Query 016382
Match_columns 390
No_of_seqs 366 out of 1413
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 12:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.9E-34 6.4E-39 269.1 29.7 324 45-372 6-363 (491)
2 3o7q_A L-fucose-proton symport 100.0 3.1E-34 1.1E-38 263.7 22.8 293 49-373 24-347 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 6.6E-34 2.3E-38 262.5 11.3 309 47-370 24-340 (451)
4 2gfp_A EMRD, multidrug resista 100.0 2.4E-30 8.2E-35 232.9 10.1 261 54-350 3-264 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 4.4E-27 1.5E-31 219.3 21.6 288 81-371 49-374 (491)
6 2cfq_A Lactose permease; trans 99.9 1.9E-24 6.6E-29 196.9 6.6 281 61-369 17-307 (417)
7 2xut_A Proton/peptide symporte 99.9 1.1E-22 3.9E-27 191.0 12.1 150 75-227 37-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 6.6E-15 2.3E-19 135.3 14.7 172 54-228 255-433 (451)
9 4gc0_A D-xylose-proton symport 99.5 1.8E-14 6.2E-19 133.9 10.6 167 61-231 287-466 (491)
10 2cfq_A Lactose permease; trans 99.5 5.2E-14 1.8E-18 127.9 8.8 141 91-232 262-404 (417)
11 3o7q_A L-fucose-proton symport 99.5 1.4E-13 4.7E-18 126.0 9.8 152 68-224 275-428 (438)
12 4aps_A DI-OR tripeptide H+ sym 99.4 8.7E-13 3E-17 122.6 12.4 156 68-227 300-470 (491)
13 2gfp_A EMRD, multidrug resista 99.2 5.2E-12 1.8E-16 113.0 2.8 153 56-214 204-362 (375)
14 2xut_A Proton/peptide symporte 99.0 1.6E-09 5.3E-14 101.5 11.2 137 91-227 338-501 (524)
15 2g9p_A Antimicrobial peptide l 69.8 2 6.9E-05 19.7 1.1 14 107-120 2-15 (26)
16 3arc_T Photosystem II reaction 33.0 49 0.0017 16.9 2.6 11 223-233 18-28 (32)
17 4dve_A Biotin transporter BIOY 25.8 1.2E+02 0.0041 23.5 5.2 25 94-118 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.9e-34 Score=269.09 Aligned_cols=324 Identities=28% Similarity=0.458 Sum_probs=251.3
Q ss_pred CchhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCC------cchhhHHHHHHhHHHHHHHHHhHHHhhchhhhH
Q 016382 45 SWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118 (390)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr 118 (390)
+.++.+...++.+++.++.++|..+++..+|.+.++++.+. ++...|++.+++.+|..+|++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34555666667788889999999999999999988875432 223458999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHH
Q 016382 119 RAFQLCALPMIIGASISA------------------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180 (390)
Q Consensus 119 ~~l~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 180 (390)
++++++.+++.+++++++ +++|++.++++|+++|++.|...+....+++|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999998 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccC-------chhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhC
Q 016382 181 FIQIATCLGLMGSLLIGIPVKEIA-------GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG 253 (390)
Q Consensus 181 ~~~~~~~~G~~~~~~~~~~l~~~~-------g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~ 253 (390)
+.+.+..+|.++++.++..+.... .+||+.+.+..++.++..+..+++||+|+|+..+++.+++.+.+++...
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 999999999999888876554321 2389998888888888888889999999999999999999888877654
Q ss_pred CCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCch---HHHHHH
Q 016382 254 GSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFV 330 (390)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 330 (390)
.+...++..+.++..+.++ +....... ...+..........+.++...+.+..|.+...+..+.+.. ......
T Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (491)
T 4gc0_A 246 NTLATQAVQEIKHSLDHGR-KTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIV 321 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhhh-hhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHH
Confidence 4332222222111111111 11111112 2233344455555566666677778888877776665533 355667
Q ss_pred HHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhc
Q 016382 331 GIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS 372 (390)
Q Consensus 331 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
++..+++.++++++.||+|||+.+..+...+.++++.+....
T Consensus 322 ~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 322 GVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence 888899999999999999999999988888888777665443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=3.1e-34 Score=263.67 Aligned_cols=293 Identities=13% Similarity=0.116 Sum_probs=241.7
Q ss_pred hhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHH
Q 016382 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (390)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~ 128 (390)
++..+..+++..+..+++....++.+|.+.+++|.+.++. |++.+++.+++.++++++|+++||+|||++++.+.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 3555666777778888888889999999999999988877 99999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc-ccC
Q 016382 129 IIGASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EIA 204 (390)
Q Consensus 129 ~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~-~~~ 204 (390)
+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999 889999999999999999999999999999999999999999999999999999999999999998 655
Q ss_pred ch------------------------hHHHHHHHHHHHHHHHHHhhc--ccCChhhHHhcCCHHHHHHHHHHHhCCCCch
Q 016382 205 GW------------------------WRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVK 258 (390)
Q Consensus 205 g~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (390)
+. ||+.|++.++..++..+..++ .||+++. .+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~------------------ 239 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----NH------------------ 239 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----CC------------------
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----cc------------------
Confidence 54 899998766666555444433 4554320 00
Q ss_pred hHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHh-HHHHHhhcCCCchHHHHHHHHHHHHH
Q 016382 259 SSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF-SSSVFKSAGLSSGLANVFVGIANLLG 337 (390)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (390)
.++++++...++++++++|.++...+..++..........+.+.| .++.++.+..+.+.......++.+++
T Consensus 240 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 311 (438)
T 3o7q_A 240 --------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIG 311 (438)
T ss_dssp --------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --------ccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHH
Confidence 011122233456788899999988888888777777767777777 66655555555677888889999999
Q ss_pred HHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhcc
Q 016382 338 SVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS 373 (390)
Q Consensus 338 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 373 (390)
.++.+++.||++||+.+..+.++..++++++.+.++
T Consensus 312 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T 3o7q_A 312 RFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG 347 (438)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999988888888777665544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=6.6e-34 Score=262.46 Aligned_cols=309 Identities=12% Similarity=0.049 Sum_probs=236.0
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHH
Q 016382 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (390)
+.+++.+..++++.+...++.....+.+|.+.+++ .+.++. |++.+++.++..++++++|+++||+|||++++.+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 44567778888888999999999999999999999 888877 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh----hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 016382 127 PMIIGASISAT----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202 (390)
Q Consensus 127 ~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 202 (390)
+.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cCchhHHHHHHHHHHHHHHHHH-hhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhh
Q 016382 203 IAGWWRICFWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL 281 (390)
Q Consensus 203 ~~g~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (390)
..+.||+.|++.+++.++..+. .+++||+|+....+++.+... ....+ ..++.+++........+++
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~~ 248 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN----------DYPDD--YNEKAEQELTAKQIFMQYV 248 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC----------C---------------CCTHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc----------ccccc--chhhhhcccccccchHHHH
Confidence 5543899999988777665444 466788775322111110000 00000 0000001111112224677
Q ss_pred hcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh--CChHHHHHHHH
Q 016382 282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFF 359 (390)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~ 359 (390)
++++.++...+..++..........+.+.|+.+.++.+..+.+.......++.+++.++.+++.||+ ++|+.+.++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 328 (451)
T 1pw4_A 249 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM 328 (451)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 8888888888777777766666555566555443333333456678888899999999999999999 99988877776
Q ss_pred HHH-HHHHHHHH
Q 016382 360 SMA-VSMAIQVA 370 (390)
Q Consensus 360 ~~~-~~~~~~~~ 370 (390)
+.. ++++++.+
T Consensus 329 ~~~~~~~~~~~~ 340 (451)
T 1pw4_A 329 TLVTIATIVYWM 340 (451)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH
Confidence 666 55544433
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=2.4e-30 Score=232.87 Aligned_cols=261 Identities=14% Similarity=0.131 Sum_probs=223.2
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH
Q 016382 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (390)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~ 133 (390)
..+++..+...++.....+.+|.+.+++|.+.++. +++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 45566777888888888999999999999988777 9999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHH
Q 016382 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (390)
Q Consensus 134 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~ 213 (390)
+.++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+ ||+.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877 9999998
Q ss_pred HHHHHHHHHH-HhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHH
Q 016382 214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (390)
Q Consensus 214 ~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (390)
.++..++..+ ..+++||+++.. + ++++...++++++++|.++...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~----~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 206 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVD----A-----------------------------PRTRLLTSYKTLFGNSGFNCYLL 206 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTT----C-----------------------------CCCCTTTCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCCC----c-----------------------------ccccHHHHHHHHhcCcchHHHHH
Confidence 8877777665 445577765310 0 00112334567888888888888
Q ss_pred HHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 016382 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGR 350 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 350 (390)
..++..........+.+.|..+.++.+..+.+.......++.+++.++.+++.||.++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 207 MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777777777778888877777776667788888889999999999999999887
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=4.4e-27 Score=219.26 Aligned_cols=288 Identities=15% Similarity=0.129 Sum_probs=196.7
Q ss_pred cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch-hhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchh
Q 016382 81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159 (390)
Q Consensus 81 ~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 159 (390)
+|.+.++. +++.+.+.++..+++++.|+++|| +|||++++.+.++.+++.+++++++|++.++++|+++|++.+...
T Consensus 49 ~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 49 LHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp CCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 89887776 999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcCCCcc--chhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcc-cCCh----
Q 016382 160 TVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC-AESP---- 232 (390)
Q Consensus 160 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~-~e~p---- 232 (390)
+...++++|++|+++ |+++.++++.+..+|..++|.+++.+.+..+ ||+.|++.++..++..+..++. ++..
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY 205 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 999999999999988 7778888999999999999999999998888 9999999776666555444322 2211
Q ss_pred hhHHhcCCHHHHHHHHHH----------------HhCCCCchhHHHHh---------hhcccCCCCccchhhhhhcccch
Q 016382 233 HWLYKKGRTAEAEAEFEK----------------LLGGSHVKSSLAEL---------SKLDRGDDGDIVKFEELLYGRHF 287 (390)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
+....+.+.++.++..+. ..+........... .......+....+..+..+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (491)
T 4aps_A 206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSY 285 (491)
T ss_dssp SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTH
T ss_pred cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 000011122222222222 00111000000000 00000000000001111112223
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH-----HHHHHHH
Q 016382 288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ-----WSFFSMA 362 (390)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~ 362 (390)
....+...+...........++.|.++..+......+.......++.+++.++.+++.||++||+... .+..+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~ 365 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAG 365 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 44444555555555566667777777766665566788888889999999999999999999886544 6777777
Q ss_pred HHHHHHHHh
Q 016382 363 VSMAIQVAA 371 (390)
Q Consensus 363 ~~~~~~~~~ 371 (390)
++++++...
T Consensus 366 ~~~~~~~~~ 374 (491)
T 4aps_A 366 LSFLLMAIP 374 (491)
T ss_dssp HHHTTTHHH
T ss_pred HHHHHHHHH
Confidence 776655543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.90 E-value=1.9e-24 Score=196.91 Aligned_cols=281 Identities=15% Similarity=0.083 Sum_probs=178.4
Q ss_pred Hhhhhcccccccchhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH---HHH
Q 016382 61 FLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS---ISA 136 (390)
Q Consensus 61 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~---~~~ 136 (390)
+..........+.+|. +.+++|.+..+. |++.+.+.++..++++++|+++||+|||++++.+..+++++.. .++
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~ 94 (417)
T 2cfq_A 17 FFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94 (417)
T ss_dssp HHHHHHHHHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445566666 456689988877 9999999999999999999999999999999998887655322 223
Q ss_pred hhhhHH-HHHHHHHHHhhhccchhhhHHHHHhhcCCC--ccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHH
Q 016382 137 TTRNLI-GMLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (390)
Q Consensus 137 ~~~~~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~ 213 (390)
+++... .++..+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+.+. + ||+.|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~-~~~~f~~ 172 (417)
T 2cfq_A 95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N-NQFVFWL 172 (417)
T ss_dssp HHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C-SHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c-hhHHHHH
Confidence 333221 234566777766665555444445555443 4567777777777888999999999888764 4 8999998
Q ss_pred HHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHH
Q 016382 214 SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG 293 (390)
Q Consensus 214 ~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (390)
.++..++..+..++.+|+++. +.+.++ ++.++.++....+++++++++.++...+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (417)
T 2cfq_A 173 GSGCALILAVLLFFAKTDAPS---SATVAN---------------------AVGANHSAFSLKLALELFRQPKLWFLSLY 228 (417)
T ss_dssp TTTTTTTHHHHSCSSCCCCSC---SSCSSS---------------------SSSSCCCCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccccc---cccccc---------------------ccccccccccHHHHHHHhcCCchhhHHHH
Confidence 776655555555554443310 000000 00000111112345667888887766655
Q ss_pred HHHHHHHHhhchhhHHHhHHHHHhhc---CCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q 016382 294 STLFALQQLSGINAIFYFSSSVFKSA---GLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV 369 (390)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 369 (390)
.+...........+.+.|+++.++.. ....+.......++.+++.++.++++||+|||+.+..+..+.+++.+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~ 307 (417)
T 2cfq_A 229 VIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 44444333333345666665443211 11234556666778889999999999999999998888877777655543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.88 E-value=1.1e-22 Score=190.97 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=135.0
Q ss_pred hhhhhccc------cCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh-hhHHHHHHhHHHHHHHHHHHHhhh-hHHHHHH
Q 016382 75 ESISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTR-NLIGMLL 146 (390)
Q Consensus 75 ~~~~~~~~------~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~ 146 (390)
+.+.+++| .+..+. |++.+++.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.+++
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYT 114 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44677888 887777 9999999999999999999999999 999999999999999999999999 9999999
Q ss_pred HHHHHhhhccchhhhHHHHHhhcCCCccchhHHHH---HHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHH
Q 016382 147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF---IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL 223 (390)
Q Consensus 147 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~ 223 (390)
+|+++|++.+...+...+++.|++|+++|+++.+. .+....+|..++|.+++.+.+..+ ||+.|++.++..++..+
T Consensus 115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877666 889999999999999999988777 99999988777666555
Q ss_pred Hhhc
Q 016382 224 AMVF 227 (390)
Q Consensus 224 ~~~~ 227 (390)
..++
T Consensus 194 ~~~~ 197 (524)
T 2xut_A 194 FFWL 197 (524)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 4443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.61 E-value=6.6e-15 Score=135.27 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=140.1
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh--hhHHHHHHhHHHHH-
Q 016382 54 LVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMI- 129 (390)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~--Grr~~l~~~~~~~~- 129 (390)
....+..++............|.+.++ +|.+..+. +++.+.+.++..++.++.|+++||+ |||+.+..+..+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 332 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 344444444444444455666766666 78877666 8999999999999999999999999 99999888877766
Q ss_pred HHHHHHHhh--hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHH-HHHHHHHhcccccccCch
Q 016382 130 IGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAGW 206 (390)
Q Consensus 130 i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~g~ 206 (390)
++.++..+. .+.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g- 411 (451)
T 1pw4_A 333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG- 411 (451)
T ss_dssp HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 666666665 37778888889999999988888889999999999999999999999999 99999999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHhhcc
Q 016382 207 WRICFWVSIVPAAILCLAMVFC 228 (390)
Q Consensus 207 wr~~f~~~~~~~~~~~~~~~~~ 228 (390)
|+..|++.++..++..+..+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 412 WDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998877777766655443
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.54 E-value=1.8e-14 Score=133.90 Aligned_cols=167 Identities=19% Similarity=0.105 Sum_probs=115.4
Q ss_pred HhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh--
Q 016382 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-- 138 (390)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~-- 138 (390)
+........+....+.+.++.+.+.... ........+...++.++.+++.||+|||+.++.+....+++.+..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 3333334444455677777777655544 456667778888999999999999999999999988888877765543
Q ss_pred ---hhHHHHHHH-HHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC------chhH
Q 016382 139 ---RNLIGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------GWWR 208 (390)
Q Consensus 139 ---~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~------g~wr 208 (390)
++...+... -+..+++.+ ..+....+.+|.+|.+.|++++++......+|..+++.+.+.+.+.. + +.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~-~~ 442 (491)
T 4gc0_A 365 TQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH-NG 442 (491)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT-TC
T ss_pred cccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hh
Confidence 122222222 222333333 34677789999999999999999999999999888887766554321 2 45
Q ss_pred HHHHHHHHHHHHHHHH-hhcccCC
Q 016382 209 ICFWVSIVPAAILCLA-MVFCAES 231 (390)
Q Consensus 209 ~~f~~~~~~~~~~~~~-~~~~~e~ 231 (390)
+.|++.+.++++..+. .+++||+
T Consensus 443 ~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 443 FSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHheecCC
Confidence 5677766666666554 4679999
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.49 E-value=5.2e-14 Score=127.95 Aligned_cols=141 Identities=13% Similarity=-0.006 Sum_probs=119.0
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcC
Q 016382 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 170 (390)
++..++..++..++.++.|+++||+|||+++..+.++.+++.+..++.++.+.+++..++.+++.+...+....+++|.+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 77778888888899999999999999999999999888888888888888888888888888887777777788999999
Q ss_pred CCccchhHHHH-HHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHh-hcccCCh
Q 016382 171 PPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-VFCAESP 232 (390)
Q Consensus 171 ~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~-~~~~e~p 232 (390)
|++.|+++.++ ++....+|..++|.+++.+.+..+ ++..|.+.++..++..+.. .+.||++
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999998 478888999999999999988777 7888888777776665554 4456553
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.46 E-value=1.4e-13 Score=126.00 Aligned_cols=152 Identities=14% Similarity=0.026 Sum_probs=121.5
Q ss_pred cccccchhhh-hhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHH
Q 016382 68 GVVNEPLESI-SLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML 145 (390)
Q Consensus 68 ~~~~~~~~~~-~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~ 145 (390)
.......|.+ .++ +|.+..+. ++..+.+.++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI 352 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 3334455555 444 48877666 8999999999999999999999999999999999999999999888888876655
Q ss_pred HHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHH
Q 016382 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA 224 (390)
Q Consensus 146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~ 224 (390)
.. ++.|++.+...+....+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..|.++..|++.++..++..+.
T Consensus 353 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 353 AL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 44 8889999999999999999999866 888888877 5568999999999999887654677777655544444333
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.42 E-value=8.7e-13 Score=122.55 Aligned_cols=156 Identities=10% Similarity=0.003 Sum_probs=118.7
Q ss_pred cccccchhhhhh-ccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHH-----HhHHHHHHHHHHHHhhh--
Q 016382 68 GVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-----LCALPMIIGASISATTR-- 139 (390)
Q Consensus 68 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~-----~~~~~~~i~~~~~~~~~-- 139 (390)
......+|.+.+ .++.+..+. ++..+...++..++.++.|++.||+|||+... .+.++.+++.++.++..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (491)
T 4aps_A 300 EQGSVVLATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGAL 377 (491)
T ss_dssp GGGGTHHHHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred hhccHHHHHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444554444 456554444 77888888899999999999999999986655 67777777766666543
Q ss_pred -------hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHH
Q 016382 140 -------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (390)
Q Consensus 140 -------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~ 212 (390)
+.+.+++.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+.. +.+.|.
T Consensus 378 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~--~~~~~~ 455 (491)
T 4aps_A 378 YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS--EVAYFS 455 (491)
T ss_dssp CCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS--TTHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHH
Confidence 67778888999999999988999999999999999999999999999999999999999887654 466777
Q ss_pred HHHHHHHHHHHHhhc
Q 016382 213 VSIVPAAILCLAMVF 227 (390)
Q Consensus 213 ~~~~~~~~~~~~~~~ 227 (390)
+.+...++..+..++
T Consensus 456 ~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 456 YFGLGSVVLGIVLVF 470 (491)
T ss_dssp HTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666555444433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.19 E-value=5.2e-12 Score=113.04 Aligned_cols=153 Identities=15% Similarity=0.101 Sum_probs=112.2
Q ss_pred HHHHHHhhhhcccccccchhhhhhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHH-HHHHHH
Q 016382 56 ATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP-MIIGAS 133 (390)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~-~~i~~~ 133 (390)
..+..+.............|.+.++ +|.+..+. +++.+...++..++.++.+++.||+|++. ..+... ...+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~ 279 (375)
T 2gfp_A 204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLL 279 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3333344444444444556666555 78766665 89999999999999999999999999833 223222 222221
Q ss_pred --HHHh--hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHH
Q 016382 134 --ISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (390)
Q Consensus 134 --~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~ 209 (390)
.... .++.+.+++.-++.|++.+...+....++.|..| ++|+++.++.+....+|..+++.+.+.+.+..+ |+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~ 357 (375)
T 2gfp_A 280 MWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GSL 357 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HHH
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccH
Confidence 2222 2467777788899999999999999999999998 889999999999999999999999988877655 677
Q ss_pred HHHHH
Q 016382 210 CFWVS 214 (390)
Q Consensus 210 ~f~~~ 214 (390)
.+.+.
T Consensus 358 ~~~~~ 362 (375)
T 2gfp_A 358 GLLMT 362 (375)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.00 E-value=1.6e-09 Score=101.45 Aligned_cols=137 Identities=12% Similarity=0.096 Sum_probs=101.2
Q ss_pred HHHHHHhHHHHHHHHHhHHHhh----chhhh----HHHHHHhHHHHHHHHHHHHhh---------hhHHHHHHHHHHHhh
Q 016382 91 GLVVSMCLGGAFIGSTLSGWIA----DGVGR----RRAFQLCALPMIIGASISATT---------RNLIGMLLGRFVVGT 153 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~----d~~Gr----r~~l~~~~~~~~i~~~~~~~~---------~~~~~l~~~r~l~G~ 153 (390)
+++.+...++..++.++.+++. ||.|+ ++.+..+.++.+++.++.++. .+.+.+++.-++.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 6777777777777887777764 55543 356677888888887777664 367778888999999
Q ss_pred hccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCc-hh---------HHHHHHHHHHHHHHHH
Q 016382 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WW---------RICFWVSIVPAAILCL 223 (390)
Q Consensus 154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g-~w---------r~~f~~~~~~~~~~~~ 223 (390)
+.+...+....++.|..|+++|++++|+.+....+|..+++.+.+.+.+..+ .| +..|++.+...++..+
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAI 497 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876421 13 3336665555555544
Q ss_pred Hhhc
Q 016382 224 AMVF 227 (390)
Q Consensus 224 ~~~~ 227 (390)
..++
T Consensus 498 ~~~~ 501 (524)
T 2xut_A 498 VFAL 501 (524)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 4433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=69.83 E-value=2 Score=19.69 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=11.5
Q ss_pred hHHHhhchhhhHHH
Q 016382 107 LSGWIADGVGRRRA 120 (390)
Q Consensus 107 ~~g~l~d~~Grr~~ 120 (390)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999865
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=32.99 E-value=49 Score=16.88 Aligned_cols=11 Identities=27% Similarity=0.603 Sum_probs=7.0
Q ss_pred HHhhcccCChh
Q 016382 223 LAMVFCAESPH 233 (390)
Q Consensus 223 ~~~~~~~e~p~ 233 (390)
....+++|+|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 34456788875
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=25.84 E-value=1.2e+02 Score=23.54 Aligned_cols=25 Identities=8% Similarity=-0.059 Sum_probs=20.2
Q ss_pred HHHhHHHHHHHHHhHHHhhchhhhH
Q 016382 94 VSMCLGGAFIGSTLSGWIADGVGRR 118 (390)
Q Consensus 94 ~s~~~~~~~i~~~~~g~l~d~~Grr 118 (390)
+.-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567888899999999999987543
Done!