Query 016385
Match_columns 390
No_of_seqs 328 out of 1981
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 6.5E-49 1.4E-53 398.5 31.1 310 66-389 218-559 (1227)
2 cd04016 C2_Tollip C2 domain pr 99.9 1.2E-22 2.5E-27 164.1 14.1 116 261-385 1-118 (121)
3 cd08682 C2_Rab11-FIP_classI C2 99.9 1.2E-21 2.6E-26 160.6 13.6 117 264-385 1-124 (126)
4 cd08379 C2D_MCTP_PRT_plant C2 99.9 9E-21 1.9E-25 154.1 14.3 116 263-384 1-125 (126)
5 cd08395 C2C_Munc13 C2 domain t 99.9 8.7E-21 1.9E-25 152.8 13.7 109 263-372 1-116 (120)
6 cd04042 C2A_MCTP_PRT C2 domain 99.9 1.2E-20 2.7E-25 153.5 14.7 119 263-388 1-121 (121)
7 cd08681 C2_fungal_Inn1p-like C 99.9 6.3E-21 1.4E-25 154.6 12.7 114 262-385 1-115 (118)
8 cd04036 C2_cPLA2 C2 domain pre 99.8 1.8E-20 3.9E-25 152.1 13.6 113 264-385 2-114 (119)
9 cd08376 C2B_MCTP_PRT C2 domain 99.8 4.3E-20 9.4E-25 149.2 14.4 111 263-385 1-111 (116)
10 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 3.3E-20 7.1E-25 151.5 13.8 120 263-385 1-121 (123)
11 cd08375 C2_Intersectin C2 doma 99.8 5.2E-20 1.1E-24 152.5 14.5 116 259-385 12-132 (136)
12 cd04019 C2C_MCTP_PRT_plant C2 99.8 4.6E-20 9.9E-25 155.2 13.8 119 264-385 2-128 (150)
13 cd08677 C2A_Synaptotagmin-13 C 99.8 2.5E-20 5.4E-25 148.2 11.0 105 259-366 11-118 (118)
14 cd04022 C2A_MCTP_PRT_plant C2 99.8 4.4E-20 9.5E-25 151.6 12.9 117 263-385 1-122 (127)
15 cd04024 C2A_Synaptotagmin-like 99.8 7.3E-20 1.6E-24 150.5 13.5 120 262-385 1-125 (128)
16 cd08381 C2B_PI3K_class_II C2 d 99.8 4.6E-20 1E-24 150.1 12.1 105 261-366 12-121 (122)
17 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.8E-19 3.8E-24 147.6 14.7 120 261-388 3-124 (126)
18 cd04028 C2B_RIM1alpha C2 domai 99.8 1.3E-19 2.8E-24 150.7 13.8 110 260-370 27-140 (146)
19 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.8E-19 3.9E-24 146.3 14.1 116 264-385 2-118 (121)
20 KOG1030 Predicted Ca2+-depende 99.8 5.4E-20 1.2E-24 151.8 10.6 96 259-358 3-98 (168)
21 cd08678 C2_C21orf25-like C2 do 99.8 2.7E-19 5.8E-24 146.7 14.7 119 264-388 1-121 (126)
22 cd08391 C2A_C2C_Synaptotagmin_ 99.8 2.1E-19 4.6E-24 146.2 13.3 112 262-385 1-118 (121)
23 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.4E-19 3.1E-24 147.9 12.0 109 259-367 13-123 (124)
24 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.5E-19 3.3E-24 147.7 12.1 109 259-367 12-125 (125)
25 cd04029 C2A_SLP-4_5 C2 domain 99.8 2E-19 4.4E-24 146.9 12.4 109 259-367 12-125 (125)
26 cd08378 C2B_MCTP_PRT_plant C2 99.8 3.2E-19 6.9E-24 144.9 13.1 112 264-387 2-119 (121)
27 cd04015 C2_plant_PLD C2 domain 99.8 5.2E-19 1.1E-23 150.3 14.6 120 260-385 5-154 (158)
28 cd08385 C2A_Synaptotagmin-1-5- 99.8 3.8E-19 8.1E-24 145.4 12.8 109 259-367 13-123 (124)
29 cd04044 C2A_Tricalbin-like C2 99.8 6.1E-19 1.3E-23 144.1 13.4 120 261-388 1-124 (124)
30 cd04041 C2A_fungal C2 domain f 99.8 3.4E-19 7.4E-24 142.7 10.1 103 262-367 1-107 (111)
31 cd08388 C2A_Synaptotagmin-4-11 99.8 1.1E-18 2.3E-23 143.2 13.1 109 259-367 13-127 (128)
32 cd04046 C2_Calpain C2 domain p 99.8 2.3E-18 5E-23 141.1 14.9 118 260-385 1-118 (126)
33 cd08377 C2C_MCTP_PRT C2 domain 99.8 2.3E-18 5E-23 139.7 14.6 115 262-385 1-115 (119)
34 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 1.8E-18 3.8E-23 143.2 14.1 119 263-385 1-129 (133)
35 cd04010 C2B_RasA3 C2 domain se 99.8 9.7E-19 2.1E-23 146.4 12.4 106 263-370 1-124 (148)
36 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.8E-18 3.9E-23 140.6 13.1 116 264-385 2-118 (121)
37 cd08680 C2_Kibra C2 domain fou 99.8 1E-18 2.2E-23 141.9 11.3 108 259-366 11-124 (124)
38 cd08382 C2_Smurf-like C2 domai 99.8 3.2E-18 6.8E-23 139.6 14.0 117 264-385 2-121 (123)
39 cd04050 C2B_Synaptotagmin-like 99.8 1.5E-18 3.3E-23 137.5 11.8 100 263-368 1-102 (105)
40 cd08386 C2A_Synaptotagmin-7 C2 99.8 2.2E-18 4.7E-23 141.1 12.9 109 259-367 13-124 (125)
41 cd08392 C2A_SLP-3 C2 domain fi 99.8 2.2E-18 4.7E-23 141.2 12.5 108 259-366 12-127 (128)
42 cd08389 C2A_Synaptotagmin-14_1 99.8 2.2E-18 4.8E-23 140.6 12.0 108 259-367 13-123 (124)
43 cd08685 C2_RGS-like C2 domain 99.8 1.6E-18 3.5E-23 140.2 11.1 106 260-366 10-119 (119)
44 cd04017 C2D_Ferlin C2 domain f 99.8 4.9E-18 1.1E-22 140.9 14.2 118 263-389 2-134 (135)
45 cd08373 C2A_Ferlin C2 domain f 99.8 6.6E-18 1.4E-22 138.7 14.2 114 268-390 2-119 (127)
46 cd04030 C2C_KIAA1228 C2 domain 99.8 4.1E-18 9E-23 139.9 12.8 109 259-367 13-127 (127)
47 cd08521 C2A_SLP C2 domain firs 99.8 3.8E-18 8.2E-23 139.3 11.6 108 259-366 11-123 (123)
48 cd08390 C2A_Synaptotagmin-15-1 99.8 6.9E-18 1.5E-22 137.7 13.0 109 259-367 11-122 (123)
49 cd04014 C2_PKC_epsilon C2 doma 99.8 9.9E-18 2.2E-22 138.5 14.0 111 261-385 3-125 (132)
50 cd04039 C2_PSD C2 domain prese 99.8 4.5E-18 9.7E-23 135.1 11.1 94 262-358 1-99 (108)
51 cd04031 C2A_RIM1alpha C2 domai 99.8 5.9E-18 1.3E-22 138.5 12.1 108 259-367 13-125 (125)
52 cd04043 C2_Munc13_fungal C2 do 99.8 1.3E-17 2.7E-22 136.8 13.7 105 263-367 2-109 (126)
53 cd04027 C2B_Munc13 C2 domain s 99.8 1.8E-17 4E-22 135.9 14.4 114 263-385 2-126 (127)
54 cd08676 C2A_Munc13-like C2 dom 99.8 7.2E-18 1.6E-22 141.5 11.9 103 259-366 25-153 (153)
55 cd08688 C2_KIAA0528-like C2 do 99.8 5.7E-18 1.2E-22 135.3 10.5 101 264-367 1-108 (110)
56 cd04051 C2_SRC2_like C2 domain 99.8 7.4E-18 1.6E-22 138.0 10.9 115 263-384 1-125 (125)
57 cd04040 C2D_Tricalbin-like C2 99.8 1.9E-17 4.1E-22 133.5 13.1 113 264-383 1-113 (115)
58 cd04049 C2_putative_Elicitor-r 99.7 1.4E-17 3E-22 136.1 12.1 104 262-368 1-108 (124)
59 cd08675 C2B_RasGAP C2 domain s 99.7 2.3E-17 5E-22 136.9 11.7 108 264-372 1-124 (137)
60 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2.1E-17 4.6E-22 140.9 11.6 110 259-368 24-138 (162)
61 cd08394 C2A_Munc13 C2 domain f 99.7 3.6E-17 7.8E-22 131.4 12.1 99 262-369 2-102 (127)
62 cd08406 C2B_Synaptotagmin-12 C 99.7 8E-18 1.7E-22 139.1 8.0 108 259-368 12-123 (136)
63 PLN03008 Phospholipase D delta 99.7 5.5E-17 1.2E-21 164.4 14.3 126 259-390 11-180 (868)
64 cd04045 C2C_Tricalbin-like C2 99.7 7.4E-17 1.6E-21 130.8 12.2 103 262-368 1-103 (120)
65 cd08691 C2_NEDL1-like C2 domai 99.7 2.7E-16 5.9E-21 129.8 15.7 117 263-385 2-135 (137)
66 cd08407 C2B_Synaptotagmin-13 C 99.7 1.1E-17 2.5E-22 138.1 7.4 108 259-368 12-125 (138)
67 cd08690 C2_Freud-1 C2 domain f 99.7 2.1E-16 4.5E-21 132.5 14.8 116 265-385 5-133 (155)
68 cd08384 C2B_Rabphilin_Doc2 C2 99.7 2.3E-17 5E-22 136.5 8.9 108 259-368 10-121 (133)
69 cd08404 C2B_Synaptotagmin-4 C2 99.7 3.2E-17 7E-22 136.2 9.0 108 259-368 12-123 (136)
70 cd04032 C2_Perforin C2 domain 99.7 9.8E-17 2.1E-21 130.6 11.3 94 258-355 24-118 (127)
71 cd04038 C2_ArfGAP C2 domain pr 99.7 1.2E-16 2.5E-21 133.4 11.6 91 261-356 1-91 (145)
72 cd04013 C2_SynGAP_like C2 doma 99.7 3.7E-16 8.1E-21 129.6 13.8 124 258-389 7-141 (146)
73 cd04052 C2B_Tricalbin-like C2 99.7 1.1E-16 2.4E-21 128.0 10.3 100 279-389 9-111 (111)
74 cd04018 C2C_Ferlin C2 domain t 99.7 2E-16 4.4E-21 132.6 11.8 103 263-368 1-125 (151)
75 cd04037 C2E_Ferlin C2 domain f 99.7 1.2E-16 2.6E-21 130.5 9.9 92 263-355 1-92 (124)
76 cd04011 C2B_Ferlin C2 domain s 99.7 2.3E-16 5E-21 126.3 11.3 98 263-367 5-109 (111)
77 cd08403 C2B_Synaptotagmin-3-5- 99.7 7E-17 1.5E-21 133.8 8.0 108 259-368 11-122 (134)
78 cd04009 C2B_Munc13-like C2 dom 99.7 3.4E-16 7.4E-21 129.4 11.8 98 259-356 13-118 (133)
79 KOG1028 Ca2+-dependent phospho 99.7 2.9E-16 6.3E-21 153.0 13.1 129 259-389 164-296 (421)
80 cd08405 C2B_Synaptotagmin-7 C2 99.7 3.2E-16 7E-21 130.2 11.6 108 259-368 12-123 (136)
81 cd08408 C2B_Synaptotagmin-14_1 99.7 6E-16 1.3E-20 128.4 12.9 109 259-368 12-125 (138)
82 cd04026 C2_PKC_alpha_gamma C2 99.7 3.9E-16 8.4E-21 128.8 11.7 106 262-368 13-121 (131)
83 cd04048 C2A_Copine C2 domain f 99.7 3.2E-16 7E-21 127.2 11.0 101 268-368 6-114 (120)
84 cd08402 C2B_Synaptotagmin-1 C2 99.7 9.1E-17 2E-21 133.5 7.8 108 259-368 12-123 (136)
85 cd08409 C2B_Synaptotagmin-15 C 99.7 1E-16 2.2E-21 133.1 7.4 109 259-368 12-124 (137)
86 cd08692 C2B_Tac2-N C2 domain s 99.7 2.8E-16 6E-21 128.1 9.6 110 258-368 10-123 (135)
87 cd04021 C2_E3_ubiquitin_ligase 99.7 1.6E-15 3.5E-20 123.9 13.9 116 263-385 3-123 (125)
88 cd08410 C2B_Synaptotagmin-17 C 99.7 9.9E-16 2.1E-20 126.9 12.5 109 259-368 11-123 (135)
89 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.6E-15 3.4E-20 123.8 11.9 107 259-366 12-123 (123)
90 cd00276 C2B_Synaptotagmin C2 d 99.6 3.6E-16 7.7E-21 129.5 7.5 107 260-368 12-122 (134)
91 cd08383 C2A_RasGAP C2 domain ( 99.6 3.9E-15 8.6E-20 120.2 13.0 111 264-385 2-114 (117)
92 KOG0696 Serine/threonine prote 99.6 1.4E-16 3E-21 148.2 4.5 109 260-369 178-289 (683)
93 cd08686 C2_ABR C2 domain in th 99.6 4.3E-15 9.3E-20 117.8 10.6 82 264-352 1-91 (118)
94 cd00275 C2_PLC_like C2 domain 99.6 2.3E-14 4.9E-19 117.7 14.3 116 263-385 3-124 (128)
95 cd04047 C2B_Copine C2 domain s 99.6 1.8E-14 4E-19 115.0 11.4 91 268-359 6-103 (110)
96 PLN03200 cellulose synthase-in 99.6 1.2E-14 2.7E-19 160.2 11.2 116 259-385 1977-2096(2102)
97 PF00168 C2: C2 domain; Inter 99.5 6.3E-14 1.4E-18 105.9 10.2 85 264-348 1-85 (85)
98 smart00239 C2 Protein kinase C 99.4 5.7E-12 1.2E-16 97.8 11.0 96 264-359 2-97 (101)
99 KOG1011 Neurotransmitter relea 99.4 8.4E-13 1.8E-17 128.2 7.2 118 259-385 292-420 (1283)
100 cd08374 C2F_Ferlin C2 domain s 99.4 5.3E-12 1.2E-16 103.0 10.8 95 264-358 2-125 (133)
101 cd00030 C2 C2 domain. The C2 d 99.4 6.7E-12 1.5E-16 97.1 10.7 101 264-366 1-102 (102)
102 PF10296 DUF2404: Putative int 99.4 7.5E-12 1.6E-16 95.9 10.1 85 75-159 1-89 (91)
103 KOG2059 Ras GTPase-activating 99.3 3.9E-12 8.4E-17 125.1 8.2 117 262-385 5-121 (800)
104 COG5038 Ca2+-dependent lipid-b 99.3 1E-11 2.2E-16 128.6 9.4 121 259-385 1037-1157(1227)
105 PLN02270 phospholipase D alpha 99.3 3.9E-11 8.4E-16 122.4 13.4 125 260-390 6-151 (808)
106 PLN02223 phosphoinositide phos 99.2 6.4E-11 1.4E-15 116.2 12.1 105 261-368 408-519 (537)
107 KOG1028 Ca2+-dependent phospho 99.2 2E-11 4.4E-16 119.2 8.6 108 258-367 294-405 (421)
108 PLN02952 phosphoinositide phos 99.2 3.4E-10 7.4E-15 113.4 14.4 105 261-368 469-581 (599)
109 PLN02230 phosphoinositide phos 99.1 6.5E-10 1.4E-14 111.2 11.1 105 261-368 468-580 (598)
110 KOG1328 Synaptic vesicle prote 99.0 5.2E-11 1.1E-15 117.3 1.0 126 260-389 112-302 (1103)
111 PLN02222 phosphoinositide phos 99.0 1.9E-09 4.1E-14 107.8 11.7 105 261-368 451-563 (581)
112 KOG0169 Phosphoinositide-speci 99.0 9.5E-10 2.1E-14 110.2 8.6 97 263-359 617-720 (746)
113 PLN02228 Phosphoinositide phos 99.0 4.5E-09 9.8E-14 104.8 11.6 105 261-368 430-543 (567)
114 KOG1328 Synaptic vesicle prote 98.9 7.4E-10 1.6E-14 109.4 1.8 96 260-355 945-1048(1103)
115 cd08689 C2_fungal_Pkc1p C2 dom 98.9 1.1E-08 2.4E-13 78.6 7.7 85 264-356 1-88 (109)
116 KOG1264 Phospholipase C [Lipid 98.8 1.8E-08 3.8E-13 100.9 10.5 95 262-357 1065-1163(1267)
117 KOG1031 Predicted Ca2+-depende 98.8 1.3E-08 2.7E-13 98.6 8.8 116 262-385 3-132 (1169)
118 PLN02352 phospholipase D epsil 98.8 4.7E-08 1E-12 99.9 12.4 119 259-390 7-133 (758)
119 KOG2059 Ras GTPase-activating 98.6 4.5E-08 9.6E-13 97.0 6.2 116 269-385 138-272 (800)
120 KOG3532 Predicted protein kina 98.5 6.2E-07 1.3E-11 88.5 10.6 227 58-293 81-358 (1051)
121 KOG0905 Phosphoinositide 3-kin 98.4 1.8E-07 3.9E-12 97.2 4.5 109 260-368 1522-1635(1639)
122 KOG1327 Copine [Signal transdu 98.4 1E-06 2.2E-11 86.3 8.8 118 269-387 143-269 (529)
123 KOG1011 Neurotransmitter relea 98.3 2E-06 4.4E-11 84.6 9.4 111 261-372 1124-1241(1283)
124 KOG1326 Membrane-associated pr 98.3 3.7E-07 8.1E-12 93.7 3.0 92 261-353 612-703 (1105)
125 KOG1013 Synaptic vesicle prote 98.2 1.3E-06 2.8E-11 79.8 4.7 104 260-365 231-338 (362)
126 KOG1013 Synaptic vesicle prote 98.0 6.9E-07 1.5E-11 81.5 -0.9 129 257-385 88-225 (362)
127 PLN02964 phosphatidylserine de 98.0 9.8E-06 2.1E-10 82.6 6.7 90 259-357 51-140 (644)
128 cd08683 C2_C2cd3 C2 domain fou 97.8 4.3E-05 9.3E-10 60.9 6.2 103 264-366 1-143 (143)
129 cd08684 C2A_Tac2-N C2 domain f 97.7 4.6E-05 1E-09 56.3 3.5 98 265-365 2-102 (103)
130 KOG1326 Membrane-associated pr 97.5 2.2E-05 4.7E-10 81.2 -0.1 104 261-368 205-317 (1105)
131 KOG2060 Rab3 effector RIM1 and 97.2 0.0004 8.7E-09 64.9 4.0 111 259-370 266-381 (405)
132 PF15627 CEP76-C2: CEP76 C2 do 96.7 0.021 4.5E-07 47.8 10.3 123 260-385 7-146 (156)
133 KOG3837 Uncharacterized conser 96.6 0.0014 3.1E-08 62.0 3.0 109 260-368 365-487 (523)
134 PF12416 DUF3668: Cep120 prote 95.9 0.12 2.6E-06 49.2 11.8 100 264-369 2-114 (340)
135 KOG1265 Phospholipase C [Lipid 95.9 0.02 4.4E-07 59.3 6.8 92 259-358 700-798 (1189)
136 cd08398 C2_PI3K_class_I_alpha 94.8 0.26 5.7E-06 41.6 9.2 99 262-364 8-121 (158)
137 cd08693 C2_PI3K_class_I_beta_d 94.8 0.28 6.1E-06 42.2 9.5 89 263-353 9-119 (173)
138 cd08380 C2_PI3K_like C2 domain 94.6 0.27 5.8E-06 41.5 9.0 91 263-354 9-107 (156)
139 KOG1327 Copine [Signal transdu 94.6 0.067 1.5E-06 53.2 5.9 61 297-357 41-105 (529)
140 KOG1452 Predicted Rho GTPase-a 94.5 0.096 2.1E-06 48.2 6.1 81 259-343 48-130 (442)
141 PF10358 NT-C2: N-terminal C2 94.4 2.2 4.9E-05 35.0 14.0 103 262-368 7-120 (143)
142 cd08397 C2_PI3K_class_III C2 d 94.0 0.25 5.5E-06 41.8 7.3 74 281-354 28-107 (159)
143 cd04012 C2A_PI3K_class_II C2 d 93.0 0.39 8.4E-06 41.2 7.1 93 262-354 8-119 (171)
144 cd08687 C2_PKN-like C2 domain 92.0 2.1 4.5E-05 32.3 8.7 66 281-354 7-72 (98)
145 PF00792 PI3K_C2: Phosphoinosi 91.9 2.3 5E-05 35.1 10.2 56 299-354 22-85 (142)
146 PF14429 DOCK-C2: C2 domain in 91.6 1.2 2.6E-05 38.6 8.5 57 297-353 59-120 (184)
147 cd08399 C2_PI3K_class_I_gamma 90.0 2.2 4.8E-05 36.7 8.5 89 263-353 11-121 (178)
148 KOG1329 Phospholipase D1 [Lipi 88.7 0.57 1.2E-05 49.3 4.6 85 282-369 137-222 (887)
149 KOG2238 Uncharacterized conser 88.0 0.16 3.5E-06 52.3 0.2 89 69-157 334-426 (795)
150 cd08695 C2_Dock-B C2 domains f 87.5 1.8 4E-05 37.5 6.4 56 297-352 53-112 (189)
151 cd08697 C2_Dock-D C2 domains f 86.6 8.3 0.00018 33.4 9.9 57 297-353 56-123 (185)
152 PF01102 Glycophorin_A: Glycop 86.5 0.37 8E-06 38.6 1.4 29 4-32 66-94 (122)
153 PF15625 CC2D2AN-C2: CC2D2A N- 86.4 8.8 0.00019 32.7 10.0 84 282-369 36-125 (168)
154 cd08694 C2_Dock-A C2 domains f 86.1 4 8.6E-05 35.6 7.6 56 297-352 53-114 (196)
155 PF11618 DUF3250: Protein of u 84.7 5.6 0.00012 31.2 7.2 83 296-385 10-101 (107)
156 smart00142 PI3K_C2 Phosphoinos 84.4 5.7 0.00012 30.6 7.2 74 264-337 13-92 (100)
157 cd08679 C2_DOCK180_related C2 82.4 4.1 8.8E-05 35.1 6.2 54 299-353 55-115 (178)
158 cd08696 C2_Dock-C C2 domains f 82.1 4.2 9.1E-05 35.1 6.1 56 297-352 54-117 (179)
159 PTZ00447 apical membrane antig 67.8 81 0.0018 30.0 10.7 107 263-385 59-169 (508)
160 PF12732 YtxH: YtxH-like prote 65.0 4.6 9.9E-05 29.2 1.8 20 3-22 1-20 (74)
161 PF14909 SPATA6: Spermatogenes 63.2 85 0.0018 25.9 10.1 84 264-354 4-99 (140)
162 KOG4092 Mitochondrial F1F0-ATP 62.6 5.2 0.00011 30.1 1.7 45 56-100 36-80 (108)
163 KOG4269 Rac GTPase-activating 61.4 4.5 9.7E-05 42.8 1.6 89 256-351 753-853 (1112)
164 PF06295 DUF1043: Protein of u 58.3 16 0.00035 29.6 4.0 19 4-22 3-21 (128)
165 PF15179 Myc_target_1: Myc tar 57.3 4.2 9.1E-05 34.6 0.5 24 1-24 23-46 (197)
166 PF15102 TMEM154: TMEM154 prot 54.2 6 0.00013 32.6 0.9 7 71-77 131-137 (146)
167 PF06305 DUF1049: Protein of u 52.3 19 0.00042 25.2 3.2 17 4-20 25-41 (68)
168 PF07162 B9-C2: Ciliary basal 51.9 1.5E+02 0.0032 25.1 11.0 92 267-365 7-117 (168)
169 PF14356 DUF4403: Domain of un 50.1 2.5E+02 0.0053 27.9 11.7 87 119-242 280-367 (427)
170 PF01102 Glycophorin_A: Glycop 49.1 8.5 0.00019 30.9 1.0 28 2-30 68-95 (122)
171 PF01034 Syndecan: Syndecan do 43.2 7.1 0.00015 27.3 -0.2 21 2-22 13-33 (64)
172 KOG0694 Serine/threonine prote 42.8 4.7 0.0001 41.5 -1.7 56 282-341 27-82 (694)
173 PF14023 DUF4239: Protein of u 42.4 93 0.002 27.3 6.8 26 4-29 4-29 (209)
174 PF12732 YtxH: YtxH-like prote 40.6 20 0.00043 25.9 1.8 18 2-19 4-21 (74)
175 PF14851 FAM176: FAM176 family 38.3 17 0.00038 30.3 1.3 22 3-24 26-47 (153)
176 PRK11677 hypothetical protein; 38.1 58 0.0013 26.6 4.2 17 4-20 7-23 (134)
177 PF05393 Hum_adeno_E3A: Human 37.9 18 0.00038 26.9 1.1 30 2-32 34-63 (94)
178 PF01034 Syndecan: Syndecan do 37.2 11 0.00024 26.3 -0.0 30 3-32 10-39 (64)
179 COG4064 MtrG Tetrahydromethano 34.6 23 0.00051 25.0 1.2 15 5-19 50-64 (75)
180 COG3887 Predicted signaling pr 34.6 45 0.00098 34.2 3.7 26 58-83 83-109 (655)
181 PF13373 DUF2407_C: DUF2407 C- 34.6 22 0.00048 29.3 1.4 21 2-22 91-111 (140)
182 PF04210 MtrG: Tetrahydrometha 33.2 26 0.00056 24.9 1.3 16 5-20 47-62 (70)
183 PF04971 Lysis_S: Lysis protei 31.5 46 0.00099 23.6 2.3 16 5-20 36-51 (68)
184 COG4943 Predicted signal trans 31.5 34 0.00074 34.1 2.2 38 3-40 241-278 (524)
185 PF04478 Mid2: Mid2 like cell 30.3 22 0.00048 29.6 0.7 22 2-23 53-74 (154)
186 PRK01026 tetrahydromethanopter 30.1 32 0.0007 25.0 1.4 14 6-19 51-64 (77)
187 COG4980 GvpP Gas vesicle prote 29.4 37 0.0008 26.9 1.7 21 2-22 6-26 (115)
188 PF12273 RCR: Chitin synthesis 28.1 31 0.00067 27.9 1.2 15 7-21 4-18 (130)
189 TIGR01149 mtrG N5-methyltetrah 28.0 42 0.0009 23.8 1.6 13 6-18 48-60 (70)
190 CHL00008 petG cytochrome b6/f 27.9 36 0.00078 20.7 1.1 17 3-19 5-25 (37)
191 PF10206 WRW: Mitochondrial F1 27.8 50 0.0011 25.7 2.2 35 56-90 36-70 (104)
192 PRK00665 petG cytochrome b6-f 26.9 37 0.00081 20.7 1.0 17 3-19 5-25 (37)
193 PF01060 DUF290: Transthyretin 26.8 1.2E+02 0.0027 22.0 4.1 25 326-350 12-36 (80)
194 PF14186 Aida_C2: Cytoskeletal 26.3 3.8E+02 0.0083 22.3 9.2 94 262-358 13-116 (147)
195 PF06219 DUF1005: Protein of u 25.8 5.4E+02 0.012 25.4 9.1 103 282-385 35-163 (460)
196 PF06305 DUF1049: Protein of u 25.4 79 0.0017 22.0 2.8 17 3-19 28-44 (68)
197 PF14924 DUF4497: Protein of u 25.2 2.2E+02 0.0048 22.2 5.6 57 324-385 27-100 (112)
198 PF06667 PspB: Phage shock pro 23.9 49 0.0011 24.1 1.4 6 57-62 67-72 (75)
199 PF12664 DUF3789: Protein of u 23.8 32 0.0007 20.8 0.4 21 2-22 4-24 (34)
200 KOG4027 Uncharacterized conser 23.6 4.5E+02 0.0098 22.2 7.7 42 311-352 65-109 (187)
201 PF02529 PetG: Cytochrome B6-F 23.1 44 0.00095 20.5 0.9 17 3-19 5-25 (37)
202 PF12297 EVC2_like: Ellis van 22.5 41 0.00088 32.8 1.0 20 2-21 69-88 (429)
203 PF02439 Adeno_E3_CR2: Adenovi 21.9 44 0.00095 20.7 0.7 15 5-19 6-20 (38)
204 PF12597 DUF3767: Protein of u 21.1 61 0.0013 25.9 1.6 18 2-19 43-60 (118)
205 KOG0904 Phosphatidylinositol 3 20.9 4E+02 0.0088 29.0 7.7 90 261-353 342-455 (1076)
206 COG5336 Uncharacterized protei 20.8 74 0.0016 24.9 1.9 15 3-17 52-66 (116)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=6.5e-49 Score=398.49 Aligned_cols=310 Identities=29% Similarity=0.540 Sum_probs=273.7
Q ss_pred CCcccHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhhcCCCccceEEEeEEecCCCCCeEeeEEEEec-CCCeEEEEEE
Q 016385 66 SHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELE 144 (390)
Q Consensus 66 ~~~E~~~WlN~~l~~~Wp~~~~~~~~~i~~~l~~~l~~~~p~~l~~i~~~~~~lG~~~P~i~~ir~~~~-~~~~v~le~~ 144 (390)
.|+|++||||.+|+++||.+++.+++.+.+++|+.|.+..|+||+.+.+.+||||++||+|.+||.|+. +.+.+.||++
T Consensus 218 nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~ 297 (1227)
T COG5038 218 NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD 297 (1227)
T ss_pred cchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence 578999999999999999999999999999999999999999999999999999999999999999988 6789999999
Q ss_pred EEEee---------------CceEEEEEE--eecC-eeeeEEEEEEEEEEEEEEEEeeCCcCCCccceEEEEeccceeEE
Q 016385 145 MQWDA---------------NSSIILAIK--TRLG-VALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLD 206 (390)
Q Consensus 145 ~~~~~---------------~~~i~l~v~--~~~g-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~~f~~~P~l~ 206 (390)
+++.- ++.|.|.++ ..+| +++||.|+++.|.|++|++++ |++.+|++..+.++|++.|.+|
T Consensus 298 ~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~d 376 (1227)
T COG5038 298 FSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFD 376 (1227)
T ss_pred eccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCccee
Confidence 99962 344666664 2345 789999999999999999999 9999999999999999999999
Q ss_pred EEEEEcc-----cccccCCCcHHHHHHHHHHHhhccccCCceeEeeCC---CCCcccccccceeEEEEEEeeecCCcccc
Q 016385 207 FKLKVVG-----GDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPIL---PGDYSELELKPVGTLEVKLVQAKGLTNKD 278 (390)
Q Consensus 207 f~l~~~g-----~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~ipl~---~~~~~~~~~~~~g~L~V~v~~a~~L~~~d 278 (390)
|.+.++| .|++++|||+.|++++|..+++.++++|+.+.+++. .++ ...+.|++.|+|.+|++|...+
T Consensus 377 f~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~----s~~aIGVv~vkI~sa~~lk~~d 452 (1227)
T COG5038 377 FILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGD----SGTAIGVVEVKIKSAEGLKKSD 452 (1227)
T ss_pred EEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccc----cCCeeEEEEEEEeeccCccccc
Confidence 9999976 489999999999999999999999999999998653 232 3478999999999999999888
Q ss_pred --CCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCC
Q 016385 279 --LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP 356 (390)
Q Consensus 279 --~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~ 356 (390)
..+..|||+.+... +....||++.+++.||+|||+|++.+... ++.|.++|||.+...+|+.+|++.++|..+..
T Consensus 453 ~~i~~~vDpyit~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~ 529 (1227)
T COG5038 453 STINGTVDPYITVTFS--DRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQ 529 (1227)
T ss_pred ccccCCCCceEEEEec--cccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhh
Confidence 67899999999965 34456999999999999999999999865 56999999998888999999999999998876
Q ss_pred Cceee-EEEEcccccccCCCCeeeeEEEEE--Eeec
Q 016385 357 GKVKD-VWLKLVKDLDVQRDTKYRGQVRIK--YPPY 389 (390)
Q Consensus 357 ~~~~~-~w~~L~~~~~~~~~~~~~G~i~l~--y~p~ 389 (390)
..... +-+.+ ..+.+..|+++.+ |+|+
T Consensus 530 ~~~~~ne~~e~------~~~~k~vGrL~yDl~ffp~ 559 (1227)
T COG5038 530 NPVKKNELYEF------LRNTKNVGRLTYDLRFFPV 559 (1227)
T ss_pred ccccccceeee------eccCccceEEEEeeeeecc
Confidence 55433 33344 3377889999999 9886
No 2
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.89 E-value=1.2e-22 Score=164.10 Aligned_cols=116 Identities=23% Similarity=0.438 Sum_probs=100.7
Q ss_pred eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCC-CCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCC
Q 016385 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~ 339 (390)
.|.|+|+|++|++++..+ .|++||||++.++ .++.+|+++.+ +.||.|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg---~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVG---HAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEEC---CEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999988777 7999999999997 56789999865 79999999999999764 458999999999999
Q ss_pred CCceeEEEEEEcc-ccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 340 SSELIGCAQVRLC-ELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 340 ~d~~lG~~~v~l~-~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
+|++||++.+++. .+..|...+.|++|.+. +.....|+|+|+
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~----~~~~~~g~i~l~ 118 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK----QGEDKEGMINLV 118 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc----cCCCCceEEEEE
Confidence 9999999999996 57788888999999753 234577999998
No 3
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.87 E-value=1.2e-21 Score=160.65 Aligned_cols=117 Identities=21% Similarity=0.482 Sum_probs=101.9
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEec-----CCCCEEEEEEEEcCCC
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-----ESTQHLVVRIYDDEGI 338 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~-----~~~~~L~v~v~d~d~~ 338 (390)
++|+|++|++|+.++..|.+||||+++++ .++++|++++++.||.|||+|.|.+.. +..+.|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~---~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG---KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC---CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 47999999999999888999999999996 567899999999999999999999976 3567899999999998
Q ss_pred CCCceeEEEEEEccccC--CCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 339 QSSELIGCAQVRLCELE--PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 339 ~~d~~lG~~~v~l~~l~--~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
++|++||++.++++++. .+...+.|++|.+... +..+.+|+|+++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~--~~~~~~Gei~l~ 124 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG--KDDKERGEIEVD 124 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC--CCccccceEEEE
Confidence 88999999999999987 5677889999975322 345678999986
No 4
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.86 E-value=9e-21 Score=154.08 Aligned_cols=116 Identities=31% Similarity=0.451 Sum_probs=101.2
Q ss_pred EEEEEEeeecC---CccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC-
Q 016385 263 TLEVKLVQAKG---LTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI- 338 (390)
Q Consensus 263 ~L~V~v~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~- 338 (390)
.|+|+|++|++ |..+|..|.+||||++.++ .++.+|+++++++||.|||+|.|.+.++. ..|.|+|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g---~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG---PKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEEC---CEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 37899999999 8888989999999999996 67889999999999999999999998764 4899999999886
Q ss_pred -----CCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEE
Q 016385 339 -----QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRI 384 (390)
Q Consensus 339 -----~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l 384 (390)
++|++||++.+++.++..+...+.|++|.... .+..+..|+|+.
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN--PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC--CCCccCCcEEEe
Confidence 38999999999999999999999999997532 124667788875
No 5
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.86 E-value=8.7e-21 Score=152.82 Aligned_cols=109 Identities=22% Similarity=0.376 Sum_probs=94.0
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEe----cCCCceEeeeccCCCCCCeeeeEEEEEEec---CCCCEEEEEEEEc
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVR----PLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYDD 335 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~----~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~---~~~~~L~v~v~d~ 335 (390)
.|+|+|++|++|+..+ .|.+||||++++. +...++++|+++++++||.|||+|.|.+.. +....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999887 4999999999984 222346789999999999999999999974 3446799999999
Q ss_pred CCCCCCceeEEEEEEccccCCCceeeEEEEccccccc
Q 016385 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV 372 (390)
Q Consensus 336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~ 372 (390)
+..++|++||++.+++.++..+...+.|++|.+..++
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~~ 116 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHM 116 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcccc
Confidence 9888899999999999999988889999999876544
No 6
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.86 E-value=1.2e-20 Score=153.53 Aligned_cols=119 Identities=33% Similarity=0.533 Sum_probs=104.9
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 342 (390)
.|+|+|++|++|+..|..|.+||||+++++ +...++|++++++.||.|||+|.|.+.+. .+.|.++|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 378999999999999988999999999986 24678999999999999999999998765 568999999999998999
Q ss_pred eeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPP 388 (390)
Q Consensus 343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p 388 (390)
+||++.+++.++..+...+.|++|... ++.+..|+|++. |.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~----~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP----NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC----CCccCceEEEEEEEECC
Confidence 999999999999988889999999642 134678999998 766
No 7
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.86 E-value=6.3e-21 Score=154.59 Aligned_cols=114 Identities=33% Similarity=0.550 Sum_probs=100.4
Q ss_pred eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccC-CCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCC
Q 016385 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~ 340 (390)
|.|+|+|++|++|++.+..+.+||||+++++ .++++|+++. ++.||.|||.|.|.+.....+.|.++|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999988999999999997 4677888874 5799999999999998766779999999999876
Q ss_pred CceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 341 d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
|++||++.+++.++..+...+.|++|.. +++.+|+|+++
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~------~~~~~G~i~l~ 115 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL------KGRYAGEVYLE 115 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc------CCcEeeEEEEE
Confidence 9999999999999877767789999964 45688999987
No 8
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.85 E-value=1.8e-20 Score=152.12 Aligned_cols=113 Identities=26% Similarity=0.530 Sum_probs=100.6
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (390)
|+|+|++|++|++.+..+.+||||++++.+.+...++|++++++.||.|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999988889999999999865445678999999999999999999999776667899999999998 8999
Q ss_pred eEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 344 lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
||++.+++.++..+...+.|++|.+ +.+|+|+++
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~--------~~~g~l~~~ 114 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNP--------QGKEELEVE 114 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCC--------CCCceEEEE
Confidence 9999999999999999999999953 357888876
No 9
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.84 E-value=4.3e-20 Score=149.18 Aligned_cols=111 Identities=28% Similarity=0.452 Sum_probs=100.4
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 342 (390)
+++|+|++|++|+..+..+.+||||+++++ ++.++|++++++.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG---NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC---CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999986 56789999999999999999999998776789999999999988999
Q ss_pred eeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
+||++.++++++..+...+.|++|.+ ..|+|++.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~---------~~G~~~~~ 111 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELED---------GEGSLLLL 111 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEccC---------CCcEEEEE
Confidence 99999999999988888999999963 15888776
No 10
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.84 E-value=3.3e-20 Score=151.50 Aligned_cols=120 Identities=25% Similarity=0.498 Sum_probs=105.2
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 342 (390)
+|+|+|++|++|...+..+.+||||+++++ ....+|++++++.||.|||+|.|.+.+.....|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC---CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 489999999999999888899999999986 56789999999999999999999998766678999999999988999
Q ss_pred eeEEEEEEccccCCCceeeEEEEccccccc-CCCCeeeeEEEEE
Q 016385 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDV-QRDTKYRGQVRIK 385 (390)
Q Consensus 343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~G~i~l~ 385 (390)
+||++.++++++..+...+.|+.|.+.... .+.++..|.|++.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~ 121 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLK 121 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEE
Confidence 999999999999877777899999874332 3467888999875
No 11
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.84 E-value=5.2e-20 Score=152.49 Aligned_cols=116 Identities=26% Similarity=0.486 Sum_probs=100.8
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~ 338 (390)
...|.|+|+|++|++|++.|..|.+||||+++++ .+.++|++++++.||.|||+|.|.+.++..+.|.++|||++..
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~---~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~ 88 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG---SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF 88 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence 5789999999999999999989999999999986 5689999999999999999999999887777999999999998
Q ss_pred CCCceeEEEEEEccccCC-----CceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 339 QSSELIGCAQVRLCELEP-----GKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 339 ~~d~~lG~~~v~l~~l~~-----~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
++|++||++.+++.++.. ......|..+ ..+.+|+|+++
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~--------~~~~~g~i~l~ 132 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL--------HEVPTGEVVVK 132 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEecc--------ccccceeEEEE
Confidence 899999999999999865 2222345444 45678999987
No 12
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=4.6e-20 Score=155.17 Aligned_cols=119 Identities=20% Similarity=0.420 Sum_probs=101.9
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCC-CCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 342 (390)
|+|+|++|++|+.++..|.+||||+++++ .+..+|+++.+ +.||.|||.|.|.+.++..+.+.++|||++..++|+
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd 78 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDE 78 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCC
Confidence 78999999999999999999999999997 57888998866 699999999999998766679999999999888899
Q ss_pred eeEEEEEEccccCCC----ceeeEEEEcccccc---cCCCCeeeeEEEEE
Q 016385 343 LIGCAQVRLCELEPG----KVKDVWLKLVKDLD---VQRDTKYRGQVRIK 385 (390)
Q Consensus 343 ~lG~~~v~l~~l~~~----~~~~~w~~L~~~~~---~~~~~~~~G~i~l~ 385 (390)
+||++.++++++..+ ...+.|++|.+..+ .++..+.+|+|++.
T Consensus 79 ~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~ 128 (150)
T cd04019 79 PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLR 128 (150)
T ss_pred eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEE
Confidence 999999999998643 45689999987532 12345678999988
No 13
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.83 E-value=2.5e-20 Score=148.22 Aligned_cols=105 Identities=15% Similarity=0.251 Sum_probs=91.3
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecC-CCceEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEEEc
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYDD 335 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~d~ 335 (390)
...|.|+|+|++|++|+ ..|.+||||++++.+. +..+++|+++++|+||.|||+|.|.+.. ..+..|.++|||+
T Consensus 11 ~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~ 87 (118)
T cd08677 11 KQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCC 87 (118)
T ss_pred CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence 56899999999999998 3467999999999753 3357789999999999999999999865 3567899999999
Q ss_pred CCCCCCceeEEEEEEccccCCCceeeEEEEc
Q 016385 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (390)
Q Consensus 336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L 366 (390)
|.++++++||++.++++++..+...++|-+|
T Consensus 88 Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 88 DRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999999999999988777778889654
No 14
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.83 E-value=4.4e-20 Score=151.58 Aligned_cols=117 Identities=30% Similarity=0.428 Sum_probs=100.8
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCC---CCEEEEEEEEcCCCC
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES---TQHLVVRIYDDEGIQ 339 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~---~~~L~v~v~d~d~~~ 339 (390)
.|+|+|++|++|...+..|.+||||+++++ .+.++|++++++.||.|||.|.|.+.++. ...|.++|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 378999999999999888999999999987 56789999999999999999999987542 368999999999876
Q ss_pred -CCceeEEEEEEccccC-CCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 340 -SSELIGCAQVRLCELE-PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 340 -~d~~lG~~~v~l~~l~-~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
++++||++.++++++. .+.....|++|.+.. ..++.+|+|+++
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~ 122 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG---LFSRVRGEIGLK 122 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC---CCCCccEEEEEE
Confidence 7999999999999987 567778999997531 134578999998
No 15
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.83 E-value=7.3e-20 Score=150.50 Aligned_cols=120 Identities=33% Similarity=0.516 Sum_probs=103.7
Q ss_pred eEEEEEEeeecCCccccC--CCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCC
Q 016385 262 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~ 339 (390)
|.|+|+|++|++|+..+. .+.+||||+++++ .+.++|++++++.||.|||+|.|.+.+...+.|.++|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG---AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC---CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 8899999999986 56789999999999999999999998766789999999999988
Q ss_pred CCceeEEEEEEccccC---CCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 340 SSELIGCAQVRLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 340 ~d~~lG~~~v~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
++++||++.+++.++. .....+.|++|.+.... +....+|+|+++
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~-~~~~~~G~i~l~ 125 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPG-KTSVVSGEIHLQ 125 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCcccC-ccccccceEEEE
Confidence 8999999999999986 23446899999764222 345678999987
No 16
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.83 E-value=4.6e-20 Score=150.06 Aligned_cols=105 Identities=27% Similarity=0.456 Sum_probs=94.1
Q ss_pred eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEE-e--cCCCCEEEEEEEEc
Q 016385 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIV-E--DESTQHLVVRIYDD 335 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v-~--~~~~~~L~v~v~d~ 335 (390)
.|.|.|+|++|++|+..+ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 688999999999999999 8999999999998654 3478999999999999999999987 2 33567899999999
Q ss_pred CCCCCCceeEEEEEEccccCCCceeeEEEEc
Q 016385 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (390)
Q Consensus 336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L 366 (390)
+..+++++||++.+++.++..+...+.|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999888878999987
No 17
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.83 E-value=1.8e-19 Score=147.59 Aligned_cols=120 Identities=23% Similarity=0.404 Sum_probs=100.0
Q ss_pred eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCC
Q 016385 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~ 340 (390)
...|+|+|++|++|+.. +.+||||+++++ +.+..+|++. ++.||.|||+|.|.+.......+.+.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLN--EVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 45799999999999864 478999999996 2345788874 68999999999998765544689999999999999
Q ss_pred CceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385 341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPP 388 (390)
Q Consensus 341 d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p 388 (390)
|++||++.+++.++..+...+.|++|.+... ...+..|+|+++ |.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~--~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSASP--LKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCCC--CCCCcCcEEEEEEEEEc
Confidence 9999999999999988888899999986421 245677999999 865
No 18
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.83 E-value=1.3e-19 Score=150.73 Aligned_cols=110 Identities=25% Similarity=0.430 Sum_probs=96.5
Q ss_pred ceeEEEEEEeeecCCcccc-CCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEE-Ec
Q 016385 260 PVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DD 335 (390)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~-d~ 335 (390)
..|.|.|+|++|++|...+ ..|.+||||++++.+.+. .++||+++++++||.|||+|.|.+. ..+..|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 3589999999999998864 568899999999986543 3789999999999999999999998 66779999999 67
Q ss_pred CCCCCCceeEEEEEEccccCCCceeeEEEEccccc
Q 016385 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL 370 (390)
Q Consensus 336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~ 370 (390)
+.++++++||++.++|+++..+.....|++|.+..
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 88888999999999999997777788999998754
No 19
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.82 E-value=1.8e-19 Score=146.34 Aligned_cols=116 Identities=26% Similarity=0.445 Sum_probs=99.3
Q ss_pred EEEEEeeecCCcccc-CCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385 264 LEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (390)
Q Consensus 264 L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 342 (390)
|.|+|++|++|+..+ ..|.+||||.++++ +...++|+++++++||.|||+|.|.+.+. ...|.|.|||++.+++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 679999999999864 45789999999996 33468999999999999999999999754 469999999999999999
Q ss_pred eeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
+||++.++++++..+...+.|++|.+. ..+.+.+|+|+++
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~---~~~~~~~G~i~l~ 118 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPV---DADSEVQGKVHLE 118 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEcc---CCCCcccEEEEEE
Confidence 999999999999888888999999863 1234468999986
No 20
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.82 E-value=5.4e-20 Score=151.80 Aligned_cols=96 Identities=34% Similarity=0.619 Sum_probs=88.8
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~ 338 (390)
...|.|+|+|.+|.+|..+|..+++||||++.++ .++.+|+++++++||+|||.|.|.+.++ ...|.+.|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg---~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG---NQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEEC---CeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 4689999999999999999988999999999998 7889999999999999999999999988 45999999999999
Q ss_pred CCCceeEEEEEEccccCCCc
Q 016385 339 QSSELIGCAQVRLCELEPGK 358 (390)
Q Consensus 339 ~~d~~lG~~~v~l~~l~~~~ 358 (390)
++||++|.+++++..+....
T Consensus 79 s~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred CcccccceeeeccHHHHHHh
Confidence 99999999999998875543
No 21
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.82 E-value=2.7e-19 Score=146.69 Aligned_cols=119 Identities=29% Similarity=0.480 Sum_probs=101.2
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (390)
|.|+|++|++|+. ..|.+||||++++.. ..+.++|++++++.||.|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE-PPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC-CCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999987 678999999999862 2456899999999999999999999864 36689999999999889999
Q ss_pred eEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPP 388 (390)
Q Consensus 344 lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p 388 (390)
||++.++++++..+...+.|++|.+... ++....|+|+++ |.+
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY--EGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC--CCCCcceEEEEEEEEec
Confidence 9999999999988877889999975321 245678999998 654
No 22
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.82 E-value=2.1e-19 Score=146.18 Aligned_cols=112 Identities=34% Similarity=0.622 Sum_probs=99.3
Q ss_pred eEEEEEEeeecCCccccC------CCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEc
Q 016385 262 GTLEVKLVQAKGLTNKDL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 335 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~ 335 (390)
|.|+|+|++|++|+..+. .|.+||||+++++ .+.++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998774 3689999999997 4789999999999999999999999876678999999999
Q ss_pred CCCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
+.. +|++||++.+++.++..+...+.|++|.. ...|+|+++
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~--------~~~G~~~~~ 118 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED--------VKSGRLHLK 118 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECcC--------CCCceEEEE
Confidence 987 89999999999999987777899999953 357988876
No 23
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.82 E-value=1.4e-19 Score=147.94 Aligned_cols=109 Identities=35% Similarity=0.576 Sum_probs=98.2
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcC
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE 336 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d 336 (390)
...|.|.|+|++|++|+..+..|.+||||++++.+.+.+.++|++++++.||.|||+|.|.+... ....|.++|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 46789999999999999999889999999999976656788999999999999999999998643 3568999999999
Q ss_pred CCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (390)
Q Consensus 337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (390)
.++++++||++.++++++..+...+.|++|+
T Consensus 93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9989999999999999998777889999985
No 24
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.82 E-value=1.5e-19 Score=147.75 Aligned_cols=109 Identities=23% Similarity=0.444 Sum_probs=95.6
Q ss_pred cceeEEEEEEeeecCCccccCC-CCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIY 333 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~ 333 (390)
...+.|.|+|++|++|+.++.. |.+||||++++.+.+ ..+++|+++++++||.|||+|.|.+.. .....|.++||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 4567899999999999999875 889999999997654 346799999999999999999999864 34568999999
Q ss_pred EcCCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (390)
|++.++++++||++.++|.++..+.....|++|+
T Consensus 92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999999999999999999998777788999984
No 25
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.81 E-value=2e-19 Score=146.92 Aligned_cols=109 Identities=18% Similarity=0.354 Sum_probs=96.0
Q ss_pred cceeEEEEEEeeecCCccccC-CCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~ 333 (390)
...|.|.|+|++|++|+..+. .+.+||||++++.+.+ ..++||++++++.||.|||+|.|.+... ....|.|+||
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 567899999999999998765 4789999999997654 3467899999999999999999998653 4568999999
Q ss_pred EcCCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (390)
|++..+++++||++.+++.++......+.|++|+
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 9999999999999999999998888899999983
No 26
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=3.2e-19 Score=144.89 Aligned_cols=112 Identities=22% Similarity=0.435 Sum_probs=96.2
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (390)
|+|+|++|++|+.. .+||||+++++ .+..+|++++++.||.|||+|.|.+.++....|.++|||++.. ++++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~ 73 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDF 73 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCce
Confidence 78999999999876 78999999997 4678999999999999999999998876677999999999987 7899
Q ss_pred eEEEEEEccccCCC-----ceeeEEEEcccccccCCCCeeeeEEEEE-Ee
Q 016385 344 IGCAQVRLCELEPG-----KVKDVWLKLVKDLDVQRDTKYRGQVRIK-YP 387 (390)
Q Consensus 344 lG~~~v~l~~l~~~-----~~~~~w~~L~~~~~~~~~~~~~G~i~l~-y~ 387 (390)
||++.++++++..+ ...+.|++|.+.. +.+.+|+|+++ ++
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----~~~~~G~i~l~~~~ 119 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----GGRVGGELMLAVWF 119 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCCC----CCccceEEEEEEEe
Confidence 99999999998542 2356999997642 35688999998 44
No 27
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.81 E-value=5.2e-19 Score=150.26 Aligned_cols=120 Identities=28% Similarity=0.489 Sum_probs=101.0
Q ss_pred ceeEEEEEEeeecCCcccc------------------------------CCCCCCcEEEEEEecCCCceEeeeccCCCCC
Q 016385 260 PVGTLEVKLVQAKGLTNKD------------------------------LIGKSDPYAVLFVRPLPEKTKKSKTINNDLN 309 (390)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~n 309 (390)
-.|.|+|+|.+|++|+++| ..|.+||||+++++ +.+..+|++++++.|
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~~~~rT~v~~~~~n 82 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GARVARTRVIENSEN 82 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--CeEeeEEEEeCCCCC
Confidence 4699999999999999987 24668999999997 235679999999999
Q ss_pred CeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 310 PIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 310 P~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
|.|||+|.|.+.+. .+.|.|+|||+|..+ +++||++.++++++..+...+.|++|..... +..+..|+|+++
T Consensus 83 P~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~--~~~~~~~~l~v~ 154 (158)
T cd04015 83 PVWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNG--KPPKPGAKIRVS 154 (158)
T ss_pred CccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCC--CCCCCCCEEEEE
Confidence 99999999998765 468999999999875 6899999999999988888999999976421 234456899988
No 28
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.81 E-value=3.8e-19 Score=145.44 Aligned_cols=109 Identities=32% Similarity=0.535 Sum_probs=97.8
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcC
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE 336 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d 336 (390)
...|.|+|+|++|++|+..+..+.+||||++++.+...+.++|++++++.||.|||+|.|.+... ....|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 46789999999999999999889999999999986656688999999999999999999998643 3568999999999
Q ss_pred CCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (390)
Q Consensus 337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (390)
.++++++||++.++++++..+...++|++|.
T Consensus 93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9989999999999999998888889999984
No 29
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.80 E-value=6.1e-19 Score=144.14 Aligned_cols=120 Identities=28% Similarity=0.489 Sum_probs=100.3
Q ss_pred eeEEEEEEeeecCCcccc-CCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCC
Q 016385 261 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~ 339 (390)
.|.|+|+|.+|++|+..+ ..+.+||||++.+... .+.++|++++++.||.|||.|.|.+. ...+.|.++|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999755 3467899999999732 36789999999999999999999987 44679999999999988
Q ss_pred CCceeEEEEEEccccCCCceee-EEEEcccccccCCCCeeeeEEEEE--Eee
Q 016385 340 SSELIGCAQVRLCELEPGKVKD-VWLKLVKDLDVQRDTKYRGQVRIK--YPP 388 (390)
Q Consensus 340 ~d~~lG~~~v~l~~l~~~~~~~-~w~~L~~~~~~~~~~~~~G~i~l~--y~p 388 (390)
+|++||++.+++.++..+...+ .|..+. .+++..|+|+++ |.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh------cCCccceEEEEEEEeCC
Confidence 9999999999999998766554 344443 266778999999 887
No 30
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.80 E-value=3.4e-19 Score=142.67 Aligned_cols=103 Identities=26% Similarity=0.507 Sum_probs=90.0
Q ss_pred eEEEEEEeeecCCccccCC-CCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC---CCCEEEEEEEEcCC
Q 016385 262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG 337 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~---~~~~L~v~v~d~d~ 337 (390)
|+|+|+|++|++|+..+.. +.+||||++++.+.+...++|+++++++||.|||+|.|.+... ..+.|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999887 8999999999975555678999999999999999999987654 35689999999999
Q ss_pred CCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (390)
Q Consensus 338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (390)
.++|++||++.+++.++. ....|+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~---~~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELI---EDRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence 989999999999999987 345677763
No 31
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.79 E-value=1.1e-18 Score=143.24 Aligned_cols=109 Identities=21% Similarity=0.291 Sum_probs=93.7
Q ss_pred cceeEEEEEEeeecCCccccCC-CCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEE-Eec--CCCCEEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRIYD 334 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~-v~~--~~~~~L~v~v~d 334 (390)
...+.|+|+|++|++|+..+.. +.+||||++++.+...++.||++++++.||.|||+|.|. +.. .....|.++|||
T Consensus 13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d 92 (128)
T cd08388 13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLS 92 (128)
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence 4567999999999999998876 889999999998666667899999999999999999993 432 234579999999
Q ss_pred cCCCCCCceeEEEEEEccccCCC--ceeeEEEEcc
Q 016385 335 DEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLV 367 (390)
Q Consensus 335 ~d~~~~d~~lG~~~v~l~~l~~~--~~~~~w~~L~ 367 (390)
+|.+++|++||++.+++.++..+ .....|++|+
T Consensus 93 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 93 FDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred cCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 99999999999999999998544 6688999986
No 32
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.79 E-value=2.3e-18 Score=141.05 Aligned_cols=118 Identities=19% Similarity=0.309 Sum_probs=100.0
Q ss_pred ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCC
Q 016385 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (390)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~ 339 (390)
|.++|+|+|++|++|...+..|.+||||++.++ ++.++|++++++.||.|||.|.|.+.+. ...|.++|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC---CEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 467999999999999999888999999999986 5678999999999999999999988765 66899999999886
Q ss_pred CCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 340 SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 340 ~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
+|++||++.+++++... ....|++|.+... ..+++..|+|.++
T Consensus 76 ~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~-~~~~~~~G~i~~~ 118 (126)
T cd04046 76 CDEFLGQATLSADPNDS--QTLRTLPLRKRGR-DAAGEVPGTISVK 118 (126)
T ss_pred CCCceEEEEEecccCCC--cCceEEEcccCCC-CCCCCCCCEEEEE
Confidence 48999999999987643 3456778864322 3577889999998
No 33
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.79 E-value=2.3e-18 Score=139.69 Aligned_cols=115 Identities=32% Similarity=0.605 Sum_probs=99.3
Q ss_pred eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCC
Q 016385 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d 341 (390)
|.|+|+|++|++|+..+..+.+||||++++. ...++|++++++.||.|||+|.|.+.+. .+.+.++|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999986 4567999999999999999999998754 46899999999988889
Q ss_pred ceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
++||++.+++.++..+. ..|++|... ....+..|+|.++
T Consensus 77 ~~iG~~~~~l~~~~~~~--~~~~~l~~~---~~~~~~~G~i~l~ 115 (119)
T cd08377 77 EFLGKVAIPLLSIKNGE--RKWYALKDK---KLRTRAKGSILLE 115 (119)
T ss_pred ceeeEEEEEHHHCCCCC--ceEEECccc---CCCCceeeEEEEE
Confidence 99999999999987653 579998643 1244578999987
No 34
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=1.8e-18 Score=143.24 Aligned_cols=119 Identities=27% Similarity=0.472 Sum_probs=99.7
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCC----CceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~ 338 (390)
.|+|+|++|++|+..+..|.+||||++++.... ...++|++++++.||.|||+|.|.+... ...|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 378999999999999988999999999997431 1256899999999999999999998654 46899999999999
Q ss_pred CCCceeEEEEEEccccCCCc------eeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 339 QSSELIGCAQVRLCELEPGK------VKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 339 ~~d~~lG~~~v~l~~l~~~~------~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
+++++||++.++++++..+. ....|++|.+. .+.++..|+|+++
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~---~~~~~~~G~l~~~ 129 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR---SSKSRVKGHLRLY 129 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec---CCCCcceeEEEEE
Confidence 89999999999999986543 34699999753 2245679999998
No 35
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.79 E-value=9.7e-19 Score=146.37 Aligned_cols=106 Identities=24% Similarity=0.342 Sum_probs=90.2
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEe---------------cCCC
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE---------------DEST 325 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~---------------~~~~ 325 (390)
.|+|+|++|++|.. ..|.+||||++++.+.. .+.++|++++++.||.|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999987 46899999999997432 25678999999999999999999985 1233
Q ss_pred CEEEEEEEEcCCCCCCceeEEEEEEccccCCC-ceeeEEEEccccc
Q 016385 326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKLVKDL 370 (390)
Q Consensus 326 ~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~-~~~~~w~~L~~~~ 370 (390)
..|.++|||++..++|++||++.+++.++..+ ...+.||+|.+..
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 57999999999888999999999999999876 5678999998753
No 36
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.79 E-value=1.8e-18 Score=140.63 Aligned_cols=116 Identities=23% Similarity=0.498 Sum_probs=98.4
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (390)
|.|+|++|++|.+++..|.+||||+++++ +...++|++++++.||.|||.|.|.+.+. .+.+.+++||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999986 23457999999999999999999998644 4689999999999999999
Q ss_pred eEEEEEEccccCCC-ceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 344 IGCAQVRLCELEPG-KVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 344 lG~~~v~l~~l~~~-~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
||++.++++++..+ ...+.|++|.+. ..+....|+|++.
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~---~~~~~~~G~i~l~ 118 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV---DPDEEVQGEIHLE 118 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee---CCCCccccEEEEE
Confidence 99999999888653 346899999753 2245578999875
No 37
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.79 E-value=1e-18 Score=141.91 Aligned_cols=108 Identities=20% Similarity=0.339 Sum_probs=94.5
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC---ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~ 333 (390)
...+.|.|+|++|+||+..+..+.+||||++++.+++. ..++|++++++.||.|||+|.|.+... .+..|.++||
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~ 90 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVC 90 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence 56789999999999999988888999999999987663 478999999999999999999998643 5679999999
Q ss_pred EcCCCCCCceeEEEEEEccccCCC-ceeeEEEEc
Q 016385 334 DDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKL 366 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v~l~~l~~~-~~~~~w~~L 366 (390)
|++..+++++||++.++++++... .....|++|
T Consensus 91 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 91 SVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred eCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999999999999999999998444 456788875
No 38
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.78 E-value=3.2e-18 Score=139.64 Aligned_cols=117 Identities=26% Similarity=0.524 Sum_probs=98.3
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCC--C
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS--S 341 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~--d 341 (390)
|+|+|++|++|...+..+.+||||+++++ +.+.++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 78999999999999988999999999995 3567899999999999999999999965 6799999999998765 5
Q ss_pred ceeEEEEEEccccCCCc-eeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 342 ELIGCAQVRLCELEPGK-VKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 342 ~~lG~~~v~l~~l~~~~-~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
++||++.+++.++.... ....|++|.+.. ....+...|+|.++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~-~~~~~~~~G~v~~~ 121 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLK-KSDNLSVRGKIVVS 121 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecCC-CCCCceEeeEEEEE
Confidence 89999999999986543 447899996532 12456778998875
No 39
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.78 E-value=1.5e-18 Score=137.46 Aligned_cols=100 Identities=31% Similarity=0.408 Sum_probs=90.0
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 342 (390)
.|.|+|++|++|+..+..+.+||||+++++ ++.++|++++++.||.|||.|.|.+.++..+.|.++|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 378999999999998888999999999997 478899999999999999999999998777899999999886 78
Q ss_pred eeEEEEEEccccCCC--ceeeEEEEccc
Q 016385 343 LIGCAQVRLCELEPG--KVKDVWLKLVK 368 (390)
Q Consensus 343 ~lG~~~v~l~~l~~~--~~~~~w~~L~~ 368 (390)
+||++.+++.++..+ ...+.||+|.+
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecCC
Confidence 999999999998654 46789999964
No 40
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.78 E-value=2.2e-18 Score=141.13 Aligned_cols=109 Identities=26% Similarity=0.437 Sum_probs=96.8
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEec---CCCCEEEEEEEEc
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYDD 335 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~---~~~~~L~v~v~d~ 335 (390)
...+.|+|+|++|++|+..+..+.+||||++++.+.+.+..+|++++++.||.|||+|.|.+.. .....|.++|||+
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 4678999999999999999888999999999997655677899999999999999999997532 2456899999999
Q ss_pred CCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (390)
Q Consensus 336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (390)
+..+++++||++.+++.++..+...+.|+.|.
T Consensus 93 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 93 DRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 99889999999999999998888899999985
No 41
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.78 E-value=2.2e-18 Score=141.15 Aligned_cols=108 Identities=20% Similarity=0.434 Sum_probs=93.3
Q ss_pred cceeEEEEEEeeecCCccccCC-CCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~ 333 (390)
...+.|.|+|++|++|+.++.. |.+||||++++.+.. ..++||++++++.||.|||+|.|.+... ....|.+.||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 4568999999999999998865 899999999998655 3477999999999999999999998653 4569999999
Q ss_pred EcCCCCCCceeEEEEEEccccCC---CceeeEEEEc
Q 016385 334 DDEGIQSSELIGCAQVRLCELEP---GKVKDVWLKL 366 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v~l~~l~~---~~~~~~w~~L 366 (390)
|++.++++++||++.++|.++.. +.....||+|
T Consensus 92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred eCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 99999999999999999999844 3466799987
No 42
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.78 E-value=2.2e-18 Score=140.62 Aligned_cols=108 Identities=31% Similarity=0.433 Sum_probs=96.4
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEE-Eec--CCCCEEEEEEEEc
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRIYDD 335 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~-v~~--~~~~~L~v~v~d~ 335 (390)
...+.|.|+|++|++|+..+..+.+||||++.+.+...++++|+++++ .||.|||+|.|. +.. ..+..|.++|||+
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~ 91 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV 91 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence 466789999999999999988889999999998777677889999887 999999999998 543 2567899999999
Q ss_pred CCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (390)
Q Consensus 336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (390)
+.++++++||++.++|+++..+.....|++|+
T Consensus 92 ~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 92 ERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99999999999999999998888899999986
No 43
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.78 E-value=1.6e-18 Score=140.19 Aligned_cols=106 Identities=25% Similarity=0.471 Sum_probs=91.3
Q ss_pred ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC-CCCEEEEEEEEcC
Q 016385 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 336 (390)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~-~~~~L~v~v~d~d 336 (390)
..|.|.|+|++|++|+.++ .|.+||||++++.+... .++||++++++.||.|||+|.|.+... ....+.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4578999999999999988 78999999999986543 366899999999999999999998643 2347889999998
Q ss_pred CCC-CCceeEEEEEEccccCCCceeeEEEEc
Q 016385 337 GIQ-SSELIGCAQVRLCELEPGKVKDVWLKL 366 (390)
Q Consensus 337 ~~~-~d~~lG~~~v~l~~l~~~~~~~~w~~L 366 (390)
... ++++||++.+++.++..+...+.||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 865 478999999999999878778999976
No 44
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.78 E-value=4.9e-18 Score=140.87 Aligned_cols=118 Identities=22% Similarity=0.398 Sum_probs=97.8
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC---------CCCEEEEEEE
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------STQHLVVRIY 333 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~---------~~~~L~v~v~ 333 (390)
.|+|+|.+|++|+.+|..|.+||||+++++ .++++|++++++.||.|||.|.|.+... ....+.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999996 5678999999999999999999975432 1257999999
Q ss_pred EcCCCCCCceeEEEEE-EccccC---CCceeeEEEEcccccccCCCCeeeeEEEEE--Eeec
Q 016385 334 DDEGIQSSELIGCAQV-RLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPY 389 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v-~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~ 389 (390)
|+|..++|++||++.+ ++..+. .+.....|++|.+ .+...|+|.++ +.|.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec------CCCchhheeEEeEEEEe
Confidence 9999999999999986 443343 3467789999964 44578999998 7664
No 45
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=6.6e-18 Score=138.66 Aligned_cols=114 Identities=30% Similarity=0.476 Sum_probs=98.3
Q ss_pred EeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCCCCCCceeE
Q 016385 268 LVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQSSELIG 345 (390)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~~~~d~~lG 345 (390)
|++|++|+. ..|.+||||++++. ...++|++++++.||.|||+|.|.+.+. ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~---~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEEC---CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 678999988 67899999999996 5578999999999999999999999764 5679999999999988999999
Q ss_pred EEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--EeecC
Q 016385 346 CAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPYK 390 (390)
Q Consensus 346 ~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~~ 390 (390)
++.++++++..+.....|++|.... .....|+|+++ |.|.+
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~~----~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDSN----GRPTGATISLEVSYQPPD 119 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCCC----CCcccEEEEEEEEEeCCC
Confidence 9999999999888889999996421 33346899999 99864
No 46
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.77 E-value=4.1e-18 Score=139.86 Aligned_cols=109 Identities=26% Similarity=0.444 Sum_probs=95.6
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d 334 (390)
...+.|+|+|++|++|+..+..+.+||||++++.+.+ ..+++|++++++.||.|||+|.|.+... ....|.+.|||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 4568999999999999999988999999999997543 4578999999999999999999998543 45689999999
Q ss_pred cCCC--CCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385 335 DEGI--QSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (390)
Q Consensus 335 ~d~~--~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (390)
++.. +++++||++.+++.++..+...+.|++|.
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 9875 68999999999999998888889999883
No 47
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.77 E-value=3.8e-18 Score=139.27 Aligned_cols=108 Identities=20% Similarity=0.458 Sum_probs=94.5
Q ss_pred cceeEEEEEEeeecCCcccc-CCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~ 333 (390)
...|.|+|+|++|++|+..+ ..+.+||||++++.+.+. .+++|++++++.||.|||+|.|.+... ....|.++||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 46789999999999999988 678999999999865433 468999999999999999999998653 3568999999
Q ss_pred EcCCCCCCceeEEEEEEccccCCCceeeEEEEc
Q 016385 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L 366 (390)
|++..+++++||++.++++++..+...+.|++|
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999988999999999999999777778999986
No 48
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.77 E-value=6.9e-18 Score=137.73 Aligned_cols=109 Identities=25% Similarity=0.376 Sum_probs=96.8
Q ss_pred cceeEEEEEEeeecCCcccc-CCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEc
Q 016385 259 KPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD 335 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~ 335 (390)
...+.|.|+|++|++|+..+ ..+.+||||++++.+.+.+.++|++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 56789999999999999988 678899999999976556678999999999999999999998653 345899999999
Q ss_pred CCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (390)
Q Consensus 336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (390)
+..+++++||++.++++++......+.|++|.
T Consensus 91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99888999999999999998888889999985
No 49
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.77 E-value=9.9e-18 Score=138.53 Aligned_cols=111 Identities=25% Similarity=0.476 Sum_probs=96.0
Q ss_pred eeEEEEEEeeecCCccccCC----------CCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEE
Q 016385 261 VGTLEVKLVQAKGLTNKDLI----------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV 330 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v 330 (390)
.|.|+|+|++|++|...+.. +.+||||++.++ +.+..+|++++++.||.|||+|.|.+. ....+.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 58999999999999988752 578999999997 334578999999999999999999996 3468999
Q ss_pred EEEEcCCCCCCceeEEEEEEccccCC--CceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 331 RIYDDEGIQSSELIGCAQVRLCELEP--GKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 331 ~v~d~d~~~~d~~lG~~~v~l~~l~~--~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
.|||++..++++++|++.++++++.. +...+.|++|. ..|+|++.
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~l~l~ 125 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE----------PQGKLHVK 125 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc----------CCcEEEEE
Confidence 99999988889999999999999876 56789999994 35888887
No 50
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.76 E-value=4.5e-18 Score=135.10 Aligned_cols=94 Identities=15% Similarity=0.294 Sum_probs=82.1
Q ss_pred eEEEEEEeeecCCccccCC----CCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC-CCCEEEEEEEEcC
Q 016385 262 GTLEVKLVQAKGLTNKDLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 336 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~----g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~-~~~~L~v~v~d~d 336 (390)
|+|.|+|++|++|+..+.. +.+||||+++++ .+++||+++++++||.|||.|.|.+.+. ....|.++|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~---~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG---RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC---CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987642 358999999986 5678999999999999999999998754 3458999999999
Q ss_pred CCCCCceeEEEEEEccccCCCc
Q 016385 337 GIQSSELIGCAQVRLCELEPGK 358 (390)
Q Consensus 337 ~~~~d~~lG~~~v~l~~l~~~~ 358 (390)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999986653
No 51
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=5.9e-18 Score=138.52 Aligned_cols=108 Identities=24% Similarity=0.439 Sum_probs=91.3
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC---CCCEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIY 333 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~---~~~~L~v~v~ 333 (390)
...|.|+|+|++|++|...+..+.+||||++++.+.+ ..+++|++++++.||.|||+|.|.+... ....|.++||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 4568999999999999999888999999999997533 3577899999999999999999986432 4568999999
Q ss_pred EcCCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (390)
|++..+++++||++.+++++. .......|++|+
T Consensus 93 d~~~~~~~~~iG~~~i~l~~~-~~~~~~~W~~L~ 125 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLADA-LLDDEPHWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeeEEEEecccc-cccCCcceEECc
Confidence 999988999999999999983 233457899984
No 52
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.76 E-value=1.3e-17 Score=136.78 Aligned_cols=105 Identities=28% Similarity=0.487 Sum_probs=91.3
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 342 (390)
.++|+|++|++|+..+..+.+||||++.....+.+.++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 57899999999999988899999999987643345789999999999999999999998765679999999999988899
Q ss_pred eeEEEEEEccccCC---CceeeEEEEcc
Q 016385 343 LIGCAQVRLCELEP---GKVKDVWLKLV 367 (390)
Q Consensus 343 ~lG~~~v~l~~l~~---~~~~~~w~~L~ 367 (390)
+||++.+++.++.. +...+.|++|.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~ 109 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD 109 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC
Confidence 99999999987632 45678999995
No 53
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.76 E-value=1.8e-17 Score=135.92 Aligned_cols=114 Identities=32% Similarity=0.648 Sum_probs=96.2
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC----
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI---- 338 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~---- 338 (390)
.|+|+|++|++|+..|..|.+||||+++++ ...++|++++++.||.|||+|.|.+..+ ...|.++|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 689999999999999988999999999986 4578999999999999999999988655 45899999999852
Q ss_pred -------CCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 339 -------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 339 -------~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
+++++||++.+++.++.. ..+.|+.|.+.. .....+|+|+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~---~~~~~~G~i~~~ 126 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRT---DKSAVSGAIRLH 126 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccC--CCCeEEECccCC---CCCcEeEEEEEE
Confidence 468999999999988753 357999998642 244579999885
No 54
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.76 E-value=7.2e-18 Score=141.54 Aligned_cols=103 Identities=39% Similarity=0.712 Sum_probs=90.9
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--------------------------CceEeeeccCCCCCCee
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--------------------------EKTKKSKTINNDLNPIW 312 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--------------------------~~~~kT~v~~~~~nP~w 312 (390)
++.+.|.|+|++|++|..+|..|.+||||++++.+.. .+.++|+++++++||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 6899999999999999999999999999999986421 13478999999999999
Q ss_pred eeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCCCceeeEEEEc
Q 016385 313 NEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (390)
Q Consensus 313 ~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L 366 (390)
||+|.|.+.+...+.|.|+|||++ +++||++.++++++. +...+.|++|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 999999998766789999999997 889999999999998 3457999986
No 55
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.75 E-value=5.7e-18 Score=135.34 Aligned_cols=101 Identities=27% Similarity=0.472 Sum_probs=89.1
Q ss_pred EEEEEeeecCCccccC-CCCCCcEEEEEEecCCCceEeeeccCCCCCCee-eeEEEEEEecC--CCCEEEEEEEEcCCCC
Q 016385 264 LEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIW-NEHFEFIVEDE--STQHLVVRIYDDEGIQ 339 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w-~e~f~f~v~~~--~~~~L~v~v~d~d~~~ 339 (390)
|.|+|++|++|+.++. .+.+||||+++++ .++++|+++++++||.| ||+|.|.+... .++.|.++|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 5799999999998874 6889999999997 47889999999999999 99999998764 3468999999999999
Q ss_pred CCceeEEEEEEccccCC---CceeeEEEEcc
Q 016385 340 SSELIGCAQVRLCELEP---GKVKDVWLKLV 367 (390)
Q Consensus 340 ~d~~lG~~~v~l~~l~~---~~~~~~w~~L~ 367 (390)
+|++||++.+++.++.. +...+.||+|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 99999999999999866 34578999985
No 56
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.75 E-value=7.4e-18 Score=137.96 Aligned_cols=115 Identities=27% Similarity=0.482 Sum_probs=97.9
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccC-CCCCCeeeeEEEEEEecCC----CCEEEEEEEEcCC
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEG 337 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~~~nP~w~e~f~f~v~~~~----~~~L~v~v~d~d~ 337 (390)
.|+|+|++|++|+..+..+.+||||++++.+ .+.++|++.. ++.||.|||.|.|.+.+.. ...|.++|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 3789999999999988889999999999973 3567888874 6899999999999997763 5789999999998
Q ss_pred CCCCceeEEEEEEccccCCCce-----eeEEEEcccccccCCCCeeeeEEEE
Q 016385 338 IQSSELIGCAQVRLCELEPGKV-----KDVWLKLVKDLDVQRDTKYRGQVRI 384 (390)
Q Consensus 338 ~~~d~~lG~~~v~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~G~i~l 384 (390)
+++|++||++.+++.++..+.. ...|++|.+. +++..|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-----~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-----SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-----CCCcCeEEeC
Confidence 8889999999999999875543 4789999753 5788899875
No 57
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.75 E-value=1.9e-17 Score=133.48 Aligned_cols=113 Identities=35% Similarity=0.548 Sum_probs=98.4
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (390)
|+|+|++|++|+..+..+.+||||++++. +.+.++|+++.++.||.|||+|.|.+.+...+.+.+++||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57899999999998888899999999986 2456899999999999999999999987667799999999999889999
Q ss_pred eEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEE
Q 016385 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVR 383 (390)
Q Consensus 344 lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~ 383 (390)
||++.+++.++..+...+.|++|.+. ++...|.+.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~-----g~~~~~~~~ 113 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDGQ-----GGGKLGAVF 113 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcCC-----CCccCceEE
Confidence 99999999999888888999999753 445566654
No 58
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.75 E-value=1.4e-17 Score=136.12 Aligned_cols=104 Identities=39% Similarity=0.638 Sum_probs=93.2
Q ss_pred eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCC-CCCCeeeeEEEEEEecC---CCCEEEEEEEEcCC
Q 016385 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG 337 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-~~nP~w~e~f~f~v~~~---~~~~L~v~v~d~d~ 337 (390)
|.|.|+|++|++|+..+..+.+||||++++. .+.++|++.++ +.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999998888999999999986 45678888774 89999999999999876 35689999999999
Q ss_pred CCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
.++|++||++.+++.++..+...+.|+.|.+
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8899999999999999988778899999976
No 59
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.74 E-value=2.3e-17 Score=136.87 Aligned_cols=108 Identities=21% Similarity=0.359 Sum_probs=93.8
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEec-CCCceEeeeccCCCCCCeeeeEEEEEEecC---------------CCCE
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQH 327 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~---------------~~~~ 327 (390)
|+|+|++|++|..+ ..+.+|||+++++.. ...+.++|++++++.||.|||+|.|.+... ..+.
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 778999999999973 224678999999999999999999998765 4678
Q ss_pred EEEEEEEcCCCCCCceeEEEEEEccccCCCceeeEEEEccccccc
Q 016385 328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV 372 (390)
Q Consensus 328 L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~ 372 (390)
+.++|||++..+++++||++.+++.++......+.|++|.+....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~~ 124 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREAP 124 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCCC
Confidence 999999999988899999999999998877778999999875433
No 60
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.73 E-value=2.1e-17 Score=140.87 Aligned_cols=110 Identities=21% Similarity=0.373 Sum_probs=94.8
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEec---CCCCEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY 333 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~---~~~~~L~v~v~ 333 (390)
.+.|.|.|+|++|++|+..+..+.+||||++++.+.+ ..+++|++++++.||.|||+|.|.+.. .....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 5789999999999999999988999999999986432 457899999999999999999998532 23458999999
Q ss_pred EcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
|++.+++|++||++.+++.++......+.|+.+..
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 99999899999999999999876666788888854
No 61
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=3.6e-17 Score=131.38 Aligned_cols=99 Identities=22% Similarity=0.371 Sum_probs=84.6
Q ss_pred eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCC
Q 016385 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d 341 (390)
|.|.|+|++|++|...+ ..||||++.++ .++.+|++.++ .||.|||+|.|.+.+... .|.++|||++.. .|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g---~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~-~D 72 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQ---NVKSTTIAVRG-SQPCWEQDFMFEINRLDL-GLVIELWNKGLI-WD 72 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEEC---CEEeEeeECCC-CCCceeeEEEEEEcCCCC-EEEEEEEeCCCc-CC
Confidence 68999999999997544 46899999997 56788998877 599999999999987644 599999999965 89
Q ss_pred ceeEEEEEEccccCCCcee--eEEEEcccc
Q 016385 342 ELIGCAQVRLCELEPGKVK--DVWLKLVKD 369 (390)
Q Consensus 342 ~~lG~~~v~l~~l~~~~~~--~~w~~L~~~ 369 (390)
|++|++.++|+++..+... .+|++|.+.
T Consensus 73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred CceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 9999999999998765544 799999864
No 62
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.73 E-value=8e-18 Score=139.08 Aligned_cols=108 Identities=21% Similarity=0.302 Sum_probs=92.2
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCc--eEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD 334 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~d 334 (390)
+..+.|.|+|++|++|+..+..|.+||||++++.+.+.+ ++||+++++++||.|||+|.|.+.. ..+..|.|+|||
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~ 91 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE 91 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence 456789999999999999988899999999999765443 6689999999999999999999865 356789999999
Q ss_pred cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
+|..+++++||++.+... ..|...++|..+..
T Consensus 92 ~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~ 123 (136)
T cd08406 92 STEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLA 123 (136)
T ss_pred CCCCCCCCeeEEEEECCC--CCChhHHHHHHHHH
Confidence 999999999999999765 35666778877764
No 63
>PLN03008 Phospholipase D delta
Probab=99.72 E-value=5.5e-17 Score=164.43 Aligned_cols=126 Identities=23% Similarity=0.514 Sum_probs=106.7
Q ss_pred cceeEEEEEEeeecCCccccC------------------------------------------CCCCCcEEEEEEecCCC
Q 016385 259 KPVGTLEVKLVQAKGLTNKDL------------------------------------------IGKSDPYAVLFVRPLPE 296 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~ 296 (390)
.-.|.|.++|.+|++|+++|. .+++||||++.++ +.
T Consensus 11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg--~~ 88 (868)
T PLN03008 11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QA 88 (868)
T ss_pred EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC--Cc
Confidence 356889999999998875331 2467999999996 34
Q ss_pred ceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCC
Q 016385 297 KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT 376 (390)
Q Consensus 297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~ 376 (390)
++.||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.+|++++..|...+.|++|.+... +..
T Consensus 89 rv~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~--kp~ 164 (868)
T PLN03008 89 TLARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG--KPP 164 (868)
T ss_pred ceeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC--CCC
Confidence 5779999999999999999999998874 48999999999986 6899999999999999999999999987543 355
Q ss_pred eeeeEEEEE--EeecC
Q 016385 377 KYRGQVRIK--YPPYK 390 (390)
Q Consensus 377 ~~~G~i~l~--y~p~~ 390 (390)
+.+|+|+++ |+|++
T Consensus 165 k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 165 KAETAIFIDMKFTPFD 180 (868)
T ss_pred CCCcEEEEEEEEEEcc
Confidence 667899999 99985
No 64
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=7.4e-17 Score=130.79 Aligned_cols=103 Identities=25% Similarity=0.425 Sum_probs=91.5
Q ss_pred eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCC
Q 016385 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d 341 (390)
|.|+|+|++|++|+..+..+.+||||+++++ +...++|++++++.||.|||+|.|.+.+. .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999888999999999986 23568899999999999999999988765 46999999999999999
Q ss_pred ceeEEEEEEccccCCCceeeEEEEccc
Q 016385 342 ELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
++||++.+++.++..+ ..+.||.+..
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999876 5678888865
No 65
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.72 E-value=2.7e-16 Score=129.82 Aligned_cols=117 Identities=20% Similarity=0.372 Sum_probs=95.8
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCC----------CceEeeeccCCCCCCee-eeEEEEEEecCCCCEEEEE
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----------EKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR 331 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----------~~~~kT~v~~~~~nP~w-~e~f~f~v~~~~~~~L~v~ 331 (390)
+..|++++|++|+ ++..|++|||+++++.+.+ .+.++|+++++++||.| ||+|.|.+. .++.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4678999999998 7778999999999997543 24789999999999999 999999985 34689999
Q ss_pred EEEcCCCCC---CceeEEEEEEccccCCC---ceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 332 IYDDEGIQS---SELIGCAQVRLCELEPG---KVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 332 v~d~d~~~~---d~~lG~~~v~l~~l~~~---~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
|||++..++ +++||++.+++.++..+ .....|++|.+.. ..+..+|+|.+.
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~---~~s~v~G~~~l~ 135 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT---PTDHVSGQLTFR 135 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC---CCCcEEEEEEEE
Confidence 999875443 79999999999998654 3467899998643 256778999875
No 66
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.72 E-value=1.1e-17 Score=138.12 Aligned_cols=108 Identities=20% Similarity=0.383 Sum_probs=91.6
Q ss_pred cceeEEEEEEeeecCCccccC--CCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v 332 (390)
+..|.|.|+|++|+||...|. .+.+||||++++.+.+. .++||+++++++||+|||.|.|.+.+. .+..|.++|
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEE
Confidence 567899999999999999873 35599999999986543 367899999999999999999998753 456899999
Q ss_pred EEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 333 ~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
||+|.++++++||++.+++.. .|+..++|..+..
T Consensus 92 ~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 92 LNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 999999999999999999974 5667788877754
No 67
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.72 E-value=2.1e-16 Score=132.51 Aligned_cols=116 Identities=25% Similarity=0.378 Sum_probs=90.9
Q ss_pred EEEEeeecC--CccccCCCCCCcEEEEEEe-c-CCCceEeeeccCCCCCCeeeeEEEEEEecC--------CCCEEEEEE
Q 016385 265 EVKLVQAKG--LTNKDLIGKSDPYAVLFVR-P-LPEKTKKSKTINNDLNPIWNEHFEFIVEDE--------STQHLVVRI 332 (390)
Q Consensus 265 ~V~v~~a~~--L~~~d~~g~~dpyv~v~~~-~-~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~--------~~~~L~v~v 332 (390)
.++|..|++ ++..+..+.+||||++++. + .+.++.||+++++|+||.|||+|.|.+... ..+.|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 345555555 7777777889999999973 2 345689999999999999999999999643 245799999
Q ss_pred EEcCCC-CCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 333 YDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 333 ~d~d~~-~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
||++.+ ++|++||++.++|+.+........|++|... .....|+|+++
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-----~k~~Gg~l~v~ 133 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-----RKATGGKLEVK 133 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-----CCCcCCEEEEE
Confidence 999986 5799999999999999877777789998742 22344666665
No 68
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.71 E-value=2.3e-17 Score=136.53 Aligned_cols=108 Identities=25% Similarity=0.453 Sum_probs=93.3
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d 334 (390)
...|.|.|+|++|++|+..|..|.+||||++++.+.. ..+++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 4678999999999999999988999999999997543 3467999999999999999999998653 45689999999
Q ss_pred cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
++..+++++||++.+++.. .++..++|+++..
T Consensus 90 ~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred CCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 9998889999999999975 4556789998865
No 69
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.71 E-value=3.2e-17 Score=136.17 Aligned_cols=108 Identities=23% Similarity=0.377 Sum_probs=92.2
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d 334 (390)
...+.|.|+|++|++|+..|..|.+||||++++.+.+. ...+|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 45778999999999999999889999999999864432 357899999999999999999998643 34578999999
Q ss_pred cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
++.++++++||++.+++.. .+...++|+++..
T Consensus 92 ~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 92 SDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 9999999999999999987 4566788988854
No 70
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.71 E-value=9.8e-17 Score=130.58 Aligned_cols=94 Identities=26% Similarity=0.416 Sum_probs=82.4
Q ss_pred ccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEec-CCCCEEEEEEEEcC
Q 016385 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVVRIYDDE 336 (390)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~-~~~~~L~v~v~d~d 336 (390)
.+..|.|+|+|++|++|+. +..+.+|||++++++ +++++|++++++.||.|||+|.|.... ...+.|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 3678999999999999984 667889999999986 458899999999999999999997533 35679999999999
Q ss_pred CCCCCceeEEEEEEccccC
Q 016385 337 GIQSSELIGCAQVRLCELE 355 (390)
Q Consensus 337 ~~~~d~~lG~~~v~l~~l~ 355 (390)
..++|++||++.+++....
T Consensus 100 ~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 100 NGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCeeEEEEEEecCCc
Confidence 9999999999999998554
No 71
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.70 E-value=1.2e-16 Score=133.43 Aligned_cols=91 Identities=30% Similarity=0.600 Sum_probs=83.4
Q ss_pred eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCC
Q 016385 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~ 340 (390)
.|.|+|+|++|++|+..+. +.+||||+++++ .+.++|++++++.||.|||+|.|.+.++ .+.+.++|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g---~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG---NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEEC---CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999998887 889999999996 6789999999999999999999999877 6799999999999999
Q ss_pred CceeEEEEEEccccCC
Q 016385 341 SELIGCAQVRLCELEP 356 (390)
Q Consensus 341 d~~lG~~~v~l~~l~~ 356 (390)
|++||++.+++.++..
T Consensus 76 dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 76 DDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCEEEEEEEEHHHhhh
Confidence 9999999999988743
No 72
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.70 E-value=3.7e-16 Score=129.65 Aligned_cols=124 Identities=20% Similarity=0.359 Sum_probs=99.1
Q ss_pred ccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCC
Q 016385 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337 (390)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~ 337 (390)
.+....|.|.|++|++|+.++ +|||.+.++ +....||+++.++.||.|+|.|+|..... -..+.|.||+.+.
T Consensus 7 ~R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~ 78 (146)
T cd04013 7 RRTENSLKLWIIEAKGLPPKK-----RYYCELCLD--KTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESD 78 (146)
T ss_pred eEEEEEEEEEEEEccCCCCcC-----CceEEEEEC--CEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccC
Confidence 356778999999999998754 799999997 34567999999999999999999976554 3579999987653
Q ss_pred C----CCCceeEEEEEEccccCCCceeeEEEEcccccccC-----CCCeeeeEEEEE--Eeec
Q 016385 338 I----QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ-----RDTKYRGQVRIK--YPPY 389 (390)
Q Consensus 338 ~----~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~-----~~~~~~G~i~l~--y~p~ 389 (390)
. .++++||.+.++++++..+...+.||+|....... ......|+|+++ |.+.
T Consensus 79 ~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 79 KKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 2 25789999999999999999999999998743221 012344789998 9875
No 73
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=1.1e-16 Score=128.02 Aligned_cols=100 Identities=26% Similarity=0.498 Sum_probs=85.3
Q ss_pred CCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCC-C
Q 016385 279 LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-G 357 (390)
Q Consensus 279 ~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~-~ 357 (390)
.+|.+||||+++++ +...++|++++++.||.|||.|.|.+.+...+.|.|+|||++.. ++++||++.++|+++.. +
T Consensus 9 ~~G~~dPYv~v~v~--~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEEC--CEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999996 23467999999999999999999999877677899999999998 89999999999999854 4
Q ss_pred ceeeEEEEcccccccCCCCeeeeEEEEE--Eeec
Q 016385 358 KVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPY 389 (390)
Q Consensus 358 ~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~ 389 (390)
...+.|++|.. ...|+|+++ |.|.
T Consensus 86 ~~~~~w~~L~~--------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLSG--------NGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECCC--------CCCCEEEEEEEEecC
Confidence 45689999952 457999999 9884
No 74
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=2e-16 Score=132.62 Aligned_cols=103 Identities=20% Similarity=0.287 Sum_probs=86.6
Q ss_pred EEEEEEeeecCCccccCCC--------------CCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC-CCCE
Q 016385 263 TLEVKLVQAKGLTNKDLIG--------------KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQH 327 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~-~~~~ 327 (390)
.|.|+|++|++|+.+|..+ .+||||++.++ ++..+|++++++.||.|||+|.|.+..+ ..+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 68999999997 4567999999999999999999997644 3569
Q ss_pred EEEEEEEcCCCCCCceeEEEEEEccccCCCce-------eeEEEEccc
Q 016385 328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKV-------KDVWLKLVK 368 (390)
Q Consensus 328 L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~-------~~~w~~L~~ 368 (390)
+.++|||+|..++|++||++.+++.++..... ...|+.+..
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 99999999999899999999999998865432 257877754
No 75
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=1.2e-16 Score=130.47 Aligned_cols=92 Identities=28% Similarity=0.398 Sum_probs=81.0
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 342 (390)
+|+|.|++|++|++.|..|.+||||+++++.. ....+|++++++.||.|||+|.|.+..+..+.|.++|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 47899999999999998899999999999732 23467888889999999999999987777789999999999998999
Q ss_pred eeEEEEEEccccC
Q 016385 343 LIGCAQVRLCELE 355 (390)
Q Consensus 343 ~lG~~~v~l~~l~ 355 (390)
+||++.+++++..
T Consensus 80 ~iG~~~i~l~~~~ 92 (124)
T cd04037 80 LIGETVIDLEDRF 92 (124)
T ss_pred eeEEEEEeecccc
Confidence 9999999998754
No 76
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.69 E-value=2.3e-16 Score=126.27 Aligned_cols=98 Identities=22% Similarity=0.396 Sum_probs=85.2
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCC----CCEEEEEEEEcCCC
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEGI 338 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~----~~~L~v~v~d~d~~ 338 (390)
.|+|+|++|++|. .+.+||||+++++ +++++|++++++.||.|||+|.|.+..+. +..|.++|||++..
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 6899999999998 4789999999998 56788999999999999999999986542 46899999999998
Q ss_pred CCCceeEEEEEEccccCCC---ceeeEEEEcc
Q 016385 339 QSSELIGCAQVRLCELEPG---KVKDVWLKLV 367 (390)
Q Consensus 339 ~~d~~lG~~~v~l~~l~~~---~~~~~w~~L~ 367 (390)
++|++||++.++++++..+ .....|++|.
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 8899999999999998655 3457899985
No 77
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.68 E-value=7e-17 Score=133.82 Aligned_cols=108 Identities=29% Similarity=0.480 Sum_probs=91.2
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d 334 (390)
...|.|+|+|++|++|++.+..|.+||||++++.+.+ ...++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 5678999999999999999989999999999986433 2467899999999999999999987543 33579999999
Q ss_pred cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
++..+++++||++.+++. ..+...++|+++..
T Consensus 91 ~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~ 122 (134)
T cd08403 91 YDRVGHNELIGVCRVGPN--ADGQGREHWNEMLA 122 (134)
T ss_pred CCCCCCCceeEEEEECCC--CCCchHHHHHHHHH
Confidence 999999999999999986 44555678888764
No 78
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.68 E-value=3.4e-16 Score=129.43 Aligned_cols=98 Identities=27% Similarity=0.380 Sum_probs=85.9
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC----CceEeeeccCCCCCCeeeeEEEEEEecC----CCCEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVV 330 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~~~nP~w~e~f~f~v~~~----~~~~L~v 330 (390)
...+.|+|+|++|++|+..+..+.+||||++++.+.. ...++|+++++++||.|||+|.|.+... ....|.+
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 4567899999999999998888999999999987433 3578999999999999999999998653 3568999
Q ss_pred EEEEcCCCCCCceeEEEEEEccccCC
Q 016385 331 RIYDDEGIQSSELIGCAQVRLCELEP 356 (390)
Q Consensus 331 ~v~d~d~~~~d~~lG~~~v~l~~l~~ 356 (390)
+|||++..++|++||++.++++++..
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 99999999889999999999999864
No 79
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.9e-16 Score=153.03 Aligned_cols=129 Identities=27% Similarity=0.426 Sum_probs=111.4
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEEEcC
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYDDE 336 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~d~d 336 (390)
.....|.|+|++|++|+.+|..|.+||||++++.++...+.+|++.++++||.|||+|.|.+.. ...+.|.+.|||+|
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 5677899999999999999966789999999999888889999999999999999999999654 36789999999999
Q ss_pred CCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--Eeec
Q 016385 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPY 389 (390)
Q Consensus 337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~ 389 (390)
.+++|+++|++.++|.++........|.++....... ....|+|.++ |.|.
T Consensus 244 rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~--~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS--EELAGELLLSLCYLPT 296 (421)
T ss_pred CcccccEEEEEEecCccccccccceeeeccccccCCc--ccccceEEEEEEeecC
Confidence 9999999999999999887777788999998753222 2222899998 9885
No 80
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.68 E-value=3.2e-16 Score=130.15 Aligned_cols=108 Identities=23% Similarity=0.420 Sum_probs=91.4
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD 334 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~d 334 (390)
...|.|.|+|++|++|+..+..|.+||||++++.+.+ ...++|++++++.||.|||+|.|.+.. .....|.|+|||
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 4678999999999999998888999999999985432 346789999999999999999998753 245689999999
Q ss_pred cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
++..+++++||++.+++.+. +...++|+++..
T Consensus 92 ~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 92 KDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred CCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 99999999999999999875 555678877764
No 81
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.68 E-value=6e-16 Score=128.45 Aligned_cols=109 Identities=19% Similarity=0.323 Sum_probs=91.5
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC---ceEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIY 333 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~ 333 (390)
...|.|.|+|++|+||+..+..|.+||||++++.+..+ .++||++++++.||.|||+|.|.+.. ..+..|.|+||
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~ 91 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVY 91 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence 56789999999999999999889999999999976433 25689999999999999999999874 35669999999
Q ss_pred EcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
|++..+++++||++.+++.... ....++|..+..
T Consensus 92 ~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~ 125 (138)
T cd08408 92 NKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKE 125 (138)
T ss_pred ECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHh
Confidence 9999999999999999886432 124568888754
No 82
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.68 E-value=3.9e-16 Score=128.83 Aligned_cols=106 Identities=34% Similarity=0.570 Sum_probs=93.0
Q ss_pred eEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC-CCCEEEEEEEEcCCC
Q 016385 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDEGI 338 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~-~~~~L~v~v~d~d~~ 338 (390)
|.|+|+|++|++|+..+..+.+||||.+.+.+.+ ...++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 8899999999999998888899999999997432 3578999999999999999999998654 356899999999988
Q ss_pred CCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 339 QSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 339 ~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
+++++||++.+++.++... ..+.|++|..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8899999999999998754 6789999965
No 83
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.68 E-value=3.2e-16 Score=127.24 Aligned_cols=101 Identities=26% Similarity=0.428 Sum_probs=87.8
Q ss_pred EeeecCCccccCCCCCCcEEEEEEecCC----CceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCC----CC
Q 016385 268 LVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG----IQ 339 (390)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~----~~ 339 (390)
.++|++|++.+..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+.....+.|.++|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 3789999999988999999999997543 135899999999999999999998765556789999999997 78
Q ss_pred CCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 340 SSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 340 ~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
+|++||++.+++.++..+.....|++|..
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 99999999999999988877888999843
No 84
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.68 E-value=9.1e-17 Score=133.49 Aligned_cols=108 Identities=31% Similarity=0.465 Sum_probs=91.6
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d 334 (390)
+..|.|.|+|++|++|+..+..|.+||||++++.+.+. ..++|++++++.||.|||+|.|.+... ....|.++|||
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 56789999999999999999889999999999864332 467899999999999999999998643 23479999999
Q ss_pred cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
++.+++|++||++.+++.. .+...++|+++..
T Consensus 92 ~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~ 123 (136)
T cd08402 92 YDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLA 123 (136)
T ss_pred CCCCCCCceeEEEEECCcc--CChHHHHHHHHHh
Confidence 9999999999999999975 3556678888765
No 85
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.67 E-value=1e-16 Score=133.11 Aligned_cols=109 Identities=24% Similarity=0.410 Sum_probs=92.9
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD 334 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~d 334 (390)
...+.|.|+|++|++|...+ .+.+||||++++.+.+. .+++|++++++.||.|||+|.|.+.. .....|.++|||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~ 90 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ 90 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence 45688999999999999888 78899999999875433 36789999999999999999999863 345689999999
Q ss_pred cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
++..+++++||++.++......+...++|..+..
T Consensus 91 ~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 91 SGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred CCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 9998999999999999766666777788888765
No 86
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.67 E-value=2.8e-16 Score=128.10 Aligned_cols=110 Identities=10% Similarity=0.230 Sum_probs=89.3
Q ss_pred ccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCC-CCeeeeEEEEEEecCC-CCEEEEEEE
Q 016385 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDL-NPIWNEHFEFIVEDES-TQHLVVRIY 333 (390)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~-nP~w~e~f~f~v~~~~-~~~L~v~v~ 333 (390)
.+..|+|+|+|++|++|++.+..+.+||||++++...++ .++||++++++. ||.|||+|.|.+.... +-.|.++||
T Consensus 10 ~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEE
Confidence 367889999999999999876566779999999875443 377899999995 6999999999997542 346788999
Q ss_pred EcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
|++..+++++||++.++.++. .+...++|.++..
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~ 123 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIA 123 (135)
T ss_pred eCCCCcCCceEEEEEECCccC-CchhhhhHHHHHh
Confidence 999888999999999999763 3445688977754
No 87
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.67 E-value=1.6e-15 Score=123.91 Aligned_cols=116 Identities=24% Similarity=0.426 Sum_probs=93.0
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCc
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 342 (390)
.|.|++.+|+ |...+..+.+||||+++++. ...++|++++++.||.|||+|.|.+. ..+.|.++|||++..++|+
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~--~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~~~~~ 77 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDG--QPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHTLKADV 77 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECC--cccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCCCCCCc
Confidence 6899999998 55555578899999999962 24789999999999999999999985 3568999999999998999
Q ss_pred eeEEEEEEccccCCC---ce--eeEEEEcccccccCCCCeeeeEEEEE
Q 016385 343 LIGCAQVRLCELEPG---KV--KDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 343 ~lG~~~v~l~~l~~~---~~--~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
+||++.+++.++... .. ...|+++.+.. ..++...|+|+++
T Consensus 78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~~~~ 123 (125)
T cd04021 78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSEN--KGSSVKVGELTVI 123 (125)
T ss_pred EEEEEEEEHHHhHhhcCCCccceEEEEEEEccC--CCcceeeeeEEEE
Confidence 999999999998543 22 23588887532 1145778999875
No 88
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.66 E-value=9.9e-16 Score=126.95 Aligned_cols=109 Identities=26% Similarity=0.442 Sum_probs=88.4
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d 334 (390)
...|.|+|+|++|++|+..|..|.+||||++++.+.+ .++++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 4568999999999999999988999999999985432 2467899999999999999999998543 34479999999
Q ss_pred cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
++..+++++||++.+...... +...++|..|..
T Consensus 91 ~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~ 123 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLN 123 (135)
T ss_pred CCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHh
Confidence 999999999999886653322 223578888765
No 89
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.65 E-value=1.6e-15 Score=123.79 Aligned_cols=107 Identities=25% Similarity=0.428 Sum_probs=90.5
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEec---CCCCEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY 333 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~---~~~~~L~v~v~ 333 (390)
...+.|+|+|++|++|++.+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.... .....+.+++|
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 4567899999999999998888899999999986432 357899999999999999999986322 23568999999
Q ss_pred EcCCCCCCceeEEEEEEccccCCCceeeEEEEc
Q 016385 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L 366 (390)
|++.. ++++||++.++++++..++.++.|+.|
T Consensus 92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred EcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 99988 899999999999999988888777653
No 90
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.64 E-value=3.6e-16 Score=129.51 Aligned_cols=107 Identities=28% Similarity=0.438 Sum_probs=93.3
Q ss_pred ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecCC--CCEEEEEEEEc
Q 016385 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYDD 335 (390)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~~--~~~L~v~v~d~ 335 (390)
..|.|.|+|++|++|+..+..+.+||||++++.+.+. ..++|++++++.||.|||+|.|.+.... ...|.|+|||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 4579999999999999988888999999999975432 3678999999999999999999987542 57899999999
Q ss_pred CCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
+..+++++||++.+++++ .+...++|++|..
T Consensus 92 ~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 92 DSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred CCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 988889999999999998 5667889999875
No 91
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.64 E-value=3.9e-15 Score=120.22 Aligned_cols=111 Identities=31% Similarity=0.528 Sum_probs=86.4
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCC--CCEEEEEEEEcCCCCCC
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYDDEGIQSS 341 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~--~~~L~v~v~d~d~~~~d 341 (390)
|+|+|++|++|+.. +.+||||+++++ +.+.++|+++++ .||.|||+|.|.+.+.+ ...+.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999876 789999999997 234578999988 99999999999987642 34678888888766556
Q ss_pred ceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
..+|. +++..+..+...+.|++|.+.. ......|+|+++
T Consensus 76 ~~~g~--v~l~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~ 114 (117)
T cd08383 76 IVIGK--VALSKLDLGQGKDEWFPLTPVD---PDSEVQGSVRLR 114 (117)
T ss_pred eEEEE--EEecCcCCCCcceeEEECccCC---CCCCcCceEEEE
Confidence 56665 5555555577789999997642 134578999987
No 92
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.63 E-value=1.4e-16 Score=148.22 Aligned_cols=109 Identities=33% Similarity=0.578 Sum_probs=95.5
Q ss_pred ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecC-CCCEEEEEEEEcC
Q 016385 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 336 (390)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~-~~~~L~v~v~d~d 336 (390)
....|+|+|.+|+||.++|.+|.||||+++.+-+++ ..+++|++++.++||+|||+|.|.+... .+..|.++|||||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 456789999999999999999999999999997654 3478899999999999999999998754 4568999999999
Q ss_pred CCCCCceeEEEEEEccccCCCceeeEEEEcccc
Q 016385 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369 (390)
Q Consensus 337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~ 369 (390)
..+++||+|...+.+++|... ..+.|+.|..+
T Consensus 258 rTsRNDFMGslSFgisEl~K~-p~~GWyKlLsq 289 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQ 289 (683)
T ss_pred ccccccccceecccHHHHhhc-chhhHHHHhhh
Confidence 999999999999999998754 46789998764
No 93
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.61 E-value=4.3e-15 Score=117.85 Aligned_cols=82 Identities=28% Similarity=0.505 Sum_probs=70.6
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEc------
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD------ 335 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~------ 335 (390)
|.|+|.+|++|+ +.+||||++++.+.+ ....+|+++++|+||.|||+|+|.+. ..+.|++.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence 579999999996 569999999997543 35789999999999999999999986 367999999998
Q ss_pred -CCCCCCceeEEEEEEcc
Q 016385 336 -EGIQSSELIGCAQVRLC 352 (390)
Q Consensus 336 -d~~~~d~~lG~~~v~l~ 352 (390)
|..++|+.+|++.+.|+
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 45678999999888874
No 94
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.60 E-value=2.3e-14 Score=117.67 Aligned_cols=116 Identities=26% Similarity=0.413 Sum_probs=93.4
Q ss_pred EEEEEEeeecCCcccc--CCCCCCcEEEEEEecCC---CceEeeeccCCCC-CCeeeeEEEEEEecCCCCEEEEEEEEcC
Q 016385 263 TLEVKLVQAKGLTNKD--LIGKSDPYAVLFVRPLP---EKTKKSKTINNDL-NPIWNEHFEFIVEDESTQHLVVRIYDDE 336 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~kT~v~~~~~-nP~w~e~f~f~v~~~~~~~L~v~v~d~d 336 (390)
.|+|+|++|++|+..+ ..+..||||++++...+ ...++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999986332 4578899887765 9999999999998776668999999999
Q ss_pred CCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
.. ++++||++.++++++..| ..|++|.... ......|.|.++
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~---~~~~~~~~l~v~ 124 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQG---YRHVPLLDSK---GEPLELSTLFVH 124 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCc---eEEEEecCCC---CCCCcceeEEEE
Confidence 87 899999999999999655 3577886421 122455787766
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.58 E-value=1.8e-14 Score=115.04 Aligned_cols=91 Identities=26% Similarity=0.440 Sum_probs=76.6
Q ss_pred EeeecCCccccCCCCCCcEEEEEEecCC---CceEeeeccCCCCCCeeeeEEEEEEecC----CCCEEEEEEEEcCCCCC
Q 016385 268 LVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRIYDDEGIQS 340 (390)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~~~nP~w~e~f~f~v~~~----~~~~L~v~v~d~d~~~~ 340 (390)
.++|++|+..|..|.+|||+++++.+.+ ...++|+++++++||.|| +|.|.+.+. ..+.|.++|||++..++
T Consensus 6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~ 84 (110)
T cd04047 6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGK 84 (110)
T ss_pred EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCC
Confidence 4689999999999999999999987432 236899999999999999 588875432 25799999999999999
Q ss_pred CceeEEEEEEccccCCCce
Q 016385 341 SELIGCAQVRLCELEPGKV 359 (390)
Q Consensus 341 d~~lG~~~v~l~~l~~~~~ 359 (390)
|++||++.++++++..+..
T Consensus 85 d~~iG~~~~~l~~l~~~~~ 103 (110)
T cd04047 85 HDLIGEFETTLDELLKSSP 103 (110)
T ss_pred CcEEEEEEEEHHHHhcCCC
Confidence 9999999999999975443
No 96
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.56 E-value=1.2e-14 Score=160.22 Aligned_cols=116 Identities=15% Similarity=0.292 Sum_probs=99.4
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCC-CCEEEEEEEEcCC
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDEG 337 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~-~~~L~v~v~d~d~ 337 (390)
.-.|.|+|+|++|++|. +..|.+||||++.++. +++.||++++++.||.|||.|.|.+.++. ++.+.++|||+|.
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 56899999999999998 4478999999999982 34678999999999999999999888764 4679999999999
Q ss_pred CCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeE---EEEE
Q 016385 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ---VRIK 385 (390)
Q Consensus 338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~---i~l~ 385 (390)
++ ++.+|++++++.++..+.....||+|.+ ++++.|+ |+++
T Consensus 2053 f~-kd~~G~~~i~l~~vv~~~~~~~~~~L~~------~~~k~G~~~~~~~e 2096 (2102)
T PLN03200 2053 FG-KSSLGKVTIQIDRVVMEGTYSGEYSLNP------ESNKDGSSRTLEIE 2096 (2102)
T ss_pred cC-CCCCceEEEEHHHHhcCceeeeeeecCc------ccccCCCcceEEEE
Confidence 85 4599999999999998889999999964 3445666 6665
No 97
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.53 E-value=6.3e-14 Score=105.89 Aligned_cols=85 Identities=35% Similarity=0.596 Sum_probs=76.7
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (390)
|+|+|.+|++|...+..+..|||+++.+.......++|++++++.+|.|+|+|.|.+..+..+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 68999999999998878899999999998544467999999999999999999999887777789999999999988999
Q ss_pred eEEEE
Q 016385 344 IGCAQ 348 (390)
Q Consensus 344 lG~~~ 348 (390)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 98
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.37 E-value=5.7e-12 Score=97.83 Aligned_cols=96 Identities=38% Similarity=0.655 Sum_probs=82.0
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (390)
+.|+|++|+++......+..+||+++++.+.+....+|+++.++.||.|||+|.|.+.....+.+.++|||++..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 67999999999887655678999999997432357899999999999999999999987657799999999998777999
Q ss_pred eEEEEEEccccCCCce
Q 016385 344 IGCAQVRLCELEPGKV 359 (390)
Q Consensus 344 lG~~~v~l~~l~~~~~ 359 (390)
+|.+.+++.++..+..
T Consensus 82 ~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 82 IGQVTIPLSDLLLGGR 97 (101)
T ss_pred eEEEEEEHHHcccCcc
Confidence 9999999998876543
No 99
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=8.4e-13 Score=128.16 Aligned_cols=118 Identities=32% Similarity=0.635 Sum_probs=98.5
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~ 338 (390)
+-...++++|+.|++|..+|..|++|||+...++ +.+.+|+++..++||.|||.|+|..++. +..+.++|||+|..
T Consensus 292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~---ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~d 367 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG---KTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDND 367 (1283)
T ss_pred ccceeeEEeeeecccceecccCCCCCCcEEEeec---ccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCccc
Confidence 4567899999999999999999999999999987 6678899999999999999999999876 55999999998852
Q ss_pred -----------CCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 339 -----------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 339 -----------~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
..|||+|+..+.+..+.. ..+.|+.|.+..+ ....+|.|++.
T Consensus 368 lksklrqkl~resddflgqtvievrtlsg--emdvwynlekrtd---ksavsgairlh 420 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTD---KSAVSGAIRLH 420 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEeccc--chhhhcchhhccc---hhhccceEEEE
Confidence 468999999999987653 4688999987542 23456766553
No 100
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.37 E-value=5.3e-12 Score=102.96 Aligned_cols=95 Identities=20% Similarity=0.357 Sum_probs=79.7
Q ss_pred EEEEEeeecCCccc--cCCCC--CCcEEEEEEecCCCceEeeeccCCCCC--CeeeeEEEEEEecC--------------
Q 016385 264 LEVKLVQAKGLTNK--DLIGK--SDPYAVLFVRPLPEKTKKSKTINNDLN--PIWNEHFEFIVEDE-------------- 323 (390)
Q Consensus 264 L~V~v~~a~~L~~~--d~~g~--~dpyv~v~~~~~~~~~~kT~v~~~~~n--P~w~e~f~f~v~~~-------------- 323 (390)
|+|.|.+|++++.. +..|. +||||+..+.+....+++|.+..+++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 78999999996543 34564 999999999865566889999999999 99999999887651
Q ss_pred ---------CCCEEEEEEEEcCCCCCCceeEEEEEEccccCCCc
Q 016385 324 ---------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK 358 (390)
Q Consensus 324 ---------~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~ 358 (390)
....|.++|||+|.+++|+++|++++++..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24578999999999999999999999999886553
No 101
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.36 E-value=6.7e-12 Score=97.07 Aligned_cols=101 Identities=39% Similarity=0.725 Sum_probs=86.7
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCce
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (390)
|.|++++|+++......+..+||+.+.+.. ...++|+++.++.||.|++.|.|.+.......+.++||+++..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 468999999998766667899999999973 367899999999999999999999987456789999999998877899
Q ss_pred eEEEEEEccccC-CCceeeEEEEc
Q 016385 344 IGCAQVRLCELE-PGKVKDVWLKL 366 (390)
Q Consensus 344 lG~~~v~l~~l~-~~~~~~~w~~L 366 (390)
+|.+.+++.++. .+.....|++|
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceecC
Confidence 999999999987 66667778764
No 102
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.35 E-value=7.5e-12 Score=95.90 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=73.5
Q ss_pred HHHHHHHhhhH--HHHHHHHHHHhHHHHHhhc-CCCccceEEEeEEecCCCCCeEeeEEEEecC-CCeEEEEEEEEEeeC
Q 016385 75 NHHLEKLWPYV--NEAASELIKSSVEPVLEQY-RPFILSSLKFSKFTLGTVAPQFTGVSIIEDG-GSGVTMELEMQWDAN 150 (390)
Q Consensus 75 N~~l~~~Wp~~--~~~~~~~i~~~l~~~l~~~-~p~~l~~i~~~~~~lG~~~P~i~~ir~~~~~-~~~v~le~~~~~~~~ 150 (390)
|.+++|++-.+ .+.+.+.+++.++..|++. +|+++++|+++++++|+.||.|+++|+.+.+ ++++.+|+|+.|.|+
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 77888876544 3578999999999999984 5999999999999999999999999998654 456999999999999
Q ss_pred ceEEEEEEe
Q 016385 151 SSIILAIKT 159 (390)
Q Consensus 151 ~~i~l~v~~ 159 (390)
+.+.++++.
T Consensus 81 ~~l~l~t~l 89 (91)
T PF10296_consen 81 FSLTLETKL 89 (91)
T ss_pred eEEEEEEEE
Confidence 999888763
No 103
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.31 E-value=3.9e-12 Score=125.12 Aligned_cols=117 Identities=25% Similarity=0.451 Sum_probs=104.0
Q ss_pred eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCC
Q 016385 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d 341 (390)
..|.|+|.+|+||+..+..|.+||||.+.++ +..+.||.++.+++.|.|.|.|+|.++.. -+.|.|-|||.| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD--~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD--QEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeec--chhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-cccc
Confidence 4689999999999999999999999999997 45689999999999999999999999754 468999999999 8999
Q ss_pred ceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
+.||.+.+.=++|..-...+.|+.|.+ ...+....|+||++
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~---VD~dsEVQG~v~l~ 121 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP---VDPDSEVQGKVHLE 121 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc---cCCChhhceeEEEE
Confidence 999999999888877778999999975 33467788999988
No 104
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.28 E-value=1e-11 Score=128.64 Aligned_cols=121 Identities=27% Similarity=0.463 Sum_probs=103.8
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~ 338 (390)
.+.|-|+|.+..|.||+..|.+|.+||||++.+. +...++|+++++|+||.|||.|.+.+.......+.+.|+|+|..
T Consensus 1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln--~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLN--EKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG 1114 (1227)
T ss_pred cccCcEEEEEeccCCCcccccCCCCCceEEEEec--ceecccccchhccCCCCccccceEeeeccccceEEEEEeecccC
Confidence 5789999999999999999999999999999997 34489999999999999999999999977778999999999999
Q ss_pred CCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 339 QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 339 ~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
.+++.||.+.++|..+..+.....-.+|.... .....|.++..
T Consensus 1115 ~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~----~~~~~g~~~~~ 1157 (1227)
T COG5038 1115 EKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT----FIVLDGTLHPG 1157 (1227)
T ss_pred CCccccccccccHhhcCcCCccceeeeccCcc----eEecccEeecc
Confidence 99999999999999999887777667775421 22345555544
No 105
>PLN02270 phospholipase D alpha
Probab=99.28 E-value=3.9e-11 Score=122.36 Aligned_cols=125 Identities=22% Similarity=0.403 Sum_probs=101.7
Q ss_pred ceeEEEEEEeeecCCcccc------------------CCCCCCcEEEEEEecCCCceEeeeccCCC-CCCeeeeEEEEEE
Q 016385 260 PVGTLEVKLVQAKGLTNKD------------------LIGKSDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIV 320 (390)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~kT~v~~~~-~nP~w~e~f~f~v 320 (390)
-.|.|.++|.+|++|++.+ ..+.+|||+.+.+. +.++.||+++.+. .||.|+|+|.+.+
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~a~v~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE--KARVGRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC--CcEEEEEeecCCCCCCCccccceEEee
Confidence 4689999999999998631 12467999999997 4678999999885 6999999999999
Q ss_pred ecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCCCceeeEEEEcccccccCCCCeeeeEEEEE--EeecC
Q 016385 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK--YPPYK 390 (390)
Q Consensus 321 ~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~~ 390 (390)
.+.. ..+.|.|.|.|.++ ..+||.+.+|+.++..|...+.|+++.....+ ..+..-+|+++ |+|++
T Consensus 84 ah~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~--p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 84 AHMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDKN--PIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ccCc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCCC--cCCCCCEEEEEEEEEEcc
Confidence 8875 48999999999886 56999999999999999999999999764211 12222378888 99863
No 106
>PLN02223 phosphoinositide phospholipase C
Probab=99.24 E-value=6.4e-11 Score=116.21 Aligned_cols=105 Identities=25% Similarity=0.341 Sum_probs=85.9
Q ss_pred eeEEEEEEeeecCCcc-----ccCCCCCCcEEEEEEec--CCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEE
Q 016385 261 VGTLEVKLVQAKGLTN-----KDLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY 333 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~~-----~d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~ 333 (390)
...|.|+|+.|++++. .+.....||||++.+.+ .+...++|.+..|+.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 4679999999998751 12235679999999863 3344677888889999999999999999998888999999
Q ss_pred EcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
|+|..++|+++|++.+|+..+++|-. +.+|..
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~GyR---~VpL~~ 519 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGIR---AVPLYD 519 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCce---eEeccC
Confidence 99988889999999999999998853 456643
No 107
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2e-11 Score=119.23 Aligned_cols=108 Identities=29% Similarity=0.481 Sum_probs=89.2
Q ss_pred ccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEE
Q 016385 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (390)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~ 333 (390)
.++.|.|+|.|++|++|..++..+.+||||++++...+. .+++|.+.+++.||.|||+|.|.+... ..-.+.++||
T Consensus 294 ~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~ 373 (421)
T KOG1028|consen 294 LPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVW 373 (421)
T ss_pred ecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEE
Confidence 467899999999999999999999999999999875442 367899999999999999999988743 4457899999
Q ss_pred EcCCCCCCceeEEEEEEccccCCCceeeEEEEcc
Q 016385 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~ 367 (390)
|+|.++++++||++.+.... .+....+|.++.
T Consensus 374 d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~ 405 (421)
T KOG1028|consen 374 DHDTLGSNDLIGRCILGSDS--TGEEVRHWQEML 405 (421)
T ss_pred EcccccccceeeEEEecCCC--CchHHHHHHHHH
Confidence 99999999999998888764 333345555543
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=99.18 E-value=3.4e-10 Score=113.41 Aligned_cols=105 Identities=24% Similarity=0.364 Sum_probs=86.8
Q ss_pred eeEEEEEEeeecCCccc------cCCCCCCcEEEEEEec--CCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEE
Q 016385 261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v 332 (390)
...|.|+|+.|++++.. +.....||||++.+-+ .+..+.+|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 1223459999999863 334577899999999999999999999888777899999
Q ss_pred EEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 333 ~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
||+|..+.++++|++.+|+..|..|-. |++|..
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~~ 581 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPLHD 581 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce---eEeCcC
Confidence 999988889999999999999998863 888864
No 109
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.08 E-value=6.5e-10 Score=111.22 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=85.3
Q ss_pred eeEEEEEEeeecCCccc------cCCCCCCcEEEEEEec--CCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEE
Q 016385 261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v 332 (390)
...|.|+|+.|+++... +.....||||++.+-. .+..+++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46799999999986421 2223569999999863 334467888999999999999999999988888999999
Q ss_pred EEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 333 ~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
+|+|...+|+++|+..+|+..|+.|-. ..+|..
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~ 580 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFN 580 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc---eEeccC
Confidence 999988889999999999999998753 345643
No 110
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.03 E-value=5.2e-11 Score=117.33 Aligned_cols=126 Identities=33% Similarity=0.610 Sum_probs=100.0
Q ss_pred ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC-----------------------C-----ceEeeeccCCCCCCe
Q 016385 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-----------------------E-----KTKKSKTINNDLNPI 311 (390)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-----------------------~-----~~~kT~v~~~~~nP~ 311 (390)
|.-.+.|.+.+|++|.++|.+|.||||+...+.+.- + -.+-|++++.|+||.
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk 191 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK 191 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence 444566778999999999999999999998774210 0 024578889999999
Q ss_pred eeeEEEEEEecCCCCEEEEEEEEcCCC---------------------------------CC---CceeEEEEEEccccC
Q 016385 312 WNEHFEFIVEDESTQHLVVRIYDDEGI---------------------------------QS---SELIGCAQVRLCELE 355 (390)
Q Consensus 312 w~e~f~f~v~~~~~~~L~v~v~d~d~~---------------------------------~~---d~~lG~~~v~l~~l~ 355 (390)
|+|.|.|.+.+..+..+.+.+||+|.- +. |||+|.+.+|+.++.
T Consensus 192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 999999999999888999999998721 22 799999999999986
Q ss_pred CCceeeEEEEcccccccCCCCeeeeEEEEE-Eeec
Q 016385 356 PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK-YPPY 389 (390)
Q Consensus 356 ~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~-y~p~ 389 (390)
. ...+.||.|++.. ...+..|+++++ +..+
T Consensus 272 ~-~Gld~WFkLepRS---~~S~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 272 P-DGLDQWFKLEPRS---DKSKVQGQVKLKLWLST 302 (1103)
T ss_pred c-chHHHHhccCccc---ccccccceEEEEEEEee
Confidence 4 3578999998753 245678999988 6543
No 111
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.02 E-value=1.9e-09 Score=107.78 Aligned_cols=105 Identities=23% Similarity=0.308 Sum_probs=84.7
Q ss_pred eeEEEEEEeeecCCc----cc--cCCCCCCcEEEEEEe--cCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEE
Q 016385 261 VGTLEVKLVQAKGLT----NK--DLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~----~~--d~~g~~dpyv~v~~~--~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v 332 (390)
...|+|+|+.|+++. .. +.....||||++.+. +.+..+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998753 11 122457999999986 3334577899999999999999999999888878999999
Q ss_pred EEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 333 ~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
+|+|..+.|+++|++.+|+..|+.|-. ..+|..
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~ 563 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHS 563 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc---eEEccC
Confidence 999988889999999999999998753 345643
No 112
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.00 E-value=9.5e-10 Score=110.20 Aligned_cols=97 Identities=28% Similarity=0.438 Sum_probs=81.7
Q ss_pred EEEEEEeeecCCccc-cC---CCCCCcEEEEEEe--cCCCceEeee-ccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEc
Q 016385 263 TLEVKLVQAKGLTNK-DL---IGKSDPYAVLFVR--PLPEKTKKSK-TINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 335 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~-d~---~g~~dpyv~v~~~--~~~~~~~kT~-v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~ 335 (390)
.|.|+|..|+++... +. ...+|||+.+.+. +......+|+ +..|+.||.|+|+|+|.+..|+-..++|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 699999999976543 21 2457999999985 2334577888 567899999999999999999888999999999
Q ss_pred CCCCCCceeEEEEEEccccCCCce
Q 016385 336 EGIQSSELIGCAQVRLCELEPGKV 359 (390)
Q Consensus 336 d~~~~d~~lG~~~v~l~~l~~~~~ 359 (390)
|..++|+|+|+..+|+.+|.+|-.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyR 720 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYR 720 (746)
T ss_pred CCCCcccccceeeccHHHhhCcee
Confidence 999999999999999999998753
No 113
>PLN02228 Phosphoinositide phospholipase C
Probab=98.96 E-value=4.5e-09 Score=104.82 Aligned_cols=105 Identities=21% Similarity=0.285 Sum_probs=84.3
Q ss_pred eeEEEEEEeeecCCcc---c---cCCCCCCcEEEEEEec--CCCceEeeeccCCCCCCee-eeEEEEEEecCCCCEEEEE
Q 016385 261 VGTLEVKLVQAKGLTN---K---DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR 331 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~~---~---d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~~~nP~w-~e~f~f~v~~~~~~~L~v~ 331 (390)
...|+|+|++|++|+. . +.....||||++.+.+ .+...++|++++++.||.| ||+|.|.+..++-..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3479999999998731 1 1123479999999863 3345679999999999999 9999999988887899999
Q ss_pred EEEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 332 v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
|+|+|..+.|+++|++.+|++.|+.|-. .++|..
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~ 543 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHD 543 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccC
Confidence 9999988889999999999999988743 345643
No 114
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.86 E-value=7.4e-10 Score=109.37 Aligned_cols=96 Identities=31% Similarity=0.479 Sum_probs=82.5
Q ss_pred ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC----CceEeeeccCCCCCCeeeeEEEEEEecC----CCCEEEEE
Q 016385 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVR 331 (390)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~~~nP~w~e~f~f~v~~~----~~~~L~v~ 331 (390)
....|.|.|+.|+++.+-|.+|.|||||++.+.|.. ...++|++++.|+||+|+|+|+|.|... +...+.|+
T Consensus 945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEE
Confidence 344556667889999999999999999999998532 3478999999999999999999999753 46689999
Q ss_pred EEEcCCCCCCceeEEEEEEccccC
Q 016385 332 IYDDEGIQSSELIGCAQVRLCELE 355 (390)
Q Consensus 332 v~d~d~~~~d~~lG~~~v~l~~l~ 355 (390)
|+|+|-.+.+||-|++.+.|+++.
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred eeccceecccccchHHHHhhCCCC
Confidence 999999999999999999998874
No 115
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.85 E-value=1.1e-08 Score=78.63 Aligned_cols=85 Identities=24% Similarity=0.439 Sum_probs=69.3
Q ss_pred EEEEEeeecCCcccc---CCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCC
Q 016385 264 LEVKLVQAKGLTNKD---LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (390)
Q Consensus 264 L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~ 340 (390)
|.|+|.+|+++...+ ..+.+|||+.++++ +.++.||++ +.||.|||+|.|.+. . ...+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d~~kaRTr~---srnd~WnE~F~i~Vd-k-~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--DVERARTKP---SRNDRWNEDFEIPVE-K-NNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC--CEEEEeccC---CCCCcccceEEEEec-C-CcEEEEEEEeCCC-Ce
Confidence 578999999998776 56788999999997 345778876 479999999999994 3 5599999999865 34
Q ss_pred CceeEEEEEEccccCC
Q 016385 341 SELIGCAQVRLCELEP 356 (390)
Q Consensus 341 d~~lG~~~v~l~~l~~ 356 (390)
.-.+|...+.++++.+
T Consensus 73 ~~Pi~llW~~~sdi~E 88 (109)
T cd08689 73 PVPVGLLWLRLSDIAE 88 (109)
T ss_pred ecceeeehhhHHHHHH
Confidence 5688998888888743
No 116
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.83 E-value=1.8e-08 Score=100.93 Aligned_cols=95 Identities=24% Similarity=0.386 Sum_probs=79.6
Q ss_pred eEEEEEEeeecCCccccCCCCCCcEEEEEEec---CCCceEeeeccCCCCCCeee-eEEEEEEecCCCCEEEEEEEEcCC
Q 016385 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP---LPEKTKKSKTINNDLNPIWN-EHFEFIVEDESTQHLVVRIYDDEG 337 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~kT~v~~~~~nP~w~-e~f~f~v~~~~~~~L~v~v~d~d~ 337 (390)
-.|.|+|+.|+.|+... .|-..||+.+.+-+ +.+..++|.++.|++||.|| |.|+|.+.+|+-..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 46889999999999543 35567999999853 22334556667899999999 999999999998999999999999
Q ss_pred CCCCceeEEEEEEccccCCC
Q 016385 338 IQSSELIGCAQVRLCELEPG 357 (390)
Q Consensus 338 ~~~d~~lG~~~v~l~~l~~~ 357 (390)
++...|||++..|+..+..|
T Consensus 1144 fs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred cCCcceeeeeecchhhhhcc
Confidence 99889999999999888765
No 117
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.82 E-value=1.3e-08 Score=98.55 Aligned_cols=116 Identities=26% Similarity=0.485 Sum_probs=95.6
Q ss_pred eEEEEEEeeecCCccccCC-CCCCcEEEEEEecCCCceEeeeccCCCCCCeee-eEEEEEEecC--CCCEEEEEEEEcCC
Q 016385 262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN-EHFEFIVEDE--STQHLVVRIYDDEG 337 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~-e~f~f~v~~~--~~~~L~v~v~d~d~ 337 (390)
|.|.|+|..|++|+-+|.. ...|.|+.+++. ...+||.+..+++||.|| +.|.|.|.+. .++.|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~---n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA---NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEec---ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 6788999999999998864 457999999997 678999999999999999 6789998764 56789999999999
Q ss_pred CCCCceeEEEEEEccccC----------CCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 338 IQSSELIGCAQVRLCELE----------PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 338 ~~~d~~lG~~~v~l~~l~----------~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
.+.+|-||.+.++++.+. .|.....|+++.... ..-+|+|++-
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-----hgirgeinvi 132 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-----HGIRGEINVI 132 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-----ccccceeEEE
Confidence 999999999999987762 234557999987532 2356887754
No 118
>PLN02352 phospholipase D epsilon
Probab=98.80 E-value=4.7e-08 Score=99.93 Aligned_cols=119 Identities=13% Similarity=0.294 Sum_probs=89.9
Q ss_pred cceeEEEEEEeeecCCccc----cCC-CCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNK----DLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY 333 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~ 333 (390)
.-.|.|.++|.+|+.+... ... ...|||+.+.++ +.++.|| .+..||.|+|+|.+.+.+.....+.|.|.
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk 81 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLK 81 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeC--CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEe
Confidence 3579999999999843321 111 223999999997 4667888 55669999999999998876458999998
Q ss_pred EcCCCCCCceeEEEEEEccccCCCce-eeEEEEcccccccCCCCeeeeEEEEE--EeecC
Q 016385 334 DDEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVKDLDVQRDTKYRGQVRIK--YPPYK 390 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v~l~~l~~~~~-~~~w~~L~~~~~~~~~~~~~G~i~l~--y~p~~ 390 (390)
| ...+||.+.+|+.++..|.. .+.|+++....... ... .+|+++ |+|.+
T Consensus 82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p--~~~-~~~~~~~~~~~~~ 133 (758)
T PLN02352 82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKP--NPE-LKLRFMLWFRPAE 133 (758)
T ss_pred c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCC--CCC-CEEEEEEEEEEhh
Confidence 8 26799999999999988866 89999997643221 111 478888 99863
No 119
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.63 E-value=4.5e-08 Score=97.05 Aligned_cols=116 Identities=22% Similarity=0.308 Sum_probs=85.6
Q ss_pred eeecCCccccCCCCCCcEEEEEEe-cCCCceEeeeccCCCCCCeeeeEEEEEEecC---------------CCCEEEEEE
Q 016385 269 VQAKGLTNKDLIGKSDPYAVLFVR-PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQHLVVRI 332 (390)
Q Consensus 269 ~~a~~L~~~d~~g~~dpyv~v~~~-~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~---------------~~~~L~v~v 332 (390)
++++++.+.+ ++.+|||+.+... +...+..+|++++++.+|.|+|.|+|.+... ....+++++
T Consensus 138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l 216 (800)
T KOG2059|consen 138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL 216 (800)
T ss_pred hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence 4444444443 4669999999875 3333457899999999999999999998644 344688999
Q ss_pred EE-cCCCCCCceeEEEEEEccccCCCceeeEEEEcccccccCC--CCeeeeEEEEE
Q 016385 333 YD-DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQR--DTKYRGQVRIK 385 (390)
Q Consensus 333 ~d-~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~--~~~~~G~i~l~ 385 (390)
|+ .+....++|+|++.+++..+......+.||.|++..+..+ .+..-|.+++.
T Consensus 217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~ 272 (800)
T KOG2059|consen 217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLN 272 (800)
T ss_pred ccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeee
Confidence 99 5566669999999999998886677789999998643322 23345666665
No 120
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=98.52 E-value=6.2e-07 Score=88.52 Aligned_cols=227 Identities=15% Similarity=0.273 Sum_probs=160.8
Q ss_pred CCCCccccCCc-------ccHHHHHHHHHHHhhhH--HHH----HHHHHHHhHHHHHhhcC-CCccceEEEeEEecCCCC
Q 016385 58 FYPSWVVFSHR-------QKLTWLNHHLEKLWPYV--NEA----ASELIKSSVEPVLEQYR-PFILSSLKFSKFTLGTVA 123 (390)
Q Consensus 58 ~~p~w~~~~~~-------E~~~WlN~~l~~~Wp~~--~~~----~~~~i~~~l~~~l~~~~-p~~l~~i~~~~~~lG~~~ 123 (390)
..|.|+..-.. ..|-.+|.++..++... ..+ +-+.+...++..+.... ...++.+.+.++.+|.+.
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 45777665322 24666677777776532 122 33333344444554433 348999999999999999
Q ss_pred CeEeeEEEEecC------------C-------------CeEEEEEEEEEeeCceEEEEEEeecCeeeeEEEEEEEEEEEE
Q 016385 124 PQFTGVSIIEDG------------G-------------SGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 178 (390)
Q Consensus 124 P~i~~ir~~~~~------------~-------------~~v~le~~~~~~~~~~i~l~v~~~~g~~~~v~v~~~~~~g~~ 178 (390)
|.+++.+++.-+ + ..+.+-++++|.|+..-++++....+....++|+..+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998621 0 124566899999999888888877777778999999999999
Q ss_pred EEEEeeCCcCCCccceEEEEeccceeEEEEEEE--cccccccCCCcHHHHHHHHHHHhhccccCCceeEe--eCCCCC--
Q 016385 179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKV--VGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIV--PILPGD-- 252 (390)
Q Consensus 179 rv~l~pl~~~~P~~~~~~~~f~~~P~l~f~l~~--~g~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~i--pl~~~~-- 252 (390)
|+.+. ..| ..+++++|...|.+..+++. .|-.+.. -|.+.|...++.++.+...|||++.. |..+..
T Consensus 241 r~~~~----r~p-y~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~ 313 (1051)
T KOG3532|consen 241 RVILS----RQP-YHHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF 313 (1051)
T ss_pred eEEEE----ecc-ceeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence 99986 333 67789999999988777655 2222211 25678888999999999999998863 444321
Q ss_pred ------cccccccceeEEEEEEeeecCCccccCCCCCCcEEEEEEec
Q 016385 253 ------YSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP 293 (390)
Q Consensus 253 ------~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~ 293 (390)
.+.....+.|.+.|+++++..|.. ..++..-||.+.+.+
T Consensus 314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 314 QASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES 358 (1051)
T ss_pred ccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence 111234689999999999988864 457788999888763
No 121
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.43 E-value=1.8e-07 Score=97.24 Aligned_cols=109 Identities=26% Similarity=0.402 Sum_probs=90.2
Q ss_pred ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCc--eEeeeccCCCCCCeeeeEEEEE---EecCCCCEEEEEEEE
Q 016385 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFI---VEDESTQHLVVRIYD 334 (390)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~v~~~~~nP~w~e~f~f~---v~~~~~~~L~v~v~d 334 (390)
..|+|.|-|.-+++|.--.....+||||+.++.|+..+ +.||+++++|.||.|||..... ......+.|.+.||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 47889999999999965444567999999999876643 6789999999999999976554 223355789999999
Q ss_pred cCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 335 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
.+....+.++|.+.++|.++...+....||.|..
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 9999999999999999998877766779999954
No 122
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.40 E-value=1e-06 Score=86.32 Aligned_cols=118 Identities=25% Similarity=0.415 Sum_probs=86.2
Q ss_pred eeecCCccccCCCCCCcEEEEEEec-CC--CceEeeeccCCCCCCeeeeEEEEEEecC----CCCEEEEEEEEcCCCCCC
Q 016385 269 VQAKGLTNKDLIGKSDPYAVLFVRP-LP--EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRIYDDEGIQSS 341 (390)
Q Consensus 269 ~~a~~L~~~d~~g~~dpyv~v~~~~-~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~----~~~~L~v~v~d~d~~~~d 341 (390)
.+|++|.++|.++++|||..++-.. ++ ...++|++.++++||.|.+ |.+..... ....+.+.+||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 5588999999999999999888542 22 2378999999999999998 55554332 246888999999999999
Q ss_pred ceeEEEEEEccccCCCceeeEEEEccc-ccccCCCCeeeeEEEEE-Ee
Q 016385 342 ELIGCAQVRLCELEPGKVKDVWLKLVK-DLDVQRDTKYRGQVRIK-YP 387 (390)
Q Consensus 342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~-~~~~~~~~~~~G~i~l~-y~ 387 (390)
+++|.+..++.++........|....+ ..+.+++.+.+|++.+. |.
T Consensus 222 ~~ig~~~tt~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~ 269 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQEPGSPNQIMLINPKKKAKKKSYKNSGQLILDRFT 269 (529)
T ss_pred CceeEecccHHHhcccCCcccccccChhhhhhhhcccccceEEehhee
Confidence 999999999998875222334433332 22223456677888876 54
No 123
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=2e-06 Score=84.58 Aligned_cols=111 Identities=22% Similarity=0.337 Sum_probs=91.6
Q ss_pred eeEEEEEEeeecCCccccCCCCCCcEEEEEEe-c---CCCceEeeeccCCCCCCeeeeEEEEEEecC---CCCEEEEEEE
Q 016385 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR-P---LPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIY 333 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~---~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~---~~~~L~v~v~ 333 (390)
...++|.|+.|.+|+-. ..|.-.||+.+.+- | +.++++.|++..++..|.+||+|.|.+.+. +.-.|.++|.
T Consensus 1124 ehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred cceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 34577888999998754 35677899999974 2 334577899999999999999999998653 5568999999
Q ss_pred EcCCCCCCceeEEEEEEccccCCCceeeEEEEccccccc
Q 016385 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV 372 (390)
Q Consensus 334 d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~ 372 (390)
|+.-.+.|..+|-+.+.|.++........|++|.+...+
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihm 1241 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHM 1241 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCceeEeeeccccccc
Confidence 998888899999999999999888888999999876544
No 124
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.29 E-value=3.7e-07 Score=93.75 Aligned_cols=92 Identities=27% Similarity=0.389 Sum_probs=79.6
Q ss_pred eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCC
Q 016385 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~ 340 (390)
.-.++|.+++|-+|.+.|.+|.+|||+.+.++.. ...-++..+.+++||+|++.|++....+....+.+.|||+|..+.
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~-~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKK-RTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccc-hhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence 3456799999999999999999999999998721 112456678999999999999998888877899999999999999
Q ss_pred CceeEEEEEEccc
Q 016385 341 SELIGCAQVRLCE 353 (390)
Q Consensus 341 d~~lG~~~v~l~~ 353 (390)
|+.+|+..+++++
T Consensus 691 d~~iget~iDLEn 703 (1105)
T KOG1326|consen 691 DEKIGETTIDLEN 703 (1105)
T ss_pred cchhhceehhhhh
Confidence 9999999999865
No 125
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=1.3e-06 Score=79.85 Aligned_cols=104 Identities=24% Similarity=0.347 Sum_probs=83.0
Q ss_pred ceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCc--eEeeeccCCCCCCeeeeEEEEEEec--CCCCEEEEEEEEc
Q 016385 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYDD 335 (390)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~v~~~~~nP~w~e~f~f~v~~--~~~~~L~v~v~d~ 335 (390)
...-+.|++++|..|..+|.+|.+|||+..++.++.+. +++|++.+++.+|.++++|.+.+.. .....+.+.+||+
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 45678899999999999999999999999999865443 5678889999999999999988754 3456889999999
Q ss_pred CCCCCCceeEEEEEEccccCCCceeeEEEE
Q 016385 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLK 365 (390)
Q Consensus 336 d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~ 365 (390)
+..+..+.+|-+.... .+.+....+|..
T Consensus 311 ~~G~s~d~~GG~~~g~--~rr~~v~~h~gr 338 (362)
T KOG1013|consen 311 DIGKSNDSIGGSMLGG--YRRGEVHKHWGR 338 (362)
T ss_pred CCCcCccCCCcccccc--cccchhhcCccc
Confidence 9877888999865543 344555555543
No 126
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=6.9e-07 Score=81.55 Aligned_cols=129 Identities=29% Similarity=0.406 Sum_probs=93.9
Q ss_pred cccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEE--EEEEecC-CCCEEEEE
Q 016385 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHF--EFIVEDE-STQHLVVR 331 (390)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f--~f~v~~~-~~~~L~v~ 331 (390)
+......+..++.+|++|+.++.++..|||++..+.+.-. .+.+|++..+++||.|+|+- .+...+. ....+++.
T Consensus 88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence 3456678889999999999999999999999999875322 25778899999999999864 3444433 34567899
Q ss_pred EEEcCCCCCCceeEEEEEEccccCCCcee--eEEEEcccccc-c-CCCCeeeeEEEEE
Q 016385 332 IYDDEGIQSSELIGCAQVRLCELEPGKVK--DVWLKLVKDLD-V-QRDTKYRGQVRIK 385 (390)
Q Consensus 332 v~d~d~~~~d~~lG~~~v~l~~l~~~~~~--~~w~~L~~~~~-~-~~~~~~~G~i~l~ 385 (390)
+.|.+.+...+++|+..+++..+.+...+ ..|+.-.-... . ..+...+|+|.++
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~is 225 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILIS 225 (362)
T ss_pred eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeee
Confidence 99999998899999999999888654432 34433221111 1 1234678888887
No 127
>PLN02964 phosphatidylserine decarboxylase
Probab=98.02 E-value=9.8e-06 Score=82.58 Aligned_cols=90 Identities=17% Similarity=0.337 Sum_probs=75.4
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCC
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~ 338 (390)
.-.|...+++++|+ ++ ..|+|..+..- +.+++||.+.++|.||+||+...|.+...+....++.|||.+.+
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~--g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSF--GEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEe--cceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 46799999999987 33 36898765432 47899999999999999999999999877666779999999999
Q ss_pred CCCceeEEEEEEccccCCC
Q 016385 339 QSSELIGCAQVRLCELEPG 357 (390)
Q Consensus 339 ~~d~~lG~~~v~l~~l~~~ 357 (390)
++++++|.|++++.++...
T Consensus 122 s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CHHHhhhheeecHhhccHH
Confidence 9999999999988776543
No 128
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.85 E-value=4.3e-05 Score=60.85 Aligned_cols=103 Identities=17% Similarity=0.378 Sum_probs=74.5
Q ss_pred EEEEEeeecCCcccc---------C----CCCCCcEEEEEEec-CCCceEeeeccCCCCCCeeeeEEEEEEe--------
Q 016385 264 LEVKLVQAKGLTNKD---------L----IGKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVE-------- 321 (390)
Q Consensus 264 L~V~v~~a~~L~~~d---------~----~g~~dpyv~v~~~~-~~~~~~kT~v~~~~~nP~w~e~f~f~v~-------- 321 (390)
|.|.|.+|.+|+... . .-.-++|+.+.+.- .+.+..+|+++.++-.|.|+.+++|.++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 357788888886421 0 01247999999763 2356788999999999999999999865
Q ss_pred c-------CCCCEEEEEEEEcCCC----------CCCceeEEEEEEccccCC-CceeeEEEEc
Q 016385 322 D-------ESTQHLVVRIYDDEGI----------QSSELIGCAQVRLCELEP-GKVKDVWLKL 366 (390)
Q Consensus 322 ~-------~~~~~L~v~v~d~d~~----------~~d~~lG~~~v~l~~l~~-~~~~~~w~~L 366 (390)
. .+...+.++||+.+.. .+|-.||.+.+|+.+|.. ......||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 1456789999996532 245689999999999854 3456788874
No 129
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.66 E-value=4.6e-05 Score=56.33 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=67.5
Q ss_pred EEEEeeecCCccccCCC-CCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEe--cCCCCEEEEEEEEcCCCCCC
Q 016385 265 EVKLVQAKGLTNKDLIG-KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE--DESTQHLVVRIYDDEGIQSS 341 (390)
Q Consensus 265 ~V~v~~a~~L~~~d~~g-~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~--~~~~~~L~v~v~d~d~~~~d 341 (390)
-|++++|+++.-....| ...-|++--+.-.....+||++..+..||.|.|+|.|.+. ...+-.|-+.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 37889999986543222 2334444333312234678999999999999999988764 3345577888888 45678
Q ss_pred ceeEEEEEEccccCCCceeeEEEE
Q 016385 342 ELIGCAQVRLCELEPGKVKDVWLK 365 (390)
Q Consensus 342 ~~lG~~~v~l~~l~~~~~~~~w~~ 365 (390)
+.||.|.+.++++.+ +..++|.+
T Consensus 80 e~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 80 RTIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred ceeeEEEeecccCCH-HHhhhhhc
Confidence 899999999987643 34567754
No 130
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.50 E-value=2.2e-05 Score=81.18 Aligned_cols=104 Identities=21% Similarity=0.290 Sum_probs=81.0
Q ss_pred eeEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecC---------CCCEEEEE
Q 016385 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------STQHLVVR 331 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~---------~~~~L~v~ 331 (390)
.-.+++.+.+|+.|...|..+.+|||+.+.+- ++.+.|.++.+|+||.|+.+..|.-... .-..+.++
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~---~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e 281 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDESDPDAAVEFC---GQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE 281 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccCCCchhhhhcc---cccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence 34567788999999999988999999999886 6788999999999999999877742211 12357899
Q ss_pred EEEcCCCCCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 332 v~d~d~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
+||.+..+.++++|++.....-+.. ...-.|+++..
T Consensus 282 ~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r 317 (1105)
T KOG1326|consen 282 VYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR 317 (1105)
T ss_pred eehhhhhchHHhhcccccceEEEec-CCccceEEeec
Confidence 9999999999999997765433222 34557888765
No 131
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.0004 Score=64.91 Aligned_cols=111 Identities=23% Similarity=0.365 Sum_probs=86.6
Q ss_pred cceeEEEEEEeeecCCccccC-CCCCCcEEEEEEecCCC--ceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEE-
Q 016385 259 KPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD- 334 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~--~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d- 334 (390)
...|.+.|.+++|++|..+.- ...++||+++++.+.+. .+.+|+...+|++|.+.....|.-..+ ...|.+.+|.
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~-~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP-GKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC-ccEEEEEEecc
Confidence 567899999999999986542 23689999999875442 256788888999988877666665544 5689999985
Q ss_pred cCCCCCCceeEEEEEEccccCCCc-eeeEEEEccccc
Q 016385 335 DEGIQSSELIGCAQVRLCELEPGK-VKDVWLKLVKDL 370 (390)
Q Consensus 335 ~d~~~~d~~lG~~~v~l~~l~~~~-~~~~w~~L~~~~ 370 (390)
+..+.++.|+|.+++-++++.-+. ..-.||+|....
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 666777889999999999997665 677999998743
No 132
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.74 E-value=0.021 Score=47.78 Aligned_cols=123 Identities=13% Similarity=0.154 Sum_probs=82.9
Q ss_pred ceeEEEEEEeeecCCccccC--CCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCC-------------
Q 016385 260 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES------------- 324 (390)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~------------- 324 (390)
..--|+++|..++-+...-. .+..+.-..+++. .++|.++|+.+..+.+|.++|.|.|.+....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 44578899999986543211 1455555666554 3478999999999999999999999986442
Q ss_pred CCEEEEEEEEcCCCCCCceeEEEEEEccccCCCcee--eEEEEcccccccCCCCeeeeEEEEE
Q 016385 325 TQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK--DVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 325 ~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~--~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
.+.+.+.|-..|..+...++|+-.++...+...... ..-..|.. .........|.|.++
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G--~~~e~kv~~GiL~l~ 146 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCG--VGPESKVPVGILDLR 146 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEec--cCCCCccceeEEEEE
Confidence 346788888877776678999999998887544333 22233332 112223467877766
No 133
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.62 E-value=0.0014 Score=61.97 Aligned_cols=109 Identities=18% Similarity=0.185 Sum_probs=78.8
Q ss_pred ceeEEEEEEeeecCCccccCCCCCCcEEEEEEe--cCCCceEeeeccCCCCCCeeeeEEEEEEecC-----------CCC
Q 016385 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-----------STQ 326 (390)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~-----------~~~ 326 (390)
....|.+.|+++.+++...-....|-|+.+.+. .+..++.+|.+++++.+|.|+|.|.+.+..- ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 344566677777776543222235677777753 2335677899999999999999999988651 233
Q ss_pred EEEEEEEEcCCC-CCCceeEEEEEEccccCCCceeeEEEEccc
Q 016385 327 HLVVRIYDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (390)
Q Consensus 327 ~L~v~v~d~d~~-~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~ 368 (390)
.+.|++|+...+ .+|.++|.+.+.+.-|.........++|..
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D 487 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD 487 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc
Confidence 588999998764 678999999999988876666667778764
No 134
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.90 E-value=0.12 Score=49.21 Aligned_cols=100 Identities=11% Similarity=0.250 Sum_probs=77.1
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEec-------CCCCEEEEEEEEcC
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-------ESTQHLVVRIYDDE 336 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~-------~~~~~L~v~v~d~d 336 (390)
+.++|++|++++... ...-.+...+. +....|..+..+..|.||......+.. .....+++++|-.|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~n---g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFN---GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeC---CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 568899999998652 23455566665 677888888889999999877666642 25668999999988
Q ss_pred -CCCCCceeEEEEEEcccc---CCC--ceeeEEEEcccc
Q 016385 337 -GIQSSELIGCAQVRLCEL---EPG--KVKDVWLKLVKD 369 (390)
Q Consensus 337 -~~~~d~~lG~~~v~l~~l---~~~--~~~~~w~~L~~~ 369 (390)
..++.+.+|.+.++|... ..+ ..+..|++|...
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~ 114 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS 114 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence 556788999999999988 555 567899999864
No 135
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.88 E-value=0.02 Score=59.26 Aligned_cols=92 Identities=24% Similarity=0.421 Sum_probs=69.2
Q ss_pred cceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC----CceEeeecc-CCCCCCeeeeE-EEEE-EecCCCCEEEEE
Q 016385 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTI-NNDLNPIWNEH-FEFI-VEDESTQHLVVR 331 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~-~~~~nP~w~e~-f~f~-v~~~~~~~L~v~ 331 (390)
-..+.+.|+|++|+-|..++ ..-||.+.+-..+ .+.++|+++ .++.||.|+|+ |.|. |--++-..|+|.
T Consensus 700 vIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia 775 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA 775 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence 35678899999999987654 4589999874322 245678776 57899999964 6664 333455689999
Q ss_pred EEEcCCCCCCceeEEEEEEccccCCCc
Q 016385 332 IYDDEGIQSSELIGCAQVRLCELEPGK 358 (390)
Q Consensus 332 v~d~d~~~~d~~lG~~~v~l~~l~~~~ 358 (390)
||+.. .+++|+-.+|++.+..|-
T Consensus 776 vyeEg----gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 776 VYEEG----GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred eeccC----CceeeeeccchhcccCcc
Confidence 99975 469999999999988774
No 136
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.79 E-value=0.26 Score=41.61 Aligned_cols=99 Identities=19% Similarity=0.336 Sum_probs=63.8
Q ss_pred eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCc---eEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEEEEc
Q 016385 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDD 335 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v~d~ 335 (390)
..++|+++++.++.-. ..+|-|+.+.+-..+.. ...|+.+.. .++.|||...|.+. + +.+..|.|.+|+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 3678999999988754 34688888865421111 122333332 67999999888764 3 3567899999997
Q ss_pred CCCC----CCceeEEEEEEccc----cCCCcee-eEEE
Q 016385 336 EGIQ----SSELIGCAQVRLCE----LEPGKVK-DVWL 364 (390)
Q Consensus 336 d~~~----~d~~lG~~~v~l~~----l~~~~~~-~~w~ 364 (390)
.... ....+|.+.++|-+ |..|... ..|.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW~ 121 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLWP 121 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCCChhhCCCEEEEEEc
Confidence 6421 23569999999965 3445433 4564
No 137
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.76 E-value=0.28 Score=42.17 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=59.7
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCC---ceEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEEEEcC
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDE 336 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v~d~d 336 (390)
.++|+++++.++... ....+-|+.+.+--.+. ....|+.+..+.++.|||...|.+. + +.+..|.+.+|+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 678999999998752 23466777765431111 1234544444567999999888653 3 35678999999975
Q ss_pred CCC----------------CCceeEEEEEEccc
Q 016385 337 GIQ----------------SSELIGCAQVRLCE 353 (390)
Q Consensus 337 ~~~----------------~d~~lG~~~v~l~~ 353 (390)
... ++..||.+.++|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEc
Confidence 422 24699999999865
No 138
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.65 E-value=0.27 Score=41.46 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=58.9
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCC---CceEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEEEEcC
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDE 336 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v~d~d 336 (390)
.++|++....+....+ ....+-|+.+.+-..+ .....|.......++.|||...|.+. + +.+..|.+.+|+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4667777777765411 2345667766553211 12334444443468999999888753 2 35668999999987
Q ss_pred CCC--CCceeEEEEEEcccc
Q 016385 337 GIQ--SSELIGCAQVRLCEL 354 (390)
Q Consensus 337 ~~~--~d~~lG~~~v~l~~l 354 (390)
..+ ++..+|.+.+++-+-
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 543 468999999999663
No 139
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=94.63 E-value=0.067 Score=53.16 Aligned_cols=61 Identities=25% Similarity=0.467 Sum_probs=51.5
Q ss_pred ceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCC----CCCCceeEEEEEEccccCCC
Q 016385 297 KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG----IQSSELIGCAQVRLCELEPG 357 (390)
Q Consensus 297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~----~~~d~~lG~~~v~l~~l~~~ 357 (390)
...+|.++.+.+||.|.+.|.+.......|.++++++|.+. ...++|+|+++..+..+...
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS 105 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence 35689999999999999999888877788999999999764 35678999999999887543
No 140
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.46 E-value=0.096 Score=48.18 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=58.8
Q ss_pred cceeEEEEEEeeecCCccccC--CCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcC
Q 016385 259 KPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE 336 (390)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d 336 (390)
...|.|.+++..+++|+-... .-.-+-||++..+ .....+|.+.....--.|.|+|+.++.+. ..+.+-||.|+
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d--rqh~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW~ 123 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD--RQHPARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSWP 123 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeec--ccCccccccccCCCCccchhhceeecccc--eeeeEEEeecC
Confidence 467999999999999974321 2346899999876 23345566665666678999999988644 37888999988
Q ss_pred CCCCCce
Q 016385 337 GIQSSEL 343 (390)
Q Consensus 337 ~~~~d~~ 343 (390)
.-.++++
T Consensus 124 pq~RHKL 130 (442)
T KOG1452|consen 124 PQRRHKL 130 (442)
T ss_pred chhhccc
Confidence 7656654
No 141
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.39 E-value=2.2 Score=35.03 Aligned_cols=103 Identities=15% Similarity=0.220 Sum_probs=62.6
Q ss_pred eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeec-cCCCCCCeeeeEEEEEEec--------CCCCEEEEEE
Q 016385 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT-INNDLNPIWNEHFEFIVED--------ESTQHLVVRI 332 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v-~~~~~nP~w~e~f~f~v~~--------~~~~~L~v~v 332 (390)
=.+.+++.+..+++. .....|+....+.......+|+. ...+..-.|||.|.+.+.- .+...+.+.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 356788888888774 12233344433321111233333 2345568999999887531 1344688999
Q ss_pred EEcCCCCCCceeEEEEEEccccCCC--ceeeEEEEccc
Q 016385 333 YDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVK 368 (390)
Q Consensus 333 ~d~d~~~~d~~lG~~~v~l~~l~~~--~~~~~w~~L~~ 368 (390)
+.....++...+|.+.++|.+.... .....-++|..
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~ 120 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK 120 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc
Confidence 9875433346999999999998763 34555566653
No 142
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.95 E-value=0.25 Score=41.81 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=51.4
Q ss_pred CCCCcEEEEEEecCCCc---eEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEEEEcCCCCCCceeEEEEEEcccc
Q 016385 281 GKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354 (390)
Q Consensus 281 g~~dpyv~v~~~~~~~~---~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l 354 (390)
..+|-|+.+.+-..+.. ...|+.+.-+..+.|||...|.+. + +.+..|.+++||.+..++...+|.+.+++-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45778887766422211 224444444567889999888764 3 35678999999988666678999999999653
No 143
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=93.04 E-value=0.39 Score=41.23 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=61.2
Q ss_pred eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCCc---eEeeeccC----CCCCCeeeeEEEEEEe--c-CCCCEEEEE
Q 016385 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTIN----NDLNPIWNEHFEFIVE--D-ESTQHLVVR 331 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~v~~----~~~nP~w~e~f~f~v~--~-~~~~~L~v~ 331 (390)
..+.|+|.++.+++........|-|+.+.+--.+.. ...|+... -...+.|||...|.+. + +.+..|.+.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 457889999999886554445788888765421111 12333211 1235779998888763 2 356689999
Q ss_pred EEEcCCCC---------CCceeEEEEEEcccc
Q 016385 332 IYDDEGIQ---------SSELIGCAQVRLCEL 354 (390)
Q Consensus 332 v~d~d~~~---------~d~~lG~~~v~l~~l 354 (390)
+|+....+ .+..+|.+.++|-+-
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99976543 457999999999663
No 144
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.01 E-value=2.1 Score=32.32 Aligned_cols=66 Identities=20% Similarity=0.282 Sum_probs=48.1
Q ss_pred CCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEcccc
Q 016385 281 GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354 (390)
Q Consensus 281 g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l 354 (390)
|-++-.+++.++ +..+..|.-.. -.+..|++.|.+.+. .+.+|.|.||-.|. ..+-|...+.|++.
T Consensus 7 ~~~eV~avLklD--n~~VgqT~Wk~-~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 7 GCSEVSAVLKLD--NTVVGQTQWKP-KSNQAWDQSFTLELE--RSRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cccceEEEEEEc--CeEEeeccccc-cccccccceeEEEee--cccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 336778888886 34566666543 357899999999986 35689999998764 45777778888773
No 145
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=91.85 E-value=2.3 Score=35.12 Aligned_cols=56 Identities=18% Similarity=0.390 Sum_probs=40.5
Q ss_pred EeeeccCCC-CCCeeeeEEEEEEe--c-CCCCEEEEEEEEcCCCCCC----ceeEEEEEEcccc
Q 016385 299 KKSKTINND-LNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEGIQSS----ELIGCAQVRLCEL 354 (390)
Q Consensus 299 ~kT~v~~~~-~nP~w~e~f~f~v~--~-~~~~~L~v~v~d~d~~~~d----~~lG~~~v~l~~l 354 (390)
..|+...-+ .++.|||...|.+. + +.+..|.+.+|+.+..... ..||.+.+++-+.
T Consensus 22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 355555444 79999999888864 3 3567999999998765444 6999999999775
No 146
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=91.58 E-value=1.2 Score=38.64 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=35.5
Q ss_pred ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCCCC-C--CceeEEEEEEccc
Q 016385 297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ-S--SELIGCAQVRLCE 353 (390)
Q Consensus 297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~~~-~--d~~lG~~~v~l~~ 353 (390)
..+.|.+...+.+|.|+|+|.+.++.. .+..|.|++++...-. + ...+|.+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 356778888889999999999888754 4668999999965422 1 2699999999976
No 147
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.01 E-value=2.2 Score=36.73 Aligned_cols=89 Identities=13% Similarity=0.194 Sum_probs=53.1
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCc---eEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEEEEcC
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDE 336 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v~d~d 336 (390)
.++|+|.++..+. .+......-|+.+.+-. +.+ ..+|.....+.++.|||...|.+. + +....|.|.+|+..
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4677787776332 22122233555554321 222 124444555667999998887754 3 35678999999963
Q ss_pred CCC----------------CCceeEEEEEEccc
Q 016385 337 GIQ----------------SSELIGCAQVRLCE 353 (390)
Q Consensus 337 ~~~----------------~d~~lG~~~v~l~~ 353 (390)
... ++..||.+.+.|-+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 89 APALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred cCcccccccccccccccccccceEEEEEEEEEc
Confidence 211 25688889999865
No 148
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=88.73 E-value=0.57 Score=49.31 Aligned_cols=85 Identities=12% Similarity=0.255 Sum_probs=68.3
Q ss_pred CCCcEEEEEEecCCCceEeeeccCCC-CCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCCCcee
Q 016385 282 KSDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360 (390)
Q Consensus 282 ~~dpyv~v~~~~~~~~~~kT~v~~~~-~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~~~ 360 (390)
..++|+.+.+. .....+|..+.+. .+|.|++.|+........ .+.+++-+.+..+-...+|.+..+...+..+...
T Consensus 137 ~~e~Ylt~~l~--~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g-~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~ 213 (887)
T KOG1329|consen 137 TLENYLTVVLH--KARYRRTHVIYEFLENSRWSFSFDIGFAHKAG-YVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRI 213 (887)
T ss_pred hccchheeeec--hhhhhchhhhhcccccchhhhhcccccccccc-EEEEeecCCccccceeEEEEeccchhhhhccccc
Confidence 37899999886 2345566666666 789999999888877654 8888988888776578999999999999888888
Q ss_pred eEEEEcccc
Q 016385 361 DVWLKLVKD 369 (390)
Q Consensus 361 ~~w~~L~~~ 369 (390)
+.|+++...
T Consensus 214 ~~~~~Il~~ 222 (887)
T KOG1329|consen 214 GGWFPILDN 222 (887)
T ss_pred cceeeeecc
Confidence 999998653
No 149
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=87.97 E-value=0.16 Score=52.30 Aligned_cols=89 Identities=16% Similarity=0.286 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHHhhhHHHH--HHHHHHHhHHHHHhhcC-CCccceEEEeEEecCCCCCeEeeEEEEecCC-CeEEEEEE
Q 016385 69 QKLTWLNHHLEKLWPYVNEA--ASELIKSSVEPVLEQYR-PFILSSLKFSKFTLGTVAPQFTGVSIIEDGG-SGVTMELE 144 (390)
Q Consensus 69 E~~~WlN~~l~~~Wp~~~~~--~~~~i~~~l~~~l~~~~-p~~l~~i~~~~~~lG~~~P~i~~ir~~~~~~-~~v~le~~ 144 (390)
+.+-|+|.++.++..-+.+. ..+...+.++.++...+ |++++.+-..+++-|+.||.|++.++..... +...++.|
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~d 413 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEID 413 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccc
Confidence 45899999999998665432 66777888888888765 7899999999999999999999999998754 44568999
Q ss_pred EEEeeCceEEEEE
Q 016385 145 MQWDANSSIILAI 157 (390)
Q Consensus 145 ~~~~~~~~i~l~v 157 (390)
+.|.||..+.+..
T Consensus 414 i~y~~d~~~~i~~ 426 (795)
T KOG2238|consen 414 IEYRGDLTIIIET 426 (795)
T ss_pred eeecccccccccc
Confidence 9999986655544
No 150
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=87.54 E-value=1.8 Score=37.52 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=42.3
Q ss_pred ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCCCC--CCceeEEEEEEcc
Q 016385 297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ--SSELIGCAQVRLC 352 (390)
Q Consensus 297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~~~--~d~~lG~~~v~l~ 352 (390)
..++|.+...+.+|.|+|++.+.++.. ....|.|++++..... .....|.+.+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 367888888899999999998887643 5668899888754321 1267999999983
No 151
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=86.64 E-value=8.3 Score=33.44 Aligned_cols=57 Identities=14% Similarity=0.278 Sum_probs=42.4
Q ss_pred ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCC--C-------CCCceeEEEEEEccc
Q 016385 297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEG--I-------QSSELIGCAQVRLCE 353 (390)
Q Consensus 297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~--~-------~~d~~lG~~~v~l~~ 353 (390)
....|.+...+.+|.|.|++.+.+.-. ....|.|+.|+.+- . .....+|.+.+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 356788888889999999988776533 56689999998641 1 123579999999854
No 152
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=86.50 E-value=0.37 Score=38.62 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHhhheeeehhhhhhHhh
Q 016385 4 FFGLVVGLVVGLGIIVGFVRSENARSKLR 32 (390)
Q Consensus 4 ~~g~~~g~~~gl~l~~~~~~~~~~~~~~~ 32 (390)
+.|+++|.++|+++..+++.|..+|.++|
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56777777777777777766666555444
No 153
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=86.41 E-value=8.8 Score=32.74 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=58.4
Q ss_pred CCCcEEEEEEecCCCceEeeeccC--CCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEccccCCC--
Q 016385 282 KSDPYAVLFVRPLPEKTKKSKTIN--NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG-- 357 (390)
Q Consensus 282 ~~dpyv~v~~~~~~~~~~kT~v~~--~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~-- 357 (390)
+..-|+++.+. ++.+.+|+... .+..-.++|.|.+.+.... +.+.+++|.... ..+..|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N--~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P-esi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~ 111 (168)
T PF15625_consen 36 KTRYYIKLFFN--DKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP-ESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTS 111 (168)
T ss_pred heeEEEEEEEC--CEEEEeeeeEecCCCeEEeccCEEEEEEecCC-CEEEEEEEEccC-ccceEEEEEEeeCCCCccccc
Confidence 45678888886 45566666543 3444567899999997754 489999999887 5789999999998554322
Q ss_pred ce--eeEEEEcccc
Q 016385 358 KV--KDVWLKLVKD 369 (390)
Q Consensus 358 ~~--~~~w~~L~~~ 369 (390)
.. ...|+.....
T Consensus 112 ~~~~~~~~~eFsS~ 125 (168)
T PF15625_consen 112 TDNVPLEEYEFSSD 125 (168)
T ss_pred ccCCceEeEEEcCC
Confidence 11 4566666543
No 154
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=86.15 E-value=4 Score=35.62 Aligned_cols=56 Identities=21% Similarity=0.244 Sum_probs=42.1
Q ss_pred ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCCC----CCCceeEEEEEEcc
Q 016385 297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI----QSSELIGCAQVRLC 352 (390)
Q Consensus 297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~~----~~d~~lG~~~v~l~ 352 (390)
..++|-+...+.+|.|+|++.+.++.. ....|.|++++.... ......|.+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 367788888889999999998887643 566899999875421 12357999999984
No 155
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=84.73 E-value=5.6 Score=31.18 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=42.4
Q ss_pred CceEeeeccCCCCCCeeeeEEEEEEecC-------CCCEEEEEEEEcCCCCCCceeEEEEEEccccCCCc--eeeEEEEc
Q 016385 296 EKTKKSKTINNDLNPIWNEHFEFIVEDE-------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK--VKDVWLKL 366 (390)
Q Consensus 296 ~~~~kT~v~~~~~nP~w~e~f~f~v~~~-------~~~~L~v~v~d~d~~~~d~~lG~~~v~l~~l~~~~--~~~~w~~L 366 (390)
-+.+.|.++. +.+|.+|-+-.+.|... .+..+.++++..-. ...+.+|.+++++..+.+.. .......+
T Consensus 10 fEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~~i~~~~~l 87 (107)
T PF11618_consen 10 FETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGERIHGSATL 87 (107)
T ss_dssp ---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S--EEEEEEE
T ss_pred eeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCceEEEEEEE
Confidence 4567788776 78999998888877533 45588999998764 34789999999999985332 23344445
Q ss_pred ccccccCCCCeeeeEEEEE
Q 016385 367 VKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 367 ~~~~~~~~~~~~~G~i~l~ 385 (390)
.+. +++.-|.|...
T Consensus 88 ~g~-----~~~~~g~l~y~ 101 (107)
T PF11618_consen 88 VGV-----SGEDFGTLEYW 101 (107)
T ss_dssp -BS-----SS-TSEEEEEE
T ss_pred ecc-----CCCeEEEEEEE
Confidence 432 33466877755
No 156
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=84.36 E-value=5.7 Score=30.61 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=43.3
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCc---eEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEEEEcCC
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEG 337 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v~d~d~ 337 (390)
+.+.+...++.........++-|+.+.+-..+.. ...|+.+.-...+.|||...|.+. + +.+..|.+.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4455555555543332223578888865421211 123444444556899998888653 3 356789999999653
No 157
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=82.42 E-value=4.1 Score=35.12 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=40.0
Q ss_pred EeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCCC-----CCCceeEEEEEEccc
Q 016385 299 KKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI-----QSSELIGCAQVRLCE 353 (390)
Q Consensus 299 ~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~~-----~~d~~lG~~~v~l~~ 353 (390)
++|-+..+ .+|.|+|++.+.++.. ....|.|++++.+.- .....+|.+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444444 8999999998888543 467899999996532 346789999999965
No 158
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=82.11 E-value=4.2 Score=35.07 Aligned_cols=56 Identities=13% Similarity=0.228 Sum_probs=42.1
Q ss_pred ceEeeeccCCCCCCeeeeEEEEEEecC--CCCEEEEEEEEcCCCC------CCceeEEEEEEcc
Q 016385 297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ------SSELIGCAQVRLC 352 (390)
Q Consensus 297 ~~~kT~v~~~~~nP~w~e~f~f~v~~~--~~~~L~v~v~d~d~~~------~d~~lG~~~v~l~ 352 (390)
....|.+...+.+|.|+|++.+.++-. ....|.|++++.+-.. ....+|.+.+||-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 456788888899999999998877643 5568999999844211 1357999999984
No 159
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=67.81 E-value=81 Score=30.02 Aligned_cols=107 Identities=13% Similarity=0.199 Sum_probs=66.8
Q ss_pred EEEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeee--eEEEEEEecCCCCEEEEEEEEcCCCCC
Q 016385 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN--EHFEFIVEDESTQHLVVRIYDDEGIQS 340 (390)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~--e~f~f~v~~~~~~~L~v~v~d~d~~~~ 340 (390)
.|-|.+.+-.++. -....|+.+..+ ....+|..+.-+..-.-+ +.....+.. .+..|++.+|-..- .+
T Consensus 59 ~LLVeI~EI~~i~-----k~khiyIef~~G---r~d~TT~~IpTsKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKKkL-vk 128 (508)
T PTZ00447 59 YLLVKINEIFNIN-----KYKHIYIIFSTD---KYDFTTDEIPTNKKNRIHIDQRVDIKIRQ-CDETLRVDLFTTKL-TK 128 (508)
T ss_pred eEEEEehhhhccc-----cceeEEEEEEcC---ceEEEccccccCcCceEEEeeeeeeeeee-cCceEEEEEEeccc-cc
Confidence 3456665554433 234577777765 445555444322222222 323333433 34589999998664 46
Q ss_pred CceeEEEEEEccc--cCCCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 341 SELIGCAQVRLCE--LEPGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 341 d~~lG~~~v~l~~--l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
...||.+.+.++. +...-.+..||-+.+ ++...++|.+|
T Consensus 129 k~hIgdI~InIn~dIIdk~FPKnkWy~c~k------DGq~~cRIqLS 169 (508)
T PTZ00447 129 KVHIGQIKIDINASVISKSFPKNEWFVCFK------DGQEICKVQMS 169 (508)
T ss_pred eeEEEEEEecccHHHHhccCCccceEEEec------CCceeeeEEEE
Confidence 7899999999865 345567899999954 67788999999
No 160
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=65.03 E-value=4.6 Score=29.24 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=16.4
Q ss_pred chhhHHHHHHHHHHhhheee
Q 016385 3 FFFGLVVGLVVGLGIIVGFV 22 (390)
Q Consensus 3 ~~~g~~~g~~~gl~l~~~~~ 22 (390)
|++|+++|.++|.++.+++.
T Consensus 1 F~~g~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFA 20 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 78899999999988877665
No 161
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=63.19 E-value=85 Score=25.85 Aligned_cols=84 Identities=15% Similarity=0.250 Sum_probs=60.1
Q ss_pred EEEEEeeecCCccccCCCCCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEe-----c-------CCCCEEEEE
Q 016385 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE-----D-------ESTQHLVVR 331 (390)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~-----~-------~~~~~L~v~ 331 (390)
|+|+-+.|-+..- ..+.|-|..+++. ++.++|+.....---.++|.|.|.=. + .+.+.++++
T Consensus 4 L~i~aVTCPGv~L---~~~~~vyL~v~~l---g~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iE 77 (140)
T PF14909_consen 4 LEIHAVTCPGVWL---CDKGDVYLSVCIL---GQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIE 77 (140)
T ss_pred EEEEEEecCCeEe---CCCCCEEEEEEEc---ccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEE
Confidence 5677777777542 3467899999987 67788876655444566888888632 1 256788999
Q ss_pred EEEcCCCCCCceeEEEEEEcccc
Q 016385 332 IYDDEGIQSSELIGCAQVRLCEL 354 (390)
Q Consensus 332 v~d~d~~~~d~~lG~~~v~l~~l 354 (390)
++...... .+.|+..+-+.+++
T Consensus 78 LiQl~~~~-g~iLA~ye~n~rDf 99 (140)
T PF14909_consen 78 LIQLVPPA-GEILAYYEENTRDF 99 (140)
T ss_pred EEEEeCCC-CcEEEEEeccccce
Confidence 99876543 77888888888776
No 162
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=62.60 E-value=5.2 Score=30.12 Aligned_cols=45 Identities=16% Similarity=0.369 Sum_probs=36.3
Q ss_pred CCCCCCccccCCcccHHHHHHHHHHHhhhHHHHHHHHHHHhHHHH
Q 016385 56 AEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPV 100 (390)
Q Consensus 56 ~~~~p~w~~~~~~E~~~WlN~~l~~~Wp~~~~~~~~~i~~~l~~~ 100 (390)
.+++|+|+...|..--.-.|++....|.+.+.+++-.-..+|.++
T Consensus 36 LGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~Pv~~gsi~~i 80 (108)
T KOG4092|consen 36 LGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYINPVKKGSISGI 80 (108)
T ss_pred ecccHHHHHhccCChHHHHHHHHHHHHHHHhheechhhcCchhHH
Confidence 578999999999998999999999999999888774333444443
No 163
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=61.44 E-value=4.5 Score=42.76 Aligned_cols=89 Identities=18% Similarity=0.183 Sum_probs=62.5
Q ss_pred ccccceeEEEEEEeeecCCccccCCCCCCcEEEEEEecCC--CceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEE
Q 016385 256 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY 333 (390)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~ 333 (390)
......|.+++.+.+|..+.. ....||...+...+ .-+.+|.++.++..|.||+.++..+. +.|.+++..+
T Consensus 753 eSpl~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~--~sqS~r~~~~ 825 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVI--ESQSSRLEKT 825 (1112)
T ss_pred cCcccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchh--hccccchhhh
Confidence 334578999999999998863 35678877765332 34678999999999999998887765 4556667776
Q ss_pred EcCC----------CCCCceeEEEEEEc
Q 016385 334 DDEG----------IQSSELIGCAQVRL 351 (390)
Q Consensus 334 d~d~----------~~~d~~lG~~~v~l 351 (390)
+.+. ...+...|+..+.+
T Consensus 826 ek~~~~~k~~~~~~~~~~~~~~~~~~~l 853 (1112)
T KOG4269|consen 826 EKSTPVEKLIDSHSQNSQNEEKRSRMKL 853 (1112)
T ss_pred cccchHHHhhhccchhhccccccccccc
Confidence 6542 23345566666555
No 164
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=58.26 E-value=16 Score=29.63 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHhhheee
Q 016385 4 FFGLVVGLVVGLGIIVGFV 22 (390)
Q Consensus 4 ~~g~~~g~~~gl~l~~~~~ 22 (390)
++||++|+++|.++.-+..
T Consensus 3 ~i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5788888888877754443
No 165
>PF15179 Myc_target_1: Myc target protein 1
Probab=57.25 E-value=4.2 Score=34.60 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=18.9
Q ss_pred CcchhhHHHHHHHHHHhhheeeeh
Q 016385 1 MGFFFGLVVGLVVGLGIIVGFVRS 24 (390)
Q Consensus 1 ~~~~~g~~~g~~~gl~l~~~~~~~ 24 (390)
|+|...+++|+++|.++++++.+.
T Consensus 23 laF~vSm~iGLviG~li~~Lltwl 46 (197)
T PF15179_consen 23 LAFCVSMAIGLVIGALIWALLTWL 46 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888999998888877654
No 166
>PF15102 TMEM154: TMEM154 protein family
Probab=54.21 E-value=6 Score=32.61 Aligned_cols=7 Identities=29% Similarity=0.733 Sum_probs=4.4
Q ss_pred HHHHHHH
Q 016385 71 LTWLNHH 77 (390)
Q Consensus 71 ~~WlN~~ 77 (390)
=.|+|+.
T Consensus 131 dkwm~s~ 137 (146)
T PF15102_consen 131 DKWMNSM 137 (146)
T ss_pred HhHHHhh
Confidence 3577764
No 167
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=52.29 E-value=19 Score=25.21 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHhhhe
Q 016385 4 FFGLVVGLVVGLGIIVG 20 (390)
Q Consensus 4 ~~g~~~g~~~gl~l~~~ 20 (390)
+..|++|+++|.++.+.
T Consensus 25 l~~f~~G~llg~l~~~~ 41 (68)
T PF06305_consen 25 LIAFLLGALLGWLLSLP 41 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566677666655443
No 168
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=51.87 E-value=1.5e+02 Score=25.13 Aligned_cols=92 Identities=16% Similarity=0.314 Sum_probs=58.4
Q ss_pred EEeeecCCccccCCCCCCcEEEEEEec-------CCCc-eEeeeccC-----CCCCCeeeeEEEEEEec--CCC-CEEEE
Q 016385 267 KLVQAKGLTNKDLIGKSDPYAVLFVRP-------LPEK-TKKSKTIN-----NDLNPIWNEHFEFIVED--EST-QHLVV 330 (390)
Q Consensus 267 ~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~~-~~kT~v~~-----~~~nP~w~e~f~f~v~~--~~~-~~L~v 330 (390)
.|.+|.+.. ..+-||+..+.- .+.. ...|.+.. ++..-.||..|++.... +.. ..|.+
T Consensus 7 ~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 467777543 356788887742 1222 34455432 24456899887766543 322 58999
Q ss_pred EEEEcCCCCCCceeEEEEEEccccCCCc---eeeEEEE
Q 016385 331 RIYDDEGIQSSELIGCAQVRLCELEPGK---VKDVWLK 365 (390)
Q Consensus 331 ~v~d~d~~~~d~~lG~~~v~l~~l~~~~---~~~~w~~ 365 (390)
+||..|..+++...|...+.+-. .+|. ....|-|
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~lP~-~pG~h~~~v~~wrP 117 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHLPT-QPGRHEVEVPTWRP 117 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEeCC-CCceEEEEEEEEee
Confidence 99999999999999887776632 3442 2346766
No 169
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=50.08 E-value=2.5e+02 Score=27.88 Aligned_cols=87 Identities=22% Similarity=0.324 Sum_probs=51.3
Q ss_pred cCCCCCeEeeEEEEecCCCeEEEEEEEEEeeCceEEEEEEeecCeeeeEEEEEEEEEEEEEEEEeeCCcCCCccceEEEE
Q 016385 119 LGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYS 198 (390)
Q Consensus 119 lG~~~P~i~~ir~~~~~~~~v~le~~~~~~~~~~i~l~v~~~~g~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~~ 198 (390)
.|..--+|.++++|. .++.+++.+++.=. +.|++.+.-+|..+..-- +++
T Consensus 280 ~~~~~v~v~~v~v~g-~~~rl~i~~~~~g~-------------------------~~G~i~l~G~P~yD~~~~----~l~ 329 (427)
T PF14356_consen 280 SGGKKVTVKSVSVYG-SGDRLVIALDVTGS-------------------------LNGTIYLSGRPVYDPATQ----TLR 329 (427)
T ss_pred CCCceEEEEEEEEEe-cCCcEEEEEEEEEE-------------------------EEEEEEEEEEEEECCCCC----EEE
Confidence 777777888888887 55555544333322 556666665554443221 233
Q ss_pred eccceeEEEEEEEcccccccCCCc-HHHHHHHHHHHhhccccCCc
Q 016385 199 LREKKKLDFKLKVVGGDISTIPGL-SDSIEATIHDAIEDSITWPV 242 (390)
Q Consensus 199 f~~~P~l~f~l~~~g~~~~~iP~l-~~~i~~~i~~~i~~~~v~P~ 242 (390)
| .++||++...+. +-+. .-+.+..|++.|++.++.|-
T Consensus 330 l---~dld~~~~t~~~----l~~~a~wl~~~~i~~~i~~~~~~~l 367 (427)
T PF14356_consen 330 L---EDLDFDLDTKNF----LLKTAAWLLHGRIRKAIEEKLVFDL 367 (427)
T ss_pred E---EeeEEEecccch----HHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 3 367777765432 2222 34778888888888876663
No 170
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.12 E-value=8.5 Score=30.87 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=16.8
Q ss_pred cchhhHHHHHHHHHHhhheeeehhhhhhH
Q 016385 2 GFFFGLVVGLVVGLGIIVGFVRSENARSK 30 (390)
Q Consensus 2 ~~~~g~~~g~~~gl~l~~~~~~~~~~~~~ 30 (390)
|.++|.+.|++..+++..+++++ .+++.
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR-~~Kk~ 95 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRR-LRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HS---
T ss_pred ehhHHHHHHHHHHHHHHHHHHHH-HhccC
Confidence 57899999996655555555544 44444
No 171
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=43.18 E-value=7.1 Score=27.27 Aligned_cols=21 Identities=29% Similarity=0.448 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHhhheee
Q 016385 2 GFFFGLVVGLVVGLGIIVGFV 22 (390)
Q Consensus 2 ~~~~g~~~g~~~gl~l~~~~~ 22 (390)
|.+-|.++|+++.++|.++++
T Consensus 13 avIaG~Vvgll~ailLIlf~i 33 (64)
T PF01034_consen 13 AVIAGGVVGLLFAILLILFLI 33 (64)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555666665555554443
No 172
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.81 E-value=4.7 Score=41.55 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=38.1
Q ss_pred CCCcEEEEEEecCCCceEeeeccCCCCCCeeeeEEEEEEecCCCCEEEEEEEEcCCCCCC
Q 016385 282 KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (390)
Q Consensus 282 ~~dpyv~v~~~~~~~~~~kT~v~~~~~nP~w~e~f~f~v~~~~~~~L~v~v~d~d~~~~d 341 (390)
.-+||+.+.+.. .+...+.+.+.+.+|.|+|+|...+... ..+.+.++.......+
T Consensus 27 al~~y~~v~vk~--~~~~~~~~~~~~~~~~~~~~F~~~v~~~--~~~~i~v~~~~~~~~~ 82 (694)
T KOG0694|consen 27 ALQPYLAVELKV--KQGAENMTKVELRIPELRETFHVEVVAG--GAKNIIVLLKSPDPKA 82 (694)
T ss_pred hhhhhheeccce--eecccccCCCCCCCchhhhheeeeeecC--CceEEEEEecCCcchh
Confidence 457898888752 2223344467889999999999997643 4677888876543333
No 173
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=42.44 E-value=93 Score=27.28 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHhhheeeehhhhhh
Q 016385 4 FFGLVVGLVVGLGIIVGFVRSENARS 29 (390)
Q Consensus 4 ~~g~~~g~~~gl~l~~~~~~~~~~~~ 29 (390)
.+|.++|+++|+.+...|-.|...+.
T Consensus 4 ~vg~l~al~laf~~~~~~~~~~~a~~ 29 (209)
T PF14023_consen 4 VVGVLFALLLAFTISSAWSRYDNARQ 29 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888889999888888876655443
No 174
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=40.63 E-value=20 Score=25.86 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=13.8
Q ss_pred cchhhHHHHHHHHHHhhh
Q 016385 2 GFFFGLVVGLVVGLGIIV 19 (390)
Q Consensus 2 ~~~~g~~~g~~~gl~l~~ 19 (390)
||++|.++|.++|+++.=
T Consensus 4 g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 4 GFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 678888888888887654
No 175
>PF14851 FAM176: FAM176 family
Probab=38.34 E-value=17 Score=30.34 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=18.6
Q ss_pred chhhHHHHHHHHHHhhheeeeh
Q 016385 3 FFFGLVVGLVVGLGIIVGFVRS 24 (390)
Q Consensus 3 ~~~g~~~g~~~gl~l~~~~~~~ 24 (390)
|++|+.+|+++.|++++.-+..
T Consensus 26 Fv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 26 FVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhhee
Confidence 7899999999999998776654
No 176
>PRK11677 hypothetical protein; Provisional
Probab=38.08 E-value=58 Score=26.63 Aligned_cols=17 Identities=35% Similarity=0.639 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHhhhe
Q 016385 4 FFGLVVGLVVGLGIIVG 20 (390)
Q Consensus 4 ~~g~~~g~~~gl~l~~~ 20 (390)
+.||++|+++|.++.-+
T Consensus 7 ~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 56777777777776543
No 177
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=37.91 E-value=18 Score=26.94 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=13.3
Q ss_pred cchhhHHHHHHHHHHhhheeeehhhhhhHhh
Q 016385 2 GFFFGLVVGLVVGLGIIVGFVRSENARSKLR 32 (390)
Q Consensus 2 ~~~~g~~~g~~~gl~l~~~~~~~~~~~~~~~ 32 (390)
|+.++.+.|+++.+.+ ++|...+.+|+++|
T Consensus 34 gm~~lvI~~iFil~Vi-lwfvCC~kRkrsRr 63 (94)
T PF05393_consen 34 GMWFLVICGIFILLVI-LWFVCCKKRKRSRR 63 (94)
T ss_pred chhHHHHHHHHHHHHH-HHHHHHHHhhhccC
Confidence 3344455555443333 44555544443333
No 178
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=37.17 E-value=11 Score=26.34 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=0.6
Q ss_pred chhhHHHHHHHHHHhhheeeehhhhhhHhh
Q 016385 3 FFFGLVVGLVVGLGIIVGFVRSENARSKLR 32 (390)
Q Consensus 3 ~~~g~~~g~~~gl~l~~~~~~~~~~~~~~~ 32 (390)
.+-|++.|.++|+++.++++.+..+|-++|
T Consensus 10 vlaavIaG~Vvgll~ailLIlf~iyR~rkk 39 (64)
T PF01034_consen 10 VLAAVIAGGVVGLLFAILLILFLIYRMRKK 39 (64)
T ss_dssp ---------------------------S--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999998888888886554
No 179
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=34.65 E-value=23 Score=24.98 Aligned_cols=15 Identities=40% Similarity=0.835 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHhhh
Q 016385 5 FGLVVGLVVGLGIIV 19 (390)
Q Consensus 5 ~g~~~g~~~gl~l~~ 19 (390)
+|++-|+++|+++.+
T Consensus 50 IGILYGlVIGlil~~ 64 (75)
T COG4064 50 IGILYGLVIGLILCM 64 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555555555544
No 180
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=34.60 E-value=45 Score=34.16 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=19.6
Q ss_pred CCCCc-cccCCcccHHHHHHHHHHHhh
Q 016385 58 FYPSW-VVFSHRQKLTWLNHHLEKLWP 83 (390)
Q Consensus 58 ~~p~w-~~~~~~E~~~WlN~~l~~~Wp 83 (390)
++|-- +.+.+.-.++|.|..+..++.
T Consensus 83 nmPiGii~~~e~~~veW~Npf~~~if~ 109 (655)
T COG3887 83 NMPIGIILFNETNKVEWVNPFASKIFN 109 (655)
T ss_pred hCCceEEEEcCCCceEEecHHHHHhcC
Confidence 35543 446778899999999998875
No 181
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=34.56 E-value=22 Score=29.30 Aligned_cols=21 Identities=24% Similarity=0.608 Sum_probs=16.8
Q ss_pred cchhhHHHHHHHHHHhhheee
Q 016385 2 GFFFGLVVGLVVGLGIIVGFV 22 (390)
Q Consensus 2 ~~~~g~~~g~~~gl~l~~~~~ 22 (390)
.+++|+++|++.|++.++++.
T Consensus 91 dlL~G~liGff~g~~~~~~L~ 111 (140)
T PF13373_consen 91 DLLWGLLIGFFFGLFSLFWLL 111 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHh
Confidence 378999999999999866544
No 182
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=33.19 E-value=26 Score=24.87 Aligned_cols=16 Identities=44% Similarity=0.789 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHhhhe
Q 016385 5 FGLVVGLVVGLGIIVG 20 (390)
Q Consensus 5 ~g~~~g~~~gl~l~~~ 20 (390)
.|++-|+++|+.+++.
T Consensus 47 iGIlYG~v~Glii~~~ 62 (70)
T PF04210_consen 47 IGILYGLVIGLIIFII 62 (70)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555554443
No 183
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=31.50 E-value=46 Score=23.60 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHhhhe
Q 016385 5 FGLVVGLVVGLGIIVG 20 (390)
Q Consensus 5 ~g~~~g~~~gl~l~~~ 20 (390)
+|++.|+++|++-++.
T Consensus 36 IGvi~gi~~~~lt~lt 51 (68)
T PF04971_consen 36 IGVIGGIFFGLLTYLT 51 (68)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4677777766665543
No 184
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=31.47 E-value=34 Score=34.11 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=27.6
Q ss_pred chhhHHHHHHHHHHhhheeeehhhhhhHhhHHHHHHHH
Q 016385 3 FFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIA 40 (390)
Q Consensus 3 ~~~g~~~g~~~gl~l~~~~~~~~~~~~~~~~~~~~~~~ 40 (390)
+++.+-+|+++|+.+.++|+++++++.+.+.++.+++.
T Consensus 241 ~~~alp~g~l~sl~~~l~~l~~~rr~~sp~~rL~~Ai~ 278 (524)
T COG4943 241 LFLALPLGILISLLALLLWLRIRRRYLSPRRRLQRAIE 278 (524)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 35667789999999999999887766666555554443
No 185
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=30.27 E-value=22 Score=29.56 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=12.2
Q ss_pred cchhhHHHHHHHHHHhhheeee
Q 016385 2 GFFFGLVVGLVVGLGIIVGFVR 23 (390)
Q Consensus 2 ~~~~g~~~g~~~gl~l~~~~~~ 23 (390)
|...|+...+++++++++++.+
T Consensus 53 GvVVGVGg~ill~il~lvf~~c 74 (154)
T PF04478_consen 53 GVVVGVGGPILLGILALVFIFC 74 (154)
T ss_pred EEEecccHHHHHHHHHhheeEE
Confidence 4455655555666665554443
No 186
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=30.12 E-value=32 Score=24.97 Aligned_cols=14 Identities=50% Similarity=1.006 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHhhh
Q 016385 6 GLVVGLVVGLGIIV 19 (390)
Q Consensus 6 g~~~g~~~gl~l~~ 19 (390)
|++-|+++|+++++
T Consensus 51 GIlYG~viGlli~~ 64 (77)
T PRK01026 51 GILYGLVIGLLIVL 64 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 187
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=29.43 E-value=37 Score=26.92 Aligned_cols=21 Identities=29% Similarity=0.755 Sum_probs=17.8
Q ss_pred cchhhHHHHHHHHHHhhheee
Q 016385 2 GFFFGLVVGLVVGLGIIVGFV 22 (390)
Q Consensus 2 ~~~~g~~~g~~~gl~l~~~~~ 22 (390)
.||+|+++|.++|....+++.
T Consensus 6 ~~l~G~liGgiiGa~aaLL~A 26 (115)
T COG4980 6 DFLFGILIGGIIGAAAALLFA 26 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHhC
Confidence 689999999999998877664
No 188
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.06 E-value=31 Score=27.92 Aligned_cols=15 Identities=13% Similarity=0.230 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhhhee
Q 016385 7 LVVGLVVGLGIIVGF 21 (390)
Q Consensus 7 ~~~g~~~gl~l~~~~ 21 (390)
+++.+++.+++++++
T Consensus 4 l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 4 LFAIIIVAILLFLFL 18 (130)
T ss_pred eHHHHHHHHHHHHHH
Confidence 344444444444433
No 189
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=28.00 E-value=42 Score=23.83 Aligned_cols=13 Identities=46% Similarity=0.950 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHhh
Q 016385 6 GLVVGLVVGLGII 18 (390)
Q Consensus 6 g~~~g~~~gl~l~ 18 (390)
|++-|+++|++++
T Consensus 48 GIlYG~viGlli~ 60 (70)
T TIGR01149 48 GILYGLVIGLILF 60 (70)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 190
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=27.92 E-value=36 Score=20.72 Aligned_cols=17 Identities=41% Similarity=0.903 Sum_probs=9.9
Q ss_pred chhhHHHHH----HHHHHhhh
Q 016385 3 FFFGLVVGL----VVGLGIIV 19 (390)
Q Consensus 3 ~~~g~~~g~----~~gl~l~~ 19 (390)
+++|+++|+ ++|++...
T Consensus 5 lL~GiVLGlipvTl~GlfvaA 25 (37)
T CHL00008 5 LLFGIVLGLIPITLAGLFVTA 25 (37)
T ss_pred hhhhHHHHhHHHHHHHHHHHH
Confidence 455666654 56776544
No 191
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=27.84 E-value=50 Score=25.69 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=30.9
Q ss_pred CCCCCCccccCCcccHHHHHHHHHHHhhhHHHHHH
Q 016385 56 AEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAAS 90 (390)
Q Consensus 56 ~~~~p~w~~~~~~E~~~WlN~~l~~~Wp~~~~~~~ 90 (390)
..++|+|+...|..-...++.+-...|.+.++++.
T Consensus 36 LgELpsW~~rRd~sP~~~~~a~sR~~wry~~KYi~ 70 (104)
T PF10206_consen 36 LGELPSWLSRRDKSPSGIAGAFSRGYWRYQHKYIN 70 (104)
T ss_pred cchhHHHHhhccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 47899999999999899999999999998887755
No 192
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=26.87 E-value=37 Score=20.65 Aligned_cols=17 Identities=35% Similarity=0.747 Sum_probs=10.0
Q ss_pred chhhHHHHH----HHHHHhhh
Q 016385 3 FFFGLVVGL----VVGLGIIV 19 (390)
Q Consensus 3 ~~~g~~~g~----~~gl~l~~ 19 (390)
+++|+++|+ ++|++...
T Consensus 5 lL~GiVLGlipiTl~GlfvaA 25 (37)
T PRK00665 5 LLCGIVLGLIPVTLAGLFVAA 25 (37)
T ss_pred hhhhHHHHhHHHHHHHHHHHH
Confidence 456666664 56776543
No 193
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=26.85 E-value=1.2e+02 Score=22.02 Aligned_cols=25 Identities=12% Similarity=0.442 Sum_probs=20.7
Q ss_pred CEEEEEEEEcCCCCCCceeEEEEEE
Q 016385 326 QHLVVRIYDDEGIQSSELIGCAQVR 350 (390)
Q Consensus 326 ~~L~v~v~d~d~~~~d~~lG~~~v~ 350 (390)
....|++||.|....|+++++....
T Consensus 12 ~~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 12 KNVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCCEEEEEECCCCCCCceeEEEEEC
Confidence 4567999999987889999987764
No 194
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=26.29 E-value=3.8e+02 Score=22.29 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=48.0
Q ss_pred eEEEEEEeeecCCccccCCCCCCcEEEEEEecCCC----ceEeeeccC--CCCCCeeeeEEEEEEe--c-CCCCEEEEEE
Q 016385 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----KTKKSKTIN--NDLNPIWNEHFEFIVE--D-ESTQHLVVRI 332 (390)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----~~~kT~v~~--~~~nP~w~e~f~f~v~--~-~~~~~L~v~v 332 (390)
-.|.|+|.+.. +. |...-.|||+.+++...++ ..+.|.+.. .+..-.||...++... + +.+..+.+++
T Consensus 13 t~l~v~Iekig-lk--da~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~ 89 (147)
T PF14186_consen 13 TYLSVFIEKIG-LK--DASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEF 89 (147)
T ss_dssp -EEEEEEEEEE--T--TGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEE
T ss_pred ceEEEEEEEEE-EC--ChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEE
Confidence 35666665543 44 3334578999999863332 245566542 2333345544443322 1 2456788899
Q ss_pred EEcCCC-CCCceeEEEEEEccccCCCc
Q 016385 333 YDDEGI-QSSELIGCAQVRLCELEPGK 358 (390)
Q Consensus 333 ~d~d~~-~~d~~lG~~~v~l~~l~~~~ 358 (390)
.++... .+-...+.+-++++++..|.
T Consensus 90 kH~K~kk~k~S~kcw~fme~dei~~g~ 116 (147)
T PF14186_consen 90 KHYKPKKKKTSTKCWAFMELDEIKPGP 116 (147)
T ss_dssp EEEETTTTCEEEEEEEEEEGGG--SEE
T ss_pred EeeeccceeeeeeEEEEEEhhhccCCc
Confidence 886543 23345788889999998874
No 195
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=25.79 E-value=5.4e+02 Score=25.42 Aligned_cols=103 Identities=17% Similarity=0.311 Sum_probs=55.1
Q ss_pred CCCcEEEEEEecCCCceEeeeccCC-CCCC-e---eeeEEEEEEec------C-----CCCEEEEEEEEcCC-----C-C
Q 016385 282 KSDPYAVLFVRPLPEKTKKSKTINN-DLNP-I---WNEHFEFIVED------E-----STQHLVVRIYDDEG-----I-Q 339 (390)
Q Consensus 282 ~~dpyv~v~~~~~~~~~~kT~v~~~-~~nP-~---w~e~f~f~v~~------~-----~~~~L~v~v~d~d~-----~-~ 339 (390)
.+..||+|++...+.|...-..+.. +.+| . ---.|++.-.+ + ....|+|.||.-.. + .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 4578999999855444322222221 1111 1 11334443211 1 12579999998432 2 4
Q ss_pred CCceeEEEEEEcccc-CCCc---eeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 340 SSELIGCAQVRLCEL-EPGK---VKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 340 ~d~~lG~~~v~l~~l-~~~~---~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
+..+||.+.++++-- ..++ .+..|..+.+.... .+.....+||+.
T Consensus 115 ~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~-~~~~~~aeLHl~ 163 (460)
T PF06219_consen 115 SGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQG-SGKSPSAELHLV 163 (460)
T ss_pred cceEEEEEEEEeccccccCCeeEEEccceecCCCCCC-CCCCCcceEEEE
Confidence 568999999998632 2222 34789988653211 112245678775
No 196
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.35 E-value=79 Score=21.98 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=9.6
Q ss_pred chhhHHHHHHHHHHhhh
Q 016385 3 FFFGLVVGLVVGLGIIV 19 (390)
Q Consensus 3 ~~~g~~~g~~~gl~l~~ 19 (390)
|++|+++|.++++.-..
T Consensus 28 f~~G~llg~l~~~~~~~ 44 (68)
T PF06305_consen 28 FLLGALLGWLLSLPSRL 44 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666655555554
No 197
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=25.22 E-value=2.2e+02 Score=22.24 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=35.2
Q ss_pred CCCEEEEEEEEcCC---CCCCceeEEEEEEccccC--------------CCceeeEEEEcccccccCCCCeeeeEEEEE
Q 016385 324 STQHLVVRIYDDEG---IQSSELIGCAQVRLCELE--------------PGKVKDVWLKLVKDLDVQRDTKYRGQVRIK 385 (390)
Q Consensus 324 ~~~~L~v~v~d~d~---~~~d~~lG~~~v~l~~l~--------------~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~ 385 (390)
....|++.+++-.. .....++|.+.+++.+.. .......-|+|.. .++...|+|.+.
T Consensus 27 ~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~-----~~~~~~G~I~l~ 100 (112)
T PF14924_consen 27 SSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFD-----ENGNPVGEISLY 100 (112)
T ss_pred hCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeec-----CCCceeeeEEEE
Confidence 34567777766432 345679999999987652 1113344556643 245577988776
No 198
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.85 E-value=49 Score=24.08 Aligned_cols=6 Identities=33% Similarity=0.921 Sum_probs=2.9
Q ss_pred CCCCCc
Q 016385 57 EFYPSW 62 (390)
Q Consensus 57 ~~~p~w 62 (390)
.+-|.|
T Consensus 67 ae~P~w 72 (75)
T PF06667_consen 67 AEHPNW 72 (75)
T ss_pred CCCCCc
Confidence 444555
No 199
>PF12664 DUF3789: Protein of unknown function (DUF3789); InterPro: IPR024522 This family of functionally uncharacterised bacterial proteins are approximately 40 amino acids in length. They contain two completely conserved residues (V and C) that may be functionally important.
Probab=23.83 E-value=32 Score=20.80 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=16.8
Q ss_pred cchhhHHHHHHHHHHhhheee
Q 016385 2 GFFFGLVVGLVVGLGIIVGFV 22 (390)
Q Consensus 2 ~~~~g~~~g~~~gl~l~~~~~ 22 (390)
.+++|+.+|-.+|..+.+..+
T Consensus 4 ~~~l~~~~G~~~GVvlMCllq 24 (34)
T PF12664_consen 4 KDILGFSLGGMIGVVLMCLLQ 24 (34)
T ss_pred HHHHHHHccchHhHHHHHHHH
Confidence 367889999999988887654
No 200
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.59 E-value=4.5e+02 Score=22.18 Aligned_cols=42 Identities=10% Similarity=0.208 Sum_probs=29.2
Q ss_pred eeeeEEEEEEe--cCC-CCEEEEEEEEcCCCCCCceeEEEEEEcc
Q 016385 311 IWNEHFEFIVE--DES-TQHLVVRIYDDEGIQSSELIGCAQVRLC 352 (390)
Q Consensus 311 ~w~e~f~f~v~--~~~-~~~L~v~v~d~d~~~~d~~lG~~~v~l~ 352 (390)
.||-.++.... .+. =..+.+.||..|..++|...|...+++-
T Consensus 65 v~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 65 VINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred EEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEecC
Confidence 56654444332 221 2368899999999999999998887763
No 201
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=23.14 E-value=44 Score=20.48 Aligned_cols=17 Identities=35% Similarity=0.708 Sum_probs=9.7
Q ss_pred chhhHHHHH----HHHHHhhh
Q 016385 3 FFFGLVVGL----VVGLGIIV 19 (390)
Q Consensus 3 ~~~g~~~g~----~~gl~l~~ 19 (390)
+++|+++|+ ++|++...
T Consensus 5 lL~GiVlGli~vtl~Glfv~A 25 (37)
T PF02529_consen 5 LLSGIVLGLIPVTLAGLFVAA 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhHHHHHHHHHHHH
Confidence 455666654 56666543
No 202
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=22.50 E-value=41 Score=32.85 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=14.9
Q ss_pred cchhhHHHHHHHHHHhhhee
Q 016385 2 GFFFGLVVGLVVGLGIIVGF 21 (390)
Q Consensus 2 ~~~~g~~~g~~~gl~l~~~~ 21 (390)
||+.||++|++++++.+++.
T Consensus 69 gFfvaflvslVL~~l~~f~l 88 (429)
T PF12297_consen 69 GFFVAFLVSLVLTWLCFFLL 88 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67888888888887766543
No 203
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=21.91 E-value=44 Score=20.74 Aligned_cols=15 Identities=40% Similarity=0.908 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHhhh
Q 016385 5 FGLVVGLVVGLGIIV 19 (390)
Q Consensus 5 ~g~~~g~~~gl~l~~ 19 (390)
.|++.|.++|+.+..
T Consensus 6 IaIIv~V~vg~~iii 20 (38)
T PF02439_consen 6 IAIIVAVVVGMAIII 20 (38)
T ss_pred hhHHHHHHHHHHHHH
Confidence 345555555554433
No 204
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=21.09 E-value=61 Score=25.88 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=14.4
Q ss_pred cchhhHHHHHHHHHHhhh
Q 016385 2 GFFFGLVVGLVVGLGIIV 19 (390)
Q Consensus 2 ~~~~g~~~g~~~gl~l~~ 19 (390)
+|++||..|+.+|++-++
T Consensus 43 slL~Gi~~G~~vG~~~fl 60 (118)
T PF12597_consen 43 SLLYGIAGGFGVGGLRFL 60 (118)
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 578899999988887654
No 205
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=20.90 E-value=4e+02 Score=28.98 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=53.8
Q ss_pred eeEEEEEEeeecCCccccCCCCCCcEEEEEEe-cCCCc----eEeeeccCCCCCCeeeeEEEEEEe--c-CCCCEEEEEE
Q 016385 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR-PLPEK----TKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRI 332 (390)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~~~~~----~~kT~v~~~~~nP~w~e~f~f~v~--~-~~~~~L~v~v 332 (390)
..-++|+++++.++. .....|-++.+..+ -.+.+ ...|+-+....+|.||+..+|++. + |....|.+.+
T Consensus 342 ~~~frI~l~~is~~n---~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i 418 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVN---LPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAI 418 (1076)
T ss_pred CCceEEEEeeccccC---CCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeee
Confidence 345778888887654 22344566666543 11222 233444555789999998888765 3 3456778888
Q ss_pred EEcC----------------CCCCCceeEEEEEEccc
Q 016385 333 YDDE----------------GIQSSELIGCAQVRLCE 353 (390)
Q Consensus 333 ~d~d----------------~~~~d~~lG~~~v~l~~ 353 (390)
|.-. .-+.+-.+|.+.+.+-+
T Consensus 419 ~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD 455 (1076)
T KOG0904|consen 419 YAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFD 455 (1076)
T ss_pred eEeechhccccccchhhhhccccccCceEEEeeeeee
Confidence 7641 11234577777777754
No 206
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.81 E-value=74 Score=24.86 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=8.4
Q ss_pred chhhHHHHHHHHHHh
Q 016385 3 FFFGLVVGLVVGLGI 17 (390)
Q Consensus 3 ~~~g~~~g~~~gl~l 17 (390)
|+.|+++|+++|.++
T Consensus 52 fIsGilVGa~iG~ll 66 (116)
T COG5336 52 FISGILVGAGIGWLL 66 (116)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666655543
Done!