201 (470)
T ss_pred EEcCCCCCCccccc
Confidence 99999998866654
No 93
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=95.38 E-value=0.11 Score=39.59 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=61.6
Q ss_pred EeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCC---CeecCccccchhhhcccCccEEEeCCCCchhhh
Q 016377 16 LEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHR---PYQGNIQNLTAAELDMYGAHAWLLSPPCQPYTR 92 (390)
Q Consensus 16 ~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~---~~~~di~~~~~~~~~~~~~D~l~~g~PCq~fS~ 92 (390)
||+=||.|-.+..+.+.+.. .++++|+++.+.+..+.+.... ...+|+.++. +++..+|+++...=++-+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~--~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~---~~~~sfD~v~~~~~~~~~-- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA--SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLP---FPDNSFDVVFSNSVLHHL-- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC--EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSS---S-TT-EEEEEEESHGGGS--
T ss_pred CEecCcCCHHHHHHHhccCC--EEEEEeCCHHHHHHHHhcccccCchheeehHHhCc---cccccccccccccceeec--
Confidence 68889999999999998433 7999999999999999998764 6788888883 444469999865433322
Q ss_pred ccCCCCCCChhhhhHHHHHHhccc
Q 016377 93 QGLQKQSSDARAFSFLKILELIPH 116 (390)
Q Consensus 93 ~g~~~~~~d~r~~l~~~~~~~i~~ 116 (390)
++....+.++.|+++.
T Consensus 74 --------~~~~~~l~e~~rvLk~ 89 (95)
T PF08241_consen 74 --------EDPEAALREIYRVLKP 89 (95)
T ss_dssp --------SHHHHHHHHHHHHEEE
T ss_pred --------cCHHHHHHHHHHHcCc
Confidence 4455667777776653
No 94
>PRK04148 hypothetical protein; Provisional
Probab=95.35 E-value=0.091 Score=43.89 Aligned_cols=69 Identities=17% Similarity=0.115 Sum_probs=55.0
Q ss_pred CceEEeeecCchh-HHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCC
Q 016377 12 AWRVLEFYSGIGG-MRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 12 ~~~~~dlF~G~Gg-~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
..+++|+=+|.|. ++.-|.+.|++ |.|+|+++.|++..+.+. ...+.+|+.+-+.+--. .+|++-..-|
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~---ViaIDi~~~aV~~a~~~~-~~~v~dDlf~p~~~~y~--~a~liysirp 86 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFD---VIVIDINEKAVEKAKKLG-LNAFVDDLFNPNLEIYK--NAKLIYSIRP 86 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCE---EEEEECCHHHHHHHHHhC-CeEEECcCCCCCHHHHh--cCCEEEEeCC
Confidence 4789999999886 88899999985 999999999999887764 36677899987765444 3888876544
No 95
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.33 E-value=0.039 Score=54.42 Aligned_cols=102 Identities=17% Similarity=0.149 Sum_probs=63.9
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC----C-----CCeecCccccchhhhcccCccEEEe
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG----H-----RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~----~-----~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
-+|+||.||.|-+++.+...+-+ -.|.++|+++.|++.-+.|.. + .++..|+.+ .+....+|+|+.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~----~~~~~~fDlIls 304 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS----GVEPFRFNAVLC 304 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc----cCCCCCEEEEEE
Confidence 38999999999999988876422 158999999999999888762 2 123344432 122225999999
Q ss_pred CCCCchhhhccCCCCCCC-hhhhhHHHHHHhcccccCCCcEEEEec
Q 016377 84 SPPCQPYTRQGLQKQSSD-ARAFSFLKILELIPHTVKPPHMLFVEN 128 (390)
Q Consensus 84 g~PCq~fS~~g~~~~~~d-~r~~l~~~~~~~i~~~~~~P~~~~~EN 128 (390)
.||.-. +. ...+ ....+|.+..+.++. .-+++++-|
T Consensus 305 NPPfh~----~~--~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~n 341 (378)
T PRK15001 305 NPPFHQ----QH--ALTDNVAWEMFHHARRCLKI---NGELYIVAN 341 (378)
T ss_pred CcCccc----Cc--cCCHHHHHHHHHHHHHhccc---CCEEEEEEe
Confidence 999521 11 1122 223445555555444 456666644
No 96
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=95.28 E-value=0.026 Score=52.33 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=50.9
Q ss_pred eEEeeecCchhHHHHHHh-cCCCccEEEEEcccHHHHHHHHHhcCC-----C--Ce----ecCccccchhhhcccCccEE
Q 016377 14 RVLEFYSGIGGMRYSLMK-ADVSAQVVEAFDINDKANDVYELNFGH-----R--PY----QGNIQNLTAAELDMYGAHAW 81 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~-aG~~~~~v~a~e~~~~a~~~~~~n~~~-----~--~~----~~di~~~~~~~~~~~~~D~l 81 (390)
.++|+|||.|.+|+++.. .+-. ++.|+|..+.|+..-..|-.. . ++ ..|..+ +..+.....|+|
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~--~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~--~~~l~~~~~dll 226 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQC--TVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASD--EHPLLEGKIDLL 226 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCc--eEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccc--ccccccCceeEE
Confidence 599999999999999875 3422 799999999999999999653 1 12 223322 222333469999
Q ss_pred EeCCCC
Q 016377 82 LLSPPC 87 (390)
Q Consensus 82 ~~g~PC 87 (390)
+..||-
T Consensus 227 vsNPPY 232 (328)
T KOG2904|consen 227 VSNPPY 232 (328)
T ss_pred ecCCCc
Confidence 999993
No 97
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.25 E-value=0.044 Score=49.74 Aligned_cols=74 Identities=14% Similarity=0.015 Sum_probs=52.0
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..-+|||+.||.|.++.-+....-.--.|+++|+++...+.-+.|... .++.+|..+.... . ..+|+++.+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~--~~fD~Ii~~ 153 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-L--APYDRIYVT 153 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-c--CCCCEEEEc
Confidence 456899999999999988876532111499999999999888777642 2356777654221 1 249999987
Q ss_pred CCC
Q 016377 85 PPC 87 (390)
Q Consensus 85 ~PC 87 (390)
+++
T Consensus 154 ~~~ 156 (215)
T TIGR00080 154 AAG 156 (215)
T ss_pred CCc
Confidence 654
No 98
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=95.19 E-value=0.088 Score=47.09 Aligned_cols=68 Identities=21% Similarity=0.128 Sum_probs=50.5
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..-+|||+-||.|..+.-|.+.|++ |.++|+++.+++..+.+... ..+..|+.++. +.+ .+|+++..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~---V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~-~fD~I~~~ 102 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFD---VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT---FDG-EYDFILST 102 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC---cCC-CcCEEEEe
Confidence 3468999999999999999998864 89999999998887766432 23456666553 233 48988865
Q ss_pred C
Q 016377 85 P 85 (390)
Q Consensus 85 ~ 85 (390)
.
T Consensus 103 ~ 103 (197)
T PRK11207 103 V 103 (197)
T ss_pred c
Confidence 3
No 99
>PLN02244 tocopherol O-methyltransferase
Probab=95.13 E-value=0.35 Score=47.20 Aligned_cols=100 Identities=10% Similarity=0.045 Sum_probs=65.2
Q ss_pred CCCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcC-----C--CCeecCccccchhhhcccCccEE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFG-----H--RPYQGNIQNLTAAELDMYGAHAW 81 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~-----~--~~~~~di~~~~~~~~~~~~~D~l 81 (390)
...-+|||+.||.|+++.-+... |. .|.++|+++..++.-+.+.. . ..+.+|+.++. ++...+|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~---~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP---FEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC---CCCCCccEE
Confidence 34568999999999999988875 54 48899999998877666532 1 24567887763 333359999
Q ss_pred EeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEec
Q 016377 82 LLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVEN 128 (390)
Q Consensus 82 ~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~EN 128 (390)
+...- .....| +..++.++.++++- .-.+++.+.
T Consensus 191 ~s~~~---------~~h~~d-~~~~l~e~~rvLkp---GG~lvi~~~ 224 (340)
T PLN02244 191 WSMES---------GEHMPD-KRKFVQELARVAAP---GGRIIIVTW 224 (340)
T ss_pred EECCc---------hhccCC-HHHHHHHHHHHcCC---CcEEEEEEe
Confidence 86321 111223 33456677776654 345666553
No 100
>PRK05785 hypothetical protein; Provisional
Probab=95.11 E-value=0.12 Score=47.41 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=64.4
Q ss_pred CceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCchh
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQPY 90 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~f 90 (390)
.-+|||+.||.|-.+..+... |. .|.++|+++..++.-+... ..+++|..++. +++..+|+++.+.-..
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp---~~d~sfD~v~~~~~l~-- 121 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVAD--DKVVGSFEALP---FRDKSFDVVMSSFALH-- 121 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhcc--ceEEechhhCC---CCCCCEEEEEecChhh--
Confidence 568999999999999888887 43 5999999999988765542 34677887764 3344699999875321
Q ss_pred hhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEe
Q 016377 91 TRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVE 127 (390)
Q Consensus 91 S~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~E 127 (390)
...|. ...+.++.|++ +|.+.++|
T Consensus 122 -------~~~d~-~~~l~e~~RvL-----kp~~~ile 145 (226)
T PRK05785 122 -------ASDNI-EKVIAEFTRVS-----RKQVGFIA 145 (226)
T ss_pred -------ccCCH-HHHHHHHHHHh-----cCceEEEE
Confidence 22332 34566666643 46565665
No 101
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=95.03 E-value=0.1 Score=47.30 Aligned_cols=40 Identities=15% Similarity=0.037 Sum_probs=35.7
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHH
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYE 53 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~ 53 (390)
..-+|||+.||.|--..-|.+.|++ |.|+|+++.|++...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~---V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHR---VLGVELSEIAVEQFF 73 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCe---EEEEeCCHHHHHHHH
Confidence 3459999999999999999999986 999999999999753
No 102
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.95 E-value=0.042 Score=52.18 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=64.0
Q ss_pred CCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEE
Q 016377 9 DGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 9 ~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
....-+|+|+||+.||=+.-+.+.-..--.++|+|++.+.++....|... .++..|.++........ .+|.+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~-~fd~Vl 161 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPES-KFDRVL 161 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTT-TEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccccc-ccchhh
Confidence 44556799999999999988776533222799999999999999888642 12346666665443332 499999
Q ss_pred eCCCCchhhhccCC
Q 016377 83 LSPPCQPYTRQGLQ 96 (390)
Q Consensus 83 ~g~PCq~fS~~g~~ 96 (390)
.-.||.+.....+.
T Consensus 162 vDaPCSg~G~i~r~ 175 (283)
T PF01189_consen 162 VDAPCSGLGTIRRN 175 (283)
T ss_dssp EECSCCCGGGTTTC
T ss_pred cCCCccchhhhhhc
Confidence 99999998766653
No 103
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=94.93 E-value=0.12 Score=46.07 Aligned_cols=68 Identities=18% Similarity=0.056 Sum_probs=49.1
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-----CCeecCccccchhhhcccCccEEEeCCC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-----RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-----~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
..++||+=||.|..+.-+...|. .|.|+|+++.+++..+.+... .....|+... .+.+ .+|+++.+.+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~---~~~~-~fD~I~~~~~ 103 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAA---ALNE-DYDFIFSTVV 103 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhc---cccC-CCCEEEEecc
Confidence 46899999999999999998886 489999999999887665422 2233454433 2333 4898887655
No 104
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=94.92 E-value=0.36 Score=43.35 Aligned_cols=103 Identities=14% Similarity=0.146 Sum_probs=67.0
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC--C--CCeecCccccchhhhcccCccEEEeCCC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG--H--RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~--~--~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
...+++|+.||.|..+..+...+.....+.++|+++.+++.-+.+.+ . .++.+|+.++.. ....+|+++.+.-
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPF---EDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCC---CCCcEEEEEEeee
Confidence 46799999999999999998877421269999999999988888875 1 345678877642 2225999875321
Q ss_pred CchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEecc
Q 016377 87 CQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129 (390)
Q Consensus 87 Cq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV 129 (390)
- ....+ ...++..+.++++. .-.++++|..
T Consensus 116 ~---------~~~~~-~~~~l~~~~~~L~~---gG~l~~~~~~ 145 (223)
T TIGR01934 116 L---------RNVTD-IQKALREMYRVLKP---GGRLVILEFS 145 (223)
T ss_pred e---------CCccc-HHHHHHHHHHHcCC---CcEEEEEEec
Confidence 1 11122 22345555555443 4566666653
No 105
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=94.90 E-value=0.21 Score=46.05 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=76.0
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCCC------CeecCccccchhhhcccCccEEEe
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHR------PYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~~------~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
...+|||++||.|-+++.+.+. |-- .|.++|+++.=++.-+....+. .+.+|..++. +++..+|+++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g--~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP---f~D~sFD~vt~ 125 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTG--EVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP---FPDNSFDAVTI 125 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCc--eEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC---CCCCccCEEEe
Confidence 6789999999999999999875 522 6899999999988888887752 3688999885 56556999997
Q ss_pred CCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEecccc
Q 016377 84 SPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVG 131 (390)
Q Consensus 84 g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~ 131 (390)
++=-+ +.. +....+.|+.|.++- .-+++++|=-..
T Consensus 126 ~fglr---------nv~-d~~~aL~E~~RVlKp---gG~~~vle~~~p 160 (238)
T COG2226 126 SFGLR---------NVT-DIDKALKEMYRVLKP---GGRLLVLEFSKP 160 (238)
T ss_pred eehhh---------cCC-CHHHHHHHHHHhhcC---CeEEEEEEcCCC
Confidence 74322 222 334457888887765 457777775543
No 106
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=94.89 E-value=0.093 Score=45.25 Aligned_cols=84 Identities=13% Similarity=0.106 Sum_probs=71.1
Q ss_pred CCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-CCeecCccccc--hhhhcccCccEEEeCC
Q 016377 9 DGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLT--AAELDMYGAHAWLLSP 85 (390)
Q Consensus 9 ~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~--~~~~~~~~~D~l~~g~ 85 (390)
-...+.|+||=.|.|-++-+.-.-|..-+.+.++|.+++-...+...+|+ .++++|..++. ..+..+..+|.++-|.
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~l 125 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGL 125 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence 34568899999999999999999999888999999999999999999998 68899998887 2344444699999999
Q ss_pred CCchhhh
Q 016377 86 PCQPYTR 92 (390)
Q Consensus 86 PCq~fS~ 92 (390)
|--.|+.
T Consensus 126 Pll~~P~ 132 (194)
T COG3963 126 PLLNFPM 132 (194)
T ss_pred ccccCcH
Confidence 9666653
No 107
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.88 E-value=0.6 Score=40.93 Aligned_cols=134 Identities=19% Similarity=0.207 Sum_probs=78.9
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHH----HHHhcCC-CCeecCccccchhhhcccCccEEEeCCCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDV----YELNFGH-RPYQGNIQNLTAAELDMYGAHAWLLSPPC 87 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~----~~~n~~~-~~~~~di~~~~~~~~~~~~~D~l~~g~PC 87 (390)
--++|+=||.|-.+.-+.+.-......++.|++++|+++ -+.|--+ .+++.|+.+- +....+|+++..||=
T Consensus 45 ~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~----l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 45 EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG----LRNESVDVLVFNPPY 120 (209)
T ss_pred eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh----hccCCccEEEECCCc
Confidence 348999999999998888742223489999999999876 3333333 4566676653 233469999999995
Q ss_pred chhhhccC-----CC---CCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeEEE
Q 016377 88 QPYTRQGL-----QK---QSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEF 155 (390)
Q Consensus 88 q~fS~~g~-----~~---~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~ 155 (390)
-+-|--=. .. |-.|.|. ..-.++..+..+ ..|+=++.=++-. ++--+++++.++..||.+...
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~-v~d~ll~~v~~i-LSp~Gv~Ylv~~~---~N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGRE-VTDRLLPQVPDI-LSPRGVFYLVALR---ANKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHH-HHHHHHhhhhhh-cCcCceEEeeehh---hcCHHHHHHHHhhcccceeEE
Confidence 54442111 00 1112222 123334434433 1354444433322 223678888999999987543
No 108
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=94.85 E-value=0.065 Score=48.62 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=51.3
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
...-+++|+.||.|.++.-+...+. .+.++|+++.+++.-+.+.+. ....+|+.++. . .+|+++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~--~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC----G--EFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC----C--CcCEEE
Confidence 3467999999999999999988764 589999999999888887653 23456666653 2 489888
Q ss_pred eCC
Q 016377 83 LSP 85 (390)
Q Consensus 83 ~g~ 85 (390)
+..
T Consensus 125 ~~~ 127 (219)
T TIGR02021 125 CMD 127 (219)
T ss_pred Ehh
Confidence 643
No 109
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=94.77 E-value=0.078 Score=49.37 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=59.9
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC--C--CCeecCccccchhhhcccCccEEEeCCC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG--H--RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~--~--~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
.=+|+|.=+|.|+++.-+.+.+-. |.|+|+|+.-+..++..+. + .++.+|+-+++...+. ..+.++|..|
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~--~~~~vVaNlP 104 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA--QPYKVVANLP 104 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc--CCCEEEEcCC
Confidence 468999999999999999998864 9999999999999999975 2 5789999999765443 3788999988
No 110
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=94.76 E-value=0.085 Score=48.39 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=44.2
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCC--CeecCccccchhhh
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHR--PYQGNIQNLTAAEL 73 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~--~~~~di~~~~~~~~ 73 (390)
..-+++|+.||.|+++.-+.+.|.+ .|+|+|+.+.-...-....+.. .-..||+.++.+++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~ 137 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADI 137 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHc
Confidence 4558999999999999999999965 8999999997655433333431 23346776655554
No 111
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=94.74 E-value=0.071 Score=51.57 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=51.2
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEe
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
...++||+-||.|.++.-+...|. .|.++|.++..++..+.+... ..+++|+.++.. ....+|+++.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~---~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD---EGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh---ccCCCCEEEE
Confidence 456899999999999999988886 489999999999888766421 245667666532 2225999986
Q ss_pred C
Q 016377 84 S 84 (390)
Q Consensus 84 g 84 (390)
.
T Consensus 205 ~ 205 (322)
T PLN02396 205 L 205 (322)
T ss_pred h
Confidence 4
No 112
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.68 E-value=0.059 Score=50.23 Aligned_cols=71 Identities=14% Similarity=0.042 Sum_probs=54.4
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEe
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
...+|+|+-||.|..+..+...|.+ |.++|+++.+++..+.+... .++++|+.++.. .....+|+++.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~---v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~--~~~~~fD~V~~ 118 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQ---VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ--HLETPVDLILF 118 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh--hcCCCCCEEEe
Confidence 4569999999999999999999864 88999999999988877642 246778877643 22235999986
Q ss_pred CCC
Q 016377 84 SPP 86 (390)
Q Consensus 84 g~P 86 (390)
...
T Consensus 119 ~~v 121 (255)
T PRK11036 119 HAV 121 (255)
T ss_pred hhH
Confidence 533
No 113
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=94.67 E-value=0.26 Score=45.74 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=68.5
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEE
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
..-+|||+-||.|..+..+.+. ....-.+.++|+++.+++.-+.+... .++++|+.++. +. +.|+++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---~~--~~D~vv 130 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---IE--NASMVV 130 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---CC--CCCEEe
Confidence 3468999999999998877652 11112599999999999888888642 34677877663 23 378777
Q ss_pred eCCCCchhhhccCCCCC-CChhhhhHHHHHHhcccccCCCcEEEEecccc
Q 016377 83 LSPPCQPYTRQGLQKQS-SDARAFSFLKILELIPHTVKPPHMLFVENVVG 131 (390)
Q Consensus 83 ~g~PCq~fS~~g~~~~~-~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~ 131 (390)
.+.. +. .. .+++..++.++.+.++. .-.+++.|.+..
T Consensus 131 ~~~~---l~------~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~ 168 (247)
T PRK15451 131 LNFT---LQ------FLEPSERQALLDKIYQGLNP---GGALVLSEKFSF 168 (247)
T ss_pred hhhH---HH------hCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCC
Confidence 5422 11 11 13355677777776654 457888897754
No 114
>PRK06202 hypothetical protein; Provisional
Probab=94.60 E-value=0.3 Score=44.71 Aligned_cols=73 Identities=16% Similarity=0.073 Sum_probs=51.0
Q ss_pred CCCceEEeeecCchhHHHHHHh----cCCCccEEEEEcccHHHHHHHHHhcCC---CCeecCccccchhhhcccCccEEE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMK----ADVSAQVVEAFDINDKANDVYELNFGH---RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~----aG~~~~~v~a~e~~~~a~~~~~~n~~~---~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
....+++|+-||.|.++..+.. .|... .+.++|+++.+++.-+.+... .....|...+.. ....+|+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~---~~~~fD~V~ 134 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRL-EVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVA---EGERFDVVT 134 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCc-EEEEEcCCHHHHHHHHhccccCCCeEEEEecccccc---cCCCccEEE
Confidence 4557999999999999888764 35422 599999999999988877543 233444444432 223599999
Q ss_pred eCCC
Q 016377 83 LSPP 86 (390)
Q Consensus 83 ~g~P 86 (390)
.+.-
T Consensus 135 ~~~~ 138 (232)
T PRK06202 135 SNHF 138 (232)
T ss_pred ECCe
Confidence 8754
No 115
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.53 E-value=0.087 Score=54.24 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=77.5
Q ss_pred CceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEe
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
..+|+|++||.|.+++.+... .-. .+.++|+++.|++.-+.|... .++++|+.+. +....+|+++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~--~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~----~~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNA--NVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN----IEKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh----CcCCCccEEEE
Confidence 458999999999999887653 212 589999999999999988531 2355665432 22225999999
Q ss_pred CCCCchhhhccC-CCC--CCChh--------h-hhHHHHHHhcccccCCC-cEEEEeccccccChHHHHHHHHHHHhCCc
Q 016377 84 SPPCQPYTRQGL-QKQ--SSDAR--------A-FSFLKILELIPHTVKPP-HMLFVENVVGFETSDTHAKMIEILANSDY 150 (390)
Q Consensus 84 g~PCq~fS~~g~-~~~--~~d~r--------~-~l~~~~~~~i~~~~~~P-~~~~~ENV~~~~~~~~~~~~~~~l~~~GY 150 (390)
.||=-+.+.... ... ..++. + ..+..+++-+..+ .+| -++++| -|.- .-+.+.+.+.+.||
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~-L~~gG~l~lE--ig~~---q~~~v~~~~~~~g~ 286 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQF-LKPNGKIILE--IGFK---QEEAVTQIFLDHGY 286 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHh-ccCCCEEEEE--ECCc---hHHHHHHHHHhcCC
Confidence 999554433210 000 01111 1 1233333332222 134 367777 2332 35567777888898
Q ss_pred eeEE
Q 016377 151 LTQE 154 (390)
Q Consensus 151 ~~~~ 154 (390)
....
T Consensus 287 ~~~~ 290 (506)
T PRK01544 287 NIES 290 (506)
T ss_pred CceE
Confidence 6543
No 116
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.50 E-value=0.026 Score=49.86 Aligned_cols=76 Identities=17% Similarity=0.050 Sum_probs=54.6
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCc
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQ 88 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq 88 (390)
-...+||||.||.|-.+.+...+|-+ -|++.|+++++......|-...-+.-.+...+.-. ....+|++.+|--|=
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~~~~~Dl~LagDlfy 153 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEeeccccC-CCcceeEEEeeceec
Confidence 34578999999999999999999966 89999999999999998876533211222111111 222599999885543
No 117
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=94.48 E-value=0.59 Score=42.46 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=51.7
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEe
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
...+++|+.||.|.++.-+...+-....+.++|+++.+.+.-+.++.. .++.+|+.++. .....+|+++.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~I~~ 127 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP---FPDNSFDAVTI 127 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC---CCCCCccEEEE
Confidence 357999999999999999988773112799999999998888887643 23456776653 22225899875
Q ss_pred C
Q 016377 84 S 84 (390)
Q Consensus 84 g 84 (390)
+
T Consensus 128 ~ 128 (239)
T PRK00216 128 A 128 (239)
T ss_pred e
Confidence 3
No 118
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=94.45 E-value=0.19 Score=46.38 Aligned_cols=72 Identities=17% Similarity=-0.020 Sum_probs=49.8
Q ss_pred CceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhc---ccCccE
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELD---MYGAHA 80 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~---~~~~D~ 80 (390)
.-+++|+.+|+|..++.+..+ +- --.+.++|+++++.+.-+.|+.. .++.+|+.+.-+.... ...+|+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 458999999999877766653 21 11699999999999998888743 2456777765332111 125899
Q ss_pred EEeC
Q 016377 81 WLLS 84 (390)
Q Consensus 81 l~~g 84 (390)
++..
T Consensus 148 VfiD 151 (234)
T PLN02781 148 AFVD 151 (234)
T ss_pred EEEC
Confidence 8864
No 119
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=94.43 E-value=0.1 Score=50.37 Aligned_cols=76 Identities=18% Similarity=0.139 Sum_probs=50.0
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCC-e--------ecCccccchhhh-cccCcc
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP-Y--------QGNIQNLTAAEL-DMYGAH 79 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~-~--------~~di~~~~~~~~-~~~~~D 79 (390)
....++||+-||+|++..-+...-..+ .+.|+|+|+.|++.-+.|....+ + +.|..++....+ ....+|
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~-~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGW-RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCC-EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 356899999999998876654432223 48899999999999988864431 1 223322221111 122599
Q ss_pred EEEeCCC
Q 016377 80 AWLLSPP 86 (390)
Q Consensus 80 ~l~~g~P 86 (390)
+++..||
T Consensus 192 livcNPP 198 (321)
T PRK11727 192 ATLCNPP 198 (321)
T ss_pred EEEeCCC
Confidence 9999999
No 120
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=94.42 E-value=0.13 Score=46.90 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=35.2
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHH
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYE 53 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~ 53 (390)
.-+|||+.||.|--.+-|.+.|++ |.|+|+++.|++...
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~---V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHE---VLGVELSELAVEQFF 76 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCe---EEEEccCHHHHHHHH
Confidence 459999999999999999999986 999999999999764
No 121
>PRK00811 spermidine synthase; Provisional
Probab=94.42 E-value=0.65 Score=44.04 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=89.0
Q ss_pred CceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-----------CCeecCccccchhhhcccCcc
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-----------RPYQGNIQNLTAAELDMYGAH 79 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-----------~~~~~di~~~~~~~~~~~~~D 79 (390)
.-+||++.+|.|++..-+.+. +.+ .|.++|+|+..++..+.+++. .++.+|..++... ....+|
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yD 152 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFD 152 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCccc
Confidence 458999999999998877654 655 899999999999998887752 2466787765433 223599
Q ss_pred EEEeCCCCchhhhccCCCCCCChhhhhH-HHHHHhcccccCCCcEEEEecccc-ccChHHHHHHHHHHHhCCceeEEEEe
Q 016377 80 AWLLSPPCQPYTRQGLQKQSSDARAFSF-LKILELIPHTVKPPHMLFVENVVG-FETSDTHAKMIEILANSDYLTQEFIL 157 (390)
Q Consensus 80 ~l~~g~PCq~fS~~g~~~~~~d~r~~l~-~~~~~~i~~~~~~P~~~~~ENV~~-~~~~~~~~~~~~~l~~~GY~~~~~~l 157 (390)
+|+...+ .+++ .. ..|+ .++++.+... .+|.=+++=|+.. +.....+..+.+.|.+..-.+.....
T Consensus 153 vIi~D~~-dp~~---~~-------~~l~t~ef~~~~~~~-L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~ 220 (283)
T PRK00811 153 VIIVDST-DPVG---PA-------EGLFTKEFYENCKRA-LKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQA 220 (283)
T ss_pred EEEECCC-CCCC---ch-------hhhhHHHHHHHHHHh-cCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 9997642 1221 10 1121 3344333333 1676666656543 23445677788888877544443221
Q ss_pred CCCCcCCCcc--CcEEEEEEEeC
Q 016377 158 SPLQFGVPYS--RPRYFCLAKRK 178 (390)
Q Consensus 158 ~a~~~G~pq~--R~R~~~i~~~~ 178 (390)
. +|.- -...|++|++.
T Consensus 221 ~-----vp~~~~~~w~f~~as~~ 238 (283)
T PRK00811 221 A-----IPTYPSGLWSFTFASKN 238 (283)
T ss_pred E-----CCcccCchheeEEeecC
Confidence 1 2332 33567888764
No 122
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.41 E-value=0.057 Score=55.89 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=53.3
Q ss_pred CCceEEeeecCchhHHHHHHhcCC-----C--ccEEEEEcccHHHHHHHHHhcCC------CCeecCcccc----chhhh
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADV-----S--AQVVEAFDINDKANDVYELNFGH------RPYQGNIQNL----TAAEL 73 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~-----~--~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~----~~~~~ 73 (390)
...+++|.+||.|++-.++..... . -..++++|+|+.++...+.|... .+.+.|...- ..+..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 567999999999999998875321 1 13689999999999988888532 1233332211 11111
Q ss_pred cccCccEEEeCCCCchhh
Q 016377 74 DMYGAHAWLLSPPCQPYT 91 (390)
Q Consensus 74 ~~~~~D~l~~g~PCq~fS 91 (390)
. .+|+++|.||=-...
T Consensus 111 ~--~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 111 D--LFDIVITNPPYGRLK 126 (524)
T ss_pred C--cccEEEeCCCccccC
Confidence 2 599999999966543
No 123
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=94.37 E-value=1.1 Score=39.80 Aligned_cols=117 Identities=15% Similarity=0.029 Sum_probs=70.9
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeCC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g~ 85 (390)
..+++|+-||.|.+++.+..+.- ...|.++|.++.+++..+.|... .++.+|+.++.. . ..+|++++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---~-~~fDlV~~~~ 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---E-EKFDVVTSRA 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---C-CCccEEEEcc
Confidence 57899999999999988875321 12699999999888777666422 346778877643 2 2599999641
Q ss_pred CCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeEEEE
Q 016377 86 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFI 156 (390)
Q Consensus 86 PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~ 156 (390)
.. ....++.++.+.++. .-.+++++... .-..+.+..+.+|..+...+
T Consensus 121 -------------~~-~~~~~l~~~~~~Lkp---GG~lv~~~~~~------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 121 -------------VA-SLSDLVELCLPLLKP---GGRFLALKGRD------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred -------------cc-CHHHHHHHHHHhcCC---CeEEEEEeCCC------hHHHHHHHHHhcCceEeeeE
Confidence 11 112344445554443 34556554331 23334444455676665544
No 124
>PRK10742 putative methyltransferase; Provisional
Probab=94.35 E-value=0.056 Score=49.86 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=53.9
Q ss_pred CCCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCC---------------CeecCccccchhh
Q 016377 8 NDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHR---------------PYQGNIQNLTAAE 72 (390)
Q Consensus 8 ~~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~---------------~~~~di~~~~~~~ 72 (390)
.+....+|||+|||.|..++=+...|.+ |.++|.++.++...+.|.... ++.+|..++-..
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~- 160 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD- 160 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh-
Confidence 3455679999999999999999999964 999999999999888886531 122333332211
Q ss_pred hcccCccEEEeCCC
Q 016377 73 LDMYGAHAWLLSPP 86 (390)
Q Consensus 73 ~~~~~~D~l~~g~P 86 (390)
... .+|+|..-||
T Consensus 161 ~~~-~fDVVYlDPM 173 (250)
T PRK10742 161 ITP-RPQVVYLDPM 173 (250)
T ss_pred CCC-CCcEEEECCC
Confidence 222 5999999998
No 125
>PLN02672 methionine S-methyltransferase
Probab=94.32 E-value=0.069 Score=59.19 Aligned_cols=161 Identities=14% Similarity=0.073 Sum_probs=93.4
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC----------------------CCeecCccccch
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH----------------------RPYQGNIQNLTA 70 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~----------------------~~~~~di~~~~~ 70 (390)
.+|+||.||.|.+++.+....-. ..|.|+|+++.|++.-+.|... .++++|+.+...
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 48999999999999998876421 2699999999999999888631 235567654321
Q ss_pred hhhcccCccEEEeCCCCchhhhc---c--C--------------CCCC----CChhh-hhHHHHHHhcccccCCCc-EEE
Q 016377 71 AELDMYGAHAWLLSPPCQPYTRQ---G--L--------------QKQS----SDARA-FSFLKILELIPHTVKPPH-MLF 125 (390)
Q Consensus 71 ~~~~~~~~D~l~~g~PCq~fS~~---g--~--------------~~~~----~d~r~-~l~~~~~~~i~~~~~~P~-~~~ 125 (390)
. . ...+|+|+..||=-.-+.. - . ...+ .|+.+ .++..++.-...+ .+|. +++
T Consensus 199 ~-~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~-L~pgG~l~ 275 (1082)
T PLN02672 199 D-N-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISV-IKPMGIMI 275 (1082)
T ss_pred c-c-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHh-ccCCCEEE
Confidence 1 1 1149999999993222210 0 0 0011 11222 2334444333322 1554 555
Q ss_pred EeccccccChHHHHHHH-HHHHhCCcee----EEEEeCCCCcCCC-------ccCcEE-EEEEEeCCCcc
Q 016377 126 VENVVGFETSDTHAKMI-EILANSDYLT----QEFILSPLQFGVP-------YSRPRY-FCLAKRKPLSF 182 (390)
Q Consensus 126 ~ENV~~~~~~~~~~~~~-~~l~~~GY~~----~~~~l~a~~~G~p-------q~R~R~-~~i~~~~~~~~ 182 (390)
||-=. ..-+.++ +.|++.||.. +.+|+.|+|--+- .+|.|+ |+.+...+.++
T Consensus 276 lEiG~-----~q~~~v~~~l~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1082)
T PLN02672 276 FNMGG-----RPGQAVCERLFERRGFRITKLWQTKINQAADTDISALVEIEKNSRHRFEFFMGLVGDQPI 340 (1082)
T ss_pred EEECc-----cHHHHHHHHHHHHCCCCeeEEeeehhhhccccchHHHHHHhhcCccceeeeeccCCCCch
Confidence 55321 1245566 4778899864 4568899987642 345554 55566555433
No 126
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=94.30 E-value=0.34 Score=44.02 Aligned_cols=74 Identities=16% Similarity=0.090 Sum_probs=56.1
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC--CCeecCccccchhhhcccCccEEEeCCCCc
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH--RPYQGNIQNLTAAELDMYGAHAWLLSPPCQ 88 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~--~~~~~di~~~~~~~~~~~~~D~l~~g~PCq 88 (390)
...+|||+-||.|.++.-+...+.. ..+.++|+++..++..+.+.+. ..+.+|+.+... ....+|+++....++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPL---EDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCC---CCCceeEEEEhhhhh
Confidence 3478999999999999999888754 2489999999999888777764 346778877642 223599999776544
No 127
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=94.24 E-value=0.079 Score=46.80 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=48.5
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhc-----CC-CCeecCccccchhhhcccCccEEEeC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF-----GH-RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~-----~~-~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..+++|+.||.|.+++-+...+-. ..|.++|.++.+++..+.|. .+ .++++|+.++.. ...+|+++..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~----~~~fD~I~s~ 116 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH----EEQFDVITSR 116 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc----cCCccEEEeh
Confidence 568999999999988887665432 25999999998776665553 12 346788887632 2259998864
No 128
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=94.24 E-value=0.15 Score=41.22 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=47.4
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
-+++|+.||.|.++.-+.+..-. ..+.++|.++.+++.-+.|... .++.+|+.+.... ..+ .+|+++.+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~D~v~~~ 95 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-SLP-EPDRVFIG 95 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-hcC-CCCEEEEC
Confidence 48999999999999988775211 2689999999998887766421 2345666543221 222 59999874
No 129
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=94.04 E-value=0.79 Score=40.43 Aligned_cols=113 Identities=20% Similarity=0.209 Sum_probs=74.5
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeCCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
-.++|.=||+|+.++-+..+|-. --|+|+|-|+.|+++.+.|... .++.+|.-+... +++ ++|.++.|
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~p~-~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-~~~--~~daiFIG-- 109 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAGPS-GRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP-DLP--SPDAIFIG-- 109 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-CCC--CCCEEEEC--
Confidence 37899999999999888876653 3599999999999999999643 234555555432 222 48888855
Q ss_pred CchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCce
Q 016377 87 CQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYL 151 (390)
Q Consensus 87 Cq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~ 151 (390)
| ..+. ..++..... .+ +|-=-++-|+..+ .+...+++.|+++|+.
T Consensus 110 -------G-g~~i----~~ile~~~~---~l--~~ggrlV~naitl---E~~~~a~~~~~~~g~~ 154 (187)
T COG2242 110 -------G-GGNI----EEILEAAWE---RL--KPGGRLVANAITL---ETLAKALEALEQLGGR 154 (187)
T ss_pred -------C-CCCH----HHHHHHHHH---Hc--CcCCeEEEEeecH---HHHHHHHHHHHHcCCc
Confidence 1 1111 223333333 34 5655566666555 3477788999999993
No 130
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.01 E-value=0.19 Score=47.68 Aligned_cols=67 Identities=18% Similarity=0.102 Sum_probs=49.4
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-----CCeecCccccchhhhcccCccEEEeCCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-----RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-----~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
-+|||+-||.|..+.-+...|++ |.|+|+++.+++..+.+... .....|+.+. .+.+ .+|+++....
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~---V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~---~~~~-~fD~I~~~~v 193 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFD---VTAVDINQQSLENLQEIAEKENLNIRTGLYDINSA---SIQE-EYDFILSTVV 193 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHHcCCceEEEEechhcc---cccC-CccEEEEcch
Confidence 38999999999999999888864 89999999999887766532 1234455443 2332 5899987654
No 131
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=93.93 E-value=0.21 Score=53.66 Aligned_cols=83 Identities=10% Similarity=-0.000 Sum_probs=52.3
Q ss_pred EEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEeCCCCchhhhccCCCCCCChhhhhHHHH
Q 016377 38 VVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKI 110 (390)
Q Consensus 38 ~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~ 110 (390)
.++++|+|+.|++.-+.|... .+.++|+.++.... ....+|+|+..|| -|.+.+...+...||..+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPP------Yg~r~~~~~~l~~lY~~l 330 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPP------YGERLGEEPALIALYSQL 330 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCC------CcCccCchHHHHHHHHHH
Confidence 489999999999999999642 23577888775322 1124999999999 444433333344566666
Q ss_pred HHhcccccCCCcEEEEe
Q 016377 111 LELIPHTVKPPHMLFVE 127 (390)
Q Consensus 111 ~~~i~~~~~~P~~~~~E 127 (390)
.+.++.....++.+++=
T Consensus 331 g~~lk~~~~g~~~~llt 347 (702)
T PRK11783 331 GRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHhCCCCeEEEEe
Confidence 66665431134444443
No 132
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=93.90 E-value=0.097 Score=47.35 Aligned_cols=67 Identities=13% Similarity=0.011 Sum_probs=45.6
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-CCeecCccccch-----hhhcccCccEEEeCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTA-----AELDMYGAHAWLLSP 85 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~-----~~~~~~~~D~l~~g~ 85 (390)
-+|+||-||.|+++.-+.+..-..-.|.|+|+++- .+.++ .++++|+.+... +.+....+|+++..+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 48999999999999877664211127999999881 23344 467899988642 112233599999753
No 133
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=93.86 E-value=0.46 Score=44.49 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=67.2
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcC--------C-CCeecCccccchhhhcccCccE
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFG--------H-RPYQGNIQNLTAAELDMYGAHA 80 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~--------~-~~~~~di~~~~~~~~~~~~~D~ 80 (390)
..-+|||+.||.|.++.-+... |.+ ..|.++|+++..++..+.+.+ . ..+++|+.++. +++..+|+
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp---~~~~sfD~ 148 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP---FDDCYFDA 148 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC---CCCCCEeE
Confidence 3568999999999988877653 431 168999999999888765532 1 24678888774 34335999
Q ss_pred EEeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccc
Q 016377 81 WLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVV 130 (390)
Q Consensus 81 l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~ 130 (390)
++.+.-.. ...| ....+.++.|+++- .-.++++|-.+
T Consensus 149 V~~~~~l~---------~~~d-~~~~l~ei~rvLkp---GG~l~i~d~~~ 185 (261)
T PLN02233 149 ITMGYGLR---------NVVD-RLKAMQEMYRVLKP---GSRVSILDFNK 185 (261)
T ss_pred EEEecccc---------cCCC-HHHHHHHHHHHcCc---CcEEEEEECCC
Confidence 98653311 1222 34457777776553 34666666543
No 134
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=93.67 E-value=0.24 Score=46.02 Aligned_cols=73 Identities=11% Similarity=0.050 Sum_probs=55.5
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-CCeecCccccchhhhcccCccEEEeCCCCc
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTAAELDMYGAHAWLLSPPCQ 88 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~~~~~~~~~D~l~~g~PCq 88 (390)
..-+|+|+-||.|.++.-+....- ...|.++|+++..++..+.+++. ..+.+|+.++.+. ..+|+++.+...+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~----~~fD~v~~~~~l~ 104 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPP----QALDLIFANASLQ 104 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCC----CCccEEEEccChh
Confidence 356899999999999988876531 12699999999999998888875 4567888766432 2599999876543
No 135
>PRK06922 hypothetical protein; Provisional
Probab=93.39 E-value=0.39 Score=50.42 Aligned_cols=112 Identities=11% Similarity=0.143 Sum_probs=69.6
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-----CCeecCccccchhhhcccCccEEEeCCC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-----RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-----~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
..+|+|+.||.|.++..+....- ...+.++|+++.+++..+.+.+. .++++|+.++. ..++...+|+++.+++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp-~~fedeSFDvVVsn~v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLS-SSFEKESVDTIVYSSI 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCc-cccCCCCEEEEEEchH
Confidence 56899999999998887765321 12588999999999888877532 23567877753 1233336999998876
Q ss_pred Cchhhh----ccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEecc
Q 016377 87 CQPYTR----QGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129 (390)
Q Consensus 87 Cq~fS~----~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV 129 (390)
-..+.. .+..- ..+.....+.++.+.++. .-.+++.|.+
T Consensus 497 LH~L~syIp~~g~~f-~~edl~kiLreI~RVLKP---GGrLII~D~v 539 (677)
T PRK06922 497 LHELFSYIEYEGKKF-NHEVIKKGLQSAYEVLKP---GGRIIIRDGI 539 (677)
T ss_pred HHhhhhhcccccccc-cHHHHHHHHHHHHHHcCC---CcEEEEEeCc
Confidence 543311 11110 012233445556665543 4577777764
No 136
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=93.31 E-value=0.13 Score=49.37 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=47.1
Q ss_pred CCCCceEEeeecCchhHHHHHHhc------CCCccEEEEEcccHHHHHHHHHhcC-----CC---CeecCccccchhhhc
Q 016377 9 DGEAWRVLEFYSGIGGMRYSLMKA------DVSAQVVEAFDINDKANDVYELNFG-----HR---PYQGNIQNLTAAELD 74 (390)
Q Consensus 9 ~~~~~~~~dlF~G~Gg~~~g~~~a------G~~~~~v~a~e~~~~a~~~~~~n~~-----~~---~~~~di~~~~~~~~~ 74 (390)
....-+|+|.+||.|++-+.+.+. -..-..++++|+++.++..-+.|.- .. +..+|.-.-.... .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~-~ 122 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI-K 122 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT-S
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc-c
Confidence 344568999999999998887651 0112369999999999887666631 11 3455544332211 1
Q ss_pred ccCccEEEeCCCCchh
Q 016377 75 MYGAHAWLLSPPCQPY 90 (390)
Q Consensus 75 ~~~~D~l~~g~PCq~f 90 (390)
...+|++++.||=-..
T Consensus 123 ~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSK 138 (311)
T ss_dssp T--EEEEEEE--CTCE
T ss_pred ccccccccCCCCcccc
Confidence 1259999999995444
No 137
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=93.27 E-value=0.11 Score=51.27 Aligned_cols=45 Identities=33% Similarity=0.434 Sum_probs=37.4
Q ss_pred CCceEEeeecCch--hHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC
Q 016377 11 EAWRVLEFYSGIG--GMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (390)
Q Consensus 11 ~~~~~~dlF~G~G--g~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~ 57 (390)
.++++||.+||+| |+..+.+-+|.+ .|+++|+|+.|.+..+.|..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~--~v~~NDi~~~a~~~i~~N~~ 95 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVD--KVTANDISPEAVELIKRNLE 95 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSEC--EEEEEES-HHHHHHHHHHHH
T ss_pred CCceEEeccccccHHHHHHHHHcCCCC--EEEEecCCHHHHHHHHHhHh
Confidence 4689999999999 899999988866 99999999999999999963
No 138
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=93.24 E-value=0.16 Score=51.41 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=69.0
Q ss_pred CceEEeeecCchhHHHHHHhcCC---CccEEEEEcccHHHHHHHHHh-----cCC--CCeecCccccchhhhcccCccEE
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADV---SAQVVEAFDINDKANDVYELN-----FGH--RPYQGNIQNLTAAELDMYGAHAW 81 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~---~~~~v~a~e~~~~a~~~~~~n-----~~~--~~~~~di~~~~~~~~~~~~~D~l 81 (390)
...|+|+=||-|-++.-.-+||- ..+.|+|+|.++.|..+.+.. +.+ +++.+|++++...+ .+|||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe----kvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE----KVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-----EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC----ceeEE
Confidence 57899999999999988777761 133799999999999887432 233 46899999996533 49998
Q ss_pred EeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccc-----cccChHHHHHHHH
Q 016377 82 LLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVV-----GFETSDTHAKMIE 143 (390)
Q Consensus 82 ~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~-----~~~~~~~~~~~~~ 143 (390)
+-= .+|- +-+ +.|..+.+...+.. .+|.-+++=+-- .+.+...++.+..
T Consensus 263 VSE-------lLGs---fg~--nEl~pE~Lda~~rf-Lkp~Gi~IP~~~t~ylaPiss~~l~~~~~~ 316 (448)
T PF05185_consen 263 VSE-------LLGS---FGD--NELSPECLDAADRF-LKPDGIMIPSSYTSYLAPISSPKLYQEVRN 316 (448)
T ss_dssp EE----------BT---TBT--TTSHHHHHHHGGGG-EEEEEEEESSEEEEEEEEEE-HHHHHHHHH
T ss_pred EEe-------ccCC---ccc--cccCHHHHHHHHhh-cCCCCEEeCcchhhEEEEeeCHHHHHHHHh
Confidence 821 1232 111 23666777666654 256655554432 2223345555543
No 139
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=93.15 E-value=0.55 Score=44.00 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=66.3
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC----CCeecCccccchhhhcccCccEEEeCC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH----RPYQGNIQNLTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~----~~~~~di~~~~~~~~~~~~~D~l~~g~ 85 (390)
...+|||+-||.|+.+.-+... |. .|.++|+++..++.-+.+.+. ....+|+.+. .++...+|+++...
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~---~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~---~~~~~~FD~V~s~~ 125 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGA---HVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK---DFPENTFDMIYSRD 125 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCC---EEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC---CCCCCCeEEEEEhh
Confidence 4568999999999988877543 43 589999999998888887653 2345677654 23333599999642
Q ss_pred CCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccc
Q 016377 86 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVV 130 (390)
Q Consensus 86 PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~ 130 (390)
-+..++ .+++..++.++.++++- .-.+++.+-+.
T Consensus 126 ~l~h~~--------~~d~~~~l~~i~r~LkP---GG~lvi~d~~~ 159 (263)
T PTZ00098 126 AILHLS--------YADKKKLFEKCYKWLKP---NGILLITDYCA 159 (263)
T ss_pred hHHhCC--------HHHHHHHHHHHHHHcCC---CcEEEEEEecc
Confidence 211111 12345567777776654 34566655443
No 140
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=93.14 E-value=0.32 Score=44.83 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=64.5
Q ss_pred CCCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
....+|||+.||.|-++..+.+. |-+. .|.++|+++.=++.-+..... ..+++|.++++. ++..+|+++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~-~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~---~d~sfD~v~ 121 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNG-KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF---PDNSFDAVT 121 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S----TT-EEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCcc-EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC---CCCceeEEE
Confidence 44569999999999999888653 4322 689999999888877766542 346789888853 334599999
Q ss_pred eCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEecccc
Q 016377 83 LSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVG 131 (390)
Q Consensus 83 ~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~ 131 (390)
.++= -+ +..| +...+.++.|+++- .-.++++|-...
T Consensus 122 ~~fg--------lr-n~~d-~~~~l~E~~RVLkP---GG~l~ile~~~p 157 (233)
T PF01209_consen 122 CSFG--------LR-NFPD-RERALREMYRVLKP---GGRLVILEFSKP 157 (233)
T ss_dssp EES---------GG-G-SS-HHHHHHHHHHHEEE---EEEEEEEEEEB-
T ss_pred HHhh--------HH-hhCC-HHHHHHHHHHHcCC---CeEEEEeeccCC
Confidence 7752 11 2333 34457888887764 357888887644
No 141
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=93.10 E-value=0.41 Score=44.05 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=69.5
Q ss_pred CCceEEeeecCchhHHHHHHhcC-CCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEE
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKAD-VSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG-~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
..-++||+=||.|..+..+.+.. ..--.+.++|+++..++.-+.+... .++++|+.++. ++ +.|+++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~--~~d~v~ 127 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---IK--NASMVI 127 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CC--CCCEEe
Confidence 44589999999999988887642 1111489999999998887776432 34677887764 33 378877
Q ss_pred eCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccc
Q 016377 83 LSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVV 130 (390)
Q Consensus 83 ~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~ 130 (390)
.+...+-++ .+++..++.++.+.++- .-.+++.|.+.
T Consensus 128 ~~~~l~~~~--------~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~ 164 (239)
T TIGR00740 128 LNFTLQFLP--------PEDRIALLTKIYEGLNP---NGVLVLSEKFR 164 (239)
T ss_pred eecchhhCC--------HHHHHHHHHHHHHhcCC---CeEEEEeeccc
Confidence 665433221 12345567777776654 46788888764
No 142
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=93.08 E-value=0.23 Score=45.33 Aligned_cols=69 Identities=19% Similarity=0.075 Sum_probs=49.0
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-----CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-----RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-----~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
...++||+.||.|.++..+...|. .+.++|.++.+++.-+.+... .++..|+.++... ....+|+++.+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~Ii~~ 121 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE--HPGQFDVVTCM 121 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh--cCCCccEEEEh
Confidence 456899999999999999988875 388999999998877776542 2234444444211 12359999875
No 143
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=92.91 E-value=0.29 Score=44.45 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=49.2
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCC-------CeecCccccchhhhcccCccEEE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHR-------PYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~-------~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
....+|||+.||.|.++..+...|. .+.++|+++.+++.-+.++... ...+|+.. .. ..+|+++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----~~-~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES-----LL-GRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh-----cc-CCcCEEE
Confidence 3457999999999999999998885 3999999999988888876431 23345221 11 2489888
Q ss_pred eCCC
Q 016377 83 LSPP 86 (390)
Q Consensus 83 ~g~P 86 (390)
..-.
T Consensus 133 ~~~~ 136 (230)
T PRK07580 133 CLDV 136 (230)
T ss_pred Ecch
Confidence 6433
No 144
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.78 E-value=0.31 Score=43.85 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=49.5
Q ss_pred CceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEe
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
.-+++|+.||.|..+.-+.+. +- ...|+++|+++..++.-+.|+.. .++.+|..+..+. ...+|+++.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~---~~~fD~Ii~ 148 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIER-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK---HAPFDAIIV 148 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc---CCCccEEEE
Confidence 458999999999999777653 21 11699999999988776766532 2356777654322 124999987
Q ss_pred CCCC
Q 016377 84 SPPC 87 (390)
Q Consensus 84 g~PC 87 (390)
+..+
T Consensus 149 ~~~~ 152 (205)
T PRK13944 149 TAAA 152 (205)
T ss_pred ccCc
Confidence 7553
No 145
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=92.68 E-value=0.33 Score=43.74 Aligned_cols=73 Identities=14% Similarity=-0.042 Sum_probs=51.7
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEe
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
....+|+|+.||.|..+.-+...+ . .+.++|+++..++..+.|+.. .++.+|..+... ....+|+++.
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~-~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~I~~ 150 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV-R--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP---AYAPFDRILV 150 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh-C--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC---cCCCcCEEEE
Confidence 445799999999999998777765 2 599999999998888777642 234566543211 1125999998
Q ss_pred CCCCc
Q 016377 84 SPPCQ 88 (390)
Q Consensus 84 g~PCq 88 (390)
+.+|.
T Consensus 151 ~~~~~ 155 (212)
T PRK00312 151 TAAAP 155 (212)
T ss_pred ccCch
Confidence 76653
No 146
>PRK07402 precorrin-6B methylase; Provisional
Probab=92.66 E-value=0.23 Score=44.22 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=41.1
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccc
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQN 67 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~ 67 (390)
.-+|+|++||.|.++..+...+- ...|.++|+++.+++..+.|... .++.+|+.+
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 45899999999999988875432 12699999999999998888632 234566644
No 147
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=92.36 E-value=1.4 Score=41.88 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=71.1
Q ss_pred ccccCCCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC----C--CeecCccccchhhhcccC
Q 016377 4 DMCKNDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH----R--PYQGNIQNLTAAELDMYG 77 (390)
Q Consensus 4 ~~~~~~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~----~--~~~~di~~~~~~~~~~~~ 77 (390)
+|+..... +|+||-||.|=+++-+.+..-+ .-+.-+|+|..|++.-+.|.-. . ++..|+.+ ++.+ +
T Consensus 153 ~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~----~v~~-k 224 (300)
T COG2813 153 TLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE----PVEG-K 224 (300)
T ss_pred hCCccCCC--cEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc----cccc-c
Confidence 34444333 9999999999777777665432 2477889999999988888643 2 44555544 2333 5
Q ss_pred ccEEEeCCCCchhhhccCCCCCCC-hhhhhHHHHHHhcccccCCCcEEEEeccccccC
Q 016377 78 AHAWLLSPPCQPYTRQGLQKQSSD-ARAFSFLKILELIPHTVKPPHMLFVENVVGFET 134 (390)
Q Consensus 78 ~D~l~~g~PCq~fS~~g~~~~~~d-~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~ 134 (390)
+|.|+..||- . +|+ ...+ --..++.+..+.++. .-+.+++-| +.++
T Consensus 225 fd~IisNPPf---h-~G~--~v~~~~~~~~i~~A~~~L~~---gGeL~iVan--~~l~ 271 (300)
T COG2813 225 FDLIISNPPF---H-AGK--AVVHSLAQEIIAAAARHLKP---GGELWIVAN--RHLP 271 (300)
T ss_pred ccEEEeCCCc---c-CCc--chhHHHHHHHHHHHHHhhcc---CCEEEEEEc--CCCC
Confidence 9999999992 1 222 1111 112445555555554 578999999 6666
No 148
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=92.27 E-value=0.2 Score=44.58 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=46.9
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC--C---CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG--H---RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~--~---~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..-++|||=||-|--++=|.+.|++ |.|+|+++.|++.....-. + ...+.|+.+.. +++ +.|+|+..
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~---~~~-~yD~I~st 101 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD---FPE-EYDFIVST 101 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS----TT-TEEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc---ccC-CcCEEEEE
Confidence 4679999999999999999999986 9999999999987654321 1 23456666653 443 58888743
No 149
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=91.89 E-value=1.9 Score=38.89 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=80.2
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEeCCC
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
+|||+-||.|++..-+.+..-.. .+.++|+++..++.-+.++.. .++..|+.+.. +++ .+|+++..-
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~-~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~---~~~-~fD~I~~~~- 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL-QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP---FPD-TYDLVFGFE- 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC---CCC-CCCEeehHH-
Confidence 68999999999888877653111 588999999998888877643 33566775442 223 499998421
Q ss_pred CchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccCh----------HHHHHHHHHHHhCCceeEEEE
Q 016377 87 CQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS----------DTHAKMIEILANSDYLTQEFI 156 (390)
Q Consensus 87 Cq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~----------~~~~~~~~~l~~~GY~~~~~~ 156 (390)
.+ .. ..+ ...++..+.++++. .-.+++.+-+...... .....+.+.|++.|+.+....
T Consensus 76 --~l---~~---~~~-~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 76 --VI---HH---IKD-KMDLFSNISRHLKD---GGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred --HH---Hh---CCC-HHHHHHHHHHHcCC---CCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 11 11 112 23456666665554 4556665544322110 024567888899999886655
Q ss_pred eCCCCc
Q 016377 157 LSPLQF 162 (390)
Q Consensus 157 l~a~~~ 162 (390)
--+.+|
T Consensus 144 ~~~~~~ 149 (224)
T smart00828 144 DASLEI 149 (224)
T ss_pred ECcHhH
Confidence 445555
No 150
>PLN02366 spermidine synthase
Probab=91.84 E-value=6.9 Score=37.61 Aligned_cols=150 Identities=13% Similarity=0.067 Sum_probs=91.6
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC----------CCeecCccccchhhhcccCccEE
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH----------RPYQGNIQNLTAAELDMYGAHAW 81 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~----------~~~~~di~~~~~~~~~~~~~D~l 81 (390)
.-+||++=+|.|++...+.+.. ..+-|..+|+|+..++..+..++. .++.+|..+.-.+ .++..+|+|
T Consensus 92 pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~-~~~~~yDvI 169 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN-APEGTYDAI 169 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh-ccCCCCCEE
Confidence 5689999999999887776642 133799999999988888887753 2356776554321 222259999
Q ss_pred EeCCCCchhhhccCCCCCCChhhhh-HHHHHHhcccccCCCcEEEEecccc-ccChHHHHHHHHHHHhCC-ceeEEEEeC
Q 016377 82 LLSPPCQPYTRQGLQKQSSDARAFS-FLKILELIPHTVKPPHMLFVENVVG-FETSDTHAKMIEILANSD-YLTQEFILS 158 (390)
Q Consensus 82 ~~g~PCq~fS~~g~~~~~~d~r~~l-~~~~~~~i~~~~~~P~~~~~ENV~~-~~~~~~~~~~~~~l~~~G-Y~~~~~~l~ 158 (390)
+.-.+-. .+. ...| -.++++.+... .+|.=+++=|... +.....+..+.+.|.+.. ..+.+....
T Consensus 170 i~D~~dp----~~~-------~~~L~t~ef~~~~~~~-L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~ 237 (308)
T PLN02366 170 IVDSSDP----VGP-------AQELFEKPFFESVARA-LRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTT 237 (308)
T ss_pred EEcCCCC----CCc-------hhhhhHHHHHHHHHHh-cCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEec
Confidence 9754311 111 1122 23444444333 2788787776654 334557788888888876 344443333
Q ss_pred CCCcCCCccCcEEEEEEEeC
Q 016377 159 PLQFGVPYSRPRYFCLAKRK 178 (390)
Q Consensus 159 a~~~G~pq~R~R~~~i~~~~ 178 (390)
-.-|.. -..-|++|+++
T Consensus 238 vPsy~~---g~w~f~~as~~ 254 (308)
T PLN02366 238 VPTYPS---GVIGFVLCSKE 254 (308)
T ss_pred CCCcCC---CceEEEEEECC
Confidence 222311 44778999876
No 151
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=91.34 E-value=0.35 Score=42.73 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=44.9
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-CCeecCccccch-----hhhcccCccEEEeCC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTA-----AELDMYGAHAWLLSP 85 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~-----~~~~~~~~D~l~~g~ 85 (390)
.-+|||+-||.|+++.-+.........++++|+++.. ..++ ..++.|+.+... ..+....+|+++...
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~ 106 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDA 106 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCC
Confidence 4589999999999998887653222259999999854 2233 346678776431 112333599999754
No 152
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=91.02 E-value=0.53 Score=39.73 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=36.1
Q ss_pred CCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHH
Q 016377 9 DGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDV 51 (390)
Q Consensus 9 ~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~ 51 (390)
.....+|||+-||.|.+...+...|++ +.++|+++.+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFE---VTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSE---EEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCE---EEEEECCHHHHhh
Confidence 466779999999999999999999974 8899999999988
No 153
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.89 E-value=0.81 Score=44.91 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=52.5
Q ss_pred EEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEeCCCCchhhhccCCCCCCChhhhhHHHH
Q 016377 38 VVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKI 110 (390)
Q Consensus 38 ~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~ 110 (390)
.++++|+|+..++.-+.|--. ...+.|++.+.... . ..|+++..|| -|-+-+.+..-..|+.++
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-~--~~gvvI~NPP------YGeRlg~~~~v~~LY~~f 326 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-E--EYGVVISNPP------YGERLGSEALVAKLYREF 326 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-C--cCCEEEeCCC------cchhcCChhhHHHHHHHH
Confidence 578999999999999999753 23578888886543 2 4899999999 555544443345689999
Q ss_pred HHhcccc
Q 016377 111 LELIPHT 117 (390)
Q Consensus 111 ~~~i~~~ 117 (390)
.+.++..
T Consensus 327 g~~lk~~ 333 (381)
T COG0116 327 GRTLKRL 333 (381)
T ss_pred HHHHHHH
Confidence 9888654
No 154
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=90.86 E-value=0.62 Score=42.16 Aligned_cols=70 Identities=11% Similarity=0.002 Sum_probs=49.4
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEe
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
..-+|+|+.||.|.++.-+.+. |- ...|+++|+++...+.-+.|... .++.+|..+.... ...+|+++.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~---~~~fD~I~~ 151 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE---NAPYDRIYV 151 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc---CCCcCEEEE
Confidence 4468999999999999877764 32 12699999999999888887632 2456776554221 124899886
Q ss_pred C
Q 016377 84 S 84 (390)
Q Consensus 84 g 84 (390)
+
T Consensus 152 ~ 152 (212)
T PRK13942 152 T 152 (212)
T ss_pred C
Confidence 4
No 155
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=90.85 E-value=2.3 Score=38.74 Aligned_cols=148 Identities=16% Similarity=0.118 Sum_probs=86.9
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHH-hcC--C---------------CCeecCccccchh
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYEL-NFG--H---------------RPYQGNIQNLTAA 71 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~-n~~--~---------------~~~~~di~~~~~~ 71 (390)
...-+|+.--||-|=--.-|.+.|++ |.++|+.+.|++.+.. |.. . .++++|+-+++++
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~---VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHD---VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEE---EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCe---EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 34568999999998888888889975 8999999999999733 321 0 2357899888876
Q ss_pred hhcccCccEEEeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCc--EEEEeccccccChH----HHHHHHHHH
Q 016377 72 ELDMYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPH--MLFVENVVGFETSD----THAKMIEIL 145 (390)
Q Consensus 72 ~~~~~~~D~l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~~~~~~----~~~~~~~~l 145 (390)
.+- .+|+|. =|..|-... .+.|..-..++.++++- ... .+.++--.+-..+. .-+++.+.|
T Consensus 113 ~~g--~fD~iy---Dr~~l~Alp-----p~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~ 179 (218)
T PF05724_consen 113 DVG--KFDLIY---DRTFLCALP-----PEMRERYAQQLASLLKP---GGRGLLITLEYPQGEMEGPPFSVTEEEVRELF 179 (218)
T ss_dssp CHH--SEEEEE---ECSSTTTS------GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSSSSS----HHHHHHHH
T ss_pred hcC--CceEEE---EecccccCC-----HHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHh
Confidence 553 388888 333332221 13455555555665554 245 44454333333332 234444444
Q ss_pred HhCCceeEEE----EeCC----CCcCCCccCcEEEEE
Q 016377 146 ANSDYLTQEF----ILSP----LQFGVPYSRPRYFCL 174 (390)
Q Consensus 146 ~~~GY~~~~~----~l~a----~~~G~pq~R~R~~~i 174 (390)
. -++.+... .++. ...|+..-++++|++
T Consensus 180 ~-~~f~i~~l~~~~~~~~~~~~~~~~~~~~~e~~~~l 215 (218)
T PF05724_consen 180 G-PGFEIEELEEEDSIEEEPRFKSWGLSRFREKVYVL 215 (218)
T ss_dssp T-TTEEEEEEEEEE-TTT-HHHHCCT-SS-EEEEEEE
T ss_pred c-CCcEEEEEecccccccccchhhcCcCceeEEEEEE
Confidence 4 77876543 2332 236888888888876
No 156
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=90.66 E-value=1.5 Score=38.62 Aligned_cols=126 Identities=19% Similarity=0.222 Sum_probs=78.4
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------C--CeecCccccchhhhcccCccEEEeCC
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------R--PYQGNIQNLTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~--~~~~di~~~~~~~~~~~~~D~l~~g~ 85 (390)
+||||=||-|-+-.+|.+.||..+ +.++|.++.|.+. ..|..+ . ..+.||.+- ++...++|++.---
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~L-A~niAe~~~~~n~I~f~q~DI~~~---~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVEL-AQNIAERDGFSNEIRFQQLDITDP---DFLSGQFDLVLDKG 144 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHH-HHHHHHhcCCCcceeEEEeeccCC---cccccceeEEeecC
Confidence 999999999999999999999743 8999999999987 555432 1 245677654 22222567666333
Q ss_pred CCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeEEE
Q 016377 86 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEF 155 (390)
Q Consensus 86 PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~ 155 (390)
---..|..+-. .+.|-.+|+..++ .+ .+|-=+++=--.++ +.+++++.++.-|+.+...
T Consensus 145 T~DAisLs~d~---~~~r~~~Y~d~v~---~l-l~~~gifvItSCN~----T~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 145 TLDAISLSPDG---PVGRLVVYLDSVE---KL-LSPGGIFVITSCNF----TKDELVEEFENFNFEYLST 203 (227)
T ss_pred ceeeeecCCCC---cccceeeehhhHh---hc-cCCCcEEEEEecCc----cHHHHHHHHhcCCeEEEEe
Confidence 33333333221 1233345555554 33 14544443333444 6899999999988655443
No 157
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=90.57 E-value=4.3 Score=37.93 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=63.2
Q ss_pred CCceEEeeecCchhHHHHHHh-cCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEe
Q 016377 11 EAWRVLEFYSGIGGMRYSLMK-ADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~-aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
..-+|||+-||.|....-+.. .|.. ..|.++|+++..++.-+.|... ..+.+|+.++. +.+..+|+++.
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~---~~~~~fD~Vi~ 152 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP---VADNSVDVIIS 152 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC---CCCCceeEEEE
Confidence 456999999999876654433 3542 2589999999998888877422 23457777654 23335899985
Q ss_pred CCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEecc
Q 016377 84 SPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129 (390)
Q Consensus 84 g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV 129 (390)
..-. +. ..| ...++.++.++++. .-.+++.+-+
T Consensus 153 ~~v~------~~---~~d-~~~~l~~~~r~Lkp---GG~l~i~~~~ 185 (272)
T PRK11873 153 NCVI------NL---SPD-KERVFKEAFRVLKP---GGRFAISDVV 185 (272)
T ss_pred cCcc------cC---CCC-HHHHHHHHHHHcCC---CcEEEEEEee
Confidence 5321 11 112 23467777777665 4566665543
No 158
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=90.47 E-value=0.68 Score=43.19 Aligned_cols=71 Identities=21% Similarity=0.222 Sum_probs=58.8
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCC-------CeecCccccchhhhcccCccEEEeCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHR-------PYQGNIQNLTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~-------~~~~di~~~~~~~~~~~~~D~l~~g~ 85 (390)
=.||+.--|.|.++..+-++|-+ |.|+|+|+.-+.-....+.+. ++.+|+-+. +++. +|+.+...
T Consensus 60 D~VLEvGPGTGnLT~~lLe~~kk---VvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~---d~P~--fd~cVsNl 131 (315)
T KOG0820|consen 60 DVVLEVGPGTGNLTVKLLEAGKK---VVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT---DLPR--FDGCVSNL 131 (315)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCe---EEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC---CCcc--cceeeccC
Confidence 46899999999999999999975 899999999999999998764 467788776 4564 99999888
Q ss_pred CCchhh
Q 016377 86 PCQPYT 91 (390)
Q Consensus 86 PCq~fS 91 (390)
|-|=-|
T Consensus 132 PyqISS 137 (315)
T KOG0820|consen 132 PYQISS 137 (315)
T ss_pred CccccC
Confidence 866544
No 159
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=90.14 E-value=0.37 Score=42.44 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=48.4
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhc--CC----CCeecCccccchhhhcccCccEEE
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF--GH----RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~--~~----~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
.+.||=+|.|-+|+-...+ .+ -|+|+|.|++-+.....|. ++ .++.+|..+.+ +.+ .|+++
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~-A~--rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~---fe~--ADvvi 101 (252)
T COG4076 35 TFADLGAGSGILSVVAAHA-AE--RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD---FEN--ADVVI 101 (252)
T ss_pred ceeeccCCcchHHHHHHhh-hc--eEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc---ccc--cceeH
Confidence 5789999999999877776 33 7999999999999999994 43 45788888874 443 77776
No 160
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=90.08 E-value=0.74 Score=43.31 Aligned_cols=69 Identities=16% Similarity=0.066 Sum_probs=51.8
Q ss_pred CceEEeeecCchhHHHHHHhcCCC--ccEEEEEcccHHHHHHHHHhcCC-CCeecCccccchhhhcccCccEEEe
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVS--AQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~--~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
.-++||+-||.|..+..+....-. ...+.++|+++.+++.-+.+++. ....+|+.++. +....+|+++.
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp---~~~~sfD~I~~ 157 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP---FADQSLDAIIR 157 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCC---CcCCceeEEEE
Confidence 457999999999999888764211 12589999999999998888876 34678888764 33335999984
No 161
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=89.91 E-value=0.83 Score=41.27 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=49.3
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
...+++|+.||.|.++.-+.+.|.+ +.++|.++..++..+.+... .....|+.++.... + ..+|+++..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-~-~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG-A-KSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-C-CCccEEEeh
Confidence 4679999999999999988887754 88999999988877776542 12345555543221 1 258998864
No 162
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=89.67 E-value=2.5 Score=41.91 Aligned_cols=124 Identities=8% Similarity=-0.018 Sum_probs=76.3
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC-----C-CCeecCccccchhhhcccCccEEEeCC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG-----H-RPYQGNIQNLTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~-----~-~~~~~di~~~~~~~~~~~~~D~l~~g~ 85 (390)
...+||+-||.|.+.+.+....-+ ..+.|+|+++.+++.-..+.. + .++++|+..+.. .++...+|.++..+
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~-~~~~~s~D~I~lnF 200 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE-LLPSNSVEKIFVHF 200 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh-hCCCCceeEEEEeC
Confidence 458999999999999998876421 269999999888766655542 2 346788876542 35555699999999
Q ss_pred CCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCC
Q 016377 86 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSD 149 (390)
Q Consensus 86 PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~G 149 (390)
|+....... + .. ....++.++.|+++. .-.+.+---+.. .+...++.+.+.+
T Consensus 201 PdPW~KkrH-R-Rl--v~~~fL~e~~RvLkp---GG~l~l~TD~~~-----y~~~~~e~~~~~~ 252 (390)
T PRK14121 201 PVPWDKKPH-R-RV--ISEDFLNEALRVLKP---GGTLELRTDSEL-----YFEFSLELFLKLP 252 (390)
T ss_pred CCCccccch-h-hc--cHHHHHHHHHHHcCC---CcEEEEEEECHH-----HHHHHHHHHHhCC
Confidence 876422111 0 01 012344445555543 344555444433 3666666666653
No 163
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=89.36 E-value=0.79 Score=42.60 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=52.7
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCc
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQ 88 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq 88 (390)
..-+|||+-||.|.++.-+....-.. .|.++|+++..++.-+.+ .-..+++|+.++.+ ...+|+++.....+
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~----~~~fD~v~~~~~l~ 100 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGA-VIEALDSSPEMVAAARER-GVDARTGDVRDWKP----KPDTDVVVSNAALQ 100 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhc-CCcEEEcChhhCCC----CCCceEEEEehhhh
Confidence 34689999999999999888762111 589999999998876654 23456788877632 12599999877654
No 164
>PLN02823 spermine synthase
Probab=89.18 E-value=13 Score=36.20 Aligned_cols=148 Identities=13% Similarity=0.132 Sum_probs=91.7
Q ss_pred CceEEeeecCchhHHHHHHh-cCCCccEEEEEcccHHHHHHHHHhcCC----------CCeecCccccchhhhcccCccE
Q 016377 12 AWRVLEFYSGIGGMRYSLMK-ADVSAQVVEAFDINDKANDVYELNFGH----------RPYQGNIQNLTAAELDMYGAHA 80 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~-aG~~~~~v~a~e~~~~a~~~~~~n~~~----------~~~~~di~~~~~~~~~~~~~D~ 80 (390)
.-+||.+=+|.|++..-+.+ .+.+ .+.++|+|+..++..+..++. .++.+|..+.-... . ..+|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~--~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~-~~yDv 179 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVE--KVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-D-EKFDV 179 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCC--eEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-C-CCccE
Confidence 44787777777666554433 4544 899999999999999988862 24667777654321 2 25999
Q ss_pred EEeCCCCchhhhccCCCCCCChhhhhH-HHHHH-hc-ccccCCCcEEEEecccc--c-cChHHHHHHHHHHHhCCceeEE
Q 016377 81 WLLSPPCQPYTRQGLQKQSSDARAFSF-LKILE-LI-PHTVKPPHMLFVENVVG--F-ETSDTHAKMIEILANSDYLTQE 154 (390)
Q Consensus 81 l~~g~PCq~fS~~g~~~~~~d~r~~l~-~~~~~-~i-~~~~~~P~~~~~ENV~~--~-~~~~~~~~~~~~l~~~GY~~~~ 154 (390)
|+.-.+ .+.+ .|. -..|+ .++++ .+ +.+ +|.=+++=|+.. . .....+..+.+.|.+..-.+..
T Consensus 180 Ii~D~~-dp~~-~~~-------~~~Lyt~eF~~~~~~~~L--~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~ 248 (336)
T PLN02823 180 IIGDLA-DPVE-GGP-------CYQLYTKSFYERIVKPKL--NPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVP 248 (336)
T ss_pred EEecCC-Cccc-cCc-------chhhccHHHHHHHHHHhc--CCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEE
Confidence 998753 1111 111 01122 24444 33 345 787777666643 2 2345678888888887766666
Q ss_pred EEeCCCCcCCCccCcEEEEEEEeC
Q 016377 155 FILSPLQFGVPYSRPRYFCLAKRK 178 (390)
Q Consensus 155 ~~l~a~~~G~pq~R~R~~~i~~~~ 178 (390)
....-..||. ..-|++|++.
T Consensus 249 y~~~vPsf~~----~w~f~~aS~~ 268 (336)
T PLN02823 249 YTAHVPSFAD----TWGWVMASDH 268 (336)
T ss_pred EEeecCCCCC----ceEEEEEeCC
Confidence 6555556654 2788888865
No 165
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=88.99 E-value=1.3 Score=42.57 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=51.7
Q ss_pred CCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccH---HHHHHHHHhc-CC--CCeecCccccchhhhcccCccEEE
Q 016377 9 DGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDIND---KANDVYELNF-GH--RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 9 ~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~---~a~~~~~~n~-~~--~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
+-..--|+|.=||.|-+|.=..+||.+ .|+|+|-++ .|.+..+.|. .+ .+|.+-|+++ ++++ ++|+|+
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdi---eLPE-k~DviI 248 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDI---ELPE-KVDVII 248 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcc--eEEEEehhHHHHHHHHHHhcCCccceEEEccCccccc---cCch-hccEEE
Confidence 334456999999999999999999966 999998765 4444444442 33 3577888888 5666 599998
Q ss_pred eC
Q 016377 83 LS 84 (390)
Q Consensus 83 ~g 84 (390)
--
T Consensus 249 SE 250 (517)
T KOG1500|consen 249 SE 250 (517)
T ss_pred ec
Confidence 54
No 166
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=88.82 E-value=1.1 Score=39.81 Aligned_cols=91 Identities=16% Similarity=0.082 Sum_probs=61.4
Q ss_pred CceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCchh
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQPY 90 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~f 90 (390)
.-+||||=||-|-+=.-|+.. +. ..+++|+|++.+..-.++. -.++++|+.+- -..+++..+|.++.+--=|..
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv~rG-v~Viq~Dld~g-L~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACVARG-VSVIQGDLDEG-LADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHHHcC-CCEEECCHHHh-HhhCCCCCccEEehHhHHHhH
Confidence 468999999999888777763 43 4899999999876654443 35889999873 234666679999966332222
Q ss_pred hhccCCCCCCChhhhhHHHHHHhcccc
Q 016377 91 TRQGLQKQSSDARAFSFLKILELIPHT 117 (390)
Q Consensus 91 S~~g~~~~~~d~r~~l~~~~~~~i~~~ 117 (390)
..+ ..++.+++|+-++.
T Consensus 89 ---------~~P-~~vL~EmlRVgr~~ 105 (193)
T PF07021_consen 89 ---------RRP-DEVLEEMLRVGRRA 105 (193)
T ss_pred ---------hHH-HHHHHHHHHhcCeE
Confidence 112 23566777765543
No 167
>PLN02476 O-methyltransferase
Probab=88.63 E-value=2.2 Score=40.33 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=65.2
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhc---ccCcc
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELD---MYGAH 79 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~---~~~~D 79 (390)
..-++||+.+|+|..++-+..+ +-+. .+.++|.++.+.+.-+.|+.. .++.+|..++-+.... ...+|
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G-~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESG-CLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3458999999999999988764 2112 589999999999999999843 2356777665433111 12589
Q ss_pred EEEeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEecc
Q 016377 80 AWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129 (390)
Q Consensus 80 ~l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV 129 (390)
+++...+ + ..+.++++.+..+.+.=-++++.||
T Consensus 197 ~VFIDa~----------------K-~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 197 FAFVDAD----------------K-RMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEEECCC----------------H-HHHHHHHHHHHHhcCCCcEEEEecC
Confidence 9886543 1 1244544443332123467788999
No 168
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=88.03 E-value=1.3 Score=42.75 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=47.8
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHH---hcC---C-CCeecCccccchhhhcccCccEEEe
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYEL---NFG---H-RPYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~---n~~---~-~~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
..-+|+|+-||.|..+..+...|.+ .|.++|.++......+. ... . .++.+|+.++.. .+ .+|+++.
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~---~~-~FD~V~s 195 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA---LK-AFDTVFS 195 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC---cC-CcCEEEE
Confidence 3458999999999999999999976 79999999876543322 111 1 245678877743 22 4899984
No 169
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=87.95 E-value=0.34 Score=44.94 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=30.6
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHh
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELN 55 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n 55 (390)
..-+++|+|||+|+.++.+...+. .++++|+++.....+++-
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~~---~vi~ND~~~~l~~~~~~~ 61 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPGK---RVIINDINPDLINFWKAV 61 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---SS---EEEEEES-HHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccccc---ceeeeechHHHHHHHHHH
Confidence 567899999999999998876343 689999999998888743
No 170
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=87.84 E-value=1.4 Score=38.53 Aligned_cols=76 Identities=21% Similarity=0.092 Sum_probs=46.1
Q ss_pred CCCCCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-------CC--eecCccc-cchhhhccc
Q 016377 8 NDGEAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-------RP--YQGNIQN-LTAAELDMY 76 (390)
Q Consensus 8 ~~~~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-------~~--~~~di~~-~~~~~~~~~ 76 (390)
......+|+||=||+|-.++.+... |.. .|.+.|.++ +.+..+.|... .+ ..-|-.+ +..+.+...
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~--~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAA--RVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-S--EEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-S
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCc--eEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccc
Confidence 3455679999999999888888888 544 788899999 99988888532 11 1112222 111222323
Q ss_pred CccEEEeCCC
Q 016377 77 GAHAWLLSPP 86 (390)
Q Consensus 77 ~~D~l~~g~P 86 (390)
.+|+|+|+=-
T Consensus 119 ~~D~IlasDv 128 (173)
T PF10294_consen 119 SFDVILASDV 128 (173)
T ss_dssp SBSEEEEES-
T ss_pred cCCEEEEecc
Confidence 6999998743
No 171
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=87.81 E-value=1.5 Score=42.43 Aligned_cols=71 Identities=14% Similarity=0.079 Sum_probs=47.5
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..-+|+|+.||.|.++.-+.+..-.--.|.++|+++..++.-+.|... .++.+|..+.... .. .+|+++.+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~-~~--~fD~Ii~~ 156 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE-FA--PYDVIFVT 156 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-cC--CccEEEEC
Confidence 346899999999999988876431111588999999887766665431 2356776554322 12 48999865
No 172
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=87.70 E-value=1.5 Score=43.45 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=67.1
Q ss_pred cccCCCCCceEEeeecCchhHHHHHHh----cCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhc
Q 016377 5 MCKNDGEAWRVLEFYSGIGGMRYSLMK----ADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELD 74 (390)
Q Consensus 5 ~~~~~~~~~~~~dlF~G~Gg~~~g~~~----aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~ 74 (390)
|.-..+..-+++|+||-.||=+.-... .| +|+|+|.+...++....|... .+++.|..++....+.
T Consensus 235 ~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G----~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~ 310 (460)
T KOG1122|consen 235 MALDPQPGERILDMCAAPGGKTTHIAALMKNTG----VIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFP 310 (460)
T ss_pred eecCCCCCCeecchhcCCCchHHHHHHHHcCCc----eEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccC
Confidence 445677889999999999987654433 45 899999999999999999753 2456788877666666
Q ss_pred ccCccEEEeCCCCchhhhccC
Q 016377 75 MYGAHAWLLSPPCQPYTRQGL 95 (390)
Q Consensus 75 ~~~~D~l~~g~PCq~fS~~g~ 95 (390)
. .+|=+..-.||.+--...+
T Consensus 311 ~-~fDRVLLDAPCSGtgvi~K 330 (460)
T KOG1122|consen 311 G-SFDRVLLDAPCSGTGVISK 330 (460)
T ss_pred c-ccceeeecCCCCCCccccc
Confidence 5 6999999999988655544
No 173
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=87.64 E-value=0.34 Score=47.82 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=37.8
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH 58 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~ 58 (390)
=.+.|+|||+|-+++-+..-|. .|+|+|.++.+++.++.|.+-
T Consensus 251 evv~D~FaGvGPfa~Pa~kK~c---rV~aNDLNpesik~Lk~ni~l 293 (495)
T KOG2078|consen 251 EVVCDVFAGVGPFALPAAKKGC---RVYANDLNPESIKWLKANIKL 293 (495)
T ss_pred chhhhhhcCcCccccchhhcCc---EEEecCCCHHHHHHHHHhccc
Confidence 3588999999999888776673 799999999999999999985
No 174
>PRK11524 putative methyltransferase; Provisional
Probab=87.61 E-value=0.93 Score=43.00 Aligned_cols=46 Identities=11% Similarity=-0.016 Sum_probs=40.3
Q ss_pred CCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC
Q 016377 9 DGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (390)
Q Consensus 9 ~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~ 57 (390)
..+.=.|||-|+|.|...++.++.|-+ ..++|++++.++.-..++.
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR~---~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGRK---FIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCCC---EEEEeCCHHHHHHHHHHHH
Confidence 345556999999999999999999986 7899999999999888874
No 175
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=87.49 E-value=0.62 Score=47.11 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=35.8
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~ 57 (390)
=.++|+|||.|-+++++.. |++ .|.++|++++|++--+.|-.
T Consensus 385 k~llDv~CGTG~iglala~-~~~--~ViGvEi~~~aV~dA~~nA~ 426 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALAR-GVK--RVIGVEISPDAVEDAEKNAQ 426 (534)
T ss_pred cEEEEEeecCCceehhhhc-ccc--ceeeeecChhhcchhhhcch
Confidence 4689999999999998875 655 89999999999887777754
No 176
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=87.29 E-value=1.7 Score=44.30 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=62.4
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-----CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-----RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-----~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
..-+|||+-||.|+....+... |. .+.++|+++.+.+.-+.|... ..+++|+.+.. ++...+|+++..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~I~s~ 339 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT---YPDNSFDVIYSR 339 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC---CCCCCEEEEEEC
Confidence 3468999999999988877764 43 599999999999887777543 23567776653 333359999853
Q ss_pred CCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEe
Q 016377 85 PPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVE 127 (390)
Q Consensus 85 ~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~E 127 (390)
.- -....| ...++.++.++++. .-.+++.+
T Consensus 340 ~~---------l~h~~d-~~~~l~~~~r~Lkp---gG~l~i~~ 369 (475)
T PLN02336 340 DT---------ILHIQD-KPALFRSFFKWLKP---GGKVLISD 369 (475)
T ss_pred Cc---------ccccCC-HHHHHHHHHHHcCC---CeEEEEEE
Confidence 11 111223 23456666665554 33444444
No 177
>PRK08317 hypothetical protein; Provisional
Probab=86.93 E-value=2.7 Score=37.93 Aligned_cols=71 Identities=15% Similarity=0.037 Sum_probs=48.9
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC---C--CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG---H--RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~---~--~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
...+|+|+.||.|.++..+.........+.++|+++..++.-+.+.. . ..+..|+.++. +....+|+++..
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~ 94 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP---FPDGSFDAVRSD 94 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC---CCCCCceEEEEe
Confidence 35689999999999999887753111269999999998877776621 1 23456776553 233358998854
No 178
>PRK13699 putative methylase; Provisional
Probab=86.71 E-value=1.2 Score=40.88 Aligned_cols=46 Identities=9% Similarity=0.129 Sum_probs=38.8
Q ss_pred CCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC
Q 016377 9 DGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (390)
Q Consensus 9 ~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~ 57 (390)
....=.|+|-|||.|..-++..+.|.+ .+++|+++..++.-..++.
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r~---~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGRR---YIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCCC---EEEEecCHHHHHHHHHHHH
Confidence 334557999999999999999999987 6699999999888777763
No 179
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=86.70 E-value=1.4 Score=42.72 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=35.5
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhc
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF 56 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~ 56 (390)
...+||||+||=||--.=+..+++. .++++|++..+++--+.++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~--~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK--HYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S--EEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC--EEEEEeCCHHHHHHHHHHH
Confidence 7899999999999998999999977 9999999988877766666
No 180
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=86.34 E-value=9.8 Score=34.36 Aligned_cols=122 Identities=13% Similarity=0.100 Sum_probs=73.3
Q ss_pred CCCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCC
Q 016377 8 NDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPC 87 (390)
Q Consensus 8 ~~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PC 87 (390)
+......|.||=||=+-++..+. .++ .|...|+-.. ...++.+||..+.. ++..+|+.+.+
T Consensus 69 ~~~~~~viaD~GCGdA~la~~~~-~~~---~V~SfDLva~---------n~~Vtacdia~vPL---~~~svDv~Vfc--- 129 (219)
T PF05148_consen 69 KRPKSLVIADFGCGDAKLAKAVP-NKH---KVHSFDLVAP---------NPRVTACDIANVPL---EDESVDVAVFC--- 129 (219)
T ss_dssp TS-TTS-EEEES-TT-HHHHH---S------EEEEESS-S---------STTEEES-TTS-S-----TT-EEEEEEE---
T ss_pred hcCCCEEEEECCCchHHHHHhcc-cCc---eEEEeeccCC---------CCCEEEecCccCcC---CCCceeEEEEE---
Confidence 34456899999888777775543 243 4888898743 23678899998864 43459999977
Q ss_pred chhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeEEEEeCCCCc
Q 016377 88 QPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQF 162 (390)
Q Consensus 88 q~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~a~~~ 162 (390)
.|.+|. +. ...+.|..|+++. .-..++.|=...+.+ .+.+++.++++|+.+...-..-..|
T Consensus 130 --LSLMGT--n~----~~fi~EA~RvLK~---~G~L~IAEV~SRf~~---~~~F~~~~~~~GF~~~~~d~~n~~F 190 (219)
T PF05148_consen 130 --LSLMGT--NW----PDFIREANRVLKP---GGILKIAEVKSRFEN---VKQFIKALKKLGFKLKSKDESNKHF 190 (219)
T ss_dssp --S---SS---H----HHHHHHHHHHEEE---EEEEEEEEEGGG-S----HHHHHHHHHCTTEEEEEEE--STTE
T ss_pred --hhhhCC--Cc----HHHHHHHHheecc---CcEEEEEEecccCcC---HHHHHHHHHHCCCeEEecccCCCeE
Confidence 356665 12 3467788898886 578888887777754 5778888999999998875443343
No 181
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=86.29 E-value=2 Score=41.35 Aligned_cols=69 Identities=10% Similarity=-0.041 Sum_probs=47.9
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHH---h---cCC-CCeecCccccchhhhcccCccEEE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYEL---N---FGH-RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~---n---~~~-~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
...-+|+|+-||.|.....+...|.+ .|.++|.++..+..++. . .+. .....|+.++... . .+|+++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~--~--~FD~V~ 193 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL--Y--AFDTVF 193 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC--C--CcCEEE
Confidence 33468999999999999999988876 89999999876544322 1 111 2345677766532 2 489988
Q ss_pred eC
Q 016377 83 LS 84 (390)
Q Consensus 83 ~g 84 (390)
..
T Consensus 194 s~ 195 (314)
T TIGR00452 194 SM 195 (314)
T ss_pred Ec
Confidence 53
No 182
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=86.07 E-value=2.9 Score=39.88 Aligned_cols=76 Identities=17% Similarity=0.068 Sum_probs=53.9
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC----CCeecCccccchhhhccc--CccEEEeCC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH----RPYQGNIQNLTAAELDMY--GAHAWLLSP 85 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~----~~~~~di~~~~~~~~~~~--~~D~l~~g~ 85 (390)
.-.++|.-||.||-|..+.+..-.--.|+|+|.|+.|++.-+.+... .++.+|..++... +... .+|.+++-+
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~-l~~~~~~vDgIl~DL 98 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEV-LAEGLGKVDGILLDL 98 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHH-HHcCCCccCEEEECC
Confidence 45899999999999999998742111699999999999998877632 3467777776432 2111 388887765
Q ss_pred CCc
Q 016377 86 PCQ 88 (390)
Q Consensus 86 PCq 88 (390)
=|-
T Consensus 99 GvS 101 (296)
T PRK00050 99 GVS 101 (296)
T ss_pred Ccc
Confidence 443
No 183
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=85.41 E-value=1.7 Score=38.74 Aligned_cols=66 Identities=20% Similarity=0.098 Sum_probs=47.1
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC----CCeecCccccchhhhcccCccEEEeCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH----RPYQGNIQNLTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~----~~~~~di~~~~~~~~~~~~~D~l~~g~ 85 (390)
-+++|+=||+|-++..|.... + -+.++|+.+.|++.-+.+..+ ..++.|+.+. .+...+|+|+.|-
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC-d--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~----~P~~~FDLIV~SE 114 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC-D--RLLAVDISPRALARARERLAGLPHVEWIQADVPEF----WPEGRFDLIVLSE 114 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE-E--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT-------SS-EEEEEEES
T ss_pred ceeEecCCCccHHHHHHHHhh-C--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC----CCCCCeeEEEEeh
Confidence 468999999999999997765 3 699999999999999988876 2356777664 3444699999763
No 184
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=84.61 E-value=6.1 Score=36.64 Aligned_cols=142 Identities=14% Similarity=0.146 Sum_probs=90.4
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC----------CCeecCccccchhhhcccCccE
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH----------RPYQGNIQNLTAAELDMYGAHA 80 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~----------~~~~~di~~~~~~~~~~~~~D~ 80 (390)
..-+||-+=.|.||....+.... ..+.+.++|+|+..++..+.-++. .++.+|...+-.+...+ .+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~-~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEE-KYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST--EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCC-cccE
Confidence 45678877777777766665433 134899999999999998887653 34677877765443331 4999
Q ss_pred EEeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccc-cChHHHHHHHHHHHhCCceeEEEEeCC
Q 016377 81 WLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGF-ETSDTHAKMIEILANSDYLTQEFILSP 159 (390)
Q Consensus 81 l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~-~~~~~~~~~~~~l~~~GY~~~~~~l~a 159 (390)
|+.-.+= +. +. ..+-.-.++++.++.. .+|.=+++=|.... .....++.+.+.|.+..-++......-
T Consensus 154 Ii~D~~d-p~---~~------~~~l~t~ef~~~~~~~-L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~v 222 (246)
T PF01564_consen 154 IIVDLTD-PD---GP------APNLFTREFYQLCKRR-LKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYV 222 (246)
T ss_dssp EEEESSS-TT---SC------GGGGSSHHHHHHHHHH-EEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEEC
T ss_pred EEEeCCC-CC---CC------cccccCHHHHHHHHhh-cCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEc
Confidence 9876541 11 11 1112224555555553 26877777777443 344578899999999998888888877
Q ss_pred CCcCCC
Q 016377 160 LQFGVP 165 (390)
Q Consensus 160 ~~~G~p 165 (390)
..||..
T Consensus 223 P~~~~~ 228 (246)
T PF01564_consen 223 PSYGSG 228 (246)
T ss_dssp TTSCSS
T ss_pred Ceeccc
Confidence 777643
No 185
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=84.26 E-value=2 Score=41.58 Aligned_cols=65 Identities=22% Similarity=0.192 Sum_probs=49.9
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEccc---HHHHHHHHHhcCCC---CeecCccccchhhhcccCccEEE
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDIN---DKANDVYELNFGHR---PYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~---~~a~~~~~~n~~~~---~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
-+|+|.=||.|-+|+=...||.. -|+|+|.. ..|.+..+.|.-+. ++.+.|+++ +|+...+|+|+
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~--~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi---~LP~eKVDiIv 132 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGAR--KVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI---ELPVEKVDIIV 132 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcc--eEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE---ecCccceeEEe
Confidence 46999999999999999999965 89998866 45566666776553 467888888 44433599987
No 186
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=84.04 E-value=1.3 Score=41.09 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=37.6
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHh
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELN 55 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n 55 (390)
..+++|.=||.|-+|.-|.+.|.+ |.|+|..++++++++.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~---V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQ---VTGIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhhHhhCCe---eEeecccHHHHHHHHHh
Confidence 367999999999999999999974 99999999999998876
No 187
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=83.63 E-value=9.3 Score=34.70 Aligned_cols=115 Identities=11% Similarity=0.070 Sum_probs=81.7
Q ss_pred CceEEeeecCchhHHHHHHh-cCCCccEEEEEcccHHHHHHHHHhcCC-CCeecCccccchhhhcccCccEEEeCCCCch
Q 016377 12 AWRVLEFYSGIGGMRYSLMK-ADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTAAELDMYGAHAWLLSPPCQP 89 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~-aG~~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~ 89 (390)
.-+|+||=||.|-.+.=+.+ -.-. ++.++|.+++-++.-+...|+ ....+|+++..++. +.|+|.+.---
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A--~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~----~~dllfaNAvl-- 102 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDA--VITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQ----PTDLLFANAVL-- 102 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCC--eEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCC----ccchhhhhhhh--
Confidence 45799999999987776665 3333 899999999999998999998 56689999997642 37888743221
Q ss_pred hhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHh
Q 016377 90 YTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILAN 147 (390)
Q Consensus 90 fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~ 147 (390)
..-.+...|| -|++..+ .|--++.-.+|+-+....+..+.+..++
T Consensus 103 --------qWlpdH~~ll---~rL~~~L--~Pgg~LAVQmPdN~depsH~~mr~~A~~ 147 (257)
T COG4106 103 --------QWLPDHPELL---PRLVSQL--APGGVLAVQMPDNLDEPSHRLMRETADE 147 (257)
T ss_pred --------hhccccHHHH---HHHHHhh--CCCceEEEECCCccCchhHHHHHHHHhc
Confidence 1223334444 4666688 8999999999988776656555554443
No 188
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=83.40 E-value=3.4 Score=37.80 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=35.7
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHh
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELN 55 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n 55 (390)
.-+|++.-||-|--..-|.+.|++ |.|+|+++.|++.+.+.
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~e 84 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFSQ 84 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHHH
Confidence 358999999998888888899986 99999999999998663
No 189
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=82.88 E-value=4.1 Score=38.95 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=42.4
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHh----cCCC---CeecCcccc
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELN----FGHR---PYQGNIQNL 68 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n----~~~~---~~~~di~~~ 68 (390)
..-++|||=||.|-.+..+.+++.+...+.++|+++...+....+ +|.. .+++|..+.
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 346899999999999999988742112589999999886665554 4542 357888763
No 190
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=82.31 E-value=2.7 Score=34.87 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=37.7
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~ 57 (390)
+++|+-||.|-.++.+...+.+. .++++|.++.+.+.++.|+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~-~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEG-RVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCC-EEEEEecCHHHHHHHHHHHH
Confidence 48999999999999999887532 69999999999999999874
No 191
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=81.84 E-value=3.9 Score=40.57 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=45.8
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCCC---CeecCccccchhhhcccCccEEEe
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHR---PYQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~~---~~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
..-+|||+-||.|++..-+.+. |. .|.++|+++...+.-+.+..+. +...|..++ .+ .+|+++.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-----~~-~fD~Ivs 234 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-----NG-QFDRIVS 234 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-----CC-CCCEEEE
Confidence 3458999999999999877654 54 4899999999999888877542 233444433 22 4887764
No 192
>PRK04457 spermidine synthase; Provisional
Probab=81.30 E-value=3.6 Score=38.51 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=71.1
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEeC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
.-+++++=+|.|.++.-+...-- ...+.++|+|+..++..+.++.. .++.+|..++-.. .++ .+|+|+..
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~-~~~-~yD~I~~D 143 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV-HRH-STDVILVD 143 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-CCC-CCCEEEEe
Confidence 34799999999998887765321 12589999999999999988742 2467887765332 222 48999864
Q ss_pred CCCchhhhccCCCCCCChhhhhHHHHHHhccc-ccCCCcEEEEeccccccChHHHHHHHHHHHhC
Q 016377 85 PPCQPYTRQGLQKQSSDARAFSFLKILELIPH-TVKPPHMLFVENVVGFETSDTHAKMIEILANS 148 (390)
Q Consensus 85 ~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~-~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~ 148 (390)
. |+..+.. . .....++++.+.. + +|.=+++=|+.+- ...+..+++.|.+.
T Consensus 144 ~----~~~~~~~----~--~l~t~efl~~~~~~L--~pgGvlvin~~~~--~~~~~~~l~~l~~~ 194 (262)
T PRK04457 144 G----FDGEGII----D--ALCTQPFFDDCRNAL--SSDGIFVVNLWSR--DKRYDRYLERLESS 194 (262)
T ss_pred C----CCCCCCc----c--ccCcHHHHHHHHHhc--CCCcEEEEEcCCC--chhHHHHHHHHHHh
Confidence 2 2211110 0 0111333333333 4 6776676687542 22355556666543
No 193
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=80.38 E-value=2.1 Score=39.25 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=49.8
Q ss_pred ceEEeeecCchhHHHHHHhc----CCCccEEEEEcccHHHHHHHHHhcCC--CCeecCccccchhhhcc----cCccEEE
Q 016377 13 WRVLEFYSGIGGMRYSLMKA----DVSAQVVEAFDINDKANDVYELNFGH--RPYQGNIQNLTAAELDM----YGAHAWL 82 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~a----G~~~~~v~a~e~~~~a~~~~~~n~~~--~~~~~di~~~~~~~~~~----~~~D~l~ 82 (390)
.+++++=||+|-...-+-+. ++ .|+|||..+.|++.++.|-.. .-...++++++.+++.. +.+|+++
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l---~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRL---KVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCe---EEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEE
Confidence 38899999999888887753 34 499999999999999999754 33456667766554332 2466655
Q ss_pred eC
Q 016377 83 LS 84 (390)
Q Consensus 83 ~g 84 (390)
+=
T Consensus 150 ~I 151 (264)
T KOG2361|consen 150 LI 151 (264)
T ss_pred EE
Confidence 43
No 194
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=80.16 E-value=24 Score=34.63 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=90.2
Q ss_pred ceEEeeecCch-hHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC------C-------CCeecCccccchhhhcccCc
Q 016377 13 WRVLEFYSGIG-GMRYSLMKADVSAQVVEAFDINDKANDVYELNFG------H-------RPYQGNIQNLTAAELDMYGA 78 (390)
Q Consensus 13 ~~~~dlF~G~G-g~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~------~-------~~~~~di~~~~~~~~~~~~~ 78 (390)
-+|+-|=.|-| .+..=++..|++ .+.-+|.|+.-++..++|-- + .++..|..++-...-. .+
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~--qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~--~f 366 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVE--QITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD--MF 366 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcc--eEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc--cc
Confidence 34555544433 223333445766 89999999999998887631 1 2355565554322222 48
Q ss_pred cEEEeCCCCchhhhccCCCCCCChhhhhH-HHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeEEEEe
Q 016377 79 HAWLLSPPCQPYTRQGLQKQSSDARAFSF-LKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFIL 157 (390)
Q Consensus 79 D~l~~g~PCq~fS~~g~~~~~~d~r~~l~-~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l 157 (390)
|+++.-.|=..- +.-+.|+ .+|.++++.....--.++..--..+.+...|-.+...+++.||++....+
T Consensus 367 D~vIVDl~DP~t----------ps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv 436 (508)
T COG4262 367 DVVIVDLPDPST----------PSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHV 436 (508)
T ss_pred cEEEEeCCCCCC----------cchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEE
Confidence 888887772211 1222233 34556555531122344444444555555788889999999999987766
Q ss_pred CCCCcCCCccCcEEEEEEEeCCCcc
Q 016377 158 SPLQFGVPYSRPRYFCLAKRKPLSF 182 (390)
Q Consensus 158 ~a~~~G~pq~R~R~~~i~~~~~~~~ 182 (390)
--.-| -+.-|++|...+..|
T Consensus 437 ~VPTF-----GeWGf~l~~~~~~~f 456 (508)
T COG4262 437 HVPTF-----GEWGFILAAPGDADF 456 (508)
T ss_pred ecCcc-----cccceeecccccCCC
Confidence 54444 478899998887654
No 195
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=79.92 E-value=8.3 Score=34.39 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=74.8
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHh-----cCC-CCeecCccccchhhhcccCccEEEeCCCC
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELN-----FGH-RPYQGNIQNLTAAELDMYGAHAWLLSPPC 87 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n-----~~~-~~~~~di~~~~~~~~~~~~~D~l~~g~PC 87 (390)
-+||+-||-|.+.+.+...--+ ..+.|+|+....+.-.... .++ .++++|...+-..-++...+|-+..-+|+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 7999999999988888764322 2688999997766444333 344 45778988866555554579999999999
Q ss_pred chhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhC--Ccee
Q 016377 88 QPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANS--DYLT 152 (390)
Q Consensus 88 q~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~--GY~~ 152 (390)
.-+-....++.+-. ..++..+.++++. .-.+.+.=.+.. .+..+++.|... +|..
T Consensus 99 PWpK~rH~krRl~~--~~fl~~~~~~L~~---gG~l~~~TD~~~-----y~~~~~~~~~~~~~~f~~ 155 (195)
T PF02390_consen 99 PWPKKRHHKRRLVN--PEFLELLARVLKP---GGELYFATDVEE-----YAEWMLEQFEESHPGFEN 155 (195)
T ss_dssp ---SGGGGGGSTTS--HHHHHHHHHHEEE---EEEEEEEES-HH-----HHHHHHHHHHHHSTTEEE
T ss_pred CCcccchhhhhcCC--chHHHHHHHHcCC---CCEEEEEeCCHH-----HHHHHHHHHHhcCcCeEE
Confidence 87765543333322 2334445555544 344544444433 477788888773 4443
No 196
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=79.40 E-value=2.3 Score=41.45 Aligned_cols=43 Identities=35% Similarity=0.435 Sum_probs=36.2
Q ss_pred CceEEeeecCch--hHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC
Q 016377 12 AWRVLEFYSGIG--GMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (390)
Q Consensus 12 ~~~~~dlF~G~G--g~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~ 57 (390)
..+|+|-|||.| |...+.+. |.. .|+.+|++++|.++-+.|.-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~-~~~--~v~lNDisp~Avelik~Nv~ 97 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET-GVV--KVVLNDISPKAVELIKENVR 97 (380)
T ss_pred CeEEeecccccchhHhhhhhhc-Ccc--EEEEccCCHHHHHHHHHHHH
Confidence 678999999999 77777654 543 79999999999999999974
No 197
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=77.26 E-value=3.3 Score=36.16 Aligned_cols=122 Identities=19% Similarity=0.176 Sum_probs=65.5
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-CCeecCccccch-hhhcc------cCccEE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTA-AELDM------YGAHAW 81 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~-~~~~~------~~~D~l 81 (390)
....+++||.|+.||++.-+.+.+-....|+|+|+.+.. ..+. ..+++|+.+... +.+.+ ..+|++
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv 95 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLV 95 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEE
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cccceeeeecccchhhHHHhhhhhccccccCccee
Confidence 356899999999999999999988323379999998761 1122 345777766432 12222 258888
Q ss_pred EeC--CCCchhhhccCCCCCCCh--hhhhHHHHHHhc-ccccCCCcE-EEEeccccccChHHHHHHHHHHH
Q 016377 82 LLS--PPCQPYTRQGLQKQSSDA--RAFSFLKILELI-PHTVKPPHM-LFVENVVGFETSDTHAKMIEILA 146 (390)
Q Consensus 82 ~~g--~PCq~fS~~g~~~~~~d~--r~~l~~~~~~~i-~~~~~~P~~-~~~ENV~~~~~~~~~~~~~~~l~ 146 (390)
+.- |+|++.. . .|. ...|....+.++ +.+ +|.- +++--..+.........+...++
T Consensus 96 ~~D~~~~~~g~~------~-~d~~~~~~l~~~~l~~a~~~L--~~gG~~v~K~~~~~~~~~~~~~l~~~F~ 157 (181)
T PF01728_consen 96 LSDMAPNVSGDR------N-IDEFISIRLILSQLLLALELL--KPGGTFVIKVFKGPEIEELIYLLKRCFS 157 (181)
T ss_dssp EE-------SSH------H-SSHHHHHHHHHHHHHHHHHHH--CTTEEEEEEESSSTTSHHHHHHHHHHHH
T ss_pred ccccccCCCCch------h-hHHHHHHHHHHHHHHHHHhhh--cCCCEEEEEeccCccHHHHHHHHHhCCe
Confidence 753 4554432 1 122 124455555444 334 5654 55555444322233333444333
No 198
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=75.87 E-value=26 Score=32.75 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=67.0
Q ss_pred CceEEeeecCchhHHHHHHhc-----CCCccEEEEEcccHHHHHHHHHhc---CC------CCeecCccccchhhhcccC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA-----DVSAQVVEAFDINDKANDVYELNF---GH------RPYQGNIQNLTAAELDMYG 77 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a-----G~~~~~v~a~e~~~~a~~~~~~n~---~~------~~~~~di~~~~~~~~~~~~ 77 (390)
.+++||+.+|.|-...++-+. |-.-..|..+|++++-...=+..- |- ..+++|.+++. +++..
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp---Fdd~s 177 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP---FDDDS 177 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC---CCCCc
Confidence 489999999999999998874 221247999999999877766665 21 23566888885 55446
Q ss_pred ccEEEeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEec
Q 016377 78 AHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVEN 128 (390)
Q Consensus 78 ~D~l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~EN 128 (390)
+|..+.++ |.+ +.-|... -+.+..|.++- .-+++.||=
T Consensus 178 ~D~yTiaf--------GIR-N~th~~k-~l~EAYRVLKp---GGrf~cLeF 215 (296)
T KOG1540|consen 178 FDAYTIAF--------GIR-NVTHIQK-ALREAYRVLKP---GGRFSCLEF 215 (296)
T ss_pred ceeEEEec--------cee-cCCCHHH-HHHHHHHhcCC---CcEEEEEEc
Confidence 88887553 222 2223222 26777776664 457777763
No 199
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=75.09 E-value=6.6 Score=35.48 Aligned_cols=75 Identities=15% Similarity=0.047 Sum_probs=49.8
Q ss_pred CCCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
+...+|||+-+|.|=.+.-+... |-. -.|.++|+++.-++.-+.|+.. .++.+|...--++. ..+|.|+
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~-g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~---apfD~I~ 146 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPV-GRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE---APFDRII 146 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTT-EEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG----SEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCcc-ceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC---CCcCEEE
Confidence 34579999999999888777764 432 1588999999888877777642 34677766543221 2499999
Q ss_pred eCCCCc
Q 016377 83 LSPPCQ 88 (390)
Q Consensus 83 ~g~PCq 88 (390)
.+.-|.
T Consensus 147 v~~a~~ 152 (209)
T PF01135_consen 147 VTAAVP 152 (209)
T ss_dssp ESSBBS
T ss_pred Eeeccc
Confidence 886653
No 200
>PHA01634 hypothetical protein
Probab=73.88 E-value=7.2 Score=32.29 Aligned_cols=49 Identities=10% Similarity=0.037 Sum_probs=42.9
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCe
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY 61 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~ 61 (390)
..-+|+|.=|++|..++=|.-.|.+ .|+|+|.+++-.+.++.|.....+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHhhhhee
Confidence 3457999999999999999999966 999999999999999998876443
No 201
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=71.15 E-value=8.1 Score=35.89 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=73.5
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccc-hhhhcccCccEE
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLT-AAELDMYGAHAW 81 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~-~~~~~~~~~D~l 81 (390)
..-+|+|-=.|.|+++..|.++ |-.. .|+.+|+.++-++.-+.|+.. .+..+||.+-- .+++.. ++|.+
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G-~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~-~~Dav 117 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTG-HVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELES-DFDAV 117 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TT-SEEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCe-EEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccC-cccEE
Confidence 4568999999999999999975 2212 699999999999999999742 24578886432 223322 58988
Q ss_pred EeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCc
Q 016377 82 LLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDY 150 (390)
Q Consensus 82 ~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY 150 (390)
+.-.| ++ +.-+.++.+.++ +|--.+.==+|-+. -.+..+..|++.|+
T Consensus 118 fLDlp--------------~P-w~~i~~~~~~L~----~~gG~i~~fsP~ie---Qv~~~~~~L~~~gf 164 (247)
T PF08704_consen 118 FLDLP--------------DP-WEAIPHAKRALK----KPGGRICCFSPCIE---QVQKTVEALREHGF 164 (247)
T ss_dssp EEESS--------------SG-GGGHHHHHHHE-----EEEEEEEEEESSHH---HHHHHHHHHHHTTE
T ss_pred EEeCC--------------CH-HHHHHHHHHHHh----cCCceEEEECCCHH---HHHHHHHHHHHCCC
Confidence 87666 22 234666777662 23333333355553 26678889999996
No 202
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=71.03 E-value=10 Score=37.06 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=59.4
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCC-cc--EEEEEcccHHHHHHHHHhcC---C---CCeecCccccchh------hhc
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVS-AQ--VVEAFDINDKANDVYELNFG---H---RPYQGNIQNLTAA------ELD 74 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~-~~--~v~a~e~~~~a~~~~~~n~~---~---~~~~~di~~~~~~------~~~ 74 (390)
+..=+|||+||-.||=+..+-++.++ ++ .|.|+|.|..-+..+.+-.. . .+...|+...... +..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 44557999999999999999998874 23 69999999998877766542 1 1233344433222 112
Q ss_pred ccCccEEEeCCCCchhhhccC
Q 016377 75 MYGAHAWLLSPPCQPYTRQGL 95 (390)
Q Consensus 75 ~~~~D~l~~g~PCq~fS~~g~ 95 (390)
...+|=+..--||.+=|..-+
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk 254 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRK 254 (375)
T ss_pred hhhcceeEEecccCCCccccc
Confidence 224899999999998865544
No 203
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=70.46 E-value=50 Score=31.40 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=62.3
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEEeC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
.-+++|+-||.|.++..+.+..-+. .+.++|. +..++.-+.|... ..+.+|+.+. .++. .|+++.+
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~---~~~~--~D~v~~~ 222 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE---SYPE--ADAVLFC 222 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCC-EEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC---CCCC--CCEEEeE
Confidence 4599999999999999998875322 3677887 6777776666532 2356776653 2343 6877653
Q ss_pred CCCchhhhccCCCCCCCh-hhhhHHHHHHhcccccCCCcEEEEeccc
Q 016377 85 PPCQPYTRQGLQKQSSDA-RAFSFLKILELIPHTVKPPHMLFVENVV 130 (390)
Q Consensus 85 ~PCq~fS~~g~~~~~~d~-r~~l~~~~~~~i~~~~~~P~~~~~ENV~ 130 (390)
--. ....++ ...++.++.+.++- .-++++.|.|.
T Consensus 223 ~~l---------h~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~ 257 (306)
T TIGR02716 223 RIL---------YSANEQLSTIMCKKAFDAMRS---GGRLLILDMVI 257 (306)
T ss_pred hhh---------hcCChHHHHHHHHHHHHhcCC---CCEEEEEEecc
Confidence 211 112222 23456666665543 46888888764
No 204
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=68.36 E-value=71 Score=30.02 Aligned_cols=125 Identities=18% Similarity=0.100 Sum_probs=72.4
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCCCCeecCc---cccc--hhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPYQGNI---QNLT--AAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di---~~~~--~~~~~~~~~D~l~~g 84 (390)
..-+|||+=||.|....++.+. + ..+.+.++|.++.+.+..+.-.....-.... ..+. ...+. ..|+++++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 4458999999999988888763 3 3447899999999998766655432111111 1111 11222 25999987
Q ss_pred CCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCcee
Q 016377 85 PPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLT 152 (390)
Q Consensus 85 ~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~ 152 (390)
.-=...+ +..|..++..+.+ .. .+..+++|.=... .......+.+.|.+.|..+
T Consensus 110 ~~L~EL~--------~~~r~~lv~~LW~---~~--~~~LVlVEpGt~~-Gf~~i~~aR~~l~~~~~~v 163 (274)
T PF09243_consen 110 YVLNELP--------SAARAELVRSLWN---KT--APVLVLVEPGTPA-GFRRIAEARDQLLEKGAHV 163 (274)
T ss_pred hhhhcCC--------chHHHHHHHHHHH---hc--cCcEEEEcCCChH-HHHHHHHHHHHHhhCCCce
Confidence 4321111 1334444333333 34 5679999976432 1224556667776666554
No 205
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=67.49 E-value=12 Score=36.38 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=48.6
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-CCeecCccccchhhhcccCccEEEeCCCCc
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTAAELDMYGAHAWLLSPPCQ 88 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~~~~~~~~~D~l~~g~PCq 88 (390)
....+++||-|+.||++.-+.+.|. .|+|+|..+-+-.. .+.|. ..+.+|-....+. . ..+|+++.---|+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~l~~~L--~~~~~V~h~~~d~fr~~p~--~-~~vDwvVcDmve~ 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGPMAQSL--MDTGQVEHLRADGFKFRPP--R-KNVDWLVCDMVEK 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechhcCHhh--hCCCCEEEEeccCcccCCC--C-CCCCEEEEecccC
Confidence 4567999999999999999999996 49999966544221 23333 2344555444432 2 2589988665554
Q ss_pred hh
Q 016377 89 PY 90 (390)
Q Consensus 89 ~f 90 (390)
+.
T Consensus 282 P~ 283 (357)
T PRK11760 282 PA 283 (357)
T ss_pred HH
Confidence 43
No 206
>PLN03075 nicotianamine synthase; Provisional
Probab=67.21 E-value=14 Score=35.33 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=48.6
Q ss_pred CCceEEeeecCchhHHHHHHhcCC-CccEEEEEcccHHHHHHHHHhcCC--------CCeecCccccchhhhcccCccEE
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADV-SAQVVEAFDINDKANDVYELNFGH--------RPYQGNIQNLTAAELDMYGAHAW 81 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~-~~~~v~a~e~~~~a~~~~~~n~~~--------~~~~~di~~~~~~~~~~~~~D~l 81 (390)
..=+|+|+=||.|+.+.-...++. .--.+.++|+|+.+++.-++++.. ....+|+.++... +. ++|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-l~--~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-LK--EYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-cC--CcCEE
Confidence 456799999998877666554332 222588999999999988888832 2356777775322 22 59998
Q ss_pred EeC
Q 016377 82 LLS 84 (390)
Q Consensus 82 ~~g 84 (390)
+.=
T Consensus 200 F~~ 202 (296)
T PLN03075 200 FLA 202 (296)
T ss_pred EEe
Confidence 843
No 207
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=67.01 E-value=14 Score=30.81 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=49.2
Q ss_pred CCCCceEEeeecCchhHHHHHHh-----c-CCCccEEEEEcccHHHHHHHHHhcCC---------CCeecCccccchhhh
Q 016377 9 DGEAWRVLEFYSGIGGMRYSLMK-----A-DVSAQVVEAFDINDKANDVYELNFGH---------RPYQGNIQNLTAAEL 73 (390)
Q Consensus 9 ~~~~~~~~dlF~G~Gg~~~g~~~-----a-G~~~~~v~a~e~~~~a~~~~~~n~~~---------~~~~~di~~~~~~~~ 73 (390)
.....+++|+.||-|=++..+.. . +. .|.++|.++...+.-...... ..+..++.+...
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 96 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNL---RVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS--- 96 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCC---eEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc---
Confidence 46788999999999988888877 3 43 589999998776555444321 111222222211
Q ss_pred cccCccEEEeCCCCchhhh
Q 016377 74 DMYGAHAWLLSPPCQPYTR 92 (390)
Q Consensus 74 ~~~~~D~l~~g~PCq~fS~ 92 (390)
....++++|=--|-+.|.
T Consensus 97 -~~~~~~~vgLHaCG~Ls~ 114 (141)
T PF13679_consen 97 -SDPPDILVGLHACGDLSD 114 (141)
T ss_pred -cCCCeEEEEeecccchHH
Confidence 224677777777877763
No 208
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=66.43 E-value=14 Score=35.45 Aligned_cols=53 Identities=15% Similarity=0.294 Sum_probs=42.3
Q ss_pred CccEEEeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHh----CCcee
Q 016377 77 GAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILAN----SDYLT 152 (390)
Q Consensus 77 ~~D~l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~----~GY~~ 152 (390)
++|+++-.|| | +||.+++.++.+. .-+++++-|.-.+ +++++...+.+ +||..
T Consensus 135 eADIVVTNPP---F--------------SLFrEyv~~Li~~--~KkFlIIGN~Nai----TYkeiFplik~nk~WlG~~~ 191 (336)
T PF13651_consen 135 EADIVVTNPP---F--------------SLFREYVAQLIEY--DKKFLIIGNINAI----TYKEIFPLIKENKIWLGYTF 191 (336)
T ss_pred cCCEEEeCCC---c--------------HHHHHHHHHHHHh--CCCEEEEeccccc----cHHHHHHHHhcCcEEecccc
Confidence 6999999999 2 5899999999998 8999999999666 46666665554 57766
No 209
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=65.11 E-value=16 Score=33.84 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=71.5
Q ss_pred CCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEEE
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
..-+|+|.=.|.|.++..|.++ |- .=.|+.+|+.++-+++-+.|+.. ....+||.+....+ ++|.++
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~-~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~----~vDav~ 168 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGP-EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE----DVDAVF 168 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCC-CceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc----ccCEEE
Confidence 4568999999999999999974 22 11799999999999999999854 12346777654332 599999
Q ss_pred eCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCc
Q 016377 83 LSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDY 150 (390)
Q Consensus 83 ~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY 150 (390)
.--| |+- ..+.++.+.+ +|--.++==+|.+- ..+.....|++.|+
T Consensus 169 LDmp--------------~PW-~~le~~~~~L-----kpgg~~~~y~P~ve---Qv~kt~~~l~~~g~ 213 (256)
T COG2519 169 LDLP--------------DPW-NVLEHVSDAL-----KPGGVVVVYSPTVE---QVEKTVEALRERGF 213 (256)
T ss_pred EcCC--------------ChH-HHHHHHHHHh-----CCCcEEEEEcCCHH---HHHHHHHHHHhcCc
Confidence 7655 332 2233444433 45433333333331 24556677777665
No 210
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=64.25 E-value=11 Score=34.74 Aligned_cols=70 Identities=19% Similarity=0.127 Sum_probs=51.0
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCC--eecCccccchhhhcccCccEEEe
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP--YQGNIQNLTAAELDMYGAHAWLL 83 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~--~~~di~~~~~~~~~~~~~D~l~~ 83 (390)
..-.++|+=|-.||++.-+-+.|.+ .|+|+|.-..=...--++-|..+ -..+++.++++++.+ .+|+++.
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~-~~d~~v~ 150 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTE-KPDLIVI 150 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHccc-CCCeEEE
Confidence 3467999999999999999999976 99999987433322223334322 245888898888876 5787773
No 211
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=63.14 E-value=17 Score=32.64 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=62.2
Q ss_pred CceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcc---cCccE
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDM---YGAHA 80 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~---~~~D~ 80 (390)
.-+||++=+++|-.++-+.++ .-+. .|+++|.|+.-.+.-+.|+.. .++.+|..++-+.-..+ ..+|+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g-~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDG-KITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTS-EEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccc-eEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 458999999999888888875 1112 699999999988888888742 24567776654332221 25898
Q ss_pred EEeCCCCchhhhccCCCCCCChhhhhHHHHHHhc-ccccCCCcEEEEeccc
Q 016377 81 WLLSPPCQPYTRQGLQKQSSDARAFSFLKILELI-PHTVKPPHMLFVENVV 130 (390)
Q Consensus 81 l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i-~~~~~~P~~~~~ENV~ 130 (390)
++.- .++. .+..+++.+ ..+ +.--++++.||-
T Consensus 125 VFiD----------------a~K~-~y~~y~~~~~~ll-~~ggvii~DN~l 157 (205)
T PF01596_consen 125 VFID----------------ADKR-NYLEYFEKALPLL-RPGGVIIADNVL 157 (205)
T ss_dssp EEEE----------------STGG-GHHHHHHHHHHHE-EEEEEEEEETTT
T ss_pred EEEc----------------cccc-chhhHHHHHhhhc-cCCeEEEEcccc
Confidence 8832 2222 234433332 333 134788999994
No 212
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=61.85 E-value=15 Score=34.62 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=38.5
Q ss_pred CCCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcccCccEE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDMYGAHAW 81 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~~~~D~l 81 (390)
+..-+|||+=||-||++.=+.+. |.+ |.++.+++.-.+..+..... .+...|..+++. .+|-|
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~---v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~------~fD~I 131 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGCH---VTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG------KFDRI 131 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--E---EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------S-SEE
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCcE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC------CCCEE
Confidence 34568999999999999988887 864 88899988777766555432 234556655543 37776
Q ss_pred E
Q 016377 82 L 82 (390)
Q Consensus 82 ~ 82 (390)
+
T Consensus 132 v 132 (273)
T PF02353_consen 132 V 132 (273)
T ss_dssp E
T ss_pred E
Confidence 6
No 213
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=61.82 E-value=14 Score=33.55 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=35.1
Q ss_pred CCCCceEEeeecCchhH--HHHHHhcCCCccEEEEEcccHHHHHHHHHhcC
Q 016377 9 DGEAWRVLEFYSGIGGM--RYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (390)
Q Consensus 9 ~~~~~~~~dlF~G~Gg~--~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~ 57 (390)
...++++-|=|||.|.+ .+||-...- ..-|+|.|+|++|.+.-++|..
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~-l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRR-LRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGG-EEEEEEEES-HHHHHHHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHH-HHhHhcccCCHHHHHHHHHhhh
Confidence 46789999999999976 456654332 5589999999999999999963
No 214
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=61.36 E-value=9 Score=35.69 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=33.8
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHH---HHHHHhcC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKAN---DVYELNFG 57 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~---~~~~~n~~ 57 (390)
+.--++|+|||.|-.+.=|..+|-+ |.|+|+....- ++|-.|..
T Consensus 27 s~k~f~DiFaGtGVV~~~fkk~~n~---iiaNDle~ysylln~~yi~N~~ 73 (330)
T COG3392 27 SGKIFCDIFAGTGVVGRFFKKAGNK---IIANDLEYYSYLLNQNYIGNIQ 73 (330)
T ss_pred CCCeeeeeccCccHHHHHHHHhcch---hhhchHHHHHHHHHHHHhhccc
Confidence 3336999999999999999999986 88999886653 44444443
No 215
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=57.86 E-value=5.6 Score=40.25 Aligned_cols=52 Identities=31% Similarity=0.372 Sum_probs=41.8
Q ss_pred cccCCCCCceEEeeecCch--hHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC
Q 016377 5 MCKNDGEAWRVLEFYSGIG--GMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH 58 (390)
Q Consensus 5 ~~~~~~~~~~~~dlF~G~G--g~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~ 58 (390)
..+.....+++||-+|++| ++..+-+-.|+. -|.|+|.++.|+++-+.|...
T Consensus 103 ~~~~~~~~l~vLealsAtGlrslRya~El~~v~--~v~AnD~~~~aV~~i~~Nv~~ 156 (525)
T KOG1253|consen 103 LLKREEKSLRVLEALSATGLRSLRYAKELPGVR--QVVANDLNENAVTSIQRNVEL 156 (525)
T ss_pred hhhhccCcchHHHHhhhhhHHHHHHHHHhcchh--hhcccCCCHHHHHHHHhhhhh
Confidence 4456677899999999999 555555566754 899999999999999999653
No 216
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=56.91 E-value=25 Score=33.34 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=36.1
Q ss_pred CCCceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcC
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFG 57 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~ 57 (390)
+...++||+=||-|++++=+.+. |.+ |.++++++.-.+..+...-
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~---V~GvTlS~~Q~~~~~~r~~ 116 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVT---VVGVTLSEEQLAYAEKRIA 116 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCE---EEEeeCCHHHHHHHHHHHH
Confidence 45689999999999988766554 664 8999999998888888653
No 217
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.62 E-value=61 Score=29.72 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=56.3
Q ss_pred EEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhcc---cCccEEEeC
Q 016377 15 VLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELDM---YGAHAWLLS 84 (390)
Q Consensus 15 ~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~~---~~~D~l~~g 84 (390)
-+-.|+|.+.+..|+.-.--- .|+++|+|+++.+....-+.- ..++++..+.-.+-+.+ ..+|+.+.
T Consensus 79 elGvfTGySaL~~Alalp~dG--rv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFv- 155 (237)
T KOG1663|consen 79 ELGVFTGYSALAVALALPEDG--RVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFV- 155 (237)
T ss_pred EEecccCHHHHHHHHhcCCCc--eEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEE-
Confidence 455688888888887754322 699999999999887554421 23444444432222222 13555552
Q ss_pred CCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEecc
Q 016377 85 PPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV 129 (390)
Q Consensus 85 ~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV 129 (390)
-+|.++.. ..+.+.++-+ +.--++++-||
T Consensus 156 --------------DadK~nY~-~y~e~~l~Ll-r~GGvi~~DNv 184 (237)
T KOG1663|consen 156 --------------DADKDNYS-NYYERLLRLL-RVGGVIVVDNV 184 (237)
T ss_pred --------------ccchHHHH-HHHHHHHhhc-ccccEEEEecc
Confidence 13444432 4445666666 23578889997
No 218
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=56.55 E-value=36 Score=31.80 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=32.1
Q ss_pred CCCceEEeeecCchh----HHHHHHhcCCC----ccEEEEEcccHHHHHHHHHh
Q 016377 10 GEAWRVLEFYSGIGG----MRYSLMKADVS----AQVVEAFDINDKANDVYELN 55 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg----~~~g~~~aG~~----~~~v~a~e~~~~a~~~~~~n 55 (390)
...++|+|+-||.|- +.+-+.+.+-. -..|.|+|+++.+++.-+..
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 456999999999995 33334443210 11599999999999877765
No 219
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=56.38 E-value=19 Score=29.22 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=31.4
Q ss_pred EEEEeccccccChHHHHHHHHHHHhCCceeEEE-EeCCCCcCCC
Q 016377 123 MLFVENVVGFETSDTHAKMIEILANSDYLTQEF-ILSPLQFGVP 165 (390)
Q Consensus 123 ~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~-~l~a~~~G~p 165 (390)
-+++||-||- +....+.|.+.|-+++.. +-++.+||+-
T Consensus 7 SvFlENk~GR-----L~~~~~~L~eagINiRA~tiAdt~dFGIi 45 (142)
T COG4747 7 SVFLENKPGR-----LASVANKLKEAGINIRAFTIADTGDFGII 45 (142)
T ss_pred EEEecCCcch-----HHHHHHHHHHcCCceEEEEeccccCcceE
Confidence 4789999996 556778899999999866 7799999963
No 220
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=56.30 E-value=81 Score=32.58 Aligned_cols=127 Identities=11% Similarity=0.106 Sum_probs=76.9
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHH-----HHhcCC-CCeecCccccchhhhcccCccEEEeC
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVY-----ELNFGH-RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~-----~~n~~~-~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
....++|+-||-|++.+.+...--+ ..+.|+|+....+..- ..+..+ .++..|+..+. ..+++..+|-+..-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~-~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLIL-NDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHH-HhcCcccccEEEEE
Confidence 3567999999999999888876543 2588999997743322 222222 24556655443 33565579999999
Q ss_pred CCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCC
Q 016377 85 PPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSD 149 (390)
Q Consensus 85 ~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~G 149 (390)
+|+.-+-....++.+-. ..++..+.++++. .-.+.+-=.+.. .+...+..+.+.+
T Consensus 425 FPDPWpKkrh~krRl~~--~~fl~~~~~~Lk~---gG~i~~~TD~~~-----y~~~~~~~~~~~~ 479 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFN--KERLKILQDKLKD---NGNLVFASDIEN-----YFYEAIELIQQNG 479 (506)
T ss_pred CCCCCCCCCCccccccC--HHHHHHHHHhcCC---CCEEEEEcCCHH-----HHHHHHHHHHhCC
Confidence 99988775544333322 1223344444443 344544444433 3666677777665
No 221
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=55.51 E-value=1.6e+02 Score=26.72 Aligned_cols=138 Identities=17% Similarity=0.108 Sum_probs=81.7
Q ss_pred CCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccccchhhhcccCccEEE
Q 016377 9 DGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 9 ~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
.....+++|.=||+|=.+-++-.-=|+ .|-.+|..++=+++.+..... .+++..++++.++.- ..|+||
T Consensus 53 ~~~~~~alDcGAGIGRVTk~lLl~~f~--~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~---~YDlIW 127 (218)
T PF05891_consen 53 KPKFNRALDCGAGIGRVTKGLLLPVFD--EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEG---KYDLIW 127 (218)
T ss_dssp ----SEEEEET-TTTHHHHHTCCCC-S--EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT----EEEEE
T ss_pred CCCcceEEecccccchhHHHHHHHhcC--EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCC---cEeEEE
Confidence 345788999999999999998765566 999999999988888876654 346677777766522 499999
Q ss_pred eCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCC--cEEEEeccccccC----------hHHHHHHHHHHHhCCc
Q 016377 83 LSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPP--HMLFVENVVGFET----------SDTHAKMIEILANSDY 150 (390)
Q Consensus 83 ~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P--~~~~~ENV~~~~~----------~~~~~~~~~~l~~~GY 150 (390)
||--. |. +.|+ .|+.-+.|.-+.+ +| -++|=|||..--. .+..+.+.+.|++.|+
T Consensus 128 ----~QW~l--gh---LTD~--dlv~fL~RCk~~L--~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl 194 (218)
T PF05891_consen 128 ----IQWCL--GH---LTDE--DLVAFLKRCKQAL--KPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGL 194 (218)
T ss_dssp ----EES-G--GG---S-HH--HHHHHHHHHHHHE--EEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-
T ss_pred ----ehHhh--cc---CCHH--HHHHHHHHHHHhC--cCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCC
Confidence 55542 22 3332 2333334555555 45 5777799965311 0146788888999999
Q ss_pred eeEEEEeCCCCcCCCcc
Q 016377 151 LTQEFILSPLQFGVPYS 167 (390)
Q Consensus 151 ~~~~~~l~a~~~G~pq~ 167 (390)
++-...+.. |.|..
T Consensus 195 ~~v~~~~Q~---~fP~~ 208 (218)
T PF05891_consen 195 RLVKEEKQK---GFPKE 208 (218)
T ss_dssp EEEEEEE-T---T--TT
T ss_pred EEEEecccc---CCCcc
Confidence 987665543 45543
No 222
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.40 E-value=23 Score=34.86 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=61.7
Q ss_pred ccccCCCCCceEEeeecCchhHHHHHH---h-cCCCccEEEEEcccHHHHHHHHHhcCC------CCeecCccc-cchhh
Q 016377 4 DMCKNDGEAWRVLEFYSGIGGMRYSLM---K-ADVSAQVVEAFDINDKANDVYELNFGH------RPYQGNIQN-LTAAE 72 (390)
Q Consensus 4 ~~~~~~~~~~~~~dlF~G~Gg~~~g~~---~-aG~~~~~v~a~e~~~~a~~~~~~n~~~------~~~~~di~~-~~~~~ 72 (390)
+++.+....=.|+|.+|-.|--+.=+. + .| .++|+|.|++-.++.+.-... ....+|... .++.+
T Consensus 206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~g----ki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~ 281 (413)
T KOG2360|consen 206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQG----KIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEK 281 (413)
T ss_pred hhhcCCCCCCceeeeccccccchhhHHHHhhccC----CcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCccc
Confidence 356677777889999999984433222 2 23 699999999999999887642 234677766 55666
Q ss_pred hcccCccEEEeCCCCchhhhccC
Q 016377 73 LDMYGAHAWLLSPPCQPYTRQGL 95 (390)
Q Consensus 73 ~~~~~~D~l~~g~PCq~fS~~g~ 95 (390)
+++ +..+..-|+||+--.-++
T Consensus 282 ~~~--v~~iL~DpscSgSgm~~r 302 (413)
T KOG2360|consen 282 FRD--VTYILVDPSCSGSGMVSR 302 (413)
T ss_pred ccc--eeEEEeCCCCCCCccccc
Confidence 665 999999999998554444
No 223
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=49.32 E-value=58 Score=29.58 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=73.6
Q ss_pred CCceEEeeecCchhHHH--HHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCc
Q 016377 11 EAWRVLEFYSGIGGMRY--SLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQ 88 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~--g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq 88 (390)
.++++||. |.+|. .+...+. + -|.++|+++. ...+.+.|.-+.....-.+..+|+|+.|.-
T Consensus 51 ~~lrlLEV----Gals~~N~~s~~~~-f-dvt~IDLns~---------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV-- 113 (219)
T PF11968_consen 51 PKLRLLEV----GALSTDNACSTSGW-F-DVTRIDLNSQ---------HPGILQQDFMERPLPKNESEKFDVISLSLV-- 113 (219)
T ss_pred ccceEEee----cccCCCCcccccCc-e-eeEEeecCCC---------CCCceeeccccCCCCCCcccceeEEEEEEE--
Confidence 45889986 44422 3334454 3 4899999852 335677788776432112336999987743
Q ss_pred hhhhccCCCCCCChhhhhHHHHHHhccccc--CCCcEEEEeccccccChH--HHHHHHHHHHhCCceeEEE
Q 016377 89 PYTRQGLQKQSSDARAFSFLKILELIPHTV--KPPHMLFVENVVGFETSD--THAKMIEILANSDYLTQEF 155 (390)
Q Consensus 89 ~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~--~~P~~~~~ENV~~~~~~~--~~~~~~~~l~~~GY~~~~~ 155 (390)
.|-- .....|+.+...+.++++.-. .-|..|++=--+=+.+++ ..+.+...++.+||.....
T Consensus 114 ----LNfV-P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 114 ----LNFV-PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred ----EeeC-CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 2221 123568888888888887630 012366664444444454 3467888899999965443
No 224
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=49.21 E-value=1e+02 Score=27.07 Aligned_cols=97 Identities=18% Similarity=0.323 Sum_probs=45.6
Q ss_pred Cch--hH--HHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCcccc--------------chhh-hcccCccEE
Q 016377 21 GIG--GM--RYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNL--------------TAAE-LDMYGAHAW 81 (390)
Q Consensus 21 G~G--g~--~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~--------------~~~~-~~~~~~D~l 81 (390)
|.| |+ ...|.+.|++ |.++|+|+.-++.++.-.... ....+.++ +.++ +. +.|++
T Consensus 7 GlGyvGl~~A~~lA~~G~~---V~g~D~~~~~v~~l~~g~~p~-~E~~l~~ll~~~~~~~~l~~t~~~~~ai~--~adv~ 80 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQ---VIGVDIDEEKVEALNNGELPI-YEPGLDELLKENVSAGRLRATTDIEEAIK--DADVV 80 (185)
T ss_dssp --STTHHHHHHHHHHTTSE---EEEE-S-HHHHHHHHTTSSSS--CTTHHHHHHHHHHTTSEEEESEHHHHHH--H-SEE
T ss_pred CCCcchHHHHHHHHhCCCE---EEEEeCChHHHHHHhhccccc-cccchhhhhccccccccchhhhhhhhhhh--ccceE
Confidence 555 44 4455667875 999999999988876654321 01111111 1111 33 48898
Q ss_pred EeCCCCchhhhccCCCCCCChhhhhHHHHH-HhcccccCCCcEEEEecccc
Q 016377 82 LLSPPCQPYTRQGLQKQSSDARAFSFLKIL-ELIPHTVKPPHMLFVENVVG 131 (390)
Q Consensus 82 ~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~-~~i~~~~~~P~~~~~ENV~~ 131 (390)
+.+.|...-. .+ ..+.+. +...+ .+...+ ++...+++|--..
T Consensus 81 ~I~VpTP~~~-----~~-~~Dls~-v~~a~~~i~~~l-~~~~lvV~~STvp 123 (185)
T PF03721_consen 81 FICVPTPSDE-----DG-SPDLSY-VESAIESIAPVL-RPGDLVVIESTVP 123 (185)
T ss_dssp EE----EBET-----TT-SBETHH-HHHHHHHHHHHH-CSCEEEEESSSSS
T ss_pred EEecCCCccc-----cC-CccHHH-HHHHHHHHHHHH-hhcceEEEccEEE
Confidence 8888865544 11 112233 34444 444444 3457888886533
No 225
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=48.61 E-value=84 Score=29.16 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=59.5
Q ss_pred CceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcCC-------CCeecCccccchhhhc----ccCcc
Q 016377 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH-------RPYQGNIQNLTAAELD----MYGAH 79 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~~-------~~~~~di~~~~~~~~~----~~~~D 79 (390)
.-++|++=.++|-.++.+..+ +-+. .+.++|.+++..+.-+.|+.. .++.+|..++-+.... ...+|
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g-~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDG-KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCC-EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 347999988888777766654 2112 599999999888887777742 2356666664333211 12588
Q ss_pred EEEeCCCCchhhhccCCCCCCChhhhhHHHHHHh-cccccCCCcEEEEecc
Q 016377 80 AWLLSPPCQPYTRQGLQKQSSDARAFSFLKILEL-IPHTVKPPHMLFVENV 129 (390)
Q Consensus 80 ~l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~-i~~~~~~P~~~~~ENV 129 (390)
+++.- ..+. .+..+++. +..+ +.=-++++.||
T Consensus 159 ~iFiD----------------adK~-~Y~~y~~~~l~ll-~~GGviv~DNv 191 (247)
T PLN02589 159 FIFVD----------------ADKD-NYINYHKRLIDLV-KVGGVIGYDNT 191 (247)
T ss_pred EEEec----------------CCHH-HhHHHHHHHHHhc-CCCeEEEEcCC
Confidence 88732 2222 24455543 3444 23457778999
No 226
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=48.53 E-value=1.2e+02 Score=28.48 Aligned_cols=117 Identities=12% Similarity=0.119 Sum_probs=76.4
Q ss_pred CCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCchh
Q 016377 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQPY 90 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~f 90 (390)
..+.+.|+=||=+ .++.. -. ..|...|+-+ -...++.+||+++..+ +..+||.+.+ .
T Consensus 180 ~~~vIaD~GCGEa--kiA~~--~~--~kV~SfDL~a---------~~~~V~~cDm~~vPl~---d~svDvaV~C-----L 236 (325)
T KOG3045|consen 180 KNIVIADFGCGEA--KIASS--ER--HKVHSFDLVA---------VNERVIACDMRNVPLE---DESVDVAVFC-----L 236 (325)
T ss_pred CceEEEecccchh--hhhhc--cc--cceeeeeeec---------CCCceeeccccCCcCc---cCcccEEEee-----H
Confidence 4566778755544 33331 12 2566666542 1346788999997543 3349998876 4
Q ss_pred hhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeEEEEeCCCCc
Q 016377 91 TRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQF 162 (390)
Q Consensus 91 S~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~a~~~ 162 (390)
|.+|. ++ ...+.+..|+++- .-.++|.|=-..|.+ ...+++.|..+|+.+..+-+.-..|
T Consensus 237 SLMgt--n~----~df~kEa~RiLk~---gG~l~IAEv~SRf~d---v~~f~r~l~~lGF~~~~~d~~n~~F 296 (325)
T KOG3045|consen 237 SLMGT--NL----ADFIKEANRILKP---GGLLYIAEVKSRFSD---VKGFVRALTKLGFDVKHKDVSNKYF 296 (325)
T ss_pred hhhcc--cH----HHHHHHHHHHhcc---CceEEEEehhhhccc---HHHHHHHHHHcCCeeeehhhhcceE
Confidence 67775 22 3467778888876 578888887766655 4448899999999988775444443
No 227
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=47.09 E-value=38 Score=32.64 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=44.7
Q ss_pred eecCchhHHHHHH----hcCCCccEEEEEccc-----------------------HHHHHHHHHhcCCC---CeecCccc
Q 016377 18 FYSGIGGMRYSLM----KADVSAQVVEAFDIN-----------------------DKANDVYELNFGHR---PYQGNIQN 67 (390)
Q Consensus 18 lF~G~Gg~~~g~~----~aG~~~~~v~a~e~~-----------------------~~a~~~~~~n~~~~---~~~~di~~ 67 (390)
|--|+||+..-+- ..||. -+-.+|+| +.|++.....+|+- ++..+|++
T Consensus 44 LviGAGGLGCElLKnLal~gF~--~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIqd 121 (422)
T KOG2015|consen 44 LVIGAGGLGCELLKNLALSGFR--QLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQD 121 (422)
T ss_pred EEEccCcccHHHHHhHHhhccc--eeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecchhc
Confidence 3447787765443 25876 77777776 55667777778873 45789999
Q ss_pred cchhhhcccCccEEEeCC
Q 016377 68 LTAAELDMYGAHAWLLSP 85 (390)
Q Consensus 68 ~~~~~~~~~~~D~l~~g~ 85 (390)
++.+-..+ +|++++|.
T Consensus 122 ~~~~FYk~--F~~iicGL 137 (422)
T KOG2015|consen 122 KPISFYKR--FDLIICGL 137 (422)
T ss_pred CCHHHHhh--hceEEecc
Confidence 88876664 99999774
No 228
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=46.14 E-value=37 Score=25.90 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=32.4
Q ss_pred EEEEeccccccChHHHHHHHHHHHhCCceeEEEEeCCCC-cCCCccCcEEEEEEE
Q 016377 123 MLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQ-FGVPYSRPRYFCLAK 176 (390)
Q Consensus 123 ~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~a~~-~G~pq~R~R~~~i~~ 176 (390)
-++.||.+|. ...+...|.+.||++..-.....+ -|+ -|+-++..
T Consensus 6 svlVeN~~GV-----L~Rit~lFsRRg~NI~SLtvg~Te~~~i----SRmtivv~ 51 (84)
T PRK13562 6 KLQVADQVST-----LNRITSAFVRLQYNIDTLHVTHSEQPGI----SNMEIQVD 51 (84)
T ss_pred EEEEECCCCH-----HHHHHHHHhccCcCeeeEEecccCCCCc----eEEEEEEe
Confidence 4689999997 678889999999999876554443 233 26666553
No 229
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=45.56 E-value=28 Score=31.37 Aligned_cols=144 Identities=18% Similarity=0.191 Sum_probs=76.1
Q ss_pred CceEEeeecCchhHHHHHHh-cCCCccEEEEEcccHHHHHHHHHhcCC-CCeecCccccch-hhh----cccCccEEE--
Q 016377 12 AWRVLEFYSGIGGMRYSLMK-ADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTA-AEL----DMYGAHAWL-- 82 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~-aG~~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~-~~~----~~~~~D~l~-- 82 (390)
..+|+||.|-.||+|.=+.+ +|-..+ |.|+|+.+=. -+++ ..+++|+++-+. +.| ....+|+++
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~-ivavDi~p~~------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD 118 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGK-IVAVDILPMK------PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSD 118 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCc-EEEEECcccc------cCCCceEEeeeccCccHHHHHHHHcCCCCcceEEec
Confidence 57899999999999995554 554322 8999999755 2333 457889887654 222 222358777
Q ss_pred eCCCCchhhhccCCCCCCChhh-hhHHHHHHhcccccCCC-cEEEEeccccccChHHHHHHHHHHHhCCceeEEEEeCCC
Q 016377 83 LSPPCQPYTRQGLQKQSSDARA-FSFLKILELIPHTVKPP-HMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPL 160 (390)
Q Consensus 83 ~g~PCq~fS~~g~~~~~~d~r~-~l~~~~~~~i~~~~~~P-~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~a~ 160 (390)
+-|. ..|.. ..+..|. .|....+.+...+. +| --|+.-=+.| ..++.++..+.++==.+......|.
T Consensus 119 ~ap~-----~~g~~-~~Dh~r~~~L~~~a~~~a~~vL-~~~G~fv~K~fqg----~~~~~~l~~~~~~F~~v~~~KP~aS 187 (205)
T COG0293 119 MAPN-----TSGNR-SVDHARSMYLCELALEFALEVL-KPGGSFVAKVFQG----EDFEDLLKALRRLFRKVKIFKPKAS 187 (205)
T ss_pred CCCC-----cCCCc-cccHHHHHHHHHHHHHHHHHee-CCCCeEEEEEEeC----CCHHHHHHHHHHhhceeEEecCccc
Confidence 3331 12221 2233443 34444555555442 33 3344333322 2455666655543222333333221
Q ss_pred CcCCCccCcEEEEEEEe
Q 016377 161 QFGVPYSRPRYFCLAKR 177 (390)
Q Consensus 161 ~~G~pq~R~R~~~i~~~ 177 (390)
-+.++ -+|+|+..
T Consensus 188 ---R~~S~-E~y~v~~~ 200 (205)
T COG0293 188 ---RKRSR-EIYLVAKG 200 (205)
T ss_pred ---cCCCc-eEEEEEec
Confidence 34444 56666654
No 230
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=44.77 E-value=44 Score=31.37 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=41.7
Q ss_pred CCCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC
Q 016377 8 NDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH 58 (390)
Q Consensus 8 ~~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~ 58 (390)
.....-.|+|-|+|.|-...+..++|-. ..++|+++..++.-...+..
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r~---~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGRR---FIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCCc---eEEEecCHHHHHHHHHHHHh
Confidence 5667789999999999999999999976 56699999999888888764
No 231
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=43.52 E-value=61 Score=30.72 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=52.1
Q ss_pred cccCCCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCC----------CeecCccccchhhhc
Q 016377 5 MCKNDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHR----------PYQGNIQNLTAAELD 74 (390)
Q Consensus 5 ~~~~~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~----------~~~~di~~~~~~~~~ 74 (390)
|+.....+ +||-+=-|.||+..-+..-.- .+-+..||+|+.-++.-+.-+|.. ++.+|..++-.+.-.
T Consensus 71 ~~ah~~pk-~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~ 148 (282)
T COG0421 71 LLAHPNPK-RVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE 148 (282)
T ss_pred hhhCCCCC-eEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC
Confidence 44445554 888888888887776665442 448999999999999988888752 345566665443222
Q ss_pred ccCccEEEeC
Q 016377 75 MYGAHAWLLS 84 (390)
Q Consensus 75 ~~~~D~l~~g 84 (390)
.+|+|+.-
T Consensus 149 --~fDvIi~D 156 (282)
T COG0421 149 --KFDVIIVD 156 (282)
T ss_pred --cCCEEEEc
Confidence 49998853
No 232
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=42.54 E-value=3.4 Score=31.86 Aligned_cols=73 Identities=11% Similarity=0.046 Sum_probs=37.3
Q ss_pred EeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC----CC--eecCccccchhhhcccCccEEEeCCCCch
Q 016377 16 LEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH----RP--YQGNIQNLTAAELDMYGAHAWLLSPPCQP 89 (390)
Q Consensus 16 ~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~----~~--~~~di~~~~~~~~~~~~~D~l~~g~PCq~ 89 (390)
||+=||.|.+..-+.+.. ....+.++|+++.+++..+.++.. .. +..+..+....... ..+|+++++.-.+-
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPP-ESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC-----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccc-cccceehhhhhHhh
Confidence 588899999998888872 122577999999998544444432 11 12222222111111 25999998755443
Q ss_pred h
Q 016377 90 Y 90 (390)
Q Consensus 90 f 90 (390)
+
T Consensus 79 l 79 (99)
T PF08242_consen 79 L 79 (99)
T ss_dssp -
T ss_pred h
Confidence 3
No 233
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=42.24 E-value=28 Score=27.31 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=25.0
Q ss_pred EEEEeccccccChHHHHHHHHHHHhCCceeEEEEe
Q 016377 123 MLFVENVVGFETSDTHAKMIEILANSDYLTQEFIL 157 (390)
Q Consensus 123 ~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l 157 (390)
-++.||.+|+ ...+...|.+.||+++.-..
T Consensus 12 svlv~N~pGV-----L~RIaglFsRRgyNIeSLtv 41 (96)
T PRK08178 12 ELTVRNHPGV-----MSHVCGLFARRAFNVEGILC 41 (96)
T ss_pred EEEEECCcCH-----HHHHHHHHhcCCcCeeeEEE
Confidence 4688999997 67888999999999987543
No 234
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=40.54 E-value=14 Score=35.86 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=44.9
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHH-------HHHHHhcCC--------CCeecCccccchhhhcccCc
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKAN-------DVYELNFGH--------RPYQGNIQNLTAAELDMYGA 78 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~-------~~~~~n~~~--------~~~~~di~~~~~~~~~~~~~ 78 (390)
-|.|=|.|.||+-+....-|- .|.+.|||-.-+ ..-++||.. .+..+|...-..-. +..+
T Consensus 211 ivyDPFVGTGslLvsaa~FGa---~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs--n~~f 285 (421)
T KOG2671|consen 211 IVYDPFVGTGSLLVSAAHFGA---YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS--NLKF 285 (421)
T ss_pred EEecCccccCceeeehhhhcc---eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh--ccee
Confidence 489999999999888877775 578888884333 345667642 23444544432111 2259
Q ss_pred cEEEeCCC
Q 016377 79 HAWLLSPP 86 (390)
Q Consensus 79 D~l~~g~P 86 (390)
|.|+.-||
T Consensus 286 DaIvcDPP 293 (421)
T KOG2671|consen 286 DAIVCDPP 293 (421)
T ss_pred eEEEeCCC
Confidence 99999999
No 235
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=40.41 E-value=2.7e+02 Score=24.92 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=67.7
Q ss_pred EEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC-----C--CeecC-ccccchhhhcccCccEEEeCCC
Q 016377 15 VLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH-----R--PYQGN-IQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 15 ~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~-----~--~~~~d-i~~~~~~~~~~~~~D~l~~g~P 86 (390)
|+|..|-=|=+...|...|. ...++|+|+.+...+.-+.|... . +..+| ...+.+.+ ++|+++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e----~~d~iv---- 71 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGE----DVDTIV---- 71 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG-------EEE----
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCC----CCCEEE----
Confidence 57888888999999999997 66899999998887777776532 1 23455 33333322 155544
Q ss_pred CchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeEEEE
Q 016377 87 CQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFI 156 (390)
Q Consensus 87 Cq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~ 156 (390)
.||.+ +.|..+++.-......+.+-|++--+. ....+.+.|.+.||.+....
T Consensus 72 -----IAGMG-------G~lI~~ILe~~~~~~~~~~~lILqP~~------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 72 -----IAGMG-------GELIIEILEAGPEKLSSAKRLILQPNT------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp -----EEEE--------HHHHHHHHHHTGGGGTT--EEEEEESS-------HHHHHHHHHHTTEEEEEEE
T ss_pred -----EecCC-------HHHHHHHHHhhHHHhccCCeEEEeCCC------ChHHHHHHHHHCCCEEEEeE
Confidence 23332 356777665443321123346654442 36678888999999886543
No 236
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=39.31 E-value=51 Score=24.99 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=39.3
Q ss_pred ecCchhH----HHHHHhcCCC-ccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCchhh
Q 016377 19 YSGIGGM----RYSLMKADVS-AQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQPYT 91 (390)
Q Consensus 19 F~G~Gg~----~~g~~~aG~~-~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~fS 91 (390)
|-|+|-+ ..||..+|+. .++...++.+++..+-+...++-.....|..+ .+. +.|+++.+.|=|.+.
T Consensus 4 iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~--~advvilav~p~~~~ 75 (96)
T PF03807_consen 4 IIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEE----AAQ--EADVVILAVKPQQLP 75 (96)
T ss_dssp EESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHH----HHH--HTSEEEE-S-GGGHH
T ss_pred EECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHH----hhc--cCCEEEEEECHHHHH
Confidence 4477744 4455667832 22555779999999999998883333212222 233 389999887754444
No 237
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=38.93 E-value=58 Score=24.32 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=25.7
Q ss_pred EEEEeccccccChHHHHHHHHHHHhCCceeEEEEeC
Q 016377 123 MLFVENVVGFETSDTHAKMIEILANSDYLTQEFILS 158 (390)
Q Consensus 123 ~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~ 158 (390)
-++.||-||. ...+...|.+.||++..-...
T Consensus 6 si~v~n~pGV-----L~Ri~~lf~rRgfNI~Sl~vg 36 (76)
T PRK06737 6 SLVIHNDPSV-----LLRISGIFARRGYYISSLNLN 36 (76)
T ss_pred EEEEecCCCH-----HHHHHHHHhccCcceEEEEec
Confidence 4688999997 778999999999999865544
No 238
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=36.11 E-value=40 Score=31.56 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=31.6
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~ 57 (390)
+.+|-|+|+|+..+.+. .+ -++.+|+|++=+..|+.--.
T Consensus 28 ~yvEPF~Gggsv~l~~~---~~--~~~lND~n~~Li~~~~~i~~ 66 (266)
T TIGR00571 28 CLVEPFVGGGAVFFNLN---PK--RYLLNDINEDLINLYKAIKN 66 (266)
T ss_pred EEEEecCCcchhheeec---Cc--EEEEecCCHHHHHHHHHHHH
Confidence 79999999999888663 23 47789999999999887653
No 239
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=35.20 E-value=1.4e+02 Score=31.61 Aligned_cols=63 Identities=17% Similarity=0.315 Sum_probs=43.5
Q ss_pred eecCchhHHH--H--HHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchh---hhcccCccEEEeCCC
Q 016377 18 FYSGIGGMRY--S--LMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAA---ELDMYGAHAWLLSPP 86 (390)
Q Consensus 18 lF~G~Gg~~~--g--~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~---~~~~~~~D~l~~g~P 86 (390)
+.||.|-+.. + |.+.|++ +.++|.|++.++..+. +...++.+|.++.+.- .+. +.|+++...+
T Consensus 404 II~G~Gr~G~~va~~L~~~g~~---vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~--~A~~vv~~~~ 473 (601)
T PRK03659 404 IIVGFGRFGQVIGRLLMANKMR---ITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAE--KAEAIVITCN 473 (601)
T ss_pred EEecCchHHHHHHHHHHhCCCC---EEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCc--cCCEEEEEeC
Confidence 4577774433 3 4456775 7899999999998764 6667889999976431 233 4888886644
No 240
>PF03078 ATHILA: ATHILA ORF-1 family; InterPro: IPR004312 ATHILA is a group of Arabidopsis thaliana retrotransposons [] belonging to the Ty3/gypsy family of the long terminal repeat (LTR) class of eukaryotic retrotransposons[, ]. The central region of ATHILA retrotransposons contains two or three open reading frames (ORFs). This family represents the ORF1 product. The function of ORF1 is unknown.
Probab=34.84 E-value=45 Score=33.80 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=32.0
Q ss_pred CccccccHHHHHHhCCCCCCeecCCCC---CHHHHHHHhCCccchHH
Q 016377 334 QHLRYFTPREVANLHSFPGDFQFPHHL---SLRQRYALLGNSLSIAV 377 (390)
Q Consensus 334 ~~~R~LT~rE~aRLQgFPd~y~f~g~~---s~~~~y~qiGNAVp~~v 377 (390)
...=.||+.+.+++.|||.......++ -...-|..||+++|-..
T Consensus 138 ~~~y~lsi~~L~~i~GF~~~~~i~~~~~~~el~~~W~~ig~~~p~~~ 184 (458)
T PF03078_consen 138 GVEYSLSIKHLERIFGFPSGDEIKPDFDPEELNDFWATIGGGKPFNS 184 (458)
T ss_pred ceeeeeeHHHHHHHhCCCCccccCCCCCchHHHHHHHHhcCCCcccc
Confidence 455679999999999999875443222 23566899999976554
No 241
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=34.69 E-value=40 Score=36.30 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=39.4
Q ss_pred CCCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhc
Q 016377 8 NDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF 56 (390)
Q Consensus 8 ~~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~ 56 (390)
+-....+++|=|||.|.+-+-..+.|.+ |.|+|.+|-|.-.+++-+
T Consensus 87 ~~~~~~~~lDPfAG~GSIPlEAlRLG~~---v~AvelnPvAylfLKavl 132 (875)
T COG1743 87 TPFEGPKLLDPFAGGGSIPLEALRLGLE---VVAVELNPVAYLFLKAVL 132 (875)
T ss_pred CcccCCcccccccCCCccchHHHhcCce---eEEEecccHHHHHHHHHH
Confidence 3445678999999999999988899976 899999999988888775
No 242
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=34.31 E-value=48 Score=32.06 Aligned_cols=105 Identities=13% Similarity=0.059 Sum_probs=62.0
Q ss_pred eEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHH----HHHHHhcC--------CCCeecCccccchhhhc---ccCc
Q 016377 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKAN----DVYELNFG--------HRPYQGNIQNLTAAELD---MYGA 78 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~----~~~~~n~~--------~~~~~~di~~~~~~~~~---~~~~ 78 (390)
-+++|=||=||--+=...||+. -++++||-+-++ +-|+..+. ...+.+|-......++- +..+
T Consensus 120 ~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 4678999999999999999988 899999885544 44444332 13466777766544433 2237
Q ss_pred cEEEeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEecccc
Q 016377 79 HAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVG 131 (390)
Q Consensus 79 D~l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~ 131 (390)
||+..-+-| -|| +..+.. .=..+..+.+.+ +|-=+++-.+|.
T Consensus 198 DivScQF~~-HYa-------Fetee~-ar~~l~Nva~~L--kpGG~FIgTiPd 239 (389)
T KOG1975|consen 198 DIVSCQFAF-HYA-------FETEES-ARIALRNVAKCL--KPGGVFIGTIPD 239 (389)
T ss_pred ceeeeeeeE-eee-------eccHHH-HHHHHHHHHhhc--CCCcEEEEecCc
Confidence 877522211 121 122111 011122334455 788888888776
No 243
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=34.14 E-value=48 Score=24.73 Aligned_cols=32 Identities=0% Similarity=0.075 Sum_probs=26.0
Q ss_pred EEEEeccccccChHHHHHHHHHHHhCCceeEEEEeCC
Q 016377 123 MLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSP 159 (390)
Q Consensus 123 ~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~a 159 (390)
-++++|-||. ...+...|.+.||+++.-....
T Consensus 7 si~v~n~pGV-----L~Ri~~lf~rRGfnI~sl~v~~ 38 (76)
T PRK11152 7 TIKARFRPEV-----LERVLRVVRHRGFQVCSMNMTQ 38 (76)
T ss_pred EEEEECCccH-----HHHHHHHHhcCCeeeeeEEeee
Confidence 4678999996 7889999999999998764444
No 244
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=33.25 E-value=1.7e+02 Score=26.71 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=42.9
Q ss_pred CCceEEeeecCchhHHHHHHh----cCCCccEEEEEcc----------cHHHHHHHHHhcCCCCeecCccccchhhhccc
Q 016377 11 EAWRVLEFYSGIGGMRYSLMK----ADVSAQVVEAFDI----------NDKANDVYELNFGHRPYQGNIQNLTAAELDMY 76 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~~~g~~~----aG~~~~~v~a~e~----------~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~ 76 (390)
+..+++ ..|.|....++.+ .|.+ ++...|. |..++..++.......-..+...++.+++...
T Consensus 30 ~~~~v~--I~G~G~VG~~~a~~L~~~g~~--vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~ 105 (227)
T cd01076 30 AGARVA--IQGFGNVGSHAARFLHEAGAK--VVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLEL 105 (227)
T ss_pred cCCEEE--EECCCHHHHHHHHHHHHCCCE--EEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceee
Confidence 455555 4577866655544 5755 8988998 88888877766543111111223344444444
Q ss_pred CccEEEeCCCCc
Q 016377 77 GAHAWLLSPPCQ 88 (390)
Q Consensus 77 ~~D~l~~g~PCq 88 (390)
+.||++ ||-
T Consensus 106 ~~Dvli---p~a 114 (227)
T cd01076 106 DCDILI---PAA 114 (227)
T ss_pred cccEEE---ecC
Confidence 689998 876
No 245
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=32.99 E-value=1.4e+02 Score=28.07 Aligned_cols=42 Identities=14% Similarity=-0.023 Sum_probs=33.5
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHH
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYEL 54 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~ 54 (390)
....++|||=||.|+.+.-+.. - ++.|+|.|.++.=+.-++.
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~-~--f~~v~aTE~S~~Mr~rL~~ 134 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAP-L--FKEVYATEASPPMRWRLSK 134 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHh-h--cceEEeecCCHHHHHHHHh
Confidence 4567899999999999999954 4 4489999999877655554
No 246
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=32.34 E-value=1.2e+02 Score=30.30 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=44.5
Q ss_pred eecCchhHHHHHHh----cCCCccEEEEEcccHHHHHHHHHhcCC-CCeecCccccch---hhhcccCccEEEeCCC
Q 016377 18 FYSGIGGMRYSLMK----ADVSAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTA---AELDMYGAHAWLLSPP 86 (390)
Q Consensus 18 lF~G~Gg~~~g~~~----aG~~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~---~~~~~~~~D~l~~g~P 86 (390)
+.+|.|-+...+.+ .|.+ +..+|.+++..+.+...+++ .++.+|..+... ..+. ++|.++...+
T Consensus 235 iIiG~G~~g~~l~~~L~~~~~~---v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~--~a~~vi~~~~ 306 (453)
T PRK09496 235 MIVGGGNIGYYLAKLLEKEGYS---VKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGID--EADAFIALTN 306 (453)
T ss_pred EEECCCHHHHHHHHHHHhCCCe---EEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCc--cCCEEEECCC
Confidence 56777865555443 4654 78899999999999888755 467888875532 1233 4888888766
No 247
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=31.60 E-value=47 Score=30.84 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=31.5
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhc
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF 56 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~ 56 (390)
.=+|+|+=||.==+++-+....- -..++|+|+|...++...+-.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l 149 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFL 149 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHH
T ss_pred CchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHH
Confidence 45899998888777777665332 127999999999988877654
No 248
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=31.55 E-value=71 Score=29.57 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=37.6
Q ss_pred cCCCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC
Q 016377 7 KNDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH 58 (390)
Q Consensus 7 ~~~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~ 58 (390)
.++..+ .++|+=||.|-...|+..- ++-|.|+|.++.=.+..+.-.|.
T Consensus 30 ~~~~h~-~a~DvG~G~Gqa~~~iae~---~k~VIatD~s~~mL~~a~k~~~~ 77 (261)
T KOG3010|consen 30 RTEGHR-LAWDVGTGNGQAARGIAEH---YKEVIATDVSEAMLKVAKKHPPV 77 (261)
T ss_pred hCCCcc-eEEEeccCCCcchHHHHHh---hhhheeecCCHHHHHHhhcCCCc
Confidence 344555 7899999999878887754 44999999999999877766665
No 249
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=31.39 E-value=35 Score=31.36 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=41.8
Q ss_pred eEEeeecCchhHHHHHHhcCC--------CccEEEEEcccHHHHHHHHHhcCC-CCeecCccccchhh-h----cccCcc
Q 016377 14 RVLEFYSGIGGMRYSLMKADV--------SAQVVEAFDINDKANDVYELNFGH-RPYQGNIQNLTAAE-L----DMYGAH 79 (390)
Q Consensus 14 ~~~dlF~G~Gg~~~g~~~aG~--------~~~~v~a~e~~~~a~~~~~~n~~~-~~~~~di~~~~~~~-~----~~~~~D 79 (390)
+++||||-.|.+|.-+.+-=+ .-+.+.|+|+-+-| =.++ ..+++||++.+..+ + -+...|
T Consensus 44 rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma------PI~GV~qlq~DIT~~stae~Ii~hfggekAd 117 (294)
T KOG1099|consen 44 RVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA------PIEGVIQLQGDITSASTAEAIIEHFGGEKAD 117 (294)
T ss_pred HHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC------ccCceEEeecccCCHhHHHHHHHHhCCCCcc
Confidence 689999999999999986321 11248889987655 1222 23689999886532 2 223577
Q ss_pred EEE
Q 016377 80 AWL 82 (390)
Q Consensus 80 ~l~ 82 (390)
+++
T Consensus 118 lVv 120 (294)
T KOG1099|consen 118 LVV 120 (294)
T ss_pred EEE
Confidence 765
No 250
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=30.95 E-value=1.4e+02 Score=24.45 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=42.0
Q ss_pred ecCchhHHHHHH----hcCCCccEEEEEcccHHHHHHHHHhcCCC-CeecCccccchhhhcccCccEEEeCCCCchh
Q 016377 19 YSGIGGMRYSLM----KADVSAQVVEAFDINDKANDVYELNFGHR-PYQGNIQNLTAAELDMYGAHAWLLSPPCQPY 90 (390)
Q Consensus 19 F~G~Gg~~~g~~----~aG~~~~~v~a~e~~~~a~~~~~~n~~~~-~~~~di~~~~~~~~~~~~~D~l~~g~PCq~f 90 (390)
.-|+||+..+.. ..|++ .+.-+.-+...++.+...+++. +-..++.++. +.+. ++|+++...|....
T Consensus 17 viGaGg~ar~v~~~L~~~g~~--~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~-~~~~--~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 17 VIGAGGAARAVAAALAALGAK--EITIVNRTPERAEALAEEFGGVNIEAIPLEDLE-EALQ--EADIVINATPSGMP 88 (135)
T ss_dssp EESSSHHHHHHHHHHHHTTSS--EEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHC-HHHH--TESEEEE-SSTTST
T ss_pred EECCHHHHHHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHcCccccceeeHHHHH-HHHh--hCCeEEEecCCCCc
Confidence 346777665544 45866 7888888888778887777543 2233444443 2234 49999998885433
No 251
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=30.50 E-value=84 Score=29.08 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=42.7
Q ss_pred cCch-hHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC---CCeecCccccch-----hhhcc--cCccEEEe
Q 016377 20 SGIG-GMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH---RPYQGNIQNLTA-----AELDM--YGAHAWLL 83 (390)
Q Consensus 20 ~G~G-g~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~---~~~~~di~~~~~-----~~~~~--~~~D~l~~ 83 (390)
||+| ....-|.++|++ |....-..+.++.....++. .+..-||++-.. +.+++ .++|+|+-
T Consensus 16 SGiG~A~A~~l~~~G~~---vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiLvN 87 (246)
T COG4221 16 SGIGEATARALAEAGAK---VVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDILVN 87 (246)
T ss_pred chHHHHHHHHHHHCCCe---EEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccEEEe
Confidence 5555 455667788975 66778999999999999984 456678887643 22222 16999984
No 252
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=30.36 E-value=1.4e+02 Score=27.34 Aligned_cols=80 Identities=13% Similarity=0.019 Sum_probs=57.4
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHh-----cCC-CCeecCccccchhhhcccCccEEEeCCC
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELN-----FGH-RPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n-----~~~-~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
..+||+-||.|.+-.++...--+. -..|+|+....+.....- .++ .+++.|..++...-+++..+|-|..-+|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 579999999999998888765432 477889886654433322 222 4578899988776666557999999999
Q ss_pred Cchhhhc
Q 016377 87 CQPYTRQ 93 (390)
Q Consensus 87 Cq~fS~~ 93 (390)
+.-+-.-
T Consensus 129 DPWpKkR 135 (227)
T COG0220 129 DPWPKKR 135 (227)
T ss_pred CCCCCcc
Confidence 8877543
No 253
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=28.68 E-value=1.8e+02 Score=26.43 Aligned_cols=102 Identities=15% Similarity=0.189 Sum_probs=60.0
Q ss_pred CCCceEEeeecCchhHHHHHHhcCC-CccEEEEEcccHHHHHHHHHhcCCC-------Cee-cCccccchhhhcccCccE
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADV-SAQVVEAFDINDKANDVYELNFGHR-------PYQ-GNIQNLTAAELDMYGAHA 80 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~-~~~~v~a~e~~~~a~~~~~~n~~~~-------~~~-~di~~~~~~~~~~~~~D~ 80 (390)
...-+++++=.++|=.++=+..+=- +. .+.++|+|++-.+.-+.|+... .+. +|..++-.. .....+|+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g-~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~~~~~fDl 135 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDG-RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-LLDGSFDL 135 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCC-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-ccCCCccE
Confidence 3556789988887755554444311 22 6999999999999999998642 223 354444332 11225888
Q ss_pred EEeCCCCchhhhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccc
Q 016377 81 WLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVV 130 (390)
Q Consensus 81 l~~g~PCq~fS~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~ 130 (390)
++.- .++. .+.++++.+..+.++=-++++-||-
T Consensus 136 iFID----------------adK~-~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 136 VFID----------------ADKA-DYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred EEEe----------------CChh-hCHHHHHHHHHHhCCCcEEEEeecc
Confidence 8732 1122 2444443333321245899999993
No 254
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.08 E-value=1.3e+02 Score=26.47 Aligned_cols=54 Identities=24% Similarity=0.150 Sum_probs=40.7
Q ss_pred CceEEeeecCch-hHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC--CCeecCcccc
Q 016377 12 AWRVLEFYSGIG-GMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH--RPYQGNIQNL 68 (390)
Q Consensus 12 ~~~~~dlF~G~G-g~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~--~~~~~di~~~ 68 (390)
.+.+-.-|+|+| +.-+.+..+|.. |.|+--.+.-...+-+-.|. .+++.|+...
T Consensus 9 ~vlvTgagaGIG~~~v~~La~aGA~---ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~w 65 (245)
T KOG1207|consen 9 IVLVTGAGAGIGKEIVLSLAKAGAQ---VIAVARNEANLLSLVKETPSLIIPIVGDLSAW 65 (245)
T ss_pred EEEeecccccccHHHHHHHHhcCCE---EEEEecCHHHHHHHHhhCCcceeeeEecccHH
Confidence 344556788888 788889999975 77778888878887777776 4578888764
No 255
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=27.64 E-value=1.4e+02 Score=26.50 Aligned_cols=59 Identities=24% Similarity=0.398 Sum_probs=35.6
Q ss_pred eecCchhHHHH----HHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCch
Q 016377 18 FYSGIGGMRYS----LMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQP 89 (390)
Q Consensus 18 lF~G~Gg~~~g----~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~ 89 (390)
++-|.|.+... |.+.|.+ ++ ++|.++.+++.+...+....+ | .+++...+.|+++ ||-.
T Consensus 32 ~I~G~G~vG~~~A~~L~~~G~~--Vv-v~D~~~~~~~~~~~~~g~~~v--~-----~~~l~~~~~Dv~v---p~A~ 94 (200)
T cd01075 32 AVQGLGKVGYKLAEHLLEEGAK--LI-VADINEEAVARAAELFGATVV--A-----PEEIYSVDADVFA---PCAL 94 (200)
T ss_pred EEECCCHHHHHHHHHHHHCCCE--EE-EEcCCHHHHHHHHHHcCCEEE--c-----chhhccccCCEEE---eccc
Confidence 45666654433 4457865 55 889999999888877642211 2 2223322589987 6643
No 256
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=27.32 E-value=3e+02 Score=21.36 Aligned_cols=64 Identities=13% Similarity=0.085 Sum_probs=41.7
Q ss_pred eecCchhHHHHHHh---cCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccch---hhhcccCccEEEeCCC
Q 016377 18 FYSGIGGMRYSLMK---ADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTA---AELDMYGAHAWLLSPP 86 (390)
Q Consensus 18 lF~G~Gg~~~g~~~---aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~---~~~~~~~~D~l~~g~P 86 (390)
+.+|.|-+...+.+ .+- ..+..+|.|+..++..+... -.++.+|..+... ..+. +.|.++...+
T Consensus 2 vI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~--~a~~vv~~~~ 71 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGG--IDVVVIDRDPERVEELREEG-VEVIYGDATDPEVLERAGIE--KADAVVILTD 71 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGG--CESEEEEESS
T ss_pred EEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHHHHHHHhcc-cccccccchhhhHHhhcCcc--ccCEEEEccC
Confidence 46788866655543 132 26889999999999888766 4567788887643 2333 4887776655
No 257
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=26.63 E-value=1.3e+02 Score=26.98 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=27.6
Q ss_pred CceEEeeecCchhHHH-HHHhcCCCccEEEEEcccHHHHHHHHHh
Q 016377 12 AWRVLEFYSGIGGMRY-SLMKADVSAQVVEAFDINDKANDVYELN 55 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~-g~~~aG~~~~~v~a~e~~~~a~~~~~~n 55 (390)
.=.++||=||.|-.-+ +....|++ ..+++|+.+...+.-..+
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~--~~~GIEi~~~~~~~a~~~ 85 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCK--KSVGIEILPELHDLAEEL 85 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--S--EEEEEE-SHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCc--EEEEEEechHHHHHHHHH
Confidence 3479999999997654 44456866 899999999887654443
No 258
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=25.54 E-value=78 Score=29.40 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=12.5
Q ss_pred CCceEEeeecCchhH
Q 016377 11 EAWRVLEFYSGIGGM 25 (390)
Q Consensus 11 ~~~~~~dlF~G~Gg~ 25 (390)
..+++|+|=||+|-.
T Consensus 86 ~~~~vlELGsGtglv 100 (248)
T KOG2793|consen 86 KYINVLELGSGTGLV 100 (248)
T ss_pred cceeEEEecCCccHH
Confidence 567899999999933
No 259
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=25.37 E-value=1.8e+02 Score=26.25 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=61.7
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC--CCeecCccccchhhhcccCccEEEeCCCCchh
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH--RPYQGNIQNLTAAELDMYGAHAWLLSPPCQPY 90 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~--~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~f 90 (390)
-+|+|+=+|.|.++.++..+=-+.+ +...|. +..++.-+. .+ ..+.+|+. +.++. .|+++.+-=+-.|
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~~P~l~-~~v~Dl-p~v~~~~~~--~~rv~~~~gd~f----~~~P~--~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARAYPNLR-ATVFDL-PEVIEQAKE--ADRVEFVPGDFF----DPLPV--ADVYLLRHVLHDW 171 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTSE-EEEEE--HHHHCCHHH--TTTEEEEES-TT----TCCSS--ESEEEEESSGGGS
T ss_pred cEEEeccCcchHHHHHHHHHCCCCc-ceeecc-Hhhhhcccc--ccccccccccHH----hhhcc--ccceeeehhhhhc
Confidence 3799999999999999988643343 455777 444444444 33 34677877 25665 8999987666666
Q ss_pred hhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEecccc
Q 016377 91 TRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVG 131 (390)
Q Consensus 91 S~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~ 131 (390)
+ +++.-.++..+.+.+.-= ..-+++|+|.|..
T Consensus 172 ~--------d~~~~~iL~~~~~al~pg-~~g~llI~e~~~~ 203 (241)
T PF00891_consen 172 S--------DEDCVKILRNAAAALKPG-KDGRLLIIEMVLP 203 (241)
T ss_dssp ---------HHHHHHHHHHHHHHSEEC-TTEEEEEEEEEEC
T ss_pred c--------hHHHHHHHHHHHHHhCCC-CCCeEEEEeeccC
Confidence 5 233345566666655520 0268999999943
No 260
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=24.78 E-value=2.3e+02 Score=26.98 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=35.1
Q ss_pred ecCchhHHHH----HHhcCCCccEEEEEccc-----------------------HHHHHHHHHhcCCC---CeecCcccc
Q 016377 19 YSGIGGMRYS----LMKADVSAQVVEAFDIN-----------------------DKANDVYELNFGHR---PYQGNIQNL 68 (390)
Q Consensus 19 F~G~Gg~~~g----~~~aG~~~~~v~a~e~~-----------------------~~a~~~~~~n~~~~---~~~~di~~~ 68 (390)
-.|+||+.-- |..+|+. -+.-+|.| +-|++..+...|+. .+..+|.+.
T Consensus 4 VVGaGGlG~eilknLal~Gvg--~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~~ 81 (291)
T cd01488 4 VIGAGGLGCELLKNLALSGFR--NIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQDK 81 (291)
T ss_pred EECCCHHHHHHHHHHHHcCCC--eEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCch
Confidence 4577765443 3347976 77777766 33344444555552 244566655
Q ss_pred chhhhcccCccEEEeC
Q 016377 69 TAAELDMYGAHAWLLS 84 (390)
Q Consensus 69 ~~~~~~~~~~D~l~~g 84 (390)
+.+-+. ++|+++.+
T Consensus 82 ~~~f~~--~fdvVi~a 95 (291)
T cd01488 82 DEEFYR--QFNIIICG 95 (291)
T ss_pred hHHHhc--CCCEEEEC
Confidence 443344 38888754
No 261
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=24.46 E-value=1.5e+02 Score=24.32 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=28.4
Q ss_pred CCCCceEEeeecCch--hHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCC
Q 016377 9 DGEAWRVLEFYSGIG--GMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 9 ~~~~~~~~dlF~G~G--g~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
+..++++-=+=+|-= .+...|.++|+. ++...-.+..+.+-.....+...+ .+.. ++.. +.|+++..-|
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~--v~~v~srs~~sa~~a~~~~~~~~~-~~~~-----~~~~-~aDlv~iavp 77 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHE--VVGVYSRSPASAERAAAFIGAGAI-LDLE-----EILR-DADLVFIAVP 77 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSE--EEEESSCHH-HHHHHHC--TT------TT-----GGGC-C-SEEEE-S-
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCe--EEEEEeCCcccccccccccccccc-cccc-----cccc-cCCEEEEEec
Confidence 444455543333322 456667889975 443334444455555544554322 1222 3333 4999998877
No 262
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=24.34 E-value=1.5e+02 Score=28.50 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=46.4
Q ss_pred ceEEeeecCchhHHHHHHhc-CCCccEEEEEcccHHHHHHHHHhcC---C--CCeecCccccchh--hhcccCccEEEeC
Q 016377 13 WRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFG---H--RPYQGNIQNLTAA--ELDMYGAHAWLLS 84 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~a-G~~~~~v~a~e~~~~a~~~~~~n~~---~--~~~~~di~~~~~~--~~~~~~~D~l~~g 84 (390)
-.++|.=.|.||=|..+-.+ +-- .|+|+|.|+.|++.-+.+.. + .++.++-.++... ...-..+|.+.+-
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~g--~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGTG--RLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDGILVD 99 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCCC--EEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccEEEEe
Confidence 36999999999999999875 322 69999999999988776543 2 2345555554321 1110137777664
No 263
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=24.17 E-value=1e+02 Score=28.36 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=38.5
Q ss_pred CCCCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHH-------HHHHHHhcCC--------CCeecCccccchhh
Q 016377 8 NDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKA-------NDVYELNFGH--------RPYQGNIQNLTAAE 72 (390)
Q Consensus 8 ~~~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a-------~~~~~~n~~~--------~~~~~di~~~~~~~ 72 (390)
...+..+|+|.=+|.|.=++=+...|.+ |.++|-++.- .+.|...-.. .++.+|-.++-.
T Consensus 72 k~~~~~~VLDaTaGLG~Da~vlA~~G~~---V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-- 146 (234)
T PF04445_consen 72 KPGMRPSVLDATAGLGRDAFVLASLGCK---VTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-- 146 (234)
T ss_dssp BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC--
T ss_pred CCCCCCEEEECCCcchHHHHHHHccCCe---EEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh--
Confidence 3445569999999999988888888975 8899988654 3444332111 235666666443
Q ss_pred hcccCccEEEeCC
Q 016377 73 LDMYGAHAWLLSP 85 (390)
Q Consensus 73 ~~~~~~D~l~~g~ 85 (390)
.+...+||+-.-|
T Consensus 147 ~~~~s~DVVY~DP 159 (234)
T PF04445_consen 147 QPDNSFDVVYFDP 159 (234)
T ss_dssp CHSS--SEEEE--
T ss_pred hcCCCCCEEEECC
Confidence 2222589988764
No 264
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=24.03 E-value=3.5e+02 Score=21.03 Aligned_cols=105 Identities=13% Similarity=0.215 Sum_probs=61.8
Q ss_pred ecCchhHHHHH----HhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCchhhhcc
Q 016377 19 YSGIGGMRYSL----MKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQPYTRQG 94 (390)
Q Consensus 19 F~G~Gg~~~g~----~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~fS~~g 94 (390)
+-|+|.+.... ....-.++++..+|.++...+.+...++.. ...|+.++-.+ .++|+++.+.|-
T Consensus 5 iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~~~~~~ll~~----~~~D~V~I~tp~------- 72 (120)
T PF01408_consen 5 IIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP-VYTDLEELLAD----EDVDAVIIATPP------- 72 (120)
T ss_dssp EESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE-EESSHHHHHHH----TTESEEEEESSG-------
T ss_pred EECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc-chhHHHHHHHh----hcCCEEEEecCC-------
Confidence 45776554333 333233569999999999999887777655 55676665432 248888777662
Q ss_pred CCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCC
Q 016377 95 LQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSD 149 (390)
Q Consensus 95 ~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~G 149 (390)
+.+ +..+..+++. -+.+++|==.. .+....+.+++..++.|
T Consensus 73 ------~~h---~~~~~~~l~~----g~~v~~EKP~~-~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 73 ------SSH---AEIAKKALEA----GKHVLVEKPLA-LTLEEAEELVEAAKEKG 113 (120)
T ss_dssp ------GGH---HHHHHHHHHT----TSEEEEESSSS-SSHHHHHHHHHHHHHHT
T ss_pred ------cch---HHHHHHHHHc----CCEEEEEcCCc-CCHHHHHHHHHHHHHhC
Confidence 112 2223333333 44677774332 35455666766666544
No 265
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=23.67 E-value=2.3e+02 Score=23.83 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=39.0
Q ss_pred EEeeecCchhHHHHHH--hcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCcc-----ccc--hh-hhcccCccEEEeC
Q 016377 15 VLEFYSGIGGMRYSLM--KADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQ-----NLT--AA-ELDMYGAHAWLLS 84 (390)
Q Consensus 15 ~~dlF~G~Gg~~~g~~--~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~-----~~~--~~-~~~~~~~D~l~~g 84 (390)
|.-+=||.+|..++.. ..|. -|.-...+++.++..+.++.+..+..++. .++ .+ .+. +.|+++..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~---~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~--~ad~Iiia 76 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGH---EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE--DADIIIIA 76 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTE---EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT--T-SEEEE-
T ss_pred EEEECcCHHHHHHHHHHHHcCC---EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC--cccEEEec
Confidence 3344455555555544 3474 47777888888888888876432221110 111 11 233 49999999
Q ss_pred CCCchhh
Q 016377 85 PPCQPYT 91 (390)
Q Consensus 85 ~PCq~fS 91 (390)
-|+|.+.
T Consensus 77 vPs~~~~ 83 (157)
T PF01210_consen 77 VPSQAHR 83 (157)
T ss_dssp S-GGGHH
T ss_pred ccHHHHH
Confidence 9976654
No 266
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=23.38 E-value=88 Score=25.85 Aligned_cols=57 Identities=25% Similarity=0.229 Sum_probs=30.8
Q ss_pred eEEeeecCch---hHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccchhhhcccCccEEE
Q 016377 14 RVLEFYSGIG---GMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWL 82 (390)
Q Consensus 14 ~~~dlF~G~G---g~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~ 82 (390)
+++++ |+| -....|++.|++ |.++|+++.. ...+-..+..||.+-+.+-..+ +|+|-
T Consensus 16 kiVEV--GiG~~~~vA~~L~~~G~d---V~~tDi~~~~-----a~~g~~~v~DDif~P~l~iY~~--a~lIY 75 (127)
T PF03686_consen 16 KIVEV--GIGFNPEVAKKLKERGFD---VIATDINPRK-----APEGVNFVVDDIFNPNLEIYEG--ADLIY 75 (127)
T ss_dssp EEEEE--T-TT--HHHHHHHHHS-E---EEEE-SS-S---------STTEE---SSS--HHHHTT--EEEEE
T ss_pred cEEEE--CcCCCHHHHHHHHHcCCc---EEEEECcccc-----cccCcceeeecccCCCHHHhcC--CcEEE
Confidence 77776 666 567778889986 8999999882 2223356778888765543333 66654
No 267
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=23.30 E-value=2.5e+02 Score=24.87 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=15.9
Q ss_pred ecCchhHH----HHHHhcCCCccEEEEEccc
Q 016377 19 YSGIGGMR----YSLMKADVSAQVVEAFDIN 45 (390)
Q Consensus 19 F~G~Gg~~----~g~~~aG~~~~~v~a~e~~ 45 (390)
..|+||+. .-|..+|+. .+..+|.|
T Consensus 26 viG~GglGs~ia~~La~~Gv~--~i~lvD~d 54 (202)
T TIGR02356 26 IIGAGGLGSPAALYLAGAGVG--TIVIVDDD 54 (202)
T ss_pred EECCCHHHHHHHHHHHHcCCC--eEEEecCC
Confidence 44666533 344567976 77788877
No 268
>PLN02477 glutamate dehydrogenase
Probab=22.69 E-value=1.8e+02 Score=29.24 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=37.2
Q ss_pred CchhHHHHH----HhcCCCccEEEEEccc----------HHHHHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCC
Q 016377 21 GIGGMRYSL----MKADVSAQVVEAFDIN----------DKANDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPP 86 (390)
Q Consensus 21 G~Gg~~~g~----~~aG~~~~~v~a~e~~----------~~a~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~P 86 (390)
|.|....++ .+.|.+ +|..+|.+ ..++..|+.......-......++.+++-..+.||++ |
T Consensus 213 GfGnVG~~~A~~L~e~Gak--VVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~Dvli---P 287 (410)
T PLN02477 213 GFGNVGSWAAQLIHEKGGK--IVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLI---P 287 (410)
T ss_pred CCCHHHHHHHHHHHHcCCE--EEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceeccccEEe---e
Confidence 777555544 456865 88888987 7777666665432111112233444444444789998 8
Q ss_pred Cc
Q 016377 87 CQ 88 (390)
Q Consensus 87 Cq 88 (390)
|-
T Consensus 288 ~A 289 (410)
T PLN02477 288 AA 289 (410)
T ss_pred cc
Confidence 83
No 269
>PRK08223 hypothetical protein; Validated
Probab=22.66 E-value=2.4e+02 Score=26.80 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=17.7
Q ss_pred eecCchhH----HHHHHhcCCCccEEEEEcccH
Q 016377 18 FYSGIGGM----RYSLMKADVSAQVVEAFDIND 46 (390)
Q Consensus 18 lF~G~Gg~----~~g~~~aG~~~~~v~a~e~~~ 46 (390)
|..|+||+ ..-|..+|+. .+.-+|.|.
T Consensus 31 lIvG~GGLGs~va~~LA~aGVG--~i~lvD~D~ 61 (287)
T PRK08223 31 AIAGLGGVGGIHLLTLARLGIG--KFTIADFDV 61 (287)
T ss_pred EEECCCHHHHHHHHHHHHhCCC--eEEEEeCCC
Confidence 44577763 3445568976 788888773
No 270
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=22.58 E-value=1.3e+02 Score=25.24 Aligned_cols=55 Identities=22% Similarity=0.214 Sum_probs=36.7
Q ss_pred HHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCCCCeecCccccch--hhhcccCccEEEe
Q 016377 25 MRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQGNIQNLTA--AELDMYGAHAWLL 83 (390)
Q Consensus 25 ~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~~~~~~di~~~~~--~~~~~~~~D~l~~ 83 (390)
++..|++.|++ ++.| -++.|++..+---|+..+.+.+.+++. .++.+.++|++++
T Consensus 19 l~~~Lk~~G~~--v~Va--~npAA~kLl~vaDPe~~Y~~~~~diD~~l~~i~e~~~d~~~~ 75 (139)
T PF09001_consen 19 LSYKLKKKGFE--VVVA--GNPAALKLLEVADPEKHYLKEVVDIDKCLAEIEEGDFDLIFG 75 (139)
T ss_dssp HHHHHHCTTEE--EEEE--E-HHHHHHHHHHSTT-SS-SEEEEHHHHHHH--TTS-SEEEE
T ss_pred HHHHHHhcCCe--EEEe--cCHHHHhHhhhcCCccchhcceeeHHHHHHHhhhCCCCEEEE
Confidence 45678889976 6666 378999999999999888777766654 2444446898884
No 271
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=22.26 E-value=1.4e+02 Score=30.14 Aligned_cols=61 Identities=31% Similarity=0.486 Sum_probs=33.0
Q ss_pred eecCchhHHHH-----HHhcCCCccEEEEEcccHHH-HHHHHHhcCCCCeecCccccchhhhcccCccEEEeCCCCc
Q 016377 18 FYSGIGGMRYS-----LMKADVSAQVVEAFDINDKA-NDVYELNFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQ 88 (390)
Q Consensus 18 lF~G~Gg~~~g-----~~~aG~~~~~v~a~e~~~~a-~~~~~~n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq 88 (390)
.|.|+||..++ |...|.+ |.++|..+.. .+.++. .+-.++.+ .+.+.+. ++|+++.||-..
T Consensus 3 ~~iGiggsGm~~la~~L~~~G~~---v~~~D~~~~~~~~~l~~-~gi~~~~g----~~~~~~~--~~d~vV~spgi~ 69 (448)
T TIGR01082 3 HFVGIGGIGMSGIAEILLNRGYQ---VSGSDIAENATTKRLEA-LGIPIYIG----HSAENLD--DADVVVVSAAIK 69 (448)
T ss_pred EEEEECHHHHHHHHHHHHHCCCe---EEEECCCcchHHHHHHH-CcCEEeCC----CCHHHCC--CCCEEEECCCCC
Confidence 57888887776 3457875 6778865532 111211 11112211 2233444 389999987543
No 272
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=22.15 E-value=89 Score=28.79 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=34.8
Q ss_pred ecCchhH----HHHHHhcCCCccEEEEEccc---HHHHHHHHHhcCCC---CeecCccccchhhhcc---------cCcc
Q 016377 19 YSGIGGM----RYSLMKADVSAQVVEAFDIN---DKANDVYELNFGHR---PYQGNIQNLTAAELDM---------YGAH 79 (390)
Q Consensus 19 F~G~Gg~----~~g~~~aG~~~~~v~a~e~~---~~a~~~~~~n~~~~---~~~~di~~~~~~~~~~---------~~~D 79 (390)
-+|+||. +..|...|.+ +.+++.. +.|..-+++-+|.. .++.|+.+. .++.. ..+|
T Consensus 11 tggagGIGl~~sk~Ll~kgik---~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~--~~~~~~f~ki~~~fg~iD 85 (261)
T KOG4169|consen 11 TGGAGGIGLATSKALLEKGIK---VLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNR--GDLEAAFDKILATFGTID 85 (261)
T ss_pred ecCCchhhHHHHHHHHHcCch---heeehhhhhCHHHHHHHhccCCCceEEEEEeccccH--HHHHHHHHHHHHHhCceE
Confidence 3455554 4555566876 3344443 55566666666652 467888873 22221 1699
Q ss_pred EEEeC
Q 016377 80 AWLLS 84 (390)
Q Consensus 80 ~l~~g 84 (390)
+++-|
T Consensus 86 IlINg 90 (261)
T KOG4169|consen 86 ILING 90 (261)
T ss_pred EEEcc
Confidence 99954
No 273
>PRK10904 DNA adenine methylase; Provisional
Probab=21.99 E-value=52 Score=30.92 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=30.9
Q ss_pred ceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhc
Q 016377 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF 56 (390)
Q Consensus 13 ~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~ 56 (390)
-+.+|-|+|+|+..+.+.. + .++.+|+|++=+..|+.--
T Consensus 29 ~~yvEPF~GggaV~l~~~~---~--~~ilND~n~~Lin~y~~i~ 67 (271)
T PRK10904 29 ECLIEPFVGAGSVFLNTDF---S--RYILADINSDLISLYNIVK 67 (271)
T ss_pred CcEEeccCCcceeeEecCC---C--eEEEEeCCHHHHHHHHHHH
Confidence 3799999999999887532 3 5677999999999887543
No 274
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.76 E-value=2.3e+02 Score=25.56 Aligned_cols=45 Identities=20% Similarity=0.097 Sum_probs=36.3
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~ 57 (390)
+..-+|||.=+|+|=.+.-+.+..- .|+++|+++.=++.-++|+-
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~ 115 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLE 115 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHH
Confidence 4457899999999988888888653 59999999997777777753
No 275
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=21.45 E-value=1.9e+02 Score=26.26 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=37.5
Q ss_pred HHhcCCCccEEEEEcccHHHHHHHHH-hcCCCCeecCccccch---hhhcccCccEEEeCC
Q 016377 29 LMKADVSAQVVEAFDINDKANDVYEL-NFGHRPYQGNIQNLTA---AELDMYGAHAWLLSP 85 (390)
Q Consensus 29 ~~~aG~~~~~v~a~e~~~~a~~~~~~-n~~~~~~~~di~~~~~---~~~~~~~~D~l~~g~ 85 (390)
|.+.|.+ |.++|.|+..++.+.. .+....+++|..+.+. ..+. ++|++++..
T Consensus 19 L~~~g~~---Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~--~aD~vva~t 74 (225)
T COG0569 19 LSEEGHN---VVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID--DADAVVAAT 74 (225)
T ss_pred HHhCCCc---eEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC--cCCEEEEee
Confidence 4456775 8899999999999777 4666778888887653 1233 589998763
No 276
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.34 E-value=2.1e+02 Score=26.02 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=38.4
Q ss_pred CCCceEEeeecCchhHHHHHHh-cCCCccEEEEEcccHHHHHHHHHhcC
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMK-ADVSAQVVEAFDINDKANDVYELNFG 57 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~-aG~~~~~v~a~e~~~~a~~~~~~n~~ 57 (390)
....++||+=+|.|=++..|.. -|-.+..+.++|+-++-.+.-++|.-
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~ 129 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLD 129 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHH
Confidence 3567899999999999988873 45444456899999999999888875
No 277
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=21.12 E-value=2.1e+02 Score=27.13 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=46.8
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcC-----C--CCeecCccccchhhhcccCccEEEeC
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG-----H--RPYQGNIQNLTAAELDMYGAHAWLLS 84 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~-----~--~~~~~di~~~~~~~~~~~~~D~l~~g 84 (390)
.=+|++-=.|.|++|.++.++=-.-=.++.+|+.+.-++.-..-|. + .++..||..-... +.+..+|.++.-
T Consensus 106 GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~-~ks~~aDaVFLD 184 (314)
T KOG2915|consen 106 GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL-IKSLKADAVFLD 184 (314)
T ss_pred CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc-ccccccceEEEc
Confidence 3468999999999999999862111168889987665554444443 2 2355677654321 223357888877
Q ss_pred CC
Q 016377 85 PP 86 (390)
Q Consensus 85 ~P 86 (390)
.|
T Consensus 185 lP 186 (314)
T KOG2915|consen 185 LP 186 (314)
T ss_pred CC
Confidence 66
No 278
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=21.03 E-value=1.5e+02 Score=26.68 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=32.2
Q ss_pred hHHHHHHhcCCCccEEEEEcccHHHHHHHHHhcCC----CCeecCccccc
Q 016377 24 GMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH----RPYQGNIQNLT 69 (390)
Q Consensus 24 g~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~n~~~----~~~~~di~~~~ 69 (390)
..+.-|...|.. +..+|.|..+++.-..+.++ ..+.+|+.+-.
T Consensus 29 Aia~~la~~Gar---v~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~ 75 (256)
T KOG1200|consen 29 AIAQLLAKKGAR---VAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAH 75 (256)
T ss_pred HHHHHHHhcCcE---EEEeecchhhHHHHHhhcCCCCccceeeeccCcHH
Confidence 445556667875 77889999999998999876 34778887754
No 279
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=20.44 E-value=2.1e+02 Score=27.60 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=33.5
Q ss_pred CCCceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHH
Q 016377 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVY 52 (390)
Q Consensus 10 ~~~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~ 52 (390)
-..-+|+|+=||.|-.+.-+..+|-+ .|.++|-+....--+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF 154 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQF 154 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHH
Confidence 34568999999999999999999966 999999887654443
No 280
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=20.34 E-value=4.6e+02 Score=24.21 Aligned_cols=154 Identities=6% Similarity=-0.069 Sum_probs=83.0
Q ss_pred CceEEeeecCchhHHHHHHhcCCCccEEEEEcccHHHHHHHHH-hcCCCCeecCccccchhhhcccCccEEEeCCCCchh
Q 016377 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYEL-NFGHRPYQGNIQNLTAAELDMYGAHAWLLSPPCQPY 90 (390)
Q Consensus 12 ~~~~~dlF~G~Gg~~~g~~~aG~~~~~v~a~e~~~~a~~~~~~-n~~~~~~~~di~~~~~~~~~~~~~D~l~~g~PCq~f 90 (390)
.=-+||+=||.|-...-+.+.|. +..++|+++.-.++-.. ...+..+.+|..+=- .++.+-+|-.+-=.--|-.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~Gl--pfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGL--PFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCC--CCCCCccceEEEeeeeeee
Confidence 34589999999999999999994 68899999887776553 333456667776421 2333345543322222333
Q ss_pred hhccCCCCCCChhhhhHHHHHHhcccccCCCcEEEEeccccccChHHHHHHHHHHHhCCceeEEEEeCCCCcCCCccCcE
Q 016377 91 TRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPR 170 (390)
Q Consensus 91 S~~g~~~~~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~a~~~G~pq~R~R 170 (390)
=+|.+ ..+.++..|..-|-.+...+++.-+. +|.=-|. +....+.|.++-...|+.=-..|-+. -..+++.
T Consensus 126 cnA~~--s~~~P~~Rl~~FF~tLy~~l~rg~ra-V~QfYpe--n~~q~d~i~~~a~~aGF~GGlvVd~P----es~k~kK 196 (270)
T KOG1541|consen 126 CNADK--SLHVPKKRLLRFFGTLYSCLKRGARA-VLQFYPE--NEAQIDMIMQQAMKAGFGGGLVVDWP----ESTKNKK 196 (270)
T ss_pred cccCc--cccChHHHHHHHhhhhhhhhccCcee-EEEeccc--chHHHHHHHHHHHhhccCCceeeecc----cccccce
Confidence 33433 23455443333222232233111222 2211111 12346777777777776544333222 2356777
Q ss_pred EEEEEEeCC
Q 016377 171 YFCLAKRKP 179 (390)
Q Consensus 171 ~~~i~~~~~ 179 (390)
+|+|-...+
T Consensus 197 ~yLVL~~g~ 205 (270)
T KOG1541|consen 197 YYLVLMTGG 205 (270)
T ss_pred eEEEEecCC
Confidence 777765543
No 281
>PTZ00357 methyltransferase; Provisional
Probab=20.26 E-value=2.4e+02 Score=30.49 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=34.1
Q ss_pred ceEEeeecCchhH-H---HHHHhcCCCccEEEEEcccHHHH-HHHHH--h---cC-------C--CCeecCccccch
Q 016377 13 WRVLEFYSGIGGM-R---YSLMKADVSAQVVEAFDINDKAN-DVYEL--N---FG-------H--RPYQGNIQNLTA 70 (390)
Q Consensus 13 ~~~~dlF~G~Gg~-~---~g~~~aG~~~~~v~a~e~~~~a~-~~~~~--n---~~-------~--~~~~~di~~~~~ 70 (390)
+.|+-+=||=|.+ + .+++.+|.++ .|+|+|.++.|+ -++.. | +. + .+|..|++++..
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkV-rIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~ 777 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRL-RIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIAT 777 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcE-EEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccc
Confidence 4555555665543 2 3444568753 499999996544 44443 2 21 1 457889999864
No 282
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=20.14 E-value=1.6e+02 Score=20.08 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=26.4
Q ss_pred EEEeccccccChHHHHHHHHHHHhCCceeEEEEeCCCC
Q 016377 124 LFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQ 161 (390)
Q Consensus 124 ~~~ENV~~~~~~~~~~~~~~~l~~~GY~~~~~~l~a~~ 161 (390)
+.++|.||+ +.++.+.|.+.|+++.........
T Consensus 5 v~~~drpG~-----l~~v~~~la~~~inI~~~~~~~~~ 37 (66)
T PF01842_consen 5 VIVPDRPGI-----LADVTEILADHGINIDSISQSSDK 37 (66)
T ss_dssp EEEETSTTH-----HHHHHHHHHHTTEEEEEEEEEEES
T ss_pred EEcCCCCCH-----HHHHHHHHHHcCCCHHHeEEEecC
Confidence 578899887 888999999999998776555443
Done!