BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016381
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z72|A Chain A, New Structure Of Cold-Active Protein Tyrosine Phosphatase
At 1.1 Angstrom
Length = 342
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 58 RRIVAVGDLHGDLDQARCALEMAGVLSSDGLDLWTGGESVLIQLGDVLDRGEDELAILSL 117
+++VA+ D+HG D L+ ++ SDG W GE ++ GD+ DRG +L
Sbjct: 71 KKVVALSDVHGQYDVLLTLLKKQKIIDSDGN--WAFGEGHMVMTGDIFDRGHQVNEVLWF 128
Query: 118 LRSLDMQAKAEGGAVFQVNGNHETMNVEGDFRYV 151
+ LD QA+ GG V + GNHE M + GD RYV
Sbjct: 129 MYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYV 162
>pdb|1V73|A Chain A, Crystal Structure Of Cold-Active Protein-Tyrosine
Phosphatase Of A Psychrophile Shewanella Sp
Length = 342
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 58 RRIVAVGDLHGDLDQARCALEMAGVLSSDGLDLWTGGESVLIQLGDVLDRGEDELAILSL 117
+++VA+ D+HG D L+ ++ SDG W GE ++ GD+ DRG +L
Sbjct: 71 KKVVALSDVHGQYDVLLTLLKKQKIIDSDGN--WAFGEGHMVMTGDIFDRGHQVNEVLWF 128
Query: 118 LRSLDMQAKAEGGAVFQVNGNHETMNVEGDFRYV 151
+ LD QA+ GG V + GNHE M + GD RYV
Sbjct: 129 MYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYV 162
>pdb|2ZBM|A Chain A, Crystal Structure Of I115m Mutant Cold-Active Protein
Tyrosine Phosphatase
Length = 336
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 58 RRIVAVGDLHGDLDQARCALEMAGVLSSDGLDLWTGGESVLIQLGDVLDRGEDELAILSL 117
+++VA+ D+HG D L+ ++ SDG W GE ++ GD+ DRG +L
Sbjct: 71 KKVVALSDVHGQYDVLLTLLKKQKIIDSDGN--WAFGEGHMVMTGDMFDRGHQVNEVLWF 128
Query: 118 LRSLDMQAKAEGGAVFQVNGNHETMNVEGDFRYV 151
+ LD QA+ GG V + GNHE M + GD RYV
Sbjct: 129 MYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYV 162
>pdb|1G5B|A Chain A, Bacteriophage Lambda SerTHR PROTEIN PHOSPHATASE
pdb|1G5B|B Chain B, Bacteriophage Lambda SerTHR PROTEIN PHOSPHATASE
pdb|1G5B|C Chain C, Bacteriophage Lambda SerTHR PROTEIN PHOSPHATASE
Length = 221
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 58 RRIVAVGDLHGDLDQARCALEMAGVLSSDGLDLWTGGESVLIQLGDVLDRGEDELAILSL 117
R I VGDLHG C + L + G D + +LI +GD++DRG + + L L
Sbjct: 13 RNIWVVGDLHG------CYTNLMNKLDTIGFD---NKKDLLISVGDLVDRGAENVECLEL 63
Query: 118 LRSLDMQAKAEGGAVFQVNGNHETMNVEG 146
+ +A V GNHE M ++G
Sbjct: 64 ITFPWFRA---------VRGNHEQMMIDG 83
>pdb|2QJC|A Chain A, Crystal Structure Of A Putative Diadenosine
Tetraphosphatase
Length = 262
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 18/82 (21%)
Query: 59 RIVAVGDLHGDLDQARCALEMAGVLSSDGLDLWTGGESVLIQLGDVLDRGEDELAILSLL 118
R++ VGD+HG C ++ +L + + G L+ +GD++++G D ++ LL
Sbjct: 20 RVIIVGDIHG------CRAQLEDLLRAVS---FKQGSDTLVAVGDLVNKGPDSFGVVRLL 70
Query: 119 RSLDMQAKAEGGAVFQVNGNHE 140
+ L + V GNH+
Sbjct: 71 KRL---------GAYSVLGNHD 83
>pdb|1U32|A Chain A, Crystal Structure Of A Protein Phosphatase-1: Calcineurin
Hybrid Bound To Okadaic Acid
Length = 293
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 27/120 (22%)
Query: 41 KPIVVSGNTPTFVSAPGRRIVAVGDLHGDLDQARCALEMAGVLSSDGLDLWTGGESVLIQ 100
+PI++ P + GD+HG E G ES +
Sbjct: 44 QPILLELEAP---------LKICGDIHGQYYDLLRLFEYGGF----------PPESNYLF 84
Query: 101 LGDVLDRGEDELAILSLLRSLDMQAKAEGGAVFQVNGNHETMNVEGDFRYVDSGGFDECS 160
LGD +DRG+ L + LL + ++ F + GNHE ++ + G +DEC
Sbjct: 85 LGDYVDRGKQSLETICLLLAYKIKYPEN---FFLLRGNHECASINRIY-----GFYDECK 136
>pdb|3EGG|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGH|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3HVQ|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 329
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 18/98 (18%)
Query: 63 VGDLHGDLDQARCALEMAGVLSSDGLDLWTGGESVLIQLGDVLDRGEDELAILSLLRSLD 122
GD+HG E G ES + LGD +DRG+ L + LL +
Sbjct: 61 CGDIHGQYYDLLRLFEYGGFPP----------ESNYLFLGDYVDRGKQSLETICLLLAYK 110
Query: 123 MQAKAEGGAVFQVNGNHETMNVEGDFRYVDSGGFDECS 160
++ F + GNHE ++ + G +DEC
Sbjct: 111 IKYPEN---FFLLRGNHECASINRIY-----GFYDECK 140
>pdb|2O8A|A Chain A, Rat Pp1cgamma Complexed With Mouse Inhibitor-2
pdb|2O8A|B Chain B, Rat Pp1cgamma Complexed With Mouse Inhibitor-2
pdb|2O8G|A Chain A, Rat Pp1c Gamma Complexed With Mouse Inhibitor-2
pdb|2O8G|B Chain B, Rat Pp1c Gamma Complexed With Mouse Inhibitor-2
Length = 329
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 95 ESVLIQLGDVLDRGEDELAILSLLRSLDMQAKAEGGAVFQVNGNHETMNVEGDFRYVDSG 154
ES + LGD +DRG+ L + LL + ++ F + GNHE ++ + G
Sbjct: 90 ESNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN---FFLLRGNHECASINRIY-----G 141
Query: 155 GFDECS 160
+DEC
Sbjct: 142 FYDECK 147
>pdb|1JK7|A Chain A, Crystal Structure Of The Tumor-Promoter Okadaic Acid Bound
To Protein Phosphatase-1
pdb|1IT6|A Chain A, Crystal Structure Of The Complex Between Calyculin A And
The Catalytic Subunit Of Protein Phosphatase 1
pdb|1IT6|B Chain B, Crystal Structure Of The Complex Between Calyculin A And
The Catalytic Subunit Of Protein Phosphatase 1
pdb|2BCD|A Chain A, X-Ray Crystal Structure Of Protein Phosphatase-1 With The
Marine Toxin Motuporin Bound
pdb|2BDX|A Chain A, X-Ray Crystal Structure Of Dihydromicrocystin-La Bound To
Protein Phosphatase-1
Length = 323
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 95 ESVLIQLGDVLDRGEDELAILSLLRSLDMQAKAEGGAVFQVNGNHETMNVEGDFRYVDSG 154
ES + LGD +DRG+ L + LL + ++ F + GNHE ++ + G
Sbjct: 84 ESNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN---FFLLRGNHECASINRIY-----G 135
Query: 155 GFDECS 160
+DEC
Sbjct: 136 FYDECK 141
>pdb|1FJM|A Chain A, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type
1) Complexed With Microcystin-Lr Toxin
pdb|1FJM|B Chain B, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type
1) Complexed With Microcystin-Lr Toxin
Length = 330
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 95 ESVLIQLGDVLDRGEDELAILSLLRSLDMQAKAEGGAVFQVNGNHETMNVEGDFRYVDSG 154
ES + LGD +DRG+ L + LL + ++ F + GNHE ++ + G
Sbjct: 84 ESNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN---FFLLRGNHECASINRIY-----G 135
Query: 155 GFDECS 160
+DEC
Sbjct: 136 FYDECK 141
>pdb|4G9J|A Chain A, Protein SerTHR PHOSPHATASE-1 In Complex With
Cell-Permeable Peptide
pdb|4G9J|B Chain B, Protein SerTHR PHOSPHATASE-1 In Complex With
Cell-Permeable Peptide
Length = 331
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 95 ESVLIQLGDVLDRGEDELAILSLLRSLDMQAKAEGGAVFQVNGNHETMNVEGDFRYVDSG 154
ES + LGD +DRG+ L + LL + ++ F + GNHE ++ + G
Sbjct: 85 ESNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN---FFLLRGNHECASINRIY-----G 136
Query: 155 GFDECS 160
+DEC
Sbjct: 137 FYDECK 142
>pdb|3V4Y|A Chain A, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|C Chain C, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|E Chain E, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|G Chain G, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
Length = 306
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 95 ESVLIQLGDVLDRGEDELAILSLLRSLDMQAKAEGGAVFQVNGNHETMNVEGDFRYVDSG 154
ES + LGD +DRG+ L + LL + ++ F + GNHE ++ + G
Sbjct: 83 ESNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN---FFLLRGNHECASINRIY-----G 134
Query: 155 GFDECS 160
+DEC
Sbjct: 135 FYDECK 140
>pdb|1S70|A Chain A, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 330
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 18/98 (18%)
Query: 63 VGDLHGDLDQARCALEMAGVLSSDGLDLWTGGESVLIQLGDVLDRGEDELAILSLLRSLD 122
GD+HG E G E+ + LGD +DRG+ L + LL +
Sbjct: 64 CGDIHGQYTDLLRLFEYGGFPP----------EANYLFLGDYVDRGKQSLETICLLLAYK 113
Query: 123 MQAKAEGGAVFQVNGNHETMNVEGDFRYVDSGGFDECS 160
++ F + GNHE ++ + G +DEC
Sbjct: 114 IKYPEN---FFLLRGNHECASINRIY-----GFYDECK 143
>pdb|3E7A|A Chain A, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Nodularin-R
pdb|3E7A|B Chain B, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Nodularin-R
pdb|3E7B|A Chain A, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Inhibitor Tautomycin
pdb|3E7B|B Chain B, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Inhibitor Tautomycin
Length = 299
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 95 ESVLIQLGDVLDRGEDELAILSLLRSLDMQAKAEGGAVFQVNGNHETMNVEGDFRYVDSG 154
ES + LGD +DRG+ L + LL + ++ F + GNHE ++ + G
Sbjct: 83 ESNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN---FFLLRGNHECASINRIY-----G 134
Query: 155 GFDECS 160
+DEC
Sbjct: 135 FYDECK 140
>pdb|3N5U|A Chain A, Crystal Structure Of An Rb C-Terminal Peptide Bound To The
Catalytic Subunit Of Pp1
pdb|3N5U|B Chain B, Crystal Structure Of An Rb C-Terminal Peptide Bound To The
Catalytic Subunit Of Pp1
Length = 300
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 95 ESVLIQLGDVLDRGEDELAILSLLRSLDMQAKAEGGAVFQVNGNHETMNVEGDFRYVDSG 154
ES + LGD +DRG+ L + LL + ++ F + GNHE ++ + G
Sbjct: 84 ESNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN---FFLLRGNHECASINRIY-----G 135
Query: 155 GFDECS 160
+DEC
Sbjct: 136 FYDECK 141
>pdb|3FKR|A Chain A, Structure Of L-2-Keto-3-Deoxyarabonate Dehydratase Complex
With Pyruvate
pdb|3FKR|B Chain B, Structure Of L-2-Keto-3-Deoxyarabonate Dehydratase Complex
With Pyruvate
Length = 309
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 185 ERWKEDRR----LSRNYWGPL-NLVKRQKGVIARSVLFRPGGPMACELARH 230
E W+E R W PL N RQ G++ L R GG +A E RH
Sbjct: 230 EAWREGRHDDAYARYQAWLPLINHENRQSGILTAKALMREGGVIASERPRH 280
>pdb|3FKK|A Chain A, Structure Of L-2-Keto-3-Deoxyarabonate Dehydratase
pdb|3FKK|B Chain B, Structure Of L-2-Keto-3-Deoxyarabonate Dehydratase
Length = 309
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 185 ERWKEDRR----LSRNYWGPL-NLVKRQKGVIARSVLFRPGGPMACELARH 230
E W+E R W PL N RQ G++ L R GG +A E RH
Sbjct: 230 EAWREGRHDDAYARYQAWLPLINHENRQSGILTAKALMREGGVIASERPRH 280
>pdb|3TOC|A Chain A, Crystal Structure Of Streptococcus Pyogenes Csn2
pdb|3TOC|B Chain B, Crystal Structure Of Streptococcus Pyogenes Csn2
Length = 224
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 101 LGDVLDRGEDELAILSLLRSLDMQAKAEGGAVFQVNGNHETMNVEGDFRY---------V 151
L + LD DE+ IL L++SL ++ + + +F+ + + + F+Y V
Sbjct: 117 LENELDLEYDEITILELIKSLGVKVETQSDTIFE-----KCLEILQIFKYLTKKKLLIFV 171
Query: 152 DSGGF---DECSDFLEYLN 167
+SG F DE + EY++
Sbjct: 172 NSGAFLTKDEVASLQEYIS 190
>pdb|3V7F|A Chain A, Crystal Structure Of Streptococcus Pyogenes Csn2
pdb|3V7F|B Chain B, Crystal Structure Of Streptococcus Pyogenes Csn2
Length = 224
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 101 LGDVLDRGEDELAILSLLRSLDMQAKAEGGAVFQVNGNHETMNVEGDFRY---------V 151
L + LD DE+ IL L++SL ++ + + +F+ + + + F+Y V
Sbjct: 117 LENELDLEYDEITILELIKSLGVKVETQSDTIFE-----KCLEILQIFKYLTKKKLLIFV 171
Query: 152 DSGGF---DECSDFLEYLN 167
+SG F DE + EY++
Sbjct: 172 NSGAFLTKDEVASLQEYIS 190
>pdb|2CC0|A Chain A, Family 4 Carbohydrate Esterase From Streptomyces Lividans
In Complex With Acetate
pdb|2CC0|B Chain B, Family 4 Carbohydrate Esterase From Streptomyces Lividans
In Complex With Acetate
Length = 195
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 206 RQKGVIARSVLFRPGGPMACELARHGVVLKVNDWVFCHGGLLPHHVAYGLERMNNEVSLW 265
RQ G+ R+ +F G A + + WV H PH G +M++E+S
Sbjct: 27 RQNGL--RATMFNQGQYAAQNPSLVRAQVDAGMWVANHSYTHPHMTQLGQAQMDSEISRT 84
Query: 266 MKGLSEC-GNNPKI---PFIATR----------GYDSVVWNRLYSRDISDLEDYQISQIN 311
+ ++ G PK+ P+ T G V+W+ D +D+ + +
Sbjct: 85 QQAIAGAGGGTPKLFRPPYGETNATLRSVEAKYGLTEVIWD-------VDSQDWNNASTD 137
Query: 312 AVLQDTLR 319
A++Q R
Sbjct: 138 AIVQAVSR 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,567,285
Number of Sequences: 62578
Number of extensions: 488980
Number of successful extensions: 1165
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1154
Number of HSP's gapped (non-prelim): 25
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)