Query 016378
Match_columns 390
No_of_seqs 247 out of 1013
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:19:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 1E-47 2.2E-52 373.5 13.1 224 8-242 8-236 (304)
2 PF00447 HSF_DNA-bind: HSF-typ 100.0 3.8E-35 8.1E-40 245.2 6.0 93 14-106 1-102 (103)
3 smart00415 HSF heat shock fact 100.0 6.3E-35 1.4E-39 245.8 7.0 94 11-104 1-105 (105)
4 COG5169 HSF1 Heat shock transc 100.0 3.4E-33 7.3E-38 271.6 5.6 168 10-189 8-185 (282)
5 PF00178 Ets: Ets-domain; Int 96.1 0.007 1.5E-07 50.2 4.2 68 17-85 6-80 (85)
6 smart00413 ETS erythroblast tr 93.0 0.17 3.7E-06 42.4 4.6 56 19-74 8-65 (87)
7 COG3074 Uncharacterized protei 90.6 1.8 3.9E-05 35.3 7.8 51 132-182 21-71 (79)
8 PF12325 TMF_TATA_bd: TATA ele 86.5 6 0.00013 34.9 9.1 60 128-187 29-91 (120)
9 PF06005 DUF904: Protein of un 85.2 7.3 0.00016 31.5 8.3 45 132-176 21-65 (72)
10 TIGR02449 conserved hypothetic 84.7 4.3 9.4E-05 32.4 6.6 47 132-178 17-63 (65)
11 PF03310 Cauli_DNA-bind: Cauli 84.6 2.3 5.1E-05 37.8 5.6 56 146-204 2-57 (121)
12 KOG3806 Predicted transcriptio 83.2 2.7 5.8E-05 39.6 5.6 73 13-85 69-147 (177)
13 PRK15422 septal ring assembly 82.9 9.8 0.00021 31.6 8.1 52 132-183 21-72 (79)
14 PF10473 CENP-F_leu_zip: Leuci 82.7 12 0.00026 34.0 9.4 61 130-190 53-113 (140)
15 PF11932 DUF3450: Protein of u 81.5 11 0.00025 36.2 9.5 63 130-192 50-112 (251)
16 PF04340 DUF484: Protein of un 76.4 11 0.00024 35.7 7.6 74 86-193 17-90 (225)
17 PF10168 Nup88: Nuclear pore c 75.3 12 0.00025 42.1 8.5 65 132-196 561-625 (717)
18 PF12329 TMF_DNA_bd: TATA elem 74.7 28 0.0006 28.1 8.4 58 131-188 14-71 (74)
19 TIGR02894 DNA_bind_RsfA transc 74.0 22 0.00047 33.2 8.5 53 138-190 99-151 (161)
20 PF02183 HALZ: Homeobox associ 69.1 20 0.00044 26.5 5.9 39 135-173 4-42 (45)
21 TIGR02449 conserved hypothetic 69.0 41 0.00088 26.9 8.0 47 133-179 11-57 (65)
22 PF10473 CENP-F_leu_zip: Leuci 67.9 51 0.0011 29.9 9.4 54 131-184 68-121 (140)
23 PF05377 FlaC_arch: Flagella a 66.8 45 0.00099 25.9 7.6 32 159-190 16-47 (55)
24 PF04728 LPP: Lipoprotein leuc 66.2 45 0.00098 26.1 7.5 47 132-178 6-52 (56)
25 KOG4460 Nuclear pore complex, 66.1 38 0.00082 37.4 9.5 62 135-196 587-648 (741)
26 COG1579 Zn-ribbon protein, pos 64.8 49 0.0011 32.6 9.3 56 129-184 89-144 (239)
27 PF06156 DUF972: Protein of un 64.2 32 0.0007 29.8 7.1 46 133-178 12-57 (107)
28 PF06005 DUF904: Protein of un 64.1 76 0.0017 25.7 9.5 50 135-184 17-66 (72)
29 PF02403 Seryl_tRNA_N: Seryl-t 61.3 54 0.0012 27.3 7.9 58 130-187 37-97 (108)
30 PRK13169 DNA replication intia 60.4 40 0.00088 29.4 7.1 45 132-176 11-55 (110)
31 PF10779 XhlA: Haemolysin XhlA 59.6 86 0.0019 24.8 9.3 58 133-190 3-60 (71)
32 TIGR03752 conj_TIGR03752 integ 57.7 60 0.0013 35.0 9.1 39 130-168 67-105 (472)
33 PF04111 APG6: Autophagy prote 57.0 67 0.0015 32.5 9.1 45 132-176 46-90 (314)
34 PRK11637 AmiB activator; Provi 56.9 87 0.0019 32.5 10.1 59 131-189 77-135 (428)
35 PF11932 DUF3450: Protein of u 56.2 1E+02 0.0022 29.7 9.8 63 130-192 57-119 (251)
36 PF02183 HALZ: Homeobox associ 53.6 43 0.00094 24.7 5.3 37 130-166 6-42 (45)
37 PF08581 Tup_N: Tup N-terminal 52.3 1.3E+02 0.0028 24.8 8.4 46 138-183 6-58 (79)
38 PRK10963 hypothetical protein; 51.6 64 0.0014 30.8 7.6 17 86-102 14-30 (223)
39 KOG3863 bZIP transcription fac 50.7 40 0.00087 37.3 6.6 70 88-176 479-551 (604)
40 PF00038 Filament: Intermediat 50.2 1.1E+02 0.0025 29.8 9.3 54 131-184 211-264 (312)
41 PRK15396 murein lipoprotein; P 50.1 90 0.0019 25.8 7.1 49 130-178 26-74 (78)
42 KOG2196 Nuclear porin [Nuclear 49.0 88 0.0019 31.2 8.1 45 131-175 115-159 (254)
43 PF12329 TMF_DNA_bd: TATA elem 47.8 55 0.0012 26.4 5.5 42 134-175 31-72 (74)
44 PF07200 Mod_r: Modifier of ru 47.5 1.3E+02 0.0028 26.5 8.4 68 130-202 35-102 (150)
45 COG4942 Membrane-bound metallo 47.3 1.2E+02 0.0025 32.4 9.2 63 130-192 60-125 (420)
46 TIGR00414 serS seryl-tRNA synt 47.3 1E+02 0.0022 32.3 8.9 61 130-190 38-102 (418)
47 PF08317 Spc7: Spc7 kinetochor 47.2 1.2E+02 0.0025 30.6 9.0 44 140-183 213-256 (325)
48 PF04201 TPD52: Tumour protein 46.4 60 0.0013 30.4 6.2 38 136-173 29-66 (162)
49 PRK11637 AmiB activator; Provi 46.3 1.3E+02 0.0028 31.2 9.4 39 132-170 85-123 (428)
50 PF11559 ADIP: Afadin- and alp 45.7 2E+02 0.0043 25.5 9.3 50 132-181 55-104 (151)
51 PF04880 NUDE_C: NUDE protein, 45.2 12 0.00027 34.9 1.6 41 132-177 17-57 (166)
52 KOG4005 Transcription factor X 45.1 1.2E+02 0.0026 30.4 8.3 54 131-184 92-150 (292)
53 PF10805 DUF2730: Protein of u 45.0 1.5E+02 0.0032 25.4 8.0 51 133-183 39-91 (106)
54 PF10224 DUF2205: Predicted co 44.4 1.3E+02 0.0028 25.0 7.2 47 130-176 17-63 (80)
55 KOG2129 Uncharacterized conser 44.4 2E+02 0.0042 31.1 10.2 19 232-250 358-376 (552)
56 PF07676 PD40: WD40-like Beta 43.9 17 0.00036 24.6 1.7 23 22-44 4-26 (39)
57 PRK00888 ftsB cell division pr 43.5 66 0.0014 27.6 5.7 35 137-171 28-62 (105)
58 PRK05431 seryl-tRNA synthetase 43.4 1.1E+02 0.0024 32.1 8.4 62 130-191 36-100 (425)
59 PF08826 DMPK_coil: DMPK coile 43.3 1.6E+02 0.0036 23.2 8.1 39 135-173 17-55 (61)
60 PRK10884 SH3 domain-containing 42.1 1.3E+02 0.0029 28.8 8.0 27 73-99 65-93 (206)
61 PRK09973 putative outer membra 41.8 1.3E+02 0.0028 25.4 6.9 48 130-177 25-72 (85)
62 PRK10884 SH3 domain-containing 41.7 89 0.0019 30.0 6.8 29 148-176 137-165 (206)
63 PF04156 IncA: IncA protein; 41.6 2.2E+02 0.0048 25.8 9.2 61 131-191 90-150 (191)
64 KOG4196 bZIP transcription fac 41.5 85 0.0018 28.5 6.2 42 140-188 78-119 (135)
65 PF13747 DUF4164: Domain of un 41.0 2.1E+02 0.0045 23.9 8.1 46 132-177 35-80 (89)
66 PRK06800 fliH flagellar assemb 40.6 1.4E+02 0.0031 28.9 7.8 39 131-169 33-71 (228)
67 KOG4010 Coiled-coil protein TP 40.5 80 0.0017 30.4 6.1 39 136-174 44-82 (208)
68 TIGR02894 DNA_bind_RsfA transc 40.2 1.3E+02 0.0027 28.3 7.3 42 130-171 105-146 (161)
69 PF07106 TBPIP: Tat binding pr 40.2 1.1E+02 0.0025 27.6 7.0 31 131-161 74-104 (169)
70 smart00338 BRLZ basic region l 39.7 90 0.002 23.9 5.4 28 133-160 30-57 (65)
71 PRK15422 septal ring assembly 39.7 1.1E+02 0.0024 25.5 6.1 23 138-160 41-63 (79)
72 PRK10803 tol-pal system protei 39.7 1.3E+02 0.0029 29.5 7.9 36 152-187 63-98 (263)
73 PF12718 Tropomyosin_1: Tropom 39.3 2.2E+02 0.0047 25.6 8.6 18 149-166 34-51 (143)
74 PF07106 TBPIP: Tat binding pr 38.5 1.8E+02 0.0039 26.3 8.1 49 130-178 80-130 (169)
75 PF01519 DUF16: Protein of unk 38.3 1.3E+02 0.0028 26.2 6.6 41 137-177 61-101 (102)
76 PF04977 DivIC: Septum formati 37.8 95 0.0021 23.9 5.4 32 138-169 19-50 (80)
77 PF10226 DUF2216: Uncharacteri 37.7 2.1E+02 0.0045 27.6 8.4 53 132-184 51-128 (195)
78 PLN02678 seryl-tRNA synthetase 37.5 1.6E+02 0.0034 31.6 8.5 62 130-191 41-105 (448)
79 KOG4360 Uncharacterized coiled 37.5 1.6E+02 0.0034 32.5 8.4 57 132-188 222-278 (596)
80 PF08826 DMPK_coil: DMPK coile 36.9 2.1E+02 0.0046 22.6 7.5 48 132-183 4-51 (61)
81 smart00787 Spc7 Spc7 kinetocho 36.8 2.1E+02 0.0046 29.1 9.0 47 141-187 209-255 (312)
82 PF07200 Mod_r: Modifier of ru 36.6 2.4E+02 0.0052 24.8 8.3 37 134-170 53-89 (150)
83 PF00170 bZIP_1: bZIP transcri 36.5 1.2E+02 0.0026 23.1 5.7 24 134-157 31-54 (64)
84 PLN02320 seryl-tRNA synthetase 36.3 1.6E+02 0.0035 32.0 8.5 59 130-188 101-161 (502)
85 PF13874 Nup54: Nucleoporin co 36.2 2.2E+02 0.0047 25.3 8.0 51 137-187 45-95 (141)
86 PRK10803 tol-pal system protei 36.1 2.3E+02 0.0051 27.8 9.0 36 141-176 59-94 (263)
87 COG3883 Uncharacterized protei 35.7 2.1E+02 0.0046 28.7 8.6 58 134-195 57-114 (265)
88 PF11853 DUF3373: Protein of u 35.4 34 0.00073 37.0 3.2 26 135-161 24-49 (489)
89 PF08317 Spc7: Spc7 kinetochor 35.4 2.4E+02 0.0052 28.4 9.1 37 131-167 211-247 (325)
90 PF10458 Val_tRNA-synt_C: Valy 35.1 1E+02 0.0022 24.0 5.1 20 136-155 4-23 (66)
91 PRK13729 conjugal transfer pil 34.8 99 0.0022 33.4 6.5 40 146-185 79-118 (475)
92 PF14282 FlxA: FlxA-like prote 34.6 2E+02 0.0042 24.6 7.2 43 135-177 18-64 (106)
93 PF10267 Tmemb_cc2: Predicted 34.5 1.4E+02 0.0031 31.5 7.5 28 41-68 119-146 (395)
94 COG1579 Zn-ribbon protein, pos 33.9 1.8E+02 0.0038 28.8 7.6 60 133-192 49-117 (239)
95 KOG4196 bZIP transcription fac 33.2 2.2E+02 0.0049 25.9 7.5 20 151-170 48-67 (135)
96 PF12325 TMF_TATA_bd: TATA ele 33.0 3.5E+02 0.0075 23.9 9.9 51 131-181 18-68 (120)
97 PRK00295 hypothetical protein; 32.9 2.5E+02 0.0054 22.3 7.1 33 144-176 20-52 (68)
98 PF07407 Seadorna_VP6: Seadorn 32.7 2E+02 0.0043 30.1 8.0 26 130-155 33-58 (420)
99 PRK09039 hypothetical protein; 32.5 2.9E+02 0.0062 28.3 9.2 36 140-175 127-162 (343)
100 PF05377 FlaC_arch: Flagella a 31.9 1.8E+02 0.004 22.6 5.9 34 133-166 4-37 (55)
101 PRK00888 ftsB cell division pr 31.8 1.6E+02 0.0034 25.2 6.2 32 133-164 31-62 (105)
102 PF08172 CASP_C: CASP C termin 31.5 1.2E+02 0.0026 29.9 6.1 39 134-172 84-122 (248)
103 PF06156 DUF972: Protein of un 31.4 3.5E+02 0.0075 23.4 8.3 41 133-173 5-45 (107)
104 PF11559 ADIP: Afadin- and alp 31.1 3.7E+02 0.0081 23.7 9.6 45 133-177 70-114 (151)
105 PF10211 Ax_dynein_light: Axon 31.0 3.3E+02 0.0071 25.6 8.7 34 132-165 123-156 (189)
106 PF09304 Cortex-I_coil: Cortex 30.8 3.7E+02 0.0081 23.6 9.3 45 132-176 19-63 (107)
107 PF04420 CHD5: CHD5-like prote 30.7 1.2E+02 0.0027 27.6 5.7 73 130-202 41-119 (161)
108 PF00170 bZIP_1: bZIP transcri 30.5 2.4E+02 0.0053 21.4 6.5 34 137-170 27-60 (64)
109 PF04102 SlyX: SlyX; InterPro 30.5 2E+02 0.0043 22.7 6.1 36 141-176 16-51 (69)
110 PF09726 Macoilin: Transmembra 29.9 2E+02 0.0043 32.6 8.1 28 131-158 420-447 (697)
111 PF07407 Seadorna_VP6: Seadorn 29.2 2.6E+02 0.0057 29.3 8.1 44 135-178 31-76 (420)
112 PF02344 Myc-LZ: Myc leucine z 29.0 1.2E+02 0.0026 21.3 3.9 25 132-156 4-28 (32)
113 smart00338 BRLZ basic region l 28.9 2.2E+02 0.0049 21.7 6.1 35 137-171 27-61 (65)
114 PF05064 Nsp1_C: Nsp1-like C-t 28.6 30 0.00064 30.0 1.2 39 132-170 60-98 (116)
115 PRK00846 hypothetical protein; 28.6 3E+02 0.0066 22.7 7.0 32 145-176 29-60 (77)
116 PF04849 HAP1_N: HAP1 N-termin 28.4 3.2E+02 0.007 28.0 8.6 52 139-190 230-281 (306)
117 KOG0977 Nuclear envelope prote 28.4 2.8E+02 0.0061 30.6 8.7 70 132-201 165-247 (546)
118 PF12308 Noelin-1: Neurogenesi 28.4 2.5E+02 0.0055 24.4 6.7 54 131-184 42-95 (101)
119 PRK04325 hypothetical protein; 28.4 2.8E+02 0.0061 22.3 6.7 30 145-174 25-54 (74)
120 cd00632 Prefoldin_beta Prefold 28.2 2.1E+02 0.0045 24.0 6.3 40 137-176 64-103 (105)
121 COG1345 FliD Flagellar capping 28.2 2.5E+02 0.0053 30.4 8.2 57 130-189 423-479 (483)
122 PF04111 APG6: Autophagy prote 28.0 3.9E+02 0.0084 27.1 9.2 9 267-275 230-238 (314)
123 PRK00736 hypothetical protein; 27.9 3.1E+02 0.0067 21.7 6.9 32 144-175 20-51 (68)
124 PF10018 Med4: Vitamin-D-recep 27.8 3.8E+02 0.0082 24.9 8.5 44 145-189 11-54 (188)
125 PRK04406 hypothetical protein; 27.7 2.9E+02 0.0062 22.5 6.7 25 150-174 32-56 (75)
126 PRK10698 phage shock protein P 27.4 3.1E+02 0.0068 26.3 8.0 46 132-177 102-147 (222)
127 PF12718 Tropomyosin_1: Tropom 26.6 4.5E+02 0.0097 23.6 8.4 31 132-162 31-61 (143)
128 PRK13729 conjugal transfer pil 26.4 2.8E+02 0.0062 30.1 8.2 43 131-173 78-120 (475)
129 COG4467 Regulator of replicati 26.4 2.4E+02 0.0051 25.1 6.2 31 145-175 24-54 (114)
130 PF10186 Atg14: UV radiation r 26.3 5.7E+02 0.012 24.3 9.7 23 137-159 64-86 (302)
131 PRK02793 phi X174 lysis protei 25.8 3.4E+02 0.0074 21.8 6.7 30 146-175 25-54 (72)
132 PF07888 CALCOCO1: Calcium bin 25.7 4.3E+02 0.0093 29.3 9.5 31 354-384 429-459 (546)
133 KOG1103 Predicted coiled-coil 25.7 2.4E+02 0.0052 29.9 7.2 51 132-182 241-291 (561)
134 TIGR00219 mreC rod shape-deter 25.5 2.5E+02 0.0055 27.9 7.3 25 137-161 67-91 (283)
135 PF12269 zf-CpG_bind_C: CpG bi 25.3 1.6E+02 0.0036 29.0 5.8 35 158-192 30-64 (236)
136 PRK13169 DNA replication intia 25.3 4.6E+02 0.01 22.9 8.2 37 134-170 6-42 (110)
137 TIGR02132 phaR_Bmeg polyhydrox 25.1 3.3E+02 0.0072 26.1 7.5 29 160-188 110-138 (189)
138 KOG4497 Uncharacterized conser 25.1 68 0.0015 33.6 3.2 77 14-95 162-258 (447)
139 PF08614 ATG16: Autophagy prot 24.5 5.7E+02 0.012 23.7 9.7 48 132-179 119-166 (194)
140 COG3074 Uncharacterized protei 24.5 4.1E+02 0.0088 22.0 7.9 35 143-177 18-52 (79)
141 PF10146 zf-C4H2: Zinc finger- 24.2 6.1E+02 0.013 24.8 9.4 41 131-171 34-74 (230)
142 PHA02562 46 endonuclease subun 24.0 3.9E+02 0.0084 28.2 8.7 55 146-200 361-421 (562)
143 PRK14127 cell division protein 23.9 2.2E+02 0.0048 24.9 5.7 50 130-179 38-100 (109)
144 PF10224 DUF2205: Predicted co 23.5 4.3E+02 0.0094 21.9 8.8 48 145-192 18-65 (80)
145 PF00038 Filament: Intermediat 23.4 5.8E+02 0.013 24.9 9.3 39 142-180 215-253 (312)
146 PF02994 Transposase_22: L1 tr 23.4 1.2E+02 0.0027 31.2 4.8 52 133-184 109-164 (370)
147 COG5613 Uncharacterized conser 23.4 5E+02 0.011 27.5 8.9 62 131-192 325-386 (400)
148 PRK02119 hypothetical protein; 23.3 4E+02 0.0086 21.5 6.7 19 156-174 36-54 (73)
149 PF11285 DUF3086: Protein of u 23.3 4.4E+02 0.0095 26.7 8.3 42 138-179 6-55 (283)
150 PF07888 CALCOCO1: Calcium bin 23.2 5.1E+02 0.011 28.7 9.5 7 49-55 77-83 (546)
151 PF04156 IncA: IncA protein; 23.0 5.7E+02 0.012 23.1 9.4 16 140-155 134-149 (191)
152 TIGR03752 conj_TIGR03752 integ 23.0 3.9E+02 0.0085 29.1 8.4 46 130-175 60-105 (472)
153 PF10805 DUF2730: Protein of u 22.8 4.8E+02 0.01 22.2 7.6 34 149-182 64-97 (106)
154 COG5481 Uncharacterized conser 22.0 2.8E+02 0.0062 22.2 5.4 23 148-170 9-31 (67)
155 PRK14153 heat shock protein Gr 22.0 5.5E+02 0.012 24.6 8.4 38 137-174 34-71 (194)
156 KOG0977 Nuclear envelope prote 21.9 3.9E+02 0.0085 29.6 8.3 44 131-174 150-193 (546)
157 PF15456 Uds1: Up-regulated Du 21.6 3.4E+02 0.0074 24.1 6.6 41 135-176 21-61 (124)
158 PF07334 IFP_35_N: Interferon- 21.5 1.7E+02 0.0036 24.3 4.2 19 135-153 6-24 (76)
159 COG3159 Uncharacterized protei 21.4 2E+02 0.0042 28.3 5.3 23 83-105 12-34 (218)
160 PF08614 ATG16: Autophagy prot 21.3 6.6E+02 0.014 23.3 9.9 48 131-178 125-172 (194)
161 PF14193 DUF4315: Domain of un 21.3 4.2E+02 0.0091 22.1 6.6 51 150-203 8-59 (83)
162 PF05531 NPV_P10: Nucleopolyhe 21.0 4.8E+02 0.01 21.5 6.8 52 134-185 9-63 (75)
163 KOG0933 Structural maintenance 21.0 4.5E+02 0.0098 31.4 8.8 58 130-187 816-873 (1174)
164 KOG0996 Structural maintenance 20.9 4.4E+02 0.0095 31.9 8.8 47 131-177 544-590 (1293)
165 PRK07857 hypothetical protein; 20.9 4.2E+02 0.0091 23.1 6.8 61 136-196 28-91 (106)
166 COG4026 Uncharacterized protei 20.8 7.2E+02 0.016 24.9 9.0 52 132-183 131-182 (290)
167 COG1382 GimC Prefoldin, chaper 20.8 3.3E+02 0.0073 24.3 6.3 10 141-150 75-84 (119)
168 PF00261 Tropomyosin: Tropomyo 20.5 4.3E+02 0.0094 25.3 7.6 44 134-177 6-49 (237)
169 PF13094 CENP-Q: CENP-Q, a CEN 20.4 4.2E+02 0.0091 23.7 7.1 54 132-185 37-90 (160)
170 PRK09841 cryptic autophosphory 20.3 5.1E+02 0.011 29.0 9.1 51 154-204 343-393 (726)
171 KOG2264 Exostosin EXT1L [Signa 20.3 2.5E+02 0.0053 31.6 6.3 22 132-153 103-124 (907)
172 PF14282 FlxA: FlxA-like prote 20.2 5.2E+02 0.011 22.0 7.2 51 129-179 19-73 (106)
173 PF14662 CCDC155: Coiled-coil 20.2 7.9E+02 0.017 23.7 9.1 44 131-174 83-126 (193)
174 TIGR02338 gimC_beta prefoldin, 20.1 3.6E+02 0.0079 22.8 6.3 37 138-174 69-105 (110)
175 PF01920 Prefoldin_2: Prefoldi 20.1 3.7E+02 0.008 21.7 6.2 38 137-174 63-100 (106)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=1e-47 Score=373.51 Aligned_cols=224 Identities=42% Similarity=0.622 Sum_probs=185.1
Q ss_pred CCCCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhccCCcCCCChhhHHhhhcccceeeec--CCCcee
Q 016378 8 GSNSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKID--TDRWEF 85 (390)
Q Consensus 8 g~~~~~~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLPkyFKhsnfsSFvRQLN~YGFrKv~--~d~weF 85 (390)
....+++|+.|||.||+||++++||+|+++|+||||||+.+|++.+||+||||+||+|||||||+||||||+ +++|||
T Consensus 8 ~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF 87 (304)
T KOG0627|consen 8 EASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEF 87 (304)
T ss_pred ccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceee
Confidence 334699999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ecCCcccCcccccccccccCCCCCCcc---hhhhccccccccchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 016378 86 ANDGFVRDQKHLLNNICRRKNTQGSEQ---RKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETA 162 (390)
Q Consensus 86 ~H~~F~Rg~~~LL~~IkRkk~~~~~~~---~k~~~q~~~s~~~~~~~e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~l 162 (390)
+|++|+||+++||++|+||++.+.... .............+.......+..++..|+.+++.|+.|+++||+++..+
T Consensus 88 ~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~ 167 (304)
T KOG0627|consen 88 SNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDAL 167 (304)
T ss_pred cChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999998866432 11000000011122334566788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhcccccccccccccCccccccccCCCCCCCCCceEeeCCCCCC
Q 016378 163 DNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDE 242 (390)
Q Consensus 163 e~el~~L~eRLq~mEq~QqQMlsFLakamqnP~fl~ql~~~ke~~~r~~~~~~~~~~~~~~~~~~~~~~~iv~yqp~~~~ 242 (390)
.++++.+.+++..++++|++|+.|+++++++|+|+.++.+.......+...+.. .....+++|+|..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 236 (304)
T KOG0627|consen 168 RATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQPGNKNFKELNSE-----------PSYPKSVTRQPSAND 236 (304)
T ss_pred HHHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccchhhhhhccccccCC-----------CCCccceeecCCCCc
Confidence 999999999999999999999999999999999999998765311111111110 005677777777776
No 2
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=3.8e-35 Score=245.16 Aligned_cols=93 Identities=53% Similarity=0.982 Sum_probs=81.6
Q ss_pred cHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhccCCcCCCChhhHHhhhcccceeeecCC---------Cce
Q 016378 14 PFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTD---------RWE 84 (390)
Q Consensus 14 ~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLPkyFKhsnfsSFvRQLN~YGFrKv~~d---------~we 84 (390)
.||.|||+||+||++++||+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+... .|+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 49999999999999999999999999999999999999999999999999999999999999999653 399
Q ss_pred eecCCcccCcccccccccccCC
Q 016378 85 FANDGFVRDQKHLLNNICRRKN 106 (390)
Q Consensus 85 F~H~~F~Rg~~~LL~~IkRkk~ 106 (390)
|+|++|+||++++|..|+|+++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999875
No 3
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=6.3e-35 Score=245.78 Aligned_cols=94 Identities=65% Similarity=1.134 Sum_probs=90.8
Q ss_pred CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhccCCcCCCChhhHHhhhcccceeeecC----------
Q 016378 11 SVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDT---------- 80 (390)
Q Consensus 11 ~~~~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLPkyFKhsnfsSFvRQLN~YGFrKv~~---------- 80 (390)
.+|.|+.|||+||+|+++++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 3789999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred -CCceeecCCcccCccccccccccc
Q 016378 81 -DRWEFANDGFVRDQKHLLNNICRR 104 (390)
Q Consensus 81 -d~weF~H~~F~Rg~~~LL~~IkRk 104 (390)
+.|+|+|++|+||+++||.+|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 789999999999999999999996
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.97 E-value=3.4e-33 Score=271.65 Aligned_cols=168 Identities=32% Similarity=0.507 Sum_probs=122.3
Q ss_pred CCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEecchhhhhhhccCCcCCCChhhHHhhhcccceeeec-C--------
Q 016378 10 NSVAPFLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKID-T-------- 80 (390)
Q Consensus 10 ~~~~~Fl~KLy~mVed~~~~~IIsWs~~G~sFVI~d~~~F~~~VLPkyFKhsnfsSFvRQLN~YGFrKv~-~-------- 80 (390)
..++.|+.|||.||++|++.++|+|+|+|+||||+|++.|.+.|||+||||+||+|||||||+|||+||. .
T Consensus 8 ~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n 87 (282)
T COG5169 8 SQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYN 87 (282)
T ss_pred CchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccc
Confidence 3466899999999999999999999999999999999999999999999999999999999999999997 1
Q ss_pred -CCceeecCCcccCcccccccccccCCCCCCcchhhhccccccccchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 016378 81 -DRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQ 159 (390)
Q Consensus 81 -d~weF~H~~F~Rg~~~LL~~IkRkk~~~~~~~~k~~~q~~~s~~~~~~~e~~~L~~EVE~LK~dq~~L~qELv~LRQqQ 159 (390)
+.|+|.|++|++|..++|++|+|+|.+.... ... .+.+..... .+++.+-..+..+..++-+|+...
T Consensus 88 ~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~---~~~-----~~s~~~~~~----~~~~~~i~~~~~~~~~~S~l~~~~ 155 (282)
T COG5169 88 ENVWEFGNKNFQLGMIELLKKIKRKKAPSNRV---DSN-----NESKDAMMN----IEVENIILPQSELYNSLSSLSNVN 155 (282)
T ss_pred hhheeecCchhccCcHHHHHHhhhhhcCcccc---ccc-----CCCCccccc----hhhhhhhchhcccCcchhHHhhhh
Confidence 2499999999999999999999987764311 100 000100000 345555555555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 160 ETADNKLLLLRDRVQGMEKSQQQMLSFLVM 189 (390)
Q Consensus 160 e~le~el~~L~eRLq~mEq~QqQMlsFLak 189 (390)
++++..+..++..+..--..-..+.++|+.
T Consensus 156 ~~~~~~~~~lk~~~~~~~~~~~~~~~~l~~ 185 (282)
T COG5169 156 QTLLLYLNELKEYNYRNLRTIDDINAMLAD 185 (282)
T ss_pred HHHhhhhccccchhhhcccccchhhhcccC
Confidence 666656655554443333333344444433
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=96.15 E-value=0.007 Score=50.18 Aligned_cols=68 Identities=22% Similarity=0.369 Sum_probs=51.6
Q ss_pred HHHHhhccCCCCCCceEEcC-CCCeEEEecchhhhhhhcc--CCcCCCChhhHHhhhcccc----eeeecCCCcee
Q 016378 17 NKCYEMVDDESTDSIISWGQ-SNESFVIWDVTEFSVQLLP--RYFKHSNFSSFIRQLNIYG----FRKIDTDRWEF 85 (390)
Q Consensus 17 ~KLy~mVed~~~~~IIsWs~-~G~sFVI~d~~~F~~~VLP--kyFKhsnfsSFvRQLN~YG----FrKv~~d~weF 85 (390)
.=|.++|.|+++.++|+|.. .|.-|.|.||+++++. .- +.-..-+|.++-|-|..|. ..||...+..|
T Consensus 6 ~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~l-WG~~k~~~~m~yeklsR~LR~yy~k~il~kv~g~r~~Y 80 (85)
T PF00178_consen 6 QFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARL-WGKHKNRPNMNYEKLSRALRYYYKKGILEKVKGQRLVY 80 (85)
T ss_dssp HHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHH-HHHHTTSTT-SHHHHHHHHHHHHHTTSEEEETTSTTEE
T ss_pred HHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHH-HHHHcCCccccHHHHHHHHHHHhhCCeEEecCCcEEEE
Confidence 34678899999999999999 9999999999999863 22 3344568999999998874 35555555554
No 6
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=93.00 E-value=0.17 Score=42.44 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=44.3
Q ss_pred HHhhccCCCCCCceEEcC-CCCeEEEecchhhhhhh-ccCCcCCCChhhHHhhhcccc
Q 016378 19 CYEMVDDESTDSIISWGQ-SNESFVIWDVTEFSVQL-LPRYFKHSNFSSFIRQLNIYG 74 (390)
Q Consensus 19 Ly~mVed~~~~~IIsWs~-~G~sFVI~d~~~F~~~V-LPkyFKhsnfsSFvRQLN~YG 74 (390)
|.++|.||++.++|+|.. ++.-|.+.|+++.++.- .-+.=..-||...-|-|..|-
T Consensus 8 L~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy 65 (87)
T smart00413 8 LLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY 65 (87)
T ss_pred HHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence 678999999999999998 68899999999887631 123334567899999988773
No 7
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.59 E-value=1.8 Score=35.33 Aligned_cols=51 Identities=24% Similarity=0.355 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ 182 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQ 182 (390)
.-|.-||+.||..++.|++|.+.+++..+.++.+...+.+...+-..+.+.
T Consensus 21 ~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346679999999999999999999888888888777777666555444433
No 8
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.52 E-value=6 Score=34.93 Aligned_cols=60 Identities=22% Similarity=0.377 Sum_probs=47.2
Q ss_pred hhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 128 KIDHSALWKEVENLKAGKNALTQELLKLRQYQET---ADNKLLLLRDRVQGMEKSQQQMLSFL 187 (390)
Q Consensus 128 ~~e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~---le~el~~L~eRLq~mEq~QqQMlsFL 187 (390)
+.+...+..++.+|...+..+..|+++|-...+. ...++..|+..+..++.+.+-++.+|
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888889999999999999999777754 45667778888888888888777665
No 9
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.22 E-value=7.3 Score=31.50 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 176 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~m 176 (390)
..|..||+.||.++..|..+...|+++++.+..+-.....||+++
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777766666666666666666665555556666544
No 10
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=84.68 E-value=4.3 Score=32.41 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 178 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq 178 (390)
..|..|...|+.+...+..|=..|.++++....++.+|-.||..||+
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 34555555566666666666666666666666666666666666654
No 11
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=84.59 E-value=2.3 Score=37.76 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhcccc
Q 016378 146 NALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPK 204 (390)
Q Consensus 146 ~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakamqnP~fl~ql~~~k 204 (390)
++++.|+..+++.+..+...+.+|-++++..++.+..|.++-|+++++ +...+.+-
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkC 57 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKC 57 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhc
Confidence 456788899999999999999999999999999999999999999997 55555443
No 12
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=83.17 E-value=2.7 Score=39.60 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=50.6
Q ss_pred CcHHHHHHhhccCCCCCCceEEcC-CCCeEEEecchhhhhhhc-cCCcCCCChhhHHhhhcccc----eeeecCCCcee
Q 016378 13 APFLNKCYEMVDDESTDSIISWGQ-SNESFVIWDVTEFSVQLL-PRYFKHSNFSSFIRQLNIYG----FRKIDTDRWEF 85 (390)
Q Consensus 13 ~~Fl~KLy~mVed~~~~~IIsWs~-~G~sFVI~d~~~F~~~VL-PkyFKhsnfsSFvRQLN~YG----FrKv~~d~weF 85 (390)
-....=|-++|.|++..++|+|.. +|--|++.||++-++.-= -+.=.+-||.-.-|-|..|= -+||...+..|
T Consensus 69 iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyyY~kni~~Kv~Gkr~~Y 147 (177)
T KOG3806|consen 69 IQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYYYDKNILKKVPGKRFVY 147 (177)
T ss_pred hhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCceeecCCceEEE
Confidence 334444567889999999999999 688999999999887421 23334567777778777652 24554444444
No 13
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.85 E-value=9.8 Score=31.58 Aligned_cols=52 Identities=25% Similarity=0.373 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQM 183 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQM 183 (390)
.-|.-||+.||.++..|.+|...++.....+..+...|++-...-+.|.+.+
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566799999999999999988855555555555555544444443333333
No 14
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.70 E-value=12 Score=34.02 Aligned_cols=61 Identities=26% Similarity=0.317 Sum_probs=46.4
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMA 190 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLaka 190 (390)
....|..+++.+....+.|..||..++.+...+...++.+..|+...|..+-.+..+|..+
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455667777777777778888888888888888888888888888887777766666543
No 15
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.46 E-value=11 Score=36.23 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=48.8
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ 192 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakamq 192 (390)
+...|..++..|+++...|.....++.......+.++..|.+++...+...+.+.-++...+.
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777788888888888888888888887777766655
No 16
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=76.41 E-value=11 Score=35.67 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=26.5
Q ss_pred ecCCcccCcccccccccccCCCCCCcchhhhccccccccchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 016378 86 ANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNK 165 (390)
Q Consensus 86 ~H~~F~Rg~~~LL~~IkRkk~~~~~~~~k~~~q~~~s~~~~~~~e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~e 165 (390)
.||.|...+++||..|+=. +..+ + + .+-.+.+ +..||++++.++.+
T Consensus 17 ~~PdFf~~~~~ll~~l~~p---h~~~---------~-a-------vSL~erQ--------------~~~LR~~~~~L~~~ 62 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLP---HPSG---------G-A-------VSLVERQ--------------LERLRERNRQLEEQ 62 (225)
T ss_dssp -------------------------------------H-------HHHHHHH--------------HHHHHHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCC---CCCC---------C-c-------ccHHHHH--------------HHHHHHHHHHHHHH
Confidence 7999999999999988632 1100 0 0 1112223 34445555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016378 166 LLLLRDRVQGMEKSQQQMLSFLVMAMQN 193 (390)
Q Consensus 166 l~~L~eRLq~mEq~QqQMlsFLakamqn 193 (390)
+..|.+.-+.=|+.++++..+..++++.
T Consensus 63 l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a 90 (225)
T PF04340_consen 63 LEELIENARENEAIFQRLHRLVLALLAA 90 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666666666666666666666666664
No 17
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.29 E-value=12 Score=42.10 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSF 196 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakamqnP~f 196 (390)
..+..-+..|+..+..-.+++..++++.+.+......|.+|+.....+|+.++.-+..+++....
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~ 625 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444466688888888888888999999999999999999999999999999888888775543
No 18
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=74.73 E-value=28 Score=28.10 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLV 188 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLa 188 (390)
...|..|-+.|-.....+..-+-+||.+...++..+..+..++...+..-..+-.++.
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888888888888888889999999999999999888888877666655553
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=74.03 E-value=22 Score=33.21 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=42.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 138 VENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMA 190 (390)
Q Consensus 138 VE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLaka 190 (390)
...++.++..|..|+..|+++++.++.++..|..++..++...+.|+..+-+|
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888888888888888888888888888888888887776554
No 20
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.11 E-value=20 Score=26.47 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 135 WKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 173 (390)
Q Consensus 135 ~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRL 173 (390)
+.+-+.||..-..|..+...|.++.+.+..++..|..++
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555555555555555555554
No 21
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=68.99 E-value=41 Score=26.94 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 133 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKS 179 (390)
Q Consensus 133 ~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~ 179 (390)
.|..-.+.|+.++..|.+++..++.+...+-.++...+.|+..|-.+
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555667777777777777777777777766776667777655443
No 22
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=67.89 E-value=51 Score=29.95 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 184 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMl 184 (390)
...|..++..|+.++..|.+++...+.+...++.....+...|+..|+..-+|.
T Consensus 68 l~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~ 121 (140)
T PF10473_consen 68 LNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLK 121 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666655555555555555555555555544444
No 23
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=66.75 E-value=45 Score=25.94 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 159 QETADNKLLLLRDRVQGMEKSQQQMLSFLVMA 190 (390)
Q Consensus 159 Qe~le~el~~L~eRLq~mEq~QqQMlsFLaka 190 (390)
..+...+...+++.++.++++-+.+|+.--.+
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555666666666666544333
No 24
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=66.23 E-value=45 Score=26.05 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 178 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq 178 (390)
..|..+|..|..+...|..++..+|...+....+.....+||..+-+
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~ 52 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 45777888899999999999999988888888888888889886643
No 25
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.11 E-value=38 Score=37.38 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=53.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 016378 135 WKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSF 196 (390)
Q Consensus 135 ~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakamqnP~f 196 (390)
..-+..|+..+..--|++..++++.+.++.....|.+|++....+|.-++..+.++|+.|+-
T Consensus 587 qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~ 648 (741)
T KOG4460|consen 587 QRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHS 648 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence 33356778777777888999999999999888999999999999999999999999998754
No 26
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=64.80 E-value=49 Score=32.62 Aligned_cols=56 Identities=25% Similarity=0.280 Sum_probs=46.8
Q ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 129 IDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 184 (390)
Q Consensus 129 ~e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMl 184 (390)
.....|..|+..+++....|..|+..+...++.+..++..++.++..+|+.-.-.-
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999998888888887776554443
No 27
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=64.16 E-value=32 Score=29.76 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 133 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 178 (390)
Q Consensus 133 ~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq 178 (390)
.+...+..|-.+...|...+..|-.++..+.-+...|++||...++
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555566666666666666677778888876654
No 28
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=64.13 E-value=76 Score=25.66 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=24.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 135 WKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 184 (390)
Q Consensus 135 ~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMl 184 (390)
...|..|+.+...|..+...|.++...+..+...+++...+...+...++
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555444544455555555555544444444444443
No 29
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=61.33 E-value=54 Score=27.34 Aligned_cols=58 Identities=24% Similarity=0.418 Sum_probs=41.0
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQY---QETADNKLLLLRDRVQGMEKSQQQMLSFL 187 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQq---Qe~le~el~~L~eRLq~mEq~QqQMlsFL 187 (390)
....+..+++.|+.+++.+.+++..+... .+.+-.++..+...+..+|.....+-.-+
T Consensus 37 ~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 37 ERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999998887652 44555566666666666665555544433
No 30
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=60.38 E-value=40 Score=29.44 Aligned_cols=45 Identities=20% Similarity=0.187 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 176 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~m 176 (390)
..|...+..|-.+...|.+.++.|-.++..+.-+...|++||...
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555556666666666666666666666667777788888755
No 31
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=59.56 E-value=86 Score=24.76 Aligned_cols=58 Identities=7% Similarity=0.193 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 133 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMA 190 (390)
Q Consensus 133 ~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLaka 190 (390)
.+...+.+++...+.+...+..+.+.....+.++.++.+++..++..+.=+..++..+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiGa 60 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIGA 60 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888888888888888999999999999998888776555543
No 32
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.67 E-value=60 Score=35.04 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLL 168 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~ 168 (390)
....+++++..|..++..|.+|..+||++...++.+++.
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 345677777778888888888888888877777666643
No 33
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=56.99 E-value=67 Score=32.46 Aligned_cols=45 Identities=29% Similarity=0.398 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 176 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~m 176 (390)
..+..|++.|+.+...+.+||..|.++.+.+..++..++......
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666555555555555444443
No 34
>PRK11637 AmiB activator; Provisional
Probab=56.93 E-value=87 Score=32.52 Aligned_cols=59 Identities=8% Similarity=0.029 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 189 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLak 189 (390)
...+..+|..+..+.+.+.+++..+.+++..++.++..++.++...+....+.+..+++
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666666666666666666556555555554
No 35
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=56.22 E-value=1e+02 Score=29.71 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ 192 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakamq 192 (390)
....+..|++.|+..+..+...+..++++...+..++..+..--+++.--..+|+.-|...+.
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666677777777777777666666666666666666666666666666666666655444
No 36
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.63 E-value=43 Score=24.74 Aligned_cols=37 Identities=35% Similarity=0.345 Sum_probs=22.4
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKL 166 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el 166 (390)
++..|...-++|+.+...|.+|...|+.+...+...+
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566666666666666666666666666555444
No 37
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=52.27 E-value=1.3e+02 Score=24.83 Aligned_cols=46 Identities=17% Similarity=0.393 Sum_probs=26.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 016378 138 VENLKAGKNALTQELLKLRQYQETADNK-------LLLLRDRVQGMEKSQQQM 183 (390)
Q Consensus 138 VE~LK~dq~~L~qELv~LRQqQe~le~e-------l~~L~eRLq~mEq~QqQM 183 (390)
++.+|.+...+.+|+...+.+....+++ |..+++.+-.+|..+.+|
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555544443 345556666666666555
No 38
>PRK10963 hypothetical protein; Provisional
Probab=51.58 E-value=64 Score=30.80 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=14.9
Q ss_pred ecCCcccCccccccccc
Q 016378 86 ANDGFVRDQKHLLNNIC 102 (390)
Q Consensus 86 ~H~~F~Rg~~~LL~~Ik 102 (390)
.||.|.-.+++||..|+
T Consensus 14 ~~PdFf~~h~~Ll~~L~ 30 (223)
T PRK10963 14 QNPDFFIRNARLVEQMR 30 (223)
T ss_pred HCchHHhhCHHHHHhcc
Confidence 69999999999999664
No 39
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=50.72 E-value=40 Score=37.34 Aligned_cols=70 Identities=26% Similarity=0.329 Sum_probs=39.0
Q ss_pred CCcccCcccccccccccCCCCCCcchhhhccccccccchhhh---hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 016378 88 DGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKI---DHSALWKEVENLKAGKNALTQELLKLRQYQETADN 164 (390)
Q Consensus 88 ~~F~Rg~~~LL~~IkRkk~~~~~~~~k~~~q~~~s~~~~~~~---e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~ 164 (390)
..|..-+..|++.|+||..-+.+.+ .|... -...|+.||+.|++++..|.+|-.. +.+
T Consensus 479 ~~lte~QLslIrDIRRRgKNkvAAQ------------nCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~-------~d~ 539 (604)
T KOG3863|consen 479 YKLTEEQLSLIRDIRRRGKNKVAAQ------------NCRKRKLDCILNLEDEVEKLQKEKEQLLRERDE-------LDS 539 (604)
T ss_pred cccCHHHHHHhhccccccccchhcc------------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 3555668889999999854433211 12211 2345666777777777666665443 344
Q ss_pred HHHHHHHHHHHH
Q 016378 165 KLLLLRDRVQGM 176 (390)
Q Consensus 165 el~~L~eRLq~m 176 (390)
.|..|.+.+..+
T Consensus 540 ~L~~~kqqls~L 551 (604)
T KOG3863|consen 540 TLGVMKQQLSEL 551 (604)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 40
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=50.18 E-value=1.1e+02 Score=29.78 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 184 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMl 184 (390)
......|+..++.....|..++..|+.....++..+..++.++...-...+..+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i 264 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEI 264 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 344556777777788888888888877777777777777766665444434333
No 41
>PRK15396 murein lipoprotein; Provisional
Probab=50.13 E-value=90 Score=25.80 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=39.5
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 178 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq 178 (390)
....|..+|..|+.+...+.+++..+|...+....+-..-.+||+.+-.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~ 74 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQAT 74 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888888888888888888888886643
No 42
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=49.04 E-value=88 Score=31.16 Aligned_cols=45 Identities=27% Similarity=0.283 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 175 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~ 175 (390)
..+|..|+..++.+++.|-+||.-+-.+|+.++.-+..++..+..
T Consensus 115 I~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 115 ISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999988888876654
No 43
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.80 E-value=55 Score=26.40 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 134 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 175 (390)
Q Consensus 134 L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~ 175 (390)
+...|..||.....+..++..++........++..+++|+.+
T Consensus 31 ~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 31 LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334566666666666666777766666666777777666654
No 44
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=47.53 E-value=1.3e+02 Score=26.49 Aligned_cols=68 Identities=28% Similarity=0.295 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhcc
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQ 202 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakamqnP~fl~ql~~ 202 (390)
....+..++..|-...-.+..++..+|.+......++..+..+++..++.++.+.+-. +|..+...++
T Consensus 35 ~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~-----s~~~l~~~L~ 102 (150)
T PF07200_consen 35 EREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY-----SPDALLARLQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHH
Confidence 3445556666666666666777777777777777777777777777777666664211 4555555554
No 45
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=47.33 E-value=1.2e+02 Score=32.44 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=42.1
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME---KSQQQMLSFLVMAMQ 192 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mE---q~QqQMlsFLakamq 192 (390)
....|.+++.+++.+.+.+..++.........+...+..+..++...+ +.|+..++-+..+.+
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~ 125 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQ 125 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888887777777777777777766555444 345555544444443
No 46
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=47.27 E-value=1e+02 Score=32.28 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQY----QETADNKLLLLRDRVQGMEKSQQQMLSFLVMA 190 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQq----Qe~le~el~~L~eRLq~mEq~QqQMlsFLaka 190 (390)
....+..+++.|+.+++.+.+++..+.+. .+.+..++..+.+++...|.....+-.-+..+
T Consensus 38 ~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 38 ERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999775432 34555667778888888887777665544433
No 47
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=47.24 E-value=1.2e+02 Score=30.65 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=19.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 140 NLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQM 183 (390)
Q Consensus 140 ~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQM 183 (390)
.+|.+...+..++...++....+..++..+..++...+...+++
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444333333
No 48
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=46.38 E-value=60 Score=30.38 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=30.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 136 KEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 173 (390)
Q Consensus 136 ~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRL 173 (390)
.|-+.||.+...+..|++.|||-+..-+.+...|+++|
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45677888888888888888888877777777777775
No 49
>PRK11637 AmiB activator; Provisional
Probab=46.34 E-value=1.3e+02 Score=31.21 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLR 170 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~ 170 (390)
..+..++..+..+...+..++..+..++..++.++...+
T Consensus 85 ~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 85 SQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555444433
No 50
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=45.74 E-value=2e+02 Score=25.48 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQ 181 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~Qq 181 (390)
..+...+..+..+...|...+.+|+.+.+..+.++.....+...++....
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555554444443333
No 51
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=45.24 E-value=12 Score=34.85 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 177 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mE 177 (390)
.-|+.|| .++..|..++++||.+...+..++ .+++|+...+
T Consensus 17 alLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~~~ 57 (166)
T PF04880_consen 17 ALLESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRKAN 57 (166)
T ss_dssp HHHHHHH----HHHHHHHHCH-------------------------
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhh
Confidence 3455566 557788888888888888888888 7788876554
No 52
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=45.08 E-value=1.2e+02 Score=30.37 Aligned_cols=54 Identities=24% Similarity=0.153 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ-----GMEKSQQQML 184 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq-----~mEq~QqQMl 184 (390)
.+.|+.+|..|-.+...|..|-..||...+.+-.+-..+..+|. -++-+|++++
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 35566677777777777777777777777766666555555554 2344555544
No 53
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.97 E-value=1.5e+02 Score=25.36 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 133 ALWKEVENLKAGKNALTQELLKL--RQYQETADNKLLLLRDRVQGMEKSQQQM 183 (390)
Q Consensus 133 ~L~~EVE~LK~dq~~L~qELv~L--RQqQe~le~el~~L~eRLq~mEq~QqQM 183 (390)
.+...+....+....+.+++..| +++...+...|..++.++..++.+.+.|
T Consensus 39 ~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 39 KLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444455555555555555 5555555555555555555555555444
No 54
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=44.44 E-value=1.3e+02 Score=25.02 Aligned_cols=47 Identities=15% Similarity=0.295 Sum_probs=31.8
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 176 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~m 176 (390)
....|..++..|+.....|...+...+.+.+.+..+-..|..=+..+
T Consensus 17 ~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 17 EKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777776666666666555443
No 55
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=44.38 E-value=2e+02 Score=31.11 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=10.0
Q ss_pred ceEeeCCCCCCCCCCCCCC
Q 016378 232 MLVRYHPPIDETPKPVLKP 250 (390)
Q Consensus 232 ~iv~yqp~~~~~~~~~~~~ 250 (390)
.-|.+.||+-.+..++..|
T Consensus 358 ~~vs~~sPvs~t~s~~s~~ 376 (552)
T KOG2129|consen 358 PNVSANSPVSNTNSPASST 376 (552)
T ss_pred CccccCCCcccCCCccccc
Confidence 3455555555555555444
No 56
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=43.90 E-value=17 Score=24.60 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=16.4
Q ss_pred hccCCCCCCceEEcCCCCeEEEe
Q 016378 22 MVDDESTDSIISWGQSNESFVIW 44 (390)
Q Consensus 22 mVed~~~~~IIsWs~~G~sFVI~ 44 (390)
+++.+..+.-..|+|||+.++..
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEE
Confidence 45666667778999999998875
No 57
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=43.50 E-value=66 Score=27.57 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=22.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 137 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRD 171 (390)
Q Consensus 137 EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~e 171 (390)
....++++...+.+|+.+++++++.+..++..|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34556666666667777777777766666666654
No 58
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=43.41 E-value=1.1e+02 Score=32.15 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=45.0
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQY---QETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM 191 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQq---Qe~le~el~~L~eRLq~mEq~QqQMlsFLakam 191 (390)
....+..++++|+.+++.+.+++..+... .+.+..++..+.+++..+|..+..+-.-+...+
T Consensus 36 ~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 36 ERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999874433 234566777778888888877777655444433
No 59
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.25 E-value=1.6e+02 Score=23.18 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 135 WKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 173 (390)
Q Consensus 135 ~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRL 173 (390)
..|+...|.....+...|..-..++..+..+|..|+.++
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433
No 60
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.14 E-value=1.3e+02 Score=28.80 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=17.7
Q ss_pred cceeeec--CCCceeecCCcccCcccccc
Q 016378 73 YGFRKID--TDRWEFANDGFVRDQKHLLN 99 (390)
Q Consensus 73 YGFrKv~--~d~weF~H~~F~Rg~~~LL~ 99 (390)
.||.+|. .+.--|-|..|....|..-.
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~ 93 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRT 93 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHH
Confidence 4787874 34556778777776666543
No 61
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=41.77 E-value=1.3e+02 Score=25.37 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=41.0
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 177 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mE 177 (390)
....|..+|..|+.+...+.+++..++..-+....+-..-.+||..+.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~ 72 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQD 72 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 456778899999999999999999999998888888888889998664
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.74 E-value=89 Score=29.97 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 148 LTQELLKLRQYQETADNKLLLLRDRVQGM 176 (390)
Q Consensus 148 L~qELv~LRQqQe~le~el~~L~eRLq~m 176 (390)
|..|..+|+++.+.+..++..++..++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 63
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=41.57 E-value=2.2e+02 Score=25.84 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM 191 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakam 191 (390)
...+..|++.+.+....+..++..++..............+|++..+.....+..-+..+.
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777666666666666666777777666666665555544
No 64
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=41.51 E-value=85 Score=28.54 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=22.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 140 NLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLV 188 (390)
Q Consensus 140 ~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLa 188 (390)
.|..++..|.+|+-+|++++..+.. +++..+.+..++..|-.
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~-------E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRR-------ELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhh
Confidence 4455566666666666555555444 44444444455555543
No 65
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=41.02 E-value=2.1e+02 Score=23.89 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 177 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mE 177 (390)
..+..+|..|..+...|-++|-....+...++.--..+.+||...-
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777766666665555555555555555555443
No 66
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=40.56 E-value=1.4e+02 Score=28.88 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLL 169 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L 169 (390)
.+.+.++.+.|...+..|-+++..|++.|+.+.++-+.+
T Consensus 33 e~~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l 71 (228)
T PRK06800 33 EEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQL 71 (228)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777788888888888888888887776655443
No 67
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=40.45 E-value=80 Score=30.40 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=30.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 136 KEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 174 (390)
Q Consensus 136 ~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq 174 (390)
.|-+.||.+...+..|++.|||-+..-+.+...|.++|.
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLG 82 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLG 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355688888888888999998888877777777777663
No 68
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.19 E-value=1.3e+02 Score=28.27 Aligned_cols=42 Identities=31% Similarity=0.362 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRD 171 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~e 171 (390)
+...+..|+..|+.....|..|+.+|.+++..+.....+|-.
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666667777777777776666666666655543
No 69
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.16 E-value=1.1e+02 Score=27.59 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQET 161 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~ 161 (390)
...|..++..|+.+...|..++-.|+.+...
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELAS 104 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555554444444444444444433
No 70
>smart00338 BRLZ basic region leucin zipper.
Probab=39.73 E-value=90 Score=23.87 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=12.3
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 016378 133 ALWKEVENLKAGKNALTQELLKLRQYQE 160 (390)
Q Consensus 133 ~L~~EVE~LK~dq~~L~qELv~LRQqQe 160 (390)
.|..++..|..+...|..++..|+.++.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 71
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=39.73 E-value=1.1e+02 Score=25.48 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=9.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 016378 138 VENLKAGKNALTQELLKLRQYQE 160 (390)
Q Consensus 138 VE~LK~dq~~L~qELv~LRQqQe 160 (390)
++.++..+..|.+|..+|++++.
T Consensus 41 ~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 41 VQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333333334444444444333
No 72
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=39.66 E-value=1.3e+02 Score=29.48 Aligned_cols=36 Identities=8% Similarity=0.061 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 152 LLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFL 187 (390)
Q Consensus 152 Lv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFL 187 (390)
|..|+++...+..++..+...|+.+.++|+.+-.=|
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444445555544333
No 73
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=39.25 E-value=2.2e+02 Score=25.63 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016378 149 TQELLKLRQYQETADNKL 166 (390)
Q Consensus 149 ~qELv~LRQqQe~le~el 166 (390)
..|+..|.+....++.++
T Consensus 34 E~EI~sL~~K~~~lE~el 51 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEEL 51 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 74
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.47 E-value=1.8e+02 Score=26.26 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQ--ETADNKLLLLRDRVQGMEK 178 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQ--e~le~el~~L~eRLq~mEq 178 (390)
....|..++..|+.+...|..|+..|.... ..+..++..++..+..++.
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEE 130 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777665443 2233333344444433333
No 75
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=38.35 E-value=1.3e+02 Score=26.24 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=19.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 137 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 177 (390)
Q Consensus 137 EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mE 177 (390)
.|+.+-.+...|+.|+-..=...+.+...|..|..||..||
T Consensus 61 ~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 61 KVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444444444444444333344444455555555555443
No 76
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.78 E-value=95 Score=23.91 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=14.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 138 VENLKAGKNALTQELLKLRQYQETADNKLLLL 169 (390)
Q Consensus 138 VE~LK~dq~~L~qELv~LRQqQe~le~el~~L 169 (390)
+.+++.+...|..++..++++++.+..++..+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555555544444444444333
No 77
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=37.68 E-value=2.1e+02 Score=27.61 Aligned_cols=53 Identities=15% Similarity=0.312 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQ-------------------------ETADNKLLLLRDRVQGMEKSQQQML 184 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQ-------------------------e~le~el~~L~eRLq~mEq~QqQMl 184 (390)
.....||..||..+..|+.|-+.||.-. ..++.++..-.++|...|.+|+.++
T Consensus 51 Q~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~ 128 (195)
T PF10226_consen 51 QQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELI 128 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888888888877776543 3455566666778888888887765
No 78
>PLN02678 seryl-tRNA synthetase
Probab=37.49 E-value=1.6e+02 Score=31.57 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=42.7
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQY---QETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM 191 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQq---Qe~le~el~~L~eRLq~mEq~QqQMlsFLakam 191 (390)
....+..+++.|+.+++.+.+++..++.. .+.+-.++..|.+.+..+|.....+-+-|..++
T Consensus 41 ~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 41 EWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999998764322 223444566677777777776666655554433
No 79
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=37.46 E-value=1.6e+02 Score=32.45 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLV 188 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLa 188 (390)
.+.-+|+.++..+...|..+|+.++++...+.++...|.+.|+.+.+.|.+|..-+-
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~ 278 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELE 278 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344455666777777888888888888888888888888999999888888765443
No 80
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=36.85 E-value=2.1e+02 Score=22.58 Aligned_cols=48 Identities=27% Similarity=0.357 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQM 183 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQM 183 (390)
+.|..||.. +..+..||.+.+.-+..++.+++....|.+.++.....+
T Consensus 4 saL~~Eira----kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 4 SALEAEIRA----KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666643 677888888888777777777777777776666554443
No 81
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=36.77 E-value=2.1e+02 Score=29.05 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=21.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 141 LKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFL 187 (390)
Q Consensus 141 LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFL 187 (390)
+|.+...+..++...++.......++..+..++.......+++.+-+
T Consensus 209 lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444555555555544444444443333
No 82
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=36.58 E-value=2.4e+02 Score=24.81 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 134 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLR 170 (390)
Q Consensus 134 L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~ 170 (390)
+..+++.+|.+...+..++..|+++....+.++..+.
T Consensus 53 ~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 53 LEPELEELRSQLQELYEELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777666666665543
No 83
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.45 E-value=1.2e+02 Score=23.13 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q 016378 134 LWKEVENLKAGKNALTQELLKLRQ 157 (390)
Q Consensus 134 L~~EVE~LK~dq~~L~qELv~LRQ 157 (390)
|...+..|..+...|..++..|++
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444333333333333
No 84
>PLN02320 seryl-tRNA synthetase
Probab=36.29 E-value=1.6e+02 Score=32.02 Aligned_cols=59 Identities=22% Similarity=0.224 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQ--YQETADNKLLLLRDRVQGMEKSQQQMLSFLV 188 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQ--qQe~le~el~~L~eRLq~mEq~QqQMlsFLa 188 (390)
....+..+++.|+.+++.+.+++..-++ +.+.+..++..+++++..+|.....+-.-|.
T Consensus 101 ~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~ 161 (502)
T PLN02320 101 NMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQ 161 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999998864111 1234445566666677777666666554443
No 85
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=36.17 E-value=2.2e+02 Score=25.32 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=30.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 137 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFL 187 (390)
Q Consensus 137 EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFL 187 (390)
+++.++.....+..++..|+.+...+..++..+++|+..+.++.=+++.-+
T Consensus 45 ~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~ 95 (141)
T PF13874_consen 45 EIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQ 95 (141)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667777777766666666666666666665554444444333
No 86
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.14 E-value=2.3e+02 Score=27.79 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=18.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 141 LKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 176 (390)
Q Consensus 141 LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~m 176 (390)
|..+...|.+|+.+||-+.+...+++..+.+|-+..
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555444433
No 87
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.69 E-value=2.1e+02 Score=28.72 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 016378 134 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPS 195 (390)
Q Consensus 134 L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakamqnP~ 195 (390)
|..+|+.+...+..+..++-++.++...+..++..+++|+. .++.++.-=+++|+..|
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~----~r~~~l~~raRAmq~nG 114 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV----ERQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcC
Confidence 33344444444444444444445555555555555555553 23344444455555443
No 88
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=35.38 E-value=34 Score=37.02 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 016378 135 WKEVENLKAGKNALTQELLKLRQYQET 161 (390)
Q Consensus 135 ~~EVE~LK~dq~~L~qELv~LRQqQe~ 161 (390)
..+++.+| +++.|++||.+|++++..
T Consensus 24 ~~~~~~~q-kie~L~kql~~Lk~q~~~ 49 (489)
T PF11853_consen 24 ADDIDLLQ-KIEALKKQLEELKAQQDD 49 (489)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHhhcc
Confidence 34555555 566666666666665553
No 89
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=35.37 E-value=2.4e+02 Score=28.42 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLL 167 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~ 167 (390)
...+..++..++.+...+.+++..++.+.+.+..++.
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333333333333333
No 90
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=35.10 E-value=1e+02 Score=24.00 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=9.0
Q ss_pred HHHHHHHhhhHHHHHHHHHH
Q 016378 136 KEVENLKAGKNALTQELLKL 155 (390)
Q Consensus 136 ~EVE~LK~dq~~L~qELv~L 155 (390)
.|+++|.++...+..++.++
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~ 23 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERL 23 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 91
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.79 E-value=99 Score=33.45 Aligned_cols=40 Identities=5% Similarity=0.133 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 146 NALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLS 185 (390)
Q Consensus 146 ~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMls 185 (390)
..|.++|..||++.+.+..+...++++|..+|...+++-.
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3444455555554444445555555555555544444433
No 92
>PF14282 FlxA: FlxA-like protein
Probab=34.59 E-value=2e+02 Score=24.60 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 016378 135 WKEVENLKAGKNALTQELLKLRQY----QETADNKLLLLRDRVQGME 177 (390)
Q Consensus 135 ~~EVE~LK~dq~~L~qELv~LRQq----Qe~le~el~~L~eRLq~mE 177 (390)
...|+.|++.+..|..+|..|... -+.-..++..|...|..++
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~Lq 64 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQ 64 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888887662 1233334444444444444
No 93
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=34.47 E-value=1.4e+02 Score=31.51 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=19.5
Q ss_pred EEEecchhhhhhhccCCcCCCChhhHHh
Q 016378 41 FVIWDVTEFSVQLLPRYFKHSNFSSFIR 68 (390)
Q Consensus 41 FVI~d~~~F~~~VLPkyFKhsnfsSFvR 68 (390)
||+..|.+|+..+=.+|=...|+++.-.
T Consensus 119 ~v~skPrEfA~likNkFGSADNI~sl~~ 146 (395)
T PF10267_consen 119 AVVSKPREFAHLIKNKFGSADNISSLKD 146 (395)
T ss_pred HHHhCcHHHHhcccCCCCCCCccccccc
Confidence 7888999999855444435677776654
No 94
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=33.87 E-value=1.8e+02 Score=28.82 Aligned_cols=60 Identities=25% Similarity=0.261 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016378 133 ALWKEVENLKAGKNALTQELLKLRQYQETADNKL---------LLLRDRVQGMEKSQQQMLSFLVMAMQ 192 (390)
Q Consensus 133 ~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el---------~~L~eRLq~mEq~QqQMlsFLakamq 192 (390)
.+..+++.|+.+...+..++..++.+....+.++ .+|...++..+++...+..-|+.++.
T Consensus 49 ~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~ 117 (239)
T COG1579 49 ALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELME 117 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666666666666666655444333 33444445555555554444444443
No 95
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=33.16 E-value=2.2e+02 Score=25.90 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016378 151 ELLKLRQYQETADNKLLLLR 170 (390)
Q Consensus 151 ELv~LRQqQe~le~el~~L~ 170 (390)
|+++|+|.-.++.|.=++..
T Consensus 48 EVvrlKQrRRTLKNRGYA~s 67 (135)
T KOG4196|consen 48 EVVRLKQRRRTLKNRGYAQS 67 (135)
T ss_pred HHHHHHHHHHHHhhhhHHHH
Confidence 34455555555544444443
No 96
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=33.03 E-value=3.5e+02 Score=23.94 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQ 181 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~Qq 181 (390)
...|..+|.++-.+...+..++.+|..+...+..++..+..+.......-.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~ 68 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKK 68 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888888888888888877766654333
No 97
>PRK00295 hypothetical protein; Provisional
Probab=32.85 E-value=2.5e+02 Score=22.26 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 144 GKNALTQELLKLRQYQETADNKLLLLRDRVQGM 176 (390)
Q Consensus 144 dq~~L~qELv~LRQqQe~le~el~~L~eRLq~m 176 (390)
....|-..+.+..++...+..++..|.+|+..+
T Consensus 20 tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 20 TIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445544555555555666666666543
No 98
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=32.74 E-value=2e+02 Score=30.13 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKL 155 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~L 155 (390)
+..+|..|..+||++++.|..|+.+|
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888777777
No 99
>PRK09039 hypothetical protein; Validated
Probab=32.45 E-value=2.9e+02 Score=28.33 Aligned_cols=36 Identities=14% Similarity=0.053 Sum_probs=13.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 140 NLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 175 (390)
Q Consensus 140 ~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~ 175 (390)
.++........++..|+++.+.+..++..+...|..
T Consensus 127 ~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 127 SEKQVSARALAQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444333333
No 100
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=31.91 E-value=1.8e+02 Score=22.64 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 016378 133 ALWKEVENLKAGKNALTQELLKLRQYQETADNKL 166 (390)
Q Consensus 133 ~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el 166 (390)
.++.++.++....+.+..|...++...+.++..+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555544444
No 101
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.78 E-value=1.6e+02 Score=25.23 Aligned_cols=32 Identities=9% Similarity=-0.010 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 016378 133 ALWKEVENLKAGKNALTQELLKLRQYQETADN 164 (390)
Q Consensus 133 ~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~ 164 (390)
.+..+++.++.+...+.++...|+.+.+.+.+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33444444444444444444444444444433
No 102
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.51 E-value=1.2e+02 Score=29.89 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 134 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDR 172 (390)
Q Consensus 134 L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eR 172 (390)
+-.+=++.|.....|..|+.+++++...+..++..|+.=
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677777777777776666666666666666543
No 103
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=31.39 E-value=3.5e+02 Score=23.44 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 133 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 173 (390)
Q Consensus 133 ~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRL 173 (390)
.|...+..|..+...|..++..|+++...+-.+-..|+--.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN 45 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIEN 45 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555554333
No 104
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=31.08 E-value=3.7e+02 Score=23.70 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 133 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 177 (390)
Q Consensus 133 ~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mE 177 (390)
.+...++.|+.+...+..++.........+..++..+...+....
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444333
No 105
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=30.95 E-value=3.3e+02 Score=25.58 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNK 165 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~e 165 (390)
..+..+|..|+.++..|..++..++.+.+.++..
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666655555554433
No 106
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=30.79 E-value=3.7e+02 Score=23.63 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 176 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~m 176 (390)
.+|..+++..|..+..|.++--.|+.-+..+..+.....+|+...
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eL 63 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAEL 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444443333333333333333333333333
No 107
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.69 E-value=1.2e+02 Score=27.57 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=39.7
Q ss_pred hhhhHHHHHHHHHhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cchhhhhhcc
Q 016378 130 DHSALWKEVENLKAGKNALTQ-----ELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ-NPSFLVQLLQ 202 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~q-----ELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakamq-nP~fl~ql~~ 202 (390)
+...+..|+.+||++.+.+.. .-.+++++...++.++..+.+.+..........+..+..++. -|-++.++..
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTTLPFFVLRFWY 119 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 456777788888887777542 245677777777888888777777666666666554444333 3444444443
No 108
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=30.54 E-value=2.4e+02 Score=21.44 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=17.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 137 EVENLKAGKNALTQELLKLRQYQETADNKLLLLR 170 (390)
Q Consensus 137 EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~ 170 (390)
.++.|......|..+...|+.+...+..++..|.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544444444443
No 109
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.50 E-value=2e+02 Score=22.72 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=16.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 141 LKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 176 (390)
Q Consensus 141 LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~m 176 (390)
+-.....|-..+.+..++...++.++..|.+|++.+
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444544555555555555555555544
No 110
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.91 E-value=2e+02 Score=32.58 Aligned_cols=28 Identities=29% Similarity=0.233 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQY 158 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQq 158 (390)
...|+.||++||.|.....+-=..||++
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4578888888888877665555555555
No 111
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=29.25 E-value=2.6e+02 Score=29.29 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 016378 135 WKEVENLKAGKNALTQELLKLRQYQETADNKLLL--LRDRVQGMEK 178 (390)
Q Consensus 135 ~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~--L~eRLq~mEq 178 (390)
..|.-.||.++..|.+|...|+.+.+.+++++.. +.+|.+-++.
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv 76 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDV 76 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 3567788888888888888888888888777764 5566655544
No 112
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=29.03 E-value=1.2e+02 Score=21.29 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLR 156 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LR 156 (390)
..|..|.+.|++....|..-|..||
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777766666555543
No 113
>smart00338 BRLZ basic region leucin zipper.
Probab=28.88 E-value=2.2e+02 Score=21.65 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=19.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 137 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRD 171 (390)
Q Consensus 137 EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~e 171 (390)
.+..|......|..+...|+.+...+..++..|..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555554443
No 114
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=28.64 E-value=30 Score=30.02 Aligned_cols=39 Identities=28% Similarity=0.309 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLR 170 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~ 170 (390)
..|..++..++..+..|.++|..+..+|..++.-|..++
T Consensus 60 ~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE 98 (116)
T PF05064_consen 60 SKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLE 98 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554444443333
No 115
>PRK00846 hypothetical protein; Provisional
Probab=28.60 E-value=3e+02 Score=22.70 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 145 KNALTQELLKLRQYQETADNKLLLLRDRVQGM 176 (390)
Q Consensus 145 q~~L~qELv~LRQqQe~le~el~~L~eRLq~m 176 (390)
...|-+.+.+..+....+..++..|.+|++.+
T Consensus 29 Ie~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 29 LTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444455555555555566666554
No 116
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=28.38 E-value=3.2e+02 Score=28.04 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=37.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 139 ENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMA 190 (390)
Q Consensus 139 E~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLaka 190 (390)
.+.+.++..|..+++.+.+..+..-.+...|.++|..+...|+++.+=|.-+
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~el 281 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQEL 281 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777778888888888888776665543
No 117
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.38 E-value=2.8e+02 Score=30.64 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh--cCchhhh
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQE-------TADNKLLLLRDRVQGMEKSQ----QQMLSFLVMAM--QNPSFLV 198 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe-------~le~el~~L~eRLq~mEq~Q----qQMlsFLakam--qnP~fl~ 198 (390)
..+..|+..||.++..|..+|.++|.+.. ...++++.|.++|..+.+.- .+...+.+.-+ .++.++.
T Consensus 165 ~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~ 244 (546)
T KOG0977|consen 165 KALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFK 244 (546)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHH
Confidence 44445555555555555555555554332 23455566666666665322 22334444444 4455555
Q ss_pred hhc
Q 016378 199 QLL 201 (390)
Q Consensus 199 ql~ 201 (390)
.=+
T Consensus 245 ~eL 247 (546)
T KOG0977|consen 245 NEL 247 (546)
T ss_pred HHH
Confidence 443
No 118
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=28.37 E-value=2.5e+02 Score=24.42 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 184 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMl 184 (390)
...|...|.++-.-..+|..--.+==|..+.++..|..|+.+++..|...+.++
T Consensus 42 lrqllekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l~ 95 (101)
T PF12308_consen 42 LRQLLEKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVEDDRKSLS 95 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCHHHhh
Confidence 345666677766666666554444445668889999999999998887777665
No 119
>PRK04325 hypothetical protein; Provisional
Probab=28.36 E-value=2.8e+02 Score=22.32 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 145 KNALTQELLKLRQYQETADNKLLLLRDRVQ 174 (390)
Q Consensus 145 q~~L~qELv~LRQqQe~le~el~~L~eRLq 174 (390)
...|-..+.+..++...+..++..|.+|+.
T Consensus 25 Ie~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 25 IDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555544
No 120
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.22 E-value=2.1e+02 Score=23.97 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=31.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 137 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 176 (390)
Q Consensus 137 EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~m 176 (390)
-+..|...+..+..++-++..+...+..++..++.+|..+
T Consensus 64 a~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 64 ARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888888888888888888755
No 121
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=28.22 E-value=2.5e+02 Score=30.44 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=40.4
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 189 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLak 189 (390)
....|..++.+|.+++..+.+.+. ..++.++.+...|...+..|...+..+.+||..
T Consensus 423 ~~~~l~~~i~~l~~~i~~~~~rl~---~~e~~~~~qf~~m~~~~~~m~sq~~~L~q~l~~ 479 (483)
T COG1345 423 RTDSLNKQIKSLDKDIKSLDKRLE---AAEERYKTQFNTLDDMMTQMNSQSSYLTQQLVS 479 (483)
T ss_pred cccchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677788888888888877444 445566677777777777777777777777654
No 122
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.02 E-value=3.9e+02 Score=27.08 Aligned_cols=9 Identities=22% Similarity=0.445 Sum_probs=3.0
Q ss_pred cccccCHHH
Q 016378 267 KDVFMNIDF 275 (390)
Q Consensus 267 ~d~~~~~~~ 275 (390)
+.+|.+..|
T Consensus 230 ~~~f~~~~F 238 (314)
T PF04111_consen 230 GRLFSSRKF 238 (314)
T ss_dssp -GGG--SHH
T ss_pred hhhhhhcch
Confidence 455555443
No 123
>PRK00736 hypothetical protein; Provisional
Probab=27.91 E-value=3.1e+02 Score=21.75 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 144 GKNALTQELLKLRQYQETADNKLLLLRDRVQG 175 (390)
Q Consensus 144 dq~~L~qELv~LRQqQe~le~el~~L~eRLq~ 175 (390)
....|-..+.+..++...+..++..|.+|+..
T Consensus 20 tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 20 TIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555566666544
No 124
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.79 E-value=3.8e+02 Score=24.87 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 145 KNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 189 (390)
Q Consensus 145 q~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLak 189 (390)
...|..-|..|.+|++ ...++..|++.+...+.+.+.++.-|..
T Consensus 11 d~~L~~~L~~l~~hq~-~~~~I~~L~~e~~~ld~~i~~~~~~L~~ 54 (188)
T PF10018_consen 11 DDELSSALEELQEHQE-NQARIQQLRAEIEELDEQIRDILKQLKE 54 (188)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333 3555555555555555555555544443
No 125
>PRK04406 hypothetical protein; Provisional
Probab=27.72 E-value=2.9e+02 Score=22.46 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 150 QELLKLRQYQETADNKLLLLRDRVQ 174 (390)
Q Consensus 150 qELv~LRQqQe~le~el~~L~eRLq 174 (390)
..+.+..++...+..++..|.+|+.
T Consensus 32 ~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 32 DALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444443
No 126
>PRK10698 phage shock protein PspA; Provisional
Probab=27.43 E-value=3.1e+02 Score=26.34 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 177 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mE 177 (390)
..|..+++..+.....|...+.+|+..++.+..+-..|..|.+..+
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555555443
No 127
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.62 E-value=4.5e+02 Score=23.64 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETA 162 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~l 162 (390)
.....||.+|......|..+|-++......+
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666655555444433
No 128
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.45 E-value=2.8e+02 Score=30.09 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 173 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRL 173 (390)
...|+++++.||.+...+.+....+.++.+.++.++..|+.++
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444544444444444444444444444
No 129
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=26.36 E-value=2.4e+02 Score=25.05 Aligned_cols=31 Identities=23% Similarity=0.140 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 145 KNALTQELLKLRQYQETADNKLLLLRDRVQG 175 (390)
Q Consensus 145 q~~L~qELv~LRQqQe~le~el~~L~eRLq~ 175 (390)
...|.+-+..|-.++-.+.-+...|++||..
T Consensus 24 l~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 24 LGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3333333333333344444455556666654
No 130
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.31 E-value=5.7e+02 Score=24.30 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=8.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Q 016378 137 EVENLKAGKNALTQELLKLRQYQ 159 (390)
Q Consensus 137 EVE~LK~dq~~L~qELv~LRQqQ 159 (390)
+++.++.....|..++.+++++.
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i 86 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRI 86 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 131
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.76 E-value=3.4e+02 Score=21.75 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 146 NALTQELLKLRQYQETADNKLLLLRDRVQG 175 (390)
Q Consensus 146 ~~L~qELv~LRQqQe~le~el~~L~eRLq~ 175 (390)
..|-..+.+..++...+..++..|.+|+..
T Consensus 25 e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 25 EELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444455555555543
No 132
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.67 E-value=4.3e+02 Score=29.26 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=14.3
Q ss_pred HHhhhhccchhhhhhcchhHHHHHHHHHhhh
Q 016378 354 QELDKSQNFDNELENARHLEFLTQKIELLAS 384 (390)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
-+|||.+-.+..-|=.+..+-|.+.++-+|+
T Consensus 429 ~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~ 459 (546)
T PF07888_consen 429 AQKEKEQLQEEKQELLEYIERLEQRLDKVAD 459 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444444444444455555444
No 133
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=25.65 E-value=2.4e+02 Score=29.88 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ 182 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQ 182 (390)
...++.|+.++.+...|..|+.++...+..+..++..|++-+.++|...|.
T Consensus 241 aqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 241 AQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 345556888999999999999999999999999999999999999866553
No 134
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.48 E-value=2.5e+02 Score=27.92 Aligned_cols=25 Identities=44% Similarity=0.453 Sum_probs=13.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q 016378 137 EVENLKAGKNALTQELLKLRQYQET 161 (390)
Q Consensus 137 EVE~LK~dq~~L~qELv~LRQqQe~ 161 (390)
++.+|+.++..|.+|+..++++++.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666665555444443
No 135
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=25.32 E-value=1.6e+02 Score=29.02 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016378 158 YQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ 192 (390)
Q Consensus 158 qQe~le~el~~L~eRLq~mEq~QqQMlsFLakamq 192 (390)
+.+.++.+....+.+|+.++++++.|..|++++-+
T Consensus 30 ~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 30 LLEEIRKKQQKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666788888889999999999988655
No 136
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=25.28 E-value=4.6e+02 Score=22.92 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 134 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLR 170 (390)
Q Consensus 134 L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~ 170 (390)
|...+..|......|..++..|+++...+-.+-..|+
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~ 42 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALR 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 137
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=25.14 E-value=3.3e+02 Score=26.10 Aligned_cols=29 Identities=14% Similarity=0.367 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 160 ETADNKLLLLRDRVQGMEKSQQQMLSFLV 188 (390)
Q Consensus 160 e~le~el~~L~eRLq~mEq~QqQMlsFLa 188 (390)
-++...+..|++||...+.+-.+|+..|-
T Consensus 110 ~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 110 PALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677777777777777777776665
No 138
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=25.12 E-value=68 Score=33.63 Aligned_cols=77 Identities=17% Similarity=0.323 Sum_probs=46.0
Q ss_pred cHHHHHHhhccCCCCCCc----eEEcCCCCeEEEecchhhhhhhcc----------------CCcCCCChhhHHhhhccc
Q 016378 14 PFLNKCYEMVDDESTDSI----ISWGQSNESFVIWDVTEFSVQLLP----------------RYFKHSNFSSFIRQLNIY 73 (390)
Q Consensus 14 ~Fl~KLy~mVed~~~~~I----IsWs~~G~sFVI~d~~~F~~~VLP----------------kyFKhsnfsSFvRQLN~Y 73 (390)
-|.-|-|.++..-..+.+ |.|+|||+..+|||...=.+ |+- +|-.-..|.--+|-||..
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-eeeeeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence 355666888775444432 89999999999998654332 221 222223455556666665
Q ss_pred ceeeecCCCceeecCCcccCcc
Q 016378 74 GFRKIDTDRWEFANDGFVRDQK 95 (390)
Q Consensus 74 GFrKv~~d~weF~H~~F~Rg~~ 95 (390)
-++- --+|-|..-.++-.
T Consensus 241 tWk~----f~eflhl~s~~dp~ 258 (447)
T KOG4497|consen 241 TWKP----FGEFLHLCSYHDPT 258 (447)
T ss_pred eeee----hhhhccchhccCch
Confidence 4433 23677776666554
No 139
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.54 E-value=5.7e+02 Score=23.70 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKS 179 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~ 179 (390)
..+..++..|+.....|..++.....-.+.+..++.+|.-.+-.+|.+
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444333333333
No 140
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.52 E-value=4.1e+02 Score=21.99 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 143 AGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 177 (390)
Q Consensus 143 ~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mE 177 (390)
..+..|+-|+..|+..+.++.++.+.+++...+.+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 33445555555555555555555554444444443
No 141
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.16 E-value=6.1e+02 Score=24.78 Aligned_cols=41 Identities=24% Similarity=0.218 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRD 171 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~e 171 (390)
...+.+|++.|..++.....||....+...+++..+...+.
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~ 74 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAES 74 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777777777655553
No 142
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.05 E-value=3.9e+02 Score=28.22 Aligned_cols=55 Identities=9% Similarity=0.180 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhcCchhhhhh
Q 016378 146 NALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ------MLSFLVMAMQNPSFLVQL 200 (390)
Q Consensus 146 ~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQ------MlsFLakamqnP~fl~ql 200 (390)
..|..++.+|.........++..+.+++..+...+.. ...++...+.++|+-.++
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~~i 421 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKASI 421 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3333334444333333334444444444444333322 234555555666655433
No 143
>PRK14127 cell division protein GpsB; Provisional
Probab=23.93 E-value=2.2e+02 Score=24.90 Aligned_cols=50 Identities=22% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETAD-------------NKLLLLRDRVQGMEKS 179 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le-------------~el~~L~eRLq~mEq~ 179 (390)
+...+..|+..|+.+...|..++..++.+..... .-...+-.||-.+|+.
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~ 100 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKH 100 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHH
No 144
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=23.49 E-value=4.3e+02 Score=21.93 Aligned_cols=48 Identities=19% Similarity=0.347 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016378 145 KNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ 192 (390)
Q Consensus 145 q~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakamq 192 (390)
+..|.+++..|+.-...++.++...+......+..=+-+...+.-+|.
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777766666666666666665555433333344444444
No 145
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=23.44 E-value=5.8e+02 Score=24.89 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=15.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 142 KAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQ 180 (390)
Q Consensus 142 K~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~Q 180 (390)
+.+...+...+..|+.+...+..+...|..++..++...
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 333333333333333333333344444444444444333
No 146
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=23.44 E-value=1.2e+02 Score=31.23 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=12.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 133 ALWKEVENLKAGKNALTQELLKLRQYQE----TADNKLLLLRDRVQGMEKSQQQML 184 (390)
Q Consensus 133 ~L~~EVE~LK~dq~~L~qELv~LRQqQe----~le~el~~L~eRLq~mEq~QqQMl 184 (390)
.|..|++.+|+.+.....++..+..... .+...+..+++|+..+|.+...|-
T Consensus 109 elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~ 164 (370)
T PF02994_consen 109 ELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIE 164 (370)
T ss_dssp ---------H-------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 4666777777766555555554443332 334555555555555555555443
No 147
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=23.36 E-value=5e+02 Score=27.50 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ 192 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakamq 192 (390)
...+..|...+..+...+...+..|....+.+.+++..+.+|++..-+++-+|+.-....+.
T Consensus 325 t~~~nae~a~~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~me~ifamLqavgdtlh 386 (400)
T COG5613 325 TTALNAEAAQLQADSQLAAADVQNLQRIIERLKEELKLELEKAQEEMENIFAMLQAVGDTLH 386 (400)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666677766667777777777777777777777777766666666654444333
No 148
>PRK02119 hypothetical protein; Provisional
Probab=23.34 E-value=4e+02 Score=21.46 Aligned_cols=19 Identities=5% Similarity=0.184 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016378 156 RQYQETADNKLLLLRDRVQ 174 (390)
Q Consensus 156 RQqQe~le~el~~L~eRLq 174 (390)
.++...+..++..|.+|+.
T Consensus 36 q~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 36 QFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443
No 149
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=23.29 E-value=4.4e+02 Score=26.72 Aligned_cols=42 Identities=29% Similarity=0.397 Sum_probs=32.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 016378 138 VENLKAGKNALTQELLKLRQYQETADNKL--------LLLRDRVQGMEKS 179 (390)
Q Consensus 138 VE~LK~dq~~L~qELv~LRQqQe~le~el--------~~L~eRLq~mEq~ 179 (390)
+..|...+.+|..|+.+|.+..+.++.+| +.+-.|+++...-
T Consensus 6 L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RVqGFkdY 55 (283)
T PF11285_consen 6 LKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRVQGFKDY 55 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHhhhHHH
Confidence 45677788888888888888888888887 4566788777543
No 150
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=23.17 E-value=5.1e+02 Score=28.69 Aligned_cols=7 Identities=43% Similarity=0.818 Sum_probs=2.8
Q ss_pred hhhhhcc
Q 016378 49 FSVQLLP 55 (390)
Q Consensus 49 F~~~VLP 55 (390)
|...-||
T Consensus 77 F~ayyLP 83 (546)
T PF07888_consen 77 FQAYYLP 83 (546)
T ss_pred ECcccCC
Confidence 3333444
No 151
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.01 E-value=5.7e+02 Score=23.15 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=5.9
Q ss_pred HHHhhhHHHHHHHHHH
Q 016378 140 NLKAGKNALTQELLKL 155 (390)
Q Consensus 140 ~LK~dq~~L~qELv~L 155 (390)
.++.....+.+|+..+
T Consensus 134 ~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 134 SLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 152
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.00 E-value=3.9e+02 Score=29.05 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=34.5
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 175 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~ 175 (390)
....|..++..++++...|..+-.+|+.+++.+..+-..+.+|++.
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3567777888888888888888888888888777777666666553
No 153
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.76 E-value=4.8e+02 Score=22.20 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 149 TQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ 182 (390)
Q Consensus 149 ~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQ 182 (390)
.+++.+|+-....+..++..++.+++++.+...-
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555666666666666544433
No 154
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=22.01 E-value=2.8e+02 Score=22.19 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016378 148 LTQELLKLRQYQETADNKLLLLR 170 (390)
Q Consensus 148 L~qELv~LRQqQe~le~el~~L~ 170 (390)
+...+.+|||+....+.-+.+|.
T Consensus 9 irl~~arLrqeH~D~DaaInAmi 31 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMI 31 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 44455555665555555555444
No 155
>PRK14153 heat shock protein GrpE; Provisional
Probab=21.99 E-value=5.5e+02 Score=24.57 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=22.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 137 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 174 (390)
Q Consensus 137 EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq 174 (390)
+++.+..+...|..++..++.++..+..+..+.+.|..
T Consensus 34 ~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 34 EDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566666665555555556666666655
No 156
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=21.91 E-value=3.9e+02 Score=29.58 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 174 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq 174 (390)
...+..|+..+|+.+..|..|+.+|+.++..++.++..++..++
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 46678899999999999999999999999999999998886443
No 157
>PF15456 Uds1: Up-regulated During Septation
Probab=21.56 E-value=3.4e+02 Score=24.07 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 135 WKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 176 (390)
Q Consensus 135 ~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~m 176 (390)
..||+.||++...|..-+..+|.... ++.++...-.++...
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
No 158
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=21.49 E-value=1.7e+02 Score=24.28 Aligned_cols=19 Identities=32% Similarity=0.256 Sum_probs=7.8
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 016378 135 WKEVENLKAGKNALTQELL 153 (390)
Q Consensus 135 ~~EVE~LK~dq~~L~qELv 153 (390)
..|..+||++...|..||+
T Consensus 6 ~eEn~~Lk~eiqkle~ELq 24 (76)
T PF07334_consen 6 QEENARLKEEIQKLEAELQ 24 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 159
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.43 E-value=2e+02 Score=28.26 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=18.7
Q ss_pred ceeecCCcccCcccccccccccC
Q 016378 83 WEFANDGFVRDQKHLLNNICRRK 105 (390)
Q Consensus 83 weF~H~~F~Rg~~~LL~~IkRkk 105 (390)
|=+.||.|.+-+++|+..|.=..
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph 34 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPH 34 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCC
Confidence 44579999999999999886543
No 160
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.29 E-value=6.6e+02 Score=23.26 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 178 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq 178 (390)
...|..++..|..+......-+..++.+..++.-++..++++++.++.
T Consensus 125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444443
No 161
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=21.28 E-value=4.2e+02 Score=22.08 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cchhhhhhccc
Q 016378 150 QELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ-NPSFLVQLLQP 203 (390)
Q Consensus 150 qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakamq-nP~fl~ql~~~ 203 (390)
.|+.+.+........++..|..+...+|.. +|+.. +++|. +|.=|..|++.
T Consensus 8 ~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~--EIv~~-VR~~~mtp~eL~~~L~~ 59 (83)
T PF14193_consen 8 AEIEKTKEKIAELQARLKELEAQKTEAENL--EIVQM-VRSMKMTPEELAAFLRA 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHcCCCHHHHHHHHHH
Confidence 333333333333333444444444433321 23332 23344 66666666543
No 162
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=20.99 E-value=4.8e+02 Score=21.54 Aligned_cols=52 Identities=10% Similarity=0.184 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 134 LWKEVENLKAGKNALTQELLKLRQYQET---ADNKLLLLRDRVQGMEKSQQQMLS 185 (390)
Q Consensus 134 L~~EVE~LK~dq~~L~qELv~LRQqQe~---le~el~~L~eRLq~mEq~QqQMls 185 (390)
+...|..+-..-.+|++.+..++..... +..++.++..+|...+.+-..+.+
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444433 555555566666555554444433
No 163
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.98 E-value=4.5e+02 Score=31.39 Aligned_cols=58 Identities=24% Similarity=0.242 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 130 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFL 187 (390)
Q Consensus 130 e~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFL 187 (390)
+...|.-|++.|+.++....+++..+..++..+..++..|...+...+..+.+.++-|
T Consensus 816 e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el 873 (1174)
T KOG0933|consen 816 EYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAEL 873 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence 4567777888888888888888888888888888888888888888777666655444
No 164
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.87 E-value=4.4e+02 Score=31.92 Aligned_cols=47 Identities=30% Similarity=0.344 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 177 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mE 177 (390)
...+..++.++|.+......++.++++....+..++..+++|+..+.
T Consensus 544 l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 544 LDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777778888888888888888888888888888887654
No 165
>PRK07857 hypothetical protein; Provisional
Probab=20.87 E-value=4.2e+02 Score=23.12 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=38.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCchh
Q 016378 136 KEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ---GMEKSQQQMLSFLVMAMQNPSF 196 (390)
Q Consensus 136 ~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq---~mEq~QqQMlsFLakamqnP~f 196 (390)
..++.|+.++..|-.||++|-.+-..+-.++...+.... -...+-++++.-+...+..+|-
T Consensus 28 ~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~g~pI~dp~RE~eVl~rl~~~lg~~g~ 91 (106)
T PRK07857 28 AEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMASGGTRLVHSREMKVIERYREELGPEGK 91 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHHHHHHhCCccH
Confidence 356777888888888888876666666666666654332 1234455666666666666554
No 166
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.79 E-value=7.2e+02 Score=24.92 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQM 183 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQM 183 (390)
..|..-.+.+|.....+..|-..|+.+++.++.++..+++|+...+..-.++
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666667777777777777788888888888888777544443
No 167
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=20.77 E-value=3.3e+02 Score=24.26 Aligned_cols=10 Identities=30% Similarity=0.375 Sum_probs=3.7
Q ss_pred HHhhhHHHHH
Q 016378 141 LKAGKNALTQ 150 (390)
Q Consensus 141 LK~dq~~L~q 150 (390)
|+.....|..
T Consensus 75 L~er~E~Le~ 84 (119)
T COG1382 75 LEERKETLEL 84 (119)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 168
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=20.50 E-value=4.3e+02 Score=25.31 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 134 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 177 (390)
Q Consensus 134 L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mE 177 (390)
+..+++........+..+|..........+.++..|.+|++.+|
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE 49 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLE 49 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555444444444455555555555554444
No 169
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.43 E-value=4.2e+02 Score=23.69 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLS 185 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq~mEq~QqQMls 185 (390)
......++.|+.+.......+.+-....+.++..+..+...+...+.+-+.++.
T Consensus 37 ~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~ 90 (160)
T PF13094_consen 37 AANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQ 90 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhc
No 170
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=20.28 E-value=5.1e+02 Score=29.04 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhcccc
Q 016378 154 KLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPK 204 (390)
Q Consensus 154 ~LRQqQe~le~el~~L~eRLq~mEq~QqQMlsFLakamqnP~fl~ql~~~k 204 (390)
.++.++..+..++..++.++..+-..++++...-..+=-+......|+++.
T Consensus 343 ~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~ 393 (726)
T PRK09841 343 ALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQ 393 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666655554444433455555666543
No 171
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.26 E-value=2.5e+02 Score=31.64 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHH
Q 016378 132 SALWKEVENLKAGKNALTQELL 153 (390)
Q Consensus 132 ~~L~~EVE~LK~dq~~L~qELv 153 (390)
..|..||+.+...+..|++++.
T Consensus 103 qel~seI~~~n~kiEelk~~i~ 124 (907)
T KOG2264|consen 103 QELNSEIEEINTKIEELKRLIP 124 (907)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 172
>PF14282 FlxA: FlxA-like protein
Probab=20.19 E-value=5.2e+02 Score=21.99 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=35.6
Q ss_pred hhhhhHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 129 IDHSALWKEVENLKAGKNALTQE----LLKLRQYQETADNKLLLLRDRVQGMEKS 179 (390)
Q Consensus 129 ~e~~~L~~EVE~LK~dq~~L~qE----Lv~LRQqQe~le~el~~L~eRLq~mEq~ 179 (390)
.....|...|..|..+...|... --.-.++.+.+..++..|...|......
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888887771 1233566677888888888888755433
No 173
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.17 E-value=7.9e+02 Score=23.72 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 131 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 174 (390)
Q Consensus 131 ~~~L~~EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq 174 (390)
..+|..+-..+.+++..|..++..|..++..+..+..-+..|..
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~ 126 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSK 126 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHH
Confidence 34444444455555555555555555555444444444444433
No 174
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.10 E-value=3.6e+02 Score=22.79 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=18.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 138 VENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 174 (390)
Q Consensus 138 VE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq 174 (390)
+..|+.....+...+..+..+...+..++..++.+++
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444444444444444443
No 175
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.09 E-value=3.7e+02 Score=21.67 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=25.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016378 137 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 174 (390)
Q Consensus 137 EVE~LK~dq~~L~qELv~LRQqQe~le~el~~L~eRLq 174 (390)
-++.|+.+...+..++-+|+.....+..++..+...|.
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777666666666666665554
Done!