BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016378
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna
Binding Domain From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr3023c
Length = 125
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 11/108 (10%)
Query: 8 GSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFI 67
G ++V FL K + +V D TD++I W S SF ++D +F+ ++LP+YFKH+N +SF+
Sbjct: 13 GPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFV 72
Query: 68 RQLNIYGFRKI-----------DTDRWEFANDGFVRDQKHLLNNICRR 104
RQLN+YGFRK+ + D EF + F+R Q+ LL NI R+
Sbjct: 73 RQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX
Length = 102
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 11/92 (11%)
Query: 8 GSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFI 67
GS + F+NK + MV+D+S + I W S ES V+ + F ++LP+YFKHSNF+SF+
Sbjct: 8 GSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFV 67
Query: 68 RQLNIYGFRKI-----------DTDRWEFAND 88
RQLN+YG+ K+ + RWEF N+
Sbjct: 68 RQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 99
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
Length = 106
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 10/105 (9%)
Query: 10 NSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQ 69
+ V FL K + +VDD T+ +I W + +SFVI + +F+ +LLP +KH+N +SFIRQ
Sbjct: 2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61
Query: 70 LNIYGFRKI----------DTDRWEFANDGFVRDQKHLLNNICRR 104
LN+YGF KI D D EF++ F R+ LL+ I R+
Sbjct: 62 LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Tail-To-Tail Orientation
pdb|1FYM|B Chain B, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Tail-To-Tail Orientation
pdb|2HTS|A Chain A, Crystal Structure Of The Dna Binding Domain Of The Heat
Shock Transcription Factor
pdb|3HSF|A Chain A, Heat Shock Transcription Factor (Hsf)
Length = 92
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 11/85 (12%)
Query: 15 FLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYG 74
F+NK + MV+D+S + I W S ES V+ + F ++LP+YFKHSNF+SF+RQLN+YG
Sbjct: 5 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYG 64
Query: 75 FRKI-----------DTDRWEFAND 88
+ K+ + RWEF N+
Sbjct: 65 WHKVQDVKSGSMLSNNDSRWEFENE 89
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
pdb|1FBU|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Length = 90
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 11/85 (12%)
Query: 15 FLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYG 74
F+NK + MV+D+S + I W S ES V+ + F ++LP+YFKHSNF+SF+RQLN+YG
Sbjct: 3 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYG 62
Query: 75 FRKI-----------DTDRWEFAND 88
+ K+ + RWEF N+
Sbjct: 63 WHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
pdb|1FBS|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
Length = 90
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 11/86 (12%)
Query: 14 PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIY 73
F+NK + MV+D+S + I W S ES V+ + F ++L +YFKHSNF+SF+RQLN+Y
Sbjct: 2 AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNMY 61
Query: 74 GFRKI-----------DTDRWEFAND 88
G+ K+ + RWEF N+
Sbjct: 62 GWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
pdb|1FBQ|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
Length = 90
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 11/86 (12%)
Query: 14 PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIY 73
F+NK + MV+D+S + I W S ES V+ + F ++L +YFKHSNF+SF+RQLN+Y
Sbjct: 2 AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNMY 61
Query: 74 GFRKI-----------DTDRWEFAND 88
G+ K+ + RWEF N+
Sbjct: 62 GWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna That Is Translationally Disordered
pdb|1FYL|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Head-To-Head Orientation
pdb|1FYL|B Chain B, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Head-To-Head Orientation
Length = 92
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 11/85 (12%)
Query: 15 FLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYG 74
F+NK + V+D+S + I W S ES V+ + F ++LP+YFKHSNF+SF+RQLN YG
Sbjct: 5 FVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNXYG 64
Query: 75 FRKI-----------DTDRWEFAND 88
+ K+ + RWEF N+
Sbjct: 65 WHKVQDVKSGSXLSNNDSRWEFENE 89
>pdb|2FRD|A Chain A, Structure Of Transhydrogenase
(di.s138a.nadh)2(diii.nadph)1 Asymmetric Complex
pdb|2FRD|B Chain B, Structure Of Transhydrogenase
(di.s138a.nadh)2(diii.nadph)1 Asymmetric Complex
Length = 384
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 39 ESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFAN 87
E+ +T ++++L+PR + + Q N+ G+R + +EFA
Sbjct: 110 EALTKRKITAYAMELMPRISRAQSMDILASQSNLAGYRAVIDGAYEFAR 158
>pdb|2FSV|A Chain A, Structure Of Transhydrogenase
(Di.D135n.Nad+)2(Diii.E155w.Nadp+)1 Asymmetric Complex
pdb|2FSV|B Chain B, Structure Of Transhydrogenase
(Di.D135n.Nad+)2(Diii.E155w.Nadp+)1 Asymmetric Complex
Length = 384
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 39 ESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFAN 87
E+ +T ++++L+PR + + + Q N+ G+R + +EFA
Sbjct: 110 EALTKRKITAYAMELMPRISRAQSMNILSSQSNLAGYRAVIDGAYEFAR 158
>pdb|1NM5|A Chain A, R. Rubrum Transhydrogenase (Di.Q132n)2(Diii)1 Asymmetric
Complex
pdb|1NM5|B Chain B, R. Rubrum Transhydrogenase (Di.Q132n)2(Diii)1 Asymmetric
Complex
Length = 384
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 39 ESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFAN 87
E+ +T ++++L+PR + ++ Q N+ G+R + +EFA
Sbjct: 110 EALTKRKITAYAMELMPRISRANSMDILSSQSNLAGYRAVIDGAYEFAR 158
>pdb|1HZZ|A Chain A, The Asymmetric Complex Of The Two Nucleotide-Binding
Components (Di, Diii) Of Proton-Translocating
Transhydrogenase
pdb|1HZZ|B Chain B, The Asymmetric Complex Of The Two Nucleotide-Binding
Components (Di, Diii) Of Proton-Translocating
Transhydrogenase
pdb|1L7D|A Chain A, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
Without Bound Nad(H)
pdb|1L7D|C Chain C, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
Without Bound Nad(H)
pdb|1L7D|D Chain D, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
Without Bound Nad(H)
pdb|1L7E|A Chain A, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
With Bound Nadh
pdb|1L7E|B Chain B, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
With Bound Nadh
pdb|1L7E|C Chain C, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
With Bound Nadh
pdb|1L7E|D Chain D, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
With Bound Nadh
pdb|1U28|A Chain A, R. Rubrum Transhydrogenase Asymmetric Complex
(Di.Nad+)2(Diii.Nadp+)1
pdb|1U28|B Chain B, R. Rubrum Transhydrogenase Asymmetric Complex
(Di.Nad+)2(Diii.Nadp+)1
pdb|1U2D|A Chain A, Structre Of Transhydrogenaes (Di.Nadh)2(Diii.Nadph)1
Asymmetric Complex
pdb|1U2D|B Chain B, Structre Of Transhydrogenaes (Di.Nadh)2(Diii.Nadph)1
Asymmetric Complex
pdb|1U2G|A Chain A, Transhydrogenase (Di.Adpr)2(Diii.Nadph)1 Asymmetric
Complex
pdb|1U2G|B Chain B, Transhydrogenase (Di.Adpr)2(Diii.Nadph)1 Asymmetric
Complex
pdb|1XLT|A Chain A, Crystal Structure Of Transhydrogenase [(Domain I)2:domain
Iii] Heterotrimer Complex
pdb|1XLT|B Chain B, Crystal Structure Of Transhydrogenase [(Domain I)2:domain
Iii] Heterotrimer Complex
pdb|1XLT|D Chain D, Crystal Structure Of Transhydrogenase [(Domain I)2:domain
Iii] Heterotrimer Complex
pdb|1XLT|E Chain E, Crystal Structure Of Transhydrogenase [(Domain I)2:domain
Iii] Heterotrimer Complex
pdb|1XLT|G Chain G, Crystal Structure Of Transhydrogenase [(Domain I)2:domain
Iii] Heterotrimer Complex
pdb|1XLT|H Chain H, Crystal Structure Of Transhydrogenase [(Domain I)2:domain
Iii] Heterotrimer Complex
pdb|2OO5|A Chain A, Structure Of Transhydrogenase (Di.H2nadh)2(Diii.Nadp+)1
Asymmetric Complex
pdb|2OO5|B Chain B, Structure Of Transhydrogenase (Di.H2nadh)2(Diii.Nadp+)1
Asymmetric Complex
pdb|2OOR|A Chain A, Structure Of Transhydrogenase (Di.Nad+)2(Diii.H2nadph)1
Asymmetric Complex
pdb|2OOR|B Chain B, Structure Of Transhydrogenase (Di.Nad+)2(Diii.H2nadph)1
Asymmetric Complex
Length = 384
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 39 ESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFAN 87
E+ +T ++++L+PR + + Q N+ G+R + +EFA
Sbjct: 110 EALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFAR 158
>pdb|1L7D|B Chain B, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
Without Bound Nad(H)
Length = 384
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 39 ESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFAN 87
E+ +T ++++L+PR + + Q N+ G+R + +EFA
Sbjct: 110 EALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFAR 158
>pdb|1PTJ|A Chain A, Crystal Structure Analysis Of The Di And Diii Complex Of
Transhydrogenase With A Thio-Nicotinamide Nucleotide
Analogue
pdb|1PTJ|B Chain B, Crystal Structure Analysis Of The Di And Diii Complex Of
Transhydrogenase With A Thio-Nicotinamide Nucleotide
Analogue
Length = 381
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 39 ESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFAN 87
E+ +T ++++L+PR + + Q N+ G+R + +EFA
Sbjct: 110 EALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFAR 158
>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
pdb|4ILK|B Chain B, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
Length = 359
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 203 PKENNWRMAEA-----GTMLEE------VTEVGEPIASDNMLVRYHPPIDETPKPVLKPV 251
P +N W++ EA M+E VT G+P +D +LV PI T VLK V
Sbjct: 144 PAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGLTIVQVLKGV 203
Query: 252 TDSGNQMASDTSD 264
+ N + +D D
Sbjct: 204 YNVKNVIVADRID 216
>pdb|2IEW|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
From S. Cerevisiae
pdb|2IEW|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
From S. Cerevisiae
pdb|2IF8|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
In Complex With Adp And Mn2+ From S. Cerevisiae
pdb|2IF8|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
In Complex With Adp And Mn2+ From S. Cerevisiae
Length = 363
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 111 EQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLR 170
+ + SL++ E++ E +L + +K KN L L Y+E AD+ + +
Sbjct: 140 DSKASLEKRERMKRVSETTTSGSLGFRICGMKIQKNPSVLNQLSLEYYEEEADSDYIFI- 198
Query: 171 DRVQGMEKSQQQMLSFLVMAMQNP 194
+++ G ++ Q + + + NP
Sbjct: 199 NKLYGRSRTDQNVSDAIELYFNNP 222
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 157 QYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTM 216
Q+Q+ ++LL +R+ +EK Q ++F+V+ ++ + L + N R+ ++G +
Sbjct: 675 QFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFC----TDKNERVGKSGNI 730
Query: 217 LEEV---TEVGEPIASDNMLVRYHPPIDETPKPVLKPVTDSGNQMASD 261
T++ P D L H I T +P V N+ +SD
Sbjct: 731 PAGTTVDTKITHPTEFDFYLCS-HAGIQGTSRPSHYHVLWDDNRFSSD 777
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,038,785
Number of Sequences: 62578
Number of extensions: 441401
Number of successful extensions: 818
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 24
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)