BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016386
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 125/250 (50%), Gaps = 14/250 (5%)
Query: 4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
FHV G+++ S Y CV C+ CFA L KC C+ +YC CQK DW L
Sbjct: 27 FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85
Query: 63 HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMS 122
H+LEC + L + S T + + T ++ V +H+
Sbjct: 86 HKLECSSMVVLGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVREFESHLD 139
Query: 123 DID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
+D EK+ L+ + IA L L++P+ S + F+++ CN TI + EL LG+
Sbjct: 140 KLDNEKKDLIQSDIAALHQFYSKYLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSA 197
Query: 179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238
++P ++++NHSC PN ++ ++G LA VRAVQ + G EV SYI+ T R L++
Sbjct: 198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDS 257
Query: 239 YLFTCTCPRC 248
Y FTC C C
Sbjct: 258 YFFTCECREC 267
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 121/244 (49%), Gaps = 9/244 (3%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
G+++ S Y V + + C+ CF L KC C+ +YC CQK DW +H+LE
Sbjct: 30 GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
C + + S T + + T ++ V+ +H+ +D
Sbjct: 90 CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGLYPVIS 184
EK+ L+ + IA L + + E N+ + F+++ CN TI + EL LG+ ++P ++
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLEFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVA 203
Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCT 244
++NHSC PN ++ ++G LA VRAVQ + G EV SYI+ T R L++ Y FTC
Sbjct: 204 LMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCE 263
Query: 245 CPRC 248
C C
Sbjct: 264 CQEC 267
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 122/246 (49%), Gaps = 13/246 (5%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
G+++ S Y V + + C+ CF L KC C+ +YC CQK DW +H+LE
Sbjct: 30 GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
C + + S T + + T ++ V+ +H+ +D
Sbjct: 90 CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
EK+ L+ + IA L + L +P+ + + F+++ CN TI + EL LG+ ++P
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLGFPDN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPD 201
Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT 242
++++NHSC PN ++ ++G LA VRAVQ + G EV SYI+ T R L++ Y FT
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
Query: 243 CTCPRC 248
C C C
Sbjct: 262 CECQEC 267
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 122/246 (49%), Gaps = 13/246 (5%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
G+++ S Y V + + C+ CF L KC C+ +YC CQK DW +H+LE
Sbjct: 30 GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
C + + S T + + T ++ V+ +H+ +D
Sbjct: 90 CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
EK+ L+ + IA L + L +P+ + + F+++ CN TI + EL LG+ ++P
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLGFPDN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPD 201
Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT 242
++++NHSC PN ++ ++G LA VRAVQ + G EV SYI+ T R L++ Y FT
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
Query: 243 CTCPRC 248
C C C
Sbjct: 262 CECQEC 267
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 125/251 (49%), Gaps = 21/251 (8%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 63 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 122
Query: 67 CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 123 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 173
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 174 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 231
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
GLYP IS++NHSC PN +VF G ++RAV+ + G E+ I Y++ ++ R+K L++
Sbjct: 232 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 291
Query: 238 QYLFTCTCPRC 248
QY F C C RC
Sbjct: 292 QYCFECDCFRC 302
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 125/251 (49%), Gaps = 21/251 (8%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 28 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 87
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXX-XXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 88 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 138
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 139 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 196
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
GLYP IS++NHSC PN +VF G ++RAV+ + G E+ I Y++ ++ R+K L++
Sbjct: 197 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 256
Query: 238 QYLFTCTCPRC 248
QY F C C RC
Sbjct: 257 QYCFECDCFRC 267
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 125/251 (49%), Gaps = 21/251 (8%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 27 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXX-XXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 87 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 137
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 138 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 195
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
GLYP IS++NHSC PN +VF G ++RAV+ + G E+ I Y++ ++ R+K L++
Sbjct: 196 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 255
Query: 238 QYLFTCTCPRC 248
QY F C C RC
Sbjct: 256 QYCFECDCFRC 266
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 125/251 (49%), Gaps = 21/251 (8%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 29 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 88
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXX-XXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 89 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 139
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 140 EDKKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 197
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
GLYP IS++NHSC PN +VF G ++RAV+ + G E+ I Y++ ++ R+K L++
Sbjct: 198 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 257
Query: 238 QYLFTCTCPRC 248
QY F C C RC
Sbjct: 258 QYCFECDCFRC 268
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 125/251 (49%), Gaps = 21/251 (8%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 27 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXX-XXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 87 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 137
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 138 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 195
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
GLYP IS++NHSC PN +VF G ++RAV+ + G E+ I Y++ ++ R+K L++
Sbjct: 196 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 255
Query: 238 QYLFTCTCPRC 248
QY F C C RC
Sbjct: 256 QYCFECDCFRC 266
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 120/252 (47%), Gaps = 23/252 (9%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 28 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLXRCSQCRVAKYCSAKCQKKAWPDHKRE 87
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXX-XXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 88 CKCL--------KSCKPRYPPDSVRLLGRVVFKLXDGAPSESEKLYSFYD-LESNINKLT 138
Query: 126 EKQLLLYAQIANLVNLILQWPEISINEIA---------ENFSKLACNAHTICNSELRPLG 176
E + + LV + I + + E F+K+ CN+ TICN+E + +G
Sbjct: 139 EDR---KEGLRQLVXTFQHFXREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEXQEVG 195
Query: 177 TGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALK 236
GLYP IS++NHSC PN +VF G ++RAV+ + G E+ I Y++ ++ R+K L+
Sbjct: 196 VGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDXLXTSEERRKQLR 255
Query: 237 EQYLFTCTCPRC 248
+QY F C C RC
Sbjct: 256 DQYCFECDCFRC 267
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 30/270 (11%)
Query: 7 SGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRL 65
+ +VI ++ Y V +S C CF L +C C+ YC CQK W H+
Sbjct: 29 AADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKN 88
Query: 66 ECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
EC + + K +++ + + + S ++ V H + +
Sbjct: 89 ECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDD-----LQNHVEHFGEEE 143
Query: 126 EKQLLLYAQIANLVNLILQWP----EISINEIAENFSKLACNAHTICNSE-LRPLGTGLY 180
+K+L + ++ + WP + S+ I+ F + CN T+ + L+ +G G++
Sbjct: 144 QKELRV-----DVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIF 198
Query: 181 PVISIINHSCLPNAVLVFE-GRLAVVRAVQH------------VPKGAEVLISYIETAGS 227
P + ++NH C PN ++F G V+++ H + +G E+ +SYI+
Sbjct: 199 PNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHL 258
Query: 228 TMTRQKALKEQYLFTCTCPRCIKLGQFDDI 257
+ R++ LK+QY F C+C C K G DD+
Sbjct: 259 SEERRRQLKKQYYFDCSCEHCQK-GLKDDL 287
>pdb|2D8Q|A Chain A, Solution Structure Of The Mynd Domain Of The Human Zinc
Finger Mynd Domain-Containing Protein 10
Length = 70
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEK 77
RC C A ++ K+CS CQ WYC CQ W+ H C + ++ D+ K
Sbjct: 17 RCAYCSAEAS-KRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQGDRAK 64
>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain
Length = 52
Score = 32.3 bits (72), Expect = 0.49, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 39 LKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
+ +C+ C V YC + CQ+ DWK H+ C
Sbjct: 20 MSECTGCHKVNYCSTFCQRKDWKDHQHIC 48
>pdb|2DAN|A Chain A, The Solution Structure Of The Mynd Domain
(Leu384-Cys430) Of Human Zinc Finger Mynd Domain
Containing Protein 10
Length = 60
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS 71
RC C A ++ K+CS CQ WYC CQ W+ H C S
Sbjct: 17 RCAYCSAEAS-KRCSRCQNEWYCCRECQVKHWEKHGKTCSGPS 58
>pdb|2OD1|A Chain A, Solution Structure Of The Mynd Domain From Human
Aml1-Eto
Length = 60
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 16 PYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
P PN+ SS S C C ++ + CS C YCGS CQ DW+ H C
Sbjct: 3 PNSGSPNSDSSES-CWNCGRKAS-ETCSGCNTARYCGSFCQHKDWEKHHHIC 52
>pdb|2DJ8|A Chain A, Solution Structure Of Zf-Mynd Domain Of Protein Cbfa2ti
(Protein Mtg8)
Length = 60
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 42 CSACQVVWYCGSNCQKLDWKLHRLEC 67
CS C YCGS CQ DW+ H C
Sbjct: 29 CSGCNTARYCGSFCQHKDWEKHHHIC 54
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 184 SIINHSCLPNAVLVFEGR-LAVVRAVQHVPKGAEVLISY 221
+ INH C PN V GR A V+A++ + G E+ Y
Sbjct: 207 AFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYY 245
>pdb|2ODD|A Chain A, Solution Structure Of The Mynd Domain From Aml1-Eto
Complexed With Smrt, A Corepressor
Length = 64
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 42 CSACQVVWYCGSNCQKLDWKLHRLEC 67
CS C YCGS CQ DW+ H C
Sbjct: 31 CSGCNTARYCGSFCQHKDWEKHHHIC 56
>pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310
pdb|3QXY|B Chain B, Human Setd6 In Complex With Rela Lys310
pdb|3RC0|A Chain A, Human Setd6 In Complex With Rela Lys310 Peptide
pdb|3RC0|B Chain B, Human Setd6 In Complex With Rela Lys310 Peptide
Length = 449
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238
+ P I+NH NA L + + A Q +PKG E+ +Y + A + E
Sbjct: 219 MVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEP 278
Query: 239 Y 239
Y
Sbjct: 279 Y 279
>pdb|3I4R|A Chain A, Nup107(Aa658-925)NUP133(AA517-1156) Complex, H.Sapiens
Length = 277
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKGYIHSSILCLGCSIIPVG- 375
L S G +QE + M+ + KLY FS ++ KL++ SS++ L + P+G
Sbjct: 210 LHSTGQYQECLQLADMVSSERHKLYLVFSKEELR---KLLQKLRESSLMLLDQGLDPLGY 266
Query: 376 --NLNGFLVT 383
L+G +VT
Sbjct: 267 EIQLSGRIVT 276
>pdb|4A24|A Chain A, Structural And Functional Analysis Of The Deaf-1 And
Bs69 Mynd Domains
Length = 47
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 39 LKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
+ +C+ C V YC + CQ+ DWK H+ C
Sbjct: 15 MSECTGCHKVNYCSTFCQRKDWKDHQHIC 43
>pdb|2C82|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2C82|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
Length = 413
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 139 VNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCL 191
++L L WP A AC+ HT + E PL T ++P + + + +
Sbjct: 271 ISLALGWPRRVSGAAA------ACDFHTASSWEFEPLDTDVFPAVELARQAGV 317
>pdb|3VMN|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
pdb|3VMO|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
In Complex With Isomaltotriose
pdb|3VMP|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
In Complex With 4,5-Epoxypentyl Alpha-D-Glucopyranoside
Length = 643
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 131 LYAQIANLVNLILQWPEISINEI-AENFSKLACNAHTICNSELRPLGT---GLYPVISII 186
+YA+ N + L +++N++ EN SKLA + + +EL P GT G P S
Sbjct: 315 VYAEFLNKMKEKLPQYYLTLNDVNGENISKLANSKQDVIYNELWPFGTSALGNRPQESYG 374
Query: 187 NHSCLPNAVLVFEGRLAVVRAVQHVPK 213
+ + V G+ +V A PK
Sbjct: 375 DLKARVDQVRQATGKSLIVGAYMEEPK 401
>pdb|2JCV|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCV|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JD1|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese And Nadph
pdb|2JD1|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese And Nadph
pdb|2JD2|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese
pdb|2JD2|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese
pdb|3RAS|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With A Lipophilic
Phosphonate Inhibitor
pdb|3RAS|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With A Lipophilic
Phosphonate Inhibitor
pdb|2Y1C|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1C|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1D|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue And Manganese.
pdb|2Y1D|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue And Manganese.
pdb|2Y1E|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1E|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1F|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue, Manganese And Nadph.
pdb|2Y1F|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue, Manganese And Nadph.
pdb|2Y1G|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fr900098 Analogue And Manganese.
pdb|2Y1G|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fr900098 Analogue And Manganese.
pdb|4A03|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Dxr In
Complex With The Antibiotic Fr900098 And Cofactor Nadph
pdb|4A03|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Dxr In
Complex With The Antibiotic Fr900098 And Cofactor Nadph
pdb|4AIC|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin, Manganese
And Nadph
pdb|4AIC|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin, Manganese
And Nadph
Length = 398
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 139 VNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCL 191
++L L WP A AC+ HT + E PL T ++P + + + +
Sbjct: 280 ISLALGWPRRVSGAAA------ACDFHTASSWEFEPLDTDVFPAVELARQAGV 326
>pdb|2JCX|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCX|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCY|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2JCY|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2JD0|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Nadph
pdb|2JD0|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Nadph
Length = 398
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 139 VNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCL 191
++L L WP A AC+ HT + E PL T ++P + + + +
Sbjct: 280 ISLALGWPRRVSGAAA------ACDFHTASSWEFEPLDTDVFPAVELARQAGV 326
>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme
Phosphoribosylanthranilate Isomerase:
Indoleglycerolphosphate Synthase From Escherichia Coli
Refined At 2.0 Angstroms Resolution
Length = 452
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 29/152 (19%)
Query: 126 EKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISI 185
E+ + L A++ + N L+ I +N E KL N I S G Y +
Sbjct: 171 ERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISES-----GINTYAQVRE 225
Query: 186 INHSC----LPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQY-- 239
++H + +A++ + A VR VL+ + G +TR + K Y
Sbjct: 226 LSHFANGFLIGSALMAHDDLHAAVR---------RVLLGENKVCG--LTRGQDAKAAYDA 274
Query: 240 -------LFTCTCPRCIKLGQFDDIQESAILE 264
+F T PRC+ + Q ++ +A L+
Sbjct: 275 GAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQ 306
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,386,315
Number of Sequences: 62578
Number of extensions: 385822
Number of successful extensions: 863
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 42
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)