Query 016379
Match_columns 390
No_of_seqs 254 out of 1666
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 12:36:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w7n_A TRFB transcriptional re 95.7 0.014 4.7E-07 44.9 4.9 60 48-118 4-63 (101)
2 1jhg_A Trp operon repressor; c 95.2 0.0083 2.8E-07 46.1 2.1 46 72-118 35-86 (101)
3 2o8x_A Probable RNA polymerase 95.1 0.039 1.3E-06 38.8 5.5 47 72-119 15-61 (70)
4 1tc3_C Protein (TC3 transposas 95.1 0.017 5.7E-07 37.4 3.3 40 72-112 5-44 (51)
5 2glo_A Brinker CG9653-PA; prot 94.7 0.039 1.3E-06 37.8 4.3 45 71-116 4-52 (59)
6 2jn6_A Protein CGL2762, transp 94.3 0.042 1.4E-06 41.7 4.3 43 71-113 4-47 (97)
7 1tty_A Sigma-A, RNA polymerase 94.2 0.063 2.1E-06 39.9 4.9 47 72-118 18-67 (87)
8 3hug_A RNA polymerase sigma fa 94.2 0.065 2.2E-06 40.2 5.0 49 72-121 37-85 (92)
9 2p7v_B Sigma-70, RNA polymeras 94.1 0.049 1.7E-06 38.3 4.0 47 72-118 5-54 (68)
10 1ku3_A Sigma factor SIGA; heli 94.0 0.074 2.5E-06 38.0 4.9 48 71-118 9-59 (73)
11 1jko_C HIN recombinase, DNA-in 92.7 0.042 1.4E-06 35.8 1.5 28 85-112 17-44 (52)
12 3t72_q RNA polymerase sigma fa 92.6 0.14 4.9E-06 39.1 4.6 48 72-119 19-69 (99)
13 1fse_A GERE; helix-turn-helix 92.3 0.18 6.3E-06 35.6 4.8 46 71-118 10-55 (74)
14 2jrt_A Uncharacterized protein 92.3 0.13 4.6E-06 38.9 4.1 44 70-113 30-73 (95)
15 2elh_A CG11849-PA, LD40883P; s 92.3 0.12 4.3E-06 38.3 3.9 45 71-116 21-65 (87)
16 1p4w_A RCSB; solution structur 92.2 0.25 8.7E-06 37.7 5.6 62 53-118 17-78 (99)
17 3c57_A Two component transcrip 91.8 0.19 6.6E-06 37.9 4.5 45 72-118 27-71 (95)
18 1je8_A Nitrate/nitrite respons 91.7 0.15 5.3E-06 37.3 3.7 46 71-118 20-65 (82)
19 1s7o_A Hypothetical UPF0122 pr 91.5 0.23 7.8E-06 38.9 4.8 47 73-120 23-69 (113)
20 2x48_A CAG38821; archeal virus 91.5 0.11 3.8E-06 34.6 2.6 27 86-112 28-54 (55)
21 1wy3_A Villin; structural prot 91.1 0.1 3.4E-06 31.7 1.7 19 39-57 2-20 (35)
22 1xsv_A Hypothetical UPF0122 pr 91.1 0.29 9.9E-06 38.3 5.0 47 73-120 26-72 (113)
23 2jpc_A SSRB; DNA binding prote 90.9 0.15 5.2E-06 34.7 2.8 33 86-118 10-42 (61)
24 1pdn_C Protein (PRD paired); p 90.3 0.3 1E-05 38.2 4.6 44 71-115 16-59 (128)
25 1und_A Advillin, P92; actin bi 90.2 0.13 4.5E-06 31.6 1.7 20 38-57 3-22 (37)
26 1k78_A Paired box protein PAX5 90.2 0.29 9.9E-06 39.9 4.5 44 71-115 31-74 (149)
27 2rn7_A IS629 ORFA; helix, all 89.9 0.19 6.5E-06 38.7 3.0 44 71-114 5-55 (108)
28 1or7_A Sigma-24, RNA polymeras 89.8 0.4 1.4E-05 40.6 5.3 52 72-124 140-191 (194)
29 1x3u_A Transcriptional regulat 89.8 0.27 9.1E-06 35.3 3.6 44 73-118 17-60 (79)
30 3ulq_B Transcriptional regulat 89.5 0.38 1.3E-05 35.9 4.2 45 71-117 28-72 (90)
31 2rnj_A Response regulator prot 89.2 0.24 8.1E-06 36.9 2.9 44 72-117 29-72 (91)
32 1rp3_A RNA polymerase sigma fa 88.7 0.52 1.8E-05 41.2 5.3 50 71-121 186-235 (239)
33 1u78_A TC3 transposase, transp 88.7 0.28 9.5E-06 39.3 3.2 42 71-113 5-46 (141)
34 1hlv_A CENP-B, major centromer 88.3 0.48 1.6E-05 37.6 4.4 48 70-117 5-53 (131)
35 2lfw_A PHYR sigma-like domain; 87.5 0.62 2.1E-05 38.3 4.8 50 71-121 92-141 (157)
36 3frw_A Putative Trp repressor 87.1 0.53 1.8E-05 36.2 3.7 30 84-113 53-82 (107)
37 1iuf_A Centromere ABP1 protein 86.9 0.46 1.6E-05 38.8 3.5 47 69-115 8-62 (144)
38 3mzy_A RNA polymerase sigma-H 85.7 0.79 2.7E-05 37.3 4.5 49 72-122 109-157 (164)
39 2q1z_A RPOE, ECF SIGE; ECF sig 85.7 0.64 2.2E-05 38.9 4.0 47 72-119 135-181 (184)
40 2k27_A Paired box protein PAX- 85.4 0.42 1.4E-05 39.5 2.6 41 71-112 24-64 (159)
41 1u78_A TC3 transposase, transp 84.9 2.7 9.2E-05 33.3 7.3 75 38-112 23-102 (141)
42 1j1v_A Chromosomal replication 84.5 0.87 3E-05 34.3 3.7 48 71-118 28-76 (94)
43 3kor_A Possible Trp repressor; 83.5 0.47 1.6E-05 37.3 1.9 33 80-112 66-98 (119)
44 1qzp_A Dematin; villin headpie 83.2 0.55 1.9E-05 33.1 1.9 22 36-57 32-53 (68)
45 1zyb_A Transcription regulator 83.0 1.7 5.9E-05 37.7 5.7 79 37-115 121-212 (232)
46 1qgp_A Protein (double strande 82.9 1.2 4.1E-05 32.1 3.8 40 76-115 16-57 (77)
47 2d1h_A ST1889, 109AA long hypo 82.9 1.3 4.5E-05 33.2 4.3 29 87-115 34-62 (109)
48 2lkp_A Transcriptional regulat 82.5 1.2 4.3E-05 34.5 4.1 28 88-115 44-71 (119)
49 2oa4_A SIR5; structure, struct 82.4 1.6 5.3E-05 33.3 4.4 46 70-115 31-76 (101)
50 2heo_A Z-DNA binding protein 1 82.3 1.3 4.6E-05 30.8 3.8 40 76-115 12-51 (67)
51 1zx4_A P1 PARB, plasmid partit 82.2 1.1 3.7E-05 38.5 3.8 43 70-112 5-47 (192)
52 1oyi_A Double-stranded RNA-bin 82.0 1.1 3.7E-05 32.9 3.2 41 73-115 16-56 (82)
53 1r1u_A CZRA, repressor protein 81.3 2.1 7.3E-05 32.5 5.0 29 87-115 37-65 (106)
54 3la7_A Global nitrogen regulat 81.3 0.66 2.3E-05 40.9 2.3 77 39-115 124-219 (243)
55 2jt1_A PEFI protein; solution 80.8 1.8 6.2E-05 31.2 4.0 29 87-115 22-50 (77)
56 3r0a_A Putative transcriptiona 80.3 1.6 5.3E-05 34.4 4.0 39 77-115 29-68 (123)
57 1yu8_X Villin; alpha helix, 3- 80.2 0.59 2E-05 32.7 1.2 21 37-57 32-52 (67)
58 2qvo_A Uncharacterized protein 80.0 1.3 4.3E-05 33.1 3.2 26 90-115 31-56 (95)
59 1uxc_A FRUR (1-57), fructose r 79.5 0.74 2.5E-05 32.1 1.5 21 91-111 2-22 (65)
60 2k6m_S Supervillin; SVHP, HP, 78.9 0.6 2E-05 32.8 0.9 21 37-57 32-52 (67)
61 1qbj_A Protein (double-strande 78.4 2.3 8E-05 30.9 4.1 40 76-115 12-53 (81)
62 3pvv_A Chromosomal replication 78.4 2.2 7.4E-05 32.6 4.0 47 72-118 33-79 (101)
63 3dv8_A Transcriptional regulat 77.5 1.6 5.5E-05 37.3 3.5 44 72-115 145-195 (220)
64 3ech_A MEXR, multidrug resista 77.2 3 0.0001 33.1 4.8 43 72-115 34-77 (142)
65 1ku9_A Hypothetical protein MJ 77.2 2.1 7.3E-05 34.1 4.0 43 73-115 24-67 (152)
66 3ryp_A Catabolite gene activat 76.7 2.1 7.3E-05 36.2 4.1 44 72-115 137-193 (210)
67 2x4h_A Hypothetical protein SS 76.0 2.5 8.5E-05 33.6 4.1 39 77-115 16-57 (139)
68 3szt_A QCSR, quorum-sensing co 76.0 2.8 9.6E-05 37.0 4.8 46 70-117 173-218 (237)
69 3qp6_A CVIR transcriptional re 75.9 5.5 0.00019 35.8 6.8 46 71-118 196-241 (265)
70 2l8n_A Transcriptional repress 75.7 0.93 3.2E-05 31.8 1.2 22 90-111 10-31 (67)
71 2ao9_A Phage protein; structur 75.5 2.5 8.7E-05 34.8 3.9 40 72-111 23-70 (155)
72 2gxg_A 146AA long hypothetical 75.2 3.3 0.00011 32.8 4.6 42 72-115 34-76 (146)
73 3deu_A Transcriptional regulat 75.1 3 0.0001 34.4 4.4 44 72-115 50-94 (166)
74 1sfx_A Conserved hypothetical 74.9 3.1 0.00011 31.0 4.2 38 77-115 23-60 (109)
75 2cob_A LCOR protein; MLR2, KIA 74.9 2.4 8.1E-05 29.8 3.0 40 73-112 13-53 (70)
76 1zs4_A Regulatory protein CII; 74.9 2.3 7.9E-05 31.1 3.1 40 80-120 16-59 (83)
77 4aik_A Transcriptional regulat 74.7 2.8 9.6E-05 34.1 4.1 44 72-115 28-72 (151)
78 1l0o_C Sigma factor; bergerat 74.5 0.63 2.1E-05 40.7 0.0 45 72-117 198-242 (243)
79 2oz6_A Virulence factor regula 74.5 2.6 9E-05 35.5 4.0 44 72-115 134-190 (207)
80 1y0u_A Arsenical resistance op 74.5 1.9 6.3E-05 32.1 2.7 29 87-115 41-69 (96)
81 3clo_A Transcriptional regulat 74.3 2.6 8.8E-05 37.7 4.1 46 71-118 196-241 (258)
82 3iwz_A CAP-like, catabolite ac 74.2 3.8 0.00013 35.1 5.1 44 72-115 157-213 (230)
83 1p6r_A Penicillinase repressor 74.2 3 0.0001 29.9 3.7 43 72-115 6-53 (82)
84 2l1p_A DNA-binding protein SAT 74.1 2 6.9E-05 31.2 2.6 23 89-111 32-54 (83)
85 3cuo_A Uncharacterized HTH-typ 73.8 2.4 8.3E-05 31.3 3.3 27 89-115 38-64 (99)
86 1r1t_A Transcriptional repress 73.8 4.5 0.00016 31.6 5.0 28 88-115 58-85 (122)
87 3e6c_C CPRK, cyclic nucleotide 73.7 1.7 5.9E-05 38.2 2.8 46 71-116 145-204 (250)
88 3fx3_A Cyclic nucleotide-bindi 73.7 5.1 0.00017 34.6 5.8 45 71-115 150-204 (237)
89 2htj_A P fimbrial regulatory p 73.6 3.6 0.00012 29.5 4.0 28 88-115 13-40 (81)
90 2pij_A Prophage PFL 6 CRO; tra 73.5 1.6 5.5E-05 29.8 2.0 25 85-110 10-34 (67)
91 3d0s_A Transcriptional regulat 73.4 2.2 7.4E-05 36.8 3.3 78 38-115 107-203 (227)
92 1l9z_H Sigma factor SIGA; heli 73.4 3 0.0001 40.5 4.6 47 72-118 375-424 (438)
93 3g3z_A NMB1585, transcriptiona 73.3 3.9 0.00013 32.5 4.6 43 72-115 28-71 (145)
94 2pg4_A Uncharacterized protein 73.3 2.7 9.4E-05 31.1 3.4 27 89-115 30-57 (95)
95 1ujs_A Actin-binding LIM prote 73.1 0.96 3.3E-05 33.5 0.7 22 36-57 46-67 (88)
96 2fmy_A COOA, carbon monoxide o 72.9 1.9 6.6E-05 37.0 2.8 44 72-115 136-193 (220)
97 2l0k_A Stage III sporulation p 72.8 1.8 6.3E-05 32.4 2.3 26 88-113 19-44 (93)
98 3bpv_A Transcriptional regulat 72.7 4 0.00014 32.0 4.5 43 72-115 26-69 (138)
99 1tbx_A ORF F-93, hypothetical 72.6 3.5 0.00012 30.6 3.9 39 76-115 10-52 (99)
100 2q0o_A Probable transcriptiona 72.6 3.2 0.00011 36.4 4.3 46 71-118 174-219 (236)
101 2zcw_A TTHA1359, transcription 72.6 3.3 0.00011 35.0 4.2 44 72-115 116-172 (202)
102 2frh_A SARA, staphylococcal ac 72.5 3.5 0.00012 32.3 4.0 44 72-115 34-79 (127)
103 1xwr_A Regulatory protein CII; 72.4 3.6 0.00012 31.1 3.8 32 81-113 16-47 (97)
104 2fbh_A Transcriptional regulat 72.4 3.4 0.00012 32.7 4.0 43 73-115 35-78 (146)
105 1l3l_A Transcriptional activat 72.1 3.8 0.00013 35.9 4.6 46 71-118 172-217 (234)
106 2fbi_A Probable transcriptiona 71.6 3.8 0.00013 32.2 4.1 43 72-115 33-76 (142)
107 2dk5_A DNA-directed RNA polyme 71.5 2.8 9.6E-05 31.2 3.0 45 71-115 16-62 (91)
108 4dyq_A Gene 1 protein; GP1, oc 71.3 1.8 6.2E-05 35.0 2.1 33 81-113 20-53 (140)
109 3nrv_A Putative transcriptiona 71.3 4.4 0.00015 32.3 4.5 43 72-115 37-80 (148)
110 2nnn_A Probable transcriptiona 71.3 4.2 0.00014 31.9 4.3 43 72-115 35-78 (140)
111 3k0l_A Repressor protein; heli 71.3 4.6 0.00016 32.9 4.6 43 72-115 43-86 (162)
112 3jth_A Transcription activator 70.8 2.7 9.3E-05 31.2 2.9 28 88-115 35-62 (98)
113 3bja_A Transcriptional regulat 70.7 4.4 0.00015 31.7 4.3 43 72-115 30-73 (139)
114 4b8x_A SCO5413, possible MARR- 70.7 5.3 0.00018 32.1 4.8 44 72-115 32-77 (147)
115 2bv6_A MGRA, HTH-type transcri 70.7 4.2 0.00014 32.1 4.2 43 72-115 34-77 (142)
116 4hbl_A Transcriptional regulat 70.6 4.6 0.00016 32.3 4.5 43 72-115 38-81 (149)
117 3b02_A Transcriptional regulat 70.4 3.4 0.00012 34.6 3.8 46 71-116 108-166 (195)
118 2pex_A Transcriptional regulat 70.3 4.4 0.00015 32.5 4.3 43 72-115 44-87 (153)
119 3eco_A MEPR; mutlidrug efflux 70.2 4.5 0.00016 31.7 4.3 44 72-115 28-73 (139)
120 3bro_A Transcriptional regulat 70.1 4.9 0.00017 31.5 4.5 44 72-115 31-76 (141)
121 3cjn_A Transcriptional regulat 70.0 4.5 0.00015 32.8 4.3 43 72-115 49-92 (162)
122 3u2r_A Regulatory protein MARR 70.0 5 0.00017 32.8 4.7 44 72-115 43-88 (168)
123 2kko_A Possible transcriptiona 70.0 3.2 0.00011 31.6 3.2 38 77-116 28-65 (108)
124 1ft9_A Carbon monoxide oxidati 69.7 3 0.0001 35.8 3.3 44 72-115 132-189 (222)
125 3oop_A LIN2960 protein; protei 69.7 4.3 0.00015 32.1 4.0 43 72-115 34-77 (143)
126 2fu4_A Ferric uptake regulatio 69.7 5 0.00017 28.7 4.1 29 88-116 32-65 (83)
127 2a6h_F RNA polymerase sigma fa 69.4 3.6 0.00012 39.9 4.1 47 72-118 360-409 (423)
128 3hsr_A HTH-type transcriptiona 69.3 4 0.00014 32.3 3.8 43 72-115 33-76 (140)
129 1on2_A Transcriptional regulat 69.3 4 0.00014 32.5 3.8 28 88-115 21-48 (142)
130 3fm5_A Transcriptional regulat 69.2 3.4 0.00012 33.1 3.4 44 72-115 36-80 (150)
131 3bj6_A Transcriptional regulat 68.9 4.9 0.00017 32.1 4.3 43 72-115 37-80 (152)
132 1o5l_A Transcriptional regulat 68.9 1.3 4.5E-05 38.0 0.8 58 72-129 140-205 (213)
133 1z91_A Organic hydroperoxide r 68.9 4.7 0.00016 32.0 4.1 44 72-116 37-81 (147)
134 1q1h_A TFE, transcription fact 68.6 4.7 0.00016 30.6 3.9 38 78-115 22-59 (110)
135 2a61_A Transcriptional regulat 68.4 4.9 0.00017 31.7 4.2 43 72-115 30-73 (145)
136 3bdd_A Regulatory protein MARR 68.3 5 0.00017 31.5 4.2 43 72-115 28-71 (142)
137 2rdp_A Putative transcriptiona 68.3 4.9 0.00017 32.0 4.2 43 72-115 39-82 (150)
138 1jgs_A Multiple antibiotic res 68.3 5.1 0.00018 31.3 4.2 43 72-115 31-74 (138)
139 2qww_A Transcriptional regulat 68.2 5.1 0.00018 32.1 4.3 43 72-115 38-81 (154)
140 3pqk_A Biofilm growth-associat 67.9 3.5 0.00012 30.9 2.9 29 87-115 34-62 (102)
141 1lj9_A Transcriptional regulat 67.8 3.9 0.00013 32.3 3.4 42 73-115 27-69 (144)
142 3tgn_A ADC operon repressor AD 67.7 5.7 0.00019 31.4 4.4 42 72-115 35-77 (146)
143 2cw1_A SN4M; lambda CRO fold, 67.7 2.3 7.9E-05 29.5 1.7 21 90-110 14-34 (65)
144 3kcc_A Catabolite gene activat 67.5 4 0.00014 36.1 3.8 44 72-115 187-243 (260)
145 3cdh_A Transcriptional regulat 67.4 5.9 0.0002 31.8 4.5 43 72-115 40-83 (155)
146 2fa5_A Transcriptional regulat 67.0 5.8 0.0002 32.0 4.4 42 73-115 47-89 (162)
147 1s3j_A YUSO protein; structura 66.9 4.8 0.00016 32.3 3.8 43 72-115 34-77 (155)
148 3dkw_A DNR protein; CRP-FNR, H 66.7 3.6 0.00012 35.2 3.2 44 73-116 151-205 (227)
149 3mky_B Protein SOPB; partition 66.6 4.3 0.00015 34.5 3.5 43 71-113 22-66 (189)
150 4ev0_A Transcription regulator 66.6 3.1 0.00011 35.3 2.8 44 72-115 139-189 (216)
151 2hr3_A Probable transcriptiona 66.6 5.9 0.0002 31.4 4.3 43 73-115 33-76 (147)
152 3kp7_A Transcriptional regulat 66.5 5.2 0.00018 32.0 4.0 42 72-115 35-77 (151)
153 2oqg_A Possible transcriptiona 66.2 4.1 0.00014 31.0 3.1 37 77-115 24-60 (114)
154 3f6o_A Probable transcriptiona 66.2 3.7 0.00013 31.8 2.9 29 87-115 29-57 (118)
155 1r71_A Transcriptional repress 66.1 4.7 0.00016 34.1 3.6 41 71-111 34-74 (178)
156 3jw4_A Transcriptional regulat 66.1 4.9 0.00017 32.0 3.7 44 72-115 38-83 (148)
157 3boq_A Transcriptional regulat 65.9 5.3 0.00018 32.2 3.9 43 73-115 45-88 (160)
158 3nqo_A MARR-family transcripti 65.4 8.2 0.00028 32.4 5.2 43 73-115 39-83 (189)
159 3e6m_A MARR family transcripti 65.3 5.5 0.00019 32.3 3.9 42 73-115 51-93 (161)
160 2p5k_A Arginine repressor; DNA 65.3 5.6 0.00019 26.7 3.3 24 88-111 18-46 (64)
161 1okr_A MECI, methicillin resis 64.7 5.2 0.00018 30.8 3.5 43 72-115 7-54 (123)
162 1u2w_A CADC repressor, cadmium 64.5 5.2 0.00018 31.2 3.4 28 88-115 55-82 (122)
163 2fbk_A Transcriptional regulat 64.3 6.8 0.00023 32.5 4.4 44 72-115 66-112 (181)
164 2nyx_A Probable transcriptiona 64.2 6.1 0.00021 32.4 4.0 43 72-115 42-85 (168)
165 3f3x_A Transcriptional regulat 64.1 6.5 0.00022 31.1 4.1 41 73-115 35-76 (144)
166 2zkz_A Transcriptional repress 63.7 4.4 0.00015 30.3 2.8 29 88-116 40-68 (99)
167 2eth_A Transcriptional regulat 63.5 6.3 0.00022 31.6 3.9 43 72-115 41-84 (154)
168 2g9w_A Conserved hypothetical 62.7 7 0.00024 31.1 4.0 44 72-115 6-54 (138)
169 1fx7_A Iron-dependent represso 62.6 4.8 0.00017 35.2 3.2 41 75-115 7-50 (230)
170 1neq_A DNA-binding protein NER 62.6 4.6 0.00016 28.6 2.5 26 87-112 20-45 (74)
171 2xi8_A Putative transcription 62.5 3 0.0001 28.0 1.5 25 87-111 12-36 (66)
172 3e97_A Transcriptional regulat 62.0 5 0.00017 34.5 3.2 42 74-115 146-201 (231)
173 3s2w_A Transcriptional regulat 61.9 4.9 0.00017 32.5 3.0 38 77-115 53-90 (159)
174 1ub9_A Hypothetical protein PH 61.8 6.3 0.00022 28.9 3.4 28 88-115 29-56 (100)
175 1rzs_A Antirepressor, regulato 61.5 1.9 6.5E-05 29.3 0.3 22 89-110 10-31 (61)
176 1k78_A Paired box protein PAX5 61.4 17 0.0006 28.9 6.3 76 38-114 49-143 (149)
177 3fmy_A HTH-type transcriptiona 61.3 3.2 0.00011 29.1 1.5 27 85-111 20-46 (73)
178 1zug_A Phage 434 CRO protein; 61.0 3.3 0.00011 28.3 1.5 26 86-111 13-38 (71)
179 3iyd_F RNA polymerase sigma fa 60.9 4.6 0.00016 41.1 3.1 46 72-117 550-598 (613)
180 1r69_A Repressor protein CI; g 60.7 3.4 0.00011 28.0 1.5 26 86-111 11-36 (69)
181 2a6c_A Helix-turn-helix motif; 60.5 3.7 0.00013 29.5 1.8 27 85-111 27-53 (83)
182 3bd1_A CRO protein; transcript 60.5 3.6 0.00012 29.1 1.7 24 88-112 11-34 (79)
183 3m8j_A FOCB protein; all-alpha 60.0 35 0.0012 26.2 7.1 58 48-116 29-87 (111)
184 2gau_A Transcriptional regulat 59.6 9 0.00031 32.8 4.5 44 72-115 150-206 (232)
185 1pdn_C Protein (PRD paired); p 59.6 12 0.00041 28.5 4.8 74 38-112 34-126 (128)
186 2cyy_A Putative HTH-type trans 59.4 11 0.00036 30.4 4.6 28 88-115 20-47 (151)
187 3kz3_A Repressor protein CI; f 59.2 3.8 0.00013 29.1 1.6 25 87-111 23-47 (80)
188 2hzt_A Putative HTH-type trans 59.2 7.2 0.00024 29.5 3.3 29 87-115 25-54 (107)
189 2cfx_A HTH-type transcriptiona 59.0 9.9 0.00034 30.4 4.3 28 88-115 18-45 (144)
190 1mkm_A ICLR transcriptional re 58.8 6.5 0.00022 34.8 3.4 43 73-115 4-49 (249)
191 1sfu_A 34L protein; protein/Z- 58.4 13 0.00044 26.5 4.2 41 74-114 12-54 (75)
192 2w25_A Probable transcriptiona 58.4 10 0.00034 30.5 4.3 28 88-115 20-47 (150)
193 2jsc_A Transcriptional regulat 58.2 7.1 0.00024 30.2 3.2 29 87-115 32-60 (118)
194 3omt_A Uncharacterized protein 58.1 4.1 0.00014 28.2 1.6 25 87-111 19-43 (73)
195 4fx0_A Probable transcriptiona 58.0 13 0.00045 29.8 4.9 43 73-115 31-78 (148)
196 2xrn_A HTH-type transcriptiona 57.9 6.8 0.00023 34.6 3.4 42 74-115 3-47 (241)
197 2bgc_A PRFA; bacterial infecti 57.9 7.3 0.00025 33.8 3.6 44 72-115 137-196 (238)
198 3f6v_A Possible transcriptiona 57.8 6.9 0.00024 31.9 3.1 29 87-115 69-97 (151)
199 2hin_A GP39, repressor protein 57.7 4.2 0.00014 28.7 1.5 22 91-112 12-33 (71)
200 2b5a_A C.BCLI; helix-turn-heli 57.7 4 0.00014 28.4 1.5 26 86-111 20-45 (77)
201 2cg4_A Regulatory protein ASNC 57.6 12 0.00041 30.2 4.6 28 88-115 21-48 (152)
202 1i1g_A Transcriptional regulat 57.4 9.7 0.00033 30.1 4.0 28 88-115 17-44 (141)
203 2pn6_A ST1022, 150AA long hypo 57.3 11 0.00038 30.2 4.3 27 89-115 17-43 (150)
204 3qq6_A HTH-type transcriptiona 57.3 4.1 0.00014 28.9 1.5 29 84-112 18-46 (78)
205 2g7u_A Transcriptional regulat 56.9 9.5 0.00033 33.9 4.2 44 72-115 9-55 (257)
206 2dbb_A Putative HTH-type trans 56.6 12 0.00042 30.0 4.5 28 88-115 22-49 (151)
207 3uj3_X DNA-invertase; helix-tu 56.5 2.3 7.9E-05 36.2 0.0 36 78-113 147-182 (193)
208 2fxa_A Protease production reg 56.4 11 0.00036 32.4 4.3 43 72-115 45-88 (207)
209 2w48_A Sorbitol operon regulat 56.3 8.8 0.0003 35.3 4.0 35 81-115 13-47 (315)
210 2r1j_L Repressor protein C2; p 56.1 4.5 0.00015 27.2 1.5 25 87-111 16-40 (68)
211 3b7h_A Prophage LP1 protein 11 56.0 4.1 0.00014 28.4 1.3 25 87-111 18-42 (78)
212 4ghj_A Probable transcriptiona 55.3 4.5 0.00015 30.7 1.5 35 76-110 34-70 (101)
213 2obp_A Putative DNA-binding pr 55.3 9.2 0.00032 28.7 3.2 43 73-115 14-62 (96)
214 1y7y_A C.AHDI; helix-turn-heli 55.3 4.7 0.00016 27.7 1.5 25 87-111 24-48 (74)
215 2k9q_A Uncharacterized protein 55.2 4 0.00014 28.7 1.1 26 86-111 12-37 (77)
216 1xn7_A Hypothetical protein YH 55.1 12 0.00041 26.8 3.7 28 88-115 15-42 (78)
217 1yyv_A Putative transcriptiona 54.9 9.5 0.00032 30.2 3.4 28 88-115 47-75 (131)
218 2wiu_B HTH-type transcriptiona 54.9 5.1 0.00017 28.7 1.7 25 87-111 23-47 (88)
219 3r4k_A Transcriptional regulat 54.7 9.9 0.00034 33.9 3.9 44 73-116 2-48 (260)
220 3bs3_A Putative DNA-binding pr 54.2 5 0.00017 27.8 1.5 25 87-111 21-45 (76)
221 3eus_A DNA-binding protein; st 53.8 5.2 0.00018 28.9 1.6 27 85-111 23-49 (86)
222 2p5v_A Transcriptional regulat 53.7 14 0.00047 30.1 4.4 27 89-115 24-50 (162)
223 2k4b_A Transcriptional regulat 53.5 6.3 0.00022 29.7 2.0 39 76-115 37-79 (99)
224 2ovg_A Phage lambda CRO; trans 53.5 3.9 0.00013 28.4 0.8 22 90-111 14-35 (66)
225 2o0y_A Transcriptional regulat 53.4 10 0.00034 33.9 3.7 44 72-115 18-64 (260)
226 2ia2_A Putative transcriptiona 53.1 11 0.00036 33.8 3.9 44 72-115 16-62 (265)
227 1j9i_A GPNU1 DBD;, terminase s 52.9 4.6 0.00016 27.9 1.1 22 91-112 4-25 (68)
228 3kjx_A Transcriptional regulat 52.9 6.4 0.00022 36.2 2.4 23 90-112 11-33 (344)
229 1adr_A P22 C2 repressor; trans 52.8 4.6 0.00016 27.9 1.1 25 87-111 16-40 (76)
230 2kpj_A SOS-response transcript 52.6 7.2 0.00025 28.5 2.2 25 87-111 20-44 (94)
231 1vz0_A PARB, chromosome partit 52.4 11 0.00037 33.2 3.7 41 71-111 116-156 (230)
232 1sd4_A Penicillinase repressor 51.4 15 0.00052 28.2 4.1 43 72-115 7-54 (126)
233 2ia0_A Putative HTH-type trans 51.4 16 0.00054 30.3 4.4 43 72-115 14-57 (171)
234 3s8q_A R-M controller protein; 51.2 5.9 0.0002 28.1 1.5 26 86-111 21-46 (82)
235 2wte_A CSA3; antiviral protein 51.0 14 0.00047 32.8 4.2 29 87-115 164-192 (244)
236 3t76_A VANU, transcriptional r 50.9 5.9 0.0002 29.1 1.5 26 86-111 34-59 (88)
237 1a04_A Nitrate/nitrite respons 50.9 9 0.00031 32.4 2.9 45 72-118 154-198 (215)
238 1z7u_A Hypothetical protein EF 50.7 15 0.0005 28.0 3.8 35 79-115 27-62 (112)
239 2f2e_A PA1607; transcription f 50.6 9.6 0.00033 30.7 2.9 29 88-116 36-64 (146)
240 2ewt_A BLDD, putative DNA-bind 50.5 7.1 0.00024 26.6 1.8 25 87-111 19-45 (71)
241 1z4h_A TORI, TOR inhibition pr 50.4 7 0.00024 26.8 1.7 23 90-112 11-33 (66)
242 2qq9_A Diphtheria toxin repres 50.4 8.1 0.00028 33.7 2.6 40 76-115 8-50 (226)
243 1qpz_A PURA, protein (purine n 50.2 5.6 0.00019 36.6 1.5 22 91-112 2-23 (340)
244 2hsg_A Glucose-resistance amyl 50.1 5.5 0.00019 36.5 1.4 23 90-112 3-25 (332)
245 1lmb_3 Protein (lambda repress 50.0 5.3 0.00018 29.0 1.1 26 86-111 27-52 (92)
246 3k2z_A LEXA repressor; winged 49.8 14 0.00047 31.3 3.9 39 77-115 8-50 (196)
247 3f6w_A XRE-family like protein 49.7 5.5 0.00019 28.2 1.1 26 86-111 24-49 (83)
248 1j5y_A Transcriptional regulat 49.7 16 0.00053 30.8 4.2 27 89-115 36-62 (187)
249 2fe3_A Peroxide operon regulat 49.7 21 0.00072 28.6 4.8 37 79-115 27-68 (145)
250 2e1c_A Putative HTH-type trans 49.5 17 0.0006 30.0 4.4 28 88-115 40-67 (171)
251 3o9x_A Uncharacterized HTH-typ 49.5 7 0.00024 30.8 1.8 27 85-111 80-106 (133)
252 3hrs_A Metalloregulator SCAR; 49.3 13 0.00045 32.0 3.8 40 76-115 4-46 (214)
253 2ef8_A C.ECOT38IS, putative tr 49.2 6.6 0.00022 27.8 1.5 25 87-111 21-45 (84)
254 3f52_A CLP gene regulator (CLG 49.1 11 0.00039 28.7 3.0 39 73-111 23-63 (117)
255 1ais_B TFB TFIIB, protein (tra 49.1 40 0.0014 28.4 6.8 47 72-118 144-194 (200)
256 3trb_A Virulence-associated pr 49.0 7 0.00024 29.6 1.7 39 72-111 11-49 (104)
257 3dn7_A Cyclic nucleotide bindi 49.0 3.8 0.00013 34.2 0.1 43 72-114 148-193 (194)
258 2b0l_A GTP-sensing transcripti 48.8 8.9 0.0003 29.0 2.2 25 91-115 45-69 (102)
259 2k02_A Ferrous iron transport 48.8 13 0.00044 27.3 3.0 27 88-114 15-41 (87)
260 3oou_A LIN2118 protein; protei 48.4 18 0.0006 27.1 4.0 30 85-114 17-46 (108)
261 2h09_A Transcriptional regulat 48.2 12 0.00043 30.0 3.2 28 88-115 53-80 (155)
262 3h5t_A Transcriptional regulat 48.0 6.8 0.00023 36.4 1.8 22 90-111 10-31 (366)
263 2ppx_A AGR_C_3184P, uncharacte 47.8 6.9 0.00024 29.1 1.5 26 86-111 40-65 (99)
264 3hot_A Transposable element ma 47.8 36 0.0012 31.1 6.8 186 42-235 31-255 (345)
265 3df8_A Possible HXLR family tr 47.2 15 0.00052 28.0 3.4 33 84-116 34-70 (111)
266 2ict_A Antitoxin HIGA; helix-t 47.0 8 0.00027 28.2 1.7 25 87-111 19-43 (94)
267 2ofy_A Putative XRE-family tra 46.9 13 0.00044 26.4 2.8 33 79-111 17-49 (86)
268 2eby_A Putative HTH-type trans 46.9 8 0.00027 29.4 1.7 27 85-111 20-46 (113)
269 3c3w_A Two component transcrip 46.9 9.4 0.00032 32.7 2.4 44 72-117 149-192 (225)
270 1gdt_A GD resolvase, protein ( 46.8 6.5 0.00022 33.0 1.3 27 85-111 154-180 (183)
271 2r0q_C Putative transposon TN5 45.7 9.9 0.00034 32.6 2.3 28 85-112 171-198 (209)
272 1uly_A Hypothetical protein PH 45.5 15 0.00051 31.2 3.4 37 77-115 23-59 (192)
273 1x57_A Endothelial differentia 45.4 11 0.00039 27.2 2.3 27 85-111 22-48 (91)
274 3cec_A Putative antidote prote 45.0 8.2 0.00028 28.8 1.5 26 86-111 28-53 (104)
275 3cta_A Riboflavin kinase; stru 44.3 17 0.00057 31.6 3.6 27 89-115 27-53 (230)
276 3mn2_A Probable ARAC family tr 44.0 21 0.00072 26.6 3.8 29 85-113 14-42 (108)
277 1v4r_A Transcriptional repress 44.0 7.6 0.00026 29.1 1.2 23 91-113 37-59 (102)
278 2vn2_A DNAD, chromosome replic 44.0 22 0.00076 27.8 4.0 26 90-115 52-77 (128)
279 1yio_A Response regulatory pro 43.8 12 0.00043 31.2 2.7 44 72-117 142-185 (208)
280 3n0r_A Response regulator; sig 43.7 14 0.00049 33.3 3.2 48 72-120 111-158 (286)
281 2fsw_A PG_0823 protein; alpha- 43.6 19 0.00064 27.1 3.4 29 87-115 36-65 (107)
282 2ek5_A Predicted transcription 43.0 19 0.00065 28.3 3.5 23 91-113 30-52 (129)
283 2k27_A Paired box protein PAX- 43.0 34 0.0012 27.5 5.2 75 38-113 42-135 (159)
284 1c9b_A General transcription f 42.8 51 0.0017 27.9 6.5 41 85-125 155-195 (207)
285 2l49_A C protein; P2 bacteriop 42.8 8.9 0.0003 28.2 1.4 26 86-111 14-39 (99)
286 2k9s_A Arabinose operon regula 42.5 25 0.00087 26.2 4.0 27 88-114 19-45 (107)
287 3mq0_A Transcriptional repress 42.3 9.7 0.00033 34.3 1.8 44 72-115 25-71 (275)
288 2v57_A TETR family transcripti 42.3 14 0.00047 30.1 2.7 40 81-122 26-65 (190)
289 3i4p_A Transcriptional regulat 42.2 26 0.00091 28.5 4.4 27 89-115 17-43 (162)
290 3lsg_A Two-component response 42.2 63 0.0021 23.6 6.2 73 38-114 20-94 (103)
291 3tqn_A Transcriptional regulat 42.1 13 0.00044 28.5 2.2 25 91-115 35-59 (113)
292 3kxa_A NGO0477 protein, putati 41.9 12 0.00042 30.0 2.2 27 85-111 77-103 (141)
293 1b0n_A Protein (SINR protein); 41.9 9.7 0.00033 28.6 1.5 26 86-111 11-36 (111)
294 1hsj_A Fusion protein consisti 41.7 14 0.00048 35.9 3.0 44 72-115 401-446 (487)
295 3plo_X DNA-invertase; resolvas 41.2 5.6 0.00019 33.8 0.0 36 82-117 151-186 (193)
296 1xmk_A Double-stranded RNA-spe 41.1 25 0.00086 25.2 3.5 40 75-115 12-52 (79)
297 2auw_A Hypothetical protein NE 40.8 9.9 0.00034 31.8 1.5 28 84-111 98-125 (170)
298 2o20_A Catabolite control prot 40.8 5.8 0.0002 36.3 0.0 23 90-112 6-28 (332)
299 3ctp_A Periplasmic binding pro 40.7 5.8 0.0002 36.3 0.0 22 91-112 4-25 (330)
300 3op9_A PLI0006 protein; struct 40.5 9.8 0.00034 28.9 1.3 26 86-111 19-44 (114)
301 3oio_A Transcriptional regulat 40.4 23 0.00079 26.7 3.5 28 86-113 20-47 (113)
302 3g5g_A Regulatory protein; tra 40.3 12 0.00042 27.8 1.8 35 77-111 27-63 (99)
303 1rr7_A Middle operon regulator 40.1 13 0.00046 29.4 2.1 28 88-115 91-118 (129)
304 1ixc_A CBNR, LYSR-type regulat 40.0 18 0.00063 31.7 3.3 39 79-118 6-44 (294)
305 3h5o_A Transcriptional regulat 40.0 6 0.00021 36.3 0.0 23 90-112 5-27 (339)
306 3mlf_A Transcriptional regulat 39.9 12 0.0004 28.6 1.7 27 85-111 32-58 (111)
307 3bil_A Probable LACI-family tr 39.9 6.1 0.00021 36.6 0.0 23 90-112 9-31 (348)
308 3jvd_A Transcriptional regulat 39.6 6.2 0.00021 36.3 0.0 23 90-112 7-29 (333)
309 2p8t_A Hypothetical protein PH 39.6 27 0.00091 29.9 4.0 40 76-115 17-56 (200)
310 2gqq_A Leucine-responsive regu 39.6 20 0.00067 29.3 3.2 30 86-115 24-53 (163)
311 3neu_A LIN1836 protein; struct 39.4 15 0.0005 28.7 2.2 25 91-115 39-63 (125)
312 3dbi_A Sugar-binding transcrip 39.3 6.3 0.00021 36.2 0.0 22 91-112 5-26 (338)
313 1jye_A Lactose operon represso 39.1 6.3 0.00022 36.4 0.0 24 90-113 4-27 (349)
314 2o38_A Hypothetical protein; a 38.7 12 0.00039 29.2 1.5 26 86-111 50-75 (120)
315 3e3m_A Transcriptional regulat 38.2 6.7 0.00023 36.3 0.0 23 90-112 13-35 (355)
316 2h8r_A Hepatocyte nuclear fact 37.7 10 0.00035 33.0 1.1 29 83-111 38-66 (221)
317 3ivp_A Putative transposon-rel 37.7 13 0.00045 28.7 1.7 27 85-111 21-47 (126)
318 3vk0_A NHTF, transcriptional r 37.4 12 0.00042 28.4 1.5 38 74-111 17-56 (114)
319 3klo_A Transcriptional regulat 37.2 18 0.0006 30.8 2.6 44 72-117 159-202 (225)
320 1ais_B TFB TFIIB, protein (tra 37.1 74 0.0025 26.6 6.6 76 42-117 18-97 (200)
321 3u1d_A Uncharacterized protein 36.9 26 0.00089 28.6 3.4 39 77-115 30-72 (151)
322 1p4x_A Staphylococcal accessor 36.8 31 0.0011 30.5 4.2 44 72-115 155-200 (250)
323 3mn2_A Probable ARAC family tr 36.4 97 0.0033 22.8 6.5 73 38-114 19-95 (108)
324 3lsg_A Two-component response 36.3 37 0.0013 24.9 4.0 26 89-114 19-44 (103)
325 1p4x_A Staphylococcal accessor 36.0 33 0.0011 30.3 4.2 44 72-115 31-76 (250)
326 2fq4_A Transcriptional regulat 35.9 15 0.00053 30.1 1.9 34 88-121 31-64 (192)
327 3by6_A Predicted transcription 35.9 18 0.00062 28.3 2.2 23 91-113 37-59 (126)
328 2wus_R RODZ, putative uncharac 35.7 16 0.00054 28.1 1.8 27 85-111 16-42 (112)
329 1ic8_A Hepatocyte nuclear fact 35.4 15 0.0005 31.4 1.7 26 86-111 40-65 (194)
330 1u8b_A ADA polyprotein; protei 35.4 27 0.00094 27.2 3.3 39 76-114 78-118 (133)
331 2jvl_A TRMBF1; coactivator, he 35.4 18 0.00063 27.2 2.1 25 87-111 47-71 (107)
332 1bl0_A Protein (multiple antib 35.0 33 0.0011 26.6 3.7 29 86-114 24-52 (129)
333 2y75_A HTH-type transcriptiona 34.9 30 0.001 26.8 3.4 27 89-115 26-52 (129)
334 2o3f_A Putative HTH-type trans 34.9 18 0.00061 27.7 2.0 24 89-112 39-62 (111)
335 2di3_A Bacterial regulatory pr 34.7 46 0.0016 28.8 5.0 23 92-114 31-53 (239)
336 1ntc_A Protein (nitrogen regul 34.3 28 0.00094 25.4 2.9 26 88-113 63-88 (91)
337 4ham_A LMO2241 protein; struct 34.1 20 0.00068 28.3 2.2 42 72-113 12-62 (134)
338 1y6u_A XIS, excisionase from t 33.7 19 0.00065 25.2 1.8 23 89-111 16-38 (70)
339 2p4w_A Transcriptional regulat 33.5 27 0.00093 29.8 3.1 29 87-115 26-54 (202)
340 3fzv_A Probable transcriptiona 33.0 22 0.00076 31.4 2.6 39 79-118 9-47 (306)
341 2v79_A DNA replication protein 33.0 52 0.0018 26.1 4.5 27 89-115 51-77 (135)
342 2esn_A Probable transcriptiona 32.9 26 0.0009 31.0 3.1 31 88-118 23-53 (310)
343 3bdn_A Lambda repressor; repre 32.6 27 0.00094 30.1 3.1 34 79-112 18-53 (236)
344 3egq_A TETR family transcripti 32.3 15 0.00052 29.3 1.3 35 89-123 24-58 (170)
345 2hku_A A putative transcriptio 32.1 30 0.001 28.8 3.2 40 81-121 32-71 (215)
346 3qkx_A Uncharacterized HTH-typ 31.8 17 0.00056 29.4 1.4 34 88-121 27-60 (188)
347 3lwj_A Putative TETR-family tr 31.8 16 0.00055 30.0 1.4 36 88-123 31-66 (202)
348 2ijl_A AGR_C_4647P, molybdenum 31.7 22 0.00076 28.3 2.1 39 78-117 28-66 (135)
349 3lsj_A DEST; transcriptional r 31.6 22 0.00075 29.7 2.3 37 88-124 31-67 (220)
350 3b73_A PHIH1 repressor-like pr 31.4 34 0.0012 26.2 3.1 40 76-116 15-56 (111)
351 1bja_A Transcription regulator 31.2 41 0.0014 25.0 3.4 35 78-113 20-55 (95)
352 3e7l_A Transcriptional regulat 31.1 36 0.0012 22.8 2.9 25 88-112 31-55 (63)
353 4a5n_A Uncharacterized HTH-typ 31.1 43 0.0015 26.4 3.8 29 87-115 37-66 (131)
354 3on4_A Transcriptional regulat 31.0 29 0.001 27.9 2.9 35 88-122 29-63 (191)
355 3mkl_A HTH-type transcriptiona 31.0 39 0.0013 25.7 3.5 28 86-113 20-47 (120)
356 3dew_A Transcriptional regulat 30.9 35 0.0012 27.7 3.4 37 88-124 27-63 (206)
357 3kkc_A TETR family transcripti 30.5 13 0.00044 29.9 0.5 34 89-122 32-65 (177)
358 3oou_A LIN2118 protein; protei 30.5 74 0.0025 23.5 4.9 73 38-114 22-96 (108)
359 2zcm_A Biofilm operon icaabcd 30.5 34 0.0011 27.8 3.2 35 88-122 26-60 (192)
360 3kks_A Integrase, IN; beta-str 30.3 1.8E+02 0.0062 22.1 9.9 39 271-313 90-128 (152)
361 3bqz_B HTH-type transcriptiona 30.2 35 0.0012 27.5 3.3 36 88-123 21-56 (194)
362 2iu5_A DHAS, YCEG, HTH-type dh 30.1 18 0.00061 29.8 1.4 34 89-122 33-66 (195)
363 2dg8_A Putative TETR-family tr 30.0 17 0.0006 29.8 1.3 36 88-123 28-63 (193)
364 3hhg_A Transcriptional regulat 29.9 32 0.0011 30.2 3.2 33 86-118 14-46 (306)
365 3ppb_A Putative TETR family tr 29.9 18 0.00063 29.3 1.4 34 88-121 28-61 (195)
366 3hot_A Transposable element ma 29.6 34 0.0012 31.2 3.4 36 80-115 13-55 (345)
367 2jj7_A Hemolysin II regulatory 29.5 20 0.00069 29.0 1.6 37 89-125 27-63 (186)
368 4hku_A LMO2814 protein, TETR t 29.5 35 0.0012 27.6 3.1 34 88-121 26-59 (178)
369 3ic7_A Putative transcriptiona 29.4 21 0.00072 27.9 1.6 24 91-114 37-60 (126)
370 1zk8_A Transcriptional regulat 29.0 16 0.00055 29.5 0.9 35 88-122 27-61 (183)
371 2o03_A Probable zinc uptake re 28.9 34 0.0012 26.7 2.8 27 89-115 26-57 (131)
372 3iwf_A Transcription regulator 28.9 26 0.0009 26.6 2.0 25 89-113 35-59 (107)
373 2p5t_A Putative transcriptiona 28.8 12 0.0004 30.5 0.0 24 86-109 11-34 (158)
374 3f1b_A TETR-like transcription 28.8 20 0.00069 29.3 1.5 35 88-122 33-67 (203)
375 4g6q_A Putative uncharacterize 28.7 51 0.0018 27.4 4.1 30 87-116 34-64 (182)
376 3gzi_A Transcriptional regulat 28.7 35 0.0012 28.2 3.1 34 89-122 37-70 (218)
377 2k9s_A Arabinose operon regula 28.5 1.3E+02 0.0045 21.9 6.1 73 38-114 21-95 (107)
378 3lfp_A CSP231I C protein; tran 28.4 22 0.00074 26.1 1.4 26 86-111 11-40 (98)
379 2fd5_A Transcriptional regulat 28.3 39 0.0013 27.0 3.2 35 88-122 26-60 (180)
380 3isp_A HTH-type transcriptiona 28.2 33 0.0011 30.2 3.0 33 86-118 17-49 (303)
381 2rek_A Putative TETR-family tr 27.7 35 0.0012 27.9 2.8 36 88-123 34-69 (199)
382 2qwt_A Transcriptional regulat 27.7 39 0.0013 27.7 3.1 36 87-122 30-65 (196)
383 3lhq_A Acrab operon repressor 27.6 37 0.0013 27.9 3.0 36 88-123 33-68 (220)
384 2g7s_A Transcriptional regulat 27.6 36 0.0012 27.3 2.9 36 88-123 27-62 (194)
385 3mkl_A HTH-type transcriptiona 27.4 1.2E+02 0.0043 22.7 5.9 74 38-116 24-99 (120)
386 2d6y_A Putative TETR family re 27.4 42 0.0014 27.7 3.3 35 88-122 27-61 (202)
387 3dpj_A Transcription regulator 27.3 22 0.00074 29.0 1.4 35 88-122 27-61 (194)
388 4aci_A HTH-type transcriptiona 27.3 20 0.00069 29.1 1.2 35 89-123 34-68 (191)
389 3cwr_A Transcriptional regulat 27.2 39 0.0013 27.5 3.0 37 88-124 36-72 (208)
390 2ras_A Transcriptional regulat 27.1 43 0.0015 27.6 3.4 36 88-123 30-65 (212)
391 2zb9_A Putative transcriptiona 27.1 37 0.0013 28.1 2.9 34 88-121 42-75 (214)
392 2qlz_A Transcription factor PF 27.1 32 0.0011 30.1 2.5 29 87-115 23-51 (232)
393 3aqt_A Bacterial regulatory pr 27.0 39 0.0013 29.0 3.1 36 88-123 65-100 (245)
394 3knw_A Putative transcriptiona 26.9 39 0.0013 27.7 3.0 35 88-122 33-67 (212)
395 3fxq_A LYSR type regulator of 26.9 40 0.0014 29.8 3.3 33 86-118 13-45 (305)
396 1jhf_A LEXA repressor; LEXA SO 26.9 43 0.0015 28.1 3.3 28 88-115 22-52 (202)
397 3cjd_A Transcriptional regulat 26.9 21 0.00073 29.6 1.3 35 88-122 31-65 (198)
398 2o7t_A Transcriptional regulat 26.9 21 0.00073 29.3 1.3 36 88-123 27-62 (199)
399 2eh3_A Transcriptional regulat 26.7 41 0.0014 27.0 3.0 34 88-121 21-54 (179)
400 2i10_A Putative TETR transcrip 26.7 51 0.0018 27.1 3.8 37 88-124 30-66 (202)
401 3szp_A Transcriptional regulat 26.6 35 0.0012 29.5 2.8 34 85-118 11-44 (291)
402 1mzb_A Ferric uptake regulatio 26.6 57 0.0019 25.6 3.8 27 89-115 34-65 (136)
403 3col_A Putative transcription 26.6 35 0.0012 27.5 2.6 36 88-123 29-64 (196)
404 3dcf_A Transcriptional regulat 26.5 23 0.00078 29.4 1.4 35 89-123 51-85 (218)
405 3nxc_A HTH-type protein SLMA; 26.4 20 0.00069 29.6 1.1 34 89-122 45-78 (212)
406 3qbm_A TETR transcriptional re 26.4 37 0.0013 27.5 2.8 34 88-121 26-59 (199)
407 3c2b_A Transcriptional regulat 26.3 44 0.0015 27.7 3.3 36 88-123 34-69 (221)
408 2wui_A MEXZ, transcriptional r 26.2 41 0.0014 27.9 3.0 36 88-123 30-65 (210)
409 3vp5_A Transcriptional regulat 26.1 40 0.0014 27.5 2.9 34 88-121 31-64 (189)
410 1al3_A Cys regulon transcripti 26.0 14 0.00049 33.3 0.0 40 79-118 6-45 (324)
411 3vib_A MTRR; helix-turn-helix 25.9 41 0.0014 27.8 3.0 34 88-121 29-62 (210)
412 3ccy_A Putative TETR-family tr 25.9 40 0.0014 27.6 2.9 34 88-121 33-66 (203)
413 3b81_A Transcriptional regulat 25.9 38 0.0013 27.5 2.8 34 88-121 30-63 (203)
414 2qko_A Possible transcriptiona 25.9 48 0.0017 27.4 3.5 37 88-124 47-83 (215)
415 3frq_A Repressor protein MPHR( 25.9 20 0.00068 29.4 0.9 35 89-123 28-62 (195)
416 1pb6_A Hypothetical transcript 25.9 44 0.0015 27.4 3.2 35 88-122 37-71 (212)
417 3kz9_A SMCR; transcriptional r 25.8 41 0.0014 27.3 2.9 35 88-122 36-70 (206)
418 1y9q_A Transcriptional regulat 25.7 25 0.00085 29.3 1.5 25 87-111 22-46 (192)
419 3fym_A Putative uncharacterize 25.7 25 0.00087 27.5 1.5 26 85-110 12-37 (130)
420 2yve_A Transcriptional regulat 25.3 42 0.0014 27.2 2.9 33 89-121 24-56 (185)
421 3vpr_A Transcriptional regulat 25.2 27 0.00093 28.4 1.7 30 88-117 22-51 (190)
422 3s5r_A Transcriptional regulat 25.2 51 0.0017 27.1 3.5 35 88-122 29-63 (216)
423 3f0c_A TETR-molecule A, transc 25.1 44 0.0015 27.5 3.1 35 88-122 30-64 (216)
424 3pas_A TETR family transcripti 25.1 21 0.00073 28.9 0.9 35 89-123 28-62 (195)
425 2guh_A Putative TETR-family tr 25.1 29 0.001 29.2 1.9 36 89-124 59-94 (214)
426 2np5_A Transcriptional regulat 25.1 24 0.00082 29.3 1.3 33 88-120 28-60 (203)
427 2qtq_A Transcriptional regulat 25.0 50 0.0017 27.0 3.4 35 88-122 35-69 (213)
428 3ljl_A Transcriptional regulat 24.7 19 0.00065 28.6 0.6 33 89-121 34-66 (156)
429 1bia_A BIRA bifunctional prote 24.7 54 0.0018 30.1 3.7 27 89-115 19-45 (321)
430 1wft_A 1700129L13RIK protein; 24.6 54 0.0018 25.3 3.0 26 144-169 5-36 (123)
431 3rh2_A Hypothetical TETR-like 24.6 44 0.0015 27.6 2.9 35 88-122 22-56 (212)
432 2ibd_A Possible transcriptiona 24.5 47 0.0016 27.3 3.1 34 88-121 33-66 (204)
433 3nrg_A TETR family transcripti 24.5 41 0.0014 27.7 2.7 35 88-122 32-66 (217)
434 3bru_A Regulatory protein, TET 24.5 44 0.0015 27.7 2.9 35 88-122 49-83 (222)
435 1umq_A Photosynthetic apparatu 24.4 47 0.0016 23.9 2.6 25 88-112 53-77 (81)
436 3bhq_A Transcriptional regulat 24.4 50 0.0017 27.3 3.3 34 88-121 31-64 (211)
437 3e7q_A Transcriptional regulat 24.4 20 0.00069 29.5 0.7 35 89-123 34-68 (215)
438 3on2_A Probable transcriptiona 24.4 16 0.00055 29.7 0.0 34 89-122 32-65 (199)
439 2qib_A TETR-family transcripti 24.3 25 0.00086 29.9 1.3 34 89-122 33-66 (231)
440 2oer_A Probable transcriptiona 24.2 27 0.00091 29.2 1.4 34 88-121 43-76 (214)
441 3mnl_A KSTR, transcriptional r 24.1 23 0.00078 29.0 0.9 33 89-121 40-72 (203)
442 3him_A Probable transcriptiona 24.1 38 0.0013 27.6 2.4 35 88-122 35-69 (211)
443 2gfn_A HTH-type transcriptiona 24.0 27 0.00094 29.1 1.5 34 88-121 28-61 (209)
444 3geu_A Intercellular adhesion 23.9 21 0.00072 29.0 0.7 34 89-122 23-56 (189)
445 3eup_A Transcriptional regulat 23.8 19 0.00064 29.5 0.3 33 89-121 31-63 (204)
446 3o60_A LIN0861 protein; PSI, M 23.8 23 0.00078 29.3 0.9 33 88-120 39-71 (185)
447 2xdn_A HTH-type transcriptiona 23.8 49 0.0017 27.3 3.0 36 88-123 30-65 (210)
448 1sgm_A Putative HTH-type trans 23.7 49 0.0017 26.5 3.0 33 88-120 25-58 (191)
449 1r7j_A Conserved hypothetical 23.7 92 0.0031 22.8 4.2 38 78-115 9-46 (95)
450 3oio_A Transcriptional regulat 23.7 1.2E+02 0.004 22.5 5.0 74 38-115 24-99 (113)
451 1vi0_A Transcriptional regulat 23.6 47 0.0016 27.5 2.9 35 88-122 27-61 (206)
452 2nx4_A Transcriptional regulat 23.5 50 0.0017 27.0 3.0 32 88-119 29-60 (194)
453 3bjb_A Probable transcriptiona 23.5 47 0.0016 27.5 2.9 35 89-123 42-76 (207)
454 2o0m_A Transcriptional regulat 23.4 17 0.00059 33.8 0.0 39 77-116 23-61 (345)
455 3bni_A Putative TETR-family tr 23.3 49 0.0017 27.9 3.0 36 88-123 62-97 (229)
456 3he0_A Transcriptional regulat 23.3 46 0.0016 26.8 2.7 35 88-122 30-64 (196)
457 1nr3_A MTH0916, DNA-binding pr 23.3 12 0.00041 29.0 -0.9 25 88-112 4-28 (122)
458 2pz9_A Putative regulatory pro 23.2 25 0.00085 29.7 1.1 33 89-121 50-82 (226)
459 2q24_A Putative TETR family tr 23.1 51 0.0018 26.7 3.0 34 89-122 34-67 (194)
460 2g3b_A Putative TETR-family tr 23.0 24 0.00083 29.5 0.9 34 88-121 22-55 (208)
461 2gen_A Probable transcriptiona 23.0 54 0.0018 26.8 3.2 34 88-121 26-59 (197)
462 1rkt_A Protein YFIR; transcrip 22.9 46 0.0016 27.4 2.7 34 88-121 31-64 (205)
463 2id3_A Putative transcriptiona 22.8 53 0.0018 27.6 3.2 34 88-121 59-92 (225)
464 2hyt_A TETR-family transcripti 22.8 58 0.002 26.6 3.3 35 88-122 31-65 (197)
465 3crj_A Transcription regulator 22.8 48 0.0016 27.3 2.8 33 88-120 33-65 (199)
466 3rd3_A Probable transcriptiona 22.6 46 0.0016 26.8 2.6 33 89-121 30-62 (197)
467 1p2f_A Response regulator; DRR 22.5 43 0.0015 28.0 2.5 44 72-117 145-195 (220)
468 1g2h_A Transcriptional regulat 22.4 72 0.0025 21.1 3.1 22 91-112 35-56 (61)
469 2id6_A Transcriptional regulat 22.3 26 0.00089 29.0 1.0 34 88-121 24-57 (202)
470 3c19_A Uncharacterized protein 22.2 41 0.0014 28.4 2.1 28 150-187 38-65 (186)
471 2g7g_A RHA04620, putative tran 22.2 60 0.002 27.3 3.3 36 87-123 28-63 (213)
472 3bqy_A Putative TETR family tr 22.0 35 0.0012 28.8 1.8 36 89-124 22-57 (209)
473 3hta_A EBRA repressor; TETR fa 22.0 60 0.0021 27.1 3.3 35 89-123 48-82 (217)
474 2hqr_A Putative transcriptiona 21.9 48 0.0016 27.8 2.6 44 73-118 144-196 (223)
475 1z6r_A MLC protein; transcript 21.9 70 0.0024 30.1 4.1 29 88-116 29-57 (406)
476 3cdl_A Transcriptional regulat 21.8 54 0.0018 26.9 2.9 34 88-121 28-61 (203)
477 3anp_C Transcriptional repress 21.7 47 0.0016 27.2 2.5 33 88-120 28-60 (204)
478 2xig_A Ferric uptake regulatio 21.7 71 0.0024 25.6 3.5 28 88-115 41-73 (150)
479 2bnm_A Epoxidase; oxidoreducta 21.6 33 0.0011 28.6 1.5 26 87-112 21-46 (198)
480 2iai_A Putative transcriptiona 21.5 49 0.0017 27.9 2.6 36 88-123 49-84 (230)
481 2w53_A Repressor, SMet; antibi 21.5 52 0.0018 27.3 2.7 34 88-121 30-63 (219)
482 2w57_A Ferric uptake regulatio 21.0 67 0.0023 25.7 3.2 27 89-115 33-64 (150)
483 3mvp_A TETR/ACRR transcription 20.9 57 0.002 26.7 2.9 36 88-123 45-80 (217)
484 3g7r_A Putative transcriptiona 20.9 59 0.002 27.1 3.0 35 88-122 54-88 (221)
485 2oi8_A Putative regulatory pro 20.8 57 0.0019 27.4 2.9 34 88-121 35-68 (216)
486 2opt_A Actii protein; helical 20.8 39 0.0013 29.2 1.8 36 88-123 25-60 (234)
487 2lnb_A Z-DNA-binding protein 1 20.8 1E+02 0.0035 22.0 3.6 39 75-113 20-58 (80)
488 2dg7_A Putative transcriptiona 20.8 34 0.0012 27.9 1.4 24 89-112 27-50 (195)
489 2hyj_A Putative TETR-family tr 20.4 55 0.0019 26.9 2.6 33 88-120 31-63 (200)
490 1z0x_A Transcriptional regulat 20.2 31 0.0011 29.3 1.0 33 89-121 26-58 (220)
491 1z05_A Transcriptional regulat 20.1 66 0.0023 30.6 3.5 29 88-116 52-80 (429)
492 2zcx_A SCO7815, TETR-family tr 20.0 63 0.0022 27.4 3.0 35 88-122 42-76 (231)
No 1
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=95.68 E-value=0.014 Score=44.94 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHhccCCccccCCCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 48 RMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 48 rms~~~F~~L~~~L~~~~~~~~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
|||.+.|+.+...++ ++- ..+-++=.|+-.|.++.++|..+|+|+++|++.+.+.-....
T Consensus 4 rmT~~eFe~~~~~l~----------~~~-~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 4 RLTESQFQEAIQGLE----------VGQ-QTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHTTCC----------CCH-HHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHccCC----------hHH-HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 799999999986662 222 334455556677999999999999999999999999877653
No 2
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=95.16 E-value=0.0083 Score=46.13 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHhhh-----cccc-cchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 72 RIKIEEQLAIFMFI-----VGHN-LRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 72 ~~~~~~~l~~~L~~-----L~~~-~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
-+++.|+-++.+++ |..| .+|++||...|+|.|||+|+ ++.++.+.
T Consensus 35 lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~ 86 (101)
T 1jhg_A 35 MLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAP 86 (101)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSC
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHcc
Confidence 36777775555553 3456 99999999999999999999 76666553
No 3
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=95.09 E-value=0.039 Score=38.80 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMA 119 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 119 (390)
.+|+.++-.+.|+++ .|.++.++|..+|+|.+||.+.+++....|..
T Consensus 15 ~L~~~~r~il~l~~~-~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQL-LGLSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478888877777664 58999999999999999999999998888764
No 4
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=95.08 E-value=0.017 Score=37.43 Aligned_cols=40 Identities=10% Similarity=0.045 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHH
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
.++.+++..+... +..|.++.++|..+|||.+||.+++++
T Consensus 5 ~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 5677776555444 467899999999999999999998764
No 5
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=94.65 E-value=0.039 Score=37.75 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHhhhcccccc----hhhhhhhcccchhhhhhhhHHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLR----TRAVQELFRYSGETISRHFNNVLNA 116 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~----~~~l~~~fgis~stv~~~~~~v~~~ 116 (390)
+..+++.++.+ +.++..|.+ ..++|..||||.+|+.++++..-..
T Consensus 4 ~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~ 52 (59)
T 2glo_A 4 RIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNL 52 (59)
T ss_dssp CCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHH
T ss_pred CcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 46788999888 777878888 9999999999999999998765443
No 6
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=94.34 E-value=0.042 Score=41.69 Aligned_cols=43 Identities=5% Similarity=-0.043 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHhhhccc-ccchhhhhhhcccchhhhhhhhHHH
Q 016379 71 NRIKIEEQLAIFMFIVGH-NLRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~-~~~~~~l~~~fgis~stv~~~~~~v 113 (390)
+..|.+.+..+.-.++.. |.+...+|..||||.+|++++++..
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 457888888887777776 8999999999999999999988754
No 7
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=94.18 E-value=0.063 Score=39.90 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHhhh-cc--cccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 72 RIKIEEQLAIFMFI-VG--HNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 72 ~~~~~~~l~~~L~~-L~--~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
.+|+.++-.+.|++ |+ .|.++.++|..+|+|.+||..++.+....|.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 58888998888887 44 7899999999999999999999998887774
No 8
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=94.16 E-value=0.065 Score=40.20 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.++..++-++.|+++ .|.++.++|..+|+|.+||...+++....|....
T Consensus 37 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYY-RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 377888888877765 5899999999999999999999999988887543
No 9
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=94.14 E-value=0.049 Score=38.33 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHhhh-c--ccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 72 RIKIEEQLAIFMFI-V--GHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 72 ~~~~~~~l~~~L~~-L--~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
.+|+.++-.+.|++ + ..|.++.++|..+|+|.+||....++....|.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 57888888888887 3 47999999999999999999999988877664
No 10
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=94.04 E-value=0.074 Score=37.96 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHhhhc-c--cccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 71 NRIKIEEQLAIFMFIV-G--HNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L-~--~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
..+|+.++-.+.|++. . .|.++.++|..+|+|.+||..+..+....|.
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3588989988888874 3 6899999999999999999999999888876
No 11
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=92.65 E-value=0.042 Score=35.83 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.4
Q ss_pred hcccccchhhhhhhcccchhhhhhhhHH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
.+..|.+..++|..+|||.+||++++++
T Consensus 17 l~~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 17 LLEKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3567899999999999999999998764
No 12
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=92.56 E-value=0.14 Score=39.11 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHhhhc---ccccchhhhhhhcccchhhhhhhhHHHHHHHHH
Q 016379 72 RIKIEEQLAIFMFIV---GHNLRTRAVQELFRYSGETISRHFNNVLNAIMA 119 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L---~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 119 (390)
.+|+.++-.+.|++. ..+.++.++|..+|+|.+||..+.++.+..|-.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 488889999999885 378999999999999999999999999888863
No 13
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=92.31 E-value=0.18 Score=35.57 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
..++..++-.+.+ +..|.++.++|..+|+|.+||...+++....|.
T Consensus 10 ~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 4678877766666 378899999999999999999999998887763
No 14
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=92.30 E-value=0.13 Score=38.93 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHH
Q 016379 70 TNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 70 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v 113 (390)
.+..+.+.++.+++..+..+.+..+++.+|+||.+++.++.+.+
T Consensus 30 ~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999988765
No 15
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=92.27 E-value=0.12 Score=38.26 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNA 116 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~ 116 (390)
+..+.+.+..+.-.+ ..|.+...+|..||||.+|+++++++.-..
T Consensus 21 ~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~ 65 (87)
T 2elh_A 21 RSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNEDKL 65 (87)
T ss_dssp SSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 367887776555444 578999999999999999999999876543
No 16
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=92.15 E-value=0.25 Score=37.66 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=47.1
Q ss_pred HHHHHHHHhccCCccccCCCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 53 VFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 53 ~F~~L~~~L~~~~~~~~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
....+++.|.+.. .....++..++-.+.| +..|.++.++|...|+|.+||...+.++...|.
T Consensus 17 ~~~~~l~~l~~~~--~~~~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 17 SVAKLLEKISAGG--YGDKRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp HHHHHHHHHHCCC--CSSSSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHccCC--cccCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4455666666542 1245788888866655 358999999999999999999999999887763
No 17
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=91.75 E-value=0.19 Score=37.89 Aligned_cols=45 Identities=9% Similarity=0.191 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
.++..++-.+.|+ ..|.++.++|..+|+|.+||...+++....|.
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 5888888777774 78999999999999999999999998888774
No 18
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=91.66 E-value=0.15 Score=37.27 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
..++..++-.+.|+ ..|.++.++|..+|+|.+||...+++....|.
T Consensus 20 ~~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 35888888777773 68999999999999999999999998877663
No 19
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=91.49 E-value=0.23 Score=38.93 Aligned_cols=47 Identities=6% Similarity=0.123 Sum_probs=39.7
Q ss_pred CCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHHHh
Q 016379 73 IKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120 (390)
Q Consensus 73 ~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~ 120 (390)
+|+.++-++.|+++ .|.++.++|..+|+|.+||...+++....|...
T Consensus 23 L~~~~r~vl~l~y~-~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 23 LTDKQMNYIELYYA-DDYSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp SCHHHHHHHHHHHH-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 77778776666655 589999999999999999999999999888643
No 20
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=91.46 E-value=0.11 Score=34.63 Aligned_cols=27 Identities=7% Similarity=0.160 Sum_probs=24.1
Q ss_pred cccccchhhhhhhcccchhhhhhhhHH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
+..|.++.++|..+|+|.+||++++++
T Consensus 28 ~~~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 28 AKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 467899999999999999999998753
No 21
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=91.07 E-value=0.1 Score=31.68 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=17.8
Q ss_pred ChhHHHhhcCCCHHHHHHH
Q 016379 39 QSERCLENFRMDKKVFYKL 57 (390)
Q Consensus 39 ~d~~f~~~frms~~~F~~L 57 (390)
+|++|...|+|+|+.|..|
T Consensus 2 sd~dF~~vFgmsr~eF~~L 20 (35)
T 1wy3_A 2 SDEDFKAVFGMTRSAFANL 20 (35)
T ss_dssp CHHHHHHHHSSCHHHHHHS
T ss_pred CHHHHHHHHCCCHHHHHHC
Confidence 6899999999999999986
No 22
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=91.06 E-value=0.29 Score=38.29 Aligned_cols=47 Identities=6% Similarity=0.175 Sum_probs=39.8
Q ss_pred CCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHHHh
Q 016379 73 IKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120 (390)
Q Consensus 73 ~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~ 120 (390)
+|+.++-++.|+++ .|.++.++|..+|+|.+||...+++....|...
T Consensus 26 L~~~~r~vl~l~~~-~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 26 LTNKQRNYLELFYL-EDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp SCHHHHHHHHHHHT-SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 77777777766654 589999999999999999999999999888653
No 23
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=90.90 E-value=0.15 Score=34.66 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=29.9
Q ss_pred cccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
+..|.++.++|..+|+|.+||..++++....|.
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999998887763
No 24
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=90.30 E-value=0.3 Score=38.16 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+.++.+.+..+...+ ..|.+..++|..||+|.+||+++++++..
T Consensus 16 ~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 467888887765554 57999999999999999999999987653
No 25
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=90.21 E-value=0.13 Score=31.58 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=18.5
Q ss_pred CChhHHHhhcCCCHHHHHHH
Q 016379 38 GQSERCLENFRMDKKVFYKL 57 (390)
Q Consensus 38 ~~d~~f~~~frms~~~F~~L 57 (390)
.+|++|...|+|+|+.|..|
T Consensus 3 Lsd~dF~~vFgmsr~eF~~L 22 (37)
T 1und_A 3 LSEQDFVSVFGITRGQFAAL 22 (37)
T ss_dssp CCHHHHHHHHSSCHHHHHHS
T ss_pred CCHHHHHHHHCcCHHHHHHC
Confidence 57899999999999999986
No 26
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=90.16 E-value=0.29 Score=39.94 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+.++.+.+..+...+ ..|.+...+|..||||.+||+++++++..
T Consensus 31 ~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 31 RPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467888887776655 47899999999999999999999988753
No 27
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=89.91 E-value=0.19 Score=38.69 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHhhhcccc-------cchhhhhhhcccchhhhhhhhHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHN-------LRTRAVQELFRYSGETISRHFNNVL 114 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~-------~~~~~l~~~fgis~stv~~~~~~v~ 114 (390)
+..|.+.++.+...++..+ .+...+|..||||.+|++++++...
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4678888888777777655 7999999999999999999988753
No 28
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=89.84 E-value=0.4 Score=40.58 Aligned_cols=52 Identities=12% Similarity=0.097 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHHHhhccc
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 124 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~ 124 (390)
.+|+.++-++.|+++ .|.++.++|..+|+|.+||...+++....|-.....+
T Consensus 140 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~ 191 (194)
T 1or7_A 140 SLPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 191 (194)
T ss_dssp HSCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hCCHHHHHHhHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888878776 4899999999999999999999999999887655443
No 29
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=89.83 E-value=0.27 Score=35.28 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=36.0
Q ss_pred CCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 73 IKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 73 ~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
+++.++-.+.| + ..|.++.++|..+|+|.+||...+++....|.
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 55666666666 3 68999999999999999999999988877663
No 30
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=89.47 E-value=0.38 Score=35.92 Aligned_cols=45 Identities=11% Similarity=0.257 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 117 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l 117 (390)
..++..++-.+.|. +.|.++.++|..+|+|..||..++.++...|
T Consensus 28 ~~Lt~rE~~Vl~l~--~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 28 DVLTPRECLILQEV--EKGFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp -CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 36888777665554 3899999999999999999999999987766
No 31
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=89.21 E-value=0.24 Score=36.94 Aligned_cols=44 Identities=11% Similarity=0.257 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 117 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l 117 (390)
.++..++-.+.|+ ..|.++.++|..+|+|.+||...+++....|
T Consensus 29 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 29 MLTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GCCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 5777777777663 6899999999999999999999998887765
No 32
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=88.74 E-value=0.52 Score=41.21 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
..+|+.++-++.|+++ .|.++.++|..+|+|.+||...+++....|-...
T Consensus 186 ~~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TTSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3689999988888886 4899999999999999999999999998887543
No 33
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=88.69 E-value=0.28 Score=39.34 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v 113 (390)
..++.+++..+...+ ..|.+...+|..+|+|.+||+++++++
T Consensus 5 ~~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 457777776665544 678999999999999999999988754
No 34
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=88.28 E-value=0.48 Score=37.63 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHhhhcccccchh-hhhhhcccchhhhhhhhHHHHHHH
Q 016379 70 TNRIKIEEQLAIFMFIVGHNLRTR-AVQELFRYSGETISRHFNNVLNAI 117 (390)
Q Consensus 70 ~~~~~~~~~l~~~L~~L~~~~~~~-~l~~~fgis~stv~~~~~~v~~~l 117 (390)
++.++.+.+.-+.-.+..+|.+.. ++|..||||.+|++++++..-...
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 457899999888766656676655 999999999999999998866544
No 35
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=87.52 E-value=0.62 Score=38.33 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
..+|+.++-++.|+++. |.++.++|...|+|.+||...+.+....|.+..
T Consensus 92 ~~Lp~~~r~vl~L~~~~-g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAME-GFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TTSCTTHHHHHTTTSSS-CCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HhCCHHHHHHHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 36899899888887665 899999999999999999999999988887543
No 36
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=87.10 E-value=0.53 Score=36.20 Aligned_cols=30 Identities=20% Similarity=0.070 Sum_probs=25.7
Q ss_pred hhcccccchhhhhhhcccchhhhhhhhHHH
Q 016379 84 FIVGHNLRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 84 ~~L~~~~~~~~l~~~fgis~stv~~~~~~v 113 (390)
.+|..|.+|++++...|+|.+||+|+-+..
T Consensus 53 ~lL~~G~SyreIa~~tG~StaTIsRv~r~L 82 (107)
T 3frw_A 53 KMLTDKRTYLDISEKTGASTATISRVNRSL 82 (107)
T ss_dssp HHHHTTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCccHHHHHHHHHHH
Confidence 458889999999999999999999965543
No 37
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=86.93 E-value=0.46 Score=38.81 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=38.8
Q ss_pred cCCCCCHHHHHHHHhhh--cccccchhhhhh----hc--ccchhhhhhhhHHHHH
Q 016379 69 HTNRIKIEEQLAIFMFI--VGHNLRTRAVQE----LF--RYSGETISRHFNNVLN 115 (390)
Q Consensus 69 ~~~~~~~~~~l~~~L~~--L~~~~~~~~l~~----~f--gis~stv~~~~~~v~~ 115 (390)
.+..++.++++.+..++ -..+.+..++|. .| +||+|||+++++.--.
T Consensus 8 ~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 8 KRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp SSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 34689999999999998 334578889999 99 9999999999987433
No 38
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=85.72 E-value=0.79 Score=37.29 Aligned_cols=49 Identities=6% Similarity=0.051 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+|+.++-.+. + .-.|.++.++|..+|+|.+||...+++....|-....
T Consensus 109 ~L~~~~r~v~~-~-~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-Y-LIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-H-HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-H-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47777776666 4 3469999999999999999999999999988875443
No 39
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=85.71 E-value=0.64 Score=38.93 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMA 119 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 119 (390)
.+|+.++-++.|+++. |.++.++|..+|+|.+||...+++....|-.
T Consensus 135 ~L~~~~r~vl~l~~~~-g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFFG-DLTHRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHHS-CCSSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4788888888887764 8999999999999999999999998887754
No 40
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=85.37 E-value=0.42 Score=39.48 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
+.++.+.+..+...+ ..|.+..++|..||+|.+||++++++
T Consensus 24 ~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 457888887765554 57899999999999999999998754
No 41
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=84.92 E-value=2.7 Score=33.27 Aligned_cols=75 Identities=8% Similarity=0.040 Sum_probs=52.6
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhccCCccc--cC-CCCCHHHHHHHHhhhcccccchhhhhhhcc--cchhhhhhhhHH
Q 016379 38 GQSERCLENFRMDKKVFYKLCDILQSKGLLR--HT-NRIKIEEQLAIFMFIVGHNLRTRAVQELFR--YSGETISRHFNN 112 (390)
Q Consensus 38 ~~d~~f~~~frms~~~F~~L~~~L~~~~~~~--~~-~~~~~~~~l~~~L~~L~~~~~~~~l~~~fg--is~stv~~~~~~ 112 (390)
.+-.+.-+.+++++.++.+.+.......... .. +.++.++...+.-.......+...++..+| +|.+||++++++
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 5677888999999999999888766543211 11 346666553332222333478999999998 899999998876
No 42
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=84.47 E-value=0.87 Score=34.30 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhc-ccchhhhhhhhHHHHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELF-RYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~f-gis~stv~~~~~~v~~~l~ 118 (390)
+.+...-|++|.|-.--++.|+..+|..| |.+.|||...++++-+.+.
T Consensus 28 ~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~ 76 (94)
T 1j1v_A 28 RSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLRE 76 (94)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 35677788999998888999999999999 8999999999999988774
No 43
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=83.50 E-value=0.47 Score=37.28 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=27.7
Q ss_pred HHHhhhcccccchhhhhhhcccchhhhhhhhHH
Q 016379 80 AIFMFIVGHNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 80 ~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
.-.+..|+.|.+|++++...|+|.+||+|+-+.
T Consensus 66 ~eV~klL~~G~syreIA~~~g~S~aTIsRv~r~ 98 (119)
T 3kor_A 66 LQVAKMIKQGYTYATIEQESGASTATISRVKRS 98 (119)
T ss_dssp HHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 345667889999999999999999999995543
No 44
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=83.17 E-value=0.55 Score=33.07 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=19.8
Q ss_pred hcCChhHHHhhcCCCHHHHHHH
Q 016379 36 LNGQSERCLENFRMDKKVFYKL 57 (390)
Q Consensus 36 ~~~~d~~f~~~frms~~~F~~L 57 (390)
...+|++|...|+|+++.|..|
T Consensus 32 ~yLsdedF~~vFgmsr~eF~~L 53 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFGKL 53 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHHHS
T ss_pred hhCCHHHHHHHHCcCHHHHHHC
Confidence 3578999999999999999986
No 45
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=83.01 E-value=1.7 Score=37.75 Aligned_cols=79 Identities=9% Similarity=0.135 Sum_probs=52.6
Q ss_pred cCChhHHHhhcCCCHHHHHHHHHHhccCC-----ccccCCCCCHHHHHHHHhhhccc--------ccchhhhhhhcccch
Q 016379 37 NGQSERCLENFRMDKKVFYKLCDILQSKG-----LLRHTNRIKIEEQLAIFMFIVGH--------NLRTRAVQELFRYSG 103 (390)
Q Consensus 37 ~~~d~~f~~~frms~~~F~~L~~~L~~~~-----~~~~~~~~~~~~~l~~~L~~L~~--------~~~~~~l~~~fgis~ 103 (390)
..+-+.|...+.-.+.....+...+.... ........+++++++-+|..++. ..+..++|...|+++
T Consensus 121 ~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr 200 (232)
T 1zyb_A 121 CISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTR 200 (232)
T ss_dssp EEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCH
T ss_pred EEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCCh
Confidence 34455555555555544444444443221 11223457899999999988753 257899999999999
Q ss_pred hhhhhhhHHHHH
Q 016379 104 ETISRHFNNVLN 115 (390)
Q Consensus 104 stv~~~~~~v~~ 115 (390)
.|++|+++++.+
T Consensus 201 ~tvsR~l~~l~~ 212 (232)
T 1zyb_A 201 LNISKTLNELQD 212 (232)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 999999988754
No 46
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=82.86 E-value=1.2 Score=32.09 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=31.6
Q ss_pred HHHHHHHhhhcc--cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 76 EEQLAIFMFIVG--HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 76 ~~~l~~~L~~L~--~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+.+++-+|.-.+ .+.+..+||..+|+|++||.+.+++..+
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456666666666 3578999999999999999998877654
No 47
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=82.86 E-value=1.3 Score=33.24 Aligned_cols=29 Identities=10% Similarity=0.417 Sum_probs=25.1
Q ss_pred ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+.+..+++..+|+|++||+++++....
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45688999999999999999998877644
No 48
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=82.48 E-value=1.2 Score=34.48 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=25.3
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+.+..+++..+|+|++||++.++....
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4789999999999999999999988766
No 49
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=82.38 E-value=1.6 Score=33.32 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 70 TNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 70 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+......|+.+.......+.|+.+.+..|+||.+++.++.+.+..
T Consensus 31 ~rRWva~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~~ 76 (101)
T 2oa4_A 31 TRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAE 76 (101)
T ss_dssp CSCCCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3566777899999999999999999999999999999998877643
No 50
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=82.30 E-value=1.3 Score=30.79 Aligned_cols=40 Identities=8% Similarity=0.069 Sum_probs=29.2
Q ss_pred HHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 76 EEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 76 ~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.++++-.|.--+...+..+||..+|+|++||++.+.....
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455555543224578999999999999999998876644
No 51
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=82.17 E-value=1.1 Score=38.50 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHH
Q 016379 70 TNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 70 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
.+..+.-+.-.-..+++..|.++.++|..+|||+++|+|.+..
T Consensus 5 ake~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 5 ALQHSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp CCSSCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 3455655554444445678999999999999999999997654
No 52
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=82.00 E-value=1.1 Score=32.85 Aligned_cols=41 Identities=2% Similarity=-0.012 Sum_probs=32.3
Q ss_pred CCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 73 IKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 73 ~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+..++++.+|. ..|.+..+||..+|+|+++|.+.++....
T Consensus 16 ~~~~~~IL~lL~--~~g~sa~eLAk~LgiSk~aVr~~L~~Le~ 56 (82)
T 1oyi_A 16 AEIVCEAIKTIG--IEGATAAQLTRQLNMEKREVNKALYDLQR 56 (82)
T ss_dssp HHHHHHHHHHHS--SSTEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345566776666 45699999999999999999998876644
No 53
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=81.31 E-value=2.1 Score=32.49 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=25.1
Q ss_pred ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+.+..+++..+|+|++||+++++...+
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45579999999999999999999887754
No 54
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=81.31 E-value=0.66 Score=40.90 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=49.7
Q ss_pred ChhHHHhhcCCCHHHHHHHHHHhccCCcc-----ccCCCCCHHHHHHHHhhhccc--------------ccchhhhhhhc
Q 016379 39 QSERCLENFRMDKKVFYKLCDILQSKGLL-----RHTNRIKIEEQLAIFMFIVGH--------------NLRTRAVQELF 99 (390)
Q Consensus 39 ~d~~f~~~frms~~~F~~L~~~L~~~~~~-----~~~~~~~~~~~l~~~L~~L~~--------------~~~~~~l~~~f 99 (390)
+-+.|...+.-.+.....++..+...... ......+++++|+-+|..++. ..+..++|...
T Consensus 124 ~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~l 203 (243)
T 3la7_A 124 PIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAI 203 (243)
T ss_dssp EHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHH
T ss_pred cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHH
Confidence 44455555544444444444443322110 011246889999999887742 35789999999
Q ss_pred ccchhhhhhhhHHHHH
Q 016379 100 RYSGETISRHFNNVLN 115 (390)
Q Consensus 100 gis~stv~~~~~~v~~ 115 (390)
|+++.||+|+++++.+
T Consensus 204 G~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 204 GSTRVTVTRLLGDLRE 219 (243)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999988765
No 55
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=80.76 E-value=1.8 Score=31.22 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=23.5
Q ss_pred ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+...+.+++|+.||+|.+||.+.++...+
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678999999999999998887765543
No 56
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=80.33 E-value=1.6 Score=34.42 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=29.2
Q ss_pred HHHHHHhhhcccc-cchhhhhhhcccchhhhhhhhHHHHH
Q 016379 77 EQLAIFMFIVGHN-LRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 77 ~~l~~~L~~L~~~-~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+++..|..-..+ .+..+|+...++|++||+|.+.....
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444455444333 78999999999999999998877654
No 57
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=80.23 E-value=0.59 Score=32.75 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.2
Q ss_pred cCChhHHHhhcCCCHHHHHHH
Q 016379 37 NGQSERCLENFRMDKKVFYKL 57 (390)
Q Consensus 37 ~~~d~~f~~~frms~~~F~~L 57 (390)
..+|++|...|+|+++.|..|
T Consensus 32 yLsdedF~~vFgms~~eF~~L 52 (67)
T 1yu8_X 32 HLSDEDFKAVFGMTRSAFANL 52 (67)
T ss_dssp GSCHHHHHHHHSSCHHHHHTS
T ss_pred cCCHHHHHHHHCcCHHHHHHC
Confidence 568999999999999999876
No 58
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=80.02 E-value=1.3 Score=33.06 Aligned_cols=26 Identities=0% Similarity=-0.104 Sum_probs=23.4
Q ss_pred cchhhhhhhcccchhhhhhhhHHHHH
Q 016379 90 LRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+..+++..++++++|+++++++...
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 78999999999999999998877654
No 59
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=79.48 E-value=0.74 Score=32.07 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=19.0
Q ss_pred chhhhhhhcccchhhhhhhhH
Q 016379 91 RTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 91 ~~~~l~~~fgis~stv~~~~~ 111 (390)
+..++|...|+|.+||+++++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 467899999999999999886
No 60
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=78.90 E-value=0.6 Score=32.76 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=19.0
Q ss_pred cCChhHHHhhcCCCHHHHHHH
Q 016379 37 NGQSERCLENFRMDKKVFYKL 57 (390)
Q Consensus 37 ~~~d~~f~~~frms~~~F~~L 57 (390)
..+|++|...|+|+++.|..|
T Consensus 32 yLsdedF~~vFgmsr~eF~~L 52 (67)
T 2k6m_S 32 YLTDEDFEFALDMTRDEYNAL 52 (67)
T ss_dssp GSCHHHHHHHTSSCHHHHTTS
T ss_pred hCCHHHHHHHHCcCHHHHHHC
Confidence 568999999999999999875
No 61
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=78.45 E-value=2.3 Score=30.92 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=29.7
Q ss_pred HHHHHHHhhhcc--cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 76 EEQLAIFMFIVG--HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 76 ~~~l~~~L~~L~--~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++++-+|.-.+ ...+..+||..+|+|++||.+.+++..+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455666666444 3578999999999999999987766543
No 62
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=78.39 E-value=2.2 Score=32.55 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
.+...-|++|.|-.=-++.|+..+|..||...|||...++++-+.+.
T Consensus 33 ~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~ 79 (101)
T 3pvv_A 33 ALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMA 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 46667789998887778999999999999999999999999988775
No 63
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=77.52 E-value=1.6 Score=37.34 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHhhhccc-------ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGH-------NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~-------~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+++++++-+|..++. ..+..++|...|++++|++|+++++.+
T Consensus 145 ~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 195 (220)
T 3dv8_A 145 WKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQV 195 (220)
T ss_dssp HSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 47889999999988764 568899999999999999999988765
No 64
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=77.20 E-value=3 Score=33.13 Aligned_cols=43 Identities=7% Similarity=0.067 Sum_probs=28.9
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+- ++..|+. ..+.+..+++..+|++++|+++.+++..+
T Consensus 34 ~lt~~~~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 34 DLTPPDVHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4555444 4444443 34789999999999999999998887755
No 65
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=77.18 E-value=2.1 Score=34.05 Aligned_cols=43 Identities=9% Similarity=0.197 Sum_probs=31.7
Q ss_pred CCH-HHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 73 IKI-EEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 73 ~~~-~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++. +.+++..|+.-..+.+..+++..+|++++|++++++...+
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444 4455556632346789999999999999999998876644
No 66
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=76.72 E-value=2.1 Score=36.22 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHhhhccc-------------ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGH-------------NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~-------------~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+++++++.+|..++. ..+..++|...|+|+.|++|+++++.+
T Consensus 137 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 193 (210)
T 3ryp_A 137 FLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 193 (210)
T ss_dssp HSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 46889999999988753 246789999999999999999987755
No 67
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=76.04 E-value=2.5 Score=33.56 Aligned_cols=39 Identities=3% Similarity=0.070 Sum_probs=29.7
Q ss_pred HHHHHHhhhc---ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 77 EQLAIFMFIV---GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 77 ~~l~~~L~~L---~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+++..|+.+ ..+.+..++|..+|++++||++.+++..+
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~ 57 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEE 57 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 4445555554 34578999999999999999998877654
No 68
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=76.00 E-value=2.8 Score=36.95 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHH
Q 016379 70 TNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 117 (390)
Q Consensus 70 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l 117 (390)
...+++.++-.+.| ++.|.+..++|...|||..||..+++++..-|
T Consensus 173 ~~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 173 NVRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp GCCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 35788877765555 57999999999999999999999999887765
No 69
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=75.88 E-value=5.5 Score=35.76 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
..++..++-.+.|. +.|.++.++|...|||..||..+++++..-|.
T Consensus 196 ~~Lt~re~~vl~~~--~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHWM--SRGKTNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHHH--HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 46888777666554 68999999999999999999999998877663
No 70
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=75.68 E-value=0.93 Score=31.75 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=19.9
Q ss_pred cchhhhhhhcccchhhhhhhhH
Q 016379 90 LRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~~ 111 (390)
.+..+||...|+|.+||+++++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 4689999999999999999875
No 71
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=75.53 E-value=2.5 Score=34.83 Aligned_cols=40 Identities=5% Similarity=0.094 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHhh---hc-----ccccchhhhhhhcccchhhhhhhhH
Q 016379 72 RIKIEEQLAIFMF---IV-----GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 72 ~~~~~~~l~~~L~---~L-----~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
.++.+.+.++.+. -+ ..|.+..++|...|||++|++++.+
T Consensus 23 ~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp TSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3667666665432 21 1267999999999999999999888
No 72
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=75.16 E-value=3.3 Score=32.84 Aligned_cols=42 Identities=2% Similarity=-0.041 Sum_probs=32.2
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+. ++..|+ ..+.+..+++..+|++++||++.+++...
T Consensus 34 ~l~~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 34 NLSYLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp TCCHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3555444 445554 67789999999999999999998877654
No 73
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=75.10 E-value=3 Score=34.39 Aligned_cols=44 Identities=2% Similarity=0.027 Sum_probs=33.1
Q ss_pred CCCHHH-HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEE-QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~-~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+ .++.+|+....+.+..+|+..++++++||++++++..+
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 465544 34455554456789999999999999999998877654
No 74
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=74.93 E-value=3.1 Score=30.99 Aligned_cols=38 Identities=8% Similarity=0.189 Sum_probs=28.7
Q ss_pred HHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 77 EQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 77 ~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+++..|.. ..+.+..+++..+|++++||++.++...+
T Consensus 23 ~~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 23 VRIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp HHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444432 34688999999999999999998887754
No 75
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=74.93 E-value=2.4 Score=29.84 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=34.2
Q ss_pred CCHHHHHHHHhhhcccc-cchhhhhhhcccchhhhhhhhHH
Q 016379 73 IKIEEQLAIFMFIVGHN-LRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 73 ~~~~~~l~~~L~~L~~~-~~~~~l~~~fgis~stv~~~~~~ 112 (390)
---+++|..++..+.+| .|....|..|||..+|+..-++.
T Consensus 13 ~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~ 53 (70)
T 2cob_A 13 QYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKE 53 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHh
Confidence 34578899999999999 89999999999999999865544
No 76
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=74.89 E-value=2.3 Score=31.08 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=27.7
Q ss_pred HHHhhhcccccchhhhhhhcccchhhhhhhhHH----HHHHHHHh
Q 016379 80 AIFMFIVGHNLRTRAVQELFRYSGETISRHFNN----VLNAIMAI 120 (390)
Q Consensus 80 ~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~----v~~~l~~~ 120 (390)
...|..|+. ..+..+|+..|++.||+||+-+. +|..|..+
T Consensus 16 s~iL~~La~-~gQ~~vAe~~GvdeStISR~k~~~~~~~~~lLa~L 59 (83)
T 1zs4_A 16 SALLNKIAM-LGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVL 59 (83)
T ss_dssp HHHHHHHHH-HCHHHHHHHHTSCHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhhHHHHHHhCCCHHHHhhhhhhHHHHHHHHHHHh
Confidence 344455553 56899999999999999996444 45554443
No 77
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=74.70 E-value=2.8 Score=34.08 Aligned_cols=44 Identities=2% Similarity=-0.008 Sum_probs=33.3
Q ss_pred CCCHHH-HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEE-QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~-~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+ .++..|...+.+.+..++|..++++++|+++++++..+
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 455544 45556665666778899999999999999998887654
No 78
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=74.49 E-value=0.63 Score=40.66 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 117 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l 117 (390)
.+|+.++-++.|+++ .|.++.++|..+|+|.+||...+++....|
T Consensus 198 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 198 ELDERERLIVYLRYY-KDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp ----------------------------------------------
T ss_pred hCCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 688888888888776 589999999999999999999888776543
No 79
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=74.47 E-value=2.6 Score=35.53 Aligned_cols=44 Identities=9% Similarity=0.214 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHhhhccc-------------ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGH-------------NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~-------------~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+++++++-+|..|+. ..+..++|...|+|+.|++|+++++.+
T Consensus 134 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 190 (207)
T 2oz6_A 134 FLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEE 190 (207)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46788999988876653 247789999999999999999988754
No 80
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=74.46 E-value=1.9 Score=32.14 Aligned_cols=29 Identities=7% Similarity=0.145 Sum_probs=25.3
Q ss_pred ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+.+..+++..+|+|++||++.++...+
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~~ 69 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLEA 69 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55688999999999999999998887655
No 81
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=74.28 E-value=2.6 Score=37.71 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
..+|..++-.+.|. ..|.++.++|+..|+|.+||...+++....|.
T Consensus 196 ~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 46899999888886 48999999999999999999999998887763
No 82
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=74.20 E-value=3.8 Score=35.14 Aligned_cols=44 Identities=9% Similarity=0.197 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHhhhcccc-------------cchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGHN-------------LRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~-------------~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+++++++-+|..++.. .+..++|...|++++|++|+++++.+
T Consensus 157 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~ 213 (230)
T 3iwz_A 157 FLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQA 213 (230)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 468999999999987532 46899999999999999999987755
No 83
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=74.15 E-value=3 Score=29.87 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=32.7
Q ss_pred CCCH-HHHHHHHhhhcccccchhhhhhhcc----cchhhhhhhhHHHHH
Q 016379 72 RIKI-EEQLAIFMFIVGHNLRTRAVQELFR----YSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~-~~~l~~~L~~L~~~~~~~~l~~~fg----is~stv~~~~~~v~~ 115 (390)
.++. +..++.+|+. ..+.+..+|+..++ ++.+||++++++..+
T Consensus 6 ~lt~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~ 53 (82)
T 1p6r_A 6 QISDAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK 53 (82)
T ss_dssp CCCHHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 4555 4456667776 55789999999997 689999998887765
No 84
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=74.14 E-value=2 Score=31.16 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=21.6
Q ss_pred ccchhhhhhhcccchhhhhhhhH
Q 016379 89 NLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~ 111 (390)
|.++..+|...|||++|++.+++
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred hcCHHHHHHHcCCCHHHHHHHHc
Confidence 99999999999999999998775
No 85
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=73.84 E-value=2.4 Score=31.28 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=24.1
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+.+..+++..+|+|++|+++.++...+
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 689999999999999999999887654
No 86
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=73.82 E-value=4.5 Score=31.65 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=24.8
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+.+..+++..+|+|++|+++.++...+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678999999999999999999887765
No 87
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=73.74 E-value=1.7 Score=38.20 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHhhhccc--------------ccchhhhhhhcccchhhhhhhhHHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGH--------------NLRTRAVQELFRYSGETISRHFNNVLNA 116 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~--------------~~~~~~l~~~fgis~stv~~~~~~v~~~ 116 (390)
...+++++++-+|..++. ..+..++|...|+|+.|++|+++++.+.
T Consensus 145 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 145 NTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp TTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 357899999999987642 3578999999999999999999887663
No 88
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=73.68 E-value=5.1 Score=34.59 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHhhhccc----------ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGH----------NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~----------~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
...+++++++-+|..++. ..+..++|...|+++.|++|+++++.+
T Consensus 150 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~ 204 (237)
T 3fx3_A 150 KAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKA 204 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 467899999999998753 234789999999999999998887644
No 89
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=73.65 E-value=3.6 Score=29.47 Aligned_cols=28 Identities=7% Similarity=-0.032 Sum_probs=24.2
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+.+..++++.+|+|++||++.++...+
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~ 40 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEK 40 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999998887754
No 90
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=73.45 E-value=1.6 Score=29.85 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.8
Q ss_pred hcccccchhhhhhhcccchhhhhhhh
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHF 110 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~ 110 (390)
....| ++..+|...|+|+++|++++
T Consensus 10 ~~~~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 10 LEEHG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp HHHTC-CHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcC-CHHHHHHHHCcCHHHHHHHH
Confidence 34456 99999999999999999987
No 91
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=73.45 E-value=2.2 Score=36.78 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=51.4
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhccCCcc-----ccCCCCCHHHHHHHHhhhcc--------------cccchhhhhhh
Q 016379 38 GQSERCLENFRMDKKVFYKLCDILQSKGLL-----RHTNRIKIEEQLAIFMFIVG--------------HNLRTRAVQEL 98 (390)
Q Consensus 38 ~~d~~f~~~frms~~~F~~L~~~L~~~~~~-----~~~~~~~~~~~l~~~L~~L~--------------~~~~~~~l~~~ 98 (390)
.+-+.|...+.-.+.....+...+...... ......+++++++-+|..++ ...+..++|..
T Consensus 107 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~ 186 (227)
T 3d0s_A 107 MDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQL 186 (227)
T ss_dssp EEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHH
T ss_pred EeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHH
Confidence 445566666555555444444444332110 11124688999999888764 13578899999
Q ss_pred cccchhhhhhhhHHHHH
Q 016379 99 FRYSGETISRHFNNVLN 115 (390)
Q Consensus 99 fgis~stv~~~~~~v~~ 115 (390)
.|+|+.|++|+++++.+
T Consensus 187 lg~sr~tvsR~l~~l~~ 203 (227)
T 3d0s_A 187 VGASRETVNKALADFAH 203 (227)
T ss_dssp HTSCHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHH
Confidence 99999999999988754
No 92
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=73.37 E-value=3 Score=40.53 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHhhh-cc--cccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 72 RIKIEEQLAIFMFI-VG--HNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 72 ~~~~~~~l~~~L~~-L~--~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
.++..++-.+.|+| |. .+.++.+||..+|||.+||..+.++.+..|-
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 57888888888888 43 6799999999999999999999999888876
No 93
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=73.35 E-value=3.9 Score=32.48 Aligned_cols=43 Identities=7% Similarity=0.066 Sum_probs=31.4
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+- ++..|+. ..+.+..+++..++++++|+++.+++...
T Consensus 28 ~lt~~q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 28 DLNYNLFAVLYTLAT-EGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp TCCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555443 3344433 34689999999999999999998887654
No 94
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=73.35 E-value=2.7 Score=31.06 Aligned_cols=27 Identities=7% Similarity=-0.008 Sum_probs=24.3
Q ss_pred ccchhhhhhhcccchhh-hhhhhHHHHH
Q 016379 89 NLRTRAVQELFRYSGET-ISRHFNNVLN 115 (390)
Q Consensus 89 ~~~~~~l~~~fgis~st-v~~~~~~v~~ 115 (390)
+.+..+++..++++++| +++.+++..+
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~ 57 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIR 57 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 58999999999999999 9999887755
No 95
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=73.10 E-value=0.96 Score=33.47 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.7
Q ss_pred hcCChhHHHhhcCCCHHHHHHH
Q 016379 36 LNGQSERCLENFRMDKKVFYKL 57 (390)
Q Consensus 36 ~~~~d~~f~~~frms~~~F~~L 57 (390)
...+|++|...|+|+|+.|..|
T Consensus 46 ~YLSdedF~~vFgMsr~eF~~L 67 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFDRL 67 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHTTS
T ss_pred hcCCHHHHHHHHCcCHHHHHHC
Confidence 3578999999999999999876
No 96
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=72.86 E-value=1.9 Score=36.96 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHhhhccc--------------ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGH--------------NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~--------------~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+++++++-+|..++. ..+..++|...|+|+.|++|+++++.+
T Consensus 136 ~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 193 (220)
T 2fmy_A 136 FKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKK 193 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 45788999999887753 467899999999999999999988754
No 97
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=72.80 E-value=1.8 Score=32.41 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=22.9
Q ss_pred cccchhhhhhhcccchhhhhhhhHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v 113 (390)
.+.+..++|..+|+|.+||++.++.-
T Consensus 19 ~~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 19 TKKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HCCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 45789999999999999999999763
No 98
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=72.72 E-value=4 Score=31.97 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=31.4
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+. ++..|+. ..+.+..+++..+|++++||++.+++...
T Consensus 26 ~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~~ 69 (138)
T 3bpv_A 26 NLTDAQVACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLEE 69 (138)
T ss_dssp TCCHHHHHHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555443 4444443 45789999999999999999998877654
No 99
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=72.60 E-value=3.5 Score=30.61 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=29.1
Q ss_pred HHHHHHHhhhcccccchhhh----hhhcccchhhhhhhhHHHHH
Q 016379 76 EEQLAIFMFIVGHNLRTRAV----QELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 76 ~~~l~~~L~~L~~~~~~~~l----~~~fgis~stv~~~~~~v~~ 115 (390)
+..++..|+. ..+.+..++ +..++++++|+++.+++..+
T Consensus 10 q~~iL~~l~~-~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 10 EAIVLAYLYD-NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp HHHHHHHHTT-CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444445543 346788889 99999999999998887765
No 100
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=72.57 E-value=3.2 Score=36.41 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
..++..++-.+.| ++.|.++.++|...|||.+||..++++..+-|.
T Consensus 174 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4688888876655 578999999999999999999999998887763
No 101
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=72.55 E-value=3.3 Score=34.96 Aligned_cols=44 Identities=7% Similarity=0.175 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHhhhccc-------------ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGH-------------NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~-------------~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+++++++-+|..++. ..+..++|...|+|+.||+|+++++.+
T Consensus 116 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 172 (202)
T 2zcw_A 116 TQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAR 172 (202)
T ss_dssp HCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46889999999988753 257899999999999999999998765
No 102
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=72.54 E-value=3.5 Score=32.32 Aligned_cols=44 Identities=9% Similarity=0.178 Sum_probs=32.0
Q ss_pred CCCHHH-HHHHHhhhc-ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEE-QLAIFMFIV-GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~-~l~~~L~~L-~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+ .++.+|+.- ..+.+..+++..++++++|+++.+++...
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455544 345555442 15689999999999999999998877654
No 103
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=72.38 E-value=3.6 Score=31.07 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=24.4
Q ss_pred HHhhhcccccchhhhhhhcccchhhhhhhhHHH
Q 016379 81 IFMFIVGHNLRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 81 ~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v 113 (390)
..|..|+ +.+++.+|...||+.||+||+-+..
T Consensus 16 ~il~~la-~~gq~~vA~~iGV~~StISR~k~~~ 47 (97)
T 1xwr_A 16 ALLNKIA-MLGTEKTAEAVGVDKSQISRWKRDW 47 (97)
T ss_dssp HHHHHHH-HHCHHHHHHHHTCCTTTHHHHHHHH
T ss_pred HHHHHHH-HHhHHHHHHHhCCCHHHHHHHHhhh
Confidence 3355555 5778999999999999999954444
No 104
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=72.38 E-value=3.4 Score=32.71 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=32.1
Q ss_pred CCH-HHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 73 IKI-EEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 73 ~~~-~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++ +..++..|..-..+.+..+++..+|++++||++.+++...
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 444 4445555534456789999999999999999998877654
No 105
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=72.13 E-value=3.8 Score=35.92 Aligned_cols=46 Identities=2% Similarity=0.029 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
..++..++-.+.| ++.|.++.++|...|+|.+||..++++....|.
T Consensus 172 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 172 AWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4688888866655 478999999999999999999999998887763
No 106
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=71.60 E-value=3.8 Score=32.21 Aligned_cols=43 Identities=0% Similarity=-0.042 Sum_probs=30.9
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+. ++..|+. ..+.+..+++..++++++||++++++...
T Consensus 33 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQ-QGEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp TCCHHHHHHHHHHHH-HCSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 3555443 4444443 34689999999999999999998877654
No 107
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=71.52 E-value=2.8 Score=31.21 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHhhhc-c-cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 71 NRIKIEEQLAIFMFIV-G-HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L-~-~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+++.++.+.+-+.+- + .|...++|+...+++.+||.+++++...
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 62 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4677766655544443 2 3899999999999999999998887744
No 108
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=71.33 E-value=1.8 Score=34.98 Aligned_cols=33 Identities=9% Similarity=-0.062 Sum_probs=28.5
Q ss_pred HHhhhcccccchhhhhhhccc-chhhhhhhhHHH
Q 016379 81 IFMFIVGHNLRTRAVQELFRY-SGETISRHFNNV 113 (390)
Q Consensus 81 ~~L~~L~~~~~~~~l~~~fgi-s~stv~~~~~~v 113 (390)
-.+.+++.|.+.+.++..+|| |.+|+++++++-
T Consensus 20 ~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 20 DICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp HHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred HHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 355567789999999999999 999999998873
No 109
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=71.32 E-value=4.4 Score=32.26 Aligned_cols=43 Identities=9% Similarity=0.209 Sum_probs=32.4
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+- ++..|+. ..+.+..+++..++++++||++.+++..+
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp TCCHHHHHHHHHHHH-SSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666554 4444443 33789999999999999999998887755
No 110
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=71.30 E-value=4.2 Score=31.86 Aligned_cols=43 Identities=7% Similarity=-0.054 Sum_probs=31.9
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+. ++..|+.- .+.+..+++..+|++++|+++.+++..+
T Consensus 35 ~l~~~~~~iL~~l~~~-~~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 35 GLTPTQWAALVRLGET-GPCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp CCCHHHHHHHHHHHHH-SSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666443 44444433 3789999999999999999998877654
No 111
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=71.28 E-value=4.6 Score=32.89 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=31.4
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+- ++..|+. ..+.+..+|+..+|++++||++++++...
T Consensus 43 glt~~q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 43 EISLPQFTALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp TCCHHHHHHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555443 3344443 34789999999999999999998887654
No 112
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=70.77 E-value=2.7 Score=31.21 Aligned_cols=28 Identities=14% Similarity=0.219 Sum_probs=24.5
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+.+..+++..+|+|++||++.++...+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678999999999999999998877655
No 113
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=70.73 E-value=4.4 Score=31.71 Aligned_cols=43 Identities=5% Similarity=0.011 Sum_probs=31.5
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+. ++..|+. ..+.+..+++..++++++|+++.+++...
T Consensus 30 ~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 30 DISYVQFGVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 4555443 4444433 44689999999999999999998877654
No 114
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=70.70 E-value=5.3 Score=32.14 Aligned_cols=44 Identities=5% Similarity=0.152 Sum_probs=31.4
Q ss_pred CCCHHHH-HHHHhhhccc-ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGH-NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~-~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+- ++..|+.-.. +.+..+|+...+++++|+++++++..+
T Consensus 32 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 32 GLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp TCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3555443 4444443333 478999999999999999998887654
No 115
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=70.67 E-value=4.2 Score=32.12 Aligned_cols=43 Identities=7% Similarity=0.109 Sum_probs=30.8
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+. ++..|+. ..+.+..+++..++++++||++.+++...
T Consensus 34 ~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 77 (142)
T 2bv6_A 34 NLTYPQFLVLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRMEQ 77 (142)
T ss_dssp TCCHHHHHHHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3555443 3334433 34689999999999999999998877654
No 116
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=70.62 E-value=4.6 Score=32.30 Aligned_cols=43 Identities=7% Similarity=0.149 Sum_probs=31.8
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+- ++..|+. ..+.+..+++..++++++||++++++..+
T Consensus 38 ~lt~~q~~iL~~l~~-~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 38 GITYSQYLVMLTLWE-ENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp TCCHHHHHHHHHHHH-SSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555443 3444433 46789999999999999999998887755
No 117
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=70.40 E-value=3.4 Score=34.64 Aligned_cols=46 Identities=7% Similarity=0.236 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHhhhccc-------------ccchhhhhhhcccchhhhhhhhHHHHHH
Q 016379 71 NRIKIEEQLAIFMFIVGH-------------NLRTRAVQELFRYSGETISRHFNNVLNA 116 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~-------------~~~~~~l~~~fgis~stv~~~~~~v~~~ 116 (390)
...+++++++-+|..|+. ..+..++|...|+|+.|++|+++++.+.
T Consensus 108 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 108 QTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp TSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 357899999999988652 2468899999999999999999988653
No 118
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=70.30 E-value=4.4 Score=32.47 Aligned_cols=43 Identities=5% Similarity=0.144 Sum_probs=31.8
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+. ++..|+. ..+.+..+++..++++++||++++++...
T Consensus 44 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 87 (153)
T 2pex_A 44 DLTYPQYLVMLVLWE-TDERSVSEIGERLYLDSATLTPLLKRLQA 87 (153)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 4665444 4444443 45789999999999999999998877654
No 119
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=70.21 E-value=4.5 Score=31.75 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=32.2
Q ss_pred CCCHH-HHHHHHhhhcc-cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIE-EQLAIFMFIVG-HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~-~~l~~~L~~L~-~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++. ..++..|+.-+ .+.+..+++..++++++|+++++++..+
T Consensus 28 ~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 28 DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp TCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 35543 33445555443 4789999999999999999998887654
No 120
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=70.11 E-value=4.9 Score=31.54 Aligned_cols=44 Identities=7% Similarity=0.074 Sum_probs=32.3
Q ss_pred CCCHHH-HHHHHhhhccc-ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEE-QLAIFMFIVGH-NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~-~l~~~L~~L~~-~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+ .++..|+.-.. +.+..+++..++++++||++.+++..+
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 355543 45555555433 689999999999999999998877654
No 121
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=70.04 E-value=4.5 Score=32.82 Aligned_cols=43 Identities=9% Similarity=0.082 Sum_probs=31.6
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+. ++..|+. ..+.+..+++..+|++++||++++++..+
T Consensus 49 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 92 (162)
T 3cjn_A 49 GLSTAKMRALAILSA-KDGLPIGTLGIFAVVEQSTLSRALDGLQA 92 (162)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 4555443 4444443 44789999999999999999998877654
No 122
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=69.99 E-value=5 Score=32.84 Aligned_cols=44 Identities=9% Similarity=0.147 Sum_probs=29.8
Q ss_pred CCCHHH-HHHHHhhhc-ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEE-QLAIFMFIV-GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~-~l~~~L~~L-~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+ .++.+|+.. ..+.+..+|+..++++++||++++++...
T Consensus 43 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 43 ELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp TCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 355544 345555554 35899999999999999999998877654
No 123
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=69.98 E-value=3.2 Score=31.63 Aligned_cols=38 Identities=11% Similarity=0.014 Sum_probs=29.2
Q ss_pred HHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHH
Q 016379 77 EQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNA 116 (390)
Q Consensus 77 ~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~ 116 (390)
.+++..|. ..+.+..+++..+|+|++||++.++...++
T Consensus 28 ~~IL~~L~--~~~~s~~eLa~~lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 28 LQILDLLA--QGERAVEAIATATGMNLTTASANLQALKSG 65 (108)
T ss_dssp HHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444443 356789999999999999999998877653
No 124
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=69.73 E-value=3 Score=35.79 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHhhhccc--------------ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGH--------------NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~--------------~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+++++++-+|..++. ..+..++|...|+|+.|++|+++++.+
T Consensus 132 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~ 189 (222)
T 1ft9_A 132 FHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIK 189 (222)
T ss_dssp THHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 46788999999987762 257899999999999999999988765
No 125
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=69.72 E-value=4.3 Score=32.15 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=32.0
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+- ++..|+. ..+.+..+++..++++++|+++++++..+
T Consensus 34 ~lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 34 DVTPEQWSVLEGIEA-NEPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp SSCHHHHHHHHHHHH-HSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 4666554 3444433 36789999999999999999998877654
No 126
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=69.69 E-value=5 Score=28.70 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=24.5
Q ss_pred cccchhhhhhhc-----ccchhhhhhhhHHHHHH
Q 016379 88 HNLRTRAVQELF-----RYSGETISRHFNNVLNA 116 (390)
Q Consensus 88 ~~~~~~~l~~~f-----gis~stv~~~~~~v~~~ 116 (390)
...+..+|+..+ ++|.+||+|.++.+.+.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 357899999999 99999999988877653
No 127
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=69.43 E-value=3.6 Score=39.87 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHhhh-cc--cccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 72 RIKIEEQLAIFMFI-VG--HNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 72 ~~~~~~~l~~~L~~-L~--~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
.++..++-.+.|+| |. .+.++.++|..+|||.+||..+.++.+..|-
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 57777888888887 44 6789999999999999999999999988886
No 128
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=69.33 E-value=4 Score=32.30 Aligned_cols=43 Identities=7% Similarity=0.078 Sum_probs=31.3
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+- ++..|+. ..+.+..+++..++++++|+++++++..+
T Consensus 33 glt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 33 DLTYTGYIVLMAIEN-DEKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp TCCHHHHHHHHHSCT-TCEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4555443 3334432 44689999999999999999998887754
No 129
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=69.33 E-value=4 Score=32.51 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=24.5
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+.+..++|..+|+|++||++.+++...
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5689999999999999999998877644
No 130
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=69.18 E-value=3.4 Score=33.08 Aligned_cols=44 Identities=7% Similarity=0.167 Sum_probs=31.0
Q ss_pred CCCHHH-HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEE-QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~-~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+ .++..|+.-..+.+..+++..++++++|+++++++..+
T Consensus 36 glt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp TCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 355433 34444444444569999999999999999998877643
No 131
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=68.94 E-value=4.9 Score=32.08 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=31.3
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+. ++..|+. ..+.+..+++..+|++++|+++.+++...
T Consensus 37 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le~ 80 (152)
T 3bj6_A 37 GVTVGQRAILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQR 80 (152)
T ss_dssp TCCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555443 4444443 34789999999999999999998877654
No 132
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=68.91 E-value=1.3 Score=37.98 Aligned_cols=58 Identities=14% Similarity=0.152 Sum_probs=1.1
Q ss_pred CCCHHHHHHHHhhhccc-------ccchhhhhhhcccchhhhhhhhHHHHHH-HHHhhccccCCCC
Q 016379 72 RIKIEEQLAIFMFIVGH-------NLRTRAVQELFRYSGETISRHFNNVLNA-IMAISLDFFQPPG 129 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~-------~~~~~~l~~~fgis~stv~~~~~~v~~~-l~~~~~~~i~~P~ 129 (390)
..+++++++.+|..++. ..+..++|...|+|+.|++|+++++.+. +.+.....|...+
T Consensus 140 ~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~~~~i~I~d 205 (213)
T 1o5l_A 140 TKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELEREGYIEKHGRRIKVLK 205 (213)
T ss_dssp CC----------------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEEcCCEEEEec
Confidence 46778899888887762 4678999999999999999999998763 4444444444443
No 133
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=68.85 E-value=4.7 Score=31.98 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=32.3
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNA 116 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~ 116 (390)
+++..+. ++..|+. ..+.+..+++..++++++||++.+++....
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 37 NITYPQYLALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 4665443 4444443 347899999999999999999988877653
No 134
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=68.56 E-value=4.7 Score=30.64 Aligned_cols=38 Identities=5% Similarity=0.177 Sum_probs=27.8
Q ss_pred HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 78 QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 78 ~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++-.|..-+...+..+++..+|+|++||++.+.....
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33333333343578999999999999999998877655
No 135
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=68.44 E-value=4.9 Score=31.70 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=31.6
Q ss_pred CCCHHH-HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEE-QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~-~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+ .++..|+. ..+.+..+++..++++++|+++.+++...
T Consensus 30 ~l~~~~~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 30 GITPAQFDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp TCCHHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 455544 34444444 44789999999999999999998877654
No 136
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=68.35 E-value=5 Score=31.48 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=30.4
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+- ++..|+. ..+.+..+++..+++|++||++.+++..+
T Consensus 28 ~l~~~~~~iL~~l~~-~~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 28 GISLTRYSILQTLLK-DAPLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp SSCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3554333 3334433 34689999999999999999998877654
No 137
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=68.33 E-value=4.9 Score=31.96 Aligned_cols=43 Identities=7% Similarity=0.059 Sum_probs=31.8
Q ss_pred CCCHHH-HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEE-QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~-~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+ .++..|+. ..+.+..+++..++++++||++.+++...
T Consensus 39 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 39 PITPPQFVALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp SSCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 456544 34445544 34789999999999999999998877654
No 138
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=68.32 E-value=5.1 Score=31.34 Aligned_cols=43 Identities=5% Similarity=0.099 Sum_probs=31.1
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+. ++..|+. ..+.+..+++..+|++++|+++++++...
T Consensus 31 ~lt~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 31 DITAAQFKVLCSIRC-AACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp TSCHHHHHHHHHHHH-HSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-cCCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 4555444 3444433 34679999999999999999998877654
No 139
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=68.23 E-value=5.1 Score=32.07 Aligned_cols=43 Identities=5% Similarity=0.244 Sum_probs=31.9
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+. ++..|+. ..+.+..+++...+++++||++++++...
T Consensus 38 ~lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 38 GLTIQQLAMINVIYS-TPGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp TCCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4665443 4445544 34689999999999999999998877655
No 140
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=67.95 E-value=3.5 Score=30.91 Aligned_cols=29 Identities=7% Similarity=0.142 Sum_probs=24.9
Q ss_pred ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+.+..+++..+|+|++||++.++....
T Consensus 34 ~~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 34 EGEFSVGELEQQIGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp TCCBCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34579999999999999999998877655
No 141
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=67.84 E-value=3.9 Score=32.34 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=30.7
Q ss_pred CCHH-HHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 73 IKIE-EQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 73 ~~~~-~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++.. ..++..|+. ..+.+..+++..++++++||++.+++...
T Consensus 27 lt~~~~~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le~ 69 (144)
T 1lj9_A 27 LTRGQYLYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLEE 69 (144)
T ss_dssp CTTTHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 4443 344445544 34689999999999999999998877654
No 142
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=67.72 E-value=5.7 Score=31.41 Aligned_cols=42 Identities=5% Similarity=0.224 Sum_probs=31.2
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+. ++..|+. ++.+..+++..+|++++||++++++...
T Consensus 35 ~lt~~~~~iL~~l~~--~~~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 35 ALTNTQEHILMLLSE--ESLTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp CCCHHHHHHHHHHTT--CCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5676554 3344433 3499999999999999999998877654
No 143
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=67.66 E-value=2.3 Score=29.54 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=19.5
Q ss_pred cchhhhhhhcccchhhhhhhh
Q 016379 90 LRTRAVQELFRYSGETISRHF 110 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~ 110 (390)
.++..+|+.+|+|+++||+++
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHH
Confidence 399999999999999999976
No 144
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=67.46 E-value=4 Score=36.13 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhhhccc-------------ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGH-------------NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~-------------~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+++++|+-+|..|+. ..+..++|...|+++.|++|+++++.+
T Consensus 187 ~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 187 FLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp HCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46889999998887753 246789999999999999999988765
No 145
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=67.45 E-value=5.9 Score=31.76 Aligned_cols=43 Identities=7% Similarity=0.117 Sum_probs=30.6
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+- ++..|+ -..+.+..+++..+|++++||++++++...
T Consensus 40 ~lt~~~~~iL~~l~-~~~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 40 GLRVPEWRVLACLV-DNDAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp TCCHHHHHHHHHHS-SCSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555443 333333 234689999999999999999998877654
No 146
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=66.97 E-value=5.8 Score=32.04 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=30.6
Q ss_pred CCHHH-HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 73 IKIEE-QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 73 ~~~~~-~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++..+ .++..|+. ..+.+..+++..++++++||++++++...
T Consensus 47 lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 89 (162)
T 2fa5_A 47 MAIPEWRVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLE 89 (162)
T ss_dssp CCHHHHHHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44433 34444444 44788999999999999999998877655
No 147
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=66.89 E-value=4.8 Score=32.28 Aligned_cols=43 Identities=5% Similarity=0.035 Sum_probs=31.5
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+. ++..|+. ..+.+..+++..++++++||++.+++...
T Consensus 34 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 77 (155)
T 1s3j_A 34 GVTPAQLFVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLEQ 77 (155)
T ss_dssp TCCHHHHHHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555444 4444443 34689999999999999999998877654
No 148
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=66.68 E-value=3.6 Score=35.20 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=36.1
Q ss_pred CCHHHHHHHHhhhccc-----------ccchhhhhhhcccchhhhhhhhHHHHHH
Q 016379 73 IKIEEQLAIFMFIVGH-----------NLRTRAVQELFRYSGETISRHFNNVLNA 116 (390)
Q Consensus 73 ~~~~~~l~~~L~~L~~-----------~~~~~~l~~~fgis~stv~~~~~~v~~~ 116 (390)
.+++++++-+|..++. ..+..++|...|+|+.|++|+++++.+.
T Consensus 151 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 151 KNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp HHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 5778999988866543 3578999999999999999999988764
No 149
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=66.65 E-value=4.3 Score=34.54 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHhhhcccc--cchhhhhhhcccchhhhhhhhHHH
Q 016379 71 NRIKIEEQLAIFMFIVGHN--LRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~--~~~~~l~~~fgis~stv~~~~~~v 113 (390)
+.+|.-|+=.-.+..|..| .++.++|..+|||++.|+|+++-.
T Consensus 22 rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 22 RPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp -CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 6799999988888888776 799999999999999999988643
No 150
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=66.62 E-value=3.1 Score=35.30 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhhhcc-------cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVG-------HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~-------~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+++++++-+|..++ ...+..++|...|+++.|++|+++++.+
T Consensus 139 ~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 189 (216)
T 4ev0_A 139 FEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAE 189 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3567899999987664 2357999999999999999999988766
No 151
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=66.58 E-value=5.9 Score=31.38 Aligned_cols=43 Identities=5% Similarity=0.094 Sum_probs=30.9
Q ss_pred CCHHH-HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 73 IKIEE-QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 73 ~~~~~-~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++..+ .++..|+.-..+.+..+++..+|++++||++++++...
T Consensus 33 l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 44433 34444443245789999999999999999998877654
No 152
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=66.48 E-value=5.2 Score=31.99 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=31.4
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+- ++.+| -..+.+..+++..+|++++||++.+++..+
T Consensus 35 ~lt~~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 77 (151)
T 3kp7_A 35 GISAEQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLN 77 (151)
T ss_dssp TCCHHHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555443 44444 556789999999999999999998877654
No 153
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=66.24 E-value=4.1 Score=30.96 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=28.3
Q ss_pred HHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 77 EQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 77 ~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+++..| -..+.+..+++..+|+|++||++.++....
T Consensus 24 ~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 24 WEILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp HHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444444 345689999999999999999998876644
No 154
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=66.22 E-value=3.7 Score=31.79 Aligned_cols=29 Identities=7% Similarity=0.099 Sum_probs=25.0
Q ss_pred ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+.+..+++..+|+|++||++.++...+
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~ 57 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLED 57 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 45689999999999999999998877654
No 155
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=66.09 E-value=4.7 Score=34.06 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..+++.++...+...+..|.+...++..+|+|+++|++++.
T Consensus 34 edL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 34 NELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 46888888888888888899999999999999999998653
No 156
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=66.05 E-value=4.9 Score=32.05 Aligned_cols=44 Identities=7% Similarity=0.284 Sum_probs=26.2
Q ss_pred CCCHHH-HHHHHhhhcc-cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEE-QLAIFMFIVG-HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~-~l~~~L~~L~-~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+ .++.+|+.-. .+.+..+++..++++++|+++++++..+
T Consensus 38 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 355544 3444554432 5789999999999999999998887754
No 157
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=65.88 E-value=5.3 Score=32.23 Aligned_cols=43 Identities=7% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCHHH-HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 73 IKIEE-QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 73 ~~~~~-~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++..+ .++..|+.-..+.+..+++..+|++++|+++.+++..+
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 55544 45555544456789999999999999999998887755
No 158
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=65.40 E-value=8.2 Score=32.41 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=32.5
Q ss_pred CCHHHH-HHHHhhhc-ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 73 IKIEEQ-LAIFMFIV-GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 73 ~~~~~~-l~~~L~~L-~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++.+- ++..|+.. ..+.+..+|+..+|++++|+++++++...
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 665444 45556554 35799999999999999999998877644
No 159
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=65.34 E-value=5.5 Score=32.35 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=31.0
Q ss_pred CCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 73 IKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 73 ~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++.+- ++..|+. ..+.+..+|+..+|++++|+++++++..+
T Consensus 51 lt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 51 LPTPKLRLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp CCHHHHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555443 4444444 34789999999999999999998887654
No 160
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=65.33 E-value=5.6 Score=26.72 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=21.2
Q ss_pred cccchhhhhhhc-----ccchhhhhhhhH
Q 016379 88 HNLRTRAVQELF-----RYSGETISRHFN 111 (390)
Q Consensus 88 ~~~~~~~l~~~f-----gis~stv~~~~~ 111 (390)
...+..++++.+ +||.+||+|.++
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 347788999999 999999999887
No 161
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=64.74 E-value=5.2 Score=30.84 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=32.8
Q ss_pred CCCHHH-HHHHHhhhcccccchhhhhhhcc----cchhhhhhhhHHHHH
Q 016379 72 RIKIEE-QLAIFMFIVGHNLRTRAVQELFR----YSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~-~l~~~L~~L~~~~~~~~l~~~fg----is~stv~~~~~~v~~ 115 (390)
+++..+ .++.+|+. ..+.+..+++..++ ++++||++++++..+
T Consensus 7 ~lt~~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~ 54 (123)
T 1okr_A 7 EISSAEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYK 54 (123)
T ss_dssp CCCHHHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH
Confidence 455544 45556665 55799999999999 889999999887765
No 162
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=64.49 E-value=5.2 Score=31.22 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=24.6
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+.+..+++..+|+|++||++.++....
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4679999999999999999999887654
No 163
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=64.34 E-value=6.8 Score=32.55 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=33.1
Q ss_pred CCCHH-HHHHHHhhhccc--ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIE-EQLAIFMFIVGH--NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~-~~l~~~L~~L~~--~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++.. ..++..|+.-+. +.+..+|+..++++++||++.+++...
T Consensus 66 glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 112 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLE 112 (181)
T ss_dssp TCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35553 445556655443 389999999999999999998887765
No 164
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=64.15 E-value=6.1 Score=32.40 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=31.8
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+- ++..|+. ..+.+..+|+..+|++++||++++++..+
T Consensus 42 ~lt~~~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 85 (168)
T 2nyx_A 42 NITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVG 85 (168)
T ss_dssp SCCHHHHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4555443 4445544 34789999999999999999998877654
No 165
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=64.15 E-value=6.5 Score=31.06 Aligned_cols=41 Identities=2% Similarity=-0.046 Sum_probs=29.1
Q ss_pred CCHHH-HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 73 IKIEE-QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 73 ~~~~~-~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++.+ .++..|.. ++.+..+++..+|++++|+++.+++..+
T Consensus 35 lt~~~~~iL~~l~~--~~~~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 35 LSYLDFSILKATSE--EPRSMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp CCHHHHHHHHHHHH--SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--CCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 55443 34444433 2239999999999999999998877655
No 166
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=63.66 E-value=4.4 Score=30.30 Aligned_cols=29 Identities=14% Similarity=0.345 Sum_probs=25.4
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNA 116 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~ 116 (390)
.+.+..++++.+|+|++|+++.++...++
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45889999999999999999999877665
No 167
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=63.48 E-value=6.3 Score=31.65 Aligned_cols=43 Identities=7% Similarity=0.226 Sum_probs=31.4
Q ss_pred CCCHHH-HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEE-QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~-~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+ .++.+|+.- .+.+..+++..++++++||++.+++..+
T Consensus 41 ~lt~~~~~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 41 DMKTTELYAFLYVALF-GPKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp HSBHHHHHHHHHHHHH-CCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455543 344444433 3789999999999999999998877755
No 168
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=62.68 E-value=7 Score=31.09 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=33.7
Q ss_pred CCCH-HHHHHHHhhhcccccchhhhhhhcc----cchhhhhhhhHHHHH
Q 016379 72 RIKI-EEQLAIFMFIVGHNLRTRAVQELFR----YSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~-~~~l~~~L~~L~~~~~~~~l~~~fg----is~stv~~~~~~v~~ 115 (390)
+++. +..++.+||....+.+..+|+..++ ++.+||++++++..+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK 54 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 3555 4456667776545799999999997 899999998887754
No 169
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=62.59 E-value=4.8 Score=35.24 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhccc-ccch--hhhhhhcccchhhhhhhhHHHHH
Q 016379 75 IEEQLAIFMFIVGH-NLRT--RAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 75 ~~~~l~~~L~~L~~-~~~~--~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.++.++-+|+.|.. |.+. .+++..+++|++|+++.+++...
T Consensus 7 ~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~ 50 (230)
T 1fx7_A 7 TTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMER 50 (230)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46777888888753 6666 99999999999999998887755
No 170
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=62.57 E-value=4.6 Score=28.63 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.1
Q ss_pred ccccchhhhhhhcccchhhhhhhhHH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
..|.+..+||...|+|++|++++.+.
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 56899999999999999999987654
No 171
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=62.48 E-value=3 Score=27.96 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.3
Q ss_pred ccccchhhhhhhcccchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..|.++.++|...|+|++|++++.+
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4688999999999999999999765
No 172
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=62.01 E-value=5 Score=34.49 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=35.1
Q ss_pred CHH-HHHHHHhhhccc-------------ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 74 KIE-EQLAIFMFIVGH-------------NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 74 ~~~-~~l~~~L~~L~~-------------~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++. ++++-+|..++. ..+..++|...|+|+.|++|+++++.+
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 201 (231)
T 3e97_A 146 QNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEA 201 (231)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 445 899988887763 357899999999999999999988765
No 173
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=61.91 E-value=4.9 Score=32.54 Aligned_cols=38 Identities=5% Similarity=0.252 Sum_probs=29.5
Q ss_pred HHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 77 EQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 77 ~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..++..|+. ..+.+..+++..++++++|+++++++..+
T Consensus 53 ~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 53 FPFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp HHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455543 35789999999999999999998887654
No 174
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=61.85 E-value=6.3 Score=28.91 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=24.7
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+.+..+++..+|+|++|+++.++...+
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999887755
No 175
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=61.47 E-value=1.9 Score=29.31 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.8
Q ss_pred ccchhhhhhhcccchhhhhhhh
Q 016379 89 NLRTRAVQELFRYSGETISRHF 110 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~ 110 (390)
+.++.++|...|||++||+++.
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 4589999999999999999985
No 176
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=61.39 E-value=17 Score=28.90 Aligned_cols=76 Identities=9% Similarity=0.033 Sum_probs=48.4
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhccCCccc-----c--CCCCCHHHHHHHHhhhcc--cccchhhhhhhc--------c
Q 016379 38 GQSERCLENFRMDKKVFYKLCDILQSKGLLR-----H--TNRIKIEEQLAIFMFIVG--HNLRTRAVQELF--------R 100 (390)
Q Consensus 38 ~~d~~f~~~frms~~~F~~L~~~L~~~~~~~-----~--~~~~~~~~~l~~~L~~L~--~~~~~~~l~~~f--------g 100 (390)
.+-.+.-+.|++++.++.+.+.......... . ...++.+..-.+ +.++. ...+...++..+ |
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I-~~~~~~~~~~s~~~i~~~l~~~~~~~~g 127 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKI-AEYKRQNPTMFAWEIRDRLLAERVCDND 127 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHH-HHHHHHCTTCCHHHHHHHHHHTTSSCTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHH-HHHHHhCcchhHHHHHHHHHHhcccccC
Confidence 5677888999999999999988765432111 1 123555433222 23332 236677777766 6
Q ss_pred --cchhhhhhhhHHHH
Q 016379 101 --YSGETISRHFNNVL 114 (390)
Q Consensus 101 --is~stv~~~~~~v~ 114 (390)
+|.+||++++++..
T Consensus 128 ~~~S~sTV~r~L~~~~ 143 (149)
T 1k78_A 128 TVPSVSSINRIIRTKV 143 (149)
T ss_dssp TSCCHHHHHHHHHCC-
T ss_pred CCcCHHHHHHHHHHHh
Confidence 89999999887543
No 177
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=61.28 E-value=3.2 Score=29.09 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=23.2
Q ss_pred hcccccchhhhhhhcccchhhhhhhhH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
+-..|.++.++|...|||++|++++-+
T Consensus 20 R~~~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 20 RKKLSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 345689999999999999999999754
No 178
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=61.04 E-value=3.3 Score=28.29 Aligned_cols=26 Identities=4% Similarity=-0.026 Sum_probs=22.3
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
...|.++.++|...|+|++|++++.+
T Consensus 13 ~~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 13 IALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 34688999999999999999998764
No 179
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=60.87 E-value=4.6 Score=41.10 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHhhhcc---cccchhhhhhhcccchhhhhhhhHHHHHHH
Q 016379 72 RIKIEEQLAIFMFIVG---HNLRTRAVQELFRYSGETISRHFNNVLNAI 117 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~---~~~~~~~l~~~fgis~stv~~~~~~v~~~l 117 (390)
.+|+.++-.+.|+++- .|.++..+|..+|||.+||..+.++.+..|
T Consensus 550 ~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kL 598 (613)
T 3iyd_F 550 GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 598 (613)
T ss_dssp SSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 6899999888888762 688999999999999999999888776655
No 180
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=60.66 E-value=3.4 Score=28.04 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=22.4
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
...|.++.++|...|+|++|++++.+
T Consensus 11 ~~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 11 IQLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34688999999999999999998754
No 181
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=60.52 E-value=3.7 Score=29.47 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=23.6
Q ss_pred hcccccchhhhhhhcccchhhhhhhhH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
+-..|.++.++|...|+|++|++++.+
T Consensus 27 r~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 27 LRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345688999999999999999999875
No 182
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=60.49 E-value=3.6 Score=29.15 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=21.3
Q ss_pred cccchhhhhhhcccchhhhhhhhHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
.| ++.++|...|||++||+++.+-
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHC
Confidence 47 9999999999999999998763
No 183
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=60.01 E-value=35 Score=26.21 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHhccCCccccCCCCCHHHHHHHHhh-hcccccchhhhhhhcccchhhhhhhhHHHHHH
Q 016379 48 RMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMF-IVGHNLRTRAVQELFRYSGETISRHFNNVLNA 116 (390)
Q Consensus 48 rms~~~F~~L~~~L~~~~~~~~~~~~~~~~~l~~~L~-~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~ 116 (390)
.|+.+.|.-|++.-.- .. +++..+|+ +|-.|.+-..+++.+||+++-.++.++++-..
T Consensus 29 ~vsee~F~LLlelS~I----------rS-ekII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL~~v 87 (111)
T 3m8j_A 29 SMSEEQFFLLIGISSI----------HS-DRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRLTRL 87 (111)
T ss_dssp CSCHHHHHHHHHHSCC----------CC-HHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCC----------CC-HHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 5677888777765442 22 55555555 88899999999999999999999888776554
No 184
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=59.59 E-value=9 Score=32.82 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHhhhcc-------------cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVG-------------HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~-------------~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+++++++.+|..|+ -..+..++|...|+|+.|++|+++++.+
T Consensus 150 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 206 (232)
T 2gau_A 150 QKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVS 206 (232)
T ss_dssp HSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4688999998886542 2357899999999999999999988754
No 185
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=59.56 E-value=12 Score=28.54 Aligned_cols=74 Identities=15% Similarity=0.058 Sum_probs=46.9
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhccCCccc----c--C-CCCCHHHHHHHHhhhcc--cccchhhhhhhc---c-----
Q 016379 38 GQSERCLENFRMDKKVFYKLCDILQSKGLLR----H--T-NRIKIEEQLAIFMFIVG--HNLRTRAVQELF---R----- 100 (390)
Q Consensus 38 ~~d~~f~~~frms~~~F~~L~~~L~~~~~~~----~--~-~~~~~~~~l~~~L~~L~--~~~~~~~l~~~f---g----- 100 (390)
.+-.+.-+.|++++.++.+.+.......... . . ..++.+..-. .+.++. ...+...++..+ |
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~-i~~~~~~~~~~s~~~i~~~l~~~g~~~~~ 112 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENR-IEEYKRSSPGMFSWEIREKLIREGVCDRS 112 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHH-HHHTTTTCTTCCHHHHHHHHHHTSSSCST
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHH-HHHHHHhCcchHHHHHHHHHHHcCCcccc
Confidence 5677888999999999999888765322111 1 1 2355433222 223332 246788888888 6
Q ss_pred --cchhhhhhhhHH
Q 016379 101 --YSGETISRHFNN 112 (390)
Q Consensus 101 --is~stv~~~~~~ 112 (390)
+|.+||++++++
T Consensus 113 ~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 113 TAPSVSAISRLVRG 126 (128)
T ss_dssp TCCCHHHHHHHC--
T ss_pred CCcCHHHHHHHHHh
Confidence 599999998864
No 186
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=59.37 E-value=11 Score=30.44 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=24.5
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
...++.++|+.+|+|++|+++.+++..+
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 20 GKAPLREISKITGLAESTIHERIRKLRE 47 (151)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999998887755
No 187
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=59.24 E-value=3.8 Score=29.07 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.3
Q ss_pred ccccchhhhhhhcccchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..|.++.++|...|+|++|++++.+
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 4688999999999999999999765
No 188
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=59.16 E-value=7.2 Score=29.53 Aligned_cols=29 Identities=10% Similarity=0.252 Sum_probs=24.9
Q ss_pred ccccchhhhhhhc-ccchhhhhhhhHHHHH
Q 016379 87 GHNLRTRAVQELF-RYSGETISRHFNNVLN 115 (390)
Q Consensus 87 ~~~~~~~~l~~~f-gis~stv~~~~~~v~~ 115 (390)
..+.++.+++... |+|++|+++.+++..+
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3458999999999 9999999998877655
No 189
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=58.99 E-value=9.9 Score=30.38 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=24.2
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
...++.++|..+|+|++||++.+++..+
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQLES 45 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3579999999999999999998877644
No 190
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=58.75 E-value=6.5 Score=34.81 Aligned_cols=43 Identities=7% Similarity=0.039 Sum_probs=31.7
Q ss_pred CCHHHHHHHHhhhcc---cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 73 IKIEEQLAIFMFIVG---HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 73 ~~~~~~l~~~L~~L~---~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++.-++.+-.|..|+ .+.+..+++...|+++||++|+++...+
T Consensus 4 v~sl~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~ 49 (249)
T 1mkm_A 4 MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE 49 (249)
T ss_dssp CTTHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334445554555554 2588999999999999999999887655
No 191
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=58.42 E-value=13 Score=26.52 Aligned_cols=41 Identities=7% Similarity=0.129 Sum_probs=30.2
Q ss_pred CHHHHHHHHhhhcccc--cchhhhhhhcccchhhhhhhhHHHH
Q 016379 74 KIEEQLAIFMFIVGHN--LRTRAVQELFRYSGETISRHFNNVL 114 (390)
Q Consensus 74 ~~~~~l~~~L~~L~~~--~~~~~l~~~fgis~stv~~~~~~v~ 114 (390)
.+-+++.-++..|..| .+...||..+|++++.|.+++....
T Consensus 12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~ 54 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQ 54 (75)
T ss_dssp HHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445666666677655 4789999999999999888765543
No 192
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=58.35 E-value=10 Score=30.52 Aligned_cols=28 Identities=4% Similarity=-0.045 Sum_probs=24.4
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
...++.++|..+|+|++|+++.+++..+
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 20 GRATLSELATRAGLSVSAVQSRVRRLES 47 (150)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999998877754
No 193
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=58.17 E-value=7.1 Score=30.18 Aligned_cols=29 Identities=7% Similarity=0.079 Sum_probs=24.3
Q ss_pred ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+.+..+++..+|+|++||++.++....
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~L~~L~~ 60 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNHLSCLRG 60 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34578899999999999999998876644
No 194
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=58.09 E-value=4.1 Score=28.19 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=22.5
Q ss_pred ccccchhhhhhhcccchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..|.++.++|...|+|++|++++.+
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4688999999999999999999775
No 195
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=57.97 E-value=13 Score=29.77 Aligned_cols=43 Identities=7% Similarity=0.102 Sum_probs=28.4
Q ss_pred CCHHH-HHHHHhhhcc----cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 73 IKIEE-QLAIFMFIVG----HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 73 ~~~~~-~l~~~L~~L~----~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++.+ .++..|+... .+.+..+++...+++++|+++++++...
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 55533 3444444432 2468999999999999999998887643
No 196
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=57.92 E-value=6.8 Score=34.57 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=31.6
Q ss_pred CHHHHHHHHhhhccc---ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 74 KIEEQLAIFMFIVGH---NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 74 ~~~~~l~~~L~~L~~---~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+.-++.+-.|..|+. +.+..+++...|+++||++|+++...+
T Consensus 3 ~sl~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~ 47 (241)
T 2xrn_A 3 QVIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEE 47 (241)
T ss_dssp CHHHHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344555555666643 578999999999999999998877654
No 197
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=57.88 E-value=7.3 Score=33.75 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHhhhcc--------------c-ccchhhhhhhcccch-hhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVG--------------H-NLRTRAVQELFRYSG-ETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~--------------~-~~~~~~l~~~fgis~-stv~~~~~~v~~ 115 (390)
..+++++++-+|..|+ - ..+..++|...|+++ .|++|+++++.+
T Consensus 137 ~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~ 196 (238)
T 2bgc_A 137 INGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQ 196 (238)
T ss_dssp TTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 4678899998887653 2 467889999999999 599999998865
No 198
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=57.79 E-value=6.9 Score=31.92 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=25.3
Q ss_pred ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+.+..+|+..+|+|++||++.++...+
T Consensus 69 ~~~~t~~eLa~~lgls~stvs~hL~~L~~ 97 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHLRVLTE 97 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55689999999999999999998877655
No 199
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=57.72 E-value=4.2 Score=28.74 Aligned_cols=22 Identities=0% Similarity=-0.068 Sum_probs=19.5
Q ss_pred chhhhhhhcccchhhhhhhhHH
Q 016379 91 RTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 91 ~~~~l~~~fgis~stv~~~~~~ 112 (390)
+...+|..+|||++||+++++.
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 3889999999999999999753
No 200
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=57.67 E-value=4 Score=28.39 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=22.8
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
...|.++.++|...|+|++|++++.+
T Consensus 20 ~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 20 TQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 34688999999999999999999765
No 201
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=57.58 E-value=12 Score=30.16 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=24.5
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
...++.++|..+|+|++|+++.+++..+
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999998887755
No 202
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=57.37 E-value=9.7 Score=30.10 Aligned_cols=28 Identities=4% Similarity=0.071 Sum_probs=24.3
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
...++.+++..+|+|++|+++.+++...
T Consensus 17 ~~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 17 ARTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999998877754
No 203
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=57.29 E-value=11 Score=30.20 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=23.9
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..++.++|..+|+|++|+++.+++..+
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEK 43 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 479999999999999999998877654
No 204
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=57.26 E-value=4.1 Score=28.89 Aligned_cols=29 Identities=10% Similarity=-0.005 Sum_probs=24.6
Q ss_pred hhcccccchhhhhhhcccchhhhhhhhHH
Q 016379 84 FIVGHNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 84 ~~L~~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
++...|.++.++|...|||+++++++.+-
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 34567899999999999999999997654
No 205
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=56.88 E-value=9.5 Score=33.92 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHhhhcc---cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVG---HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~---~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+..-++.+-.|..|+ .+.+..+|+...|+++||++|+++...+
T Consensus 9 ~v~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~ 55 (257)
T 2g7u_A 9 YIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK 55 (257)
T ss_dssp CCHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556666666777775 3578999999999999999999887655
No 206
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=56.55 E-value=12 Score=29.96 Aligned_cols=28 Identities=14% Similarity=0.372 Sum_probs=24.3
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
...++.++|..+|+|++|+++.+++..+
T Consensus 22 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 22 SRLTYRELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4589999999999999999998877654
No 207
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=56.54 E-value=2.3 Score=36.19 Aligned_cols=36 Identities=6% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHH
Q 016379 78 QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 78 ~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v 113 (390)
.+--...++..|.+...+|..+|||.+|++++++.-
T Consensus 147 ~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 147 EWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 344444556789999999999999999999988653
No 208
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=56.40 E-value=11 Score=32.36 Aligned_cols=43 Identities=7% Similarity=0.085 Sum_probs=32.4
Q ss_pred CCCHHHH-HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+- ++..|+.- .+.+..+|+..++++++|+++++++...
T Consensus 45 gLt~~q~~iL~~L~~~-~~~t~~eLa~~l~i~~stvs~~l~~Le~ 88 (207)
T 2fxa_A 45 DLNINEHHILWIAYQL-NGASISEIAKFGVMHVSTAFNFSKKLEE 88 (207)
T ss_dssp TCCHHHHHHHHHHHHH-TSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC-CCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4666444 44555443 4799999999999999999998877654
No 209
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=56.34 E-value=8.8 Score=35.32 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=28.2
Q ss_pred HHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 81 IFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 81 ~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+...+...+.+..+++..||+|++||+|-+.+..+
T Consensus 13 ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 13 IAQLYYEQDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34445566799999999999999999998876544
No 210
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=56.14 E-value=4.5 Score=27.22 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.0
Q ss_pred ccccchhhhhhhcccchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..|.++.++|...|+|++|++++.+
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 4578999999999999999999765
No 211
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=55.96 E-value=4.1 Score=28.41 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.3
Q ss_pred ccccchhhhhhhcccchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..|.++.++|...|+|++|++++.+
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4688999999999999999999765
No 212
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=55.33 E-value=4.5 Score=30.68 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=27.4
Q ss_pred HHHHHHHhh--hcccccchhhhhhhcccchhhhhhhh
Q 016379 76 EEQLAIFMF--IVGHNLRTRAVQELFRYSGETISRHF 110 (390)
Q Consensus 76 ~~~l~~~L~--~L~~~~~~~~l~~~fgis~stv~~~~ 110 (390)
.+.+.--|. +...|.++.++|...|||++|++++=
T Consensus 34 ~~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E 70 (101)
T 4ghj_A 34 AEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAE 70 (101)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHH
Confidence 344555554 44679999999999999999999864
No 213
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=55.27 E-value=9.2 Score=28.70 Aligned_cols=43 Identities=7% Similarity=0.064 Sum_probs=32.3
Q ss_pred CCH-HHHHHHHhhhcc-----cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 73 IKI-EEQLAIFMFIVG-----HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 73 ~~~-~~~l~~~L~~L~-----~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++ +..++..|+..+ ...++..|++..++++||++|.+.+...
T Consensus 14 l~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~ 62 (96)
T 2obp_A 14 IDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQA 62 (96)
T ss_dssp CCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHH
Confidence 444 444556677662 3468999999999999999998877655
No 214
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=55.27 E-value=4.7 Score=27.72 Aligned_cols=25 Identities=8% Similarity=-0.012 Sum_probs=22.2
Q ss_pred ccccchhhhhhhcccchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..|.++.++|...|+|++|++++.+
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4688999999999999999998764
No 215
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=55.18 E-value=4 Score=28.65 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.7
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
...|.++.++|...|||++|++++.+
T Consensus 12 ~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 12 IRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 34688999999999999999999765
No 216
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=55.07 E-value=12 Score=26.82 Aligned_cols=28 Identities=4% Similarity=0.128 Sum_probs=23.4
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
...+..+++..|++|.+||.+.+.+..+
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~Le~ 42 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3478899999999999999998776544
No 217
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=54.94 E-value=9.5 Score=30.21 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=24.4
Q ss_pred cccchhhhhhhc-ccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELF-RYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~f-gis~stv~~~~~~v~~ 115 (390)
.+.++.+++..+ |+|++|+++.+++...
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~Le~ 75 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQALEQ 75 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 458999999999 7999999998887755
No 218
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=54.87 E-value=5.1 Score=28.71 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=22.7
Q ss_pred ccccchhhhhhhcccchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..|.++.++|...|+|++|++++.+
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 5688999999999999999999876
No 219
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=54.68 E-value=9.9 Score=33.93 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=34.3
Q ss_pred CCHHHHHHHHhhhccc---ccchhhhhhhcccchhhhhhhhHHHHHH
Q 016379 73 IKIEEQLAIFMFIVGH---NLRTRAVQELFRYSGETISRHFNNVLNA 116 (390)
Q Consensus 73 ~~~~~~l~~~L~~L~~---~~~~~~l~~~fgis~stv~~~~~~v~~~ 116 (390)
+..-++.+-.|..|+. +.+..+|+...|+++||++|+++.....
T Consensus 2 i~sl~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~ 48 (260)
T 3r4k_A 2 MGTVSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEA 48 (260)
T ss_dssp CCHHHHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3455666666777763 5789999999999999999988877653
No 220
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=54.20 E-value=5 Score=27.80 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=22.2
Q ss_pred ccccchhhhhhhcccchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..|.++.++|...|+|++|++++.+
T Consensus 21 ~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 21 EKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4688999999999999999998765
No 221
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=53.81 E-value=5.2 Score=28.92 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=23.2
Q ss_pred hcccccchhhhhhhcccchhhhhhhhH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
+...|.++.++|...|+|++|++++-+
T Consensus 23 R~~~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 23 RLDAGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 345789999999999999999998754
No 222
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=53.75 E-value=14 Score=30.15 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.9
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..++.++|..+|+|++|+++.+++..+
T Consensus 24 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 24 RLTNVELSERVALSPSPCLRRLKQLED 50 (162)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 479999999999999999998877754
No 223
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=53.45 E-value=6.3 Score=29.71 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=31.0
Q ss_pred HHHHHHHhhhcccccchhhhhhhcc----cchhhhhhhhHHHHH
Q 016379 76 EEQLAIFMFIVGHNLRTRAVQELFR----YSGETISRHFNNVLN 115 (390)
Q Consensus 76 ~~~l~~~L~~L~~~~~~~~l~~~fg----is~stv~~~~~~v~~ 115 (390)
+..|+.+||- ..+.+..+|++.++ ++.+||.+++++..+
T Consensus 37 e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 37 ELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp CSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 4567778887 44789999999997 578999998887765
No 224
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=53.45 E-value=3.9 Score=28.40 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=19.9
Q ss_pred cchhhhhhhcccchhhhhhhhH
Q 016379 90 LRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~~ 111 (390)
.++..+|+.+||++++||++++
T Consensus 14 ~s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 14 FGQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 3899999999999999999863
No 225
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=53.41 E-value=10 Score=33.86 Aligned_cols=44 Identities=7% Similarity=0.068 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHhhhcc---cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVG---HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~---~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+..-++.+-.|..|+ .+.+..+|+...|+++||++|+++...+
T Consensus 18 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~ 64 (260)
T 2o0y_A 18 GVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA 64 (260)
T ss_dssp CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4666677777777775 3689999999999999999999887655
No 226
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=53.10 E-value=11 Score=33.82 Aligned_cols=44 Identities=7% Similarity=-0.001 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHhhhcc---cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVG---HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~---~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.++.-++.+-.|..|+ .+.+..+|+...|+++||++|+++....
T Consensus 16 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~ 62 (265)
T 2ia2_A 16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE 62 (265)
T ss_dssp CCHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556667766777775 3578999999999999999999987665
No 227
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=52.93 E-value=4.6 Score=27.89 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.2
Q ss_pred chhhhhhhcccchhhhhhhhHH
Q 016379 91 RTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 91 ~~~~l~~~fgis~stv~~~~~~ 112 (390)
+..++|..+|||.+|+.+++..
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 5678999999999999998764
No 228
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=52.92 E-value=6.4 Score=36.24 Aligned_cols=23 Identities=39% Similarity=0.349 Sum_probs=20.7
Q ss_pred cchhhhhhhcccchhhhhhhhHH
Q 016379 90 LRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~~~ 112 (390)
.+.++||...|||.+||||+++.
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 46899999999999999999964
No 229
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=52.84 E-value=4.6 Score=27.93 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.1
Q ss_pred ccccchhhhhhhcccchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..|.++.++|...|+|++|++++.+
T Consensus 16 ~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 16 KLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4578999999999999999998765
No 230
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=52.57 E-value=7.2 Score=28.54 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=22.2
Q ss_pred ccccchhhhhhhcccchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..|.++.++|...|+|++|++++.+
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4678999999999999999999865
No 231
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=52.45 E-value=11 Score=33.15 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhH
Q 016379 71 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 71 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..+++.++...+...+..|.+...+|..+|+|+++|++++.
T Consensus 116 ~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 46888777766666668899999999999999999988764
No 232
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=51.41 E-value=15 Score=28.19 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=33.2
Q ss_pred CCCH-HHHHHHHhhhcccccchhhhhhhcc----cchhhhhhhhHHHHH
Q 016379 72 RIKI-EEQLAIFMFIVGHNLRTRAVQELFR----YSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~-~~~l~~~L~~L~~~~~~~~l~~~fg----is~stv~~~~~~v~~ 115 (390)
++++ +..++.+||-. .+.+..+|+..++ ++.+||++++++..+
T Consensus 7 ~Lt~~q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYK 54 (126)
T ss_dssp CCCHHHHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 4555 44577777774 4799999999997 589999998887754
No 233
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=51.36 E-value=16 Score=30.31 Aligned_cols=43 Identities=9% Similarity=0.124 Sum_probs=30.4
Q ss_pred CCCHHH-HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEE-QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~-~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+...+ +++-.|.. ....++.++|..+|+|++||++.+++..+
T Consensus 14 ~ld~~d~~IL~~L~~-~~~~s~~eLA~~lglS~~tv~~~l~~L~~ 57 (171)
T 2ia0_A 14 HLDDLDRNILRLLKK-DARLTISELSEQLKKPESTIHFRIKKLQE 57 (171)
T ss_dssp CCCHHHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444 44444433 33589999999999999999998877754
No 234
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=51.20 E-value=5.9 Score=28.05 Aligned_cols=26 Identities=8% Similarity=-0.050 Sum_probs=22.8
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
...|.++.++|...|+|++|++++-+
T Consensus 21 ~~~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 21 LEKGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 35789999999999999999998764
No 235
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=50.99 E-value=14 Score=32.78 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=25.5
Q ss_pred ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+.+..++|..+|++++|+++.++...+
T Consensus 164 ~~~~s~~eLA~~lglsksTv~r~L~~Le~ 192 (244)
T 2wte_A 164 TKGTGITELAKMLDKSEKTLINKIAELKK 192 (244)
T ss_dssp HTCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35789999999999999999999887765
No 236
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=50.92 E-value=5.9 Score=29.09 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=23.0
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
...|.++.++|...|||++|++++.+
T Consensus 34 ~~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 34 IDRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45689999999999999999999765
No 237
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=50.87 E-value=9 Score=32.37 Aligned_cols=45 Identities=11% Similarity=0.294 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
.++..|. -.|.+|+.|.+..+++...++|..||..++.++.+-|.
T Consensus 154 ~Lt~rE~--~vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 154 QLTPRER--DILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHH--HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 3565544 34566788999999999999999999999999888763
No 238
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=50.70 E-value=15 Score=28.00 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=27.8
Q ss_pred HHHHhhhcccccchhhhhhhc-ccchhhhhhhhHHHHH
Q 016379 79 LAIFMFIVGHNLRTRAVQELF-RYSGETISRHFNNVLN 115 (390)
Q Consensus 79 l~~~L~~L~~~~~~~~l~~~f-gis~stv~~~~~~v~~ 115 (390)
++..|. ..+.++.+++..+ |++++|+++.+++...
T Consensus 27 IL~~L~--~~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 27 LMDELF--QGTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp HHHHHH--HSCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHH--hCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 444444 3568999999999 9999999998887755
No 239
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=50.56 E-value=9.6 Score=30.73 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=25.2
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNA 116 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~ 116 (390)
.+.++.+++...|+|++|+++.+++..+.
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~ 64 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEH 64 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 45899999999999999999988877653
No 240
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=50.53 E-value=7.1 Score=26.56 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.1
Q ss_pred ccccchhhhhhhcc--cchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFR--YSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fg--is~stv~~~~~ 111 (390)
..|.++.++|...| +|++|++++.+
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 46889999999999 99999998765
No 241
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=50.44 E-value=7 Score=26.85 Aligned_cols=23 Identities=4% Similarity=0.041 Sum_probs=19.8
Q ss_pred cchhhhhhhcccchhhhhhhhHH
Q 016379 90 LRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~~~ 112 (390)
.+..+++..+|+|++|+++.+++
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 35678999999999999998875
No 242
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=50.36 E-value=8.1 Score=33.69 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=31.7
Q ss_pred HHHHHHHhhhcc-cccch--hhhhhhcccchhhhhhhhHHHHH
Q 016379 76 EEQLAIFMFIVG-HNLRT--RAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 76 ~~~l~~~L~~L~-~~~~~--~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+.++.+|+.+. .|.+. .++|..++++++|+++.+++..+
T Consensus 8 ~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~ 50 (226)
T 2qq9_A 8 TEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMER 50 (226)
T ss_dssp HHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566777888774 35555 89999999999999998877654
No 243
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=50.15 E-value=5.6 Score=36.57 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.8
Q ss_pred chhhhhhhcccchhhhhhhhHH
Q 016379 91 RTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 91 ~~~~l~~~fgis~stv~~~~~~ 112 (390)
+.+++|...|||.+||||+++.
T Consensus 2 ti~diA~~agVS~~TVSrvLn~ 23 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK 23 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 4689999999999999999874
No 244
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=50.05 E-value=5.5 Score=36.47 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=20.5
Q ss_pred cchhhhhhhcccchhhhhhhhHH
Q 016379 90 LRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~~~ 112 (390)
.+.+++|...|||.+||||+++.
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 36789999999999999999874
No 245
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=49.97 E-value=5.3 Score=28.97 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=23.1
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
...|.++.++|...|+|++|++++.+
T Consensus 27 ~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 27 NELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45689999999999999999999875
No 246
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=49.75 E-value=14 Score=31.34 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=27.5
Q ss_pred HHHHHHhh-hc---ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 77 EQLAIFMF-IV---GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 77 ~~l~~~L~-~L---~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+++-++. ++ +.+.+.+++|..+|+|.+||++.++...+
T Consensus 8 ~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~ 50 (196)
T 3k2z_A 8 RKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEK 50 (196)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 34555554 22 33578999999999999998887665543
No 247
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=49.66 E-value=5.5 Score=28.25 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=22.7
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
...|.++.++|...|+|++|++++.+
T Consensus 24 ~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 24 SAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 34689999999999999999998764
No 248
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=49.66 E-value=16 Score=30.78 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=23.8
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+.+..++|..+|+|++||.+-++....
T Consensus 36 ~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 36 PVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478999999999999999999886654
No 249
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.66 E-value=21 Score=28.61 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=24.9
Q ss_pred HHHHhhhcccccchhhhhhhc-----ccchhhhhhhhHHHHH
Q 016379 79 LAIFMFIVGHNLRTRAVQELF-----RYSGETISRHFNNVLN 115 (390)
Q Consensus 79 l~~~L~~L~~~~~~~~l~~~f-----gis~stv~~~~~~v~~ 115 (390)
++-.|.--....+..+|...+ ++|.+||+|.++.+.+
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 333443333346777777776 8999999998876655
No 250
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=49.54 E-value=17 Score=30.04 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=24.3
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
...++.++|..+|+|++||++.+++..+
T Consensus 40 ~~~s~~eLA~~lglS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 40 GKAPLREISKITGLAESTIHERIRKLRE 67 (171)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999998877654
No 251
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=49.48 E-value=7 Score=30.78 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=23.3
Q ss_pred hcccccchhhhhhhcccchhhhhhhhH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
+-..|.++.++|..+|+|++|++++-+
T Consensus 80 R~~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 80 RKKLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 345689999999999999999999754
No 252
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=49.30 E-value=13 Score=32.02 Aligned_cols=40 Identities=13% Similarity=0.390 Sum_probs=30.8
Q ss_pred HHHHHHHhhhcc---cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 76 EEQLAIFMFIVG---HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 76 ~~~l~~~L~~L~---~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+..+-+++.|. .+.+..++|..+++|++||++.+++..+
T Consensus 4 ~edYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~ 46 (214)
T 3hrs_A 4 KEDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLA 46 (214)
T ss_dssp HHHHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 344555556554 3578999999999999999999887755
No 253
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=49.17 E-value=6.6 Score=27.75 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=22.3
Q ss_pred ccccchhhhhhhcccchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..|.++.++|...|+|++|++++.+
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4688999999999999999998765
No 254
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=49.12 E-value=11 Score=28.66 Aligned_cols=39 Identities=18% Similarity=0.087 Sum_probs=30.4
Q ss_pred CCHHHHHHHHhhhc--ccccchhhhhhhcccchhhhhhhhH
Q 016379 73 IKIEEQLAIFMFIV--GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 73 ~~~~~~l~~~L~~L--~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
......+.-.|..+ ..|.++.++|...|+|+++++++-+
T Consensus 23 ~~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 23 PLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 44555666666544 4689999999999999999998764
No 255
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=49.06 E-value=40 Score=28.35 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHhh----hcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 72 RIKIEEQLAIFMF----IVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 72 ~~~~~~~l~~~L~----~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
+.+|..-.+.+|+ .++...+.++++...|+++.|+.+..+++.+.|.
T Consensus 144 gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 144 GKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 4555544444443 4456678999999999999999999998888763
No 256
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=49.03 E-value=7 Score=29.65 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhH
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
...+-+.|.-.+ +-..|.++.++|...|||++|++++.+
T Consensus 11 ~~~pG~~Lk~~l-r~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 11 PIHPGEILAEEL-GFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp CCCHHHHHHHHH-HHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHH-HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 344545444211 235689999999999999999999775
No 257
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=49.01 E-value=3.8 Score=34.20 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=0.9
Q ss_pred CCCHHHHHHHHhhhcc---cccchhhhhhhcccchhhhhhhhHHHH
Q 016379 72 RIKIEEQLAIFMFIVG---HNLRTRAVQELFRYSGETISRHFNNVL 114 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~---~~~~~~~l~~~fgis~stv~~~~~~v~ 114 (390)
..+++++++-+|..+. ...+..++|...|+++.|++|++++..
T Consensus 148 ~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 148 MYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp HC--------------------------------------------
T ss_pred cCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhhc
Confidence 3566777777776553 356889999999999999999988753
No 258
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=48.82 E-value=8.9 Score=28.99 Aligned_cols=25 Identities=4% Similarity=0.082 Sum_probs=21.3
Q ss_pred chhhhhhhcccchhhhhhhhHHHHH
Q 016379 91 RTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 91 ~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+.++++..||+|++||.+.+.....
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L~~ 69 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKLES 69 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7899999999999999987766543
No 259
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=48.75 E-value=13 Score=27.33 Aligned_cols=27 Identities=4% Similarity=0.111 Sum_probs=22.7
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVL 114 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~ 114 (390)
...+..+|+..|++|.+||.+.+.+..
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~Le 41 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERME 41 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357899999999999999998776553
No 260
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=48.39 E-value=18 Score=27.13 Aligned_cols=30 Identities=7% Similarity=0.203 Sum_probs=25.8
Q ss_pred hcccccchhhhhhhcccchhhhhhhhHHHH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFNNVL 114 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~~v~ 114 (390)
.+....+..++|..+|+|.+++++.|++.+
T Consensus 17 ~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 46 (108)
T 3oou_A 17 HFSEGMSLKTLGNDFHINAVYLGQLFQKEM 46 (108)
T ss_dssp HTTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345577899999999999999999998874
No 261
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=48.22 E-value=12 Score=29.99 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=23.9
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+.+..+++..+|+|++||++.+++...
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~ 80 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLAT 80 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4578999999999999999998876643
No 262
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=48.04 E-value=6.8 Score=36.40 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=20.3
Q ss_pred cchhhhhhhcccchhhhhhhhH
Q 016379 90 LRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~~ 111 (390)
.+.++||...|||.+||||+++
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn 31 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYN 31 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHC
Confidence 5688999999999999999995
No 263
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=47.84 E-value=6.9 Score=29.06 Aligned_cols=26 Identities=8% Similarity=0.011 Sum_probs=22.5
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
...|.++.++|...|||++|++++-+
T Consensus 40 ~~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 40 RALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 34689999999999999999998753
No 264
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=47.77 E-value=36 Score=31.14 Aligned_cols=186 Identities=11% Similarity=-0.013 Sum_probs=93.2
Q ss_pred HHHhhcC---CCHHHHHHHHHHhccCC-ccc----cC--CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhH
Q 016379 42 RCLENFR---MDKKVFYKLCDILQSKG-LLR----HT--NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 42 ~f~~~fr---ms~~~F~~L~~~L~~~~-~~~----~~--~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
.+.+.|+ +++.++.+.+....... .+. ++ +.++. +++.-.+ --....+++.++..++||.+||+++++
T Consensus 31 ~l~~~~g~~~vs~~tv~~w~~r~~~g~~~l~~~~r~grp~~~~~-~~i~~~v-~~~~~~t~~~ia~~l~vs~~tV~r~L~ 108 (345)
T 3hot_A 31 MLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYED-AELQALL-DEDDAQTQKQLAEQLEVSQQAVSNRLR 108 (345)
T ss_dssp HHHHHTCSCSCCHHHHHHHHHHHTTCCCCCSCCCCCCCCCSSCH-HHHHHHH-HHCSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHhCCCccccCCCCCCCCCcccH-HHHHHHH-HhCccchHHHHHHHHCCCHHHHHHHHH
Confidence 3445577 99999999999876421 111 11 13443 3333322 223457899999999999999999887
Q ss_pred HHHHHHHHhhccccCCCCCCCc---h-h------hccCCcccCCCccccccccceEEEEEeCC--------CCCC-C-CC
Q 016379 112 NVLNAIMAISLDFFQPPGPDVP---P-E------ISLDPRLYPYFKDCVGAVDGIHIPVMVGV--------DEQG-P-FR 171 (390)
Q Consensus 112 ~v~~~l~~~~~~~i~~P~~~~~---~-~------i~~~~~~~~~fp~~iG~IDgt~i~i~~P~--------~~~~-~-y~ 171 (390)
+. .+..... ...|..... . + ++.. .....++.-+-.+|-+.+....+. +... . ..
T Consensus 109 ~~--g~~~k~~--~~~~~~l~~~~~~~r~~~~~~~l~~-~~~~~~~~~Iv~~DE~~~~~~~~~~~~~w~~~g~~~~~~~~ 183 (345)
T 3hot_A 109 EM--GKIQKVG--RWVPHELNERQMERRKNTCEILLSR-YKRKSFLHRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTAR 183 (345)
T ss_dssp HT--TCEEEEC--CEESSCCCHHHHHHHHHHHHHHHHH-HHHSCCGGGEEEEEEEEEESCCCCCCEEEECSSSCCCCEEC
T ss_pred Hh--CCeeecc--ccccccCChhhhhhhHHHHHHHHHh-hCCcchHHhhhcccceeEEecCccceeeeccCCCCCCCCcC
Confidence 62 1111011 111211110 0 0 0000 000135566677888877653111 1110 0 11
Q ss_pred CCCCCceeeeeeeecCCcceeEeccCcccccccHHHHHHHHhh-------cCCCCC--CCCceeeccCCCCCC
Q 016379 172 NKSGLLSQNVLAACSFDLKFHYVLAGWEGSASDLRVLNSALTR-------RNKLQV--PEGKYYLVDNKYANM 235 (390)
Q Consensus 172 ~~k~~~s~~~q~v~d~d~~~~~v~~g~~Gs~~D~~vl~~sl~~-------~~~~~~--p~g~~~l~D~gYp~~ 235 (390)
...+...+.+.++.+.+|.+.+......|+.+ +..+.+.|.. ...... +.+..++-|.|=+-.
T Consensus 184 ~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~~h~ 255 (345)
T 3hot_A 184 PNRFGKKTMLCVWWDQSGVIYYELLKPGETVN-AARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPSHT 255 (345)
T ss_dssp CCTTCCEEEEEEEEESSSEEEEEEECSSCCCC-HHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCTTTT
T ss_pred ccCcCCcEEEEEEEcccCceeeEecCCCCccc-HHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCCccc
Confidence 11233467788888999976665554333443 5544433221 111111 234567788875433
No 265
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=47.16 E-value=15 Score=27.95 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=25.9
Q ss_pred hhcccc-cc--hhhhhhhc-ccchhhhhhhhHHHHHH
Q 016379 84 FIVGHN-LR--TRAVQELF-RYSGETISRHFNNVLNA 116 (390)
Q Consensus 84 ~~L~~~-~~--~~~l~~~f-gis~stv~~~~~~v~~~ 116 (390)
+.|..| .+ +.+++..+ |+|++|+++.+++..++
T Consensus 34 ~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 34 SVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp HHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 334444 55 89999999 99999999988877653
No 266
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=47.02 E-value=8 Score=28.21 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.4
Q ss_pred ccccchhhhhhhcccchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..|.+..++|...|||++|++++.+
T Consensus 19 ~~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 19 ELNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4578999999999999999999875
No 267
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=46.94 E-value=13 Score=26.42 Aligned_cols=33 Identities=15% Similarity=-0.017 Sum_probs=25.4
Q ss_pred HHHHhhhcccccchhhhhhhcccchhhhhhhhH
Q 016379 79 LAIFMFIVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 79 l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
+.-.|..+....++.++|...|||++|++++-+
T Consensus 17 ~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 17 LGELLRSARGDMSMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHHc
Confidence 444555555445889999999999999998765
No 268
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=46.87 E-value=8 Score=29.36 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.2
Q ss_pred hcccccchhhhhhhcccchhhhhhhhH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
+-..|.++.++|...|+|++|++++.+
T Consensus 20 r~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 20 LEPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345689999999999999999999764
No 269
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=46.87 E-value=9.4 Score=32.74 Aligned_cols=44 Identities=9% Similarity=0.250 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 117 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l 117 (390)
.++..+. -.|.+|+.|.+..+++...++|..||..++.++.+-|
T Consensus 149 ~LT~rE~--~vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 149 GLTDQER--TLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHH--HHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4666554 3456678899999999999999999999998877655
No 270
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=46.81 E-value=6.5 Score=32.97 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=23.9
Q ss_pred hcccccchhhhhhhcccchhhhhhhhH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
++..|.+...++..+|+|.+|++++++
T Consensus 154 ~~~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 154 MWQQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 445789999999999999999999875
No 271
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=45.73 E-value=9.9 Score=32.60 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=24.1
Q ss_pred hcccccchhhhhhhcccchhhhhhhhHH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
++..|.+...++..+|+|.+|++++++.
T Consensus 171 ~~~~G~s~~~Ia~~l~is~~tv~r~l~~ 198 (209)
T 2r0q_C 171 MLEEGQAISKIAKEVNITRQTVYRIKHD 198 (209)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 4457899999999999999999997753
No 272
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=45.50 E-value=15 Score=31.22 Aligned_cols=37 Identities=11% Similarity=0.271 Sum_probs=28.6
Q ss_pred HHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 77 EQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 77 ~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+++..|. ..+.+..++|..+|+|++||++.+++..+
T Consensus 23 ~~IL~~L~--~~~~s~~eLA~~lglS~stv~~~l~~Le~ 59 (192)
T 1uly_A 23 RKILKLLR--NKEMTISQLSEILGKTPQTIYHHIEKLKE 59 (192)
T ss_dssp HHHHHHHT--TCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34544554 35689999999999999999998877644
No 273
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=45.37 E-value=11 Score=27.16 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=23.7
Q ss_pred hcccccchhhhhhhcccchhhhhhhhH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
+...|.++.++|...|+|++|++++.+
T Consensus 22 r~~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 22 RQSKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 445689999999999999999999875
No 274
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=45.00 E-value=8.2 Score=28.83 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.9
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
-..|.++.++|...|+|++|++++.+
T Consensus 28 ~~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 28 DDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34588999999999999999999875
No 275
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=44.27 E-value=17 Score=31.63 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=24.7
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+.++..+|...++|++|+++.+++..+
T Consensus 27 ~~s~s~aA~~L~isq~avSr~I~~LE~ 53 (230)
T 3cta_A 27 YLTSSKLADMLGISQQSASRIIIDLEK 53 (230)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998877
No 276
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=44.05 E-value=21 Score=26.63 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=25.1
Q ss_pred hcccccchhhhhhhcccchhhhhhhhHHH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~~v 113 (390)
-+....+..++|..+|+|.+++++.|++.
T Consensus 14 ~~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 14 NWMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HTTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34556788999999999999999999987
No 277
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=43.98 E-value=7.6 Score=29.05 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.0
Q ss_pred chhhhhhhcccchhhhhhhhHHH
Q 016379 91 RTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 91 ~~~~l~~~fgis~stv~~~~~~v 113 (390)
+.++++..||+|++||++.+...
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L 59 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVL 59 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 68899999999999999877554
No 278
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=43.97 E-value=22 Score=27.83 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=23.1
Q ss_pred cchhhhhhhcccchhhhhhhhHHHHH
Q 016379 90 LRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+...+|...|+|.+||.+.++...+
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 68899999999999999998877755
No 279
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=43.76 E-value=12 Score=31.20 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 117 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l 117 (390)
.++..+.- .|.++..|.+..+++..+++|..||..++.++.+-|
T Consensus 142 ~Lt~rE~~--vl~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl 185 (208)
T 1yio_A 142 SLTGREQQ--VLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKL 185 (208)
T ss_dssp TSCHHHHH--HHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred hcCHHHHH--HHHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35554443 344567899999999999999999999888887765
No 280
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=43.70 E-value=14 Score=33.27 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHHHh
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~ 120 (390)
.+|+..+-++.|+++. |.++.++|...|++.+||...+.+....+...
T Consensus 111 ~Lp~~~R~v~~L~~~e-g~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~ 158 (286)
T 3n0r_A 111 RIAPRSRQAFLLTALE-GFTPTEAAQILDCDFGEVERLIGDAQAEIDAE 158 (286)
T ss_dssp HHSCHHHHHHHHHHTT-CCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred hCCHHHeeEEEEEeeC-CCCHHHHHHHhCcCHHHHHHHHHHHHhhhhcc
Confidence 5777888888887775 89999999999999999998888887777643
No 281
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=43.55 E-value=19 Score=27.06 Aligned_cols=29 Identities=7% Similarity=0.079 Sum_probs=24.6
Q ss_pred ccccchhhhhhhc-ccchhhhhhhhHHHHH
Q 016379 87 GHNLRTRAVQELF-RYSGETISRHFNNVLN 115 (390)
Q Consensus 87 ~~~~~~~~l~~~f-gis~stv~~~~~~v~~ 115 (390)
..+.++.+++..+ |++++|+++.+++..+
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCG 65 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 4458999999999 5999999998887655
No 282
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=42.99 E-value=19 Score=28.33 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=19.1
Q ss_pred chhhhhhhcccchhhhhhhhHHH
Q 016379 91 RTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 91 ~~~~l~~~fgis~stv~~~~~~v 113 (390)
+-+.++..||||++||.+.+...
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L 52 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLL 52 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 56789999999999999866543
No 283
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=42.96 E-value=34 Score=27.53 Aligned_cols=75 Identities=11% Similarity=0.013 Sum_probs=46.8
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhccCCcccc-------CCCCCHHHHHHHHhhhcc--cccchhhhhhhc---------
Q 016379 38 GQSERCLENFRMDKKVFYKLCDILQSKGLLRH-------TNRIKIEEQLAIFMFIVG--HNLRTRAVQELF--------- 99 (390)
Q Consensus 38 ~~d~~f~~~frms~~~F~~L~~~L~~~~~~~~-------~~~~~~~~~l~~~L~~L~--~~~~~~~l~~~f--------- 99 (390)
.+-.+.-+.|++++.++.+.+........... ...++.+..-.+ +.++. ...+...++..+
T Consensus 42 ~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I-~~~~~~~~~~s~~~i~~~l~~~~~~~~~ 120 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKI-GDYKRQNPTMFAWEIRDRLLAEGVCDND 120 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHH-HHHHHHCSSSCHHHHHHHHHHHTCSCTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHH-HHHHHHCccchHHHHHHHHHHhcccccC
Confidence 57778889999999999998877654322111 123444322222 22222 346777777766
Q ss_pred -ccchhhhhhhhHHH
Q 016379 100 -RYSGETISRHFNNV 113 (390)
Q Consensus 100 -gis~stv~~~~~~v 113 (390)
.+|.+||++++++.
T Consensus 121 ~~~S~sTV~r~L~~~ 135 (159)
T 2k27_A 121 TVPSVSSINRIIRTK 135 (159)
T ss_dssp TSCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHH
Confidence 48999999887654
No 284
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=42.85 E-value=51 Score=27.86 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=32.2
Q ss_pred hcccccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcccc
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFF 125 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~i 125 (390)
.++...+..+++..+|++..|+.+..+++.+.+....++.+
T Consensus 155 ~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~p~~~ 195 (207)
T 1c9b_A 155 ASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDF 195 (207)
T ss_dssp TSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHSCSSC
T ss_pred HHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhChHHH
Confidence 44556778999999999999999999988887765444443
No 285
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=42.81 E-value=8.9 Score=28.15 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=22.8
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
...|.++.++|...|+|++|++++.+
T Consensus 14 ~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 14 KSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34588999999999999999999775
No 286
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=42.54 E-value=25 Score=26.15 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=23.8
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVL 114 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~ 114 (390)
...+..++|..+|+|.+++++.|++..
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQL 45 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467788999999999999999999863
No 287
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=42.31 E-value=9.7 Score=34.33 Aligned_cols=44 Identities=5% Similarity=0.089 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHhhhccc---ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGH---NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~---~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.++.-++.+-.|..|+. +.+..+|+...|+++||++|+++....
T Consensus 25 ~v~sl~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~ 71 (275)
T 3mq0_A 25 TVPALRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE 71 (275)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46666776666776653 578999999999999999998887665
No 288
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=42.28 E-value=14 Score=30.14 Aligned_cols=40 Identities=8% Similarity=0.048 Sum_probs=31.6
Q ss_pred HHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 81 IFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 81 ~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
+|... .+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 26 lf~~~--~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 65 (190)
T 2v57_A 26 VLADH--PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALAR 65 (190)
T ss_dssp HHTTC--TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHc--CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 44444 78999999999999999999999887666654433
No 289
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=42.23 E-value=26 Score=28.48 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=23.7
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..++.++|..+|+|.+||.+.+++..+
T Consensus 17 ~~s~~~la~~lg~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 17 TLAVADLAKKVGLSTTPCWRRIQKMEE 43 (162)
T ss_dssp CSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468999999999999999998877655
No 290
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=42.17 E-value=63 Score=23.61 Aligned_cols=73 Identities=5% Similarity=0.031 Sum_probs=50.0
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhccCCccccCCCCCHHHHHHHHhhhcc-cccchhhhhhhccc-chhhhhhhhHHHH
Q 016379 38 GQSERCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVG-HNLRTRAVQELFRY-SGETISRHFNNVL 114 (390)
Q Consensus 38 ~~d~~f~~~frms~~~F~~L~~~L~~~~~~~~~~~~~~~~~l~~~L~~L~-~~~~~~~l~~~fgi-s~stv~~~~~~v~ 114 (390)
.+-++.-..++|++.+|.+++......... ..--..++..+...|. ++.+..++|...|- +.+..++.|++..
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~----~~~~~~Rl~~A~~lL~~~~~si~~iA~~~Gf~~~s~F~r~Fk~~~ 94 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIMFKKNFGIPFQ----DYLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKKYY 94 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHCcCHH----HHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 466788889999999999888776432110 1112344555555554 46899999999997 6777888887764
No 291
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=42.15 E-value=13 Score=28.50 Aligned_cols=25 Identities=16% Similarity=0.410 Sum_probs=20.9
Q ss_pred chhhhhhhcccchhhhhhhhHHHHH
Q 016379 91 RTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 91 ~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+-++++..||||++||.+.+.....
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~ 59 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLD 59 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6788999999999999887766544
No 292
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=41.93 E-value=12 Score=29.98 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=23.6
Q ss_pred hcccccchhhhhhhcccchhhhhhhhH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
+...|.++.++|...|+|+++++++.+
T Consensus 77 R~~~glTq~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 77 RMKKGFTQSELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345689999999999999999999865
No 293
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=41.87 E-value=9.7 Score=28.56 Aligned_cols=26 Identities=8% Similarity=-0.089 Sum_probs=22.8
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
-..|.++.++|...|+|++|++++.+
T Consensus 11 ~~~gltq~~lA~~~gis~~~i~~~e~ 36 (111)
T 1b0n_A 11 KEKGYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35688999999999999999999765
No 294
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=41.69 E-value=14 Score=35.87 Aligned_cols=44 Identities=5% Similarity=0.208 Sum_probs=33.3
Q ss_pred CCCHHHH-HHHHhhhcc-cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEEQ-LAIFMFIVG-HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~~-l~~~L~~L~-~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+- ++..|+.-. .+.+..+|+...+++++|+++++++..+
T Consensus 401 ~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~ 446 (487)
T 1hsj_A 401 NLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKD 446 (487)
T ss_dssp CCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5777654 555554321 4689999999999999999998887654
No 295
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=41.25 E-value=5.6 Score=33.75 Aligned_cols=36 Identities=8% Similarity=0.096 Sum_probs=0.0
Q ss_pred HhhhcccccchhhhhhhcccchhhhhhhhHHHHHHH
Q 016379 82 FMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 117 (390)
Q Consensus 82 ~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l 117 (390)
...++..|.+...+|..+|+|.+|++++++..-.++
T Consensus 151 i~~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~~ 186 (193)
T 3plo_X 151 AGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRAHI 186 (193)
T ss_dssp ------------------------------------
T ss_pred HHHHHHCCCCHHHHHHHHCcCHHHHHHHHhhhHHhh
Confidence 334556799999999999999999999987654443
No 296
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=41.11 E-value=25 Score=25.22 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhcccccchhhhhhhcccchh-hhhhhhHHHHH
Q 016379 75 IEEQLAIFMFIVGHNLRTRAVQELFRYSGE-TISRHFNNVLN 115 (390)
Q Consensus 75 ~~~~l~~~L~~L~~~~~~~~l~~~fgis~s-tv~~~~~~v~~ 115 (390)
..++++.+|...+ +.+..+||..+||+.. +|.+.+.....
T Consensus 12 ~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~Le~ 52 (79)
T 1xmk_A 12 IKEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLIDMER 52 (79)
T ss_dssp HHHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 4566776666665 6889999999999999 99887766544
No 297
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=40.84 E-value=9.9 Score=31.77 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=24.4
Q ss_pred hhcccccchhhhhhhcccchhhhhhhhH
Q 016379 84 FIVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 84 ~~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
++..+|.++.++|...|||++|++++-+
T Consensus 98 lR~~~glTQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 98 WMHRNNLSLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4567899999999999999999988654
No 298
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=40.79 E-value=5.8 Score=36.34 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=0.0
Q ss_pred cchhhhhhhcccchhhhhhhhHH
Q 016379 90 LRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~~~ 112 (390)
.+.+++|...|||.+||||+++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 46789999999999999999985
No 299
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=40.67 E-value=5.8 Score=36.29 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=0.0
Q ss_pred chhhhhhhcccchhhhhhhhHH
Q 016379 91 RTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 91 ~~~~l~~~fgis~stv~~~~~~ 112 (390)
+.++||...|||.+||||+++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5789999999999999999986
No 300
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=40.52 E-value=9.8 Score=28.88 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=22.7
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
-..|.++.++|...|+|++|++++-+
T Consensus 19 ~~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 19 KEHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34688999999999999999998765
No 301
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=40.38 E-value=23 Score=26.71 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.4
Q ss_pred cccccchhhhhhhcccchhhhhhhhHHH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~~v 113 (390)
+....+..++|..+|+|.+++++.|++.
T Consensus 20 ~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 20 IEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455788999999999999999999987
No 302
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=40.25 E-value=12 Score=27.81 Aligned_cols=35 Identities=6% Similarity=-0.010 Sum_probs=26.7
Q ss_pred HHHHHHhhh--cccccchhhhhhhcccchhhhhhhhH
Q 016379 77 EQLAIFMFI--VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 77 ~~l~~~L~~--L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..+.-.|.. ...|.++.++|...|||++|++++-+
T Consensus 27 ~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 27 SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 344444443 34789999999999999999998765
No 303
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=40.06 E-value=13 Score=29.41 Aligned_cols=28 Identities=4% Similarity=0.075 Sum_probs=25.4
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.|.+..++|..||+|..+|.+|+++.-.
T Consensus 91 ~G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999987755
No 304
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=40.04 E-value=18 Score=31.68 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=30.7
Q ss_pred HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 79 LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 79 l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
+-.|+... ...++...|+..++|+++||+.+++.-+.|-
T Consensus 6 l~~f~~v~-~~gs~s~AA~~L~isq~avS~~i~~LE~~lg 44 (294)
T 1ixc_A 6 LKYFIAVA-EAGNMAAAAKRLHVSQPPITRQMQALEADLG 44 (294)
T ss_dssp HHHHHHHH-HHSSHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HcCCHHHHHHHhCCCcchHHHHHHHHHHHHC
Confidence 33333333 3458999999999999999999999998875
No 305
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=40.02 E-value=6 Score=36.33 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=0.0
Q ss_pred cchhhhhhhcccchhhhhhhhHH
Q 016379 90 LRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~~~ 112 (390)
.+.++||...|||.+||||+++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46789999999999999999974
No 306
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=39.92 E-value=12 Score=28.57 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.4
Q ss_pred hcccccchhhhhhhcccchhhhhhhhH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
+...|.++.++|...|+|++|++++-+
T Consensus 32 R~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 32 RTDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 345689999999999999999999765
No 307
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=39.91 E-value=6.1 Score=36.59 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=0.0
Q ss_pred cchhhhhhhcccchhhhhhhhHH
Q 016379 90 LRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~~~ 112 (390)
.+.++||...|||.+||||+++.
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
Confidence 36789999999999999999986
No 308
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=39.64 E-value=6.2 Score=36.28 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=0.0
Q ss_pred cchhhhhhhcccchhhhhhhhHH
Q 016379 90 LRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~~~ 112 (390)
.+.+++|...|||.+||||+++.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 46789999999999999999983
No 309
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=39.63 E-value=27 Score=29.95 Aligned_cols=40 Identities=10% Similarity=0.272 Sum_probs=32.8
Q ss_pred HHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 76 EEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 76 ~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
.+..+-+++.|..+.+-+++|...|+|++||+..+++..+
T Consensus 17 ~EdYLk~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL~e 56 (200)
T 2p8t_A 17 VEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSH 56 (200)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4566666777777788999999999999999998877655
No 310
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=39.63 E-value=20 Score=29.26 Aligned_cols=30 Identities=3% Similarity=-0.032 Sum_probs=24.7
Q ss_pred cccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
-+...+..++|..+|+|++||.+.+++...
T Consensus 24 ~~~~ls~~eLa~~lgvSr~~vr~al~~L~~ 53 (163)
T 2gqq_A 24 KDGRISNVELSKRVGLSPTPCLERVRRLER 53 (163)
T ss_dssp HCSSCCTTGGGTSSSCCTTTSSSTHHHHHH
T ss_pred hCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344578999999999999999998877644
No 311
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=39.42 E-value=15 Score=28.75 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=20.4
Q ss_pred chhhhhhhcccchhhhhhhhHHHHH
Q 016379 91 RTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 91 ~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+-+.++..||||++||.+.+.....
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~~ 63 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELER 63 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4788999999999999987765543
No 312
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=39.32 E-value=6.3 Score=36.15 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=0.0
Q ss_pred chhhhhhhcccchhhhhhhhHH
Q 016379 91 RTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 91 ~~~~l~~~fgis~stv~~~~~~ 112 (390)
+.+++|...|||.+||||+++.
T Consensus 5 ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 5 TMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHCC
Confidence 5789999999999999999975
No 313
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=39.14 E-value=6.3 Score=36.43 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=0.0
Q ss_pred cchhhhhhhcccchhhhhhhhHHH
Q 016379 90 LRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~~~v 113 (390)
.+.++||...|||.+||||+++.-
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp ------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCC
Confidence 357899999999999999999863
No 314
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=38.74 E-value=12 Score=29.22 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=23.0
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
...|.++.++|...|+|+++++++.+
T Consensus 50 ~~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 50 DRARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35689999999999999999999765
No 315
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=38.20 E-value=6.7 Score=36.32 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=0.0
Q ss_pred cchhhhhhhcccchhhhhhhhHH
Q 016379 90 LRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 90 ~~~~~l~~~fgis~stv~~~~~~ 112 (390)
.+.++||...|||.+||||+++.
T Consensus 13 ~ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 13 VTMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHhCCCHHHHHHHHCC
Confidence 35789999999999999999974
No 316
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=37.68 E-value=10 Score=33.04 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=25.3
Q ss_pred hhhcccccchhhhhhhcccchhhhhhhhH
Q 016379 83 MFIVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 83 L~~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
-++..+|.++.+||+..|||+|+||++.+
T Consensus 38 ~~r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 38 GYMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 34556799999999999999999999886
No 317
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=37.65 E-value=13 Score=28.73 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=23.2
Q ss_pred hcccccchhhhhhhcccchhhhhhhhH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
+...|.++.++|...|+|++|++++-+
T Consensus 21 R~~~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 21 RKKQGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 345789999999999999999998754
No 318
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=37.40 E-value=12 Score=28.42 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=29.1
Q ss_pred CHHHHHHHHhhhc--ccccchhhhhhhcccchhhhhhhhH
Q 016379 74 KIEEQLAIFMFIV--GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 74 ~~~~~l~~~L~~L--~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
.....+.--|..+ ..|.++.++|...|+|++|++++-+
T Consensus 17 ~~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 17 DLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4445555555544 4789999999999999999998754
No 319
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=37.16 E-value=18 Score=30.85 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 117 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l 117 (390)
.++..+.-. |.+|+.|.+..+++...++|..||..++.++.+-|
T Consensus 159 ~Lt~rE~~v--L~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL 202 (225)
T 3klo_A 159 KLTKREQQI--IKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKI 202 (225)
T ss_dssp TSCHHHHHH--HHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTTTS
T ss_pred cCCHHHHHH--HHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 466655433 44577899999999999999999999888775533
No 320
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=37.09 E-value=74 Score=26.60 Aligned_cols=76 Identities=11% Similarity=0.175 Sum_probs=49.2
Q ss_pred HHHhhcCCCHHHHHHHHHHhccCCccccCCCCCHHHHHHHHhh----hcccccchhhhhhhcccchhhhhhhhHHHHHHH
Q 016379 42 RCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMF----IVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 117 (390)
Q Consensus 42 ~f~~~frms~~~F~~L~~~L~~~~~~~~~~~~~~~~~l~~~L~----~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l 117 (390)
++-..+++++.+-..-...++........++.+++.-.+..|+ .-+.+.+.++++..++++..++.+.++.+++.|
T Consensus 18 ~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i~~~~~~l~~~L 97 (200)
T 1ais_B 18 RITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNL 97 (200)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 4455677877666555444443222222344555555544444 345678999999999999999998888777654
No 321
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=36.90 E-value=26 Score=28.57 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=28.3
Q ss_pred HHHHHHhhhcccc---cchhhhhhhcc-cchhhhhhhhHHHHH
Q 016379 77 EQLAIFMFIVGHN---LRTRAVQELFR-YSGETISRHFNNVLN 115 (390)
Q Consensus 77 ~~l~~~L~~L~~~---~~~~~l~~~fg-is~stv~~~~~~v~~ 115 (390)
.++.++-..|++. .+..+|...++ +|++||++.++.+.+
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~e 72 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVD 72 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 5555555555553 45677888888 999999998877655
No 322
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=36.84 E-value=31 Score=30.49 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=33.2
Q ss_pred CCCHHH-HHHHHhhhccc-ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEE-QLAIFMFIVGH-NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~-~l~~~L~~L~~-~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
++++.+ .++..|+.-.. +.+..+|+...+++++|+++++++...
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~ 200 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKK 200 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 466644 45555554442 489999999999999999999887765
No 323
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=36.41 E-value=97 Score=22.75 Aligned_cols=73 Identities=8% Similarity=0.028 Sum_probs=50.8
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhccCCccccCCCCCHHHHHHHHhhhccccc---chhhhhhhcccc-hhhhhhhhHHH
Q 016379 38 GQSERCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVGHNL---RTRAVQELFRYS-GETISRHFNNV 113 (390)
Q Consensus 38 ~~d~~f~~~frms~~~F~~L~~~L~~~~~~~~~~~~~~~~~l~~~L~~L~~~~---~~~~l~~~fgis-~stv~~~~~~v 113 (390)
.+-++.-..++|++..|.++......... ...--..++..+...|..+. +..++|...|-+ .+..++.|++.
T Consensus 19 ~~~~~lA~~~~~s~~~l~r~fk~~~G~s~----~~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~ 94 (108)
T 3mn2_A 19 ITIEKLTALTGISSRGIFKAFQRSRGYSP----MAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARDYRDM 94 (108)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHTSSCH----HHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHhCcCH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45677788899999999888877643211 01222345666677777664 899999999974 77788888776
Q ss_pred H
Q 016379 114 L 114 (390)
Q Consensus 114 ~ 114 (390)
.
T Consensus 95 ~ 95 (108)
T 3mn2_A 95 F 95 (108)
T ss_dssp H
T ss_pred H
Confidence 4
No 324
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=36.31 E-value=37 Score=24.95 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=23.5
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHH
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVL 114 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~ 114 (390)
..+..++|..+|+|.+++++.|++..
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~ 44 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNF 44 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 67889999999999999999998873
No 325
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=36.00 E-value=33 Score=30.35 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=33.6
Q ss_pred CCCHHH-HHHHHhhhcc-cccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 72 RIKIEE-QLAIFMFIVG-HNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 72 ~~~~~~-~l~~~L~~L~-~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+++..+ .++..||.-. .|.+..+++...+++.+|+++++++..+
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~ 76 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVK 76 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 466654 4666666543 4789999999999999999998887654
No 326
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=35.90 E-value=15 Score=30.15 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=28.6
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++||..-|||++|++++|..--..+....
T Consensus 31 ~~~t~~~IA~~agvsk~tlY~~F~sKe~L~~~~~ 64 (192)
T 2fq4_A 31 KAVTVDKIAERAKVSKATIYKWWPNKAAVVMDGF 64 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred ccccHHHHHHHcCCCHHHHHHHCCCHHHHHHHHH
Confidence 4689999999999999999999987777665443
No 327
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=35.86 E-value=18 Score=28.30 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=19.8
Q ss_pred chhhhhhhcccchhhhhhhhHHH
Q 016379 91 RTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 91 ~~~~l~~~fgis~stv~~~~~~v 113 (390)
+-+.++..||||++||.+.+...
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKEL 59 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 67899999999999999877654
No 328
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=35.71 E-value=16 Score=28.05 Aligned_cols=27 Identities=4% Similarity=-0.077 Sum_probs=23.3
Q ss_pred hcccccchhhhhhhcccchhhhhhhhH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
+...|.++.++|...|||+++++++-+
T Consensus 16 R~~~glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 16 REERRITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp HHTTTCCHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 345789999999999999999998754
No 329
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=35.44 E-value=15 Score=31.44 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.7
Q ss_pred cccccchhhhhhhcccchhhhhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
...|.++.++|...|+|+|+|+++.+
T Consensus 40 ~~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 40 QQHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCChHHHHHHHh
Confidence 34688999999999999999999854
No 330
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=35.41 E-value=27 Score=27.19 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=30.7
Q ss_pred HHHHHHHhhhcc--cccchhhhhhhcccchhhhhhhhHHHH
Q 016379 76 EEQLAIFMFIVG--HNLRTRAVQELFRYSGETISRHFNNVL 114 (390)
Q Consensus 76 ~~~l~~~L~~L~--~~~~~~~l~~~fgis~stv~~~~~~v~ 114 (390)
...+.-++.+|. .+.+..++|..+|+|.+++++.|++..
T Consensus 78 ~~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~~~ 118 (133)
T 1u8b_A 78 LDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATT 118 (133)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344555565664 578899999999999999999998764
No 331
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=35.37 E-value=18 Score=27.21 Aligned_cols=25 Identities=4% Similarity=-0.000 Sum_probs=22.5
Q ss_pred ccccchhhhhhhcccchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..|.++.++|...|+|++|++++.+
T Consensus 47 ~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 5689999999999999999999765
No 332
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=34.97 E-value=33 Score=26.57 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.8
Q ss_pred cccccchhhhhhhcccchhhhhhhhHHHH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFNNVL 114 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~~v~ 114 (390)
+....+..++|..+|+|.+++++.|++.+
T Consensus 24 ~~~~~sl~~lA~~~~~S~~~l~r~fk~~~ 52 (129)
T 1bl0_A 24 LESPLSLEKVSERSGYSKWHLQRMFKKET 52 (129)
T ss_dssp TTSCCCCHHHHHHSSSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34467889999999999999999999873
No 333
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=34.86 E-value=30 Score=26.82 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=23.1
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+..++++.+|+|++++.+++....+
T Consensus 26 ~~s~~ela~~~~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 26 PTSLKSIAQTNNLSEHYLEQLVSPLRN 52 (129)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467899999999999999998876654
No 334
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=34.86 E-value=18 Score=27.72 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=21.0
Q ss_pred ccchhhhhhhcccchhhhhhhhHH
Q 016379 89 NLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
..+..++|...|+|.+||.|..++
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHH
Confidence 578899999999999999987654
No 335
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=34.65 E-value=46 Score=28.81 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=18.4
Q ss_pred hhhhhhhcccchhhhhhhhHHHH
Q 016379 92 TRAVQELFRYSGETISRHFNNVL 114 (390)
Q Consensus 92 ~~~l~~~fgis~stv~~~~~~v~ 114 (390)
-+++++.||||+++|.+.+....
T Consensus 31 E~~La~~lgVSRtpVREAL~~L~ 53 (239)
T 2di3_A 31 ERALSETLGVSRSSLREALRVLE 53 (239)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 45789999999999987665543
No 336
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=34.31 E-value=28 Score=25.44 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=21.2
Q ss_pred cccchhhhhhhcccchhhhhhhhHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v 113 (390)
++......|...|||++|+++.+++.
T Consensus 63 ~~gn~~~aA~~LGIsr~tL~rklkk~ 88 (91)
T 1ntc_A 63 TQGHKQEAARLLGWGAATLTAKLKEL 88 (91)
T ss_dssp TTTCTTHHHHHTTCCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 44556789999999999999988764
No 337
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=34.13 E-value=20 Score=28.28 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHhh------hccccc---chhhhhhhcccchhhhhhhhHHH
Q 016379 72 RIKIEEQLAIFMF------IVGHNL---RTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 72 ~~~~~~~l~~~L~------~L~~~~---~~~~l~~~fgis~stv~~~~~~v 113 (390)
.+|.-+|+.-.|. .|.-|. +-+.+|..||||++||.+.+...
T Consensus 12 ~~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L 62 (134)
T 4ham_A 12 QLPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQEL 62 (134)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555554443 234443 46789999999999999866544
No 338
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=33.69 E-value=19 Score=25.19 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.4
Q ss_pred ccchhhhhhhcccchhhhhhhhH
Q 016379 89 NLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..+..++|..+|||++++.+.++
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~ 38 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAE 38 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHH
T ss_pred eeCHHHHHHHHCcCHHHHHHHHH
Confidence 35678999999999999998664
No 339
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=33.51 E-value=27 Score=29.84 Aligned_cols=29 Identities=3% Similarity=0.033 Sum_probs=25.3
Q ss_pred ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+.+..+++..+|+|.+|+++.++....
T Consensus 26 ~~~~s~~eLa~~l~is~stvs~hLk~Le~ 54 (202)
T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEHLRILEE 54 (202)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45688999999999999999998887655
No 340
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=32.98 E-value=22 Score=31.36 Aligned_cols=39 Identities=10% Similarity=0.028 Sum_probs=29.2
Q ss_pred HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 79 LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 79 l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
+-.|+.. +...++...|+..++|+|+||+.+++.-+.+-
T Consensus 9 l~~f~~v-~~~~s~s~AA~~L~isq~avS~~i~~LE~~lg 47 (306)
T 3fzv_A 9 LKYFVTT-VECGSVAEASRKLYIAQPSISTAVKGLEESFG 47 (306)
T ss_dssp HHHHHHH-HHSSSHHHHHHHHTCCC-CHHHHHHHHHHHC-
T ss_pred HHHHHHH-HHhCCHHHHHHHhCCCchHHHHHHHHHHHHhC
Confidence 3344433 33458999999999999999999999988875
No 341
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=32.97 E-value=52 Score=26.07 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=23.4
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
+.+...+|..+|+|.++|.+++...++
T Consensus 51 ~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 51 FPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp SCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468899999999999999998877765
No 342
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=32.92 E-value=26 Score=31.03 Aligned_cols=31 Identities=6% Similarity=0.081 Sum_probs=27.6
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
...++...|+..++|+++||+.+++.-+.|-
T Consensus 23 ~~gs~s~AA~~L~isq~avS~~I~~LE~~lg 53 (310)
T 2esn_A 23 RHRNVGTAASELAISASAFSHALGRLRQGLD 53 (310)
T ss_dssp HHSSHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHhCCChHHHHHHHHHHHHhhC
Confidence 3458999999999999999999999998885
No 343
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=32.56 E-value=27 Score=30.06 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=26.5
Q ss_pred HHHHhhhc--ccccchhhhhhhcccchhhhhhhhHH
Q 016379 79 LAIFMFIV--GHNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 79 l~~~L~~L--~~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
+.-.|..+ ..|.++.++|..+|+|++|++++.+.
T Consensus 18 ~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 18 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp HHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 44444433 45789999999999999999998875
No 344
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=32.28 E-value=15 Score=29.32 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=28.8
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 24 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 58 (170)
T 3egq_A 24 EVSIEEIAREAKVSKSLIFYHFESKQKLLEEAVMH 58 (170)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCchhHHHHcCCHHHHHHHHHHH
Confidence 57899999999999999999998877666554433
No 345
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.05 E-value=30 Score=28.80 Aligned_cols=40 Identities=3% Similarity=0.047 Sum_probs=31.4
Q ss_pred HHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 81 IFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 81 ~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
+|...= .+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 32 lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~ 71 (215)
T 2hku_A 32 LFLEHG-EGVPITQICAAAGAHPNQVTYYYGSKERLFVEVA 71 (215)
T ss_dssp HHHHHC-TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHhC-CCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 333344 6799999999999999999999987766665443
No 346
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=31.83 E-value=17 Score=29.41 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=28.2
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 60 (188)
T 3qkx_A 27 NQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFA 60 (188)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHH
Confidence 3588999999999999999999987766665433
No 347
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=31.83 E-value=16 Score=29.99 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=29.6
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 66 (202)
T 3lwj_A 31 YNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLED 66 (202)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHHHHcCCHHHHHHHHHHH
Confidence 368999999999999999999998877766554433
No 348
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=31.71 E-value=22 Score=28.34 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=29.0
Q ss_pred HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHH
Q 016379 78 QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 117 (390)
Q Consensus 78 ~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l 117 (390)
++-+|+... ...++...|...++|+++|++.+++.-..+
T Consensus 28 ~L~~f~av~-e~gS~s~AA~~L~iSqsavS~~I~~LE~~l 66 (135)
T 2ijl_A 28 KVELMQLIA-ETGSISAAGRAMDMSYRRAWLLVDALNHMF 66 (135)
T ss_dssp HHHHHHHHH-HHSCHHHHHHHTTCCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHH-HhCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 344444333 345889999999999999999998876655
No 349
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=31.56 E-value=22 Score=29.71 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=30.1
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhccc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 124 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~ 124 (390)
.+.+.++|+..-|||++|++++|..--..+..+...+
T Consensus 31 ~~~ti~~Ia~~Agvs~~t~Y~~F~sK~~Ll~~~~~~~ 67 (220)
T 3lsj_A 31 GSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAEV 67 (220)
T ss_dssp GGCCHHHHHHHHTSCGGGGTTTCSSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHH
Confidence 4689999999999999999999998777666544433
No 350
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=31.38 E-value=34 Score=26.19 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=29.5
Q ss_pred HHHHHHHhhhcccccchhhhhhhc--ccchhhhhhhhHHHHHH
Q 016379 76 EEQLAIFMFIVGHNLRTRAVQELF--RYSGETISRHFNNVLNA 116 (390)
Q Consensus 76 ~~~l~~~L~~L~~~~~~~~l~~~f--gis~stv~~~~~~v~~~ 116 (390)
..+++-.|..- ...+..++|..+ |+|.++|++.++...+.
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 34454444332 268899999999 99999999998877664
No 351
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=31.25 E-value=41 Score=25.05 Aligned_cols=35 Identities=9% Similarity=0.085 Sum_probs=27.9
Q ss_pred HHHHHhhhcccccchhhhhh-hcccchhhhhhhhHHH
Q 016379 78 QLAIFMFIVGHNLRTRAVQE-LFRYSGETISRHFNNV 113 (390)
Q Consensus 78 ~l~~~L~~L~~~~~~~~l~~-~fgis~stv~~~~~~v 113 (390)
.++++|..-. ..+..++++ ..++.+||++|-+.-.
T Consensus 20 siL~~L~~~~-~~t~~~Lae~~l~~drstvsrnl~~L 55 (95)
T 1bja_A 20 TILITIAKKD-FITAAEVREVHPDLGNAVVNSNIGVL 55 (95)
T ss_dssp HHHHHHHHST-TBCHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CCCHHHHHHHHhcccHHHHHHHHHHH
Confidence 3556666666 788999999 9999999999977544
No 352
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=31.13 E-value=36 Score=22.82 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=20.3
Q ss_pred cccchhhhhhhcccchhhhhhhhHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
++.....+|...|||++|+++.+++
T Consensus 31 ~~gn~~~aA~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 31 YDYDLKRTAEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp TTTCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3445678999999999999997764
No 353
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=31.11 E-value=43 Score=26.40 Aligned_cols=29 Identities=3% Similarity=0.103 Sum_probs=24.8
Q ss_pred ccccchhhhhhhc-ccchhhhhhhhHHHHH
Q 016379 87 GHNLRTRAVQELF-RYSGETISRHFNNVLN 115 (390)
Q Consensus 87 ~~~~~~~~l~~~f-gis~stv~~~~~~v~~ 115 (390)
..+.++.+++... |||.+++++.+++...
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~ 66 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEA 66 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 4457899999999 9999999998877655
No 354
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=31.03 E-value=29 Score=27.91 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=28.8
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 29 ~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 63 (191)
T 3on4_A 29 NAFSFKDIATAINIKTASIHYHFPSKEDLGVAVIS 63 (191)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHHH
Confidence 46899999999999999999999877666654443
No 355
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=30.97 E-value=39 Score=25.68 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=23.7
Q ss_pred cccccchhhhhhhcccchhhhhhhhHHH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~~v 113 (390)
+....+..++|..+|+|.+++++.|++.
T Consensus 20 ~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (120)
T 3mkl_A 20 IAHEWTLARIASELLMSPSLLKKKLREE 47 (120)
T ss_dssp TTSCCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 3456788999999999999999998773
No 356
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=30.95 E-value=35 Score=27.74 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=30.4
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhccc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 124 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~ 124 (390)
.+.+.++|+..-|||++|++++|..--..+..+...+
T Consensus 27 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~ 63 (206)
T 3dew_A 27 YGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQ 63 (206)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 3689999999999999999999988777776544433
No 357
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=30.50 E-value=13 Score=29.92 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=28.1
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 32 ~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 65 (177)
T 3kkc_A 32 KITVQDVIGLANVGRSTFYSHYESKEVLLKELCE 65 (177)
T ss_dssp TCCHHHHHHHHCCCHHHHTTTCSSTHHHHHHHHH
T ss_pred HhhHHHHHHHhCCcHhhHHHHcCCHHHHHHHHHH
Confidence 5789999999999999999999877766654433
No 358
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=30.49 E-value=74 Score=23.49 Aligned_cols=73 Identities=7% Similarity=-0.063 Sum_probs=49.6
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhccCCccccCCCCCHHHHHHHHhhhcc-cccchhhhhhhccc-chhhhhhhhHHHH
Q 016379 38 GQSERCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVG-HNLRTRAVQELFRY-SGETISRHFNNVL 114 (390)
Q Consensus 38 ~~d~~f~~~frms~~~F~~L~~~L~~~~~~~~~~~~~~~~~l~~~L~~L~-~~~~~~~l~~~fgi-s~stv~~~~~~v~ 114 (390)
.+-++.-..++|++..|.++.......... ..--..++..+...|. ++.+..+||...|- +.+..++.|++..
T Consensus 22 ~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~----~~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~ 96 (108)
T 3oou_A 22 MSLKTLGNDFHINAVYLGQLFQKEMGEHFT----DYLNRYRVNYAKEELLQTKDNLTIIAGKSGYTDMAYFYRQFKKHT 96 (108)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHCcCHH----HHHHHHHHHHHHHHHHcCCCCHHHHHHHcCCCChHHHHHHHHHHh
Confidence 456778888999999998888766431110 1111234555555554 57899999999998 6788888888764
No 359
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=30.46 E-value=34 Score=27.82 Aligned_cols=35 Identities=6% Similarity=0.035 Sum_probs=28.8
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 26 ~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~av~~ 60 (192)
T 2zcm_A 26 DGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVE 60 (192)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHH
Confidence 46899999999999999999999877666654443
No 360
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=30.31 E-value=1.8e+02 Score=22.14 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=27.0
Q ss_pred HHHhHHHHHHHHHHhhchhhhcCCCCCccchhHHHHHHHHHHh
Q 016379 271 LLRNATDRIFGALKERFPILLSAPPYPLQTQVKLVVAACALHN 313 (390)
Q Consensus 271 ~~R~~VE~~fg~LK~rf~iL~~~~~~~~~~~~~ii~a~~~LhN 313 (390)
.....|||.++.||..++.+.. ..+.....+...+..+|
T Consensus 90 ~~ng~~Er~~~~lk~~~~~~~~----~~~~~~~~l~~~~~~~N 128 (152)
T 3kks_A 90 QSQGVVERAHRDLKDRLAAYQG----DCETVEAALSLALVSLN 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGG----GCSSHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHc
Confidence 3457899999999998876652 12345555666667788
No 361
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=30.16 E-value=35 Score=27.51 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=29.3
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 21 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 56 (194)
T 3bqz_B 21 NATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNI 56 (194)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHHH
Confidence 468999999999999999999998776666544433
No 362
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=30.14 E-value=18 Score=29.75 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=28.5
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 33 ~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 66 (195)
T 2iu5_A 33 QISVSDIMQTAKIRRQTFYNYFQNQEELLSWIFE 66 (195)
T ss_dssp GCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHHH
T ss_pred eeCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 5789999999999999999999887776655443
No 363
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=30.01 E-value=17 Score=29.77 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=29.5
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 28 ~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~ 63 (193)
T 2dg8_A 28 ARVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFGR 63 (193)
T ss_dssp GGCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHHHH
T ss_pred hhccHHHHHHHhCCCchhhheeCCCHHHHHHHHHHH
Confidence 368999999999999999999998877766654433
No 364
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=29.92 E-value=32 Score=30.23 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=28.7
Q ss_pred cccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
++...++...|+..++|+++||+.+++.-+.+.
T Consensus 14 v~~~gs~t~AA~~L~isq~avS~~i~~LE~~lg 46 (306)
T 3hhg_A 14 VVESGSFSRAAEQLAMANSAVSRIVKRLEEKLG 46 (306)
T ss_dssp HHHSSSHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 344558999999999999999999999998885
No 365
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=29.89 E-value=18 Score=29.27 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=28.3
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 28 ~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 61 (195)
T 3ppb_A 28 HGTSTATIAREAGVATGTLFHHFPSKEQLLEQLF 61 (195)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHH
Confidence 3578999999999999999999987777665443
No 366
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=29.62 E-value=34 Score=31.24 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=26.8
Q ss_pred HHHhhhcccccchhhhhhh----cc---cchhhhhhhhHHHHH
Q 016379 80 AIFMFIVGHNLRTRAVQEL----FR---YSGETISRHFNNVLN 115 (390)
Q Consensus 80 ~~~L~~L~~~~~~~~l~~~----fg---is~stv~~~~~~v~~ 115 (390)
.+.+..+..|.+...++.. || +|.+||.++++++..
T Consensus 13 ~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~ 55 (345)
T 3hot_A 13 TVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS 55 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence 4455566677777776666 55 999999999998753
No 367
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=29.47 E-value=20 Score=29.00 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=31.1
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcccc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFF 125 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~i 125 (390)
+.+.++|+..-|||++|++++|..--..+..+...+.
T Consensus 27 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~ 63 (186)
T 2jj7_A 27 GTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYG 63 (186)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHhCCChhhhhhhcCCHHHHHHHHHHHHH
Confidence 5899999999999999999999988777766555543
No 368
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=29.46 E-value=35 Score=27.56 Aligned_cols=34 Identities=6% Similarity=0.170 Sum_probs=28.1
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 26 ~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~a~~ 59 (178)
T 4hku_A 26 EKTTLYDIASNLNVTHAALYKHYRNKEDLFQKLA 59 (178)
T ss_dssp GGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHHH
T ss_pred ccccHHHHHHHhCcCHhHHHHHCCCHHHHHHHHH
Confidence 4689999999999999999999987666655443
No 369
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=29.39 E-value=21 Score=27.87 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=19.0
Q ss_pred chhhhhhhcccchhhhhhhhHHHH
Q 016379 91 RTRAVQELFRYSGETISRHFNNVL 114 (390)
Q Consensus 91 ~~~~l~~~fgis~stv~~~~~~v~ 114 (390)
+-+.++..||||++||.+.+....
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~ 60 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQ 60 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 577899999999999998766543
No 370
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=29.03 E-value=16 Score=29.52 Aligned_cols=35 Identities=3% Similarity=0.182 Sum_probs=28.6
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 27 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 61 (183)
T 1zk8_A 27 QEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGI 61 (183)
T ss_dssp GGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHH
T ss_pred cccCHHHHHHHcCCCchHHHHHcCCHHHHHHHHHH
Confidence 35899999999999999999999876666654443
No 371
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.94 E-value=34 Score=26.72 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=20.6
Q ss_pred ccchhhhhhhc-----ccchhhhhhhhHHHHH
Q 016379 89 NLRTRAVQELF-----RYSGETISRHFNNVLN 115 (390)
Q Consensus 89 ~~~~~~l~~~f-----gis~stv~~~~~~v~~ 115 (390)
..+..+|.... ++|.+||+|.++.+.+
T Consensus 26 ~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e 57 (131)
T 2o03_A 26 FRSAQELHDELRRRGENIGLTTVYRTLQSMAS 57 (131)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 46677777766 8999999998876644
No 372
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=28.88 E-value=26 Score=26.58 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.4
Q ss_pred ccchhhhhhhcccchhhhhhhhHHH
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v 113 (390)
..+..++|...|+|.+||.|..+++
T Consensus 35 ~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 35 NMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 4789999999999999999866553
No 373
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=28.84 E-value=12 Score=30.49 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred cccccchhhhhhhcccchhhhhhh
Q 016379 86 VGHNLRTRAVQELFRYSGETISRH 109 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~ 109 (390)
...|.++.++|...|+|++|++++
T Consensus 11 ~~~gltq~elA~~lgis~~~vs~~ 34 (158)
T 2p5t_A 11 KTHDLTQLEFARIVGISRNSLSRY 34 (158)
T ss_dssp ------------------------
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 346889999999999999999997
No 374
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=28.82 E-value=20 Score=29.30 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=29.0
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 67 (203)
T 3f1b_A 33 HETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQ 67 (203)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHH
T ss_pred ccccHHHHHHHhCCchHHHHHHhCCHHHHHHHHHH
Confidence 36899999999999999999999877776654433
No 375
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=28.74 E-value=51 Score=27.42 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=25.0
Q ss_pred ccccchhhhhhhcc-cchhhhhhhhHHHHHH
Q 016379 87 GHNLRTRAVQELFR-YSGETISRHFNNVLNA 116 (390)
Q Consensus 87 ~~~~~~~~l~~~fg-is~stv~~~~~~v~~~ 116 (390)
..+.+..+++..++ +|++|+|.+++...++
T Consensus 34 ~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~a 64 (182)
T 4g6q_A 34 GRSLTTRELAELLPDVATTTLYRQVGILVKA 64 (182)
T ss_dssp TSCEEHHHHHHHCTTBCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 45688899999996 9999999998776654
No 376
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=28.73 E-value=35 Score=28.19 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=28.4
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 37 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 70 (218)
T 3gzi_A 37 QVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIH 70 (218)
T ss_dssp CCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 5899999999999999999999877766654443
No 377
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=28.45 E-value=1.3e+02 Score=21.93 Aligned_cols=73 Identities=8% Similarity=0.092 Sum_probs=48.6
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhccCCccccCCCCCHHHHHHHHhhhcc-cccchhhhhhhcccc-hhhhhhhhHHHH
Q 016379 38 GQSERCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVG-HNLRTRAVQELFRYS-GETISRHFNNVL 114 (390)
Q Consensus 38 ~~d~~f~~~frms~~~F~~L~~~L~~~~~~~~~~~~~~~~~l~~~L~~L~-~~~~~~~l~~~fgis-~stv~~~~~~v~ 114 (390)
.+-++.-..++|++..|.++.......... ..--..++..+...|. ++.+..++|...|-+ .+..++.|++..
T Consensus 21 ~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~----~~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~ 95 (107)
T 2k9s_A 21 FDIASVAQHVCLSPSRLSHLFRQQLGISVL----SWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCT 95 (107)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHCcCHH----HHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 355677788999999888887765421110 1112344555555565 678999999999975 677788777664
No 378
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=28.36 E-value=22 Score=26.06 Aligned_cols=26 Identities=4% Similarity=0.037 Sum_probs=21.5
Q ss_pred cccccchhhhhhhcccchhh----hhhhhH
Q 016379 86 VGHNLRTRAVQELFRYSGET----ISRHFN 111 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~st----v~~~~~ 111 (390)
...|.++.++|...|+|.+| ++++-+
T Consensus 11 ~~~glsq~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 11 LRAGISQEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCcchhhhHHHHHHC
Confidence 45688999999999999999 776543
No 379
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=28.28 E-value=39 Score=27.03 Aligned_cols=35 Identities=9% Similarity=-0.058 Sum_probs=28.7
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 26 ~~~s~~~IA~~agvs~~tly~~F~sK~~L~~a~~~ 60 (180)
T 2fd5_A 26 VEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFE 60 (180)
T ss_dssp TSCCHHHHHHHTTCCGGGGGGTCSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCccHHHHHCCCHHHHHHHHHH
Confidence 36899999999999999999999876666654433
No 380
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=28.17 E-value=33 Score=30.25 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=28.9
Q ss_pred cccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
++...++...|+..++|+++||+.+++.-+.+-
T Consensus 17 v~~~gs~s~AA~~L~isq~avS~~i~~LE~~lg 49 (303)
T 3isp_A 17 VVELGSFDAAAERLHVTPSAVSQRIKSLEQQVG 49 (303)
T ss_dssp HHHHTCHHHHHTTTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHhCCChHHHHHHHHHHHHHhC
Confidence 344568999999999999999999999999886
No 381
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=27.72 E-value=35 Score=27.92 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=29.2
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 34 ~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 69 (199)
T 2rek_A 34 ADASLEEIARRAGVGSATLHRHFPSRWGLLQAVFQE 69 (199)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCchHHHHHHCCCHHHHHHHHHHH
Confidence 368999999999999999999998776666544433
No 382
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=27.70 E-value=39 Score=27.70 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=29.2
Q ss_pred ccccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
+.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 30 G~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 65 (196)
T 2qwt_A 30 GLGVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAE 65 (196)
T ss_dssp CTTSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHH
Confidence 346899999999999999999999886666654443
No 383
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=27.62 E-value=37 Score=27.89 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=29.4
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~ 68 (220)
T 3lhq_A 33 SATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWEL 68 (220)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCceeehhhcCCHHHHHHHHHHH
Confidence 358899999999999999999998877766554433
No 384
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=27.59 E-value=36 Score=27.32 Aligned_cols=36 Identities=8% Similarity=0.233 Sum_probs=29.4
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 62 (194)
T 2g7s_A 27 NSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQ 62 (194)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHH
Confidence 468999999999999999999998877766554433
No 385
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=27.42 E-value=1.2e+02 Score=22.68 Aligned_cols=74 Identities=14% Similarity=0.093 Sum_probs=50.4
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhccCCccccCCCCCHHHHHHHHhhhcc-cccchhhhhhhccc-chhhhhhhhHHHHH
Q 016379 38 GQSERCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVG-HNLRTRAVQELFRY-SGETISRHFNNVLN 115 (390)
Q Consensus 38 ~~d~~f~~~frms~~~F~~L~~~L~~~~~~~~~~~~~~~~~l~~~L~~L~-~~~~~~~l~~~fgi-s~stv~~~~~~v~~ 115 (390)
.+-++.-..++|++..|.+++... .... ...--..++-.+...|. ++.+..+||...|- +.+..++.|++...
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk~~-G~s~----~~~~~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~G 98 (120)
T 3mkl_A 24 WTLARIASELLMSPSLLKKKLREE-ETSY----SQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYG 98 (120)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHT-TCCH----HHHHHHHHHHHHHHHHTSTTCCHHHHHHHTTCSCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHc-CCCH----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHC
Confidence 356778889999999998887653 2100 01112344555666665 67899999999996 57888888887754
Q ss_pred H
Q 016379 116 A 116 (390)
Q Consensus 116 ~ 116 (390)
.
T Consensus 99 ~ 99 (120)
T 3mkl_A 99 M 99 (120)
T ss_dssp S
T ss_pred c
Confidence 3
No 386
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=27.41 E-value=42 Score=27.69 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=28.8
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 27 ~~~s~~~IA~~aGvs~~tiY~~F~sKe~L~~~v~~ 61 (202)
T 2d6y_A 27 AGARIDRIAAEARANKQLIYAYYGNKGELFASVLE 61 (202)
T ss_dssp TSCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 36899999999999999999999877666654433
No 387
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=27.33 E-value=22 Score=29.00 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=28.7
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 27 ~~~t~~~IA~~Agvs~~tly~~F~sK~~L~~a~~~ 61 (194)
T 3dpj_A 27 AQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIR 61 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCChHHHHHHcCCHHHHHHHHHH
Confidence 46899999999999999999999877666654433
No 388
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=27.27 E-value=20 Score=29.09 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=29.1
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 34 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~ 68 (191)
T 4aci_A 34 GATVRRLEEATGKSRGAIFHHFGDKENLFLALARE 68 (191)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCchHHHHHCCCHHHHHHHHHHH
Confidence 58999999999999999999998877776654433
No 389
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=27.21 E-value=39 Score=27.54 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=30.6
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhccc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 124 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~ 124 (390)
.+.+.++|+..-|||++|++++|..--..+..+...+
T Consensus 36 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~ 72 (208)
T 3cwr_A 36 AAMTMEGVASEAGIAKKTLYRFASGRADLIGLLVESW 72 (208)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 4689999999999999999999998777766554444
No 390
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=27.15 E-value=43 Score=27.57 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=29.6
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 30 ~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~~~ 65 (212)
T 2ras_A 30 AGLTLSELAARAGISQANLSRYFETREDLMEAIADY 65 (212)
T ss_dssp SCCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHH
T ss_pred ccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 468999999999999999999998876666554443
No 391
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=27.11 E-value=37 Score=28.13 Aligned_cols=34 Identities=12% Similarity=-0.003 Sum_probs=28.3
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 42 ~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 75 (214)
T 2zb9_A 42 AQLTFERVARVSGVSKTTLYKWWPSKGALALDGY 75 (214)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
Confidence 3689999999999999999999988766665433
No 392
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=27.09 E-value=32 Score=30.13 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=24.7
Q ss_pred ccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+.+..+++..+|+|++||+++++....
T Consensus 23 ~g~~s~~ELa~~lglS~stVs~hL~~Le~ 51 (232)
T 2qlz_A 23 CMECYFSLLSSKVSVSSTAVAKHLKIMER 51 (232)
T ss_dssp TTTTCSSSSCTTCCCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34688899999999999999998877655
No 393
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=26.96 E-value=39 Score=28.96 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=29.3
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 65 ~~~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~~v~~~ 100 (245)
T 3aqt_A 65 DNVGIAEITEGANIGTGTFYNYFPDREQLLQAVAED 100 (245)
T ss_dssp GGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHHHHH
T ss_pred ccCcHHHHHHHhCCChHHHHHHcCCHHHHHHHHHHH
Confidence 368999999999999999999998877666554433
No 394
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=26.91 E-value=39 Score=27.72 Aligned_cols=35 Identities=3% Similarity=-0.109 Sum_probs=28.6
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 33 ~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 67 (212)
T 3knw_A 33 VGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLK 67 (212)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHH
Confidence 46899999999999999999999877666554433
No 395
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=26.88 E-value=40 Score=29.76 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=28.6
Q ss_pred cccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 86 VGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 86 L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
++...++...|+..++|+|+||+.+++.-+.+-
T Consensus 13 v~~~gs~t~AA~~L~isq~avS~~i~~LE~~lg 45 (305)
T 3fxq_A 13 IEEVGSLRAAAQLLHLSQPALSAAIQQLEDELK 45 (305)
T ss_dssp HHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 334458999999999999999999999998885
No 396
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=26.88 E-value=43 Score=28.10 Aligned_cols=28 Identities=4% Similarity=0.231 Sum_probs=23.2
Q ss_pred ccc--chhhhhhhcccc-hhhhhhhhHHHHH
Q 016379 88 HNL--RTRAVQELFRYS-GETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~--~~~~l~~~fgis-~stv~~~~~~v~~ 115 (390)
.|. ++.++|..+|++ ++|++++.+...+
T Consensus 22 ~g~~ps~~elA~~lgiss~~tv~~~~~~l~~ 52 (202)
T 1jhf_A 22 TGMPPTRAEIAQRLGFRSPNAAEEHLKALAR 52 (202)
T ss_dssp HSSCCCHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 455 899999999999 9999998875443
No 397
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=26.87 E-value=21 Score=29.55 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=29.0
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 31 ~~~s~~~IA~~agvs~~t~Y~hF~~Ke~Ll~al~~ 65 (198)
T 3cjd_A 31 ASLRARELARQADCAVGAIYTHFQDLNALTLEVNG 65 (198)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred hhcCHHHHHHHhCCCccHHHHHhCCHHHHHHHHHH
Confidence 46899999999999999999999877766654433
No 398
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=26.86 E-value=21 Score=29.34 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=29.0
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 27 ~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~ 62 (199)
T 2o7t_A 27 DSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQY 62 (199)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 357899999999999999999998776666554433
No 399
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=26.72 E-value=41 Score=27.01 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=28.2
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 21 ~~~s~~~Ia~~agvskgtlY~~F~sKe~L~~~~~ 54 (179)
T 2eh3_A 21 QGTSVEEIVKRANLSKGAFYFHFKSKEELITEII 54 (179)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcHHHHHHcCCHHHHHHHHH
Confidence 4689999999999999999999987666655443
No 400
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.71 E-value=51 Score=27.12 Aligned_cols=37 Identities=3% Similarity=0.022 Sum_probs=30.2
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhccc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 124 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~ 124 (390)
.+.+.++|+..-|||++|++++|..--..+..+...+
T Consensus 30 ~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~av~~~~ 66 (202)
T 2i10_A 30 EGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRY 66 (202)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHhCCHHHHHHHHHHHH
Confidence 4689999999999999999999988766666554443
No 401
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=26.64 E-value=35 Score=29.53 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=29.3
Q ss_pred hcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
.++...++...|+..++|+++||+.+++.-+.+-
T Consensus 11 ~v~~~~s~t~AA~~L~isq~avS~~i~~LE~~lg 44 (291)
T 3szp_A 11 LVVENGSYTSTSKKTMIPVATITRRIQALEDSLN 44 (291)
T ss_dssp HHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 3445568999999999999999999999988885
No 402
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.60 E-value=57 Score=25.59 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=20.4
Q ss_pred ccchhhhhhhc-----ccchhhhhhhhHHHHH
Q 016379 89 NLRTRAVQELF-----RYSGETISRHFNNVLN 115 (390)
Q Consensus 89 ~~~~~~l~~~f-----gis~stv~~~~~~v~~ 115 (390)
..+..+|...+ ++|.+||+|.++.+.+
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 35666666665 8999999998877765
No 403
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=26.55 E-value=35 Score=27.47 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=29.4
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 29 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 64 (196)
T 3col_A 29 AGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYAR 64 (196)
T ss_dssp GGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHhCCHHHHHHHHHHH
Confidence 368999999999999999999998877766554433
No 404
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=26.47 E-value=23 Score=29.36 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=28.7
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 51 ~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~ 85 (218)
T 3dcf_A 51 ATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNS 85 (218)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 57899999999999999999998777766544433
No 405
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=26.39 E-value=20 Score=29.58 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=28.0
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 45 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 78 (212)
T 3nxc_A 45 RITTAKLAASVGVSEAALYRHFPSKTRMFDSLIE 78 (212)
T ss_dssp -CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHHH
T ss_pred hcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHHH
Confidence 5899999999999999999999877776655443
No 406
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=26.37 E-value=37 Score=27.46 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=28.0
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 26 ~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 59 (199)
T 3qbm_A 26 AGTAISDIMAATGLEKGGIYRHFESKEQLALAAF 59 (199)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHH
T ss_pred CcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHH
Confidence 4689999999999999999999987666655433
No 407
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=26.34 E-value=44 Score=27.68 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=29.9
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 34 ~~~s~~~IA~~agvs~~t~Y~~F~sKe~L~~~~~~~ 69 (221)
T 3c2b_A 34 KALTTSGLARAANCSKESLYKWFGDRDGLLAAMITF 69 (221)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHHHHH
Confidence 468999999999999999999999877766655443
No 408
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=26.20 E-value=41 Score=27.90 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=29.4
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~a~~~~ 65 (210)
T 2wui_A 30 GTTAMADLADAAGVSRGAVYGHYKNKIEVCLAMCDR 65 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 468999999999999999999998766666554443
No 409
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=26.07 E-value=40 Score=27.53 Aligned_cols=34 Identities=9% Similarity=0.203 Sum_probs=28.0
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 31 ~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~ 64 (189)
T 3vp5_A 31 HEAKIMHIVKALDIPRGSFYQYFEDLKDAYFYVL 64 (189)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred ccccHHHHHHHhCCChHHHHHHCCCHHHHHHHHH
Confidence 3678999999999999999999987766665433
No 410
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=26.00 E-value=14 Score=33.34 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016379 79 LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 118 (390)
Q Consensus 79 l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~ 118 (390)
+-.|+....+|.++...|+..++|+|+||+.+++.-+.+-
T Consensus 6 L~~F~~v~~~gls~s~AA~~L~isq~avS~~I~~LE~~lg 45 (324)
T 1al3_A 6 LRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELG 45 (324)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHcccCHHHHHHHhCCCchHHHHHHHHHHHHhC
Confidence 4444444455559999999999999999999999988875
No 411
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=25.95 E-value=41 Score=27.75 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=28.1
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++.+|..--..+..+.
T Consensus 29 ~~~s~~~IA~~aGvs~~t~Y~~F~sKe~L~~a~~ 62 (210)
T 3vib_A 29 ARTSLNEIAQAAGVTRDALYWHFKNKEDLFDALF 62 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHHCcCHHHHHHHCCCHHHHHHHHH
Confidence 4689999999999999999999987666555433
No 412
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=25.94 E-value=40 Score=27.65 Aligned_cols=34 Identities=6% Similarity=0.056 Sum_probs=27.9
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
++.+.++|+..-|||++|++++|..--..+..+.
T Consensus 33 ~~~s~~~Ia~~agvs~~t~Y~yF~sKe~L~~~~~ 66 (203)
T 3ccy_A 33 SETSIGDIARACECSKSRLYHYFDSKEAVLRDML 66 (203)
T ss_dssp TTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcCeeeeeeCCHHHHHHHHH
Confidence 4689999999999999999999987666555443
No 413
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=25.93 E-value=38 Score=27.55 Aligned_cols=34 Identities=12% Similarity=0.009 Sum_probs=28.0
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 30 ~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 63 (203)
T 3b81_A 30 ENTTLAFIINKLGISKGALYHYFSSKEECADAAI 63 (203)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHH
T ss_pred ccCcHHHHHHHhCCCchhHHHHcCCHHHHHHHHH
Confidence 4689999999999999999999987666655443
No 414
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=25.93 E-value=48 Score=27.44 Aligned_cols=37 Identities=19% Similarity=0.080 Sum_probs=30.8
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhccc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 124 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~ 124 (390)
.+.+.++|+..-|||++|++++|..--..+..+...+
T Consensus 47 ~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~~~ 83 (215)
T 2qko_A 47 RGLTFRAVDVEANVPKGTASNYFPSRDDLFDQVGKRI 83 (215)
T ss_dssp TTCCHHHHHHHSSSTTTCHHHHCSCHHHHHHHHHHHG
T ss_pred hhccHHHHHHHcCCCcchHHHhCCCHHHHHHHHHHHH
Confidence 3589999999999999999999998777776655444
No 415
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=25.89 E-value=20 Score=29.36 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=29.0
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 28 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~a~~~~ 62 (195)
T 3frq_A 28 EFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMMER 62 (195)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 58999999999999999999998877766554433
No 416
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=25.87 E-value=44 Score=27.38 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=28.7
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 37 ~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 71 (212)
T 1pb6_A 37 HGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLR 71 (212)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHH
T ss_pred chhhHHHHHHHHCCChhHHHHhCCCHHHHHHHHHH
Confidence 46889999999999999999999887666654433
No 417
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=25.76 E-value=41 Score=27.33 Aligned_cols=35 Identities=11% Similarity=0.006 Sum_probs=28.6
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 36 ~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 70 (206)
T 3kz9_A 36 GRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLN 70 (206)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHH
T ss_pred ccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 35889999999999999999999887666654433
No 418
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=25.69 E-value=25 Score=29.31 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.5
Q ss_pred ccccchhhhhhhcccchhhhhhhhH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFN 111 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~ 111 (390)
..|.++.++|...|+|++|++++.+
T Consensus 22 ~~gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 22 SRGLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp HTTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4689999999999999999999865
No 419
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=25.66 E-value=25 Score=27.52 Aligned_cols=26 Identities=4% Similarity=-0.102 Sum_probs=22.5
Q ss_pred hcccccchhhhhhhcccchhhhhhhh
Q 016379 85 IVGHNLRTRAVQELFRYSGETISRHF 110 (390)
Q Consensus 85 ~L~~~~~~~~l~~~fgis~stv~~~~ 110 (390)
+...|.++.++|+..|+|+++++++=
T Consensus 12 R~~~gltq~elA~~~gis~~~is~iE 37 (130)
T 3fym_A 12 RERLGMTLTELEQRTGIKREMLVHIE 37 (130)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34579999999999999999999864
No 420
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=25.34 E-value=42 Score=27.21 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=27.6
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 24 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 56 (185)
T 2yve_A 24 TLSYDSLAEATGLSKSGLIYHFPSRHALLLGMH 56 (185)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred hccHHHHHHHhCCChHHHHHhCcCHHHHHHHHH
Confidence 588999999999999999999987666655433
No 421
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=25.23 E-value=27 Score=28.39 Aligned_cols=30 Identities=10% Similarity=0.211 Sum_probs=26.1
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAI 117 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l 117 (390)
.+.+.++|+..-|||++|++++|..--..+
T Consensus 22 ~~~s~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 22 EATSVQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 468899999999999999999998766655
No 422
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=25.18 E-value=51 Score=27.06 Aligned_cols=35 Identities=9% Similarity=-0.042 Sum_probs=29.0
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 29 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 63 (216)
T 3s5r_A 29 AATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIE 63 (216)
T ss_dssp TTCCHHHHHHTTTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHH
Confidence 45899999999999999999999887776655443
No 423
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=25.14 E-value=44 Score=27.50 Aligned_cols=35 Identities=6% Similarity=-0.025 Sum_probs=28.8
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 30 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 64 (216)
T 3f0c_A 30 CKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIK 64 (216)
T ss_dssp SSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred CcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 36899999999999999999999887666654443
No 424
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=25.12 E-value=21 Score=28.86 Aligned_cols=35 Identities=9% Similarity=0.010 Sum_probs=28.7
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 62 (195)
T 3pas_A 28 ATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYY 62 (195)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred hcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHH
Confidence 57899999999999999999998876666554433
No 425
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=25.10 E-value=29 Score=29.18 Aligned_cols=36 Identities=14% Similarity=0.003 Sum_probs=30.2
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhccc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 124 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~ 124 (390)
+.+.++|+..-|||++|++++|..--..+..+....
T Consensus 59 ~~tv~~IA~~AGvs~~tlY~~F~sKe~Ll~av~~~~ 94 (214)
T 2guh_A 59 EITLKDIAEDAGVSAPLIIKYFGSKEQLFDALVDFR 94 (214)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHTCCH
T ss_pred hcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 578999999999999999999988777776655444
No 426
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.06 E-value=24 Score=29.26 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=27.0
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~ 120 (390)
.+.+.++|+..-|||++|++++|..--..+..+
T Consensus 28 ~~~s~~~IA~~AGvs~gtlY~~F~sKe~L~~a~ 60 (203)
T 2np5_A 28 EGASVREVAKRAGVSIGAVQHHFSTKDEMFAFA 60 (203)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred hhccHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 458999999999999999999998755555443
No 427
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=25.01 E-value=50 Score=27.00 Aligned_cols=35 Identities=9% Similarity=0.019 Sum_probs=28.9
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 35 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 69 (213)
T 2qtq_A 35 VDISLSELSLRSGLNSALVKYYFGNKAGLLKALLD 69 (213)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHH
T ss_pred ccccHHHHHHHhCCChhhHhHhcCCHHHHHHHHHH
Confidence 36899999999999999999999887666654433
No 428
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=24.72 E-value=19 Score=28.60 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=27.2
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~ 66 (156)
T 3ljl_A 34 KMSYTTLSQQTGVSRTGISHHFPKKTDFTAALD 66 (156)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHT
T ss_pred hcCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
Confidence 478999999999999999999987666555443
No 429
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=24.69 E-value=54 Score=30.06 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=23.8
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
..+..++++.|++|++||.|.++...+
T Consensus 19 ~~s~~eLa~~l~vS~~ti~r~l~~L~~ 45 (321)
T 1bia_A 19 FHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 368899999999999999999987665
No 430
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=24.62 E-value=54 Score=25.31 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=18.5
Q ss_pred CCCccccccc------cceEEEEEeCCCCCCC
Q 016379 144 PYFKDCVGAV------DGIHIPVMVGVDEQGP 169 (390)
Q Consensus 144 ~~fp~~iG~I------Dgt~i~i~~P~~~~~~ 169 (390)
++||++=.+| ||.|+.|+.|......
T Consensus 5 pgfPgAPs~ikIsK~~dgahLsWePP~~~sG~ 36 (123)
T 1wft_A 5 SSGPGAPSTVRISKNVDGIHLSWEPPTSPSGN 36 (123)
T ss_dssp SSCCCCCEEEEEEECSSEEEEEEECCSSCCSS
T ss_pred CCCCCCCcceEEeeCCCceEEeecCCCCCCcc
Confidence 4666654444 9999999999876433
No 431
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=24.60 E-value=44 Score=27.60 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=28.7
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 22 ~~~s~~~IA~~Agvs~~t~Y~~F~sK~~L~~a~~~ 56 (212)
T 3rh2_A 22 RTITTNHIAAHLDISPGNLYYHFRNKEDIIRCIFD 56 (212)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHH
Confidence 45899999999999999999999877666654433
No 432
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=24.49 E-value=47 Score=27.30 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=28.0
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 33 ~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~~ 66 (204)
T 2ibd_A 33 RATTVRDIADAAGILSGSLYHHFDSKESMVDEIL 66 (204)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHH
T ss_pred hhcCHHHHHHHhCCCchhHHHhcCCHHHHHHHHH
Confidence 4689999999999999999999987666555443
No 433
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=24.46 E-value=41 Score=27.68 Aligned_cols=35 Identities=6% Similarity=0.085 Sum_probs=28.4
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 32 ~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 66 (217)
T 3nrg_A 32 DSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQ 66 (217)
T ss_dssp GGCCHHHHHHHHTCCTTGGGGTCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHcCCHHHHHHHHHH
Confidence 35899999999999999999999876666554433
No 434
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=24.46 E-value=44 Score=27.70 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=28.6
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 49 ~~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~~~~ 83 (222)
T 3bru_A 49 SSVGVDEILKAARVPKGSFYHYFRNKADFGLALIE 83 (222)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred CcCcHHHHHHHhCCCcchhhhhCCCHHHHHHHHHH
Confidence 36899999999999999999999887666654433
No 435
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=24.44 E-value=47 Score=23.87 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=20.3
Q ss_pred cccchhhhhhhcccchhhhhhhhHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
++......|...|||++|+++.+++
T Consensus 53 ~~GN~s~AA~~LGISR~TLyrKLkk 77 (81)
T 1umq_A 53 CDRNVSETARRLNMHRRTLQRILAK 77 (81)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHT
T ss_pred hCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4455678999999999999987764
No 436
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=24.43 E-value=50 Score=27.28 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=27.9
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 31 ~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~~~~ 64 (211)
T 3bhq_A 31 DGTSMEEIATKAGASKQTVYKHFTDKETLFGEVV 64 (211)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 4689999999999999999999987666555433
No 437
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=24.37 E-value=20 Score=29.55 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=28.7
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 34 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 68 (215)
T 3e7q_A 34 GASVRKICAEAGVSVGLINHHYDGKDALVAEAYLA 68 (215)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 57899999999999999999998777766544433
No 438
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=24.36 E-value=16 Score=29.73 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=23.2
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 32 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 65 (199)
T 3on2_A 32 GLSLRQLAREAGVSHAAPSKHFRDRQALLDALAE 65 (199)
T ss_dssp GCCHHHHHHHTC-----CCCSSSSHHHHHHHHHH
T ss_pred hhhHHHHHHHhCCChHHHHHHhCCHHHHHHHHHH
Confidence 5799999999999999999999887666655443
No 439
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=24.26 E-value=25 Score=29.88 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=28.4
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 33 ~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~ 66 (231)
T 2qib_A 33 EVSIDEIASAAGISRPLVYHYFPGKLSLYEAALQ 66 (231)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred hcCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHH
Confidence 5789999999999999999999887776654433
No 440
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=24.17 E-value=27 Score=29.24 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=27.8
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 43 ~~~s~~~IA~~aGvskgtlY~yF~sKe~L~~a~~ 76 (214)
T 2oer_A 43 QRFTTARVAERAGVSIGSLYQYFPNKAAILFRLQ 76 (214)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred ccccHHHHHHHhCCCCchHHHhCCCHHHHHHHHH
Confidence 3589999999999999999999987665554443
No 441
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=24.11 E-value=23 Score=29.00 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=27.6
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 40 ~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~ 72 (203)
T 3mnl_A 40 AVQMRAVADRADVAVGTLYRYFPSKVHLLVSAL 72 (203)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHcCCChhHHHHHcCCHHHHHHHHH
Confidence 488999999999999999999988666655443
No 442
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=24.07 E-value=38 Score=27.65 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=28.7
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 35 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~ 69 (211)
T 3him_A 35 GATTTREIAASLDMSPGAVYPHYKTKESLLYAISL 69 (211)
T ss_dssp TTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHH
T ss_pred CcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHH
Confidence 35899999999999999999999877766654433
No 443
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.00 E-value=27 Score=29.14 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=27.7
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
++.+.++|+..-|||++|++.+|..--..+..+.
T Consensus 28 ~~~s~~~IA~~aGvs~gtlY~yF~sKe~L~~a~~ 61 (209)
T 2gfn_A 28 SAVTTRAVAEESGWSTGVLNHYFGSRHELLLAAL 61 (209)
T ss_dssp GGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCCcchHHhcCCCHHHHHHHHH
Confidence 4689999999999999999999987655554433
No 444
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=23.93 E-value=21 Score=28.99 Aligned_cols=34 Identities=6% Similarity=0.031 Sum_probs=28.2
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 23 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 56 (189)
T 3geu_A 23 GTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVK 56 (189)
T ss_dssp HCCHHHHHHHTTCCHHHHTTTCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHhCCHHHHHHHHHH
Confidence 5789999999999999999999877766654433
No 445
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=23.85 E-value=19 Score=29.54 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=27.6
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 31 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 63 (204)
T 3eup_A 31 GTSLTDLTEATNLTKGSIYGNFENKEAVAIAAF 63 (204)
T ss_dssp HCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcHHHHHhCCCHHHHHHHHH
Confidence 578999999999999999999987766665443
No 446
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=23.84 E-value=23 Score=29.31 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=27.4
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~ 120 (390)
++.+.++|+..-|||++|++++|..--+.+..+
T Consensus 39 ~~~tv~~Ia~~Agvs~~t~Y~~F~~K~~L~~~~ 71 (185)
T 3o60_A 39 ESISIKDLCEQARVSRATFYRHHKEIIQVIEVQ 71 (185)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 358899999999999999999998776665543
No 447
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=23.78 E-value=49 Score=27.31 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=29.3
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~~~~~~ 65 (210)
T 2xdn_A 30 ARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDS 65 (210)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHCCChHHHHHHhCCHHHHHHHHHHH
Confidence 468999999999999999999998766666554433
No 448
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.74 E-value=49 Score=26.47 Aligned_cols=33 Identities=9% Similarity=0.039 Sum_probs=27.0
Q ss_pred cccchhhhhhhcccchhhhhhhhHH-HHHHHHHh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNN-VLNAIMAI 120 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~-v~~~l~~~ 120 (390)
.+.+.++|+..-|||++|++++|.. --..+..+
T Consensus 25 ~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~ 58 (191)
T 1sgm_A 25 HATGLNQIVKESGAPKGSLYHFFPNGKEELAIEA 58 (191)
T ss_dssp TTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHH
T ss_pred cccCHHHHHHHHCCCchhHHHHccccHHHHHHHH
Confidence 3689999999999999999999985 65555443
No 449
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=23.69 E-value=92 Score=22.81 Aligned_cols=38 Identities=5% Similarity=-0.059 Sum_probs=29.4
Q ss_pred HHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHH
Q 016379 78 QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 115 (390)
Q Consensus 78 ~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~ 115 (390)
-+.-.|..+..|.....++...|+|.+++.++++...+
T Consensus 9 Ii~~IL~~i~~~~~~t~La~~~~ls~~~~~~~l~~L~~ 46 (95)
T 1r7j_A 9 IIQAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMD 46 (95)
T ss_dssp HHHHHHHHHTTCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 34445556666688999999999999999998876644
No 450
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=23.67 E-value=1.2e+02 Score=22.53 Aligned_cols=74 Identities=11% Similarity=0.087 Sum_probs=48.5
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhccCCccccCCCCCHHHHHHHHhhhccc-ccchhhhhhhccc-chhhhhhhhHHHHH
Q 016379 38 GQSERCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVGH-NLRTRAVQELFRY-SGETISRHFNNVLN 115 (390)
Q Consensus 38 ~~d~~f~~~frms~~~F~~L~~~L~~~~~~~~~~~~~~~~~l~~~L~~L~~-~~~~~~l~~~fgi-s~stv~~~~~~v~~ 115 (390)
.+-++.-..++|++..|.+++......... ..--..++..+...|.. +.+..+||...|- +.+..++.|++...
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~----~~~~~~Rl~~A~~lL~~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~~G 99 (113)
T 3oio_A 24 LSTDDIAYYVGVSRRQLERLFKQYLGTVPS----KYYLELRLNRARQLLQQTSKSIVQIGLACGFSSGPHFSSTYRNHFN 99 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHTSSCHH----HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHCcCHH----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHC
Confidence 355777788888888888887776432110 11112344455555554 7899999999997 56777888877653
No 451
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.62 E-value=47 Score=27.49 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=28.6
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 27 ~~~s~~~IA~~AGvs~gt~Y~yF~sKe~L~~~v~~ 61 (206)
T 1vi0_A 27 HQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFK 61 (206)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHH
Confidence 36899999999999999999999876666654433
No 452
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=23.50 E-value=50 Score=26.96 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=26.7
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMA 119 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 119 (390)
++.+.++|+..-|||++|++.+|..--..+..
T Consensus 29 ~~~s~~~IA~~aGvs~gtlY~yF~sKe~L~~a 60 (194)
T 2nx4_A 29 EAANMRDIATEAGYTNGALSHYFAGKDEILRT 60 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcchHHHhCcCHHHHHHH
Confidence 46899999999999999999999875555443
No 453
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=23.47 E-value=47 Score=27.53 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=28.7
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 42 ~~s~~~IA~~AGVsk~tlY~~F~sKe~L~~a~~~~ 76 (207)
T 3bjb_A 42 RVQMHEVAKRAGVAIGTLYRYFPSKTHLFVAVMVD 76 (207)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHH
Confidence 57899999999999999999998776666554433
No 454
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=23.36 E-value=17 Score=33.83 Aligned_cols=39 Identities=8% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHH
Q 016379 77 EQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNA 116 (390)
Q Consensus 77 ~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~ 116 (390)
.+++..|++. .+.+..+++..+|+|++||+|.+.+..+.
T Consensus 23 ~~iL~~l~~~-~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~ 61 (345)
T 2o0m_A 23 FQILRNIYWM-QPIGRRSLSETMGITERVLRTETDVLKQL 61 (345)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3455555443 57999999999999999999999877653
No 455
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=23.32 E-value=49 Score=27.91 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=29.4
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 62 ~~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~~~~ 97 (229)
T 3bni_A 62 DALSTRAVALRADVPIGSVYRFFGNKRQMADALAQR 97 (229)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred hhccHHHHHHHHCCCchhHHHHcCCHHHHHHHHHHH
Confidence 358999999999999999999998877766554433
No 456
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=23.29 E-value=46 Score=26.84 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=28.9
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 30 ~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 64 (196)
T 3he0_A 30 QGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRL 64 (196)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHHHH
Confidence 45899999999999999999999877776654433
No 457
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=23.27 E-value=12 Score=29.05 Aligned_cols=25 Identities=4% Similarity=0.110 Sum_probs=22.5
Q ss_pred cccchhhhhhhcccchhhhhhhhHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
.|.++.++|...|+|++|++++-+-
T Consensus 4 ~glTQ~eLA~~~Gvs~~~is~~E~G 28 (122)
T 1nr3_A 4 RGWSQKKIARELKTTRQNVSAIERK 28 (122)
T ss_dssp CSCSSCSTHHHHHHCCSSSCCHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5789999999999999999998765
No 458
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=23.23 E-value=25 Score=29.74 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=27.6
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 50 ~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~ 82 (226)
T 2pz9_A 50 GARVDRIAKQARTSKERVYAYFRSKEALYAHVA 82 (226)
T ss_dssp HCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHH
T ss_pred cCcHHHHHHHHCCChHHHHHHcCCHHHHHHHHH
Confidence 589999999999999999999987666665443
No 459
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=23.15 E-value=51 Score=26.74 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=28.1
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
..+.++|+..-|||++|++++|..--..+..+..
T Consensus 34 ~~s~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 67 (194)
T 2q24_A 34 DAHLERIAREAGVGSGTLYRNFPTREALIEAAYR 67 (194)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHCCSHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCChHHHHHHcCCHHHHHHHHHH
Confidence 3899999999999999999999887666654433
No 460
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.04 E-value=24 Score=29.46 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=28.0
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 22 ~~~s~~~IA~~AGvskgtlY~hF~sKe~L~~a~~ 55 (208)
T 2g3b_A 22 RGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAAL 55 (208)
T ss_dssp HHCCHHHHHHHHTSCHHHHHHHHCSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 3589999999999999999999987666655433
No 461
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=23.03 E-value=54 Score=26.81 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=27.9
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 26 ~~ts~~~IA~~aGvs~gtlY~~F~sKe~L~~av~ 59 (197)
T 2gen_A 26 DATTIEMIRDRSGASIGSLYHHFGNKERIHGELY 59 (197)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCChHHHHHHCCCHHHHHHHHH
Confidence 4689999999999999999999987666555433
No 462
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=22.92 E-value=46 Score=27.39 Aligned_cols=34 Identities=15% Similarity=0.050 Sum_probs=27.9
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
++.+.++|+..-|||++|++++|..--..+..+.
T Consensus 31 ~~ts~~~IA~~agvs~gtlY~yF~sKe~L~~~v~ 64 (205)
T 1rkt_A 31 ELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRII 64 (205)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCCcchhhhhCCCHHHHHHHHH
Confidence 4689999999999999999999987666555443
No 463
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.84 E-value=53 Score=27.57 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=28.6
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 59 ~~~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~~v~ 92 (225)
T 2id3_A 59 DALDLGEIARRAGVGKTTVYRRWGTPGGLAADLL 92 (225)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
Confidence 3589999999999999999999988776665443
No 464
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=22.84 E-value=58 Score=26.58 Aligned_cols=35 Identities=9% Similarity=0.126 Sum_probs=28.5
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 31 ~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~av~~ 65 (197)
T 2hyt_A 31 ADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVE 65 (197)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 46899999999999999999999876665554433
No 465
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=22.80 E-value=48 Score=27.26 Aligned_cols=33 Identities=9% Similarity=0.199 Sum_probs=27.3
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~ 120 (390)
.+.+.++|+..-|||++|++++|..--..+..+
T Consensus 33 ~~~s~~~IA~~agvsk~tlY~yF~sKe~L~~a~ 65 (199)
T 3crj_A 33 ADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAF 65 (199)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChhHHhhhcCCHHHHHHHH
Confidence 468999999999999999999997765555443
No 466
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=22.59 E-value=46 Score=26.83 Aligned_cols=33 Identities=6% Similarity=-0.052 Sum_probs=27.6
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 30 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~ 62 (197)
T 3rd3_A 30 GVGLNEILQSAGVPKGSFYHYFKSKEQFGQALL 62 (197)
T ss_dssp TCCHHHHHHHHTCCHHHHTTTCSCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhhHHHHcCCHHHHHHHHH
Confidence 578999999999999999999987766655433
No 467
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=22.52 E-value=43 Score=28.04 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHhhhcccc----cchhhhhhhcc---cchhhhhhhhHHHHHHH
Q 016379 72 RIKIEEQLAIFMFIVGHN----LRTRAVQELFR---YSGETISRHFNNVLNAI 117 (390)
Q Consensus 72 ~~~~~~~l~~~L~~L~~~----~~~~~l~~~fg---is~stv~~~~~~v~~~l 117 (390)
.++..+.- .|.+|+.| .+..+++...+ +|..||..++.++..-|
T Consensus 145 ~Lt~rE~~--vl~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl 195 (220)
T 1p2f_A 145 HLPKKEFE--ILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAI 195 (220)
T ss_dssp CCCHHHHH--HHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHH
T ss_pred ecCHHHHH--HHHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 36665543 34556666 99999999998 99999999998887766
No 468
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=22.38 E-value=72 Score=21.15 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=18.6
Q ss_pred chhhhhhhcccchhhhhhhhHH
Q 016379 91 RTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 91 ~~~~l~~~fgis~stv~~~~~~ 112 (390)
.....|...|||++|+++.+++
T Consensus 35 n~~~aA~~LGIsr~tL~rklkk 56 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLKQ 56 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHH
Confidence 5668899999999999987764
No 469
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=22.30 E-value=26 Score=28.96 Aligned_cols=34 Identities=15% Similarity=0.022 Sum_probs=28.2
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 24 ~~~s~~~IA~~AgvskgtlY~yF~sKe~L~~~~~ 57 (202)
T 2id6_A 24 DRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAY 57 (202)
T ss_dssp HHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 3589999999999999999999987666665443
No 470
>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19}
Probab=22.17 E-value=41 Score=28.37 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=25.3
Q ss_pred cccccceEEEEEeCCCCCCCCCCCCCCceeeeeeeecC
Q 016379 150 VGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSF 187 (390)
Q Consensus 150 iG~IDgt~i~i~~P~~~~~~y~~~k~~~s~~~q~v~d~ 187 (390)
.||+|....|+. .||+.++..+.++|++
T Consensus 38 aGAlDV~~tPi~----------MKKnRPg~~L~VLc~~ 65 (186)
T 3c19_A 38 EEVLACHAVPCV----------TKKNRPGHVLVVLVDG 65 (186)
T ss_dssp TTEEEEEEEEEE----------ETTTEEEEEEEEEEEC
T ss_pred CCCeEEEeeece----------EeCCCceEEEEEEECC
Confidence 589999999995 6899999999999997
No 471
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.16 E-value=60 Score=27.30 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=30.2
Q ss_pred ccccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
+ +.+.+.|+...|||++|++++|..--..+..+...
T Consensus 28 G-~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~~~~~ 63 (213)
T 2g7g_A 28 G-DFRMPDLARHLNVQVSSIYHHAKGRAAVVELVRHR 63 (213)
T ss_dssp S-SCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHhCCCHhHHHHHcCCHHHHHHHHHHH
Confidence 5 89999999999999999999998877766554443
No 472
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=22.05 E-value=35 Score=28.76 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=29.4
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhccc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 124 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~ 124 (390)
+.+.+.|+...|||++|++++|..--..+..+....
T Consensus 22 ~~s~~~IA~~aGvs~~tlY~hf~~K~~Ll~~~~~~~ 57 (209)
T 3bqy_A 22 TLTMRRLAQAMDVQAGALYRYFAAKQDLLTAMAEHM 57 (209)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchHHhhcCCHHHHHHHHHHHH
Confidence 589999999999999999999988766665544443
No 473
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=21.96 E-value=60 Score=27.09 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=28.9
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 48 ~~t~~~IA~~aGvs~~tlY~~F~sK~~Ll~a~~~~ 82 (217)
T 3hta_A 48 GLSHRTVAAEADVPLGSTTYHFATLDDLMVAALRQ 82 (217)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHcCCCcchhhhcCCCHHHHHHHHHHH
Confidence 68999999999999999999998776666554433
No 474
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=21.93 E-value=48 Score=27.79 Aligned_cols=44 Identities=7% Similarity=0.078 Sum_probs=33.7
Q ss_pred CCHHHHHHHHhhhcccc----cchhhhhhhcc-----cchhhhhhhhHHHHHHHH
Q 016379 73 IKIEEQLAIFMFIVGHN----LRTRAVQELFR-----YSGETISRHFNNVLNAIM 118 (390)
Q Consensus 73 ~~~~~~l~~~L~~L~~~----~~~~~l~~~fg-----is~stv~~~~~~v~~~l~ 118 (390)
++..+.- .|.+|+.| .+..+++...+ +|..||..++.++..-|.
T Consensus 144 Lt~rE~~--vL~~l~~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~ 196 (223)
T 2hqr_A 144 VKGKPFE--VLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMD 196 (223)
T ss_dssp CCSTTTH--HHHHHHHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHH
T ss_pred cCHHHHH--HHHHHHhCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHh
Confidence 4543332 34556666 89999999998 999999999999888775
No 475
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=21.89 E-value=70 Score=30.08 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=26.0
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNA 116 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~ 116 (390)
...|-.+++...|+|++||++++++..+.
T Consensus 29 ~~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 29 GPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp CSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 45789999999999999999999988874
No 476
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=21.79 E-value=54 Score=26.94 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=28.1
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 28 ~~~s~~~IA~~aGvsk~tlY~~F~sKe~L~~a~~ 61 (203)
T 3cdl_A 28 EITSMDRIAARAEVSKRTVYNHFPSKEELFAEML 61 (203)
T ss_dssp TTCCHHHHHHHTTSCHHHHHTTSSSHHHHHHHHH
T ss_pred hhcCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 4689999999999999999999987666555443
No 477
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=21.69 E-value=47 Score=27.25 Aligned_cols=33 Identities=6% Similarity=0.033 Sum_probs=27.0
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~ 120 (390)
.+.+.++|+..-|||++|++++|..--..+..+
T Consensus 28 ~~~t~~~Ia~~Agvs~gt~Y~yF~sKe~L~~~~ 60 (204)
T 3anp_C 28 QETTATEIAKAAHVSRGTFFNYYPYKEAVLLDY 60 (204)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSTHHHHHHH
T ss_pred ccccHHHHHHHcCCchHHHHHHcCCHHHHHHHH
Confidence 358999999999999999999997755555443
No 478
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.66 E-value=71 Score=25.56 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=21.1
Q ss_pred cccchhhhhhhc-----ccchhhhhhhhHHHHH
Q 016379 88 HNLRTRAVQELF-----RYSGETISRHFNNVLN 115 (390)
Q Consensus 88 ~~~~~~~l~~~f-----gis~stv~~~~~~v~~ 115 (390)
...+..+|.... ++|.+||+|.++.+.+
T Consensus 41 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 73 (150)
T 2xig_A 41 THLSPEEITHSIRQKDKNTSISSVYRILNFLEK 73 (150)
T ss_dssp SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 346667776666 7999999998876655
No 479
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=21.55 E-value=33 Score=28.59 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=23.0
Q ss_pred ccccchhhhhhhcccchhhhhhhhHH
Q 016379 87 GHNLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 87 ~~~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
..|.++.++|...|+|++|++++-+-
T Consensus 21 ~~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 21 QVKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46899999999999999999998763
No 480
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=21.49 E-value=49 Score=27.88 Aligned_cols=36 Identities=8% Similarity=0.005 Sum_probs=29.5
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 49 ~~~t~~~IA~~Agvs~~t~Y~~F~sKe~Ll~~~~~~ 84 (230)
T 2iai_A 49 DGTSMEHLSKAAGISKSSIYHHVTGKEELLRRAVSR 84 (230)
T ss_dssp TTCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHH
T ss_pred cccCHHHHHHHHCCChhHHHHhCCCHHHHHHHHHHH
Confidence 468999999999999999999998777766554433
No 481
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=21.47 E-value=52 Score=27.35 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=27.8
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~av~ 63 (219)
T 2w53_A 30 ARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIV 63 (219)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchHHhhcCCCHHHHHHHHH
Confidence 4689999999999999999999987665554433
No 482
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.03 E-value=67 Score=25.71 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=20.4
Q ss_pred ccchhhhhhhc-----ccchhhhhhhhHHHHH
Q 016379 89 NLRTRAVQELF-----RYSGETISRHFNNVLN 115 (390)
Q Consensus 89 ~~~~~~l~~~f-----gis~stv~~~~~~v~~ 115 (390)
..+..+|.... ++|.+||+|.++.+.+
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 64 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDD 64 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 45666666665 8999999998877655
No 483
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=20.92 E-value=57 Score=26.71 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=29.2
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 45 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 80 (217)
T 3mvp_A 45 FNVTTNEIAKKADVSVGTLYAYFASKEDILTALLKR 80 (217)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cccCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHH
Confidence 368999999999999999999998876666544433
No 484
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=20.91 E-value=59 Score=27.14 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=28.8
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 54 ~~~t~~~IA~~AGvs~~tlY~~F~sKe~L~~~~~~ 88 (221)
T 3g7r_A 54 HSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLD 88 (221)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHH
Confidence 35899999999999999999999877666654443
No 485
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.83 E-value=57 Score=27.40 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=28.2
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 35 ~~~s~~~IA~~agvs~~t~Y~~F~~K~~L~~a~~ 68 (216)
T 2oi8_A 35 SALSLNAIAKRMGMSGPALYRYFDGRDELITELI 68 (216)
T ss_dssp TSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 4689999999999999999999987766665443
No 486
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=20.79 E-value=39 Score=29.20 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=29.4
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhcc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 123 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 123 (390)
.+.+.+.|+...|||++|++++|..--..+..+...
T Consensus 25 ~~~S~r~IA~~aGvs~~tlY~hF~~K~~Ll~~~~~~ 60 (234)
T 2opt_A 25 DALSMRRLAQELKTGHASLYAHVGNRDELLDLVFDI 60 (234)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHH
T ss_pred cccCHHHHHHHHCCChhHHHHHcCCHHHHHHHHHHH
Confidence 358999999999999999999998877766554433
No 487
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=20.78 E-value=1e+02 Score=21.98 Aligned_cols=39 Identities=5% Similarity=0.154 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHH
Q 016379 75 IEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNV 113 (390)
Q Consensus 75 ~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v 113 (390)
.+++|+=+|.-.+...+..+|+...|+.+..|++.+++.
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~L 58 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRM 58 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 478899999999999999999999999999888766554
No 488
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=20.76 E-value=34 Score=27.86 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=21.5
Q ss_pred ccchhhhhhhcccchhhhhhhhHH
Q 016379 89 NLRTRAVQELFRYSGETISRHFNN 112 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~ 112 (390)
+.+.++|+..-|||++|++++|..
T Consensus 27 ~~t~~~Ia~~agvs~~t~Y~~F~s 50 (195)
T 2dg7_A 27 NVTVTDIAERAGLTRRSYFRYFPD 50 (195)
T ss_dssp GCCHHHHHHHTTCCHHHHHHHCSS
T ss_pred ccCHHHHHHHhCCCHHHHHHHcCC
Confidence 589999999999999999997754
No 489
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.40 E-value=55 Score=26.90 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=27.1
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHh
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~ 120 (390)
.+.+.++|+..-|||++|++++|..--..+..+
T Consensus 31 ~~~s~~~IA~~aGvsk~tlY~hF~sKe~L~~a~ 63 (200)
T 2hyj_A 31 DGITIGRLAEELEMSKSGVHKHFGTKETLQIST 63 (200)
T ss_dssp GGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHcCCHHHHHHHH
Confidence 468999999999999999999997755555443
No 490
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=20.18 E-value=31 Score=29.29 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=27.3
Q ss_pred ccchhhhhhhcccchhhhhhhhHHHHHHHHHhh
Q 016379 89 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 121 (390)
Q Consensus 89 ~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 121 (390)
+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 26 ~~s~~~IA~~aGvs~~tlY~~F~sK~~Ll~av~ 58 (220)
T 1z0x_A 26 QLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMA 58 (220)
T ss_dssp GCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHH
T ss_pred cCCHHHHHHHcCCCHHHHHHhcCCHHHHHHHHH
Confidence 589999999999999999999988666554433
No 491
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=20.14 E-value=66 Score=30.62 Aligned_cols=29 Identities=7% Similarity=0.124 Sum_probs=26.0
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHH
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNA 116 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~ 116 (390)
...|-.+++...|+|++||++++++..+.
T Consensus 52 ~~~sr~ela~~~gls~~tv~~~v~~L~~~ 80 (429)
T 1z05_A 52 GPISRIDLSKESELAPASITKITRELIDA 80 (429)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 45789999999999999999999988873
No 492
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=20.01 E-value=63 Score=27.44 Aligned_cols=35 Identities=9% Similarity=0.161 Sum_probs=28.7
Q ss_pred cccchhhhhhhcccchhhhhhhhHHHHHHHHHhhc
Q 016379 88 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122 (390)
Q Consensus 88 ~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 122 (390)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 42 ~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~av~~ 76 (231)
T 2zcx_A 42 REITLTDIAATVGMHKSALLRYFETREQIFLKITA 76 (231)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHHHH
Confidence 36899999999999999999999877666654433
Done!