BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016387
(390 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356536322|ref|XP_003536688.1| PREDICTED: putative DNA repair protein RAD23-3-like [Glycine max]
Length = 408
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 284/408 (69%), Positives = 323/408 (79%), Gaps = 20/408 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P+DTV +VK IETVQG+DVYPAAQQMLI+QGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP-TKAPQSSAPTPAATPATAPQTAVPISTE 120
ENKV EN+F+VIML+K+K P+GEGST STAP TKAPQ+S PA+TP +
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTST-VPASTPPASVVPQASAPAP 119
Query: 121 PTPAPTPAPASASVS------------------SVSATSESGVYGHAASNLVAGNNLEGA 162
ASV+ S +A S +YG AASNLVAG+NLEG
Sbjct: 120 APAPAATGALPASVTAPISSPSPAPAPTPAPISSGTAVEGSDIYGQAASNLVAGSNLEGT 179
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
IQQILDMGGG+WDRDTVVRALRAAYNNPERAVEYLY+GIPEQAE VA+ P + Q N
Sbjct: 180 IQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVAQVPASAQPTNP 239
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
P PQ QPAPVTS+GPNANPLDLFPQGLP+VGSGAAGAGSLDFLRNS QFQ LRAMVQ
Sbjct: 240 PADAPQTAQPAPVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQ 299
Query: 283 ANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQV 342
ANPQ+LQPMLQELGKQNP L+RLI++HQADFLRLINEP +G EGN+ Q+A MPQ++ V
Sbjct: 300 ANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGAEGNILGQMASAMPQAVTV 359
Query: 343 TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
TPEER+AIERLEAMGFDRAIVLEV+FACNKNEELAANYLLDHMHEFE+
Sbjct: 360 TPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEE 407
>gi|356575534|ref|XP_003555895.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 1
[Glycine max]
Length = 402
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 286/406 (70%), Positives = 323/406 (79%), Gaps = 22/406 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P+DTV +VK IETVQG+DVYPAAQQMLI+QGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTA-PTKAPQSSAPTPAATPATAPQTAVPISTE 120
ENKVAEN+F+VIML+K+K +GEGST STA TKAPQ+S PA+ P +V
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTST-----VPASTPPVSVAPQAP 115
Query: 121 PTPAPTPAPASASVSSV----------------SATSESGVYGHAASNLVAGNNLEGAIQ 164
A PAS + +A S +YG AASNLVAG+NLEG IQ
Sbjct: 116 APAATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQ 175
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPT 224
QILDMGGG+WDRDTVVRALRAAYNNPERAVEYLY+GIPEQAE VARAP + Q N P
Sbjct: 176 QILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPA 235
Query: 225 QMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
PQ QPA VTS+GPNANPLDLFPQGLP+VGSGAAGAGSLDFLRNS QFQ LRAMVQAN
Sbjct: 236 DAPQTAQPAAVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQAN 295
Query: 285 PQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTP 344
PQ+LQPMLQELGKQNP L+RLI++HQADFLRLINEP +GGEGN+ Q+A MPQ++ VTP
Sbjct: 296 PQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGEGNILGQMASGMPQAVTVTP 355
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EER+AIERLEAMGFDRAIVLEV+FACNKNEELAANYLLDHMHEFE+
Sbjct: 356 EERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEE 401
>gi|225452017|ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 1 [Vitis
vinifera]
gi|296087286|emb|CBI33660.3| unnamed protein product [Vitis vinifera]
Length = 381
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 290/391 (74%), Positives = 321/391 (82%), Gaps = 12/391 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPEDTV DVK IE V G+DVYPAAQQMLI+QGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKA--PQSSAPTPAATPATAPQTAVPIST 119
EN+VAE+SFVVIML+KNK G ST S APT P SS+P + P+TAPQ P+
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQA--PVVA 118
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P P PAPA A S +S+S +YG AASNLVAGNNLE IQQILDMGGG+WDRDTV
Sbjct: 119 LPEVIPEPAPAVAP----SISSDSDIYGQAASNLVAGNNLEVTIQQILDMGGGSWDRDTV 174
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
VRALRAAYNNPERAVEYLYSGIPEQAE P AR P +G A N PTQ PQ Q V SSG
Sbjct: 175 VRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQAPQGPQ-TTVASSG 233
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
PNANPLDLFPQGLP +GS A+ AG+LDFLRNSPQFQ LRAMVQANPQ+LQPMLQELGKQN
Sbjct: 234 PNANPLDLFPQGLPSMGSNAS-AGTLDFLRNSPQFQALRAMVQANPQILQPMLQELGKQN 292
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
P L+RLIQEHQADFLRLINEPV+ GEGN+ QL G +PQ++ +TPEERE+IERLEAMGFD
Sbjct: 293 PHLMRLIQEHQADFLRLINEPVE-GEGNVLGQL-GTVPQAVTITPEERESIERLEAMGFD 350
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFED 390
RA+VLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct: 351 RALVLEVFFACNKNEELAANYLLDHMHEFEE 381
>gi|225423953|ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23-3 [Vitis vinifera]
gi|297737829|emb|CBI27030.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust.
Identities = 300/401 (74%), Positives = 326/401 (81%), Gaps = 16/401 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F+++VKPEDTV DVK IE VQGSDVYPA+QQMLI+QGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIQVKPEDTVADVKANIEAVQGSDVYPASQQMLIHQGKVLKDGTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPT------------PAATPAT 109
ENKVAENSFVV+ML+KNK + EGST STAP AP + + T
Sbjct: 61 ENKVAENSFVVVMLSKNKN-SSEGSTASTAPAPAPAPAPTPIVKAPSASAPPPTTTSTLT 119
Query: 110 APQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDM 169
APQ V P P PAPA+ S+V+ SE+ YG AASNLVAGNN E AIQQILDM
Sbjct: 120 APQAPVVALPPPATVPAPAPAATPASTVTVVSETDAYGQAASNLVAGNNFEEAIQQILDM 179
Query: 170 GGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQP 229
GGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV PVARAP +GQAAN P Q QP
Sbjct: 180 GGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVARAPASGQAANPPAQSQQP 239
Query: 230 TQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQ 289
PAP SSGPNANPLDLFPQG+P+VGS AGAG+LDFLRNS QFQ LRAMVQANPQ+LQ
Sbjct: 240 V-PAP--SSGPNANPLDLFPQGIPNVGSNPAGAGTLDFLRNSQQFQALRAMVQANPQILQ 296
Query: 290 PMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREA 349
PMLQELGKQNPQL+RLIQEHQADFLRLINEPV+GGEGN+ QLA MPQ++ VTPEEREA
Sbjct: 297 PMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGGEGNILGQLAAAMPQAVTVTPEEREA 356
Query: 350 IERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
I RLEAMGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 357 IARLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
>gi|363807216|ref|NP_001242098.1| uncharacterized protein LOC100813881 [Glycine max]
gi|255641670|gb|ACU21107.1| unknown [Glycine max]
Length = 400
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 290/404 (71%), Positives = 325/404 (80%), Gaps = 19/404 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P DT+ +VK IETVQG+DVYPAAQQMLI+QGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKVAE+SF+VIML+K K +GEGST STAP+ P S+ PT + +TAPQ P ST
Sbjct: 61 ENKVAESSFIVIMLSKTKSSSGEGSTTSTAPSAKP-SATPTSTSV-STAPQ--APASTGA 116
Query: 122 TPAPTPAPASAS---------------VSSVSATSESGVYGHAASNLVAGNNLEGAIQQI 166
+ P AP +A + S S+ ES +YG AASNLVAG+NLEG IQQI
Sbjct: 117 SATPVTAPTAAPAPAPAPAAPAPAPAPIFSGSSVPESDIYGQAASNLVAGSNLEGTIQQI 176
Query: 167 LDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQM 226
LDMGGG+WDRDTVVR LRAAYNNPERAVEYLYSGIPEQAE PV P + Q +N P
Sbjct: 177 LDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEAPPVTGVPASAQPSNPPADT 236
Query: 227 PQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQ 286
PQ QPA V SSGPNANPLDLFPQGLP+VGSGAAGAGSLDFLRNS QFQ LRAMVQANPQ
Sbjct: 237 PQAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQ 296
Query: 287 LLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEE 346
+LQPMLQELGKQNP L+RLIQEHQ DFLRLINEPV+GGEGN+ QLAG MPQ++ VTPEE
Sbjct: 297 ILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLAGTMPQAVTVTPEE 356
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
R+AIERLEAMGFDRA VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 357 RQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 400
>gi|255636381|gb|ACU18529.1| unknown [Glycine max]
Length = 382
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 282/390 (72%), Positives = 315/390 (80%), Gaps = 9/390 (2%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P DT+ +VK IETVQG+DVYPAAQQMLI+QGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 62 ENKVAENSFVVIMLTK-NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
ENKVAE+SF+VIML+K + PT ST+ + APQ+ A T A+ TA
Sbjct: 61 ENKVAESSFIVIMLSKPSATPT------STSVSTAPQAPASTGASATPVTAPTAA--PAP 112
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
PAPA A + S S+ ES +YG AASNLVAG+NLEG IQQILDMGGG+WDRDTVV
Sbjct: 113 APAPAAPAPAPAPIFSGSSVPESDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVV 172
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
R LRAAYNNPERAVEYLYSGIPEQAE PV P + Q +N P PQ QPA V SSGP
Sbjct: 173 RTLRAAYNNPERAVEYLYSGIPEQAEALPVTGVPASAQPSNPPADTPQAAQPASVPSSGP 232
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
NANPLDLFPQGLP+VGSGAAGAGSLDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNP
Sbjct: 233 NANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNP 292
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDR 360
L+RLIQEHQ DFLRLINEPV+GGEGN+ QLAG MPQ++ VTPEER+AIERLEAMGFDR
Sbjct: 293 HLMRLIQEHQVDFLRLINEPVEGGEGNILGQLAGAMPQAVTVTPEERQAIERLEAMGFDR 352
Query: 361 AIVLEVFFACNKNEELAANYLLDHMHEFED 390
A VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 353 ATVLEVYFACNKNEELAANYLLDHMHEFDE 382
>gi|356575536|ref|XP_003555896.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 2
[Glycine max]
Length = 399
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 281/406 (69%), Positives = 317/406 (78%), Gaps = 25/406 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P+DTV +VK IETVQG+DVYPAAQQMLI+QGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTA-PTKAPQSSAPTPAATPATAPQTAVPISTE 120
ENKVAEN+F+VIML+K+K +GEGST STA TKAPQ+S PA+ P +V
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTST-----VPASTPPVSVAPQAP 115
Query: 121 PTPAPTPAPASASVSSV----------------SATSESGVYGHAASNLVAGNNLEGAIQ 164
A PAS + +A S +YG AASNLVAG+NLEG IQ
Sbjct: 116 APAATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQ 175
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPT 224
QILDMGGG+WDRDTVVRALRAAYNNPERAVEYLY+GIPEQAE VARAP + Q N P
Sbjct: 176 QILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPA 235
Query: 225 QMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
PQ QPA VTS+GPNANPLDLFPQ SGAAGAGSLDFLRNS QFQ LRAMVQAN
Sbjct: 236 DAPQTAQPAAVTSAGPNANPLDLFPQ---VAISGAAGAGSLDFLRNSQQFQALRAMVQAN 292
Query: 285 PQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTP 344
PQ+LQPMLQELGKQNP L+RLI++HQADFLRLINEP +GGEGN+ Q+A MPQ++ VTP
Sbjct: 293 PQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGEGNILGQMASGMPQAVTVTP 352
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EER+AIERLEAMGFDRAIVLEV+FACNKNEELAANYLLDHMHEFE+
Sbjct: 353 EERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEE 398
>gi|356575538|ref|XP_003555897.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 3
[Glycine max]
Length = 381
Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust.
Identities = 272/390 (69%), Positives = 308/390 (78%), Gaps = 11/390 (2%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P+DTV +VK IETVQG+DVYPAAQQMLI+QGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKVAEN+F+VIML+K ST P P S A PA ++
Sbjct: 61 ENKVAENTFIVIMLSKT----------STVPASTPPVSVAPQAPAPAATGALPASVTAPV 110
Query: 122 TPAPTPAPASASVSSV-SATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+ + + S +A S +YG AASNLVAG+NLEG IQQILDMGGG+WDRDTVV
Sbjct: 111 SSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVV 170
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RALRAAYNNPERAVEYLY+GIPEQAE VARAP + Q N P PQ QPA VTS+GP
Sbjct: 171 RALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAPQTAQPAAVTSAGP 230
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
NANPLDLFPQGLP+VGSGAAGAGSLDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNP
Sbjct: 231 NANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNP 290
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDR 360
L+RLI++HQADFLRLINEP +GGEGN+ Q+A MPQ++ VTPEER+AIERLEAMGFDR
Sbjct: 291 HLMRLIRDHQADFLRLINEPAEGGEGNILGQMASGMPQAVTVTPEERQAIERLEAMGFDR 350
Query: 361 AIVLEVFFACNKNEELAANYLLDHMHEFED 390
AIVLEV+FACNKNEELAANYLLDHMHEFE+
Sbjct: 351 AIVLEVYFACNKNEELAANYLLDHMHEFEE 380
>gi|358248820|ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycine max]
gi|255644546|gb|ACU22776.1| unknown [Glycine max]
Length = 392
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 295/396 (74%), Positives = 324/396 (81%), Gaps = 11/396 (2%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P DT+ +VK IETVQG+DVYPAAQQMLI+QGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST-- 119
ENKVAENSF+VIML+K K +GEGST STAP+ S+ PT + A APQ P ST
Sbjct: 61 ENKVAENSFIVIMLSKTKSSSGEGSTTSTAPS-VKASATPTSTSVSA-APQA--PASTGA 116
Query: 120 -----EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
AP A A A +SS SA ES +YG AASNLVAG+NLEG IQQILDMGGG+W
Sbjct: 117 TPTPVTAPAAPASAAAPAPISSGSAVPESDIYGQAASNLVAGSNLEGTIQQILDMGGGSW 176
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
DRDTVVRALRAAYNNPERAVEYLYSGIPEQAE PV R P + Q AN P PQ QPA
Sbjct: 177 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTREPASAQPANPPAAAPQAAQPAS 236
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
V SSGPNANPLDLFPQGLP+VGSGAAGAGSLDFLRNS QFQ LRAMVQANPQ+LQPMLQE
Sbjct: 237 VPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQE 296
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLE 354
LGKQNP L+RLIQEHQ DFLRLINEPV+GGEGN+ QLA MPQ++ VTPEER+AIERLE
Sbjct: 297 LGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLASAMPQAVTVTPEERQAIERLE 356
Query: 355 AMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
AMGFDRA VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 357 AMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 392
>gi|255576447|ref|XP_002529115.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223531394|gb|EEF33228.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 409
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 304/409 (74%), Positives = 323/409 (78%), Gaps = 20/409 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT+FDVEVKPEDT+ DVK IET QG+DVYPA QQMLIYQGKVLKD+TT++
Sbjct: 1 MKIFVKTLKGTTFDVEVKPEDTIADVKKSIETTQGADVYPAGQQMLIYQGKVLKDNTTID 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT-KAPQSSAPTPAATPA------------ 108
ENKVAENSFVVIMLTKNK TGEGST STA T KAPQ+ P A PA
Sbjct: 61 ENKVAENSFVVIMLTKNKSSTGEGSTASTASTTKAPQTIIPATIAPPAPVPTSALPAPAP 120
Query: 109 ---TAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQ 165
A A + P P P APA A S A + VYG AASNLVAGNNLEGAIQQ
Sbjct: 121 APTPAAAPAPAAAPAPAPTPAAAPAPAPAPSAIAAQQGDVYGQAASNLVAGNNLEGAIQQ 180
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV PVA +GQAAN P Q
Sbjct: 181 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVAPVSLSGQAANQPAQ 240
Query: 226 MPQPTQPAPVTSSGPNANPLDLFPQGLPDV----GSGAAGAGSLDFLRNSPQFQVLRAMV 281
QP QPA V S GPNANPLDLFPQGLP++ AGAG+LDFLRNS QFQ LRAMV
Sbjct: 241 PQQPAQPAAVPSGGPNANPLDLFPQGLPNMGSGGAGAGAGAGTLDFLRNSQQFQALRAMV 300
Query: 282 QANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQ 341
QANPQ+LQPMLQELGKQNP LVRLIQEHQ DFLRLINEPV+GGEGN+ QLA MPQ++
Sbjct: 301 QANPQILQPMLQELGKQNPNLVRLIQEHQTDFLRLINEPVEGGEGNIMGQLAAAMPQAVT 360
Query: 342 VTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
VTPEEREAIERLEAMGFDR +VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 361 VTPEEREAIERLEAMGFDRGLVLEVFFACNKNEELAANYLLDHMHEFED 409
>gi|255551362|ref|XP_002516727.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223544100|gb|EEF45625.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 381
Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust.
Identities = 275/393 (69%), Positives = 310/393 (78%), Gaps = 16/393 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT+F+++VKPEDTV DVK IE QG+DVYPA+QQMLI+QGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTNFEIDVKPEDTVEDVKNNIEIAQGADVYPASQQMLIHQGKVLKDGTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP--TKAPQSSAPTPAATPATAPQTAVPIST 119
ENKVAENSF+VIML+K K GST S+AP P S+ P A P+T Q +
Sbjct: 61 ENKVAENSFIVIMLSKRKVSPSGGSTASSAPPSQAQPASTLPPSATQPSTTAQAPAVTAE 120
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P A P VSS E+ +YG AASNLVAG+NLE +QQILDMGGG+WDR+TV
Sbjct: 121 LPQSAAESTPVVNPVSS-----ETDIYGQAASNLVAGSNLEATVQQILDMGGGSWDRETV 175
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPT--QPAPVTS 237
RALRAA+NNPERAVEYLYSGIPEQ EVQP+ RAP +GQAA +P T +PA TS
Sbjct: 176 ARALRAAFNNPERAVEYLYSGIPEQPEVQPLPRAPSSGQAA-----IPSATAQEPAAPTS 230
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
G NANPLDLFPQGLP +GS AG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGK
Sbjct: 231 GGANANPLDLFPQGLPTIGS-TTSAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGK 289
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMG 357
QNP L+RLIQEHQADFLRLINEPV+ G+GNL QLA +PQS+ VTPEEREAIERLEAMG
Sbjct: 290 QNPHLMRLIQEHQADFLRLINEPVE-GDGNLLGQLASAVPQSVSVTPEEREAIERLEAMG 348
Query: 358 FDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
FDRAIVLEVFFACNKNEELAANYLLDHMH+FE+
Sbjct: 349 FDRAIVLEVFFACNKNEELAANYLLDHMHDFEE 381
>gi|224111696|ref|XP_002315945.1| predicted protein [Populus trichocarpa]
gi|222864985|gb|EEF02116.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 286/390 (73%), Positives = 313/390 (80%), Gaps = 13/390 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKG++FD+EVKP DTV DVK IET QG+ VYPA QQMLIYQGKVLKDDTTL
Sbjct: 1 MKIFVKTLKGSTFDIEVKPGDTVADVKKNIETAQGASVYPAEQQMLIYQGKVLKDDTTLG 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKVAENSFVVIML+K K +GEGST S APT P P + P A + P
Sbjct: 61 ENKVAENSFVVIMLSKAKSSSGEGSTTSAAPT-------PKVITLPTSVPSPAPAPAPAP 113
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PAP + SS S +SGVYG AASNLVAGNNLEGA+QQILDMGGG+WDRDTVVR
Sbjct: 114 APAPR---SGFCSSSSSGFFKSGVYGQAASNLVAGNNLEGAVQQILDMGGGSWDRDTVVR 170
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQA-ANSPTQMPQPTQPAPVTSSGP 240
ALRAAYNNPERAVEYLY+GIPEQAE PVA+ P + QA A P Q QP QP V + GP
Sbjct: 171 ALRAAYNNPERAVEYLYTGIPEQAEAPPVAQVPVSEQAPAAQPRQ--QPAQPTTVPAGGP 228
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
NANPLDLFPQGLP++GSGAA AG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNP
Sbjct: 229 NANPLDLFPQGLPNIGSGAAEAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNP 288
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDR 360
L+RLIQEHQ DFLRLINEPV+GGEGN+ LA MPQS+ VTPEEREAIERL AMGFD
Sbjct: 289 HLMRLIQEHQDDFLRLINEPVEGGEGNVSGPLAAAMPQSVTVTPEEREAIERLGAMGFDP 348
Query: 361 AIVLEVFFACNKNEELAANYLLDHMHEFED 390
A+VLEV+FACNKNEELAANYLLDH+HEFED
Sbjct: 349 ALVLEVYFACNKNEELAANYLLDHIHEFED 378
>gi|77999269|gb|ABB16981.1| unknown [Solanum tuberosum]
Length = 382
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 272/390 (69%), Positives = 307/390 (78%), Gaps = 9/390 (2%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPEDTV DVK IETVQG DVYPAAQQMLI GKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIPPGKVLKDPTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQ-TAVPISTE 120
ENKVAENSFVVIML+KNK T S AP+ + Q + T T APQ TA ++
Sbjct: 61 ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSNSAQPATSTGQPTQTVAPQATAASVAPA 120
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+ + + + +A + VYG AASNLVAG+ LE +QQILDMGGG+W+RDTVV
Sbjct: 121 QSAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQILDMGGGSWERDTVV 180
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RALRAAYNNPERA+EYLYSGIPEQAE+ P AP +GQA N P Q QP P S GP
Sbjct: 181 RALRAAYNNPERAIEYLYSGIPEQAEIPPA--APASGQAVNPPVQASQPAVP----SGGP 234
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
NANPLDLFPQGLP+VGS GAG+LDFL NSPQFQ LRAMVQANPQ+LQPMLQELGKQNP
Sbjct: 235 NANPLDLFPQGLPNVGSN-VGAGNLDFLSNSPQFQALRAMVQANPQILQPMLQELGKQNP 293
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDR 360
QL+RLIQEHQADFLRLINEPV+ GEGN+ Q AG +PQ++ VTPEEREAIERLEAMGFDR
Sbjct: 294 QLMRLIQEHQADFLRLINEPVE-GEGNVPGQPAGAIPQAVTVTPEEREAIERLEAMGFDR 352
Query: 361 AIVLEVFFACNKNEELAANYLLDHMHEFED 390
A+VL+VFFAC KNEE+AANYLLDHMHEF++
Sbjct: 353 ALVLQVFFACXKNEEMAANYLLDHMHEFDE 382
>gi|90657579|gb|ABD96879.1| hypothetical protein [Cleome spinosa]
Length = 383
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 273/393 (69%), Positives = 315/393 (80%), Gaps = 14/393 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPEDTV DVK IETVQG+DVYP+AQQMLI+QGKVL+D+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIETVQGADVYPSAQQMLIHQGKVLRDETTME 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP---TKAPQSSAPTPAATPATAPQTAVPIS 118
ENKVAE SF+VIML+K+ +P + + T+AP AP + P+T+PQT P++
Sbjct: 61 ENKVAEKSFIVIMLSKSSKPASSSGASTASAAPTTQAP--PAPLASTQPSTSPQTPAPVA 118
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T + +V +++ +YG AASNLVAG+NLE IQQILDMGGG+WDRDT
Sbjct: 119 MPQAAPETAPAPAPAV------TQTDIYGQAASNLVAGSNLEATIQQILDMGGGSWDRDT 172
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
VVRALRAAYNNPERAVEYLYSGIPEQAEV PVA+AP +G +P A T S
Sbjct: 173 VVRALRAAYNNPERAVEYLYSGIPEQAEVPPVAQAPASGGQPTNPPAQAGQQPAAAPT-S 231
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
GPNANPLDLFPQGLP+VGS GAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQ
Sbjct: 232 GPNANPLDLFPQGLPNVGSN-TGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQ 290
Query: 299 NPQLVRLIQEHQADFLRLINEPVQGGE-GNLGDQLAGLMPQSIQVTPEEREAIERLEAMG 357
NPQL+RLIQEHQADFLRLINEPV+GGE GN+ QL G MPQ+IQVTPEEREAIERLEAMG
Sbjct: 291 NPQLMRLIQEHQADFLRLINEPVEGGEGGNISSQLGGAMPQAIQVTPEEREAIERLEAMG 350
Query: 358 FDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
F+R +VLEVFFACNKNEELAANYLLDHMHEF++
Sbjct: 351 FERGLVLEVFFACNKNEELAANYLLDHMHEFDE 383
>gi|224127650|ref|XP_002329330.1| predicted protein [Populus trichocarpa]
gi|222870784|gb|EEF07915.1| predicted protein [Populus trichocarpa]
Length = 384
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 271/390 (69%), Positives = 313/390 (80%), Gaps = 7/390 (1%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVF-DVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
MK+FVKTLKGT+F++EVKPEDTV +VK IE VQG+DVYPAAQQMLIYQGKVLKDDTTL
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVVVEVKKNIENVQGADVYPAAQQMLIYQGKVLKDDTTL 60
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
+E+KVAENSF+V+ML+K+K +G ST + AP T A P T +A P S+
Sbjct: 61 DESKVAENSFIVVMLSKSKVSSGGPSTATAAPPNVSSGGPSTATAAPPTL-VSAQPTSSL 119
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P+ P+ S + +A S++ +YG AASNLVAG+NLE IQQILDMGGG+W+R+TVV
Sbjct: 120 PSNVTQPSSTSQAAVPAAAFSDADMYGQAASNLVAGSNLEATIQQILDMGGGSWNRETVV 179
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RALRAA+NNPERAVEYLYSGIPEQAEV PVA+ P +G A N P Q QPA S GP
Sbjct: 180 RALRAAFNNPERAVEYLYSGIPEQAEVPPVAQGPASGVAVNPPAQA---QQPAAPPSGGP 236
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
NANPLDLFPQGLP GS AGAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNP
Sbjct: 237 NANPLDLFPQGLPSTGSN-AGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNP 295
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDR 360
L+RLIQEHQ DFLRLINEPV+ GEGN+ QLA +PQ++ VTPEEREAI+RL AMGFDR
Sbjct: 296 HLMRLIQEHQPDFLRLINEPVE-GEGNVLGQLASAVPQTVTVTPEEREAIDRLVAMGFDR 354
Query: 361 AIVLEVFFACNKNEELAANYLLDHMHEFED 390
A+VLEVFFACNKNEELAANYLLDHMHEF++
Sbjct: 355 ALVLEVFFACNKNEELAANYLLDHMHEFDE 384
>gi|77745475|gb|ABB02636.1| RAD23-like [Solanum tuberosum]
Length = 384
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 270/392 (68%), Positives = 306/392 (78%), Gaps = 11/392 (2%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPEDTV DVK IETVQG DVYPAAQQMLI+Q KVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIHQVKVLKDPTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQ---TAVPIS 118
ENKVAENSFVVIML+KNK T S AP+ + Q + T T APQ +V +
Sbjct: 61 ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSNSAQPATSTGQPTQTVAPQATAASVAPA 120
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
+ + + +A + VYG AASNLVAG+ LE +QQILDMGGG+W+RDT
Sbjct: 121 QSAPAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQILDMGGGSWERDT 180
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
VVRALRAAYNNPERA+EYLYSGIPEQAE+ P AP +GQA N P Q P P S
Sbjct: 181 VVRALRAAYNNPERAIEYLYSGIPEQAEIPPA--APVSGQAVNPPVQASPPAVP----SG 234
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
GPNANPLDLFPQGLP+VGS GAG+LDFL NSPQFQ LRAMVQANPQ+LQPMLQELGKQ
Sbjct: 235 GPNANPLDLFPQGLPNVGSN-VGAGNLDFLSNSPQFQALRAMVQANPQILQPMLQELGKQ 293
Query: 299 NPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGF 358
NPQL+RLIQEHQADFLRLINEPV+ GEGN+ Q AG +PQ++ VTPEEREAIERLEAMGF
Sbjct: 294 NPQLMRLIQEHQADFLRLINEPVE-GEGNVPGQPAGAIPQAVTVTPEEREAIERLEAMGF 352
Query: 359 DRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
DRA+VL+VFFACNKNEE+AANYLLDHMHEF++
Sbjct: 353 DRALVLQVFFACNKNEEMAANYLLDHMHEFDE 384
>gi|15232924|ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|55976503|sp|Q84L31.2|RD23C_ARATH RecName: Full=Putative DNA repair protein RAD23-3; AltName:
Full=RAD23-like protein 3; Short=AtRAD23-3
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis thaliana]
gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|21360453|gb|AAM47342.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|30409724|dbj|BAC76392.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735092|gb|ABG89116.1| Rad23-1 [synthetic construct]
gi|332640303|gb|AEE73824.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 419
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 280/425 (65%), Positives = 319/425 (75%), Gaps = 42/425 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS--- 118
ENKVAENSF+VIM+ K+K + S+ S ++A S P + P+ +PQT +S
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQA--KSIPPSTSQPSISPQTPASVSAPV 118
Query: 119 -----------------------TEPTPAPTPAPASASVS-----SVSATSESGVYGHAA 150
T TP P P PA+ S S S S+ VYG AA
Sbjct: 119 APAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAA 178
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV 210
SNL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PV
Sbjct: 179 SNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPV 238
Query: 211 ARAPGN-GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
AR P + GQ AN P Q QPA +SGPNANPLDLFPQGLP+VG G GAG+LDFLR
Sbjct: 239 ARPPASAGQPANPPAQT---QQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLR 294
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG--EGN 327
NS QFQ LRAMVQANPQ+LQPMLQELGKQNP L+RLIQ+HQADFLRLINEPV+GG GN
Sbjct: 295 NSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGN 354
Query: 328 LGDQLAGLM--PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
L Q+A M PQ+IQVT EEREAIERLEAMGF+RA+VLEVFFACNKNEELAANYLLDHM
Sbjct: 355 LLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHM 414
Query: 386 HEFED 390
HEFE+
Sbjct: 415 HEFEE 419
>gi|297832888|ref|XP_002884326.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
gi|297330166|gb|EFH60585.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
Length = 417
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 283/423 (66%), Positives = 323/423 (76%), Gaps = 40/423 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVK ED+V DVK IETVQG+DVYPAA+QMLI+QGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKLEDSVADVKKNIETVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPI---- 117
ENKVAENSF+V+ML K+K P G++ ++A T +S+ P+ + P+ +PQT +
Sbjct: 61 ENKVAENSFIVVMLNKSK-PASTGASSASAGTSQAKSTPPS-TSQPSISPQTPASVAAPV 118
Query: 118 --------------------STEPTPAPTPAPASASVS-----SVSATSESGVYGHAASN 152
T TP P P PA+ S S A S+ VYG AASN
Sbjct: 119 APAPTRAPPPAPTPAPVAATETVTTPIPEPVPATIPSSTPAPDSAPAGSQGDVYGQAASN 178
Query: 153 LVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVAR 212
L AG+NLE IQQILDMGGGTWDR+TVVRALRAA+NNPERAVEYLY+GIPEQAEV PVAR
Sbjct: 179 LAAGSNLESTIQQILDMGGGTWDRETVVRALRAAFNNPERAVEYLYTGIPEQAEVPPVAR 238
Query: 213 APGN-GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNS 271
AP + GQ AN Q QPA +SGPNANPLDLFPQGLP+VG G GAG+LDFLRNS
Sbjct: 239 APASFGQPANPSAQT---QQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLRNS 294
Query: 272 PQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG--EGNLG 329
QFQ LRAMVQANPQ+LQPMLQELGKQNP L+RLIQ+HQADFLRLINEPV+GG GNL
Sbjct: 295 QQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLL 354
Query: 330 DQLAGLM--PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
Q+A M PQ+IQVTPEEREAIERLEAMGFDRA+VLEVFFACNKNEELAANYLLDHMHE
Sbjct: 355 GQMAAGMPQPQAIQVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 414
Query: 388 FED 390
FE+
Sbjct: 415 FEE 417
>gi|334185033|ref|NP_001189793.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640305|gb|AEE73826.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 418
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 279/424 (65%), Positives = 320/424 (75%), Gaps = 41/424 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS--- 118
ENKVAENSF+VIM+ K+K + S+ S ++A S P + P+ +PQT +S
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQA--KSIPPSTSQPSISPQTPASVSAPV 118
Query: 119 -----------------------TEPTPAPTPAPASASVSSVSATS----ESGVYGHAAS 151
T TP P P PA+ S S+ + S + VYG AAS
Sbjct: 119 APAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGQGDVYGQAAS 178
Query: 152 NLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA 211
NL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVA
Sbjct: 179 NLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVA 238
Query: 212 RAPGN-GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRN 270
R P + GQ AN P Q QPA +SGPNANPLDLFPQGLP+VG G GAG+LDFLRN
Sbjct: 239 RPPASAGQPANPPAQT---QQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLRN 294
Query: 271 SPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG--EGNL 328
S QFQ LRAMVQANPQ+LQPMLQELGKQNP L+RLIQ+HQADFLRLINEPV+GG GNL
Sbjct: 295 SQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNL 354
Query: 329 GDQLAGLM--PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMH 386
Q+A M PQ+IQVT EEREAIERLEAMGF+RA+VLEVFFACNKNEELAANYLLDHMH
Sbjct: 355 LGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMH 414
Query: 387 EFED 390
EFE+
Sbjct: 415 EFEE 418
>gi|224079274|ref|XP_002305813.1| predicted protein [Populus trichocarpa]
gi|222848777|gb|EEE86324.1| predicted protein [Populus trichocarpa]
Length = 385
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 268/394 (68%), Positives = 312/394 (79%), Gaps = 14/394 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT+F++EVKPEDTV DVK IE+VQG+DVYPAAQQML+YQGKVLKDDTTL+
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVADVKKNIESVQGADVYPAAQQMLVYQGKVLKDDTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSA--PTPAATPATAPQTAVPIST 119
ENKV+E+SF V+ML+K+K +G ST AP ++ P+ P+ Q VP +
Sbjct: 61 ENKVSESSFFVVMLSKSKVSSGGPSTAPAAPASQAPPASSLPSNVTQPSITSQAPVPAAA 120
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P A +PA + SA ++ +YG AASNLVAG+NLE IQ+ILDMGGG W+R+TV
Sbjct: 121 LPQSAAESSPAVVT----SALLDTNMYGQAASNLVAGSNLEATIQEILDMGGGDWNRETV 176
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVAR---APGNGQAANSPTQMPQPTQPAPVT 236
VRALRAA+NNPERA++YLYSGIPEQAEV PVA+ P +G A N P PQP AP
Sbjct: 177 VRALRAAFNNPERAIDYLYSGIPEQAEVPPVAQVVQGPASGNAVNPPALAPQPVV-AP-- 233
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
+SGPNANPLDLFPQG GS AG G+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELG
Sbjct: 234 NSGPNANPLDLFPQGHHSTGSN-AGTGNLDFLRNSQQFQALRAMVQANPQILQPMLQELG 292
Query: 297 KQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM 356
KQNP L+RLIQEHQADFLRLINEPV+ GEGN+ QLA MPQ++ VTPEEREAIERLEAM
Sbjct: 293 KQNPYLMRLIQEHQADFLRLINEPVE-GEGNVLGQLASAMPQAVTVTPEEREAIERLEAM 351
Query: 357 GFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
GFDRAIVLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 352 GFDRAIVLEVYFACNKNEELAANYLLDHMHEFDE 385
>gi|225452019|ref|XP_002283661.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 2 [Vitis
vinifera]
Length = 361
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 272/391 (69%), Positives = 302/391 (77%), Gaps = 32/391 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPEDTV DVK IE V G+DVYPAAQQMLI+QGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKA--PQSSAPTPAATPATAPQTAVPIST 119
EN+VAE+SFVVIML+KNK G ST S APT P SS+P + P+TAPQ P+
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQA--PVVA 118
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P P PAPA A S +S+S +YG AASNLVAGNNLE IQQILDMGGG+WDRDTV
Sbjct: 119 LPEVIPEPAPAVAP----SISSDSDIYGQAASNLVAGNNLEVTIQQILDMGGGSWDRDTV 174
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
VRALRAAYNNPERAVEYLYSGIPEQAE P AR P +G A N PTQ PQ Q V SSG
Sbjct: 175 VRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQAPQGPQ-TTVASSG 233
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
PNANPLDLFPQGLP +GS A+ AG+LDFLRNSP QELGKQN
Sbjct: 234 PNANPLDLFPQGLPSMGSNAS-AGTLDFLRNSP--------------------QELGKQN 272
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
P L+RLIQEHQADFLRLINEPV+ GEGN+ QL G +PQ++ +TPEERE+IERLEAMGFD
Sbjct: 273 PHLMRLIQEHQADFLRLINEPVE-GEGNVLGQL-GTVPQAVTITPEERESIERLEAMGFD 330
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFED 390
RA+VLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct: 331 RALVLEVFFACNKNEELAANYLLDHMHEFEE 361
>gi|1914683|emb|CAA72741.1| RAD23, isoform I [Daucus carota]
Length = 382
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 271/391 (69%), Positives = 311/391 (79%), Gaps = 12/391 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI+VKTLKG+ F+++V P+D+V DVK IET QG+ VYPAAQQMLIYQGKVLKD TTL
Sbjct: 1 MKIYVKTLKGSQFEIQVNPDDSVADVKRSIETAQGAAVYPAAQQMLIYQGKVLKDGTTLL 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT-KAPQSSAPTPAATPATA--PQTAVPIS 118
EN VAENSF+VIML+K+K P+GEGST STA KAPQ+SAP PA + P + +P+
Sbjct: 61 ENNVAENSFIVIMLSKSKSPSGEGSTTSTAAAPKAPQTSAPPSVPAPAVSQPPASTLPVP 120
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
A+A + S + SE+ VY AAS LVAG+NLEGAIQQILDMGGGTWDRDT
Sbjct: 121 APSPAPAP---ATAPIPSAAVGSEANVYDSAASLLVAGSNLEGAIQQILDMGGGTWDRDT 177
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V+R +RAA+NNPERAVEYLYSGIPEQAE PVA +P +GQAAN P P S+
Sbjct: 178 VIRIVRAAFNNPERAVEYLYSGIPEQAEAPPVAPSPPSGQAAN-PLDQPPAAAQPAPASA 236
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
GPNANPLDLFPQGLPD+GS AAGAG+LDFLR + QFQ LRAMVQ+NPQ+LQPMLQELGKQ
Sbjct: 237 GPNANPLDLFPQGLPDMGSNAAGAGNLDFLRTNQQFQALRAMVQSNPQILQPMLQELGKQ 296
Query: 299 NPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGF 358
NP L+RLIQEHQADFL+LINEP++GGE LG PQ+I VTPEER+AIERLEAMGF
Sbjct: 297 NPHLMRLIQEHQADFLQLINEPMEGGENLLGHG-----PQAISVTPEERDAIERLEAMGF 351
Query: 359 DRAIVLEVFFACNKNEELAANYLLDHMHEFE 389
DR +VLEVFFACNKNEELAANYLLDHMHEFE
Sbjct: 352 DRELVLEVFFACNKNEELAANYLLDHMHEFE 382
>gi|5640111|emb|CAB51544.1| RAD23 protein [Solanum lycopersicum var. cerasiforme]
Length = 389
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 272/402 (67%), Positives = 308/402 (76%), Gaps = 26/402 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPED+V DVK IE+VQG DVYPAAQQMLI+QGKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDTTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKVAENSFVVIML+KNK S+ T+ A S+ P + A QT I+T
Sbjct: 61 ENKVAENSFVVIMLSKNKV-----SSTGTSSISAALSNTAQPDGSTDQARQT---ITTPQ 112
Query: 122 TPAPTPAPAS-----ASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
A P AS + +A+S + VY AASNLVAG+NLE +QQILDMGGG+WDR
Sbjct: 113 ATAALPQSASESAPTPAPVPAAASSVTDVYDQAASNLVAGSNLETTVQQILDMGGGSWDR 172
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEV--------QPVARAPGNGQAANSPTQMPQ 228
DTVVRALRAAYNNPERAV+YLYSGIPEQ E+ P AP + QA N Q
Sbjct: 173 DTVVRALRAAYNNPERAVDYLYSGIPEQTEIPPVARAPAAPAVTAPASAQAINPAAQ--D 230
Query: 229 PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
+Q A V SSGPNANPLDLFPQGL + GS AGAG+LDFLRNSPQFQ LRAMVQANPQ+L
Sbjct: 231 ASQLA-VPSSGPNANPLDLFPQGLTNAGSN-AGAGNLDFLRNSPQFQALRAMVQANPQIL 288
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEERE 348
QPMLQELGKQNP L+RLIQEHQ DFLRLINEPV+ GEGN+ Q AG +PQ++ VTPEERE
Sbjct: 289 QPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVE-GEGNVLGQTAGAIPQAVTVTPEERE 347
Query: 349 AIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
AIERLEAMGFDRA+VLEV+FACNKNEELAANYLLDH+HEF++
Sbjct: 348 AIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHLHEFDE 389
>gi|14335004|gb|AAK59766.1| unknown protein [Arabidopsis thaliana]
Length = 378
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 265/391 (67%), Positives = 308/391 (78%), Gaps = 16/391 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATP-ATAPQTAVPIST 119
EN V ENSF+VIML+K K P+G STA AP ++ P ATP +AP +VP+
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSG----ASTASAPAPSATQPQTVATPQVSAPTASVPV-- 113
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PT A+A+ + +A+ ++ VYG AASNLVAG LE +QQILDMGGG+WDRDTV
Sbjct: 114 -----PTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTV 168
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
VRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A +P PQ + G
Sbjct: 169 VRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGG 228
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
PNANPL+LFPQG+P AGAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQN
Sbjct: 229 PNANPLNLFPQGMPAA-DAGAGAGNLDFLRNSHQFQALRAMVQANPQILQPMLQELGKQN 287
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
PQLVRLIQEHQADFLRLINEPV+ GE N+ +QL MPQ++ VTPEEREAIERLE MGFD
Sbjct: 288 PQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFD 346
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFED 390
RA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 347 RAMVLEVFFACNKNEELAANYLLDHMHEFED 377
>gi|15240922|ref|NP_198663.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|55976502|sp|Q84L30.2|RD23D_ARATH RecName: Full=Putative DNA repair protein RAD23-4; AltName:
Full=RAD23-like protein 4; Short=AtRAD23-4
gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis thaliana]
gi|19548081|gb|AAL87405.1| At5g38470/At5g38470 [Arabidopsis thaliana]
gi|21593157|gb|AAM65106.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|30409728|dbj|BAC76394.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735094|gb|ABG89117.1| Rad23-2 [synthetic construct]
gi|332006938|gb|AED94321.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 378
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 265/391 (67%), Positives = 308/391 (78%), Gaps = 16/391 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATP-ATAPQTAVPIST 119
EN V ENSF+VIML+K K P+G STA AP ++ P ATP +AP +VP+
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSG----ASTASAPAPSATQPQTVATPQVSAPTASVPV-- 113
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PT A+A+ + +A+ ++ VYG AASNLVAG LE +QQILDMGGG+WDRDTV
Sbjct: 114 -----PTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTV 168
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
VRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A +P PQ + G
Sbjct: 169 VRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGG 228
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
PNANPL+LFPQG+P AGAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQN
Sbjct: 229 PNANPLNLFPQGMPAA-DAGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQN 287
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
PQLVRLIQEHQADFLRLINEPV+ GE N+ +QL MPQ++ VTPEEREAIERLE MGFD
Sbjct: 288 PQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFD 346
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFED 390
RA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 347 RAMVLEVFFACNKNEELAANYLLDHMHEFED 377
>gi|297805910|ref|XP_002870839.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
gi|297316675|gb|EFH47098.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
Length = 377
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 267/389 (68%), Positives = 304/389 (78%), Gaps = 13/389 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTL GT+F++EVKP DTV DVK IETV+G++ YPA +QMLI+QGKVLKD+TTLE
Sbjct: 1 MKIFVKTLSGTNFEIEVKPADTVSDVKKAIETVKGAE-YPAVKQMLIHQGKVLKDETTLE 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
EN V ENSF+VIML+K K + ST S A Q A T AT PQ + P T
Sbjct: 60 ENNVVENSFIVIMLSKTKVSSSGASTASAPAPSATQ------AQTVAT-PQVSAP--TVS 110
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P PT A+A+ + +A ++ VYG AASNLVAG LE +QQILDMGGG+WDRDTVVR
Sbjct: 111 VPEPTSGTATAAAPAAAAAVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVR 170
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ +P PQ P T GPN
Sbjct: 171 ALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPSTGEQPANPQAQPQQAAPVAAT-GGPN 229
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
ANPL+LFPQG+P AAGAG+LDFLRNS +FQ LRAMVQANPQ+LQPMLQELGKQNPQ
Sbjct: 230 ANPLNLFPQGMPAA-DAAAGAGNLDFLRNSQKFQALRAMVQANPQILQPMLQELGKQNPQ 288
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRA 361
LVRLIQEHQADFLRLINEPV+ GE N+ +QL MPQ++ VTPEEREAIERLEAMGFDRA
Sbjct: 289 LVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEAMGFDRA 347
Query: 362 IVLEVFFACNKNEELAANYLLDHMHEFED 390
+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 348 MVLEVFFACNKNEELAANYLLDHMHEFED 376
>gi|30409726|dbj|BAC76393.1| RAD23-like protein [Arabidopsis thaliana]
Length = 337
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 261/394 (66%), Positives = 289/394 (73%), Gaps = 62/394 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETT-- 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
T +T P P PAT IS+
Sbjct: 59 ------------------------ETVTT----------PIPEPVPAT-------ISSS- 76
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TPAP SA V S + VYG AASNL AG+NLE IQQILDMGGGTWDR+TVV
Sbjct: 77 ----TPAPDSAPVGS-----QGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVL 127
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANSPTQMPQPTQPAPVTSSGP 240
ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN P Q QPA +SGP
Sbjct: 128 ALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPANPPAQT---QQPAAAPASGP 184
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
NANPLDLFPQGLP+VG G GAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNP
Sbjct: 185 NANPLDLFPQGLPNVG-GNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNP 243
Query: 301 QLVRLIQEHQADFLRLINEPVQGG--EGNLGDQLAGLM--PQSIQVTPEEREAIERLEAM 356
L+RLIQ+HQADFLRLINEPV+GG GNL Q+A M PQ+IQVT EEREAIERLEAM
Sbjct: 244 NLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAM 303
Query: 357 GFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
GF+RA+VLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct: 304 GFERALVLEVFFACNKNEELAANYLLDHMHEFEE 337
>gi|115479081|ref|NP_001063134.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|55976306|sp|Q40742.2|RAD23_ORYSJ RecName: Full=Probable DNA repair protein RAD23; AltName:
Full=OsRAD23
gi|51091502|dbj|BAD36240.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|51091558|dbj|BAD36295.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113631367|dbj|BAF25048.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|125563673|gb|EAZ09053.1| hypothetical protein OsI_31314 [Oryza sativa Indica Group]
gi|125605644|gb|EAZ44680.1| hypothetical protein OsJ_29306 [Oryza sativa Japonica Group]
Length = 392
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 248/401 (61%), Positives = 300/401 (74%), Gaps = 25/401 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG++F +EV V DVK IET QG +YPA QQMLI+QGKVLKDDTTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRST-APTKAPQSSAP-------TPAATPATAPQT 113
ENKV ENSF+VIML + G+GS+ S A +KAP + AP PA+ AP T
Sbjct: 61 ENKVLENSFLVIMLRQ-----GKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPAT 115
Query: 114 AVPIS-TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGG 172
VP++ + PTP T +PA A V+ +SE+ YG A SNLVAG+NLE IQ IL+MGGG
Sbjct: 116 TVPVTVSAPTPTATASPAPA----VAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGG 171
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
WDRD V+ AL AA+NNPERAVEYLYSG+PEQ ++ PV P + Q AN PTQ Q TQP
Sbjct: 172 IWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PV--PPPSIQPAN-PTQASQATQP 227
Query: 233 A--PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQP 290
A + SSGPNA+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+LQP
Sbjct: 228 AAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQP 287
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQG-GEGNLGDQLAGLMPQSIQVTPEEREA 349
+LQELGKQNPQ+++LIQE+QA+FL LINEP +G E NL DQ MPQ+I VTPEE EA
Sbjct: 288 LLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEA 347
Query: 350 IERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
I RLEAMGFDRA+VL+VFFACNK+E+LAANYLLDHM+EF+D
Sbjct: 348 ILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388
>gi|116787088|gb|ABK24371.1| unknown [Picea sitchensis]
Length = 390
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 237/396 (59%), Positives = 294/396 (74%), Gaps = 13/396 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG F+++ +P DTV VK +IE +QG D YP QQ+LI+QGKVLKDDTT+E
Sbjct: 1 MKLSVKTLKGNRFEIDAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP-QTAVPISTE 120
+N++ EN F+V+MLTK K + G++ +++ + + TP A PA+ P + A P+ ++
Sbjct: 61 DNQITENGFLVVMLTKTKTSSAAGASSTSSASTIQHTQTSTPLA-PASNPVEAASPVVSQ 119
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P PA PA + ++ + + + + YG AAS LVAG+NLE IQQ+LDMGGG+WDRDTVV
Sbjct: 120 P-PAVAPATSVSAPETTAVQANADPYGEAASILVAGSNLEQTIQQMLDMGGGSWDRDTVV 178
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAP-----GNGQAANSPTQMPQPTQPAP 234
RALRAAYNNPERAVEYLYSGIPE AE+ PVAR+P GQ N A
Sbjct: 179 RALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNSGAAGQGTNDVVAAESDLAQAT 238
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
V S GPNA PL+LFPQGLP++G+ AG G+LDFLRN+PQFQ LR MVQANPQ+LQPMLQE
Sbjct: 239 VPSGGPNAAPLNLFPQGLPNLGA-TAGGGALDFLRNNPQFQALRTMVQANPQILQPMLQE 297
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLE 354
L KQNPQL+RLIQ+HQA+FL LINE EG+L Q A MPQSI VTPEEREAIERLE
Sbjct: 298 LSKQNPQLMRLIQDHQAEFLHLINEET---EGDLLGQFAAEMPQSINVTPEEREAIERLE 354
Query: 355 AMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
AMGFDRA+V+E F AC+KNEELAANYLL+H ++ED
Sbjct: 355 AMGFDRALVIEAFLACDKNEELAANYLLEHAADYED 390
>gi|1488297|gb|AAB65841.1| osRAD23 [Oryza sativa Japonica Group]
Length = 392
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 247/401 (61%), Positives = 298/401 (74%), Gaps = 25/401 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG++F +EV V DVK IET QG +YPA QQMLI+QGKVLKDDTTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRST-APTKAPQSSAP-------TPAATPATAPQT 113
ENKV ENSF+VIML + G+GS+ S A +KAP + AP PA+ AP T
Sbjct: 61 ENKVLENSFLVIMLRQ-----GKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPAT 115
Query: 114 AVPIS-TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGG 172
VP++ + PTP T +PA A V+ +SE+ YG A SNLVAG+NLE IQ IL+MGGG
Sbjct: 116 TVPVTVSAPTPTATASPAPA----VAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGG 171
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
WDRD V+ AL AA+NNPERAVEYLYSG+PEQ ++ PV P + Q AN PTQ Q TQP
Sbjct: 172 IWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PV--PPPSIQPAN-PTQASQATQP 227
Query: 233 A--PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQP 290
A + SSGPNA+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+LQP
Sbjct: 228 AAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQP 287
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQG-GEGNLGDQLAGLMPQSIQVTPEEREA 349
+LQELGKQNPQ+++LIQE+QA+FL LINEP +G E NL DQ MPQ+I VTPEE EA
Sbjct: 288 LLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEEDEA 347
Query: 350 IERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
I RLE MGFDRA+VL+VFFACNK+E+LAANYLLDHM+EF D
Sbjct: 348 ILRLEPMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFAD 388
>gi|224284592|gb|ACN40029.1| unknown [Picea sitchensis]
Length = 403
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 252/411 (61%), Positives = 297/411 (72%), Gaps = 30/411 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG FD+EV+P DTV +VK +IE VQG+ YP+ QQ+LIYQGKVLKD+TT+E
Sbjct: 1 MKVSVKTLKGNHFDIEVQPTDTVLNVKKQIEQVQGAQTYPSEQQLLIYQGKVLKDETTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPT-GEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
ENKV EN+F+V+ML+K K T G ST+ +AP S +P PA P A
Sbjct: 61 ENKVTENTFLVVMLSKTKATTAGTSSTQ-----QAPPSVSPAPAQNPVAPVPAAAAAQLS 115
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
PA A+ + + + +++ VYG AASNLVAGNNLE IQQILDMGGG+WDRDTVV
Sbjct: 116 SL---APATATPTAGAGTTQTDADVYGQAASNLVAGNNLEHVIQQILDMGGGSWDRDTVV 172
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQP-VAR-APGNGQAANSPTQMPQPTQPAPVTSS 238
RALRAAYNNPERAVEYLYSGIPE AEV P VAR P GQAAN P A S+
Sbjct: 173 RALRAAYNNPERAVEYLYSGIPETAEVAPPVARPTPSVGQAANPTAPAPAAAAAAAAASA 232
Query: 239 ----GPNANPLDLFPQGLPDVGSGAAGAGSL---------------DFLRNSPQFQVLRA 279
GPNA PLDLFPQGLP++G+GA DFLRN+PQFQ LR
Sbjct: 233 TAQAGPNAAPLDLFPQGLPNLGAGAGAGAGAGLGAGAGAGAGAGALDFLRNNPQFQALRT 292
Query: 280 MVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS 339
MVQANPQ+LQPMLQEL KQNPQL+RLIQ+HQADFLRL+NEPV+G EG+ +QLAG MPQ+
Sbjct: 293 MVQANPQILQPMLQELSKQNPQLMRLIQDHQADFLRLVNEPVEGAEGDFFNQLAGAMPQA 352
Query: 340 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
I VTPEEREAIERLEAMGFDRA+V+E F AC+KNE+LAANYLL+H ++ED
Sbjct: 353 INVTPEEREAIERLEAMGFDRALVIEAFLACDKNEQLAANYLLEHAGDYED 403
>gi|357158333|ref|XP_003578094.1| PREDICTED: probable DNA repair protein RAD23-like isoform 1
[Brachypodium distachyon]
Length = 395
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 241/404 (59%), Positives = 291/404 (72%), Gaps = 28/404 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV P D V DVK IE+ QG +VYPA QQMLI+QG VLKDDTTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQGTVLKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQ--------- 112
E+KV EN+F+VIML +NK S+ + A +K P + AP PA P
Sbjct: 61 ESKVLENNFLVIMLRQNKG----SSSAAPAKSKEPSNQAPPTQTVPANPPSQAPVVPAPP 116
Query: 113 -----TAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQIL 167
+ + PTP T +PASA V+ ++E+ YG AASNLVAG NLE IQ IL
Sbjct: 117 AAAAPAPIVPISAPTPTATASPASA----VAVSTEAETYGQAASNLVAGGNLEATIQSIL 172
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP 227
+MGGGTWDRDTV+RALRAA+NNPERAVEYLYSGIPE E+ + P Q
Sbjct: 173 EMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPS----AQPADPVQAL 228
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
Q TQPA V SSGPNA+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+
Sbjct: 229 QATQPA-VASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANPQI 287
Query: 288 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEG-NLGDQLAGLMPQSIQVTPEE 346
LQP+LQELGKQNPQ+++LIQ++QA+FLRLINEP +G E NL DQ A +PQ+I VTPEE
Sbjct: 288 LQPLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLDQFAEGVPQTIAVTPEE 347
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EAI RLE MGFDRA+VLEV+FACNK+E LAANYLLDHM+EF+D
Sbjct: 348 NEAILRLEGMGFDRALVLEVYFACNKDETLAANYLLDHMNEFDD 391
>gi|357124588|ref|XP_003563980.1| PREDICTED: putative DNA repair protein RAD23-3-like [Brachypodium
distachyon]
Length = 413
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 252/411 (61%), Positives = 301/411 (73%), Gaps = 22/411 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT+F++E PE +V +VK IE QG +VYPA QQMLI+QGK+LKDDTTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIEGAQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPA--TAPQTAVPIST 119
N VAENSF+VIML+K K ST S APT Q + P AATP+ P P ST
Sbjct: 61 GNNVAENSFLVIMLSKAKASPSGPSTASKAPTIQAQPATPVAAATPSGPATPVARTPPST 120
Query: 120 EPTPAPTPAPASAS--------VSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
P A AP SA ++V+A+ ++ VY AASNLV+G +LE +Q ILDMGG
Sbjct: 121 APVSASELAPPSAQPPAGSDIPAAAVTASGDADVYSQAASNLVSGGSLEQTVQHILDMGG 180
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ--- 228
GTW+RD VVRALRAAYNNPERA++YLYSGIPE E PVARAP Q A +P + Q
Sbjct: 181 GTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAPVQQATNPQALSQAAP 240
Query: 229 --PTQPAPVTSSGPNANPLDLFPQGLPDVGSG-----AAGAGSLDFLRNSPQFQVLRAMV 281
P QP+ V S+GPNANPL+LFPQG+P GS AGAG+LD LR PQFQ L A+V
Sbjct: 241 VPPVQPSGVASAGPNANPLNLFPQGVPTGGSNPGAGVGAGAGALDALRALPQFQALLALV 300
Query: 282 QANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE-PVQGGEGNLGDQLAGLMPQ-S 339
QANPQ+LQPMLQELGKQNPQ++RLIQE+QA+FLRL+NE P G GN+ QLA MPQ +
Sbjct: 301 QANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESGAAGNILGQLAAAMPQAA 360
Query: 340 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+ VTPEERE+I+RLEAMGF+R +VLEVFFACN++EELAANYLLDH HE+ED
Sbjct: 361 VTVTPEERESIQRLEAMGFNRELVLEVFFACNRDEELAANYLLDHGHEYED 411
>gi|226500270|ref|NP_001142065.1| uncharacterized protein LOC100274222 [Zea mays]
gi|194706976|gb|ACF87572.1| unknown [Zea mays]
gi|413954953|gb|AFW87602.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 248/403 (61%), Positives = 301/403 (74%), Gaps = 15/403 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT+F++E P+ +V DVK IET QG Y A QQMLIYQGK+LKD+TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT--AVPIST 119
N VAENSF+VIML+K K + ST +TA A + P A A+ +T P++T
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPVAT 120
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
T P+ P +A ++V+AT ++ VY AASNLV+GNNLE IQQILDMGGGTW+RDTV
Sbjct: 121 AETAPPSVQPQAAPAATVAATDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERDTV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAAN----SPTQ--MPQPTQPA 233
VRALRAAYNNPERA++YLYSGIPE E QPVARAP GQ N SP Q + P QP+
Sbjct: 181 VRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASPAQPAVALPVQPS 240
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSG-----AAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
P S+GPNANPL+LFPQG+P GS AG+G+LD LR PQFQ L +VQANPQ+L
Sbjct: 241 PA-SAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQFQALLQLVQANPQIL 299
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG-EGNLGDQLAGLMPQSIQVTPEER 347
QPMLQELGKQNPQ++RLIQE+QA+FLRL+NE +GG GN+ QLA +PQ++ VTPEER
Sbjct: 300 QPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAVPQTLTVTPEER 359
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EAI+RLE MGF+R +VLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 360 EAIQRLEGMGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 402
>gi|388499022|gb|AFK37577.1| unknown [Lotus japonicus]
Length = 376
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/394 (62%), Positives = 291/394 (73%), Gaps = 23/394 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKGT F ++V +D+V DVK IE QG+ VYPAAQQMLI+QGKVLKDDTTLE
Sbjct: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKA-----PQSSAPTPAATPATAPQTAVP 116
EN VAE+SFVVIML+KNK + ST + AP P SS P ++TP
Sbjct: 61 ENNVAEDSFVVIMLSKNKVSSSGASTAAAAPPNPVTAPQPASSVPPTSSTPEPPTSAVGQ 120
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
++ +P P +A+VSSV YG AASNL+AG+N++ +QQIL+MGGG+WDR
Sbjct: 121 GASNSEQSPVITPPTAAVSSV--------YGQAASNLIAGSNVDPTVQQILEMGGGSWDR 172
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
DTV+RALRAAYNNPERAVEYLYSGIPEQA+V VAR+P GQA N + PQP P
Sbjct: 173 DTVIRALRAAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSVRPPQPAVP---- 228
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
+ GPN NPL+LFPQG+P++G+ AG LDFLRN+ QFQ LRAMVQANPQ+LQPMLQELG
Sbjct: 229 TGGPNTNPLNLFPQGIPNMGA-EDNAGDLDFLRNNQQFQALRAMVQANPQILQPMLQELG 287
Query: 297 KQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM 356
KQNP L++LIQEHQ+DFL LINEP GE N LA M Q+I VTPEE EAI+RLE M
Sbjct: 288 KQNPHLMQLIQEHQSDFLNLINEP--EGEEN---PLAAGMTQAITVTPEEDEAIQRLEDM 342
Query: 357 GFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
GFDR +VLEVF ACN+NE+LAANYLLDH +EF+D
Sbjct: 343 GFDRDLVLEVFIACNRNEDLAANYLLDHQNEFDD 376
>gi|195636354|gb|ACG37645.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 245/403 (60%), Positives = 299/403 (74%), Gaps = 15/403 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT+F++E P+ +V DVK IET QG Y A QQMLIYQGK+LKD+TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT--AVPIST 119
N VAENSF+VIML+K K + ST + A A + P A+ +T P++T
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTTTAAKAPATLAQPAAPVPPAASVARTPTQAPVAT 120
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
T P+ P +A ++V+AT ++ VY AASNLV+GN+LE IQQILDMGGGTW+RDTV
Sbjct: 121 AETAPPSAQPQAAPAATVAATDDADVYSQAASNLVSGNSLEQTIQQILDMGGGTWERDTV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAAN----SPTQ--MPQPTQPA 233
VRALRAAYNNPERA++YLYSGIPE E QPVARAP GQ N SP Q + P QP+
Sbjct: 181 VRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASPAQPAVALPVQPS 240
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSG-----AAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
P S+GPNANPL+LFPQG+P GS AG+G+LD LR PQFQ L +VQANPQ+L
Sbjct: 241 PA-SAGPNANPLNLFPQGVPSGGSNPGVIPGAGSGALDALRQLPQFQALLQLVQANPQIL 299
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG-EGNLGDQLAGLMPQSIQVTPEER 347
QPMLQELGKQNPQ++RLIQE+QA+FLRL+NE +GG GN+ QLA +PQ++ VTPEER
Sbjct: 300 QPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAVPQTLTVTPEER 359
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EAI+RLE MGF+R +VLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 360 EAIQRLEGMGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 402
>gi|197717669|gb|ACH72675.1| RAD23 [Pinus sylvestris var. mongolica]
Length = 390
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 240/399 (60%), Positives = 293/399 (73%), Gaps = 19/399 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG F++E +P DTV VK +IE +QG D YP QQ+LI+QGKVLKDDTT+E
Sbjct: 1 MKLSVKTLKGNRFEIEAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEG-STRSTAPTKAPQ--SSAPTPAATPATAPQTAVPIS 118
+N + EN F+V+MLTK+K + G S+ STA T P S+ P PA+ P + A P+
Sbjct: 61 DNTITENGFLVVMLTKSKTSSAVGASSTSTASTVQPTQTSTPPAPASNPV---EVASPVV 117
Query: 119 TE-PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
++ P AP + ++ ++V A ++ YG AAS LVAG+NLE IQQ+LDMGGG+WDRD
Sbjct: 118 SQLPAVAPAASVSAPETTAVQANADP--YGEAASILVAGSNLEQTIQQMLDMGGGSWDRD 175
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAP-----GNGQAANSPTQMPQPTQ 231
TVVRALRAAYNNPERAVEYLYSGIPE AE+ PVAR+P Q N+ +
Sbjct: 176 TVVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNPGATDQGTNNVIAGESDSA 235
Query: 232 PAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPM 291
A S GPNA PL+LFPQGLP++ AAG G+LDFLRN+PQFQ LR MVQANPQ+LQPM
Sbjct: 236 EATAPSGGPNAAPLNLFPQGLPNL-GAAAGGGALDFLRNNPQFQALRTMVQANPQILQPM 294
Query: 292 LQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIE 351
LQEL KQNPQL+RLIQ+HQA+FL LINE +G+L Q A MPQSI VTPEEREAIE
Sbjct: 295 LQELSKQNPQLMRLIQDHQAEFLHLINEET---DGDLLGQFAAEMPQSINVTPEEREAIE 351
Query: 352 RLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
RLEAMGFDRA+V+E F AC+KNEELAANYLL+H ++ED
Sbjct: 352 RLEAMGFDRALVIEAFLACDKNEELAANYLLEHAADYED 390
>gi|115467470|ref|NP_001057334.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|53793157|dbj|BAD54365.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|53793163|dbj|BAD54370.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113595374|dbj|BAF19248.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|125596775|gb|EAZ36555.1| hypothetical protein OsJ_20893 [Oryza sativa Japonica Group]
gi|215692584|dbj|BAG88004.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 413
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/418 (61%), Positives = 300/418 (71%), Gaps = 36/418 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT+F++E PE +V +VK IE+ QG +VYPA QQMLI+QGK+LKDDTTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
NKVAENSF+VIML+K K + ST S AP QS TP A+ A P P+ T
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVS--QSQPATPVASVARTPPPQAPVVT-- 116
Query: 122 TPAPTPAPASA--------------SVSSVSATSESGVYGHAASNLVAGNNLEGAIQQIL 167
P PAP SA ++V+A+S++ VY AASNLV+G+NLE IQQIL
Sbjct: 117 ---PEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASNLVSGSNLEQTIQQIL 173
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE-VQPVARAP-----GNGQAAN 221
DMGGGTW+RD VVRALRAAYNNPERA++YLYSGIPE E QPVARAP GN Q +
Sbjct: 174 DMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVARAPAAVQQGNPQVPS 233
Query: 222 SPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG-------AAGAGSLDFLRNSPQF 274
P P +SGPNANPL+LFPQG+P GS AGAG+LD LR PQF
Sbjct: 234 QAQAAPPPPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAGAGAGALDALRQLPQF 293
Query: 275 QVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGE--GNLGDQL 332
Q L A+VQANPQ+LQPMLQELGKQNPQ++RLIQE+QA+FLRL+NE G GN+ QL
Sbjct: 294 QALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPDSGAAGGNILGQL 353
Query: 333 AGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
A MPQ++ VTPEEREAI+RLEAMGF+R +VLEVFFACNK+EELAANYLLDH HEFED
Sbjct: 354 AAAMPQALTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELAANYLLDHGHEFED 411
>gi|125554823|gb|EAZ00429.1| hypothetical protein OsI_22453 [Oryza sativa Indica Group]
Length = 413
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/418 (61%), Positives = 300/418 (71%), Gaps = 36/418 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT+F++E PE +V +VK IE+ QG +VYPA QQMLI+QGK+LKDDTTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
NKVAENSF+VIML+K K + ST S AP QS TP A+ A P P+ T
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVS--QSQPATPVASVARTPPPQAPVVT-- 116
Query: 122 TPAPTPAPASA--------------SVSSVSATSESGVYGHAASNLVAGNNLEGAIQQIL 167
P PAP SA ++V+A+S++ VY AASNLV+G+NLE IQQIL
Sbjct: 117 ---PEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASNLVSGSNLEQTIQQIL 173
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE-VQPVARAP-----GNGQAAN 221
DMGGGTW+RD VVRALRAAYNNPERA++YLYSGIPE E QPVARAP GN Q +
Sbjct: 174 DMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVARAPAAVQQGNPQVPS 233
Query: 222 SPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG-------AAGAGSLDFLRNSPQF 274
P P +SGPNANPL+LFPQG+P GS AGAG+LD LR PQF
Sbjct: 234 QAQAAPPPPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAGAGAGALDALRQLPQF 293
Query: 275 QVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGE--GNLGDQL 332
Q L A+VQANPQ+LQPMLQELGKQNPQ++RLIQE+QA+FLRL+NE G GN+ QL
Sbjct: 294 QALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPDSGTAGGNILGQL 353
Query: 333 AGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
A MPQ++ VTPEEREAI+RLEAMGF+R +VLEVFFACNK+EELAANYLLDH HEFED
Sbjct: 354 AAAMPQALTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELAANYLLDHGHEFED 411
>gi|449530301|ref|XP_004172134.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 248/392 (63%), Positives = 284/392 (72%), Gaps = 52/392 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKG+ F++EV+P DTV DVK IETVQG+DVYPAAQQMLI+QGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP--TKAPQSSAPTPAATPATAPQTAVPIST 119
ENKVAENSF+VIMLTKNK +G S+ + A KAPQS+AP PAATP +ST
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKAPQSTAPAPAATP---------VST 111
Query: 120 EPTPAPTPAPASASVS-------------------------------------SVSATSE 142
P PT AP ASV+ + + +
Sbjct: 112 TEVPLPTSAP-PASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPD 170
Query: 143 SGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
+ VY AASNLVAG+NLE +QQILDMG G WDRDTVVRALRAAYNNPERAV+YLYSGIP
Sbjct: 171 ADVYSQAASNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIP 230
Query: 203 EQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS-SGPNANPLDLFPQGLPDVGSGAAG 261
EQ E P AR P QA+N Q QP QPA S +GPNANPLDLFPQGLP++GSGA G
Sbjct: 231 EQVEAPP-ARVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVG 289
Query: 262 AGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV 321
+GSLDFLRNSPQFQ LRAMV+ANPQ+LQPMLQELGKQNPQL+RLIQ+HQ DFLRLINEP+
Sbjct: 290 SGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPL 349
Query: 322 QGGEGNLGDQLAGLMPQSIQVTPEEREAIERL 353
+ GEGN+ QLA MPQ+I VTPEEREAI+R+
Sbjct: 350 E-GEGNILGQLAEAMPQAITVTPEEREAIQRV 380
>gi|449434628|ref|XP_004135098.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 248/392 (63%), Positives = 284/392 (72%), Gaps = 52/392 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKG+ F++EV+P DTV DVK IETVQG+DVYPAAQQMLI+QGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP--TKAPQSSAPTPAATPATAPQTAVPIST 119
ENKVAENSF+VIMLTKNK +G S+ + A KAPQS+AP PAATP +ST
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKAPQSTAPAPAATP---------VST 111
Query: 120 EPTPAPTPAPASASVS-------------------------------------SVSATSE 142
P PT AP ASV+ + + +
Sbjct: 112 TEVPLPTSAP-PASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPD 170
Query: 143 SGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
+ VY AASNLVAG+NLE +QQILDMG G WDRDTVVRALRAAYNNPERAV+YLYSGIP
Sbjct: 171 ADVYSQAASNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIP 230
Query: 203 EQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS-SGPNANPLDLFPQGLPDVGSGAAG 261
EQ E P AR P QA+N Q QP QPA S +GPNANPLDLFPQGLP++GSGA G
Sbjct: 231 EQVEAPP-ARVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVG 289
Query: 262 AGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV 321
+GSLDFLRNSPQFQ LRAMV+ANPQ+LQPMLQELGKQNPQL+RLIQ+HQ DFLRLINEP+
Sbjct: 290 SGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPL 349
Query: 322 QGGEGNLGDQLAGLMPQSIQVTPEEREAIERL 353
+ GEGN+ QLA MPQ+I VTPEEREAI+R+
Sbjct: 350 E-GEGNILGQLAEAMPQAITVTPEEREAIQRV 380
>gi|125561624|gb|EAZ07072.1| hypothetical protein OsI_29318 [Oryza sativa Indica Group]
Length = 406
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 241/403 (59%), Positives = 294/403 (72%), Gaps = 18/403 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KTLKG+SF+++V+P V DVK IE QG +VYPA QQMLI+QG VLK+DTTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV EN+F+VIML+K + S+ + PTK P P A P P+S EP
Sbjct: 61 ENKVVENNFIVIMLSKKGS-SSAASSTAKEPTKQPSVDRAIPTAPATQPPAPPAPVS-EP 118
Query: 122 TPAPTPAPASASVSSVSATSESGV---YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
AP P +AS + + T+ S YG AASNLVAG+NLEG +Q IL+MGGG WDRDT
Sbjct: 119 VTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDT 178
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARA---PGNGQAA--------NSPTQMP 227
V+RALRAAYNNPERAVEYLY+G+PEQAE +A P QA P+Q P
Sbjct: 179 VMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPAAVQPVDPSQAP 238
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
Q Q + + SSGPNANPLDLFPQ LP+ S AG G+LD LRN+ QF+ L ++VQANPQ+
Sbjct: 239 QSAQLS-IPSSGPNANPLDLFPQVLPN-ASANAGGGNLDVLRNNSQFRGLLSLVQANPQI 296
Query: 288 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEER 347
LQP+LQELGKQNPQ+++LIQE+QA+FLRLINEP +G EGNL DQ A MPQ++ VTPEE
Sbjct: 297 LQPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMPQTVAVTPEEN 356
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EAI+RLE MGFDR +VLEVFFACNK+E+LAANYLLDHM+EF+D
Sbjct: 357 EAIQRLEQMGFDRDLVLEVFFACNKDEQLAANYLLDHMNEFDD 399
>gi|194700232|gb|ACF84200.1| unknown [Zea mays]
gi|195625372|gb|ACG34516.1| DNA repair protein RAD23 [Zea mays]
gi|414885362|tpg|DAA61376.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 386
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/395 (59%), Positives = 288/395 (72%), Gaps = 24/395 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV P D V DVK IE++Q YPA QQ+LI+QGKVLKDDTTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAV----PI 117
EN+V EN+F+VIML +NK GS+ S AP K + AP+ PAT PQT+ P
Sbjct: 61 ENQVVENNFLVIMLRQNK-----GSS-SAAPAKVTANQAPSTQTVPATPPQTSAAPDAPA 114
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
P AP +++ +V+ ++E+ YG A SNLVAG+NLEG I+ IL+MGGGTWDRD
Sbjct: 115 PIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGGTWDRD 174
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
TV+RALRAAYNNPERAVEYLYSGIPEQ EV AP P Q QP Q
Sbjct: 175 TVLRALRAAYNNPERAVEYLYSGIPEQMEVP----APPPSSQPVDPVQAVQPAQ------ 224
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
+GPNANPLDLFPQ LP+ S A G+LD LRN+ QFQ L +VQANPQ+LQP+LQEL K
Sbjct: 225 AGPNANPLDLFPQSLPN-DSANANTGNLDVLRNNSQFQNLLGLVQANPQILQPLLQELRK 283
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGN--LGDQLAGLMPQSIQVTPEEREAIERLEA 355
QNP++++LIQE+QA+F+RLI+EP++G E N + DQ+A ++I VTPEE EAI RLE
Sbjct: 284 QNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEENEAILRLEG 342
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
MGFDRA+VLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 343 MGFDRALVLEVFFACNKNEQLAANYLLDHMHEFDN 377
>gi|115476516|ref|NP_001061854.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|38175472|dbj|BAD01169.1| putative osRAD23 [Oryza sativa Japonica Group]
gi|113623823|dbj|BAF23768.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|125603492|gb|EAZ42817.1| hypothetical protein OsJ_27402 [Oryza sativa Japonica Group]
gi|215694056|dbj|BAG89255.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 406
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 241/403 (59%), Positives = 293/403 (72%), Gaps = 18/403 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KTLKG+SF+++V+P V DVK IE QG +VYPA QQMLI+QG VLK+DTTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV EN+F+VIML+K + S+ + PTK P P A P P+S EP
Sbjct: 61 ENKVVENNFIVIMLSKKGS-SSAASSTAKEPTKQPSVDRAIPTAPATQPPAPPAPVS-EP 118
Query: 122 TPAPTPAPASASVSSVSATSESGV---YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
AP P +AS + + T+ S YG AASNLVAG+NLEG +Q IL+MGGG WDRDT
Sbjct: 119 VTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDT 178
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARA---PGNGQAA--------NSPTQMP 227
V+RALRAAYNNPERAVEYLY+G+PEQAE +A P QA P+Q P
Sbjct: 179 VMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPAAVQPVDPSQAP 238
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
Q Q + + SSGPNANPLDLFPQ LP+ S AG G+LD LRN+ QF+ L ++VQANPQ+
Sbjct: 239 QSAQLS-IPSSGPNANPLDLFPQVLPN-ASANAGGGNLDVLRNNSQFRGLLSLVQANPQI 296
Query: 288 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEER 347
LQP+LQELGKQNPQ+++LIQE+QA+FLRLINEP +G EGNL DQ A MPQ++ VTPEE
Sbjct: 297 LQPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMPQTVAVTPEEN 356
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EAI+RLE MGFDR +VLEVFFACNK+E LAANYLLDHM+EF+D
Sbjct: 357 EAIQRLEQMGFDRDLVLEVFFACNKDELLAANYLLDHMNEFDD 399
>gi|326501072|dbj|BAJ98767.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 414
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 247/417 (59%), Positives = 295/417 (70%), Gaps = 33/417 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGTSF++E PE +V +VK IE+ QG +VYPA Q M+IYQGK+LKDDTTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAV--PIST 119
NKVAENSF+VIML+K K + S+ S AP Q + P AATP +A P S
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQPATPVAAATPPVPVASAARSPPSQ 120
Query: 120 EPTPAPTPAPASASVSSVS--------ATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
P A PAP SA S+VS A+ ++ VY AASNLV+G LE +QQILDMGG
Sbjct: 121 APVAASEPAPPSAQPSAVSDTPAAAVTASGDADVYSQAASNLVSGGILEQTVQQILDMGG 180
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA------------RAPGNGQA 219
GTW+RD VVRALRAAYNNPERA++YLYSGIPE E PVA +AP QA
Sbjct: 181 GTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQNLQAPSQAQA 240
Query: 220 ANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPD-----VGSGAAGAGSLDFLRNSPQF 274
A P QP+ S+GPNANPL+LFPQG+P AGAG+LD LR PQF
Sbjct: 241 APLPA-----VQPSGGVSAGPNANPLNLFPQGVPSGGANAGAGVGAGAGALDALRQLPQF 295
Query: 275 QVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE-PVQGGEGNLGDQLA 333
Q L A+VQANPQ+LQPMLQELGKQNPQ++RLIQE+QA+FLRL+NE P G GN+ LA
Sbjct: 296 QALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESGAGGNILGALA 355
Query: 334 GLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
MPQ++QVTPEEREAI+RLE+MGF+R +VLEVFFACN++EELAANYLLDH HEFE+
Sbjct: 356 AQMPQAVQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHEFEE 412
>gi|357147838|ref|XP_003574508.1| PREDICTED: probable DNA repair protein RAD23-like [Brachypodium
distachyon]
Length = 394
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 231/394 (58%), Positives = 285/394 (72%), Gaps = 12/394 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KTLKG+SF++EV P V D+K IE QG +VYPA QQMLI+QG VLK+DTTLE
Sbjct: 1 MKVSIKTLKGSSFEIEVDPTSKVVDLKKLIENTQGQNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV EN+F+VIML+K K T S + PTK P P A P P++ P
Sbjct: 61 ENKVLENNFIVIMLSK-KGSTSAASGTAKEPTKQPMVDRAAPVAPAMQLPAEQTPVT--P 117
Query: 122 TPAPTPAPASASVSSVSATSESGV-----YGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
AP P + + + +A + + YG AAS+LVAG+NLEG +Q IL+MGGG WDR
Sbjct: 118 VSAPVPTALAVAPPAATAAAAAASTQADPYGQAASSLVAGSNLEGTVQSILEMGGGAWDR 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
DTVV ALRAA+NNPERAVEYLY+G+PEQ P P GQ + P Q PQ Q V
Sbjct: 178 DTVVHALRAAFNNPERAVEYLYTGVPEQEAPAPAQEPPALGQQGD-PVQAPQSQQA--VA 234
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
SSGPNANPLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+LQP+LQELG
Sbjct: 235 SSGPNANPLDLFPQVLPNASANAAG-GNLDVLRNNSQFRGLLSLVQANPQILQPLLQELG 293
Query: 297 KQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM 356
KQNPQ+++LIQE+QA+FLRLINEP +G EGNL +Q +PQ++ VTP E EAI+RLE M
Sbjct: 294 KQNPQILQLIQENQAEFLRLINEPAEGAEGNLLEQFGAGVPQTVAVTPAENEAIQRLEHM 353
Query: 357 GFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
GFDR +VLEVFFACNK+E+LAANYLLDHM+EF+D
Sbjct: 354 GFDRDLVLEVFFACNKDEQLAANYLLDHMNEFDD 387
>gi|414885365|tpg|DAA61379.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 382
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 234/391 (59%), Positives = 286/391 (73%), Gaps = 20/391 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV P D V DVK IE++Q YPA QQ+LI+QGKVLKDDTTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
EN+V EN+F+VIML +NK GS+ S AP K + AP+ PAT PQT+
Sbjct: 61 ENQVVENNFLVIMLRQNK-----GSS-SAAPAKVTANQAPSTQTVPATPPQTSAAPDAPA 114
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
AP +++ +V+ ++E+ YG A SNLVAG+NLEG I+ IL+MGGGTWDRDTV+R
Sbjct: 115 PIAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGGTWDRDTVLR 174
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAVEYLYSGIPEQ EV AP P Q QP Q +GPN
Sbjct: 175 ALRAAYNNPERAVEYLYSGIPEQMEVP----APPPSSQPVDPVQAVQPAQ------AGPN 224
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
ANPLDLFPQ LP+ S A G+LD LRN+ QFQ L +VQANPQ+LQP+LQEL KQNP+
Sbjct: 225 ANPLDLFPQSLPN-DSANANTGNLDVLRNNSQFQNLLGLVQANPQILQPLLQELRKQNPR 283
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGN--LGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
+++LIQE+QA+F+RLI+EP++G E N + DQ+A ++I VTPEE EAI RLE MGFD
Sbjct: 284 VMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEENEAILRLEGMGFD 342
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFED 390
RA+VLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 343 RALVLEVFFACNKNEQLAANYLLDHMHEFDN 373
>gi|30409730|dbj|BAC76395.1| RAD23-like protein [Arabidopsis thaliana]
Length = 343
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 233/391 (59%), Positives = 274/391 (70%), Gaps = 51/391 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATP-ATAPQTAVPIST 119
EN V ENSF+VIML+K K P+G STA AP ++ P ATP +AP +VP+
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSG----ASTASAPAPSATQPQTVATPQVSAPTASVPV-- 113
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PT A+A+ + +A+ ++ VYG AASNLVAG LE +QQILDMGGG+WDRDTV
Sbjct: 114 -----PTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTV 168
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
VRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A +P PQ + G
Sbjct: 169 VRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGG 228
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
PNANPL+LFPQG+P +GA +LDFLRNS QFQ LRAMVQANPQ+LQPMLQE
Sbjct: 229 PNANPLNLFPQGMPAADAGAGAG-NLDFLRNSQQFQALRAMVQANPQILQPMLQE----- 282
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
QL MPQ++ VTPEEREAIERLE MGFD
Sbjct: 283 -------------------------------QLEAAMPQAVTVTPEEREAIERLEGMGFD 311
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFED 390
RA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 312 RAMVLEVFFACNKNEELAANYLLDHMHEFED 342
>gi|226496401|ref|NP_001149140.1| LOC100282762 [Zea mays]
gi|195625028|gb|ACG34344.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 236/400 (59%), Positives = 289/400 (72%), Gaps = 12/400 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT+F++E P+ +V +VK IET QG YPA QQMLIYQGK+LKD+TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
N VAENSF+VIML+K K + ST + A A + PA + P T P++T
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRTP-TQAPVATAE 119
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P+ +A ++ +A+ ++ VY AASNLV+GNNLE IQQILDMGGGTW+R TVVR
Sbjct: 120 TAPPSAQTQAAPAATAAASDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERGTVVR 179
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP-----APVT 236
ALRAAYNNPERA++YLYSGIPE E PVARAP GQ N P +
Sbjct: 180 ALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAAGQQTNQQAPSPAQPAAAPPVQSSAA 239
Query: 237 SSGPNANPLDLFPQGLPDVGSG-----AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPM 291
S+ PNANPL+LFPQG+P G+ AAG+G+LD LR PQFQ L +VQANPQ+LQPM
Sbjct: 240 SARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQLPQFQALLQLVQANPQILQPM 299
Query: 292 LQELGKQNPQLVRLIQEHQADFLRLINEPVQGG-EGNLGDQLAGLMPQSIQVTPEEREAI 350
LQELGKQNPQ++RLIQE+QA+F+RL+NE +GG GN+ QLA MPQS+ VTPEEREAI
Sbjct: 300 LQELGKQNPQILRLIQENQAEFVRLVNETPEGGPGGNILGQLAAAMPQSVTVTPEEREAI 359
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+RLE MGF+ +VLEVFFACNK+EELAANYLLDH HEF++
Sbjct: 360 QRLEGMGFNHELVLEVFFACNKDEELAANYLLDHGHEFDE 399
>gi|195622128|gb|ACG32894.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 236/400 (59%), Positives = 289/400 (72%), Gaps = 12/400 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT+F++E P+ +V +VK IET QG YPA QQMLIYQGK+LKD+TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
N VAENSF+VIML+K K + ST + A A + PA + P T P++T
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRTP-TQAPVATAE 119
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P+ +A ++ +A+ ++ VY AASNLV+GNNLE IQQILDMGGGTW+R TVVR
Sbjct: 120 TAPPSAQTQAAPAATAAASDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERGTVVR 179
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP-----APVT 236
ALRAAYNNPERA++YLYSGIPE E PVA AP GQ N P +
Sbjct: 180 ALRAAYNNPERAIDYLYSGIPENVEAPPVAGAPAAGQQTNQQAPSPAQPAAAPPVQSSAA 239
Query: 237 SSGPNANPLDLFPQGLPDVGSG-----AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPM 291
S+ PNANPL+LFPQG+P G+ AAG+G+LD LR PQFQ L +VQANPQ+LQPM
Sbjct: 240 SARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQLPQFQALLQLVQANPQILQPM 299
Query: 292 LQELGKQNPQLVRLIQEHQADFLRLINEPVQGG-EGNLGDQLAGLMPQSIQVTPEEREAI 350
LQELGKQNPQ++RLIQE+QA+F+RL+NE +GG GN+ QLA MPQS+ VTPEEREAI
Sbjct: 300 LQELGKQNPQILRLIQENQAEFVRLVNETPEGGPGGNILGQLAAAMPQSVTVTPEEREAI 359
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+RLE MGF+R +VLEVFFACNK+EELAANYLLDH HEF++
Sbjct: 360 QRLEGMGFNRELVLEVFFACNKDEELAANYLLDHGHEFDE 399
>gi|356521678|ref|XP_003529480.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 363
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/393 (56%), Positives = 278/393 (70%), Gaps = 34/393 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP--QT-AVPIS 118
ENKV+E+ F+V+ML+K+K +G + S P P ++ +TP + P QT A S
Sbjct: 61 ENKVSEDGFLVVMLSKSKT-SGSAAASSVQPASNPATTVSMSNSTPPSDPPVQTQAANNS 119
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T T APT ++VSA + YG AASNLVAG+NLE IQQI+DMGGG WDRDT
Sbjct: 120 TSSTDAPT--------TNVSADT----YGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDT 167
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V RALRAAYNNPERA++YLYSGIPE AEV PV + G A PV
Sbjct: 168 VSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGA------------VPV-- 213
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
GPN++PL++FPQ + S AG GSLDFLRN+PQFQ LR+MVQ+NPQ+LQP+LQELGK
Sbjct: 214 -GPNSSPLNMFPQ--ETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGK 270
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMG 357
QNP L+RLIQEH +FL+LINEPV+G EG++ +Q MP +I VTP E+EAI RLEAMG
Sbjct: 271 QNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQEAIGRLEAMG 330
Query: 358 FDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
FDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 331 FDRASVIEAFLACDRDEQLAANYLLENAGDFED 363
>gi|255641364|gb|ACU20959.1| unknown [Glycine max]
Length = 363
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/393 (56%), Positives = 278/393 (70%), Gaps = 34/393 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP--QT-AVPIS 118
ENKV+E+ F+V+ML+K+K +G + S P P ++ T +TP + P QT A S
Sbjct: 61 ENKVSEDGFLVVMLSKSKT-SGSAAASSVQPASNPPTTVSTSNSTPPSDPPVQTQAANNS 119
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T T APT ++VSA + YG AASNLVAG+NLE IQQI+DMGGG WDRDT
Sbjct: 120 TSSTDAPT--------TNVSADT----YGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDT 167
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V RALRAAYNNPERA++YLYSGIPE AEV PV + G A PV
Sbjct: 168 VSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGA------------VPV-- 213
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
GPN++PL++FPQ + S AG GSLDFLRN+PQFQ LR+MVQ+NPQ+LQP+LQELGK
Sbjct: 214 -GPNSSPLNMFPQ--ETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGK 270
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMG 357
QNP L+RLIQEH +FL+LINEPV G EG++ +Q MP +I VTP E+EAI RLEAMG
Sbjct: 271 QNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFEQPEQDMPHAINVTPTEQEAIGRLEAMG 330
Query: 358 FDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
FDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 331 FDRASVIEAFLACDRDEQLAANYLLENAGDFED 363
>gi|358249346|ref|NP_001240038.1| uncharacterized protein LOC100819019 [Glycine max]
gi|255647960|gb|ACU24437.1| unknown [Glycine max]
Length = 363
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/393 (56%), Positives = 278/393 (70%), Gaps = 34/393 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP--QT-AVPIS 118
ENKV+E+ F+V+ML+K+K +G + S P P ++ T +TP + P QT A S
Sbjct: 61 ENKVSEDGFLVVMLSKSKT-SGSAAASSVQPASNPPTTVSTSNSTPPSDPPVQTQAANNS 119
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T T APT ++VSA + YG AASNLVAG+NLE IQQI+DMGGG WDRDT
Sbjct: 120 TSSTDAPT--------TNVSADT----YGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDT 167
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V RALRAAYNNPERA++YLYSGIPE AEV PV + G A PV
Sbjct: 168 VSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGA------------VPV-- 213
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
GPN++PL++FPQ + S AG GSLDFLRN+PQFQ LR+MVQ+NPQ+LQP+LQELGK
Sbjct: 214 -GPNSSPLNMFPQ--ETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGK 270
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMG 357
QNP L+RLIQEH +FL+LINEPV G EG++ +Q MP +I VTP E+EAI RLEAMG
Sbjct: 271 QNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFEQPEQDMPHAINVTPAEQEAIGRLEAMG 330
Query: 358 FDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
FDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 331 FDRASVIEAFLACDRDEQLAANYLLENAGDFED 363
>gi|449501601|ref|XP_004161413.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 401
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 226/409 (55%), Positives = 283/409 (69%), Gaps = 28/409 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+ DTV VK IE VQG D YP QQ+LI+ GKVLKD++TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT----APQTAVPI 117
ENKV+E F+V+ML+K+K G + ST P + P + P ++TPA +P A +
Sbjct: 61 ENKVSEEGFLVVMLSKSKTSVSAGQS-STQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQV 119
Query: 118 STEPTPAP-------TPAPASASVSSVSATS------ESGVYGHAASNLVAGNNLEGAIQ 164
+ PTPAP T AP+SA ++ S + ++ YG AASNLVAGNNLE +Q
Sbjct: 120 TPSPTPAPQAPTQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQ 179
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSP 223
Q++DMGGG WDR+TVVRALRAAYNNPERAV+YLYSGIPE AEV PV R G+GQA +
Sbjct: 180 QLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRF-GSGQATETD 238
Query: 224 TQMPQPTQPAPVTSSGPNANPLDLFPQ--GLPDVGSGAAGAGSLDFLRNSPQFQVLRAMV 281
+P P S PN PL++FPQ G G GSL+FLRN+PQFQ LR MV
Sbjct: 239 ASVPAPV------SGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMV 292
Query: 282 QANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQ 341
NPQ+LQPMLQELGKQNPQL+RLIQ+H A+FL+LINEPV EG + +Q MP +I
Sbjct: 293 HTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAIN 352
Query: 342 VTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
VTP E+ AIERLEAMGFDRA+V+E F AC++NEELAANYLL++ +F+D
Sbjct: 353 VTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD 401
>gi|224101717|ref|XP_002312393.1| predicted protein [Populus trichocarpa]
gi|222852213|gb|EEE89760.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/246 (82%), Positives = 215/246 (87%), Gaps = 5/246 (2%)
Query: 145 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204
VYG AAS+LVAG+NLE A+QQILDMGGGTWDRDTVVRALRAAYNNPERA+EYLYSGIPEQ
Sbjct: 91 VYGQAASSLVAGSNLEVAVQQILDMGGGTWDRDTVVRALRAAYNNPERAIEYLYSGIPEQ 150
Query: 205 AEVQPVARAPGNGQAANSPTQMPQ--PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA 262
AE PVA P GQA P PQ PTQ A V S GPNANPLDLFPQGLP+VGSGA GA
Sbjct: 151 AEAPPVAHMPLGGQA---PAAQPQQHPTQTAAVPSGGPNANPLDLFPQGLPNVGSGAGGA 207
Query: 263 GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ 322
G+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNP L+RLIQEHQ DFLRLINEPV+
Sbjct: 208 GTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQDDFLRLINEPVE 267
Query: 323 GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
GEGN+ QLA MPQ++ VTPEEREAIERLEAMGFDRA+VLEVFFACNKNEELAANYLL
Sbjct: 268 SGEGNVLGQLAAAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 327
Query: 383 DHMHEF 388
DHMHEF
Sbjct: 328 DHMHEF 333
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 68/76 (89%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTLKG++FD+EVKPEDTV DVK KIET QG VYPA QQMLI+Q KVLKD+TTL+
Sbjct: 1 MRIFVKTLKGSTFDIEVKPEDTVADVKKKIETAQGVAVYPAEQQMLIHQAKVLKDNTTLD 60
Query: 62 ENKVAENSFVVIMLTK 77
ENK+ ENSFVVIML+K
Sbjct: 61 ENKIVENSFVVIMLSK 76
>gi|356567282|ref|XP_003551850.1| PREDICTED: putative DNA repair protein RAD23-4-like [Glycine max]
Length = 375
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 228/390 (58%), Positives = 277/390 (71%), Gaps = 22/390 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKGT F ++V P+DTV VK IET QG+DVYPAAQQMLI+QGKVL D TTLE
Sbjct: 1 MKINVKTLKGTHFVLQVNPQDTVAVVKKNIETAQGADVYPAAQQMLIHQGKVLNDATTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAV---PIS 118
ENKV EN+FVVIML+KNK +G S S T+ PQSS P ++ + P +AV +
Sbjct: 61 ENKVVENNFVVIMLSKNKVSSGASSAPSNLGTQ-PQSSL-PPTSSTSQPPASAVGQGESN 118
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
+E +P TP P A S +Y HAASNL+AG+NLE IQQIL+MGGG WDRDT
Sbjct: 119 SEQSPVITP-PTIAVPS---------IYDHAASNLMAGSNLETTIQQILEMGGGNWDRDT 168
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V AL AA+NNPERA+EYLYSGIPE+A+V R+ GQA NS Q QP P +
Sbjct: 169 VTGALHAAFNNPERAIEYLYSGIPERADVPAAVRSLITGQAENSSIQSTQPAVP----TG 224
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
GPN NPL+LFPQGLP++ S G LD LRN +FQ LR ++ NPQ+LQPM+QELG+Q
Sbjct: 225 GPNTNPLNLFPQGLPNM-SAIDNRGDLDSLRNREEFQALRETMRENPQILQPMIQELGQQ 283
Query: 299 NPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGF 358
NPQL+++IQ+HQ D L L+NEP G+ NL QL ++ ++ +TPEE EAI+RLEAMGF
Sbjct: 284 NPQLMQIIQDHQEDILDLMNEP--EGDENLQSQLDSMISGTVTITPEENEAIQRLEAMGF 341
Query: 359 DRAIVLEVFFACNKNEELAANYLLDHMHEF 388
R IV+E FFACNKNE+LAANYLLDH EF
Sbjct: 342 HRDIVVEAFFACNKNEDLAANYLLDHPDEF 371
>gi|226528090|ref|NP_001149553.1| LOC100283179 [Zea mays]
gi|194700938|gb|ACF84553.1| unknown [Zea mays]
gi|195627978|gb|ACG35819.1| DNA repair protein RAD23 [Zea mays]
gi|414589470|tpg|DAA40041.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 390
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 227/400 (56%), Positives = 278/400 (69%), Gaps = 30/400 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV+P D V VK IE +Q YPA QQ+LI+QGKVL DDTTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGKVLSDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
EN+V EN+F+VIML +NK + ++TA P + P + AP PI P
Sbjct: 61 ENQVTENNFLVIMLRQNKGSSSAAPAKTTANQAPPTQTVPVVPPQTSAAPAAPAPIV--P 118
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A +++ +V+ ++E+ YG AASNLVAG+NLEG IQ IL+MGGG WDRDTV+R
Sbjct: 119 VSALAATATASAAPAVAVSTEADSYGQAASNLVAGSNLEGTIQSILEMGGGIWDRDTVLR 178
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP--QPTQPAPVTS-- 237
ALR AYNNPERAVEYLYSGIPEQ +V PT P QP P
Sbjct: 179 ALRVAYNNPERAVEYLYSGIPEQMDV---------------PTSPPSIQPVNPVQAAQAA 223
Query: 238 -----SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPML 292
SGPNANPLDLFPQ LP+ S AG G+LD LRN+ QFQ L +VQANPQ+LQP+L
Sbjct: 224 QTAAPSGPNANPLDLFPQSLPN-ASANAGTGNLDVLRNNVQFQNLLGLVQANPQILQPLL 282
Query: 293 QELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN--LGDQLAGLMPQSIQVTPEEREAI 350
QELGKQNPQ+++LIQE+QA+F+R+INEP++G E N + DQ+A ++I VTPEE EAI
Sbjct: 283 QELGKQNPQVMQLIQENQAEFMRMINEPLEGDEENEMMLDQMAD-AAETIAVTPEENEAI 341
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
RLE MGFDRA+VLEVFFACNKNE+L ANYLLDHMHEF++
Sbjct: 342 LRLEGMGFDRALVLEVFFACNKNEQLTANYLLDHMHEFDN 381
>gi|356521682|ref|XP_003529482.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 3
[Glycine max]
Length = 348
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/390 (55%), Positives = 266/390 (68%), Gaps = 43/390 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV+E+ F+V+ML+K+K SA + PA+ P T V +S
Sbjct: 61 ENKVSEDGFLVVMLSKSKT----------------SGSAAASSVQPASNPATTVSMSNST 104
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P+ P S + YG AASNLVAG+NLE IQQI+DMGGG WDRDTV R
Sbjct: 105 PPSDPPVQTHVSADT---------YGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSR 155
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAAYNNPERA++YLYSGIPE AEV PV + G A PV GP
Sbjct: 156 ALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGA------------VPV---GP 200
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
N++PL++FPQ + S AG GSLDFLRN+PQFQ LR+MVQ+NPQ+LQP+LQELGKQNP
Sbjct: 201 NSSPLNMFPQ--ETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNP 258
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDR 360
L+RLIQEH +FL+LINEPV+G EG++ +Q MP +I VTP E+EAI RLEAMGFDR
Sbjct: 259 GLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQEAIGRLEAMGFDR 318
Query: 361 AIVLEVFFACNKNEELAANYLLDHMHEFED 390
A V+E F AC+++E+LAANYLL++ +FED
Sbjct: 319 ASVIEAFLACDRDEQLAANYLLENAGDFED 348
>gi|30699439|ref|NP_850982.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|73620991|sp|Q84L33.3|RD23A_ARATH RecName: Full=Putative DNA repair protein RAD23-1; AltName:
Full=RAD23-like protein 1; Short=AtRAD23-1
gi|21593616|gb|AAM65583.1| DNA repair protein RAD23, putative [Arabidopsis thaliana]
gi|110735096|gb|ABG89118.1| Rad23-3Aii [synthetic construct]
gi|332198160|gb|AEE36281.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 371
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 215/395 (54%), Positives = 278/395 (70%), Gaps = 30/395 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G + A + S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKS----GGSAGQASVQTSSVSQPVSATTSSTKP--AAPSTTQS 114
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+P P +P PA ++ + T YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 115 SPVPASPIPAQEQPAAQTDT-----YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 169
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 170 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 217
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+LQPMLQELGK
Sbjct: 218 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGK 276
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEA 355
QNPQL+RLIQE+QA+FL+L+NEP +G GEG++ DQ MP +I VTP E+EAI+RLEA
Sbjct: 277 QNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEA 336
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
MGFDRA+V+E F AC++NEELAANYLL++ +FED
Sbjct: 337 MGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
>gi|302756389|ref|XP_002961618.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
gi|300170277|gb|EFJ36878.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
Length = 367
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 234/395 (59%), Positives = 280/395 (70%), Gaps = 34/395 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG FD++V+P DTV VK +IE +QG + +P AQQ+LI+QGKVLKD+TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV+EN F+V+MLTK+K T AP SS TP++TP AP T
Sbjct: 61 ENKVSENGFLVVMLTKSK-------------TAAPTSSGATPSSTPQAAPATVT------ 101
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
S + + + T+ S VYG AASNLVAG LE IQQ++DMGGG+WDRD+ R
Sbjct: 102 ------TTPSPAPPAPAPTATSDVYGQAASNLVAGTGLEQTIQQLVDMGGGSWDRDSCAR 155
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ--PAPVTSSG 239
ALRAAYNNPERAVEYLYSGIP+ A+ PVARAP AA + PT PAP + G
Sbjct: 156 ALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPSAAPTGGVPAPAATGG 215
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
PNA PLDLFPQ + +G G G+LDFLRN+ QFQ LR MVQ NPQLLQPMLQELG+QN
Sbjct: 216 PNAVPLDLFPQ-VRTPPAGGGGNGALDFLRNNAQFQALRTMVQQNPQLLQPMLQELGRQN 274
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGE----GNLGDQLAGLMPQSIQVTPEEREAIERLEA 355
PQL+RLI E+ +FLRLI+E GGE G+L QLAG MPQSI VTPEEREAIERLEA
Sbjct: 275 PQLLRLINENHVEFLRLISEA--GGENPEAGDLLGQLAGAMPQSISVTPEEREAIERLEA 332
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
MGFDRA V+E F AC+KNE+LAANYLL+H ++ED
Sbjct: 333 MGFDRASVIEAFLACDKNEQLAANYLLEHSGDYED 367
>gi|357158336|ref|XP_003578095.1| PREDICTED: probable DNA repair protein RAD23-like isoform 2
[Brachypodium distachyon]
Length = 370
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 226/390 (57%), Positives = 274/390 (70%), Gaps = 25/390 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV P D V DVK IE+ QG +VYPA QQMLI+QG
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQGT--------- 51
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
NK + ++ K+K P+ + T P P S AP A PA A + + P
Sbjct: 52 -NKGSSSA----APAKSKEPSNQAPPTQTVPANPP-SQAPVVPAPPAAAAPAPIVPISAP 105
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP T +PASA V+ ++E+ YG AASNLVAG NLE IQ IL+MGGGTWDRDTV+R
Sbjct: 106 TPTATASPASA----VAVSTEAETYGQAASNLVAGGNLEATIQSILEMGGGTWDRDTVLR 161
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAA+NNPERAVEYLYSGIPE E+ + P Q Q TQPA V SSGPN
Sbjct: 162 ALRAAFNNPERAVEYLYSGIPEPMEIPAPPPS----AQPADPVQALQATQPA-VASSGPN 216
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
A+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+LQP+LQELGKQNPQ
Sbjct: 217 ASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANPQILQPLLQELGKQNPQ 276
Query: 302 LVRLIQEHQADFLRLINEPVQGGEG-NLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDR 360
+++LIQ++QA+FLRLINEP +G E NL DQ A +PQ+I VTPEE EAI RLE MGFDR
Sbjct: 277 ILQLIQDNQAEFLRLINEPAEGDEDENLLDQFAEGVPQTIAVTPEENEAILRLEGMGFDR 336
Query: 361 AIVLEVFFACNKNEELAANYLLDHMHEFED 390
A+VLEV+FACNK+E LAANYLLDHM+EF+D
Sbjct: 337 ALVLEVYFACNKDETLAANYLLDHMNEFDD 366
>gi|449459440|ref|XP_004147454.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 374
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 224/393 (56%), Positives = 280/393 (71%), Gaps = 23/393 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F +EV+P DTV VK IE VQG D YP +QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLT 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENK+ E+ F+V+ML+K+K P GS+ + T P ++ + + AP
Sbjct: 61 ENKITEDGFLVVMLSKSKAPGSTGSSSTQTTTIVPTTTPTPNSTSIPEAP---------- 110
Query: 122 TPAPTPAPASASVSSV-SATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
A A + ++S V +A ++ YG AASNLV+GNNLE IQ+I+DMGGG+WDR+TV
Sbjct: 111 --AQPAASRNVAISDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVT 168
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
RALRAAYNNPERAV+YLYSGIPE AEV PVAR P GQ ++ AP S G
Sbjct: 169 RALRAAYNNPERAVDYLYSGIPETAEVAAPVARPP-TGQPIDAGGAT------APPVSGG 221
Query: 240 PNANPLDLFPQ--GLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
PN++PL++FPQ G G GSL+FLRN+PQFQ LR+MVQANPQ+LQ MLQELGK
Sbjct: 222 PNSSPLNMFPQESLAAAAGGGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGK 281
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMG 357
QNPQL+RLIQ+HQA+FL+LINEP++G EG+L DQ MP +I VTP E++AIERLEAMG
Sbjct: 282 QNPQLLRLIQDHQAEFLQLINEPLEGFEGDLFDQPDQDMPHAINVTPAEQQAIERLEAMG 341
Query: 358 FDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
FDR V+E F AC++NEELAANYLL+H EFED
Sbjct: 342 FDRDQVIEAFLACDRNEELAANYLLEHGGEFED 374
>gi|30409718|dbj|BAC76389.1| RAD23-like protein [Arabidopsis thaliana]
Length = 371
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 213/395 (53%), Positives = 277/395 (70%), Gaps = 30/395 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G + A + S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKS----GGSAGQASVQTSSVSQPVSATTSSTKP--AAPSTTQS 114
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+P P +P PA ++ + T YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 115 SPVPASPIPAQEQPAAQTDT-----YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 169
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 170 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 217
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
GPN++PLDLFPQ +G+ G+L+FLRN+ Q + LR MV +NPQ+LQPMLQELGK
Sbjct: 218 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQLEQLRTMVHSNPQILQPMLQELGK 276
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEA 355
QNPQL+RLIQE+QA+FL+L+NEP +G GEG++ DQ MP +I VTP E+EAI+RLEA
Sbjct: 277 QNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEA 336
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
MGFDRA+V+E F AC++NEELAANYLL++ +FED
Sbjct: 337 MGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
>gi|22330746|ref|NP_565216.2| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|14334442|gb|AAK59419.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|17104777|gb|AAL34277.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|332198158|gb|AEE36279.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 365
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 214/395 (54%), Positives = 275/395 (69%), Gaps = 36/395 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQA----------SVQPVSATTSSTKP--AAPSTTQS 108
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+P P +P PA ++ + T YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 109 SPVPASPIPAQEQPAAQTDT-----YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 163
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 164 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 211
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+LQPMLQELGK
Sbjct: 212 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGK 270
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEA 355
QNPQL+RLIQE+QA+FL+L+NEP +G GEG++ DQ MP +I VTP E+EAI+RLEA
Sbjct: 271 QNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEA 330
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
MGFDRA+V+E F AC++NEELAANYLL++ +FED
Sbjct: 331 MGFDRALVIEAFLACDRNEELAANYLLENSGDFED 365
>gi|334184023|ref|NP_001185439.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198161|gb|AEE36282.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 395
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 217/414 (52%), Positives = 282/414 (68%), Gaps = 44/414 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G + A + S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKS----GGSAGQASVQTSSVSQPVSATTSSTKP--AAPSTTQS 114
Query: 122 TPAP-TPAPAS------ASVSSVS-------------ATSESGVYGHAASNLVAGNNLEG 161
+P P +P PA A V S + + +++ YG AAS LV+G++LE
Sbjct: 115 SPVPASPIPAQEQPAVYAFVFSFAGLAFCPLYGFPKVSMAQTDTYGQAASTLVSGSSLEQ 174
Query: 162 AIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQ 218
+QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G
Sbjct: 175 MVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGA 234
Query: 219 AANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLR 278
A P PA S GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR
Sbjct: 235 A---------PVAPA---SGGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLR 281
Query: 279 AMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLM 336
MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G GEG++ DQ M
Sbjct: 282 TMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEM 341
Query: 337 PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
P +I VTP E+EAI+RLEAMGFDRA+V+E F AC++NEELAANYLL++ +FED
Sbjct: 342 PHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 395
>gi|110735098|gb|ABG89119.1| Rad23-3Ai [synthetic construct]
Length = 365
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 214/395 (54%), Positives = 275/395 (69%), Gaps = 36/395 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQA----------SVQPVSATTSSTNP--AAPSTTQS 108
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+P P +P PA ++ + T YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 109 SPVPASPIPAQEQPAAQTDT-----YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 163
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 164 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 211
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+LQPMLQELGK
Sbjct: 212 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGK 270
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEA 355
QNPQL+RLIQE+QA+FL+L+NEP +G GEG++ DQ MP +I VTP E+EAI+RLEA
Sbjct: 271 QNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEA 330
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
MGFDRA+V+E F AC++NEELAANYLL++ +FED
Sbjct: 331 MGFDRALVIEAFLACDRNEELAANYLLENSGDFED 365
>gi|449439755|ref|XP_004137651.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 358
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 214/392 (54%), Positives = 267/392 (68%), Gaps = 37/392 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+ DTV VK IE VQG D YP QQ+LI+ GKVLKD++TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV+E F+V+ML+K+K G + ST P + P + P ++TPA
Sbjct: 61 ENKVSEEGFLVVMLSKSKTSVSAGQS-STQPAQNPPVAQPVLSSTPA------------- 106
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ V+ + ++ YG AASNLVAGNNLE +QQ++DMGGG WDR+TVVR
Sbjct: 107 -------------AQVTPSVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETVVR 153
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAAYNNPERAV+YLYSGIPE AEV PV R G+GQA + +P P S P
Sbjct: 154 ALRAAYNNPERAVDYLYSGIPESAEVAVPVGRF-GSGQATETDASVPAPV------SGAP 206
Query: 241 NANPLDLFPQ--GLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
N PL++FPQ G G GSL+FLRN+PQFQ LR MV NPQ+LQPMLQELGKQ
Sbjct: 207 NTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQ 266
Query: 299 NPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGF 358
NPQL+RLIQ+H A+FL+LINEPV EG + +Q MP +I VTP E+ AIERLEAMGF
Sbjct: 267 NPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGF 326
Query: 359 DRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
DRA+V+E F AC++NEELAANYLL++ +F+D
Sbjct: 327 DRALVIEAFLACDRNEELAANYLLENSGDFDD 358
>gi|30409720|dbj|BAC76390.1| RAD23-like protein [Arabidopsis thaliana]
Length = 365
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/395 (53%), Positives = 274/395 (69%), Gaps = 36/395 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQA----------SVQPVSATTSSTKP--AAPSTTQS 108
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+P P +P PA ++ + T YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 109 SPVPASPIPAQEQPAAQTDT-----YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 163
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 164 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 211
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
GPN++PLDLFPQ +G+ G+L+FLRN+ Q + LR MV +NPQ+LQPMLQELGK
Sbjct: 212 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQLEQLRTMVHSNPQILQPMLQELGK 270
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEA 355
QNPQL+RLIQE+QA+FL+L+NEP +G GEG++ DQ MP +I VTP E+EAI+RLEA
Sbjct: 271 QNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEA 330
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
MGFDRA+V+E F AC++NEELAANYLL++ +FED
Sbjct: 331 MGFDRALVIEAFLACDRNEELAANYLLENSGDFED 365
>gi|297842761|ref|XP_002889262.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
gi|297335103|gb|EFH65521.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
Length = 365
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 209/394 (53%), Positives = 273/394 (69%), Gaps = 34/394 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG + YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKNNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K TA + S P A T +T P+T P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSK----------TAGSAGQSSVQPASATTSSTKPET--PSTTQS 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P AS + +++ YG AAS LV+G++LE +QQI++MGGG+WD++TV R
Sbjct: 109 IAVP----ASPITAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTR 164
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
ALRAAYNNPERAV+YLYSGIPE AEV P A+ G+G A P PA S
Sbjct: 165 ALRAAYNNPERAVDYLYSGIPETAEVAVAVPGAQMAGSGAA---------PVAPA---SG 212
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+LQPMLQELGKQ
Sbjct: 213 GPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQ 271
Query: 299 NPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM 356
NPQL+RLIQE+QA+FL+L+NEP +G G+ ++ DQ MP +I VTP E+EAI+RLEAM
Sbjct: 272 NPQLLRLIQENQAEFLQLVNEPYEGSDGDADMLDQPEQEMPHAINVTPAEQEAIQRLEAM 331
Query: 357 GFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
GFD+A+V+E F AC++NEELAANYLL++ +FED
Sbjct: 332 GFDKALVIEAFLACDRNEELAANYLLENSGDFED 365
>gi|356550681|ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 367
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/390 (53%), Positives = 265/390 (67%), Gaps = 26/390 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DT+ VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+NKV+E+ F+V+ML+K K G ST P ++ TP +TP PQ+A
Sbjct: 61 DNKVSEDGFLVVMLSKGKT-LGSAGISSTQFASNPPTTVSTPNSTPLVQPQSA------- 112
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+++ + + YG AASNLVAG+NLE IQQ++DMGGG+WDRDTV
Sbjct: 113 ------NNNASATDVTTTNVTTNTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTC 166
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS--SG 239
ALRAAYNNPERAV+YLYSGIP AE+ P AA+ P T A V +
Sbjct: 167 ALRAAYNNPERAVDYLYSGIPVAAEI----AVP----AASYPISQTTETGGASVGAVPGV 218
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
PN++PL++FPQ + A GSLDFLRN+PQFQ LR+MVQ+NPQ+LQP+LQELGKQN
Sbjct: 219 PNSSPLNMFPQ--ETISGAGAEIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQN 276
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
P L+ LIQEH A+FL+LINEPV+G EG++ DQ MP +I VTP E+EAI RLEAMGFD
Sbjct: 277 PSLLTLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFD 336
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFE 389
RA V+E F AC+ +E+LAANYLL++ +FE
Sbjct: 337 RASVIEAFLACDHDEQLAANYLLENAGDFE 366
>gi|224073098|ref|XP_002303970.1| predicted protein [Populus trichocarpa]
gi|222841402|gb|EEE78949.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/391 (55%), Positives = 272/391 (69%), Gaps = 35/391 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F+++V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+NKV E+ F+V+ML+K+K TG T ST P P ++ PT +TPA Q
Sbjct: 61 DNKVTEDGFLVVMLSKSK--TGTAGTSSTQPVSTPPTTTPTSISTPAPDAQ--------- 109
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A ++S YG AASNLVAG+NLE +QQI+DMGGGTWD++TV R
Sbjct: 110 -----------------AFAQSDTYGQAASNLVAGSNLEQTLQQIMDMGGGTWDKETVTR 152
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAAYNNPERAV+YLYSGIPE AEV PVAR P A+ T+ P
Sbjct: 153 ALRAAYNNPERAVDYLYSGIPETAEVAVPVARFP-----ADQATETGAAPAAPAPAFGAP 207
Query: 241 NANPLDLFPQGLPDVGSGAAGAG-SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
N++PL++FP+ + G GA G SLDFLRN+ QFQ LR+MVQANPQ+LQPMLQELGKQN
Sbjct: 208 NSSPLNMFPETISGGGGGAGGGLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQN 267
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
PQL+R+IQEH A+FL+LINEP+ G EG++ DQ MP +I VTP E+EAIERLEAMGFD
Sbjct: 268 PQLLRIIQEHHAEFLQLINEPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLEAMGFD 327
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFED 390
RA+V+E F AC++NE+LAANYLL++ +FED
Sbjct: 328 RALVIEAFLACDRNEQLAANYLLENAGDFED 358
>gi|118486403|gb|ABK95041.1| unknown [Populus trichocarpa]
Length = 375
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 218/392 (55%), Positives = 279/392 (71%), Gaps = 20/392 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F+++V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+NKV E+ F+V+ML+K+K T T ST P P ++ PT +TP A
Sbjct: 61 DNKVTEDGFLVVMLSKSK--TAAAGTSSTQPVSTPPTTTPTSNSTPDAPAPDA------- 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ ++++ + +A ++S YG AASNLVAG++LE IQQI+D+GGG WD++TV R
Sbjct: 112 --QAPASKSASASDTATANAQSDTYGQAASNLVAGSSLEQTIQQIMDVGGGNWDKETVTR 169
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAAYNNPERAV+YLYSGIPE AEV PVAR P A+ + + GP
Sbjct: 170 ALRAAYNNPERAVDYLYSGIPETAEVAVPVARFP-----ADQGIETGAAPAAPALAPGGP 224
Query: 241 NANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
N++PL++FP+ L G G AG GSLDFLRN+ QFQ LR+MVQANPQ+LQPMLQELGKQ
Sbjct: 225 NSSPLNMFPETLSG-GGGDAGLVLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQ 283
Query: 299 NPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGF 358
NPQL+R+IQEH A+FL+LINEP+ G EG++ DQ MP +I VTP E+EAIERL AMGF
Sbjct: 284 NPQLLRMIQEHNAEFLQLINEPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLVAMGF 343
Query: 359 DRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
DRA+V+E F AC++NEELAANYLL++ +FED
Sbjct: 344 DRALVIEAFLACDRNEELAANYLLENGADFED 375
>gi|356550683|ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 353
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 205/390 (52%), Positives = 259/390 (66%), Gaps = 40/390 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DT+ VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+NKV+E+ F+V+ML+K K G + + A P ++ TP +TP P
Sbjct: 61 DNKVSEDGFLVVMLSKGKTLGSAGISSTQACCFNPPTTVSTPNSTPLVQPHVT------- 113
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ YG AASNLVAG+NLE IQQ++DMGGG+WDRDTV
Sbjct: 114 ---------------------TNTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTC 152
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS--SG 239
ALRAAYNNPERAV+YLYSGIP AE+ P AA+ P T A V +
Sbjct: 153 ALRAAYNNPERAVDYLYSGIPVAAEI----AVP----AASYPISQTTETGGASVGAVPGV 204
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
PN++PL++FPQ + A GSLDFLRN+PQFQ LR+MVQ+NPQ+LQP+LQELGKQN
Sbjct: 205 PNSSPLNMFPQ--ETISGAGAEIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQN 262
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
P L+ LIQEH A+FL+LINEPV+G EG++ DQ MP +I VTP E+EAI RLEAMGFD
Sbjct: 263 PSLLTLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFD 322
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFE 389
RA V+E F AC+ +E+LAANYLL++ +FE
Sbjct: 323 RASVIEAFLACDHDEQLAANYLLENAGDFE 352
>gi|358346471|ref|XP_003637291.1| RAD23 protein [Medicago truncatula]
gi|355503226|gb|AES84429.1| RAD23 protein [Medicago truncatula]
Length = 366
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 212/394 (53%), Positives = 273/394 (69%), Gaps = 33/394 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P D++ VK IE +QG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+NKV+E+ F+V+ML+K+K G T ST P + PTP +T Q+A ++
Sbjct: 61 DNKVSEDGFLVVMLSKSKV-LGSAGTSSTQTASNPPITVPTPDSTSVVQTQSANNNASPA 119
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
APT + T+++ YG AASNLVAG+NLE IQQ++DMGGG+WDRDTV R
Sbjct: 120 VLAPT-----------NVTTDT--YGQAASNLVAGSNLEQTIQQLIDMGGGSWDRDTVNR 166
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVA-RAPGNGQAANSPTQMPQPTQPAPVTSSG- 239
ALRAA+NNPERAV+YLYSGIPE AEV A + P N PT+ VT+
Sbjct: 167 ALRAAFNNPERAVDYLYSGIPEAAEVAVPAAQYPSN------------PTETGGVTTGVV 214
Query: 240 ---PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
PN++PL++FPQ + AGAGSLDFLRN+PQFQ LR MVQ+NPQ+LQP+LQELG
Sbjct: 215 PGVPNSSPLNMFPQ--ETISGAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELG 272
Query: 297 KQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM 356
KQNP L+RLI EH ++FL+LINEP+ G EG+ DQ MP ++ VTP E+EAI RLEAM
Sbjct: 273 KQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAM 332
Query: 357 GFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
GFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 333 GFDRASVIEAFLACDRDEQLAANYLLENAGDFED 366
>gi|297844544|ref|XP_002890153.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
gi|297335995|gb|EFH66412.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 210/392 (53%), Positives = 269/392 (68%), Gaps = 31/392 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DT+ VK IE Q D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K P+ G + + + +PTP A AP AVP S
Sbjct: 61 ENKVTEEGFLVVMLSKSKTPSSAGPSSIQPTSTTTSTISPTPLA----APSIAVPASNS- 115
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP PA +S YG AAS LV+G+++E +QQI++MGGG+WD++TV R
Sbjct: 116 TPVQEQLPA-----------QSDTYGQAASTLVSGSSVEQMVQQIMEMGGGSWDKETVTR 164
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAV+YLYSGIPE + P G G A AP S GPN
Sbjct: 165 ALRAAYNNPERAVDYLYSGIPETVAI-PATNLSGVGSGAEL---------TAPPASGGPN 214
Query: 242 ANPLDLFPQ-GLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
++PLDLFPQ + D G G G+L+FLR + QFQ LR+MV +NPQ+LQPMLQELGKQNP
Sbjct: 215 SSPLDLFPQEAVSDAGGG--DLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNP 272
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLG--DQLAGLMPQSIQVTPEEREAIERLEAMGF 358
QL+RLIQE+QA+FL+L+NEP +G +G++ DQ MP ++ VTPEE+EAI+RLEAMGF
Sbjct: 273 QLLRLIQENQAEFLQLLNEPYEGSDGDMDIFDQPEQEMPHAVNVTPEEQEAIQRLEAMGF 332
Query: 359 DRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
DRA+V+E F AC++NEELAANYLL+H +FED
Sbjct: 333 DRALVIEAFLACDRNEELAANYLLEHSADFED 364
>gi|15221013|ref|NP_173070.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
gi|73620992|sp|Q84L32.2|RD23B_ARATH RecName: Full=Putative DNA repair protein RAD23-2; AltName:
Full=RAD23-like protein 2; Short=AtRAD23-2
gi|110735100|gb|ABG89120.1| Rad23-3B [synthetic construct]
gi|332191297|gb|AEE29418.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
Length = 368
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 207/393 (52%), Positives = 268/393 (68%), Gaps = 29/393 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE Q D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K + G + + + + + T A P+T AVP S
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNST 120
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P T++S YG AAS LV+G+++E +QQI++MGGG+WD++TV R
Sbjct: 121 PVQEQP------------TAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTR 168
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAV+YLYSGIPE + P G G + T P P S GPN
Sbjct: 169 ALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGR-------ELTAPPP--SGGPN 218
Query: 242 ANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
++PLDLFPQ + S AAG G+L+FLR + QFQ LR+MV +NPQ+LQPMLQELGKQN
Sbjct: 219 SSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQN 275
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLG--DQLAGLMPQSIQVTPEEREAIERLEAMG 357
PQL+RLIQE+QA+FL+L+NEP +G +G++ DQ MP S+ VTPEE+E+IERLEAMG
Sbjct: 276 PQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMG 335
Query: 358 FDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
FDRAIV+E F +C++NEELAANYLL+H +FED
Sbjct: 336 FDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368
>gi|145334669|ref|NP_001078680.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|332006939|gb|AED94322.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 332
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 212/326 (65%), Positives = 250/326 (76%), Gaps = 15/326 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATP-ATAPQTAVPIST 119
EN V ENSF+VIML+K K P+G STA AP ++ P ATP +AP +VP+
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGA----STASAPAPSATQPQTVATPQVSAPTASVPV-- 113
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PT A+A+ + +A+ ++ VYG AASNLVAG LE +QQILDMGGG+WDRDTV
Sbjct: 114 -----PTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTV 168
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
VRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A +P PQ + G
Sbjct: 169 VRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGG 228
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
PNANPL+LFPQG+P AGAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQN
Sbjct: 229 PNANPLNLFPQGMPAA-DAGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQN 287
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGE 325
PQLVRLIQEHQADFLRLINEPV+G E
Sbjct: 288 PQLVRLIQEHQADFLRLINEPVEGEE 313
>gi|168020994|ref|XP_001763027.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685839|gb|EDQ72232.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 370
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 227/390 (58%), Positives = 274/390 (70%), Gaps = 22/390 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG FD+EV P DTV +VK +IE QG + +P +QQ+LI+QGKVLKD+TT+E
Sbjct: 1 MKISVKTLKGNHFDLEVSPADTVLNVKRQIEDSQGKESFPCSQQLLIHQGKVLKDETTME 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV+EN FVV+MLTK K TG G A P+++ T V +T P
Sbjct: 61 ENKVSENGFVVVMLTKAK--TGAG--------------ASPPSSSGTTQAPAPVAAATPP 104
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PA +PA S + A + + YG AASNLVAGN LE +QQI+DMGGG+WDRDTVVR
Sbjct: 105 APARSPATPSPPTPATPAPAPASTYGQAASNLVAGNVLETTVQQIMDMGGGSWDRDTVVR 164
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAA+NNPERAVEYLYSGIPE AE++PV G A + GPN
Sbjct: 165 ALRAAFNNPERAVEYLYSGIPESAEMRPVG---GRSPAVAGVPAATPAAPAQAAPAGGPN 221
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
A PLDLFPQ +G GAG+LDFLRN+PQ LR MVQANPQ+LQPMLQELGKQNP
Sbjct: 222 AAPLDLFPQ-GMPGMAGGGGAGALDFLRNNPQAS-LRTMVQANPQILQPMLQELGKQNPA 279
Query: 302 LVRLIQEHQADFLRLINEP-VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDR 360
L+RLI ++QA+FLRLINE +G EG++ QLAG MPQSI VTPEEREAI+RLE MGF+R
Sbjct: 280 LLRLINDNQAEFLRLINEAGAEGAEGDILGQLAGAMPQSINVTPEEREAIDRLEGMGFER 339
Query: 361 AIVLEVFFACNKNEELAANYLLDHMHEFED 390
+V+E F AC+KNE+LAANYLL+H ++ED
Sbjct: 340 TLVIEAFLACDKNEQLAANYLLEHAGDYED 369
>gi|302762537|ref|XP_002964690.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
gi|300166923|gb|EFJ33528.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
Length = 385
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 228/399 (57%), Positives = 282/399 (70%), Gaps = 24/399 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG FD++V+P DTV VK +IE +QG + +P AQQ+LI+QGKVLKD+TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV+EN F+V+MLTK +RS+ + SS+ + ++ ++ + +
Sbjct: 61 ENKVSENGFLVVMLTK---------SRSSGIARCSSSSSSSSSSPSTSSSSGSGCYAVSK 111
Query: 122 TPAPTPAPASASVSSV----SATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
S S+ + +ATS+ VYG AASNLVAG LE IQQ++DMGGG+WDRD
Sbjct: 112 FSLLHLFWCSLSLVFLRRPPAATSD--VYGQAASNLVAGTGLEQTIQQLVDMGGGSWDRD 169
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ--PAPV 235
+ VRALRAAYNNPERAVEYLYSGIP+ A+ PVARAP AA + PT PAP
Sbjct: 170 SCVRALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPTAAPTGGVPAPA 229
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQEL 295
+ GPNA PLDLFPQ + +G G G+LDFLRN+ QFQ LR MVQ NPQLLQPMLQEL
Sbjct: 230 ATGGPNAVPLDLFPQ-VRTPPAGGGGNGALDFLRNNAQFQALRTMVQQNPQLLQPMLQEL 288
Query: 296 GKQNPQLVRLIQEHQADFLRLINEPVQGGE----GNLGDQLAGLMPQSIQVTPEEREAIE 351
G+QNPQL+RLI E+ +FLRLI+E GGE G+L QLAG MPQSI VTPEEREAIE
Sbjct: 289 GRQNPQLLRLINENHVEFLRLISEA--GGENPEAGDLLGQLAGAMPQSISVTPEEREAIE 346
Query: 352 RLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
RLEAMGFDRA V+E F AC+KNE+LAANYLL+H ++ED
Sbjct: 347 RLEAMGFDRASVIEAFLACDKNEQLAANYLLEHSGDYED 385
>gi|168057528|ref|XP_001780766.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667784|gb|EDQ54405.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 396
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 229/395 (57%), Positives = 276/395 (69%), Gaps = 11/395 (2%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG FD+ V ++ V VK KIE +QG D +P AQQ+LI+QGKVLKD+TT+
Sbjct: 1 MKISVKTLKGNHFDLHVAEDELVSSVKRKIEELQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 62 ENKVAENSFVVIMLTK---NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
+NKVAEN F+V+MLTK ++ TG R+ A + AP PA + P A P
Sbjct: 61 DNKVAENGFLVVMLTKVRLHESNTGTSRWRTRVVAPAAPAPAPAPAPASTSTPAPAAPAP 120
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
A TP + +V+ T + YG AASNLVAG+ LE +QQI+DMGGGTWDRDT
Sbjct: 121 APAAVAATPGAGAPAVALCRGTGDG--YGQAASNLVAGSALESTVQQIMDMGGGTWDRDT 178
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEV-QPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V+RALRAA+NNPERAVEYLYSGIPE AEV PVAR P G A + A +
Sbjct: 179 VLRALRAAFNNPERAVEYLYSGIPEAAEVPAPVARGPPAGGAPVAAAPAGPGAAGAAAVA 238
Query: 238 S---GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
+ GPNA PLDLFPQG+P G G AG G+LDFLRN+PQFQ LR MVQANPQ+LQPMLQE
Sbjct: 239 ANPQGPNAAPLDLFPQGMPGAGGGGAGLGALDFLRNNPQFQALRTMVQANPQILQPMLQE 298
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG--DQLAGLMPQSIQVTPEEREAIER 352
LGKQNP L+RLI E+QA+FLRLINE G +LAG PQS+ VTPEERE+IER
Sbjct: 299 LGKQNPALLRLINENQAEFLRLINEAGAEGAEGGDAVGRLAGGYPQSVNVTPEERESIER 358
Query: 353 LEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
LEAMGF+RA+V+E F AC+KNE+LAANYLL+H ++
Sbjct: 359 LEAMGFNRALVIEAFLACDKNEQLAANYLLEHAND 393
>gi|298204749|emb|CBI25247.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 222/408 (54%), Positives = 275/408 (67%), Gaps = 28/408 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKR--PTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
ENKV E+ F+V+ML+K+K TG S +S + P PA P AP +
Sbjct: 61 ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP 120
Query: 120 EPTPAPTP---------------APASASVSSVSATSE-SGVYGHAASNLVAGNNLEGAI 163
P P P AP S S S V+ S + YG AASN+V+ N+LE I
Sbjct: 121 APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI 180
Query: 164 QQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANS 222
QQI+D+GGGTWD++TV RALRAAYNNPERAV+YLYSGIPE AEV PVA P +
Sbjct: 181 QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPAD------ 234
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
Q PA S PN++PL++FPQ G+ G GSL+FLRN+ QFQ LRAMVQ
Sbjct: 235 --QETGGAAPAAPASGVPNSSPLNMFPQE-TLSGAAGGGLGSLEFLRNNHQFQALRAMVQ 291
Query: 283 ANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQV 342
ANPQ+LQPMLQELGKQNP L+RLIQEH A+FL+LINEP++G EG++ DQ +P +I V
Sbjct: 292 ANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEGSEGDIFDQPEQELPHAINV 351
Query: 343 TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
TP E+EAIERLEAMGFDRA+V+E F AC++NEELA NYLL++ ++ED
Sbjct: 352 TPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAVNYLLENAGDYED 399
>gi|30409722|dbj|BAC76391.1| RAD23-like protein [Arabidopsis thaliana]
Length = 366
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/393 (52%), Positives = 267/393 (67%), Gaps = 31/393 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P T+ VK IE Q D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLP--TIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K + G + + + + + T A P+T AVP S
Sbjct: 59 ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNST 118
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P T++S YG AAS LV+G+++E +QQI++MGGG+WD++TV R
Sbjct: 119 PVQEQP------------TAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTR 166
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAV+YLYSGIPE + P G G + T P P S GPN
Sbjct: 167 ALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGR-------ELTAPPP--SGGPN 216
Query: 242 ANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
++PLDLFPQ + S AAG G+L+FLR + QFQ LR+MV +NPQ+LQPMLQELGKQN
Sbjct: 217 SSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQN 273
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLG--DQLAGLMPQSIQVTPEEREAIERLEAMG 357
PQL+RLIQE+QA+FL+L+NEP +G +G++ DQ MP S+ VTPEE+E+IERLEAMG
Sbjct: 274 PQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMG 333
Query: 358 FDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
FDRAIV+E F +C++NEELAANYLL+H +FED
Sbjct: 334 FDRAIVIEAFLSCDRNEELAANYLLEHSADFED 366
>gi|359483130|ref|XP_002270323.2| PREDICTED: putative DNA repair protein RAD23-1-like [Vitis
vinifera]
Length = 400
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 220/408 (53%), Positives = 275/408 (67%), Gaps = 27/408 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKR--PTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
ENKV E+ F+V+ML+K+K TG S +S + P PA P AP +
Sbjct: 61 ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP 120
Query: 120 EPTPAPTP---------------APASASVSSVSATSE-SGVYGHAASNLVAGNNLEGAI 163
P P P AP S S S V+ S + YG AASN+V+ N+LE I
Sbjct: 121 APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI 180
Query: 164 QQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANS 222
QQI+D+GGGTWD++TV RALRAAYNNPERAV+YLYSGIPE AEV PVA P + + +
Sbjct: 181 QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPADQETGSG 240
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
A S PN++PL++FPQ G+ G GSL+FLRN+ QFQ LRAMVQ
Sbjct: 241 AAP-------AAPASGVPNSSPLNMFPQE-TLSGAAGGGLGSLEFLRNNHQFQALRAMVQ 292
Query: 283 ANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQV 342
ANPQ+LQPMLQELGKQNP L+RLIQEH A+FL+LINEP++G EG++ DQ +P +I V
Sbjct: 293 ANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEGSEGDIFDQPEQELPHAINV 352
Query: 343 TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
TP E+EAIERLEAMGFDRA+V+E F AC++NEELA NYLL++ ++ED
Sbjct: 353 TPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAVNYLLENAGDYED 400
>gi|255543415|ref|XP_002512770.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223547781|gb|EEF49273.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 359
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 215/392 (54%), Positives = 270/392 (68%), Gaps = 36/392 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPNDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+NKV E+ F+V+ML+K+K G++ + P ++AP+ +TPA
Sbjct: 61 DNKVTEDGFLVVMLSKSKTSGSSGTSSTQPAAATPPTTAPSSNSTPAV------------ 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
V +++ YG AASNLVAG+NLE IQQI+DMGGGTWD++TV R
Sbjct: 109 --------------EVQPPTQTDTYGEAASNLVAGDNLEQTIQQIMDMGGGTWDKETVTR 154
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAAYNNPERAV+YLYSGIPE AEV PVA P GQA + PA S P
Sbjct: 155 ALRAAYNNPERAVDYLYSGIPETAEVAVPVAHLPA-GQATETGAA------PAAPLSGVP 207
Query: 241 NANPLDLFPQ--GLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
N++PL++FPQ G A G GSLDFLRN+ QFQ LR+MVQANPQ+LQPMLQELGKQ
Sbjct: 208 NSSPLNMFPQEALSAAGGGSAGGLGSLDFLRNNAQFQTLRSMVQANPQILQPMLQELGKQ 267
Query: 299 NPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGF 358
NPQL+R+IQEH A+FL+L+NEP++G EG++ DQ MP +I VTP E+ AIERL AMGF
Sbjct: 268 NPQLLRMIQEHHAEFLQLLNEPLEGSEGDIFDQGEQDMPHAINVTPAEQAAIERLVAMGF 327
Query: 359 DRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
DRA+V+E F AC++NE LAANYLL++ +FED
Sbjct: 328 DRALVIEAFLACDRNEVLAANYLLENGGDFED 359
>gi|413954952|gb|AFW87601.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 399
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 219/368 (59%), Positives = 269/368 (73%), Gaps = 15/368 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT+F++E P+ +V DVK IET QG Y A QQMLIYQGK+LKD+TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT--AVPIST 119
N VAENSF+VIML+K K + ST +TA A + P A A+ +T P++T
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPVAT 120
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
T P+ P +A ++V+AT ++ VY AASNLV+GNNLE IQQILDMGGGTW+RDTV
Sbjct: 121 AETAPPSVQPQAAPAATVAATDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERDTV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAAN----SPTQ--MPQPTQPA 233
VRALRAAYNNPERA++YLYSGIPE E QPVARAP GQ N SP Q + P QP+
Sbjct: 181 VRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASPAQPAVALPVQPS 240
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSG-----AAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
P S+GPNANPL+LFPQG+P GS AG+G+LD LR PQFQ L +VQANPQ+L
Sbjct: 241 PA-SAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQFQALLQLVQANPQIL 299
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGE-GNLGDQLAGLMPQSIQVTPEER 347
QPMLQELGKQNPQ++RLIQE+QA+FLRL+NE +GG GN+ QLA +PQ++ VTPEER
Sbjct: 300 QPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAVPQTLTVTPEER 359
Query: 348 EAIERLEA 355
EAI+R ++
Sbjct: 360 EAIQRCKS 367
>gi|115444607|ref|NP_001046083.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|50252077|dbj|BAD28007.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113535614|dbj|BAF07997.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|222622305|gb|EEE56437.1| hypothetical protein OsJ_05616 [Oryza sativa Japonica Group]
Length = 369
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 213/384 (55%), Positives = 262/384 (68%), Gaps = 21/384 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+P DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV+E F+V+ML+K+K G+ S + P + TPA APQ V + P
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSLT-SSTPLTRQETPADASRAAPQPLVAPTRTP 119
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P PA A S YG AASNL++G+NL+ I Q+++MGGG+WDRD V R
Sbjct: 120 QPERPPAEAP-----------SNAYGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQR 168
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAVEYLYSGIP AEV P GQ AN T P T+ A + S PN
Sbjct: 169 ALRAAYNNPERAVEYLYSGIPITAEVA----VPAGGQGAN--TTEPSSTREASL-SGIPN 221
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
A+PL+LFPQG G AG G+L+FLR++ QFQ LR MV NPQ+LQPMLQEL K+NPQ
Sbjct: 222 ASPLNLFPQGD-ANDGGGAGGGTLEFLRHNQQFQALREMVHTNPQILQPMLQELSKKNPQ 280
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGNLGDQ-LAGLMPQSIQVTPEEREAIERLEAMGFDR 360
L+RLIQE+ +FL+LINEP G +G+ DQ MP SI VTPEE+EAI RLE MGFDR
Sbjct: 281 LLRLIQENHDEFLQLINEPFDGADGDFLDQPDQDEMPHSINVTPEEQEAIGRLEGMGFDR 340
Query: 361 AIVLEVFFACNKNEELAANYLLDH 384
A V+E FFAC++NE+LAANYLL+H
Sbjct: 341 ARVIEAFFACDRNEQLAANYLLEH 364
>gi|218190185|gb|EEC72612.1| hypothetical protein OsI_06092 [Oryza sativa Indica Group]
Length = 369
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 212/384 (55%), Positives = 261/384 (67%), Gaps = 21/384 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+P DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV+E F+V+ML+K+K G+ S + P + TPA APQ V + P
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSLT-SSTPLTRQETPADASRAAPQPLVAPTRTP 119
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P PA A S YG AASNL++G+NL+ I Q+++MGGG+WDRD V R
Sbjct: 120 QPERPPAEAP-----------SNAYGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQR 168
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAVEYLYSGIP AEV P GQ AN T P T+ A + S PN
Sbjct: 169 ALRAAYNNPERAVEYLYSGIPITAEVA----VPAGGQGAN--TTEPSSTREASL-SGIPN 221
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
A+PL+LFPQG AG G+L+FLR++ QFQ LR MV NPQ+LQPMLQEL K+NPQ
Sbjct: 222 ASPLNLFPQGD-ANDGDGAGGGTLEFLRHNQQFQALREMVHTNPQILQPMLQELSKKNPQ 280
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGNLGDQ-LAGLMPQSIQVTPEEREAIERLEAMGFDR 360
L+RLIQE+ +FL+LINEP G +G+ DQ MP SI VTPEE+EAI RLE MGFDR
Sbjct: 281 LLRLIQENHDEFLQLINEPFDGADGDFLDQPDQDEMPHSINVTPEEQEAIGRLEGMGFDR 340
Query: 361 AIVLEVFFACNKNEELAANYLLDH 384
A V+E FFAC++NE+LAANYLL+H
Sbjct: 341 ARVIEAFFACDRNEQLAANYLLEH 364
>gi|449515726|ref|XP_004164899.1| PREDICTED: putative DNA repair protein RAD23-1-like, partial
[Cucumis sativus]
Length = 386
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 210/371 (56%), Positives = 262/371 (70%), Gaps = 23/371 (6%)
Query: 24 VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTG 83
V VK IE VQG D YP +QQ+LI+ GKVLKD+TTL ENK+ E+ F+V+ML+K+K P
Sbjct: 35 VLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSKAPGS 94
Query: 84 EGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSV-SATSE 142
GS+ + T P ++ + + AP A A + ++S V +A ++
Sbjct: 95 TGSSSTQTTTIVPTTTPTPNSTSIPEAP------------AQPAASRNVAISDVPTANAQ 142
Query: 143 SGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
YG AASNLV+GNNLE IQ+I+DMGGG+WDR+TV RALRAAYNNPERAV+YLYSGIP
Sbjct: 143 IDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIP 202
Query: 203 EQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQ--GLPDVGSGA 259
E AEV PVAR P GQ ++ AP S GPN++PL++FPQ G G
Sbjct: 203 ETAEVAAPVARPP-TGQPIDAGGAT------APPVSGGPNSSPLNMFPQESLAAAAGGGG 255
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE 319
GSL+FLRN+PQFQ LR+MVQANPQ+LQ MLQELGKQNPQL+RLIQ+HQA+FL+LINE
Sbjct: 256 GSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINE 315
Query: 320 PVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
P++G EG+L DQ MP +I VTP E++AIERLEAMGFDR V+E F AC++NEELAAN
Sbjct: 316 PLEGFEGDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVIEAFLACDRNEELAAN 375
Query: 380 YLLDHMHEFED 390
YLL+H EFED
Sbjct: 376 YLLEHGGEFED 386
>gi|388511083|gb|AFK43607.1| unknown [Lotus japonicus]
Length = 228
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 183/229 (79%), Positives = 199/229 (86%), Gaps = 4/229 (1%)
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
IQQILDMGGG+WDRDTVVRALRAA+NNPERAV+YLYSGIPEQAE PV + P + Q N
Sbjct: 2 IQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPEQAEAPPVTQMPASAQPGNP 61
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
P PQ A V SSGPNANPLDLFPQGLP+VGSG AGAGSLDFLRNS QFQ LRAMVQ
Sbjct: 62 PAAAPQL---ANVPSSGPNANPLDLFPQGLPNVGSGPAGAGSLDFLRNSQQFQALRAMVQ 118
Query: 283 ANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAG-LMPQSIQ 341
ANPQ+LQPMLQELGKQNP L+RLIQ+HQ DFLRLINEPV+GGEGN+ Q AG MPQ++
Sbjct: 119 ANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVEGGEGNILGQPAGAAMPQAVS 178
Query: 342 VTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
VTPEEREAIERLEAMGFDRA VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 179 VTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 227
>gi|356521680|ref|XP_003529481.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 343
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 208/393 (52%), Positives = 259/393 (65%), Gaps = 54/393 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP--QT-AVPIS 118
ENKV+E+ F+V+ML+K+K +G + S P P ++ +TP + P QT A S
Sbjct: 61 ENKVSEDGFLVVMLSKSKT-SGSAAASSVQPASNPATTVSMSNSTPPSDPPVQTQAANNS 119
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T T APT ++VSA + YG AASNLVAG+NLE IQQI+DMGGG WDRDT
Sbjct: 120 TSSTDAPT--------TNVSADT----YGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDT 167
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V RALRAAYNNPERA++YLYSGIPE AEV PV + G A PV
Sbjct: 168 VSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGA------------VPV-- 213
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
GPN++PL++FPQ + S AG GSLDFLRN+PQ ELGK
Sbjct: 214 -GPNSSPLNMFPQ--ETISSTGAGLGSLDFLRNNPQ--------------------ELGK 250
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMG 357
QNP L+RLIQEH +FL+LINEPV+G EG++ +Q MP +I VTP E+EAI RLEAMG
Sbjct: 251 QNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQEAIGRLEAMG 310
Query: 358 FDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
FDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 311 FDRASVIEAFLACDRDEQLAANYLLENAGDFED 343
>gi|1914685|emb|CAA72742.1| RAD23 protein, isoform II [Daucus carota]
Length = 379
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 203/393 (51%), Positives = 259/393 (65%), Gaps = 18/393 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ +P DTV +K IE +QG D YP QQ+LI+ GKVLKD++TL
Sbjct: 1 MKLTVKTLKGSHFEIRAQPNDTVMAIKKNIEDLQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGS---TRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
E+K++E+ F+V+ML K+K + G+ S+AP P + A A +P +
Sbjct: 61 ESKISEDGFLVVMLGKSKTMSSTGTPAAQSSSAPAPTPAPAVAPAPAPAAAPASAVIPNT 120
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P +PA A S YG AASN+VAG+NLE IQ I+DMGGG WD +
Sbjct: 121 TVPEAPLSPAFAP-----------SDTYGEAASNVVAGSNLEQTIQHIMDMGGGMWDTNM 169
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQ-PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V RALRAAYNNPERAV+YLYSGIPE AE PV+ G+ N+ A
Sbjct: 170 VSRALRAAYNNPERAVDYLYSGIPEMAEAAVPVSHFQGD--QINAGNNAISDNGVAGAAP 227
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
PN+ PL++FPQ G AG GSL+FLRN+PQFQ LR+MVQ NPQ+LQPML ELGK
Sbjct: 228 GAPNSLPLNMFPQETLS-GVTGAGLGSLEFLRNNPQFQTLRSMVQRNPQILQPMLLELGK 286
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMG 357
QNPQL+R IQEH +FL+LINEPV+ EG++ DQ +PQ I VT ++EAIERLEAMG
Sbjct: 287 QNPQLLRQIQEHHEEFLQLINEPVEASEGDMFDQPEQDVPQEITVTAADQEAIERLEAMG 346
Query: 358 FDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
FDR +V+E F AC++NEELA NYLL++ +FED
Sbjct: 347 FDRGLVIEAFLACDRNEELAVNYLLENAGDFED 379
>gi|326528949|dbj|BAJ97496.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 420
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 220/398 (55%), Positives = 266/398 (66%), Gaps = 40/398 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGTSF++E PE +V +VK IE+ QG +VYPA Q M+IYQGK+LKDDTTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAV--PIST 119
NKVAENSF+VIML+K K + S+ S AP Q + P AATP +A P S
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQPATPVAAATPPVPVASAARSPPSQ 120
Query: 120 EPTPAPTPAPASASVSSVS--------ATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
P A PAP SA S+VS A+ ++ VY AASNLV+G LE +QQILDMGG
Sbjct: 121 APVAASEPAPPSAQPSAVSDTPAAAVTASGDADVYSQAASNLVSGGILEQTVQQILDMGG 180
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA------------RAPGNGQA 219
GTW+RD VVRALRAAYNNPERA++YLYSGIPE E PVA +AP QA
Sbjct: 181 GTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQNLQAPSQAQA 240
Query: 220 ANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPD-----VGSGAAGAGSLDFLRNSPQF 274
A P QP+ S+GPNANPL+LFPQG+P AGAG+LD LR PQF
Sbjct: 241 APLPA-----VQPSGGVSAGPNANPLNLFPQGVPSGGANAGAGVGAGAGALDALRQLPQF 295
Query: 275 QVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE-PVQGGEGNLGDQLA 333
Q L A+VQANPQ+LQPMLQELGKQNPQ++RLIQE+QA+FLRL+NE P G GN+ LA
Sbjct: 296 QALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESGAGGNILGALA 355
Query: 334 GLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACN 371
MPQ++QVTPEEREAI+R++ +L + F C
Sbjct: 356 AQMPQAVQVTPEEREAIQRVQ-------YILMICFLCK 386
>gi|413926348|gb|AFW66280.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 369
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 206/401 (51%), Positives = 261/401 (65%), Gaps = 49/401 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+P DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 62 ENKVAENSFVVIMLTKNK----------RPTGEGSTRSTAPTKAPQSSAPTPAATPATAP 111
ENKV E+ F+V+ML+K K + + +TR P +APQ AP P P T
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQHSNTPATRQAPPLEAPQQ-APQPPVAPIT-- 117
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+++P P AP + + +AASNL++G N++ I Q+++MGG
Sbjct: 118 ------TSQPEGLPAQAPNT--------------HDNAASNLLSGRNVDTIINQLMEMGG 157
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ 231
G+WD+D V RALRAAYNNPERAVEYLYSGIP AE+ P GQ AN+ T
Sbjct: 158 GSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIA----VPIGGQGANT-------TD 206
Query: 232 PAPVTSSG----PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
AP +G PN PLDLFPQ G AG G LDFLRN+PQFQ +R MV NPQ+
Sbjct: 207 RAPTGEAGLSGIPNTAPLDLFPQQGASNAGGGAGGGPLDFLRNNPQFQAVREMVHTNPQI 266
Query: 288 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQ-LAGLMPQSIQVTPEE 346
LQPML EL KQNPQ++RLI+E+ +FL+L+NEP +GGEG+ DQ MP +I VTPEE
Sbjct: 267 LQPMLVELSKQNPQILRLIEENHDEFLQLLNEPFEGGEGDFLDQPEEDEMPHAISVTPEE 326
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
+EAI RLE+MGFDRA V+E F AC++NEELAANYLL+H E
Sbjct: 327 QEAIGRLESMGFDRARVIEAFLACDRNEELAANYLLEHAGE 367
>gi|7715605|gb|AAF68123.1|AC010793_18 F20B17.8 [Arabidopsis thaliana]
Length = 367
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 200/395 (50%), Positives = 261/395 (66%), Gaps = 34/395 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEG-STRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
ENKV E F+V+ML+K+K G ++ S P P + +S+
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQCVRLLLFHSLFPLPH----------LRLSSI 110
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P T S S S T+ + YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 111 YNPVFT---CSCFTYSCSRTTGTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 167
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 168 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 215
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
GPN++PLDLFPQ +G+ G+L+FLRN+ Q +L + A +PMLQELGK
Sbjct: 216 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQVAIL--TISAFSLNCEPMLQELGK 272
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEA 355
QNPQL+RLIQE+QA+FL+L+NEP +G GEG++ DQ MP +I VTP E+EAI+RLEA
Sbjct: 273 QNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEA 332
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
MGFDRA+V+E F AC++NEELAANYLL++ +FED
Sbjct: 333 MGFDRALVIEAFLACDRNEELAANYLLENSGDFED 367
>gi|42572181|ref|NP_974181.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198159|gb|AEE36280.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 351
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 200/395 (50%), Positives = 261/395 (66%), Gaps = 50/395 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G + A + S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKS----GGSAGQASVQTSSVSQPVSATTSSTKP--AAPSTTQS 114
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+P P +P PA ++ + T YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 115 SPVPASPIPAQEQPAAQTDT-----YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 169
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 170 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 217
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
GPN++PLDLFPQ +G+ G+L+FLRN+ QELGK
Sbjct: 218 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNND--------------------QELGK 256
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEA 355
QNPQL+RLIQE+QA+FL+L+NEP +G GEG++ DQ MP +I VTP E+EAI+RLEA
Sbjct: 257 QNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEA 316
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
MGFDRA+V+E F AC++NEELAANYLL++ +FED
Sbjct: 317 MGFDRALVIEAFLACDRNEELAANYLLENSGDFED 351
>gi|226492672|ref|NP_001148810.1| LOC100282427 [Zea mays]
gi|195622286|gb|ACG32973.1| DNA repair protein RAD23-1 [Zea mays]
gi|238014028|gb|ACR38049.1| unknown [Zea mays]
gi|413926349|gb|AFW66281.1| DNA repair protein RAD23-1 isoform 1 [Zea mays]
gi|413926350|gb|AFW66282.1| DNA repair protein RAD23-1 isoform 2 [Zea mays]
gi|413926351|gb|AFW66283.1| DNA repair protein RAD23-1 isoform 3 [Zea mays]
Length = 368
Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 206/401 (51%), Positives = 261/401 (65%), Gaps = 50/401 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+P DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 62 ENKVAENSFVVIML----------TKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP 111
ENKV E+ F+V+ML T + + + +TR P +APQ AP P P T
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQHSNTPATRQAPPLEAPQ-QAPQPPVAPIT-- 117
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+++P P AP + + +AASNL++G N++ I Q+++MGG
Sbjct: 118 ------TSQPEGLPAQAPNT--------------HDNAASNLLSGRNVDTIINQLMEMGG 157
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ 231
G+WD+D V RALRAAYNNPERAVEYLYSGIP AE+ P GQ AN+ T
Sbjct: 158 GSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIA----VPIGGQGANT-------TD 206
Query: 232 PAPVTSSG----PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
AP +G PN PLDLFPQG G AG G LDFLRN+PQFQ +R MV NPQ+
Sbjct: 207 RAPTGEAGLSGIPNTAPLDLFPQGA-SNAGGGAGGGPLDFLRNNPQFQAVREMVHTNPQI 265
Query: 288 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQ-LAGLMPQSIQVTPEE 346
LQPML EL KQNPQ++RLI+E+ +FL+L+NEP +GGEG+ DQ MP +I VTPEE
Sbjct: 266 LQPMLVELSKQNPQILRLIEENHDEFLQLLNEPFEGGEGDFLDQPEEDEMPHAISVTPEE 325
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
+EAI RLE+MGFDRA V+E F AC++NEELAANYLL+H E
Sbjct: 326 QEAIGRLESMGFDRARVIEAFLACDRNEELAANYLLEHAGE 366
>gi|194690718|gb|ACF79443.1| unknown [Zea mays]
gi|414589469|tpg|DAA40040.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 365
Score = 357 bits (916), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 209/400 (52%), Positives = 256/400 (64%), Gaps = 55/400 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV+P D V VK IE +Q YPA QQ+LI+QGK
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGK--------- 51
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
NK + ++TA P + P + AP PI P
Sbjct: 52 ----------------NKGSSSAAPAKTTANQAPPTQTVPVVPPQTSAAPAAPAPIV--P 93
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A +++ +V+ ++E+ YG AASNLVAG+NLEG IQ IL+MGGG WDRDTV+R
Sbjct: 94 VSALAATATASAAPAVAVSTEADSYGQAASNLVAGSNLEGTIQSILEMGGGIWDRDTVLR 153
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP--QPTQPAPVTS-- 237
ALR AYNNPERAVEYLYSGIPEQ +V PT P QP P
Sbjct: 154 ALRVAYNNPERAVEYLYSGIPEQMDV---------------PTSPPSIQPVNPVQAAQAA 198
Query: 238 -----SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPML 292
SGPNANPLDLFPQ LP+ S AG G+LD LRN+ QFQ L +VQANPQ+LQP+L
Sbjct: 199 QTAAPSGPNANPLDLFPQSLPN-ASANAGTGNLDVLRNNVQFQNLLGLVQANPQILQPLL 257
Query: 293 QELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN--LGDQLAGLMPQSIQVTPEEREAI 350
QELGKQNPQ+++LIQE+QA+F+R+INEP++G E N + DQ+A ++I VTPEE EAI
Sbjct: 258 QELGKQNPQVMQLIQENQAEFMRMINEPLEGDEENEMMLDQMAD-AAETIAVTPEENEAI 316
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
RLE MGFDRA+VLEVFFACNKNE+L ANYLLDHMHEF++
Sbjct: 317 LRLEGMGFDRALVLEVFFACNKNEQLTANYLLDHMHEFDN 356
>gi|242060736|ref|XP_002451657.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
gi|241931488|gb|EES04633.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
Length = 369
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 206/391 (52%), Positives = 261/391 (66%), Gaps = 29/391 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+P DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E+ F+V+ML+K K +G T S+ P+ P + P P APQ V +T
Sbjct: 61 ENKVNEDGFLVVMLSKGKT-SGSSGTSSSQPSNTPAARQAPPLDAPQQAPQPPVAPTTTS 119
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P PA A + Y +AAS+L++G+N++ I Q+++MGGG+WDRD V R
Sbjct: 120 QPEGLPAQAPPN-----------TYDNAASSLLSGSNVDTMINQLMEMGGGSWDRDKVQR 168
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG-- 239
ALRAAYNNPERAVEYLYSGIP AEV P GQ AN+ T AP +G
Sbjct: 169 ALRAAYNNPERAVEYLYSGIPVTAEVA----VPIGGQGANT-------TDRAPTGEAGLS 217
Query: 240 --PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
PN PL+LFPQG G AG G LDFLRN+ QFQ +R MV NPQ+LQPML EL K
Sbjct: 218 GIPNTAPLNLFPQGG-SNAGGGAGGGPLDFLRNNQQFQAVREMVHTNPQILQPMLVELSK 276
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQ-LAGLMPQSIQVTPEEREAIERLEAM 356
QNPQ++RLI+E+ +FL+L+NEP +GGEG+ DQ MP +I VTPEE++AI RLE+M
Sbjct: 277 QNPQILRLIEENHDEFLQLLNEPFEGGEGDFLDQPEEDEMPHAISVTPEEQDAIGRLESM 336
Query: 357 GFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
GFDRA V+E F AC++NEELAANYLL+H E
Sbjct: 337 GFDRARVIEAFIACDRNEELAANYLLEHAGE 367
>gi|414885361|tpg|DAA61375.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 339
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 202/355 (56%), Positives = 250/355 (70%), Gaps = 24/355 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV P D V DVK IE++Q YPA QQ+LI+QGKVLKDDTTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAV----PI 117
EN+V EN+F+VIML +NK GS+ S AP K + AP+ PAT PQT+ P
Sbjct: 61 ENQVVENNFLVIMLRQNK-----GSS-SAAPAKVTANQAPSTQTVPATPPQTSAAPDAPA 114
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
P AP +++ +V+ ++E+ YG A SNLVAG+NLEG I+ IL+MGGGTWDRD
Sbjct: 115 PIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGGTWDRD 174
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
TV+RALRAAYNNPERAVEYLYSGIPEQ EV AP P Q QP Q
Sbjct: 175 TVLRALRAAYNNPERAVEYLYSGIPEQMEV----PAPPPSSQPVDPVQAVQPAQ------ 224
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
+GPNANPLDLFPQ LP+ S A G+LD LRN+ QFQ L +VQANPQ+LQP+LQEL K
Sbjct: 225 AGPNANPLDLFPQSLPN-DSANANTGNLDVLRNNSQFQNLLGLVQANPQILQPLLQELRK 283
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGN--LGDQLAGLMPQSIQVTPEEREAI 350
QNP++++LIQE+QA+F+RLI+EP++G E N + DQ+A ++I VTPEE EAI
Sbjct: 284 QNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEENEAI 337
>gi|326529487|dbj|BAK04690.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 367
Score = 343 bits (880), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 203/384 (52%), Positives = 255/384 (66%), Gaps = 23/384 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+ DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQHNDTIMAVKKNIEEIQGKDSYPWGQQLLIHNGKVLKDESTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
EN+V E F+V+ML+K+K S P+ P +S P A P +T
Sbjct: 61 ENQVGEAGFLVVMLSKSKASA-SSGGSSAQPSSTPVTSQAPPVAQPQAPQPQVPSTTTS- 118
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P PA +S+V AAS+L++G+NL+ I QI++MGGG+WDRD V R
Sbjct: 119 --QPERPPAETPLSTVDI---------AASDLLSGSNLDTMINQIMEMGGGSWDRDKVQR 167
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERA++YLYSGIP AEV P GQ AN+ P T + + PN
Sbjct: 168 ALRAAYNNPERAIDYLYSGIPVTAEV----AVPVVGQGANTTAAAPGETGLSGI----PN 219
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
PLDLFPQG GAAG GSLDFLRN+ QFQ LR MV NPQ+LQPMLQEL KQNPQ
Sbjct: 220 TAPLDLFPQGAS-HAGGAAGGGSLDFLRNNQQFQALREMVHTNPQILQPMLQELSKQNPQ 278
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGNLGDQL-AGLMPQSIQVTPEEREAIERLEAMGFDR 360
L+RLIQE+ +FL+L+NE +GG+G+ DQ MP +I VTPEE+EAI RLEAMGF+R
Sbjct: 279 LLRLIQENNDEFLQLLNETFEGGDGDFLDQADQDEMPHAISVTPEEQEAIGRLEAMGFER 338
Query: 361 AIVLEVFFACNKNEELAANYLLDH 384
A V+E FFAC++NE+LAANYLL+H
Sbjct: 339 ARVIEAFFACDRNEQLAANYLLEH 362
>gi|357138066|ref|XP_003570619.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 368
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 204/385 (52%), Positives = 257/385 (66%), Gaps = 24/385 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+ DT+ VK IE +QG D YP QQ+LI+ GK+LKD++TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQQNDTIMAVKKNIEEIQGKDNYPWGQQLLIHTGKILKDESTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
EN+V+E+ +V+ML+K+K + S P+ P + P A A +++VP +T
Sbjct: 61 ENQVSEDGSLVVMLSKSKA-SVSSGASSAQPSSIPVTRQAPPDAQ-IQAAESSVPPTT-- 116
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P PA +++V H AS+L++G+NL+ I QI++MGGG+WDRD V R
Sbjct: 117 TSQPERPPAETPLNTVD---------HVASDLLSGSNLDTMINQIMEMGGGSWDRDKVQR 167
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG-P 240
ALRAAYNNPERAV+YLYSGIP AEV P Q ANS P P SG P
Sbjct: 168 ALRAAYNNPERAVDYLYSGIPVTAEV----AVPVGPQGANSTDAAP----PGVTGLSGIP 219
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
N PL+LFPQG GAAG GSLDFLRN+ QFQ LR MV NPQ+LQPMLQEL KQNP
Sbjct: 220 NTAPLNLFPQGA-SNAGGAAGGGSLDFLRNNQQFQALREMVHTNPQILQPMLQELSKQNP 278
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLGDQ-LAGLMPQSIQVTPEEREAIERLEAMGFD 359
QL+RLIQE+ +FL L+NE G+G+ DQ MP +I VTPEE+EAI RLEAMGFD
Sbjct: 279 QLLRLIQENNDEFLGLLNENFDAGDGDFLDQPDEDEMPHAISVTPEEQEAIGRLEAMGFD 338
Query: 360 RAIVLEVFFACNKNEELAANYLLDH 384
RA V+E FFAC++NE+LA NYLL+H
Sbjct: 339 RARVIEAFFACDRNEQLAVNYLLEH 363
>gi|42572233|ref|NP_974211.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640304|gb|AEE73825.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 299
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 180/305 (59%), Positives = 210/305 (68%), Gaps = 38/305 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS--- 118
ENKVAENSF+VIM+ K+K + S+ S ++A S P + P+ +PQT +S
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQA--KSIPPSTSQPSISPQTPASVSAPV 118
Query: 119 -----------------------TEPTPAPTPAPASASVS-----SVSATSESGVYGHAA 150
T TP P P PA+ S S S S+ VYG AA
Sbjct: 119 APAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAA 178
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV 210
SNL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PV
Sbjct: 179 SNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPV 238
Query: 211 ARAPGN-GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
AR P + GQ AN P Q QPA +SGPNANPLDLFPQGLP+VG G GAG+LDFLR
Sbjct: 239 ARPPASAGQPANPPAQT---QQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLR 294
Query: 270 NSPQF 274
NS Q
Sbjct: 295 NSQQV 299
>gi|414885366|tpg|DAA61380.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 221
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/224 (66%), Positives = 174/224 (77%), Gaps = 14/224 (6%)
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ 228
MGGGTWDRDTV+RALRAAYNNPERAVEYLYSGIPEQ EV AP P Q Q
Sbjct: 1 MGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP----APPPSSQPVDPVQAVQ 56
Query: 229 PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
P Q +GPNANPLDLFPQ LP+ S A G+LD LRN+ QFQ L +VQANPQ+L
Sbjct: 57 PAQ------AGPNANPLDLFPQSLPN-DSANANTGNLDVLRNNSQFQNLLGLVQANPQIL 109
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN--LGDQLAGLMPQSIQVTPEE 346
QP+LQEL KQNP++++LIQE+QA+F+RLI+EP++G E N + DQ+A ++I VTPEE
Sbjct: 110 QPLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEE 168
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EAI RLE MGFDRA+VLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 169 NEAILRLEGMGFDRALVLEVFFACNKNEQLAANYLLDHMHEFDN 212
>gi|414589472|tpg|DAA40043.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 225
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/233 (63%), Positives = 172/233 (73%), Gaps = 28/233 (12%)
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP- 227
MGGG WDRDTV+RALR AYNNPERAVEYLYSGIPEQ +V PT P
Sbjct: 1 MGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDV---------------PTSPPS 45
Query: 228 -QPTQPAPVTS-------SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRA 279
QP P SGPNANPLDLFPQ LP+ S AG G+LD LRN+ QFQ L
Sbjct: 46 IQPVNPVQAAQAAQTAAPSGPNANPLDLFPQSLPN-ASANAGTGNLDVLRNNVQFQNLLG 104
Query: 280 MVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN--LGDQLAGLMP 337
+VQANPQ+LQP+LQELGKQNPQ+++LIQE+QA+F+R+INEP++G E N + DQ+A
Sbjct: 105 LVQANPQILQPLLQELGKQNPQVMQLIQENQAEFMRMINEPLEGDEENEMMLDQMAD-AA 163
Query: 338 QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
++I VTPEE EAI RLE MGFDRA+VLEVFFACNKNE+L ANYLLDHMHEF++
Sbjct: 164 ETIAVTPEENEAILRLEGMGFDRALVLEVFFACNKNEQLTANYLLDHMHEFDN 216
>gi|356557201|ref|XP_003546906.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 284
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 143/250 (57%), Positives = 184/250 (73%), Gaps = 19/250 (7%)
Query: 146 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQA 205
YG AASNLVAG++LE IQQI+D+GGG+WDRDTV RALRAAYNNP+RAV+YLYS IPE A
Sbjct: 49 YGQAASNLVAGSSLEQTIQQIMDLGGGSWDRDTVSRALRAAYNNPKRAVDYLYSRIPEAA 108
Query: 206 EVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG-----PNANPLDLFPQGLPDVGSGAA 260
E+ A +P + Q T+ VT+ PN++PL++ PQ +P G+GA
Sbjct: 109 EIAVPA----------APYPISQTTETGGVTAGAVWGPVPNSSPLNMSPQVIPVSGAGA- 157
Query: 261 GAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP 320
G GSL+ + +FQ LR+MVQ+NPQ+LQP+LQELGKQN L RLIQEH +FL+LIN+P
Sbjct: 158 GIGSLELYKKCQEFQALRSMVQSNPQILQPVLQELGKQNLSLSRLIQEHHGEFLQLINDP 217
Query: 321 VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANY 380
V+G EG++ DQ MP +I VTP E+EAI RLEAMGFDRA V+E AC+++E+LAANY
Sbjct: 218 VEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIE---ACDRDEQLAANY 274
Query: 381 LLDHMHEFED 390
LL++ +FED
Sbjct: 275 LLENAGDFED 284
>gi|223945395|gb|ACN26781.1| unknown [Zea mays]
Length = 294
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 164/288 (56%), Positives = 200/288 (69%), Gaps = 14/288 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT+F++E P+ +V DVK IET QG Y A QQMLIYQGK+LKD+TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT--AVPIST 119
N VAENSF+VIML+K K + ST +TA A + P A A+ +T P++T
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPVAT 120
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
T P+ P +A ++V+AT ++ VY AASNLV+GNNLE IQQILDMGGGTW+RDTV
Sbjct: 121 AETAPPSVQPQAAPAATVAATDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERDTV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAAN----SPTQ--MPQPTQPA 233
VRALRAAYNNPERA++YLYSGIPE E QPVARAP GQ N SP Q + P QP+
Sbjct: 181 VRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASPAQPAVALPVQPS 240
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSG-----AAGAGSLDFLRNSPQFQV 276
P S+GPNANPL+LFPQG+P GS AG+G+LD LR PQ +
Sbjct: 241 PA-SAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQVVI 287
>gi|402896747|ref|XP_003911450.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Papio
anubis]
Length = 409
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 163/425 (38%), Positives = 242/425 (56%), Gaps = 63/425 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA PT PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPTEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 341 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 399
Query: 380 YLLDH 384
+LL
Sbjct: 400 FLLQQ 404
>gi|90079451|dbj|BAE89405.1| unnamed protein product [Macaca fascicularis]
Length = 409
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 162/425 (38%), Positives = 242/425 (56%), Gaps = 63/425 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P ++ P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASSTPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 341 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 399
Query: 380 YLLDH 384
+LL
Sbjct: 400 FLLQQ 404
>gi|61370793|gb|AAX43553.1| RAD23-like B [synthetic construct]
Length = 410
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 162/425 (38%), Positives = 242/425 (56%), Gaps = 63/425 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T +PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGVPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 341 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 399
Query: 380 YLLDH 384
+LL
Sbjct: 400 FLLQQ 404
>gi|18089249|gb|AAH20973.1| RAD23B protein [Homo sapiens]
gi|61361084|gb|AAX41987.1| RAD23-like B [synthetic construct]
gi|123994101|gb|ABM84652.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|124126815|gb|ABM92180.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
Length = 409
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 162/425 (38%), Positives = 242/425 (56%), Gaps = 63/425 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T +PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGVPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 341 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 399
Query: 380 YLLDH 384
+LL
Sbjct: 400 FLLQQ 404
>gi|410225240|gb|JAA09839.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 162/425 (38%), Positives = 242/425 (56%), Gaps = 63/425 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAPT-----------KAPQSSAPTPA---- 104
E K+ E +FVV+M+TK K + +T+ +AP Q+ P PA
Sbjct: 61 EYKIEEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPT 120
Query: 105 ATPATAPQTAVPISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+TPA+ P + S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASIPPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 341 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 399
Query: 380 YLLDH 384
+LL
Sbjct: 400 FLLQQ 404
>gi|4506387|ref|NP_002865.1| UV excision repair protein RAD23 homolog B isoform 1 [Homo sapiens]
gi|397479268|ref|XP_003810947.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pan paniscus]
gi|426362613|ref|XP_004048452.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Gorilla gorilla gorilla]
gi|1709985|sp|P54727.1|RD23B_HUMAN RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=hHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|498148|dbj|BAA04652.1| XP-C repair complementing protein (p58/HHR23B) [Homo sapiens]
gi|24414631|gb|AAN47194.1| RAD23 homolog B (S. cerevisiae) [Homo sapiens]
gi|60819839|gb|AAX36514.1| RAD23-like B [synthetic construct]
gi|61363174|gb|AAX42348.1| RAD23-like B [synthetic construct]
gi|119579421|gb|EAW59017.1| RAD23 homolog B (S. cerevisiae), isoform CRA_b [Homo sapiens]
gi|193785017|dbj|BAG54170.1| unnamed protein product [Homo sapiens]
gi|261858390|dbj|BAI45717.1| RAD23 homolog B [synthetic construct]
Length = 409
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 162/425 (38%), Positives = 241/425 (56%), Gaps = 63/425 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 341 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 399
Query: 380 YLLDH 384
+LL
Sbjct: 400 FLLQQ 404
>gi|387849175|ref|NP_001248717.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815240|gb|AFE79494.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815242|gb|AFE79495.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815244|gb|AFE79496.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815246|gb|AFE79497.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|383410191|gb|AFH28309.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|384942154|gb|AFI34682.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 409
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 162/425 (38%), Positives = 241/425 (56%), Gaps = 63/425 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 341 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 399
Query: 380 YLLDH 384
+LL
Sbjct: 400 FLLQQ 404
>gi|54696272|gb|AAV38508.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|54696274|gb|AAV38509.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|60654195|gb|AAX29790.1| RAD23-like B [synthetic construct]
gi|60831141|gb|AAX36959.1| RAD23-like B [synthetic construct]
gi|61365892|gb|AAX42780.1| RAD23-like B [synthetic construct]
gi|61365900|gb|AAX42781.1| RAD23-like B [synthetic construct]
Length = 410
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 162/425 (38%), Positives = 241/425 (56%), Gaps = 63/425 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 341 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 399
Query: 380 YLLDH 384
+LL
Sbjct: 400 FLLQQ 404
>gi|410259964|gb|JAA17948.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 161/425 (37%), Positives = 240/425 (56%), Gaps = 63/425 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAPT-----------KAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 341 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 399
Query: 380 YLLDH 384
+LL
Sbjct: 400 FLLQQ 404
>gi|358346473|ref|XP_003637292.1| RAD23 protein [Medicago truncatula]
gi|355503227|gb|AES84430.1| RAD23 protein [Medicago truncatula]
Length = 213
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 135/222 (60%), Positives = 167/222 (75%), Gaps = 9/222 (4%)
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ 228
MGGG+WDRDTV RALRAA+NNPERAV+YLYSGIPE AEV A Q ++PT+
Sbjct: 1 MGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEVAVPAA-----QYPSNPTETGG 55
Query: 229 PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
T V PN++PL++FPQ + AGAGSLDFLRN+PQFQ LR MVQ+NPQ+L
Sbjct: 56 VT--TGVVPGVPNSSPLNMFPQ--ETISGAGAGAGSLDFLRNNPQFQALRTMVQSNPQIL 111
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEERE 348
QP+LQELGKQNP L+RLI EH ++FL+LINEP+ G EG+ DQ MP ++ VTP E+E
Sbjct: 112 QPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQE 171
Query: 349 AIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
AI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 172 AIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 213
>gi|332222429|ref|XP_003260372.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Nomascus leucogenys]
Length = 409
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 160/423 (37%), Positives = 240/423 (56%), Gaps = 63/423 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQLTFWIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAPTKAP-----------QSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVPIS----TEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S +EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASVTASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 341 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 399
Query: 380 YLL 382
+LL
Sbjct: 400 FLL 402
>gi|363744612|ref|XP_429175.3| PREDICTED: UV excision repair protein RAD23 homolog B [Gallus
gallus]
Length = 403
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 154/421 (36%), Positives = 229/421 (54%), Gaps = 65/421 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNK------------RPTGEGSTRSTAPTKAPQSSAPTPA----- 104
E K+ E +FVV+M+TK K T S + APT +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAATAATTATQQTNSTTGVSVTTAAPTPVSAPTPAAAPVPAPD 120
Query: 105 ------------ATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASN 152
+ P + P+ P + +P APT S++ S+ TS S ++ A S
Sbjct: 121 PTTPAPAAVACESEPVSTPKEEKP-AEKPADAPTAVSLSSNESTTGDTSRSNLFEDAISA 179
Query: 153 LVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVAR 212
LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GI
Sbjct: 180 LVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGI----------- 225
Query: 213 APGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSP 272
PG+ QA PTQ S+G + + + + G L+FLRN P
Sbjct: 226 -PGDNQAVAEPTQ---------AASTGTSQSSAVAAAVATIPTTATSLGGHPLEFLRNQP 275
Query: 273 QFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV----QGGEGNL 328
QFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F+ ++NEPV QG G+
Sbjct: 276 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNEPVIESRQGLSGSD 335
Query: 329 GDQLAGLMPQS-------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYL 381
G + ++ IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+L
Sbjct: 336 DSASTGGVAEAGNGHMSYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 395
Query: 382 L 382
L
Sbjct: 396 L 396
>gi|291382841|ref|XP_002708173.1| PREDICTED: UV excision repair protein RAD23 homolog B [Oryctolagus
cuniculus]
Length = 409
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 161/425 (37%), Positives = 235/425 (55%), Gaps = 63/425 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEG-------------STRSTAPTKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K T + S+ T Q+S P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSATTTAVSSSTATAVTQASTPAPALAPT 120
Query: 109 TAPQTAVPIST---EPTPA-------PTPAPASASVS--------SVSATSESGVYGHAA 150
+ P + P ST EP PA P P V+ + +S S ++ A
Sbjct: 121 STPASIAPASTTSSEPAPASATKQEKPAEKPVETPVATSPTSTDSTSGDSSRSNLFEDAT 180
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV 210
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V
Sbjct: 181 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 237
Query: 211 ARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRN 270
P QAA T PQ + A ++ + ++G L+FLRN
Sbjct: 238 VEPP---QAAG--TGAPQSSAVAAGAATTTAT------------TTTTSSGGHPLEFLRN 280
Query: 271 SPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ-------- 322
PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 QPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGSQGGG 340
Query: 323 ---GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 341 GGGSGNAGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 399
Query: 380 YLLDH 384
+LL
Sbjct: 400 FLLQQ 404
>gi|62898690|dbj|BAD97199.1| UV excision repair protein RAD23 homolog B variant [Homo sapiens]
Length = 409
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 160/425 (37%), Positives = 240/425 (56%), Gaps = 63/425 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+R VEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRGVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T +PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGVPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAI RL+A+GF +V++ +FAC KNE LAAN
Sbjct: 341 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIGRLKALGFPEGLVIQAYFACEKNENLAAN 399
Query: 380 YLLDH 384
+LL
Sbjct: 400 FLLQQ 404
>gi|1044899|emb|CAA63146.1| MHR23B [Mus musculus]
gi|20380714|gb|AAH27747.1| RAD23b homolog (S. cerevisiae) [Mus musculus]
gi|148670319|gb|EDL02266.1| RAD23b homolog (S. cerevisiae), isoform CRA_c [Mus musculus]
gi|1587278|prf||2206377B MHR23B gene
Length = 416
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 156/438 (35%), Positives = 230/438 (52%), Gaps = 82/438 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTP------------------ 103
E K+ E +FVV+M+TK K T + P SS P+P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVT------TAVPATTQPSSTPSPTTVSSSPAVAAAQAPAPT 114
Query: 104 -----AATPATAPQTAVPISTEPTPA-------PTPAPASASV--------SSVSATSES 143
+TPA+ + S+EP PA P PA V S+ +S S
Sbjct: 115 PALAPTSTPASTTPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 232 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 274
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 334
Query: 324 G-----------------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEV 366
G + + +G M IQVTP+E+EAIERL+A+GF +V++
Sbjct: 335 AGGQGGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQA 393
Query: 367 FFACNKNEELAANYLLDH 384
+FAC KNE LAAN+LL
Sbjct: 394 YFACEKNENLAANFLLQQ 411
>gi|171906578|ref|NP_033037.2| UV excision repair protein RAD23 homolog B [Mus musculus]
gi|341941948|sp|P54728.2|RD23B_MOUSE RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=mHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|74144435|dbj|BAE36067.1| unnamed protein product [Mus musculus]
gi|74144449|dbj|BAE36071.1| unnamed protein product [Mus musculus]
gi|74145328|dbj|BAE36124.1| unnamed protein product [Mus musculus]
gi|74211909|dbj|BAE29298.1| unnamed protein product [Mus musculus]
Length = 416
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 156/438 (35%), Positives = 230/438 (52%), Gaps = 82/438 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPA----------------- 104
E K+ E +FVV+M+TK K T + P SS P+P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVT------TAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPT 114
Query: 105 ------ATPATAPQTAVPISTEPTPA-------PTPAPASASV--------SSVSATSES 143
+TPA+ + S+EP PA P PA V S+ +S S
Sbjct: 115 PALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 232 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 274
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 334
Query: 324 G-----------------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEV 366
G + + +G M IQVTP+E+EAIERL+A+GF +V++
Sbjct: 335 AGSQGGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQA 393
Query: 367 FFACNKNEELAANYLLDH 384
+FAC KNE LAAN+LL
Sbjct: 394 YFACEKNENLAANFLLQQ 411
>gi|387017980|gb|AFJ51108.1| UV excision repair protein RAD23 homolog A-like [Crotalus
adamanteus]
Length = 360
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 159/402 (39%), Positives = 237/402 (58%), Gaps = 62/402 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
+ +KTL+ +F + ++P++TV +K KIE +G + +P + Q LIY GK+L DD ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPDETVRVLKEKIEAEKGKEAFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATA---PQTAVPISTE 120
K+ E +FVV+M+TKNK TG G+ S+ PT A ++ PTP++ P A P A P S E
Sbjct: 65 KIDEKNFVVVMVTKNK--TGSGAPVSS-PTDAAPTAEPTPSSGPTAATVSPLQASPSSEE 121
Query: 121 --PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
P + T +P ++V SV ++ G AAS LV G+ E + +I+ MG ++R+
Sbjct: 122 KPPEESVTVSPLESTVGSVPSSGSMGREDDAASTLVTGSEYETMLTEIMSMG---YERER 178
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQP-TQPAPVTS 237
VV ALRA+YNNP RAVEYL +GI PG+ + +P Q QP QPAP
Sbjct: 179 VVAALRASYNNPHRAVEYLLTGI------------PGSSEPERAPIQESQPQDQPAP--- 223
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
G L+FLR+ PQFQ +R ++Q NP LL +LQ+LG+
Sbjct: 224 ----------------------EGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQ 261
Query: 298 QNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEERE 348
+NPQL++ I +HQ F++++NEP ++G G +G++ + IQVTP+E+E
Sbjct: 262 ENPQLLQQISQHQEQFIQMLNEPLGEMADIADIEGEMGAIGEEAPQM--NYIQVTPQEKE 319
Query: 349 AIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
AIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 320 AIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 359
>gi|57094213|ref|XP_538778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Canis lupus familiaris]
Length = 406
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 156/423 (36%), Positives = 232/423 (54%), Gaps = 66/423 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRST-------------------------APTK 94
E K+ E +FVV+M+TK K T +T+ + APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSSTAPTVVQAPAPPVLAPTP 120
Query: 95 APQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSAT----SESGVYGHAA 150
+P S P PA + AP T+V +P P P + S ++ +T S S ++ A
Sbjct: 121 SPASVTPAPATSSEPAP-TSVTQQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDAT 179
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV 210
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V
Sbjct: 180 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 236
Query: 211 ARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGS-LDFLR 269
P P S+G + + + A+ G L+FLR
Sbjct: 237 VDTP-------------------PAVSTGAPPSSVAAAAATTTASTTTASPGGHPLEFLR 277
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 278 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 337
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 338 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 396
Query: 380 YLL 382
+LL
Sbjct: 397 FLL 399
>gi|45829444|gb|AAH68193.1| Rad23b protein [Mus musculus]
Length = 415
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 157/438 (35%), Positives = 230/438 (52%), Gaps = 83/438 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPA----------------- 104
E K+ E +FVV+M+TK K T + P SS P+P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVT------TAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPT 114
Query: 105 ------ATPATAPQTAVPISTEPTPA-------PTPAPASASV--------SSVSATSES 143
+TPA+ + S+EP PA P PA V S+ +S S
Sbjct: 115 PALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 232 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 274
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLA-LLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 333
Query: 324 G-----------------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEV 366
G + + +G M IQVTP+E+EAIERL+A+GF +VL+
Sbjct: 334 AGSQGGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVLQA 392
Query: 367 FFACNKNEELAANYLLDH 384
+FAC KNE LAAN+LL
Sbjct: 393 YFACEKNENLAANFLLQQ 410
>gi|348570354|ref|XP_003470962.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Cavia
porcellus]
Length = 409
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 159/423 (37%), Positives = 233/423 (55%), Gaps = 63/423 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT-------------GEGSTRSTAPTKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K T + S+ T Q+S P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSSPVSTTTVSSSTATAVAQASTPAPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-----------PTPAPASASVSSVSAT----SESGVYGHA 149
+ P P S+EP PA P P ++S +S T S S ++ A
Sbjct: 121 STPAPIAPAVTTASSEPVPASAAQQEKPAEKPAETPPASSPTSTDNTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T + + + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--------------TGAPQASAVAAAGATTTAATTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 341 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 399
Query: 380 YLL 382
+LL
Sbjct: 400 FLL 402
>gi|74178713|dbj|BAE34014.1| unnamed protein product [Mus musculus]
Length = 416
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 154/437 (35%), Positives = 225/437 (51%), Gaps = 80/437 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPA----------------- 104
E K+ E +FVV+M+TK K T + P SS P+P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVT------TAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPT 114
Query: 105 ------ATPATAPQTAVPISTEPTPA-------PTPAPASASV--------SSVSATSES 143
+TPA+ + S+EP PA P PA V S+ +S S
Sbjct: 115 PALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 232 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 274
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 334
Query: 324 GEGNLGDQLAGLMPQS----------------IQVTPEEREAIERLEAMGFDRAIVLEVF 367
G IQVTP+E+EAIERL+A+GF +V++ +
Sbjct: 335 AGSQGEGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAY 394
Query: 368 FACNKNEELAANYLLDH 384
FAC KNE LAAN+LL
Sbjct: 395 FACEKNENLAANFLLQQ 411
>gi|74209288|dbj|BAE25006.1| unnamed protein product [Mus musculus]
Length = 411
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 155/432 (35%), Positives = 226/432 (52%), Gaps = 75/432 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPA----------------- 104
E K+ E +FVV+M+TK K T + P SS P+P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVT------TAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPT 114
Query: 105 ------ATPATAPQTAVPISTEPTPA-------PTPAPASASV--------SSVSATSES 143
+TPA+ + S+EP PA P PA V S+ +S S
Sbjct: 115 PALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 232 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 274
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 334
Query: 324 GEGNLGDQLAGLMPQS-----------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNK 372
G G IQVTP+E+EAIERL+A+GF +V++ +FAC K
Sbjct: 335 AGSQGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 394
Query: 373 NEELAANYLLDH 384
NE LAAN+LL
Sbjct: 395 NENLAANFLLQQ 406
>gi|384248073|gb|EIE21558.1| UV excision repair protein Rad23 [Coccomyxa subellipsoidea C-169]
Length = 382
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 171/389 (43%), Positives = 231/389 (59%), Gaps = 22/389 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
+K+ KT++G F++E+ D + +VK KIE VQG+D +PAA Q++IYQGKVLKDDTTLE
Sbjct: 4 VKVTFKTVQGNKFELELDSSDKIENVKQKIEGVQGAD-FPAANQVIIYQGKVLKDDTTLE 62
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENK+ +FVV+M+ + + ++ +P K ++ T A PA A TA
Sbjct: 63 ENKITHENFVVVMIQR--------ARKAASPKKEEPAAPTTTAPAPAEAAPTA---PAAE 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASN-LVAGNNLEGAIQQILDMGGGTWDRDTVV 180
PA P A+ ++ +A + G SN L+ G LE I I++MG +DR+ VV
Sbjct: 112 VPAQQPRAAAVPAAAAAAPAAGAAAGDLNSNSLLMGTQLESTIAGIVEMG---FDREEVV 168
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RA+RAA+NNP+RAVEYL +GIP E A A S +SGP
Sbjct: 169 RAMRAAFNNPDRAVEYLMTGIPNNVEAPAPAPGASPAAGAVSAAPAAGTPATGGGPASGP 228
Query: 241 NANPLDLFPQGLPDVGSGAAGAGS-LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
NA PLD+F P GA GA LDFLR++PQF LR +VQ+NP +LQPMLQELGKQN
Sbjct: 229 NAQPLDMFAPQAPAGAGGAGGAAGPLDFLRSNPQFIALRQIVQSNPMILQPMLQELGKQN 288
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL---AGLMPQSIQV--TPEEREAIERLE 354
P+L+ LI +Q +FLR+INEP L +L A L P ++ V T EE+ AI+RLE
Sbjct: 289 PELLTLINANQQEFLRIINEPPSVIMFWLTVRLLLFAALPPGAVAVHLTEEEQAAIQRLE 348
Query: 355 AMGFDRAIVLEVFFACNKNEELAANYLLD 383
+GFDR +E F C ++E LAAN+L D
Sbjct: 349 TLGFDRNRCIEAFLLCERDETLAANFLFD 377
>gi|148226348|ref|NP_001082494.1| RAD23 homolog B [Xenopus laevis]
gi|28277263|gb|AAH44089.1| MGC53561 protein [Xenopus laevis]
gi|28278600|gb|AAH44115.1| MGC53561 protein [Xenopus laevis]
Length = 412
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 155/447 (34%), Positives = 233/447 (52%), Gaps = 94/447 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ E+TV +K KIE +G+D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGNDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQS----------------------- 98
E K+ E +FVV+M+TK K G+ +AP+ A
Sbjct: 61 EYKIDEKNFVVVMVTKPK-----GAACPSAPSPAVSQPVSAAAPAPASPPLTYTPIARQN 115
Query: 99 -----------------SAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATS 141
+APT + TAP+ P +P T +P+S S + +S
Sbjct: 116 APIPLPVPLPLPTVSAPAAPTSELSTTTAPKEEKPEEKTVSPPETESPSSTECSLPTDSS 175
Query: 142 ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GI
Sbjct: 176 RPSLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGI 232
Query: 202 PEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAG 261
P +E Q VA P +A +S PT+P PV + + + G
Sbjct: 233 PSDSEGQAVAEPP---EALSS-----TPTEPLPVAAGAAATTT---------VPSTPSTG 275
Query: 262 AGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV 321
LDFL+N PQFQ +R ++Q NP LL +LQ++G++NP L++ I +HQ F++++N+PV
Sbjct: 276 GNPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQMLNDPV 335
Query: 322 ------------------QGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIV 363
+ G G + IQVTP+E+EAIERL+A+GF +V
Sbjct: 336 PESGGQGGGGGGGRGVAAEAGSGQMN---------YIQVTPQEKEAIERLKALGFPEGLV 386
Query: 364 LEVFFACNKNEELAANYLLDHMHEFED 390
++ +FAC KNE LAAN+LL F+D
Sbjct: 387 IQAYFACEKNENLAANFLLQ--QNFDD 411
>gi|70778952|ref|NP_001020446.1| UV excision repair protein RAD23 homolog B [Rattus norvegicus]
gi|123789085|sp|Q4KMA2.1|RD23B_RAT RecName: Full=UV excision repair protein RAD23 homolog B
gi|68534740|gb|AAH98674.1| RAD23 homolog B (S. cerevisiae) [Rattus norvegicus]
gi|149037170|gb|EDL91701.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 154/434 (35%), Positives = 226/434 (52%), Gaps = 79/434 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTG-------------------------------------E 84
E K+ E +FVV+M+TK K T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPT 120
Query: 85 GSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESG 144
+ ST P SS P P T AT P+ + +PAPA S+ +S S
Sbjct: 121 STPASTTPASTTASSEPAP--TGATQPEKPAEKPAQTPVLTSPAPAD---STPGDSSRSN 175
Query: 145 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD 232
Query: 205 AEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGS 264
E Q V P P V++ P + + + +G
Sbjct: 233 RESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGHP 275
Query: 265 LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG 324
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 276 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEA 335
Query: 325 ----------------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFF 368
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +F
Sbjct: 336 GGQGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYF 394
Query: 369 ACNKNEELAANYLL 382
AC KNE LAAN+LL
Sbjct: 395 ACEKNENLAANFLL 408
>gi|417400397|gb|JAA47148.1| Putative nucleotide excision repair factor nef2 rad23 component
[Desmodus rotundus]
Length = 408
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 155/423 (36%), Positives = 231/423 (54%), Gaps = 64/423 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNK-------------RPTGEGSTRSTAPTKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K P + S+ Q PTPA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPTTTQQSNPATTTTISSSTAPAVAQVPTPTPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPASASVSSVSATS--------ESGVYGHA 149
P + P +S+E PA P PA V++ ++ S ++ A
Sbjct: 121 PTPASVTPASTTVSSESAPASATKQENPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P PA T+ P ++ + ++G L+FLR
Sbjct: 238 VVDPP-----------------PA-ATTGAPQSSVAAAAATTTATTTTTSSGGHPLEFLR 279
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV-------- 321
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPV
Sbjct: 280 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 339
Query: 322 --QGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
GG G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 340 GSGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 398
Query: 380 YLL 382
+LL
Sbjct: 399 FLL 401
>gi|392884282|gb|AFM90973.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 153/409 (37%), Positives = 222/409 (54%), Gaps = 51/409 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I VKTL+ SF ++++PE V +K KIET +G D +P A Q LIY GK+L D+T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT---AVPI 117
E K+ E FVV+M+TK K P+ + + A PQ ++ TP PA++P VP
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASSPTATTETVPT 120
Query: 118 ST--EPTPAPTPAPAS-------------ASVSSVSATSESGVYGHAASNLVAGNNLEGA 162
+T E A P S +++ + SG++ A S LV G E
Sbjct: 121 NTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSGLFDVATSALVTGQQYETM 180
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
+ +I MG + R+ VV AL+A++NNP+RAVEYL GIP G+ A S
Sbjct: 181 VTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIP--------------GERARS 223
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
PQ T T S A P + + L+FLRN PQF +R ++Q
Sbjct: 224 SVNNPQQTTGTACTGSAQPAAP------------APTSRENPLEFLRNQPQFHQMRQILQ 271
Query: 283 ANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP-QSIQ 341
NP LL +L +LG++NP L++ I +HQ +F++++NEP+Q + AG +Q
Sbjct: 272 QNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVAVTSAGEQQMDHLQ 331
Query: 342 VTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
VTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 332 VTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLLQ--QNFDD 378
>gi|301762141|ref|XP_002916489.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ailuropoda melanoleuca]
Length = 408
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 230/426 (53%), Gaps = 70/426 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP--------------------------- 92
E K+ E +FVV+M+TK K T +T+ + P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPT 120
Query: 93 ------TKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVY 146
T AP +++ PA AT P+ + +P P +A+ S+ +S S ++
Sbjct: 121 PSPASVTPAPTTASSEPAPASATQPEKP---AEKPAETPVATSPTATDSTSGDSSRSNLF 177
Query: 147 GHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP +
Sbjct: 178 EDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRD 234
Query: 207 VQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLD 266
Q V P PA V++ P ++ + G L+
Sbjct: 235 SQAVVDTP-----------------PA-VSTGAPPSSVAAAAATTTASTTTANPGGHPLE 276
Query: 267 FLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG-- 324
FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 277 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 336
Query: 325 --------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEEL 376
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE L
Sbjct: 337 QGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 395
Query: 377 AANYLL 382
AAN+LL
Sbjct: 396 AANFLL 401
>gi|348535033|ref|XP_003455006.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 373
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 156/400 (39%), Positives = 235/400 (58%), Gaps = 49/400 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F +++ E+TV +K +IE +G +++ A Q LIY GK+L DD+ L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVRTLKERIEQEKGKEIFSVAGQKLIYAGKILSDDSPLK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA---TPATAPQTAVPIS 118
E K+ E +FVV+M+TK K+ T S T AP S PAA + +T+ + A S
Sbjct: 61 EYKIDEKNFVVVMVTKPKK----APTASQPSTAAPAPSTTAPAAQSDSSSTSDKPAEQSS 116
Query: 119 TEPTPAPT-PAPASASVSSVSATSESG-VYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
T+ P + P+ AS +SV + ++ + A SNLV G++ + + +++ MG ++R
Sbjct: 117 TDDKPEESQPSTTEASSTSVGRSGDAANLISEAVSNLVTGSSYDAMVNEMMLMG---YER 173
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN--GQAANSPTQMPQPTQPAP 234
+ VV ALRA++NNP+RA+EYL +GIP +R GN G+ A +P P PA
Sbjct: 174 EQVVAALRASFNNPDRAMEYLLTGIP--------SRNQGNASGRDAVAPPASGTPAVPAG 225
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGS-LDFLRNSPQFQVLRAMVQANPQLLQPMLQ 293
S+ N S +AG G+ L FLRN PQFQV+R ++Q N LL +LQ
Sbjct: 226 NASAPANTR------------SSPSAGGGNPLSFLRNQPQFQVMRQLIQQNAALLPALLQ 273
Query: 294 ELGKQNPQLVRLIQEHQADFLRLINEPV---------QGGEGNLGDQLAGLMPQSIQVTP 344
E+G++NP+L++ I HQ F++++NEPV G G G+Q+ IQVTP
Sbjct: 274 EIGRENPELLQEISSHQEQFIQMLNEPVPEPVPGGGSSGAGGGGGNQM-----NYIQVTP 328
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 329 QEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 368
>gi|427787569|gb|JAA59236.1| Putative nucleotide excision repair factor nef2 rad23 component
[Rhipicephalus pulchellus]
Length = 397
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 160/407 (39%), Positives = 232/407 (57%), Gaps = 32/407 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +EV P +TV K +IE +G D YPA Q LIY GK+L DD+ +
Sbjct: 1 MIVTLKTLQQQTFKIEVDPSETVKVFKERIEEKKGKD-YPAHCQKLIYAGKILSDDSKMS 59
Query: 62 ENKVAENSFVVIMLTKNKRPT-------GEGSTRSTAPTKAPQSSAPTPAATPATAPQTA 114
E ++ E FVVIM+TK K+ G G+T + A P +A T A A P
Sbjct: 60 EYEIDEKKFVVIMVTKPKQSVDATAVTPGPGATSTVASAGTPSPAAGTQPAAEAQKP-AE 118
Query: 115 VPISTEPTPAPTPAPASASV-SSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
P T +PA +PA ++A+ +S A +E+ AAS LV G+ E +QQI++MG
Sbjct: 119 TPSGTSKSPAQSPAHSAATTPTSRPAAAETAGLAMAASALVMGDEYERMVQQIMEMG--- 175
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPG-NGQAANSPTQMPQPTQP 232
++R V RALRA++NNP+RAVEYL +GIP ++ P + G ++ +P +P T
Sbjct: 176 YERPQVERALRASFNNPDRAVEYLLTGIPP-SQQDPAEESHGATEESEEAPRSVPSDT-- 232
Query: 233 APVTSSGPNANPLDLFPQGLPDVGSGAAGAGS----LDFLRNSPQFQVLRAMVQANPQLL 288
S P + G P + AA G+ L FLR PQFQ +R ++Q NPQLL
Sbjct: 233 ---AMSSPQSQHGTTGGGGGPLEAALAAEGGNPEDPLAFLRFQPQFQQMRQVIQQNPQLL 289
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--QGGEGNLGDQLAGLMPQSI------ 340
+LQ+LG+ NPQL++LI +Q F+R++NEP GG G +
Sbjct: 290 NAVLQQLGQTNPQLLQLISRNQEAFVRMLNEPSPPPGGASQGGAPGGLGSGGAPIEVNYG 349
Query: 341 QVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
QVTP+++EAIERL+A+GF +V++ +FAC+KNE LAAN+LL ++
Sbjct: 350 QVTPQDKEAIERLKALGFPEYLVVQAYFACDKNENLAANFLLSQNYD 396
>gi|392884316|gb|AFM90990.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 152/409 (37%), Positives = 221/409 (54%), Gaps = 51/409 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I VKTL+ SF ++++PE V +K KIET +G D +P A Q LIY GK+L D+T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT---AVPI 117
E K+ E FVV+M+TK K P+ + + A PQ ++ TP PA++P VP
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASSPTATTETVPT 120
Query: 118 ST--EPTPAPTPAPAS-------------ASVSSVSATSESGVYGHAASNLVAGNNLEGA 162
+T E A P S +++ + S ++ A S LV G E
Sbjct: 121 NTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSALVTGQQYETM 180
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
+ +I MG + R+ VV AL+A++NNP+RAVEYL GIP G+ A S
Sbjct: 181 VTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIP--------------GERARS 223
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
PQ T T S A P + + L+FLRN PQF +R ++Q
Sbjct: 224 SVNNPQQTTGTACTGSAQPAAP------------APTSRENPLEFLRNQPQFHQMRQILQ 271
Query: 283 ANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP-QSIQ 341
NP LL +L +LG++NP L++ I +HQ +F++++NEP+Q + AG +Q
Sbjct: 272 QNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVAVTSAGEQQMDHLQ 331
Query: 342 VTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
VTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 332 VTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLLQ--QNFDD 378
>gi|395823983|ref|XP_003785253.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Otolemur garnettii]
Length = 413
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 156/436 (35%), Positives = 228/436 (52%), Gaps = 85/436 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTR--------------------------------- 88
E K+ E +FVV+M+TK K +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPAAAAAQQSNPVTTTPVTSSTATTVAQAPTPAPAPA 120
Query: 89 ----STAPTKAPQSSAPTPAAT-----PATAPQTAVPISTEPTPAPTPAPASASVSSVSA 139
S P S P PA+ PA P P++T PTP + S+
Sbjct: 121 STPVSVTPASTTTSPEPAPASATKQEKPAEKP-AETPVATSPTP---------TDSTSGD 170
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
+S S ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL
Sbjct: 171 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 227
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGA 259
GIP E Q V P QAA + T PQ + A + +
Sbjct: 228 GIPGDRESQAVVDPP---QAAGTGT--PQSS-----------AVAAAAATTTATTTTTTS 271
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE 319
+G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NE
Sbjct: 272 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 331
Query: 320 PVQGG-------------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEV 366
PVQ G + + +G M IQVTP+E+EAIERL+A+GF +V++
Sbjct: 332 PVQEAGGQGGGGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQA 390
Query: 367 FFACNKNEELAANYLL 382
+FAC KNE LAAN+LL
Sbjct: 391 YFACEKNENLAANFLL 406
>gi|148225642|ref|NP_001089431.1| uncharacterized protein LOC734481 [Xenopus laevis]
gi|63101219|gb|AAH94481.1| MGC115064 protein [Xenopus laevis]
Length = 419
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 159/439 (36%), Positives = 238/439 (54%), Gaps = 71/439 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ E+TV +K KIE +G D +P A Q LIY GK+L DD L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDIALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAP----------------------QSS 99
E K+ E +FVV+M+TK K G++ S+AP+ A + +
Sbjct: 61 EYKIDEKNFVVVMVTKPK-----GASCSSAPSPATSQPASAASPAPASPPLTYTPIARQN 115
Query: 100 APTPAATPATAPQTAVPI--STEPT----------------PAPTPAPASASVSSVSATS 141
AP P P + P P ++EP+ P T +P+S S + +S
Sbjct: 116 APIPLPVPFSLPTVPTPAAPTSEPSTTTAPEEEKPEEKTVSPPETVSPSSTECSLPTDSS 175
Query: 142 ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GI
Sbjct: 176 RPSIFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGI 232
Query: 202 PEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAG 261
P E Q VA P +++PT P TQP PL + +
Sbjct: 233 PSDREDQAVAEPPE--ALSSTPTLTPPLTQPL--------TQPLPAAAGAAATTTTPSTP 282
Query: 262 A---GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLIN 318
+ LDFL+N PQFQ +R ++Q NP LL +LQ++G++NP L++ I +HQ F++++N
Sbjct: 283 STGGNPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQMLN 342
Query: 319 EPV-------QGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACN 371
+PV GG G + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC
Sbjct: 343 DPVPEGGREGGGGRGVAAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 401
Query: 372 KNEELAANYLLDHMHEFED 390
KNE LAAN+LL F+D
Sbjct: 402 KNENLAANFLLQ--QNFDD 418
>gi|354499742|ref|XP_003511965.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Cricetulus griseus]
Length = 497
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 157/426 (36%), Positives = 225/426 (52%), Gaps = 80/426 (18%)
Query: 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSF 70
G SF +VK +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +F
Sbjct: 95 GISFLGQVK------ALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNF 148
Query: 71 VVIMLTKNK--------------RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVP 116
VV+M+TK K P + STA T Q+ PTPA+ P + P + P
Sbjct: 149 VVVMVTKPKAVTTPVPATTQQSNTPATTAVSSSTA-TVVAQAPTPTPASAPTSTPASTTP 207
Query: 117 ----ISTEPTPA-------PTPAPASASVSSVSA--------TSESGVYGHAASNLVAGN 157
+S+EP PA P PA + V + A +S S ++ A S LV G
Sbjct: 208 ASTTVSSEPAPASAAQPEKPAEKPAQSPVVTSPAPADSTPGDSSRSNLFEDATSALVTGQ 267
Query: 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNG 217
+ E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P
Sbjct: 268 SYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP--- 321
Query: 218 QAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVL 277
P V++ P + + + +AG L+FLRN PQFQ +
Sbjct: 322 --------------PQAVSTGTPQSPAVAAAAATTTATTTSSAGGHPLEFLRNQPQFQQM 367
Query: 278 RAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG------------- 324
R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 368 RQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGG 427
Query: 325 ------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAA 378
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAA
Sbjct: 428 GGGGSGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAA 486
Query: 379 NYLLDH 384
N+LL
Sbjct: 487 NFLLQQ 492
>gi|41056115|ref|NP_956858.1| UV excision repair protein RAD23 homolog B [Danio rerio]
gi|33989500|gb|AAH56578.1| RAD23 homolog B (S. cerevisiae) [Danio rerio]
Length = 382
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 155/397 (39%), Positives = 230/397 (57%), Gaps = 24/397 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ E+TV +K KIE +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATP----ATAPQTAVPI 117
E K+ E +FVV+M+TK K + S++ + + ++A AA + +P
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSAAPVSESPSEEEKK 120
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
+E P+ PAPA+ VSS S + + ++ A S LV G + E + +I+ MG ++RD
Sbjct: 121 PSEEKPSSDPAPATTPVSSGSLPN-ANIFEEATSALVTGQSYENMVTEIMLMG---YERD 176
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
VV ALRA++NNP+RAVEYL +GIP + E V + ++P P P ++S
Sbjct: 177 RVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTPASAPAPAISTGLSS 236
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
A P S A+GA L+FLRN PQF +R ++Q NP LL +LQ++G+
Sbjct: 237 PSSTA----------PAQPSSASGANPLEFLRNQPQFLQMRQIIQQNPSLLPALLQQIGR 286
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS----IQVTPEEREAIERL 353
+NPQL++ I HQ F++++NEPVQ G IQVTP+E+EAIERL
Sbjct: 287 ENPQLLQQISSHQEQFIQMLNEPVQEAGQGGGAGGVAEAGGGHMNYIQVTPQEKEAIERL 346
Query: 354 EAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 347 KALGFPEGLVIQAYFACEKNENLAANFLLQ--QNFDD 381
>gi|126335852|ref|XP_001374067.1| PREDICTED: UV excision repair protein RAD23 homolog B [Monodelphis
domestica]
Length = 411
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 156/425 (36%), Positives = 234/425 (55%), Gaps = 65/425 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKR---------------PTGEGSTRSTAPTKAPQSSAPTPAA- 105
E K+ E +FVV+M+TK K P + S+ Q+ P+PA
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAATSAPSPATTQQSIPATTSTVSSSTAASVAQAPTPSPALA 120
Query: 106 -------------------TPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVY 146
P +AP+ P + +P AP ++S S++ +S S ++
Sbjct: 121 PTPTPTSVTPTPAAAVCEPIPTSAPKEEKP-AEKPVEAPIGVSPTSSDSTLGDSSRSNLF 179
Query: 147 GHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E
Sbjct: 180 EDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRE 236
Query: 207 VQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLD 266
Q V P QAA++ A T++ + +G L+
Sbjct: 237 NQSVVDPP---QAASTGAAQSSAVAAAAATTTATTTT-------------TTTSGGHPLE 280
Query: 267 FLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV----- 321
FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPV
Sbjct: 281 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQESGG 340
Query: 322 ----QGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELA 377
GG G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LA
Sbjct: 341 QGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLA 399
Query: 378 ANYLL 382
AN+LL
Sbjct: 400 ANFLL 404
>gi|224091533|ref|XP_002188381.1| PREDICTED: UV excision repair protein RAD23 homolog B [Taeniopygia
guttata]
Length = 400
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 158/419 (37%), Positives = 227/419 (54%), Gaps = 64/419 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L D+T L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDETALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTG----------EGSTRSTAPTKAPQSSAPTPAATPATAP 111
E K+ E +FVV+M+TK K G GST + A P P P P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAGVTQPSNATSTVGSTTAAPTAVAAPIPVPAPVPAPVPPP 120
Query: 112 QTAVPISTEPTPAPTP----------------APASASVSSVSATSESGVYGHAASNLVA 155
++ EP P TP +P+S S+ TS S ++ A S LV
Sbjct: 121 PAPDAVACEPAPVSTPKEEKPEEKPPEAPAAVSPSSID-STTGDTSRSNLFEDAISALVT 179
Query: 156 GNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPG 215
G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GI PG
Sbjct: 180 GQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGI------------PG 224
Query: 216 NGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQ 275
+ QA P Q P S+G + + + + G L+FLRN PQFQ
Sbjct: 225 DNQAVADPPQPP---------STGASQSSAVAAAVATIPTTTSSLGGHPLEFLRNQPQFQ 275
Query: 276 VLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV----QG-------- 323
+R ++Q NP LL +LQ++G++NPQL++ I +HQ F+ ++NEPV QG
Sbjct: 276 QMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNEPVLESRQGLSGSDDGA 335
Query: 324 GEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
G +GD M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 336 STGGIGDAGNAHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 393
>gi|452824592|gb|EME31594.1| nucleotide excision repair protein [Galdieria sulphuraria]
Length = 432
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 158/432 (36%), Positives = 235/432 (54%), Gaps = 64/432 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDT-TL 60
MK+ KTL+G FD+E +DTV +VK K+ VQG + A LI+ GKVL ++ L
Sbjct: 1 MKLRFKTLQGKEFDLETSLDDTVAEVKRKVAAVQGFE-QDALSCRLIFSGKVLSNENEKL 59
Query: 61 EENKVAENSFVVIMLTKN--KRPTGEGSTRSTAPTK----APQSSAPTPAATPATAPQTA 114
++ V E+SF+V+M K ++ G+ S+++ A K Q + + + TA
Sbjct: 60 QDLNVKEDSFLVVMPPKKTYQKTMGQSSSKTDAQGKEAETTRQKETTSESVQEKQSSTTA 119
Query: 115 VPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
V I+ ATS S +S+ V G+ E ++ +++MG +
Sbjct: 120 VTINNNDR------------DETKATSSSQPTSGTSSDFVIGSQYETTVKNLMEMG---F 164
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ------PVARAPGNGQAANSPTQMPQ 228
+ V RALRAA++NP+RAVEYL++GIPE E + P +P G + TQ
Sbjct: 165 EEQQVKRALRAAFHNPDRAVEYLFNGIPENLERELGQTSLPERTSPQVGHTDRTATQ-EN 223
Query: 229 PTQPAPVTSSGPNAN---PLDLF----PQGLPDVGSGAAGA-GSLDFLRNSPQFQVLRAM 280
T + V+S G A P ++F Q G+ + G+ GSLDFL PQF V+R +
Sbjct: 224 RTGSSGVSSIGNQATDSQPFNMFEPQRSQTAQQGGTESTGSTGSLDFLTRIPQFNVMRRL 283
Query: 281 VQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGE--------------- 325
+QANP++LQPMLQEL + NP L+ LI ++Q +F+RL+NEP + E
Sbjct: 284 IQANPRILQPMLQELAQANPSLLDLIHQNQQEFVRLLNEPTEDSEGLSDEQVQELLNSIS 343
Query: 326 -----GNLGDQLAGLMPQSIQVTPEEREAIERLEA----MGFDRAIVLEVFFACNKNEEL 376
GN G++ +G+ IQV+PEERE IERLE+ MG RA +LE + AC++NEEL
Sbjct: 344 GLSEGGNTGEESSGV--SYIQVSPEEREQIERLESLVGPMGVSRAAILEAWLACDRNEEL 401
Query: 377 AANYLLDHMHEF 388
AANY+L ++ E+
Sbjct: 402 AANYILSNLEEY 413
>gi|114052667|ref|NP_001039775.1| UV excision repair protein RAD23 homolog B [Bos taurus]
gi|109892954|sp|Q29RK4.1|RD23B_BOVIN RecName: Full=UV excision repair protein RAD23 homolog B
gi|88954168|gb|AAI14134.1| RAD23 homolog B (S. cerevisiae) [Bos taurus]
gi|296484403|tpg|DAA26518.1| TPA: UV excision repair protein RAD23 homolog B [Bos taurus]
Length = 408
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 153/424 (36%), Positives = 229/424 (54%), Gaps = 66/424 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNK-----RPTGEGSTRSTAPTKAPQSS----------------- 99
E K+ E +FVV+M+TK K P + S A T S+
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPAPASAPT 120
Query: 100 --------APTPAAT---PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
APT A++ PA+A + P + P P +++ S+ +S S ++
Sbjct: 121 PTPVSVTPAPTTASSEPAPASAAKQEKP-AERPVETPVATTPTSTDSTSGDSSRSNLFED 179
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 236
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGAGSLDF 267
V P P S+G P ++ + ++G L+F
Sbjct: 237 AV-------------------VDPPPAASTGAPQSSVAAAAATTTATTTTTSSGGHPLEF 277
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN 327
LRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ G
Sbjct: 278 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 337
Query: 328 LGDQLAGLMPQS---------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAA 378
G G + IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAA
Sbjct: 338 GGGGGGGSGGIAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAA 397
Query: 379 NYLL 382
N+LL
Sbjct: 398 NFLL 401
>gi|392883134|gb|AFM90399.1| UV excision repair protein RAD23-like B protein [Callorhinchus
milii]
Length = 378
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 151/409 (36%), Positives = 220/409 (53%), Gaps = 51/409 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I VKTL+ SF ++++PE V +K KIET +G D +P A Q LIY GK+L D+T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT---AVPI 117
E K+ E FVV+M+TK K P+ + + A PQ ++ TP PA++P VP
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASSPTATTETVPT 120
Query: 118 ST--EPTPAPTPAPAS-------------ASVSSVSATSESGVYGHAASNLVAGNNLEGA 162
+T E A P S +++ + S ++ A S LV G E
Sbjct: 121 NTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSALVTGQQYETM 180
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
+ +I MG + R+ VV AL+A++NNP+RAVEYL GIP G+ A S
Sbjct: 181 VTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIP--------------GERARS 223
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
PQ T T S A P + + L+FLRN PQF +R ++Q
Sbjct: 224 SVNNPQQTTGTACTGSAQPAAP------------APTSRENPLEFLRNQPQFHQMRQILQ 271
Query: 283 ANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP-QSIQ 341
NP LL +L +LG++NP L++ I +HQ +F++++NEP+Q + AG +Q
Sbjct: 272 QNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVAVTSAGEQQMDHLQ 331
Query: 342 VTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
VTP+E+EAIERL+A+GF +V++ +FAC KN LAAN+LL F+D
Sbjct: 332 VTPQEKEAIERLKALGFPEGLVVQAYFACEKNGNLAANFLLQ--QNFDD 378
>gi|410978805|ref|XP_003995778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Felis catus]
Length = 408
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 153/426 (35%), Positives = 235/426 (55%), Gaps = 66/426 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP--------------TKAPQS------- 98
E K+ E +FVV+M+TK K T +T+ + P + P S
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPT 120
Query: 99 ---SAPTPAAT-------PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
++ TPA+T PA+A + P + +P P +++ S+ +S S ++
Sbjct: 121 PTPASITPASTTASSEPAPASATKQEKP-AEKPAETPVATSPTSTDSTSGDSSRSNLFED 179
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 236
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFL 268
V P PA V++ P ++ + + G L+FL
Sbjct: 237 AVVDTP-----------------PA-VSTGAPQSSVAAAAATTTASTTTASPGGHPLEFL 278
Query: 269 RNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG---- 324
RN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 279 RNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQG 338
Query: 325 ------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAA 378
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAA
Sbjct: 339 GGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAA 397
Query: 379 NYLLDH 384
N+LL
Sbjct: 398 NFLLQQ 403
>gi|431918433|gb|ELK17657.1| UV excision repair protein RAD23 like protein B [Pteropus alecto]
Length = 439
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 160/458 (34%), Positives = 233/458 (50%), Gaps = 99/458 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDT-------------------------------VFDVKMK 30
M++ +KTL+ +F +++ PE+T V +K K
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETHVQQKFSTLSEAPTLCPAPLFGLGTPTNSIIVKALKEK 60
Query: 31 IETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRS- 89
IE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T +
Sbjct: 61 IESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAPATTQ 120
Query: 90 -------------TAPTKAPQSSAPTPAATPATAPQTAVPIST----EPTPA-------P 125
TAP A Q+ PTPA P P + P ST EP PA P
Sbjct: 121 QSNSATTTTVSSSTAPAVA-QTPTPTPALAPTPTPASITPASTTASSEPAPASATKQENP 179
Query: 126 TPAPASASVSSVSATS--------ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
PA V++ ++ S ++ A S LV G + E + +I+ MG ++R+
Sbjct: 180 AEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YERE 236
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V+ ALRA++NNP+RAVEYL GIP E Q V P P S
Sbjct: 237 QVIAALRASFNNPDRAVEYLLMGIPGDRESQAV-------------------VDPPPAAS 277
Query: 238 SG-PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
+G P ++ + ++G L+FLRN PQFQ +R ++Q NP LL +LQ++G
Sbjct: 278 TGAPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIG 337
Query: 297 KQNPQLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQLAGLMPQSIQVTPEE 346
++NPQL++ I +HQ F++++NEPVQ G + + +G M IQVTP+E
Sbjct: 338 RENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTPQE 396
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 397 KEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 434
>gi|392883244|gb|AFM90454.1| UV excision repair protein RAD23-like B isoform 5 [Callorhinchus
milii]
Length = 378
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 152/412 (36%), Positives = 224/412 (54%), Gaps = 57/412 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I VKTL+ SF ++++PE V +K KIET +G D +P A Q LIY GK+L D+T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT---AVPI 117
E K+ E FVV+M+TK K P+ + + A PQ ++ TP P ++P VP
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPVSSPTATTETVPT 120
Query: 118 ST--EPTPAPTPAPASASVSSVSATSE-------------SGVYGHAASNLVAGNNLEGA 162
+T E A P S +S+ ++TS S ++ A S LV G E
Sbjct: 121 NTSNELNTAEKPTEKSDEISTSTSTSPSASTIRTSGGAQGSSLFDVATSALVTGQQYETM 180
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP---EQAEVQPVARAPGNGQA 219
+ +I MG + R+ VV AL+A++NNP+RAVEYL GIP ++ V + G
Sbjct: 181 VTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGERTRSSVNNPQQTTGTAWT 237
Query: 220 ANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRA 279
++ QP PAP + P L+FLRN PQF +R
Sbjct: 238 GSA-----QPAAPAPTSRENP------------------------LEFLRNQPQFHQMRQ 268
Query: 280 MVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP-Q 338
++Q NP LL +L +LG++NP L++ I +HQ +F++++NEP+Q + AG
Sbjct: 269 ILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVAVTSAGEQQMD 328
Query: 339 SIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+QVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 329 HLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLLQ--QNFDD 378
>gi|397479272|ref|XP_003810949.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Pan paniscus]
Length = 403
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 158/425 (37%), Positives = 231/425 (54%), Gaps = 69/425 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + K + G+ EVK +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MSLKKKKVSGSVCRREVKA------LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 54
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAPTKAP-----------QSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP Q+ P PA P
Sbjct: 55 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 114
Query: 109 TAPQTAVPIS----TEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S +EP PA P PA +A+ S+ +S S ++ A
Sbjct: 115 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 174
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 175 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 231
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 232 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 274
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 275 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 334
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 335 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 393
Query: 380 YLLDH 384
+LL
Sbjct: 394 FLLQQ 398
>gi|71896193|ref|NP_001025578.1| RAD23 homolog B [Xenopus (Silurana) tropicalis]
gi|60551813|gb|AAH91020.1| rad23b protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 155/451 (34%), Positives = 229/451 (50%), Gaps = 98/451 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ E+TV +K KIE +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFKIDIDGEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAP----------------------QSS 99
E K+ E +FVV+M+TK K G+ S+ PT A + +
Sbjct: 61 EYKIDEKNFVVVMVTKPK-----GAACSSTPTPAASQPASAAAPAPASPPLTYTPIARQN 115
Query: 100 APTPAATP------------------ATAPQTAVPISTEPTPAPTPAPASASVSSVSATS 141
AP P P TAP+ P +P T +P+S S + +S
Sbjct: 116 APIPLPVPFSIPAVPAPAAPTSEPSTTTAPKEEKPEEKTDSPQETVSPSSTECSLPTDSS 175
Query: 142 ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GI
Sbjct: 176 RPSLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGI 232
Query: 202 PEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAG 261
P E Q VA P + PTQP P + + + G
Sbjct: 233 PSDREGQAVAEPPQTLSST--------PTQPLPAAAGAAATT---------TTPSTPSTG 275
Query: 262 AGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV 321
LDFL+N PQFQ +R ++Q NP LL +LQ++G++NP L++ I +HQ F++++N+PV
Sbjct: 276 GNPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQMLNDPV 335
Query: 322 ----------------------QGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
+ G G++ IQVTP+E+EAIERL+A+GF
Sbjct: 336 PESGGQGGGGGGGGGGGRGIAAEAGSGHMN---------YIQVTPQEKEAIERLKALGFP 386
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+V++ +FAC KNE LAAN+LL F+D
Sbjct: 387 EGLVIQAYFACEKNENLAANFLLQ--QNFDD 415
>gi|194033860|ref|XP_001927901.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sus scrofa]
Length = 408
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 154/430 (35%), Positives = 227/430 (52%), Gaps = 78/430 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT-------------------------------------GE 84
E K+ E +FVV+M+TK K T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPT 120
Query: 85 GSTRSTAPTKAPQSSAPTPA-ATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSES 143
+ S P SS P PA AT P + +P P +++ S+ +S S
Sbjct: 121 PTPASITPASTTASSEPAPASATKQEKP------AEKPAETPVATSPTSTDSTSGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGA 262
E Q V P P S+G P ++ + ++G
Sbjct: 232 DRESQAV-------------------VDPPPAASTGAPQSSVAAAAATTTATTTTTSSGG 272
Query: 263 GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV- 321
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPV
Sbjct: 273 HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQ 332
Query: 322 ---------QGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNK 372
GG G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC K
Sbjct: 333 EAGSQGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 391
Query: 373 NEELAANYLL 382
NE LAAN+LL
Sbjct: 392 NENLAANFLL 401
>gi|355715051|gb|AES05209.1| RAD23-like protein B [Mustela putorius furo]
Length = 406
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 153/425 (36%), Positives = 227/425 (53%), Gaps = 69/425 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGST---------------------------------- 87
E K+ E +FVV+M+TK K T +T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTPAPATTQQSSPATTTTVSSSTAPAVAQAPTPAPALAPTP 120
Query: 88 RSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYG 147
+ T AP +++ PA PA+A Q P + +P P +A+ S+ +S S ++
Sbjct: 121 SPASITPAPTTASSEPA--PASATQPEKP-AEKPAETPVATSPTATDSTSGDSSRSNLFE 177
Query: 148 HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV 207
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E
Sbjct: 178 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRES 234
Query: 208 QPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGS-LD 266
Q V P P S+G + + + A+ G L+
Sbjct: 235 QAVVDTP-------------------PAVSTGAPPSSVAAAAATTTASTTTASPGGHPLE 275
Query: 267 FLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEG 326
FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ G
Sbjct: 276 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 335
Query: 327 NLGDQLAGLMPQS---------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELA 377
G G IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LA
Sbjct: 336 QGGGGGGGSGGIGEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLA 395
Query: 378 ANYLL 382
AN+LL
Sbjct: 396 ANFLL 400
>gi|149641954|ref|XP_001513724.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ornithorhynchus anatinus]
Length = 360
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 221/400 (55%), Gaps = 58/400 (14%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++PE+TV +K KIE +G D +P A Q LIY GK+L DDT + +
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGQDAFPVAGQKLIYAGKILNDDTPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPA--ATPAT--APQTAVPIST 119
K+ E +FVV+M+TK K G TAP P SAP + A P T +P+ P +
Sbjct: 65 KIDEKNFVVVMVTKTKSGLGTSVPPETAPASEPSVSAPAASIVAMPLTPSSPKEERPTAD 124
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PT P P + SV S + G AAS LV G+ E + +I+ MG ++++ V
Sbjct: 125 NPTSLPPPETVTGSVPSSGSI---GREDDAASTLVTGSEYETMLTEIMSMG---YEQEQV 178
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA++NNP RAVEYL GIP G+ + P Q Q + A V
Sbjct: 179 VAALRASFNNPHRAVEYLLMGIP------------GSPEPEGGPIQESQSNEQAAV---- 222
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
G L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++N
Sbjct: 223 -------------------EGGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQEN 263
Query: 300 PQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAI 350
P L++ I HQ F++++NEP ++G G +GD+ + IQVTP+E+EAI
Sbjct: 264 PHLLQQISLHQEQFIQMLNEPSGELGDMSDIEGEIGAIGDEPTQM--SYIQVTPQEKEAI 321
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
ERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 322 ERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 359
>gi|428161911|gb|EKX31145.1| Rad23 nucleotide excision repair protein binds to XPC [Guillardia
theta CCMP2712]
Length = 378
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 155/403 (38%), Positives = 227/403 (56%), Gaps = 54/403 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKT+ G ++E +P +T+ D+K KIE S P + +I+ G+VL+D +
Sbjct: 1 MKVIVKTMAGLQTEMEFEPTNTLADLKTKIEGQMSSLGGPVNK--IIHMGRVLEDGKPIS 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQ-SSAPTPAATP-------ATAPQT 113
E VA+ + VIM++K K P + PQ SS P P+A P P
Sbjct: 59 EYGVADGNTFVIMVSKKK------------PAQEPQPSSEPAPSAAPKPSTPATEAPPAA 106
Query: 114 AVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
++P P TPA ++ S + S TS Y +AS L+ G +LE + QI++MG
Sbjct: 107 PAVQPSQPAPPSTPAQSAPSTAPASTTS----YDASASALLTGESLEATVMQIMEMG--- 159
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ---PT 230
++R+ V++ALRAA+NNP+RAVEYL +GIPE A+ + G G +
Sbjct: 160 FEREQVMKALRAAFNNPDRAVEYLMTGIPEGADTAAPPQGGGQGGGQGAGGSGSGGGVSI 219
Query: 231 QPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQP 290
P ++S L Q SG G G LDFLR+ PQF +LR ++QA PQ LQP
Sbjct: 220 DPEVLSS---------LQSQMQQHSESGGTG-GPLDFLRSDPQFAMLRGIIQARPQFLQP 269
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPV---------QGGEGNLGDQLAGLMPQSIQ 341
+L+++G+Q+P+++R IQE+Q +F+RLINEPV Q EG D+ + IQ
Sbjct: 270 LLEQIGQQHPEVLRAIQENQDEFVRLINEPVDQTQFSQAMQALEGRGEDEEGAV---QIQ 326
Query: 342 VTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+T EE EA+ RLEA+GF+R + LE + AC+KNEE+AANYL ++
Sbjct: 327 LTQEEGEALARLEALGFNRQLALEAYLACDKNEEMAANYLFEN 369
>gi|332222431|ref|XP_003260373.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Nomascus leucogenys]
Length = 388
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 222/400 (55%), Gaps = 63/400 (15%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 64
Query: 85 GSTRSTAPTKAP-----------QSSAPTPAATPATAPQTAVPIS----TEPTPA----- 124
+T+ +AP Q+ P PA P + P + P S +EP PA
Sbjct: 65 ATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPTSTPASITPASVTASSEPAPASATKQ 124
Query: 125 --PTPAPA--------SASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P PA +A+ S+ +S S ++ A S LV G + E + +I+ MG +
Sbjct: 125 EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 181
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A
Sbjct: 182 EREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAA 236
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
++ + ++G L+FLRN PQFQ +R ++Q NP LL +LQ+
Sbjct: 237 AAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQ 284
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQLAGLMPQSIQVTP 344
+G++NPQL++ I +HQ F++++NEPVQ G + + +G M IQVTP
Sbjct: 285 IGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTP 343
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 344 QEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 383
>gi|355753132|gb|EHH57178.1| UV excision repair protein RAD23-like protein B, partial [Macaca
fascicularis]
Length = 387
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 222/400 (55%), Gaps = 63/400 (15%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 4 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 63
Query: 85 GSTRSTAPTK-----------APQSSAPTPAATPATAPQTAVPIS----TEPTPA----- 124
+T+ +AP Q+ P PA P + P + P S +EP PA
Sbjct: 64 ATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASATKQ 123
Query: 125 --PTPAPA--------SASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P PA +A+ S+ +S S ++ A S LV G + E + +I+ MG +
Sbjct: 124 EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 180
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A
Sbjct: 181 EREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAA 235
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
++ + ++G L+FLRN PQFQ +R ++Q NP LL +LQ+
Sbjct: 236 AAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQ 283
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQLAGLMPQSIQVTP 344
+G++NPQL++ I +HQ F++++NEPVQ G + + +G M IQVTP
Sbjct: 284 IGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTP 342
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 343 QEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 382
>gi|347800662|ref|NP_001231642.1| UV excision repair protein RAD23 homolog B isoform 2 [Homo sapiens]
gi|397479270|ref|XP_003810948.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pan paniscus]
gi|426362615|ref|XP_004048453.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Gorilla gorilla gorilla]
gi|221042046|dbj|BAH12700.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 222/400 (55%), Gaps = 63/400 (15%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 64
Query: 85 GSTRSTAPTKAP-----------QSSAPTPAATPATAPQTAVPIS----TEPTPA----- 124
+T+ +AP Q+ P PA P + P + P S +EP PA
Sbjct: 65 ATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASAAKQ 124
Query: 125 --PTPAPA--------SASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P PA +A+ S+ +S S ++ A S LV G + E + +I+ MG +
Sbjct: 125 EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 181
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A
Sbjct: 182 EREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAA 236
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
++ + ++G L+FLRN PQFQ +R ++Q NP LL +LQ+
Sbjct: 237 AAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQ 284
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQLAGLMPQSIQVTP 344
+G++NPQL++ I +HQ F++++NEPVQ G + + +G M IQVTP
Sbjct: 285 IGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTP 343
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 344 QEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 383
>gi|37595434|gb|AAQ94603.1| RAD23 homolog B [Danio rerio]
Length = 380
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 154/397 (38%), Positives = 229/397 (57%), Gaps = 26/397 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ E+TV +K KIE +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATP----ATAPQTAVPI 117
E K+ E +FVV+M+TK K + S++ + + ++A AA + +P
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSAAPVSESPSEEEKK 120
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
+E P+ PAPA+ VSS S + + ++ A S L G + E + +I+ MG ++RD
Sbjct: 121 PSEEKPSSDPAPATTPVSSGSLPN-ANIFEEATSAL--GQSYENMVTEIMLMG---YERD 174
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
VV ALRA++NNP+RAVEYL +GIP + E V + ++P P P ++S
Sbjct: 175 RVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTPASAPAPAISTGLSS 234
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
A P S A+GA L+FLRN PQF +R ++Q NP LL +LQ++G+
Sbjct: 235 PSSTA----------PAQPSSASGANPLEFLRNQPQFLQMRQIIQQNPSLLPALLQQIGR 284
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS----IQVTPEEREAIERL 353
+NPQL++ I HQ F++++NEPVQ G IQVTP+E+EAIERL
Sbjct: 285 ENPQLLQQISSHQEQFIQMLNEPVQEAGQGGGAGGVAEAGGGHMNYIQVTPQEKEAIERL 344
Query: 354 EAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 345 KALGFPEGLVIQAYFACEKNENLAANFLLQ--QNFDD 379
>gi|347658978|ref|NP_001231638.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
gi|343961243|dbj|BAK62211.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
Length = 388
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 222/400 (55%), Gaps = 63/400 (15%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 64
Query: 85 GSTRSTAPTKAP-----------QSSAPTPAATPATAPQTAVPIS----TEPTPA----- 124
+T+ +AP Q+ P PA P + P + P S +EP PA
Sbjct: 65 ATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPTSTPASITPASATASSEPAPASAAKQ 124
Query: 125 --PTPAPA--------SASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P PA +A+ S+ +S S ++ A S LV G + E + +I+ MG +
Sbjct: 125 EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 181
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A
Sbjct: 182 EREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAA 236
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
++ + ++G L+FLRN PQFQ +R ++Q NP LL +LQ+
Sbjct: 237 AAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQ 284
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQLAGLMPQSIQVTP 344
+G++NPQL++ I +HQ F++++NEPVQ G + + +G M IQVTP
Sbjct: 285 IGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTP 343
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 344 QEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 383
>gi|355567554|gb|EHH23895.1| UV excision repair protein RAD23-like protein B, partial [Macaca
mulatta]
Length = 387
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 153/399 (38%), Positives = 221/399 (55%), Gaps = 61/399 (15%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 4 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 63
Query: 85 GSTRSTAPTK-----------APQSSAPTPAATPATAPQTAVPIS----TEPTPA----- 124
+T+ +AP Q+ P PA P + P + P S +EP PA
Sbjct: 64 ATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASATKQ 123
Query: 125 ------PTPAPASASVSSVSATS----ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P P + S ++ +TS S ++ A S LV G + E + +I+ MG +
Sbjct: 124 KKAAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 180
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A
Sbjct: 181 EREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAA 235
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
++ + ++G L+FLRN PQFQ +R ++Q NP LL +LQ+
Sbjct: 236 AAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQ 283
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL--------AGLMPQS-IQVTPE 345
+G++NPQL++ I +HQ F++++NEPVQ G G AG P + IQVTP+
Sbjct: 284 IGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGPMNYIQVTPQ 343
Query: 346 EREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 344 EKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 382
>gi|345777678|ref|XP_003431632.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Canis lupus familiaris]
Length = 385
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 148/400 (37%), Positives = 215/400 (53%), Gaps = 66/400 (16%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAP 64
Query: 85 GSTRST-------------------------APTKAPQSSAPTPAATPATAPQTAVPIST 119
+T+ + APT +P S P PA + AP T+V
Sbjct: 65 ATTQQSNPATTTTVSSSTAPTVVQAPAPPVLAPTPSPASVTPAPATSSEPAP-TSVTQQE 123
Query: 120 EPTPAPTPAPASASVSSVSATS----ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+P P P + S ++ +TS S ++ A S LV G + E + +I+ MG ++
Sbjct: 124 KPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YE 180
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ V+ ALRA++NNP+RAVEYL GIP E Q V P P
Sbjct: 181 REQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDTP-------------------PA 221
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGS-LDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
S+G + + + A+ G L+FLRN PQFQ +R ++Q NP LL +LQ+
Sbjct: 222 VSTGAPPSSVAAAAATTTASTTTASPGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQ 281
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQLAGLMPQSIQVTP 344
+G++NPQL++ I +HQ F++++NEPVQ G + + +G M IQVTP
Sbjct: 282 IGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTP 340
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 341 QEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 380
>gi|221045766|dbj|BAH14560.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 151/400 (37%), Positives = 221/400 (55%), Gaps = 63/400 (15%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 64
Query: 85 GSTRSTAPTKAP-----------QSSAPTPAATPATAPQTAVPIS----TEPTPA----- 124
+T+ +AP Q+ P PA P + P + P S +EP PA
Sbjct: 65 ATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASAAKQ 124
Query: 125 --PTPAPA--------SASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P PA +A+ S+ +S S ++ A S LV G + E + +I+ MG +
Sbjct: 125 EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 181
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A
Sbjct: 182 EREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAA 236
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
++ + ++G L+FLRN PQFQ +R ++Q NP LL +LQ+
Sbjct: 237 AAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQ 284
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQLAGLMPQSIQVTP 344
+G++NPQL++ I +HQ F++++NEPVQ G + + +G M IQVTP
Sbjct: 285 IGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTP 343
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+E+EAIERL+A+GF +V++ +FAC K E LAAN+LL
Sbjct: 344 QEKEAIERLKALGFPEGLVIQAYFACEKRENLAANFLLQQ 383
>gi|327264110|ref|XP_003216859.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Anolis
carolinensis]
Length = 364
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 156/406 (38%), Positives = 227/406 (55%), Gaps = 66/406 (16%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
+ +KTL+ +F + ++PE+TV +K KIE +G D +P + Q LIY GK+L DD ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPEETVRVLKEKIEAEKGKDSFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA------TPATAPQTAVPI 117
K+ E +FVV+M+TKNK +G + P++A +S P P++ T A A
Sbjct: 65 KIDEKNFVVVMVTKNKAGSG---APAPLPSEATSTSEPAPSSGQTQLPTTAAASPPPAAP 121
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGH---AASNLVAGNNLEGAIQQILDMGGGTW 174
S E P P S S VS+ SG G AAS LV G+ E + +I+ MG +
Sbjct: 122 SGEEKPPEEPVTVSPQESIVSSIPPSGSMGREDDAASTLVTGSEYETMLTEIMSMG---Y 178
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQP-TQPA 233
+R+ VV ALRA+YNNP RAVEYL +GI PG+ + P Q QP QP
Sbjct: 179 ERERVVAALRASYNNPHRAVEYLLTGI------------PGSPEPERGPIQESQPQEQPV 226
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQ 293
P G L+FLR+ PQFQ +R ++Q NP LL +LQ
Sbjct: 227 P-------------------------EGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQ 261
Query: 294 ELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTP 344
+LG++NPQL++ I +HQ F++++NEP ++G G +G++ + IQVTP
Sbjct: 262 QLGQENPQLLQQISQHQEQFIQMLNEPLGEMADIADIEGEMGAIGEEAPQM--NYIQVTP 319
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 320 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 363
>gi|387914414|gb|AFK10816.1| UV excision repair protein RAD23-like protein [Callorhinchus milii]
Length = 378
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 150/415 (36%), Positives = 214/415 (51%), Gaps = 63/415 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I VKTL+ SF ++++PE V +K KIET +G D +P A Q LIY GK+L D+T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKA------------PQSSAPTPAATPAT 109
E K+ E FVV+M+TK P S ++ A A A +P AT T
Sbjct: 61 EYKIDEEKFVVVMITK---PKSSPSVQAAATQPATPSTPQPATTTPTVPPASSPTATTET 117
Query: 110 APQTAVPISTEPTPAPTPAPAS-------------ASVSSVSATSESGVYGHAASNLVAG 156
P S E A P S +++ + S ++ A S LV G
Sbjct: 118 VPTNT---SNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSALVTG 174
Query: 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN 216
E + +I MG + R+ VV AL+A++NNP+RAVEYL GIP
Sbjct: 175 QQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIP-------------- 217
Query: 217 GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQV 276
G+ A S PQ T T S A P + + L+FLRN PQF
Sbjct: 218 GERARSSVNNPQQTTGTACTGSAQPAAP------------APTSRENPLEFLRNQPQFHQ 265
Query: 277 LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLM 336
+R ++Q NP LL +L +LG++NP L++ I +HQ +F++++NEP+Q + AG
Sbjct: 266 MRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVAVTSAGEQ 325
Query: 337 P-QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+QVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 326 QMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLLQ--QNFDD 378
>gi|351710326|gb|EHB13245.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 406
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 159/424 (37%), Positives = 233/424 (54%), Gaps = 68/424 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ F ++V D V +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQIFKIDV---DLVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 57
Query: 62 ENKVAENSFVVIMLTKNKRPT----------------------------GEGSTRSTAPT 93
E K+ E +FVV+M+TK K T + APT
Sbjct: 58 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSSPASTTTVSSSSATAVAQAPTPAPALAPT 117
Query: 94 KAPQSSAPTPAAT-----PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
AP S AP PA+A Q P S +P P + +++ ++ +S S ++
Sbjct: 118 SAPASIAPAVTTVSSEPAPASAAQQEKP-SEKPAETPVASSPASTDNTSGDSSRSNLFED 176
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 177 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 233
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFL 268
V P QAA+ T PQ + A ++ A + ++G L+FL
Sbjct: 234 AVVDPP---QAAS--TGAPQSSAVAAAAATTTAA------------TTTTSSGGHPLEFL 276
Query: 269 RNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV------- 321
RN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPV
Sbjct: 277 RNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGSQG 336
Query: 322 ---QGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAA 378
GG G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAA
Sbjct: 337 GGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAA 395
Query: 379 NYLL 382
N+LL
Sbjct: 396 NFLL 399
>gi|149037839|gb|EDL92199.1| RAD23a homolog (S. cerevisiae) [Rattus norvegicus]
Length = 363
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 156/407 (38%), Positives = 226/407 (55%), Gaps = 69/407 (16%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT AP+ S P P A PA+ + P P
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGTPAPPEASPTAAPEPSTPFPPA-PASG-------MSHPPP 116
Query: 124 APTPAPASASVSSVSATSESGVYG-----------HAASNLVAGNNLEGAIQQILDMGGG 172
+ +S+ S+ + + ES AAS LV G+ E + +I+ MG
Sbjct: 117 SNREDKSSSEESATTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG-- 174
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
++R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QP
Sbjct: 175 -YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQP 222
Query: 233 APVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPML 292
A + AAG L+FLR+ PQFQ +R ++Q NP LL +L
Sbjct: 223 A-----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALL 259
Query: 293 QELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVT 343
Q+LG++NPQL++ I HQ F++++NEP V+G G LG++ + IQVT
Sbjct: 260 QQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGALGEEAPQM--NYIQVT 317
Query: 344 PEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
P+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 318 PQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|126323174|ref|XP_001366912.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Monodelphis domestica]
Length = 366
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 150/410 (36%), Positives = 214/410 (52%), Gaps = 82/410 (20%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
+ +KTL+ +F + ++P +TV +K KIE +G D +P + Q LIY GK+L DD + +
Sbjct: 5 VTLKTLQQQTFKIRMEPGETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
K+ E +FVV+M+TK K A + P+ SAP A T + T + P
Sbjct: 65 KIDEKNFVVVMVTKAKA--------GPATSVPPEPSAPASANTLEPSTPTPPAPTIVAMP 116
Query: 124 APTPAPASASVSSVSATSESGV-------------------YGHAASNLVAGNNLEGAIQ 164
P PAP AT ES AAS LV G+ E +
Sbjct: 117 LPPPAPNEEK----KATEESAAGTLPEARPGSLPSSGSSGQEDDAASTLVTGSEYETMLT 172
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPT 224
+I+ MG ++R+ VV ALRA+YNNP RAVEYL GIP G+ + + P
Sbjct: 173 EIMSMG---YERERVVAALRASYNNPHRAVEYLLMGIP------------GSPEPESGPV 217
Query: 225 QMPQ-PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQA 283
Q Q P QPAP G L+FLR+ PQFQ +R ++Q
Sbjct: 218 QESQAPEQPAP------------------------EGGENPLEFLRDQPQFQNMRQVIQQ 253
Query: 284 NPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAG 334
NP LL +LQ+LG++NPQL++ I HQ F++++NEP V+G G +G++
Sbjct: 254 NPSLLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPTGELADMSDVEGEVGAIGEESPQ 313
Query: 335 LMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+ IQVTP+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL
Sbjct: 314 M--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ 361
>gi|410901673|ref|XP_003964320.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Takifugu rubripes]
Length = 367
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 156/399 (39%), Positives = 222/399 (55%), Gaps = 53/399 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ + +E+ PE TV +K KIE +G D +P + Q LIY GK+L+DDT ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSCQKLIYAGKILQDDTPIK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTG---------------EGSTRSTAPTKAPQSSAPTPAAT 106
+ K+ E +FVV+M++K K T GST + AP ++A TP++
Sbjct: 61 DYKIDEKNFVVVMVSKAKPSTAATPPASEPPKPPLQDSGSTSTAAPAATVPATASTPSSA 120
Query: 107 PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYG-HAASNLVAGNNLEGAIQQ 165
P P A S E P+ A+ + A+S G G A+S LV G E + +
Sbjct: 121 PTATPAAAPVPSEEAKEEPS---AAITEPQQPASSSDGSQGLDASSALVTGAEYEAMLTE 177
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
I+ MG ++R+ VV ALRA++NNP RAVEYL +GIP PV Q +N P Q
Sbjct: 178 IISMG---YERERVVAALRASFNNPHRAVEYLLTGIPS----SPV-------QESNPPVQ 223
Query: 226 MPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANP 285
PAP+ + P + P G L FLRN PQF +R +Q NP
Sbjct: 224 A-----PAPLPTESPASPP---------------EGENPLAFLRNQPQFLHMRQAIQQNP 263
Query: 286 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPE 345
LL +LQ+LG++NPQL++ I +HQ F++++NEPV G G IQVTP+
Sbjct: 264 NLLSALLQQLGQENPQLLQQINQHQERFIQMLNEPVGEGGEMGAAGDEGSSVNYIQVTPQ 323
Query: 346 EREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
E+EAIERL+A+GF A+V++ +FAC KNE LAAN+LL+
Sbjct: 324 EKEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQ 362
>gi|402904431|ref|XP_003915049.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Papio anubis]
gi|355703206|gb|EHH29697.1| UV excision repair protein RAD23-like protein A [Macaca mulatta]
gi|383420439|gb|AFH33433.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 363
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 158/400 (39%), Positives = 227/400 (56%), Gaps = 55/400 (13%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--TPATAPQTAVPISTEP 121
++ E +FVV+M+TK K G + +PT AP+SS P A + + PQ A P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPQPAAREDKSP 124
Query: 122 T--PAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ APT +P S S S S+ S AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGR-EEDAASTLVTGSEYETMLTEIMSMG---YERERV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 181 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------ 223
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++N
Sbjct: 224 -----------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQEN 266
Query: 300 PQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAI 350
PQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+EAI
Sbjct: 267 PQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAI 324
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
ERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 325 ERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|344282700|ref|XP_003413111.1| PREDICTED: UV excision repair protein RAD23 homolog A [Loxodonta
africana]
Length = 363
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 158/404 (39%), Positives = 230/404 (56%), Gaps = 63/404 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSA---PTPAAT----PATAPQTAVP 116
++ E +FVV+M+TK K G + T+PT AP+SS P PA+ P TA + P
Sbjct: 65 RIDEKNFVVVMVTKAKAGPGTSAPPETSPTAAPESSTSFPPAPASGMSHPPPTAKEDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S ++ AAS LV G+ E + +I+ MG ++R
Sbjct: 125 -SEESVPTMSPESVSGSVPSSGSSGRE---EDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPT-QPAPV 235
+ VV ALRA+YNNP RAVEYL +GI PG+ + +S Q Q + QPA
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGI------------PGSPEPEHSSVQESQVSEQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQEL 295
+ A G L+FLR+ PQFQ +R ++Q NP LL +LQ+L
Sbjct: 224 ---------------------TEAVGDNPLEFLRDQPQFQNMRQVIQQNPALLPALLQQL 262
Query: 296 GKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEE 346
G++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E
Sbjct: 263 GQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQE 320
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 321 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|297685061|ref|XP_002820118.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pongo abelii]
Length = 388
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 218/398 (54%), Gaps = 63/398 (15%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 64
Query: 85 GSTRSTAPTKAP-----------QSSAPTPAATPATAPQTAVPIST-------------- 119
+T+ +AP Q+ P PA P + P + P S
Sbjct: 65 ATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPASASAAKQ 124
Query: 120 -EPTPAPTPAPASASVSSVSATS----ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
+P P P + S ++ +TS S ++ A S LV G + E + +I+ MG +
Sbjct: 125 EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 181
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A
Sbjct: 182 EREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAA 236
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
++ + ++G L+FLRN PQFQ +R ++Q NP LL +LQ+
Sbjct: 237 AAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQ 284
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQLAGLMPQSIQVTP 344
+G++NPQL++ I +HQ F++++NEPVQ G + + +G M IQVTP
Sbjct: 285 IGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTP 343
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 344 QEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 381
>gi|242023622|ref|XP_002432231.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
gi|212517628|gb|EEB19493.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
Length = 344
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 215/395 (54%), Gaps = 71/395 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +++ TV +K KIE +G D YPA Q LIY GK+L D+T L
Sbjct: 1 MIITLKNLQQQTFTIDIDVNVTVKVLKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRP--TGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
E K+ E F+V+M+TK K P T GS+ ST PTP QT+ S
Sbjct: 60 EYKIDEKKFIVVMVTKPKLPPATHAGSSDST----------PTPGTGDGGEKQTSDTTSN 109
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
EP PAS +V+S ++ +G A S L+ G+ +++ I+DMG + ++ V
Sbjct: 110 EP-------PASENVNSGAS------FGQAESALLMGDEYNQSLRNIMDMG---YPKEQV 153
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
RALRA++NNP+RAVEYL +GIP + T+ + V
Sbjct: 154 ERALRASFNNPDRAVEYLLNGIPSDVD----------------------DTESSDVGGEE 191
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
NPL PD L FLR+ PQFQ +R ++QANPQLL +LQ++G+ N
Sbjct: 192 NTLNPL------TPDTCGNEEDP--LAFLRSQPQFQQMRQVIQANPQLLNAVLQQIGQTN 243
Query: 300 PQLVRLIQEHQADFLRLINE-----------PVQGGEGNLGDQLAGLMPQS-IQVTPEER 347
P L+++I ++Q F+R++NE P GG G + + P S IQVTP+++
Sbjct: 244 PALLQIISQNQDAFVRMLNEPGTGSGATPAPPAAGGNPVSGGAASNVFPPSVIQVTPQDK 303
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
EAIERL+A+GF +VLE +FAC+KNE LAAN+LL
Sbjct: 304 EAIERLKALGFPEHLVLEAYFACDKNENLAANFLL 338
>gi|51230604|ref|NP_001003739.1| UV excision repair protein RAD23 homolog A [Danio rerio]
gi|50925991|gb|AAH79526.1| RAD23 homolog A (S. cerevisiae) [Danio rerio]
gi|182889188|gb|AAI64761.1| Rad23a protein [Danio rerio]
Length = 362
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 158/411 (38%), Positives = 224/411 (54%), Gaps = 72/411 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ + +++ E TV +K KIE +G D +P A Q LIY GK+L+DDT ++
Sbjct: 1 MQITLKTLQQQTIQIDIDDEQTVKALKEKIEAEKGRDSFPVAGQKLIYAGKILQDDTPIK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTK--------APQSSAPTPAATPATAPQT 113
E K+ E +FVV+M++K K P S AP++ + SS+ P P
Sbjct: 61 EYKIDEKNFVVVMVSKTKSP-----GTSAAPSEPSRSMAASSSSSSSSPPPPPPPAPAPA 115
Query: 114 AVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
A+P + E PA S + S T G A+S LV G + + I+ MG
Sbjct: 116 AIPFTDECPRDDPPATVSPASSPDGGTDVVGEGEDASSTLVTGQEYDAMLTNIMSMG--- 172
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAAN-SPTQMPQPTQP 232
++RD VV AL+A+YNNP RAVEYL +GIP PV Q N +P Q+P TQP
Sbjct: 173 YERDKVVAALKASYNNPHRAVEYLLNGIP----TVPV-------QETNPAPAQLPTDTQP 221
Query: 233 APVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPML 292
G L+FLR+ PQFQ +R ++Q NP LL +L
Sbjct: 222 --------------------------TEGENPLEFLRSQPQFQSMRQVIQQNPSLLPALL 255
Query: 293 QELGKQNPQLVRLIQEHQADFLRLINEPVQGGE------------GNLGDQLAGLMPQS- 339
Q+LG++NP+L++ I +HQ F++++N PV GE G +GD+ A P S
Sbjct: 256 QQLGQENPELLQQISQHQELFIQMLNAPVGEGEGELGEGGEFADLGAIGDEAA---PGSF 312
Query: 340 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
IQVT +E+EAIERL+A+GF A+V++ +FAC KNE LAAN+LL+ FED
Sbjct: 313 IQVTQQEKEAIERLKALGFSEALVVQAYFACEKNENLAANFLLN--QNFED 361
>gi|335282758|ref|XP_003123386.2| PREDICTED: UV excision repair protein RAD23 homolog A-like [Sus
scrofa]
Length = 363
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 157/406 (38%), Positives = 225/406 (55%), Gaps = 67/406 (16%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
++ E +FVV+M+TK K G +PT AP+SS P A PA+ +S P+P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPLA-PASG------MSHPPSP 117
Query: 124 A-PTPAPASASVSSVSATSESGVYG---------HAASNLVAGNNLEGAIQQILDMGGGT 173
A +P+ SV + S S SG AAS LV G+ E + +I MG
Sbjct: 118 AREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEITSMG--- 174
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPA 233
++R+ VV ALRA+YNNP RAVEYL +GIP E P +G S PT+
Sbjct: 175 YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVSEQPPTE-- 225
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQ 293
AAG L+FLR+ PQFQ +R ++Q NP LL +LQ
Sbjct: 226 -------------------------AAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQ 260
Query: 294 ELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTP 344
+LG++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP
Sbjct: 261 QLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTP 318
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 319 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|432095937|gb|ELK26853.1| UV excision repair protein RAD23 like protein A [Myotis davidii]
Length = 363
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 155/403 (38%), Positives = 226/403 (56%), Gaps = 61/403 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA-------TPATAPQTAVP 116
++ E +FVV+M+TK K +G + T AP+SS P A TP T + P
Sbjct: 65 RIDEKNFVVVMVTKAKNSSGTSVPPEASSTAAPESSTSFPLAPASGMSHTPPTVREDRSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S ++ AAS LV G+ E + +I+ MG ++R
Sbjct: 125 -SEESVPTASPESVSGSVPSSGSSGRE---EDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GIP E P +G Q +Q + T
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSV--------QESQVSEQT 222
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
S+ P AG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG
Sbjct: 223 STEP-------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLG 263
Query: 297 KQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEER 347
++NPQL++ I HQ F++++NEP ++G G +G++ + IQVTP+E+
Sbjct: 264 QENPQLLQQISRHQEQFIQMLNEPPGELADISDIEGEVGAIGEEAPQM--NYIQVTPQEK 321
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 322 EAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|38492677|pdb|1OQY|A Chain A, Structure Of The Dna Repair Protein Hhr23a
gi|38492966|pdb|1QZE|A Chain A, Hhr23a Protein Structure Based On Residual Dipolar
Coupling Data
Length = 368
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 155/404 (38%), Positives = 223/404 (55%), Gaps = 63/404 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 10 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 69
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 70 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 129
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 130 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 181
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 182 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 228
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQEL 295
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+L
Sbjct: 229 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQL 267
Query: 296 GKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEE 346
G++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E
Sbjct: 268 GQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQE 325
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 326 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 367
>gi|380815238|gb|AFE79493.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
gi|384948564|gb|AFI37887.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 362
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 157/400 (39%), Positives = 225/400 (56%), Gaps = 56/400 (14%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--TPATAPQTAVPISTEP 121
++ E +FVV+M+TK K G + +PT AP+SS P A + + PQ A P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPQPAAREDKSP 124
Query: 122 T--PAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ APT +P S S S S+ S AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGR-EEDAASTLVTGSEYETMLTEIMSMG---YERERV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 181 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------ 223
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
AG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++N
Sbjct: 224 ------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQEN 265
Query: 300 PQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAI 350
PQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+EAI
Sbjct: 266 PQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAI 323
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
ERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 324 ERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|4826964|ref|NP_005044.1| UV excision repair protein RAD23 homolog A isoform 1 [Homo sapiens]
gi|426387413|ref|XP_004060163.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Gorilla gorilla gorilla]
gi|1709983|sp|P54725.1|RD23A_HUMAN RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=hHR23A
gi|498146|dbj|BAA04767.1| HHR23A protein [Homo sapiens]
gi|1905912|gb|AAB51177.1| human RAD23A homolog [Homo sapiens]
gi|15559329|gb|AAH14026.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|23664450|gb|AAN39383.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|60813919|gb|AAX36280.1| RAD23-like A [synthetic construct]
gi|61355208|gb|AAX41114.1| RAD23-like A [synthetic construct]
gi|119604739|gb|EAW84333.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119604740|gb|EAW84334.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|325464287|gb|ADZ15914.1| RAD23 homolog A (S. cerevisiae) [synthetic construct]
gi|410227880|gb|JAA11159.1| RAD23 homolog A [Pan troglodytes]
gi|410257472|gb|JAA16703.1| RAD23 homolog A [Pan troglodytes]
gi|410297508|gb|JAA27354.1| RAD23 homolog A [Pan troglodytes]
gi|410351505|gb|JAA42356.1| RAD23 homolog A [Pan troglodytes]
Length = 363
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 155/404 (38%), Positives = 223/404 (55%), Gaps = 63/404 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQEL 295
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+L
Sbjct: 224 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQL 262
Query: 296 GKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEE 346
G++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E
Sbjct: 263 GQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQE 320
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 321 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|449266094|gb|EMC77210.1| UV excision repair protein RAD23 like protein B, partial [Columba
livia]
Length = 378
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 142/393 (36%), Positives = 207/393 (52%), Gaps = 62/393 (15%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K G
Sbjct: 4 LKEKIESERGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAAAGATQ 63
Query: 87 TRSTAPTKAPQSSAPTPA--------------------------ATPATAPQTAVPISTE 120
+ ++A + P TAP+ P
Sbjct: 64 QSDATSAVSSTTAAAVTVTAPVPTAAPVPDPVPPPPAPDEVACESAPVTAPEEEKPAEKT 123
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P P +P+S S+ TS S ++ A S LV G + E + +I+ MG ++R+ V+
Sbjct: 124 PEPPAAISPSSTE-STTGDTSRSNLFEDAISALVTGQSYENMVTEIISMG---YEREQVI 179
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRA++NNP+RAVEYL GIP G+ QA P+Q + S
Sbjct: 180 AALRASFNNPDRAVEYLLMGIP------------GDNQAVAEPSQAAS----TGASQSST 223
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
A + P + + + G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NP
Sbjct: 224 VATSVATIP-----MTTSSLGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENP 278
Query: 301 QLVRLIQEHQADFLRLINEPV----QGGEG-NLGDQLAGLMP------QSIQVTPEEREA 349
QL++ I +HQ F+ ++NEP QG G + G + G+ IQVTP+E+EA
Sbjct: 279 QLLQQISQHQEHFIHMLNEPAVESRQGLSGSDDGASIGGVAEAGNGHMNYIQVTPQEKEA 338
Query: 350 IERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
IERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 339 IERLKALGFPEGLVIQAYFACEKNENLAANFLL 371
>gi|213512547|ref|NP_001135284.1| UV excision repair protein RAD23 homolog A [Salmo salar]
gi|209156014|gb|ACI34239.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 387
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 154/420 (36%), Positives = 223/420 (53%), Gaps = 65/420 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ E+TV +K KIE +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKTLKEKIENEKGKDGFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIM------LTKNKRPTGEGSTRSTAPTKAPQSSA-------PTPAATPA 108
E K+ E +FVV+M +P+G +T +++ T +A P P
Sbjct: 61 EYKIDEKNFVVVMVAKPKVAPAAAQPSGATTTTTSSTTVPTVPAAALSGSDNPPEGGKPE 120
Query: 109 TAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILD 168
P E P+ T APAS SS + ++ A S LV G + E + +++
Sbjct: 121 DKP-------AEERPSNTSAPASTPTSSSGLLANVNMFEEATSALVTGQSYENMVTEMML 173
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE----QAEVQPVARAPGNGQAANSPT 224
MG ++R+ VV +LRA++NNP+RAVEYL +GIP A PV G G A +
Sbjct: 174 MG---YEREQVVASLRASFNNPDRAVEYLLTGIPAGEEGHASADPVVPPVGGGTPALNTG 230
Query: 225 QMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
M T PA S + S A GA L FL N PQF +R ++Q N
Sbjct: 231 SM---TTPASTGS-----------------LASAATGANPLGFLVNQPQFLQMRQIIQQN 270
Query: 285 PQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP--------------VQGGEGNLGD 330
P LL +LQ++G++NPQL++ I HQ F++++NEP G G G+
Sbjct: 271 PSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPAQEGGQGGGGVGGGGGVGVGVGGE 330
Query: 331 QLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+G+ IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 331 AGSGM--NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQ--QNFDD 386
>gi|431898018|gb|ELK06725.1| UV excision repair protein RAD23 like protein A [Pteropus alecto]
Length = 363
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 157/403 (38%), Positives = 227/403 (56%), Gaps = 61/403 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++ ++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMELDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS---APTPAA----TPATAPQTAVP 116
++ E +FVV+M+TK K G +PT AP+SS +P PA+ +P TA + P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFSPAPASGMSHSPPTAREDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S ++ AAS LV G+ E + +I+ MG ++R
Sbjct: 125 -SEESVPTTSPESVSGSVPSSGSSGRE---EDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA--- 223
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG
Sbjct: 224 --------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLG 263
Query: 297 KQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEER 347
++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+
Sbjct: 264 QENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEK 321
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 322 EAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|56789929|gb|AAH88364.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
Length = 362
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 225/400 (56%), Gaps = 56/400 (14%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE-PT 122
++ E +FVV+M+TK K G + +PT AP+SS P A P + P + E +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA-PTSGMSHPPPAAREDKS 123
Query: 123 PAPTPAPASASVSSVSATSESGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P+ APA++ S + SG G AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 124 PSEESAPATSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 181 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------ 223
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
AG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++N
Sbjct: 224 ------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQEN 265
Query: 300 PQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAI 350
PQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+EAI
Sbjct: 266 PQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAI 323
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
ERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 324 ERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|397487604|ref|XP_003814882.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Pan paniscus]
Length = 363
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 226/400 (56%), Gaps = 55/400 (13%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE-PT 122
++ E +FVV+M+TK K G + +PT AP+SS P A P + P + E +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTPAPPEASPTAAPESSTSFPPA-PTSGMSHPPPAAREDKS 123
Query: 123 PAPTPAPASASVSSVSATSESGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P+ AP ++ S + SG G AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 124 PSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 181 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------ 223
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++N
Sbjct: 224 -----------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQEN 266
Query: 300 PQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAI 350
PQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+EAI
Sbjct: 267 PQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAI 324
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
ERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 325 ERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|341941880|sp|P54726.2|RD23A_MOUSE RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=mHR23A
gi|148679013|gb|EDL10960.1| RAD23a homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|219519380|gb|AAI45373.1| Rad23a protein [Mus musculus]
Length = 363
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 156/405 (38%), Positives = 224/405 (55%), Gaps = 65/405 (16%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 118
Query: 124 APTPAPASASVSSVSATSESGVYG---------HAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S S SG AAS LV G+ E + +I+ MG +
Sbjct: 119 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QPA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQPA- 223
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+
Sbjct: 224 ----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQ 261
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPE 345
LG++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+
Sbjct: 262 LGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQ 319
Query: 346 EREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 320 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|387017982|gb|AFJ51109.1| UV excision repair protein RAD23 homolog B-like [Crotalus
adamanteus]
Length = 409
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 155/420 (36%), Positives = 226/420 (53%), Gaps = 57/420 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ +TV +K KIE +G D +P A Q LIY GK+L DDT L
Sbjct: 1 MQITLKTLQQQTFKIDIDCGETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALN 60
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATPATAP-----QTAV 115
E K+ E +FVV+M+TK K +T + ++ TPAA P P Q +V
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPSPTTAQQSNDTTTTVTSTTPAAVPKLVPTPVPAQVSV 120
Query: 116 -----------------PIS--TEPTPAPTPA---PA---SASVSSVSATSESGVYGHAA 150
P+S E PA P PA +++ SS+ S S ++ A
Sbjct: 121 SAPTASTPAAAAACESAPVSATVEEKPADKPVETPPATSPTSTESSIGDISRSNLFEDAT 180
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV 210
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q +
Sbjct: 181 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQGM 237
Query: 211 ARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRN 270
A P A SP+ A T++ + + G L+FLRN
Sbjct: 238 ADPPQAASTAASPSSAVAAAAAATTTTTT---------------TTTSSTGGHPLEFLRN 282
Query: 271 SPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGD 330
PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ G
Sbjct: 283 QPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQESGQGSGG 342
Query: 331 --------QLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+ IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 343 SGSGGGVVEAGSRHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402
>gi|129277537|ref|NP_001076083.1| UV excision repair protein RAD23 homolog A [Bos taurus]
gi|182676545|sp|A3KMV2.1|RD23A_BOVIN RecName: Full=UV excision repair protein RAD23 homolog A
gi|126717366|gb|AAI33283.1| RAD23A protein [Bos taurus]
gi|296485920|tpg|DAA28035.1| TPA: UV excision repair protein RAD23 homolog A [Bos taurus]
Length = 362
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 224/400 (56%), Gaps = 56/400 (14%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE-PT 122
++ E +FVV+M+TK K G +PT P+SS P+A PA+ P + E +
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFPSA-PASGMSHPPPTAREDKS 123
Query: 123 PAPTPAPASASVSSVSATSESGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P+ AP ++ S + SG G AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 124 PSEESAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEIMSMG---YERERV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QP
Sbjct: 181 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQP------- 222
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
S AG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++N
Sbjct: 223 -----------------STEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQEN 265
Query: 300 PQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAI 350
PQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+EAI
Sbjct: 266 PQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAI 323
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
ERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 324 ERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|417410223|gb|JAA51588.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 380
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 226/400 (56%), Gaps = 55/400 (13%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVP-ISTEPT 122
++ E +FVV+M+TK K G + T AP+SS +P+A PA+ P I + +
Sbjct: 82 RIDEKNFVVVMVTKAKNSPGTSVPPEASSTAAPESSTTSPSA-PASGMSHPPPTIREDKS 140
Query: 123 PAPTPAPASASVSSVSATSESGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P+ P ++ S + SG G AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 141 PSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERV 197
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 198 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------ 240
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++N
Sbjct: 241 -----------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQEN 283
Query: 300 PQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAI 350
PQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+EAI
Sbjct: 284 PQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAI 341
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
ERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 342 ERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 379
>gi|426228902|ref|XP_004008534.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Ovis aries]
Length = 365
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 153/403 (37%), Positives = 221/403 (54%), Gaps = 59/403 (14%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA-------TPATAPQTAVP 116
++ E +FVV+M+TK K G +PT P+SS P+A P TA + P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFPSAPASGMSHPPPTAREDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S ++ AA + V G+ E + +I+ MG ++R
Sbjct: 125 -SEESAPTTSPESVSGSVPSSGSSGREEDVAFAAPSTVTGSEYETMLTEIMSMG---YER 180
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GIP E P +G S QP
Sbjct: 181 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQP---- 225
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
S AG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG
Sbjct: 226 --------------------STEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLG 265
Query: 297 KQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEER 347
++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+
Sbjct: 266 QENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEVGAIGEEAPQM--NYIQVTPQEK 323
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 324 EAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 364
>gi|403302244|ref|XP_003941772.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Saimiri boliviensis boliviensis]
Length = 363
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/404 (38%), Positives = 222/404 (54%), Gaps = 63/404 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAVQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAGEDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 REQVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQEL 295
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+L
Sbjct: 224 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQL 262
Query: 296 GKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEE 346
G++NPQL++ I HQ F++++NEP V+ G +G++ + IQVTP+E
Sbjct: 263 GQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEAEVGAIGEEAPQM--NYIQVTPQE 320
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 321 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|281345182|gb|EFB20766.1| hypothetical protein PANDA_004561 [Ailuropoda melanoleuca]
Length = 386
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 143/401 (35%), Positives = 213/401 (53%), Gaps = 70/401 (17%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T
Sbjct: 4 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAP 63
Query: 85 GSTRSTAP---------------------------------TKAPQSSAPTPAATPATAP 111
+T+ + P T AP +++ PA AT P
Sbjct: 64 ATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPTPSPASVTPAPTTASSEPAPASATQP 123
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+ + +P P +A+ S+ +S S ++ A S LV G + E + +I+ MG
Sbjct: 124 EKP---AEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ 231
++R+ V+ ALRA++NNP+RAVEYL GIP + Q V P
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRDSQAVVDTP----------------- 220
Query: 232 PAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPM 291
PA V++ P ++ + G L+FLRN PQFQ +R ++Q NP LL +
Sbjct: 221 PA-VSTGAPPSSVAAAAATTTASTTTANPGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 279
Query: 292 LQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQLAGLMPQSIQ 341
LQ++G++NPQL++ I +HQ F++++NEPVQ G + + +G M IQ
Sbjct: 280 LQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQ 338
Query: 342 VTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
VTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 339 VTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 379
>gi|147773186|emb|CAN62701.1| hypothetical protein VITISV_007064 [Vitis vinifera]
Length = 349
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/186 (62%), Positives = 141/186 (75%), Gaps = 6/186 (3%)
Query: 146 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQA 205
YG AASN+V+ N+LE IQQI+D+GGG WD++TV RALRAAYNNPERAV+YLYSGIPE A
Sbjct: 165 YGQAASNIVSANHLEQTIQQIMDIGGGNWDKETVTRALRAAYNNPERAVDYLYSGIPEAA 224
Query: 206 EVQ-PVARAPGN----GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAA 260
EV PVA P + G +++ PA S PN++PL++FPQ G+ A
Sbjct: 225 EVAVPVAHFPADQETGGINSSTAAVAGSGAAPAAPASGVPNSSPLNMFPQETLS-GAAAG 283
Query: 261 GAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP 320
G GSL+FLRN+ QFQ LRAMVQANPQ+LQPMLQELGKQNP L+RLIQEH A+FL+LINEP
Sbjct: 284 GLGSLEFLRNNHQFQALRAMVQANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEP 343
Query: 321 VQGGEG 326
++G EG
Sbjct: 344 LEGSEG 349
>gi|158260839|dbj|BAF82597.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/399 (38%), Positives = 222/399 (55%), Gaps = 54/399 (13%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--TPATAPQTAVPISTEP 121
++ E +FVV+M+TK K G + +PT AP+SS P A + + P A P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 124
Query: 122 TPAPTPAPASASVSSVSATSESGVYGH-AASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+ P + SVS +S S G AAS LV G+ E + +I+ MG ++R+ VV
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGRGEDAASTLVTGSEYETMLTEIMSMG---YERERVV 181
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 182 AALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------- 223
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
AG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NP
Sbjct: 224 -----------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENP 266
Query: 301 QLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIE 351
QL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+EAIE
Sbjct: 267 QLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIE 324
Query: 352 RLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
RL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 325 RLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|410950560|ref|XP_003981972.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Felis catus]
Length = 362
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 154/405 (38%), Positives = 222/405 (54%), Gaps = 66/405 (16%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE--- 120
++ E +FVV+M+TK K G +PT AP+SS P A PA+ P + E
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA-PASGMSQPSPTAREDKS 123
Query: 121 ------PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
PT +P S S S E AAS LV G+ E + +I+ MG +
Sbjct: 124 PSEESVPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GI PG+ + + Q Q ++ P
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGI------------PGSPEPEHGSVQESQVSE-QP 222
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
T G N L+FLR+ PQFQ +R ++Q NP LL +LQ+
Sbjct: 223 ATEGGENP----------------------LEFLRDQPQFQNMRQVIQQNPALLPALLQQ 260
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPE 345
LG++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+
Sbjct: 261 LGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQ 318
Query: 346 EREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL FED
Sbjct: 319 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFED 361
>gi|296233062|ref|XP_002807846.1| PREDICTED: UV excision repair protein RAD23 homolog A [Callithrix
jacchus]
Length = 363
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 154/404 (38%), Positives = 222/404 (54%), Gaps = 63/404 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFLPAPTSGMSHPPPAAREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQEL 295
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+L
Sbjct: 224 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQL 262
Query: 296 GKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEE 346
G++NPQL++ I HQ F++++NEP V+ G +G++ + IQVTP+E
Sbjct: 263 GQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEAEVGAIGEEAPQM--NYIQVTPQE 320
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 321 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|392996949|ref|NP_001257291.1| UV excision repair protein RAD23 homolog A isoform 2 [Homo sapiens]
gi|208965418|dbj|BAG72723.1| RAD23 homolog A [synthetic construct]
Length = 362
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 154/404 (38%), Positives = 221/404 (54%), Gaps = 64/404 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQEL 295
AG L+FLR+ PQFQ +R ++Q NP LL +LQ+L
Sbjct: 224 ----------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQL 261
Query: 296 GKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEE 346
G++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E
Sbjct: 262 GQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQE 319
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 320 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|73986456|ref|XP_542038.2| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Canis lupus familiaris]
Length = 362
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 155/403 (38%), Positives = 226/403 (56%), Gaps = 62/403 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSA---PTPAAT----PATAPQTAVP 116
++ E +FVV+M+TK K G +PT AP+SS P PA+ P TA + P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPAPASGMSHPPPTAREDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S ++ AAS LV G+ E + +I+ MG ++R
Sbjct: 125 -SEESVPTTSPESVSGSVPSSGSSGRE---EDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GI PG+ + + Q Q ++ P T
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGI------------PGSPEPEHGSVQESQVSE-QPAT 224
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
G N L+FLR+ PQFQ +R ++Q NP LL +LQ+LG
Sbjct: 225 EGGENP----------------------LEFLRDQPQFQNMRQVIQQNPALLPALLQQLG 262
Query: 297 KQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEER 347
++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+
Sbjct: 263 QENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEK 320
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 321 EAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|62089006|dbj|BAD92950.1| UV excision repair protein RAD23 homolog A variant [Homo sapiens]
Length = 379
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 153/404 (37%), Positives = 219/404 (54%), Gaps = 64/404 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--------TPATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS P A PA +
Sbjct: 82 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 141
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 142 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 193
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 194 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 240
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQEL 295
AG L+FLR+ PQFQ +R ++Q NP LL +LQ+L
Sbjct: 241 ----------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQL 278
Query: 296 GKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEE 346
G++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E
Sbjct: 279 GQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQE 336
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 337 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 378
>gi|348565217|ref|XP_003468400.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Cavia
porcellus]
Length = 362
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 150/407 (36%), Positives = 225/407 (55%), Gaps = 70/407 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P + Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
++ E +FVV+M+TK K G + +PT AP+ SAP T+ P + P+P
Sbjct: 65 RIDEKNFVVVMVTKGKAGQGTLAPPEISPTAAPEPSAPFQL--------TSAPGMSHPSP 116
Query: 124 APTPAPASASVSSVSATSESGVYG-----------HAASNLVAGNNLEGAIQQILDMGGG 172
A + + S+ +A+ ES AAS LV G+ E + +I+ MG
Sbjct: 117 ATRDDKSPSEESAPTASPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG-- 174
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
+DR+ VV ALRA+YNNP RAVEYL +GI PG+ + + Q Q ++
Sbjct: 175 -YDRERVVAALRASYNNPHRAVEYLLTGI------------PGSPEPEHGSIQESQASE- 220
Query: 233 APVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPML 292
P T +G N L+FLR+ PQFQ +R ++Q NP LL +L
Sbjct: 221 QPATEAGENP----------------------LEFLRDQPQFQSMRQVIQQNPALLPALL 258
Query: 293 QELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVT 343
Q+LG++NPQL++ I HQ F++++NEP V+G G +G+ + IQVT
Sbjct: 259 QQLGQENPQLLQQISRHQEQFIQMLNEPPGELADVSDVEGEVGAMGEDAPQM--NYIQVT 316
Query: 344 PEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
P+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 317 PQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|148679012|gb|EDL10959.1| RAD23a homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 379
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 155/405 (38%), Positives = 222/405 (54%), Gaps = 66/405 (16%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 81
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 82 HIDEKNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 135
Query: 124 APTPAPASASVSSVSATSESGVYG---------HAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S S SG AAS LV G+ E + +I+ MG +
Sbjct: 136 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 192
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QPA
Sbjct: 193 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQPA- 240
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
AG L+FLR+ PQFQ +R ++Q NP LL +LQ+
Sbjct: 241 -----------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQ 277
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPE 345
LG++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+
Sbjct: 278 LGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQ 335
Query: 346 EREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 336 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 378
>gi|34447211|ref|NP_033036.2| UV excision repair protein RAD23 homolog A [Mus musculus]
gi|26332489|dbj|BAC29962.1| unnamed protein product [Mus musculus]
gi|187952977|gb|AAI38685.1| Rad23a protein [Mus musculus]
Length = 362
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 155/405 (38%), Positives = 222/405 (54%), Gaps = 66/405 (16%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 118
Query: 124 APTPAPASASVSSVSATSESGVYG---------HAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S S SG AAS LV G+ E + +I+ MG +
Sbjct: 119 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QPA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQPA- 223
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
AG L+FLR+ PQFQ +R ++Q NP LL +LQ+
Sbjct: 224 -----------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQ 260
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPE 345
LG++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+
Sbjct: 261 LGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQ 318
Query: 346 EREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 319 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|351711552|gb|EHB14471.1| UV excision repair protein RAD23-like protein A [Heterocephalus
glaber]
Length = 363
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 153/415 (36%), Positives = 221/415 (53%), Gaps = 85/415 (20%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPT- 122
++ E +FVV+M+TK KA QS+ P +P AP+ + P P
Sbjct: 65 RIDEKNFVVVMVTK---------------AKAGQSTLAPPEVSPTAAPEPSTPFQLSPAS 109
Query: 123 -----PAPTPAPASASVSSVSATSESGVYG------------HAASNLVAGNNLEGAIQQ 165
P T S S S + TS V G AAS LV G+ E + +
Sbjct: 110 GMSHPPPATREDKSPSQESATTTSPESVLGSVPSSGSSGREEDAASTLVTGSEYETMLME 169
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
I+ MG ++R+ V+ ALRA+YNNP RAVEYL +GI PGN + + Q
Sbjct: 170 IMSMG---YERERVIAALRASYNNPHRAVEYLLTGI------------PGNPEPEHGSIQ 214
Query: 226 MPQPT-QPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
Q + QPA + AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 215 ESQVSEQPA-----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 251
Query: 285 PQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGL 335
P LL +LQ+LG++NPQL++ I HQ F++++NEP V+G G +G+ +
Sbjct: 252 PALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEDAPQM 311
Query: 336 MPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
IQVTP+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 312 --NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|1044897|emb|CAA63145.1| MHR23A [Mus musculus]
gi|1587277|prf||2206377A MHR23A gene
Length = 363
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 155/410 (37%), Positives = 222/410 (54%), Gaps = 75/410 (18%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGISAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 118
Query: 124 APTPAPASASVSSVSATSESGVYG---------HAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S S SG AAS LV G+ E + +I+ MG +
Sbjct: 119 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGI-----PEQAEVQPVARAPGNGQAANSPTQMPQP 229
+R+ VV ALRA+YNNP RAVEYL +GI PE VQ RA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQRA---------------- 219
Query: 230 TQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQ 289
QPA + AAG L+FLR+ PQFQ +R ++Q NP LL
Sbjct: 220 EQPA-----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLP 256
Query: 290 PMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSI 340
+LQ+LG++NPQL++ I HQ F++++NEP V+G G +G++ + I
Sbjct: 257 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYI 314
Query: 341 QVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
QVTP+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 315 QVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|213402873|ref|XP_002172209.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
gi|212000256|gb|EEB05916.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
Length = 373
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 39/396 (9%)
Query: 2 MKIFVKTLKGTSFDV-EVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M++ K L+ F V +V P+ TV +VK KI+ QG Y +Q LIY G++L DD T+
Sbjct: 1 MQLTFKNLQQQKFVVPDVDPKTTVLEVKQKIKEQQG---YEVERQKLIYSGRILADDKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
EE + E F+V M+++ P + T K ++ TP T +T+P+T
Sbjct: 58 EEYDIKEKDFIVCMVSR--APASKVKTEQKTEEKKQSTTESTPLNTTSTSPKT------- 108
Query: 121 PTPAPTPAPA-SASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PAP P + + +A + + + G S+LV G I +++MG ++R V
Sbjct: 109 --PAPESVPEQTQPAAVAAAPTAAPIVGD--SSLVLGAQRNAVIDNMVEMG---YERSQV 161
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPT-QPAPVTSS 238
A+RAA+NNP+RAVEYL +GIPE AA + T + AP S+
Sbjct: 162 ELAMRAAFNNPDRAVEYLLNGIPESVRQAQEQEQAAAAAAATAATNATAASGNAAPANST 221
Query: 239 GPNANPLDLFPQGLPDVG----SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
P A P +LF Q SGA+G L FLR PQFQ LR +VQ NPQ+L+ +LQ+
Sbjct: 222 QPAA-PGNLFEQAAAHAQGEEESGASGEDPLGFLRELPQFQQLRQIVQQNPQMLEGILQQ 280
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP---QSIQVTPEEREAIE 351
+G+ NP L ++I ++ FL+L+ E V G G++P I++TPEE ++IE
Sbjct: 281 IGESNPALAQIISQNPEAFLQLLAEGVDG---------EGVLPPGTIQIEITPEENQSIE 331
Query: 352 RLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
RL +GFDR IV++ + AC+KNEELAANYL +H HE
Sbjct: 332 RLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHE 367
>gi|395850797|ref|XP_003797962.1| PREDICTED: UV excision repair protein RAD23 homolog A [Otolemur
garnettii]
Length = 362
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 153/403 (37%), Positives = 227/403 (56%), Gaps = 62/403 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSA---PTPAAT----PATAPQTAVP 116
++ E +FVV+M+TK K G + +PT A ++S P PA+ P A + P
Sbjct: 65 RIDEKNFVVVMVTKAKAGQGTSAPLEASPTAASETSTTFLPAPASGMSHPPPAAREDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S ++ AAS LV G+ E + +I+ MG ++R
Sbjct: 125 -SEESVPTTSPESVSGSVPSSGSSGRE---EDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GI PG+ + +S Q Q ++ P T
Sbjct: 178 EQVVAALRASYNNPHRAVEYLLTGI------------PGSPEPEHSSVQESQVSE-QPAT 224
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
+G N L+FLR+ PQFQ +R ++Q NP LL +LQ+LG
Sbjct: 225 EAGENP----------------------LEFLRDQPQFQNMRQVIQQNPALLPALLQQLG 262
Query: 297 KQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEER 347
++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+
Sbjct: 263 QENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEK 320
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 321 EAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|194374237|dbj|BAG57014.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 150/414 (36%), Positives = 226/414 (54%), Gaps = 63/414 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTATT------------TTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKN 373
G + + +G M IQVTP+E+EAIER+ + +VL ACN +
Sbjct: 341 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERVSLSKTLKKLVLGWAHACNSS 393
>gi|440908044|gb|ELR58113.1| UV excision repair protein RAD23-like protein B, partial [Bos
grunniens mutus]
Length = 386
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 151/404 (37%), Positives = 214/404 (52%), Gaps = 72/404 (17%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T
Sbjct: 4 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVT---- 59
Query: 87 TRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP----------TPAPT-----PAPAS 131
T + A T+ S+A T ++ T P TPAPT PAPAS
Sbjct: 60 TPAPATTQQSNSAATTTVSSSTAPAVTQAPAPAPASAPTPTPVSVTPAPTTASSEPAPAS 119
Query: 132 AS---------VSSVSATS------------ESGVYGHAASNLVAGNNLEGAIQQILDMG 170
A+ V + AT+ S ++ A S LV G + E + +I+ MG
Sbjct: 120 AAKQEKPAEGPVETPVATTPASTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 179
Query: 171 GGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPT 230
++R+ V+ ALRA++NNP+RAVEYL GIP E Q V
Sbjct: 180 ---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV-------------------V 217
Query: 231 QPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQ 289
P P S+G P ++ + ++G L+FLRN PQFQ +R ++Q NP LL
Sbjct: 218 DPPPAASTGAPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLP 277
Query: 290 PMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS---------I 340
+LQ++G++NPQL++ I +HQ F++++NEPVQ G G G + I
Sbjct: 278 ALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHMNYI 337
Query: 341 QVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
QVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 338 QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 381
>gi|296190503|ref|XP_002743221.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Callithrix jacchus]
Length = 388
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 152/402 (37%), Positives = 220/402 (54%), Gaps = 67/402 (16%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAP 64
Query: 85 GSTRSTAPTKAP-----------QSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASAS 133
+T+ +AP Q+ P PA P + P + P S T +P PAPASA+
Sbjct: 65 ATTQQSAPASTTAVTSSTVTTVAQAPTPAPALAPTSTPSSVTPASA--TASPEPAPASAT 122
Query: 134 VSSVSA---------------------TSESGVYGHAASNLVAGNNLEGAIQQILDMGGG 172
A +S S ++ A S LV G + E + +I+ MG
Sbjct: 123 KQEKPAEKPAETPVASSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG-- 180
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ +
Sbjct: 181 -YEREQVIAALRASFNNPDRAVEYLLMGIPGDRENQAVVDPP---QAAS--TGAPQSSAV 234
Query: 233 APVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPML 292
A ++ + ++G L+FLRN PQFQ +R ++Q NP LL +L
Sbjct: 235 AAAAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALL 282
Query: 293 QELGKQNPQLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQLAGLMPQSIQV 342
Q++G++NPQL++ I +HQ F++++NEPVQ G + + +G M IQV
Sbjct: 283 QQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQV 341
Query: 343 TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
TP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 342 TPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 383
>gi|327278100|ref|XP_003223800.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Anolis
carolinensis]
Length = 425
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 150/435 (34%), Positives = 221/435 (50%), Gaps = 71/435 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVGGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP----------------------------- 92
E K+ E +FVV+M+TK K + +T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPAPSPTTTQQSNDTTTTVSSSTIAAAAPKPAPVTAPAP 120
Query: 93 --TKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSAT---SESGVYG 147
P + PTPAA + P+ + P PA+ S S+ S T S S ++
Sbjct: 121 ALVSTPVADPPTPAAVTCEPAPVSSPVEEKVAEKPIETPAATSTSTDSTTGDLSRSNLFE 180
Query: 148 HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV 207
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E
Sbjct: 181 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRES 237
Query: 208 QPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDF 267
Q + P QAA++ A + G P L+F
Sbjct: 238 QGMTDPP---QAASTGASPSAVAAAAAAAVTTTTTTTTTSSTGGHP-----------LEF 283
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG--- 324
LRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 284 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQESGQG 343
Query: 325 -----------------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVF 367
G + + IQVTP+E+EAIERL+A+GF +V++ +
Sbjct: 344 GGGSGGGGGGGGGGGGGGGGVAAEAGSRHMNYIQVTPQEKEAIERLKALGFPEGLVIQAY 403
Query: 368 FACNKNEELAANYLL 382
FAC KNE LAAN+LL
Sbjct: 404 FACEKNENLAANFLL 418
>gi|327493261|gb|AEA86337.1| putative DNA repair protein [Solanum nigrum]
Length = 166
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/166 (73%), Positives = 135/166 (81%), Gaps = 1/166 (0%)
Query: 199 SGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG 258
SGIPE AEV PVA +P + QA N P Q QPAP+ + GPNA+PL+LFPQGLP VGS
Sbjct: 1 SGIPEAAEVPPVAGSPPSVQAGNQPAQPQPAAQPAPIPAGGPNADPLNLFPQGLPSVGSN 60
Query: 259 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLIN 318
AGA +LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNP L+RLIQEHQADFLRLIN
Sbjct: 61 TAGANTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLIN 120
Query: 319 EPVQGGEG-NLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIV 363
EPV+GGEG N+ QLA MPQ+I VTPEEREAIERLE MGFD +V
Sbjct: 121 EPVEGGEGTNVLGQLAAAMPQAISVTPEEREAIERLEQMGFDHDLV 166
>gi|338720420|ref|XP_003364163.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Equus caballus]
Length = 387
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 209/407 (51%), Gaps = 78/407 (19%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT---- 82
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAP 64
Query: 83 ---------------------------------GEGSTRSTAPTKAPQSSAPTPA-ATPA 108
+ S P SS P PA AT
Sbjct: 65 ATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPAPTPASITPASTTASSEPAPASATKQ 124
Query: 109 TAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILD 168
P + +P AP +++ S+ +S S ++ A S LV G + E + +I+
Sbjct: 125 EKP------AEKPAEAPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMS 178
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ 228
MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V
Sbjct: 179 MG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV------------------ 217
Query: 229 PTQPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
P P S+G P ++ + ++G L+FLRN PQFQ +R ++Q NP L
Sbjct: 218 -VDPPPAASTGAPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSL 276
Query: 288 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQLAGLMP 337
L +LQ++G++NPQL++ I +HQ F++++NEPVQ G + + +G M
Sbjct: 277 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM- 335
Query: 338 QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 336 NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 382
>gi|410978807|ref|XP_003995779.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Felis catus]
Length = 387
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 145/401 (36%), Positives = 216/401 (53%), Gaps = 66/401 (16%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT--GE 84
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T
Sbjct: 5 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAP 64
Query: 85 GSTRSTAP--------------TKAPQSSAP----------TPAAT-------PATAPQT 113
+T+ + P + P S TPA+T PA+A +
Sbjct: 65 ATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPTPTPASITPASTTASSEPAPASATKQ 124
Query: 114 AVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
P + +P P +++ S+ +S S ++ A S LV G + E + +I+ MG
Sbjct: 125 EKP-AEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG--- 180
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPA 233
++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P PA
Sbjct: 181 YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDTP-----------------PA 223
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQ 293
V++ P ++ + + G L+FLRN PQFQ +R ++Q NP LL +LQ
Sbjct: 224 -VSTGAPQSSVAAAAATTTASTTTASPGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQ 282
Query: 294 ELGKQNPQLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQLAGLMPQSIQVT 343
++G++NPQL++ I +HQ F++++NEPVQ G + + +G M IQVT
Sbjct: 283 QIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVT 341
Query: 344 PEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
P+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 342 PQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 382
>gi|345482492|ref|XP_001608155.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Nasonia vitripennis]
Length = 358
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 216/398 (54%), Gaps = 59/398 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L +F VE+ TV D+K KIE +G +P+ Q LIY GK+L D+ L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 62 ENKVAENSFVVIMLTK--NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP-QTAVPI- 117
E + E FVV+M++K N+ T + + T TK+ + +APT +TPA AP QT+VP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAPT--STPAPAPVQTSVPAQ 115
Query: 118 ----STEPTPAPTPAPASASVSS-VSATSESGVYGHAASN-----LVAGNNLEGAIQQIL 167
++ P+ P P +A + +AT + A SN L+ G + I+
Sbjct: 116 VTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESALLMGEEYNAMVNNIM 175
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP 227
DMG ++RD V +ALRA++NNP+RAVEYL +GIP Q P A
Sbjct: 176 DMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLFEDPPEEA-------------- 218
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
+ +A P D AG L FLR PQFQ +R ++Q NPQL
Sbjct: 219 ---------AESQDALPAD-------------AGQDPLAFLRTQPQFQQMRQVIQQNPQL 256
Query: 288 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEP-VQGGEGNLGDQLAGLMPQSIQVTPEE 346
L P+LQ++G+ NP L++LI ++Q F+R++NEP GG G P IQ++P++
Sbjct: 257 LNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPVAPGGLGAGAGAGVPGGPGVIQISPQD 316
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+EAIERL+++GF +V++ +FAC KNE LAAN+LL
Sbjct: 317 KEAIERLKSLGFPEDLVVQAYFACEKNENLAANFLLSQ 354
>gi|395516067|ref|XP_003762216.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sarcophilus
harrisii]
Length = 482
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 148/405 (36%), Positives = 216/405 (53%), Gaps = 71/405 (17%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K +
Sbjct: 97 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK----AAA 152
Query: 87 TRSTAPTKAPQSS-----------------APTPA----------------ATPATAP-Q 112
T + +P QS+ APTP+ A A P
Sbjct: 153 TSTPSPATTQQSNPATTTTVSSSSAASVAQAPTPSPALAPTPTPTSVTPTPAAAACEPIP 212
Query: 113 TAVPISTEPTPAPTPAPA----SASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILD 168
T+ P +P P AP ++S S++ +S S ++ A S LV G + E + +I+
Sbjct: 213 TSTPKEEKPAEKPVEAPVGISPTSSDSTLGDSSRSNLFEDATSALVTGQSYENMVTEIMS 272
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ 228
MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V
Sbjct: 273 MG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVV----------------D 313
Query: 229 PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
P Q A ++ +A + +G L+FLRN PQFQ +R ++Q NP LL
Sbjct: 314 PPQAASTGAAQSSAVAAAAATTTATTTTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLL 373
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPV---------QGGEGNLGDQLAGLMPQS 339
+LQ++G++NPQL++ I +HQ F++++NEPV GG G + + +G M
Sbjct: 374 PALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQESGGQGGGGGGSGGIAEAGSGHM-NY 432
Query: 340 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 433 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 477
>gi|344271527|ref|XP_003407589.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Loxodonta africana]
Length = 613
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 155/409 (37%), Positives = 223/409 (54%), Gaps = 79/409 (19%)
Query: 24 VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTG 83
V +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct: 227 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 282
Query: 84 EGSTRSTAPTKAPQSSAP---------------------------------TPAATPAT- 109
+ + AP PQ S P TPA+T A+
Sbjct: 283 --AVTTPAPA-TPQQSNPATTAAVSSSTAAAVAQAPAPAPALAPTSTPTSITPASTTASS 339
Query: 110 --APQTAVPISTEPTPAPTPAPASAS----VSSVSATSESGVYGHAASNLVAGNNLEGAI 163
AP +A +PT PT P +AS S+ +S S ++ A S LV G + E +
Sbjct: 340 EPAPASAT-QQEKPTEKPTETPVAASPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMV 398
Query: 164 QQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSP 223
+I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA++
Sbjct: 399 TEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAASTG 452
Query: 224 TQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQA 283
T PQ + A ++ + ++G L+FLRN PQFQ +R ++Q
Sbjct: 453 T--PQSSAVAAAAATTTATT------------TTTSSGGHPLEFLRNQPQFQQMRQIIQQ 498
Query: 284 NPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQLA 333
NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ G + + +
Sbjct: 499 NPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGS 558
Query: 334 GLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 559 GHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 606
>gi|384493836|gb|EIE84327.1| UV excision repair protein Rad23 [Rhizopus delemar RA 99-880]
Length = 386
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 147/403 (36%), Positives = 219/403 (54%), Gaps = 40/403 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
++I VKTL+ F ++V DT+ VK KI+ QG + AQQ LI+ GK+L DD +E
Sbjct: 4 LQITVKTLQQKQFKLDVDSSDTILSVKEKIQESQG---HAVAQQKLIFSGKILVDDKKVE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSA-PTPAATPATAPQTAVPISTE 120
+ + E F+V+M+ K K S +++ + +S+ PA T +TA +T
Sbjct: 61 DYNITEKDFLVVMVAKAKATPASSSAAASSASTPKESATQEKPAETAPKPAETAAAATTP 120
Query: 121 PTPA-PTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
A P P +++ ++ + T+ + S LV G+ LE ++ ++ MG ++R
Sbjct: 121 SNIASPASEPPASTPAAPTETTTTATPADTFSQLVTGSQLESVVENMMSMG---FERAQC 177
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQA--EVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRA++NNP+RAVEYL++GIPE E+ + P Q N TQ P
Sbjct: 178 ERALRASFNNPDRAVEYLFNGIPEHILNEMNAAQQQPEVQQDTN--TQSP---------- 225
Query: 238 SGPNAN----PLDLFPQGLPDVGSGAAGAG---------SLDFLRNSPQFQVLRAMVQAN 284
+ PNAN ++LF SL RN+P FQ +R +VQ N
Sbjct: 226 TTPNANDANASMNLFAAAQQHAQQQQQQQQQEQNQNLNASLANFRNTPHFQQIRQLVQTN 285
Query: 285 PQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTP 344
P LLQP+LQ +G+ NP+L+R I FL+ E +G EG +G + +IQVTP
Sbjct: 286 PALLQPLLQSIGQSNPELIRAINADPNAFLQAFLEGAEGEEGAMGPETT-----TIQVTP 340
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
EER+AI+RL A+GFD+A+ E +FAC+KNEELAANYL +H ++
Sbjct: 341 EERDAIDRLAALGFDKAVAAEAYFACDKNEELAANYLFEHGYD 383
>gi|383860341|ref|XP_003705649.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Megachile rotundata]
Length = 365
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 214/424 (50%), Gaps = 98/424 (23%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIET +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAEHQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRS--------TAPTKAPQSSAPTPAATPATAPQT 113
E + E F+V+M+TK K TG G T + T + SS P P++ P+
Sbjct: 58 EYNIDEKKFIVVMVTKLK--TGNGHTAAEEDHTNTETKEESSTTSSVPEPSSNPSVQG-A 114
Query: 114 AVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
+ P+ST A S ++T+ G A S L+ G N + I+DMG
Sbjct: 115 SNPVST------------AQEQSAASTATECAGGQAESALLMGENYNTMVNNIMDMG--- 159
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQA-EVQPVARAPGNGQAANSPTQMPQPTQP 232
++R+ V +ALRA++NNP+RAVEYL +GIP Q E P + Q +
Sbjct: 160 YEREQVEQALRASFNNPDRAVEYLVTGIPAQLFEDLPEDQLEAQEQFQDH---------- 209
Query: 233 APVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPML 292
G L FLR PQFQ +R ++Q NPQLL ML
Sbjct: 210 ----------------------------GQHPLAFLRMQPQFQQMREVIQQNPQLLNAML 241
Query: 293 QELGKQNPQLVRLIQEHQADFLRLINEPVQG----------------------GEGNLGD 330
Q++G+ NP L++LI ++Q F+R++NEPV+ G GN G
Sbjct: 242 QQIGQTNPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSASTVAPTSAPGGGNSGP 301
Query: 331 QLAG-------LMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLD 383
+AG + I++TP+++EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 302 -VAGARRGGPFVETSIIEITPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLLS 360
Query: 384 HMHE 387
+H+
Sbjct: 361 QIHD 364
>gi|164665688|gb|ABY66298.1| RAD23-like protein [Brassica napus]
Length = 357
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 162/425 (38%), Positives = 220/425 (51%), Gaps = 111/425 (26%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVK LKG F+++V PED+V DVK IETV G YPAA+Q+LI++GKVLKD+TTL
Sbjct: 1 MKIFVKNLKGARFEIQVSPEDSVGDVKKNIETVMGVTAYPAAEQVLIHKGKVLKDETTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATP-ATAPQTAVPISTE 120
N V+E S + ++ K+P G+ STAP +A AA P +TA +T V
Sbjct: 61 ANNVSEKSVIGVI---KKKPASTGT--STAPASL---TALVHAAHPYSTAAETPV----- 107
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
TP PA +AS + + SES IQQIL+M G W R+ V
Sbjct: 108 -TPT-EPAWDAASNGNYESISESN------------------IQQILEMVRGAWSREAVA 147
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
AL AY++ +A+EY+Y GIP ++E + T Q +PA
Sbjct: 148 YALCLAYDDLNKALEYIYFGIPVKSE--------------DHYTTEEQTQEPAEA----- 188
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
DL SLD LR++P+F+ LR +VQ++P LL L L KQNP
Sbjct: 189 -----DL--------------EWSLDSLRHTPEFEHLRPLVQSDPSLLMDFLLMLKKQNP 229
Query: 301 QLVRLIQEHQADFLRLI----NEPVQGGE-GN-LGD----QLAGLMPQSIQ--------- 341
RLIQ+++ADFLRL+ EP GG+ GN +GD Q+A L P+ +Q
Sbjct: 230 PFFRLIQDNKADFLRLLLEQPQEPNNGGDSGNQVGDSEETQVAQL-PKELQADQTNEPNN 288
Query: 342 -------------------VTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
TPE+ E I+RLEA+GF+R +FACN+N ++AAN+LL
Sbjct: 289 GGGDGGNQVGESKEAKVEVATPEDYELIKRLEALGFERGDAAVAYFACNRNLQVAANHLL 348
Query: 383 DHMHE 387
+ HE
Sbjct: 349 GYKHE 353
>gi|6587822|gb|AAF18513.1|AC010924_26 Contains similarity to gb|Y12014 RAD23 protein isoform II from
Daucus carota and is a member of the Ubiquitin PF|00240
family containing a UBA PF|00627 domain. EST gb|H37284
comes from this gene [Arabidopsis thaliana]
Length = 246
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/278 (44%), Positives = 168/278 (60%), Gaps = 40/278 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE Q D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K T S+A + Q +AP+ + A + P+ +P
Sbjct: 61 ENKVTEEGFLVVMLSKSK-------TASSAGPSSTQLAAPSTTQSIAVPASNSTPVQEQP 113
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T ++S YG AAS LV+G+++E +QQI++MGGG+WD++TV R
Sbjct: 114 T------------------AQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTR 155
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAV+YLYSGIPE + P G G + T P P S GPN
Sbjct: 156 ALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGR-------ELTAPPP--SGGPN 205
Query: 242 ANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVL 277
++PLDLFPQ + S AAG G+L+FLR + Q ++
Sbjct: 206 SSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQVVII 240
>gi|345482490|ref|XP_003424606.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Nasonia vitripennis]
Length = 377
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 148/417 (35%), Positives = 217/417 (52%), Gaps = 78/417 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L +F VE+ TV D+K KIE +G +P+ Q LIY GK+L D+ L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 62 ENKVAENSFVVIMLTK--NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP-QTAVPI- 117
E + E FVV+M++K N+ T + + T TK+ + +APT +TPA AP QT+VP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAPT--STPAPAPVQTSVPAQ 115
Query: 118 ----STEPTPAPTPAPASASVSS-VSATSESGVYGHAASN-----LVAGNNLEGAIQQIL 167
++ P+ P P +A + +AT + A SN L+ G + I+
Sbjct: 116 VTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESALLMGEEYNAMVNNIM 175
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP 227
DMG ++RD V +ALRA++NNP+RAVEYL +GIP Q P A
Sbjct: 176 DMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLFEDPPEEA-------------- 218
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
+ +A P D AG L FLR PQFQ +R ++Q NPQL
Sbjct: 219 ---------AESQDALPAD-------------AGQDPLAFLRTQPQFQQMRQVIQQNPQL 256
Query: 288 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNL--GDQLAGLMP-------- 337
L P+LQ++G+ NP L++LI ++Q F+R++NEPV G ++ P
Sbjct: 257 LNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPVGAASGGSTPASAISATPPVAPGGLGA 316
Query: 338 ----------QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
IQ++P+++EAIERL+++GF +V++ +FAC KNE LAAN+LL
Sbjct: 317 GAGAGVPGGPGVIQISPQDKEAIERLKSLGFPEDLVVQAYFACEKNENLAANFLLSQ 373
>gi|345482494|ref|XP_003424607.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Nasonia vitripennis]
Length = 367
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 146/407 (35%), Positives = 213/407 (52%), Gaps = 68/407 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L +F VE+ TV D+K KIE +G +P+ Q LIY GK+L D+ L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 62 ENKVAENSFVVIMLTK--NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP-QTAVPI- 117
E + E FVV+M++K N+ T + + T TK+ + +APT +TPA AP QT+VP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAPT--STPAPAPVQTSVPAQ 115
Query: 118 ----STEPTPAPTPAPASASVSS-VSATSESGVYGHAASN-----LVAGNNLEGAIQQIL 167
++ P+ P P +A + +AT + A SN L+ G + I+
Sbjct: 116 VTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESALLMGEEYNAMVNNIM 175
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP 227
DMG ++RD V +ALRA++NNP+RAVEYL +GIP Q P A
Sbjct: 176 DMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLFEDPPEEA-------------- 218
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
+ +A P D AG L FLR PQFQ +R ++Q NPQL
Sbjct: 219 ---------AESQDALPAD-------------AGQDPLAFLRTQPQFQQMRQVIQQNPQL 256
Query: 288 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN----------LGDQLAGLMP 337
L P+LQ++G+ NP L++LI ++Q F+R++NEP P
Sbjct: 257 LNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPASAISATPPVAPGGLGAGAGAGVPGGP 316
Query: 338 QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
IQ++P+++EAIERL+++GF +V++ +FAC KNE LAAN+LL
Sbjct: 317 GVIQISPQDKEAIERLKSLGFPEDLVVQAYFACEKNENLAANFLLSQ 363
>gi|47205078|emb|CAF91196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 142/384 (36%), Positives = 201/384 (52%), Gaps = 70/384 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ + +E+ PE TV +K KIE +G D +P + Q LIY GK+L+DDT ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K+ E +FVV+M++K G G+ Q+ PT ++ P
Sbjct: 61 EYKIDERNFVVVMVSK----VGAGN----------QTHRPTVSSRPLAF----------- 95
Query: 122 TPAPTPAPASASVSSVSATSESGVYG-HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+S G G A+S LV G E + +I+ MG ++R+ VV
Sbjct: 96 -----------------CSSSDGSQGLDASSALVTGAEYEAMLTEIISMG---YERERVV 135
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRA++NNP RAVEYL +GIP PV + A +P P PA
Sbjct: 136 AALRASFNNPHRAVEYLLTGIPS----SPVQES-NPPAQAPAPLPTESPASPAE------ 184
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
FP G L FLRN PQF +R +Q NP LL +LQ+LG++NP
Sbjct: 185 -----GCFP--------ACPGENPLAFLRNQPQFLHMRQAIQQNPNLLSALLQQLGQENP 231
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDR 360
QL++ I +HQ F++++NEPV G G IQVTP+E+EAIER +A+GF
Sbjct: 232 QLLQQINQHQERFIQMLNEPVGEGGELGAAGEEGSSVNYIQVTPQEKEAIERFKALGFPE 291
Query: 361 AIVLEVFFACNKNEELAANYLLDH 384
A+V++ +FAC KNE LAAN+LL+
Sbjct: 292 ALVIQAYFACEKNENLAANFLLNQ 315
>gi|83415124|ref|NP_001032776.1| uncharacterized protein LOC562839 [Danio rerio]
gi|79154071|gb|AAI08001.1| Zgc:123349 [Danio rerio]
Length = 404
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 165/431 (38%), Positives = 229/431 (53%), Gaps = 69/431 (16%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I +KTL+ +F V++ E TV +K KIE +G D +PA Q LIY GK+L DD L
Sbjct: 1 MLTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPL 60
Query: 61 EENKVAENSFVVIMLTKNKR----------PTGEGSTRSTAPTKAPQSSAPTPAATPATA 110
+E K+ E +FVV+M+TK K P E T AP +++ P TP A
Sbjct: 61 KEYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQPTTPVAPPNASIVPETTPDPA 120
Query: 111 P----QTAVPI----------------STEPTPAPTPAPA-----------SASVSSVSA 139
P + PI +TEP A TPAPA + + S S
Sbjct: 121 PVEPAASVEPIDPPVTAPPAASEDTVETTEPVSA-TPAPAVEEEIQGQEEQAIAQSEASL 179
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
T E + AAS LV G E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL +
Sbjct: 180 TDELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLT 236
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGA 259
GIP ++E P Q PT + PT PAP + P A + G
Sbjct: 237 GIPAESEQPP--------QEVVRPTPVSNPTPPAPQRAQPPPAA-------AGAESGGAQ 281
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE 319
A A L+FLR+ PQFQ +R ++Q NP LL +LQ+LG+ NPQL++ I +HQ F++++NE
Sbjct: 282 ASANPLEFLRHQPQFQQMRQIIQQNPSLLPALLQQLGRDNPQLLQQITQHQERFVQMLNE 341
Query: 320 PVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
P IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 342 PEAEAPAAPQTNY-------IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 394
Query: 380 YLLDHMHEFED 390
+LL F+D
Sbjct: 395 FLLQ--QNFDD 403
>gi|340716523|ref|XP_003396747.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Bombus terrestris]
Length = 337
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 145/385 (37%), Positives = 206/385 (53%), Gaps = 58/385 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIET +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT----KAPQSSAPTPAATPATAPQTAVPI 117
E + E F+V+M+TK K TG G T T +SS + A P++ P V
Sbjct: 58 EYNIDEKKFIVVMVTKLK--TGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSNP--TVQG 113
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
++ PT +A S ++T+ V G A S L+ G + + I+DMG ++R+
Sbjct: 114 ASNPT-------NTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YERE 163
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 164 QVEQALRASFNNPDRAVEYLLTGIP----AQLFEDLPEDQLEAQEQLQ------------ 207
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
G L FLR PQFQ +R ++Q NPQLL +LQ++G+
Sbjct: 208 ---------------------DHGQHPLAFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQ 246
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMG 357
NP L++LI ++Q F+R++NEP GG G + + IQVTP+++EAIERL+A+G
Sbjct: 247 TNPALLQLISQNQEAFVRMLNEPGDGGLGAGIGAGSDVEASVIQVTPQDKEAIERLKALG 306
Query: 358 FDRAIVLEVFFACNKNEELAANYLL 382
F +V++ +FAC KNE LAAN+LL
Sbjct: 307 FPEHLVVQAYFACEKNENLAANFLL 331
>gi|241713573|ref|XP_002412111.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
gi|215505188|gb|EEC14682.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
Length = 392
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 220/415 (53%), Gaps = 53/415 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ SF VE+ P DTV K KIE +G + YPA Q LIY GK+L DD+ +
Sbjct: 1 MIVTLKTLQQQSFKVEIDPSDTVKVFKEKIEVEKGKE-YPAQYQKLIYAGKILNDDSKMS 59
Query: 62 ENKVAENSFVVIMLTKNKRPT---GEGSTRST--APTKAP--------------QSSAPT 102
E + E FVVIM+TK K T GEG+ AP P + P
Sbjct: 60 EYDIEEKKFVVIMVTKPKCGTPSSGEGAASPVVAAPVDVPGTPAPAGAASGNAGATKGPE 119
Query: 103 PAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGA 162
A +P TA P S A+A+ + + S G+ A S LV G + +
Sbjct: 120 AAGETTRSPTTAQPPSVPAQQTTPAPAAAAAAPTATTESSGGI-ALAESALVMGEDYQRM 178
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
+ QI++MG +D+ V RALRA++NNP+RAVEYL +G E + P Q+
Sbjct: 179 VSQIMEMG---YDKPQVERALRASFNNPDRAVEYLLTGGNEGGNTEGGGAPPAAAQS--- 232
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
P ++ P A PL +GL GSG A L FLR PQFQ +R ++Q
Sbjct: 233 ---------PGREAAAPPGALPLST--EGL---GSGGA-EDPLAFLRFQPQFQQMRQVIQ 277
Query: 283 ANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG----------GEGNLGDQL 332
NPQLL +LQ++G+ NPQL++LI ++Q F+R++NEP G LG
Sbjct: 278 QNPQLLNAVLQQIGQSNPQLLQLISQNQEAFVRMLNEPSPPPGGSGGRTPPAAGALGSG- 336
Query: 333 AGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
A L QVTP+++EAIERL+A+GF +V++ +FAC+KNE LAAN+LL ++
Sbjct: 337 APLEVNYGQVTPQDKEAIERLKALGFPEYLVIQAYFACDKNENLAANFLLSQNYD 391
>gi|115438372|ref|XP_001218049.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188864|gb|EAU30564.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 377
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 154/403 (38%), Positives = 226/403 (56%), Gaps = 41/403 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F+++ +P +TV VK +I ++G +V Q LIY GK+LKD+ T+E
Sbjct: 1 MKLTFKDLKQEKFEIDAEPSETVGQVKERICQLKGWEV---PQLKLIYSGKILKDENTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
KV E F+V M++K K S+ S AP++ P TP+ A+ P +
Sbjct: 58 SYKVEEKGFIVYMVSKPKT-----SSSSAAPSQGPS----TPSRAAASTPAAPPAPAPAT 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ AP + + + S+SG + S L+ G E A+ Q+ MG + RD + R
Sbjct: 109 SAPAQAAPPATPSPAATGASQSGSAFNDPSALMTGRENENAVAQMESMG---FARDDINR 165
Query: 182 ALRAAYNNPERAVEYLYSGIPEQ---AEVQPVARAPGNGQAANSPTQMPQ-PTQPAPVTS 237
A+RAA+ NP+RAVEYL SGIP+ + Q + AA SPT PQ P+ + +T+
Sbjct: 166 AMRAAFFNPDRAVEYLLSGIPDNIQQEQQQQQQQQQAAAAAAASPT--PQAPSGESGLTT 223
Query: 238 SGPNANPLDLFPQ----GLPDVGSGAAGAG----SLDFLRNSPQFQVLRAMVQANPQLLQ 289
+G + P++LF G D G G +LDFLR++P FQ LR +VQ NPQ+L+
Sbjct: 224 AGGD-EPVNLFEAAAQAGTQDTGRAGRSGGEALPNLDFLRHNPHFQQLRQLVQQNPQMLE 282
Query: 290 PMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEER 347
P+LQ+L NPQ+ LI +++ FL+L++E D+ L P I VT EER
Sbjct: 283 PILQQLASGNPQIAALIGQNEEQFLQLLSEE---------DEEGALPPGTHQIHVTEEER 333
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+AIERL +GF R V++ +FAC+KNEELAANYL ++ + ED
Sbjct: 334 DAIERLCRLGFSRDSVIQAYFACDKNEELAANYLFENPDDPED 376
>gi|212274727|ref|NP_001130219.1| uncharacterized protein LOC100191313 [Zea mays]
gi|194688580|gb|ACF78374.1| unknown [Zea mays]
gi|414885363|tpg|DAA61377.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
gi|414885364|tpg|DAA61378.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 225
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/202 (58%), Positives = 145/202 (71%), Gaps = 10/202 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+SF +EV P D V DVK IE++Q YPA QQ+LI+QGKVLKDDTTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTA----VPI 117
EN+V EN+F+VIML +NK GS+ S AP K + AP+ PAT PQT+ P
Sbjct: 61 ENQVVENNFLVIMLRQNK-----GSS-SAAPAKVTANQAPSTQTVPATPPQTSAAPDAPA 114
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
P AP +++ +V+ ++E+ YG A SNLVAG+NLEG I+ IL+MGGGTWDRD
Sbjct: 115 PIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGGTWDRD 174
Query: 178 TVVRALRAAYNNPERAVEYLYS 199
TV+RALRAAYNNPERAVEYLYS
Sbjct: 175 TVLRALRAAYNNPERAVEYLYS 196
>gi|410903534|ref|XP_003965248.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Takifugu rubripes]
Length = 384
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 151/415 (36%), Positives = 218/415 (52%), Gaps = 58/415 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F +E+ E+TV +K +IE +G D +P + LIY G +L D L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKTLKERIEAEKGKDNFPVSGLKLIYAGVILNDVKPLK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP---------- 111
E +++ +FVV+M TK K T A +P +S P AA PA
Sbjct: 61 EYNISDKNFVVVMATKPK-------TAPAATQPSPAASGPCTAAPPAPGACSTVSEVPTQ 113
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSAT-SESGVYGHAASNLVAGNNLEGAIQQILDMG 170
QT + E P T APAS S + + + A SNLV G + E + +I+ MG
Sbjct: 114 QTTKEDNAEEKPPSTAAPASTPEGGGSEVPTNANLIDEAVSNLVTGPSYESMVNEIMLMG 173
Query: 171 GGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPT 230
+DR+ VV ALRA++NNP+RAVEYL +GIP + + GQAA +
Sbjct: 174 ---YDREQVVVALRASFNNPDRAVEYLLTGIPGRDQ----------GQAAGTT------- 213
Query: 231 QPAPVTSSG-PNANPLDLF--PQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
A TS+G A PL P G +GA L FLRN PQFQ +R ++Q N L
Sbjct: 214 --AEATSAGVAPAAPLGGLRAPTGT-GSSTGAERVNPLSFLRNQPQFQQMRQLIQQNASL 270
Query: 288 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEP-----------VQGGEGNLGDQLAGLM 336
L +LQE+G++NP+L++ I HQ F++++NEP + +G
Sbjct: 271 LPALLQEIGRENPELLQEISRHQEQFIQMLNEPNPEPVPGGGGGAAATAAGMAGTASGEN 330
Query: 337 P-QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
P + I VT +E+E+IERL+ +GF +V++ FFAC KNE +AAN+LL F+D
Sbjct: 331 PMRYIHVTAQEKESIERLKELGFPEGLVIQAFFACEKNENMAANFLLQ--QNFDD 383
>gi|355768543|gb|EHH62732.1| UV excision repair protein RAD23-like protein A, partial [Macaca
fascicularis]
Length = 339
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 211/377 (55%), Gaps = 55/377 (14%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G +
Sbjct: 4 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSA 63
Query: 87 TRSTAPTKAPQSSAPTPAA--TPATAPQTAVPISTEPT--PAPTPAPASASVSSVSATSE 142
+PT AP+SS P A + + PQ A P+ APT +P S S S S+ S
Sbjct: 64 PPEASPTAAPESSTSFPPAPTSGMSHPQPAAREDKSPSEESAPTTSPESVSGSVPSSGSS 123
Query: 143 SGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +GIP
Sbjct: 124 GR-EEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 179
Query: 203 EQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA 262
E P +G S QPA + AAG
Sbjct: 180 GSPE-------PEHGSVQESQVS----EQPA-----------------------TEAAGE 205
Query: 263 GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP-- 320
L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++NEP
Sbjct: 206 NPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 265
Query: 321 -------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKN 373
V+G G +G++ + IQVTP+E+EAIERL+A+GF ++V++ +FAC KN
Sbjct: 266 ELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKN 323
Query: 374 EELAANYLLDHMHEFED 390
E LAAN+LL F+D
Sbjct: 324 ENLAANFLLS--QNFDD 338
>gi|354479499|ref|XP_003501947.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Cricetulus griseus]
Length = 375
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 209/380 (55%), Gaps = 61/380 (16%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P A Q LIY GK+L DD ++E + E +FVV+M+TK K +
Sbjct: 40 LKEKIEAEKGRDAFPVAGQKLIYAGKILNDDVPIKEYHIDEKNFVVVMVTKAKAGQSTPA 99
Query: 87 TRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVY 146
+PT AP+SS P P A P + P S E +P+ SA+ +S + S S
Sbjct: 100 PPEVSPTAAPESSTPFPPA-PTSGMSHPPPASREDK---SPSEESATATSPESISGSVPS 155
Query: 147 G-------HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +
Sbjct: 156 SGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLT 212
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGA 259
GIP E P +G S P QPA A
Sbjct: 213 GIPGSPE-------PEHGSVQESQV----PEQPA-----------------------VEA 238
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE 319
AG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++NE
Sbjct: 239 AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNE 298
Query: 320 P---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFAC 370
P V+G G +G++ + IQVTP+E+EAIERL+A+GF ++V++ +FAC
Sbjct: 299 PPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFAC 356
Query: 371 NKNEELAANYLLDHMHEFED 390
KNE LAAN+LL F+D
Sbjct: 357 EKNENLAANFLLS--QNFDD 374
>gi|388499670|gb|AFK37901.1| unknown [Medicago truncatula]
Length = 215
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/219 (57%), Positives = 146/219 (66%), Gaps = 17/219 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKGT F+++V DTV DVK IE QG+ VYPAAQQMLI+QGKVLKD+TTLE
Sbjct: 1 MKINVKTLKGTHFEIQVNLHDTVGDVKKNIEGAQGAAVYPAAQQMLIHQGKVLKDETTLE 60
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPI-ST 119
EN+VAENSF+VIML+KNK +G + + P P SS P P +TP P+ ST
Sbjct: 61 ENQVAENSFIVIMLSKNKVSSSGASAASAAPPAVQPASSLPPPLSTPQ-------PLAST 113
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PA + E SNL+AG+ LE IQQIL+MGGG+WDRDTV
Sbjct: 114 VGQGESNPAQGPVVTPPTTVVPE--------SNLIAGSTLEPTIQQILEMGGGSWDRDTV 165
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQ 218
+RALRAAYNNPERAVEYLYSGIPEQAE VA + GQ
Sbjct: 166 IRALRAAYNNPERAVEYLYSGIPEQAEAPAVAASTNVGQ 204
>gi|348518002|ref|XP_003446521.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Oreochromis niloticus]
Length = 365
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 157/398 (39%), Positives = 225/398 (56%), Gaps = 53/398 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ + +E+ PE TV +K KIE +G D +P + Q LIY GK+L+DDT ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ K+ E +FVV+M++K K + S AP Q S T A P T P A +
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAAAASPSVSEAPKPPVQDSGSTSTAAPTTNPTPAPAPAPAA 120
Query: 122 TPAPTPAPASASVSSVS------ATSESGVYG-HAASNLVAGNNLEGAIQQILDMGGGTW 174
P P+ A S+V+ A+S G G A+S LV G E + +I+ MG +
Sbjct: 121 VPIPS-GEAKEESSAVATEPQQPASSSGGSQGLDASSTLVTGAEYEAMLTEIMSMG---Y 176
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA++NNP RAVEYL +GIP +SP Q P PA
Sbjct: 177 ERERVVAALRASFNNPHRAVEYLLTGIP------------------SSPVQESNP--PAQ 216
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
+SG P +P+ G L FLR PQF +R +Q NP LL +LQ+
Sbjct: 217 APTSGTTEAP------SVPE------GENPLAFLRTQPQFLHMRQAIQQNPALLPALLQQ 264
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPV-QGGE-------GNLGDQLAGLMPQSIQVTPEE 346
LG++NPQL++ I +HQ F++++NEPV +GG+ G G++ A + IQVTP+E
Sbjct: 265 LGRENPQLLQQISQHQELFIQMLNEPVGEGGDAPEVGEMGAAGEEGAPV--NYIQVTPQE 322
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+EAIERL+A+GF A+V++ +FAC KNE LAAN+LL+
Sbjct: 323 KEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQ 360
>gi|340374755|ref|XP_003385903.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 409
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 155/409 (37%), Positives = 220/409 (53%), Gaps = 38/409 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I VKTL+ +F +E++ +V D+K IE QG + +PAA Q LIY GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E++FVV+M++K K + + S+ T ATP P S+
Sbjct: 60 DYSIQESNFVVVMVSKIKPAPAPTPKPQETSSTSSSSTPSTSGATPQ-------PSSSAT 112
Query: 122 TPAPTPAPASASVSSVSATSESG-----------VYGHAASNLVAGNNLEGAIQQILDMG 170
P T AP+ + + + G + A S LV G + E + ++ MG
Sbjct: 113 APTTTSAPSGTTGTESTDGGAGGGQTSSTASSSSEFDQALSTLVTGTDYERTVNDMVGMG 172
Query: 171 GGTWDRDTVVRALRAAYNNPERAVEYLYSGIP-----EQAEVQPVARAPGNGQA--ANSP 223
+ R+ VVRAL+A+YNNP RA+EYL P E+AE QP G Q +SP
Sbjct: 173 ---FMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEAEPQPRGSGAGGQQVPLTSSP 229
Query: 224 TQMPQPTQPAPVT--SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMV 281
Q P +PA + S+ P+A P PQG G G + + L L PQFQ LRA V
Sbjct: 230 PQAPPTQRPAGQSQQSTPPSAAPRP--PQGGLSAGGGQSASNVLQGLSQLPQFQALRAAV 287
Query: 282 QANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG-GEGNLGDQLAGLMPQSI 340
Q NP LL +LQE+G+ NP+L++LI ++Q +F+ L+N+P Q G G + G + SI
Sbjct: 288 QQNPGLLPSLLQEIGQHNPELLQLINQNQQEFVDLLNQPPQPIGSGQ--ELPPGTV--SI 343
Query: 341 QVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 389
QVT EEREAI+RL+A+GF V++ + AC+KNE LAAN LL + E
Sbjct: 344 QVTQEEREAIDRLKALGFPEGEVIQAYLACDKNETLAANLLLSSADDPE 392
>gi|383420441|gb|AFH33434.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 372
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 145/393 (36%), Positives = 216/393 (54%), Gaps = 63/393 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTATT------------TTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIER 352
G + + G M IQVTP+E+EAIER
Sbjct: 341 GGGGGSGGIAEPGNGPM-NYIQVTPQEKEAIER 372
>gi|116283302|gb|AAH03846.1| Rad23a protein [Mus musculus]
Length = 349
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 146/390 (37%), Positives = 214/390 (54%), Gaps = 63/390 (16%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 118
Query: 124 APTPAPASASVSSVSATSESGVYG---------HAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S S SG AAS LV G+ E + +I+ MG +
Sbjct: 119 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QPA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQPA- 223
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+
Sbjct: 224 ----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQ 261
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPE 345
LG++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+
Sbjct: 262 LGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQ 319
Query: 346 EREAIERLEAMGFDRAIVLEVFFACNKNEE 375
E+EAIERL+A+GF ++V++ +FAC K ++
Sbjct: 320 EKEAIERLKALGFPESLVIQAYFACEKKKK 349
>gi|281353038|gb|EFB28622.1| hypothetical protein PANDA_009870 [Ailuropoda melanoleuca]
Length = 339
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 209/380 (55%), Gaps = 61/380 (16%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G
Sbjct: 4 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPGTSV 63
Query: 87 TRSTAPTKAPQSSA---PTPAAT----PATAPQTAVPISTEPTPAPTPAPASASVSSVSA 139
+PT AP+SS P PA+ P TA + P S E P +P S SV S +
Sbjct: 64 PPEASPTAAPESSTSFPPAPASGMSHPPPTAREDKSP-SEESVPTTSPESVSGSVPSSGS 122
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
+ AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +
Sbjct: 123 SGRE---EDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLT 176
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGA 259
GIP E P +G S QPA +
Sbjct: 177 GIPGSPE-------PEHGSVQESQVS----EQPA-----------------------TEG 202
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE 319
AG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++NE
Sbjct: 203 AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNE 262
Query: 320 P---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFAC 370
P V+G G +G++ + IQVTP+E+EAIERL+A+GF ++V++ +FAC
Sbjct: 263 PPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFAC 320
Query: 371 NKNEELAANYLLDHMHEFED 390
KNE LAAN+LL F+D
Sbjct: 321 EKNENLAANFLLS--QNFDD 338
>gi|283945482|ref|NP_001164652.1| nuclear excision repair protein rad23 [Bombyx mori]
gi|217331039|gb|ACK38234.1| nuclear excision repair protein Rad23 [Bombyx mori]
Length = 324
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 203/397 (51%), Gaps = 81/397 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +E+ PE+TV +K+KIE +G D + A Q LIY GK+L DD +
Sbjct: 1 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+VIM+TK K + T ++ P +S + A P T P
Sbjct: 60 SYNIDEKKFIVIMVTKPKVSESQ-PTSTSIPEAGESASTDSGDAKPKTVP---------- 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P P +A V+ T N + LE IQ I+DMG +DR V +
Sbjct: 109 -PEEVVKPTTAETERVTET----------PNTTSDAELEATIQSIMDMG---YDRPQVEQ 154
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRA++NN ERAVEYL +GIPE+ +A S + P
Sbjct: 155 ALRASFNNRERAVEYLITGIPEE--------LLHEQEAEESSDEDP-------------- 192
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
L FLR+ PQFQ +RA++Q NP LL +LQ++G+ NP
Sbjct: 193 -----------------------LAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPA 229
Query: 302 LVRLIQEHQADFLRLINEPVQ------GGEGNLGD-QLAGLMPQS-IQVTPEEREAIERL 353
L+++I +HQ F+R++NEPV + N+ D Q L Q+ IQV+ +++EAIERL
Sbjct: 230 LLQVISQHQEAFVRMLNEPVNPSAAGVASDENVADIQQPQLGSQNVIQVSAQDKEAIERL 289
Query: 354 EAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 290 KALGFPEHMVIQAYFACEKNENLAANFLLS--QNFDD 324
>gi|345565734|gb|EGX48682.1| hypothetical protein AOL_s00079g321 [Arthrobotrys oligospora ATCC
24927]
Length = 408
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 150/416 (36%), Positives = 223/416 (53%), Gaps = 49/416 (11%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
++K+ K LK F +E DT+ VK +I+T +G + + LIY GK+L+D T+
Sbjct: 4 IVKLTFKDLKNERFTIEAGTADTISTVKARIQTEKG---WEPSTVKLIYSGKILQDAQTV 60
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT-----APQTAV 115
+ E F+V M++K K S+ S A P S+ TP TP+ A + V
Sbjct: 61 GSYNIDEKGFIVCMVSKAKTAPKASSSSSAAAPSTPVKSS-TPVQTPSAPIANAASSSTV 119
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
P + TP P P A+ S + +A ++ S+L G+ E AI Q+ +MG +
Sbjct: 120 PAAVPETPTPAPQVAATSQPTTAAFNDP-------SSLAMGSARESAILQMTEMG---FP 169
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPE--QAEVQPV--ARAPGNGQAANSPTQMPQPTQ 231
R V A+RAA+NNP+RAVEYL +GIPE Q E P +RAP + T+
Sbjct: 170 RPDVEAAMRAAFNNPDRAVEYLMTGIPEHLQREAPPAQSSRAPPTQPTTGATAAPAATTE 229
Query: 232 PAPVTSSGPNAN---PLDLF---------PQGLPDVGSGAAGAG-----------SLDFL 268
P ++ A+ P++LF +G P G G A +LDFL
Sbjct: 230 SQPAAAAAAAADVDEPVNLFEAAAAQRSGSRGTPAGGRGGAAVNPLAALAGGGGANLDFL 289
Query: 269 RNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNL 328
RN+PQFQ LR ++Q +PQ+L+P+LQ++G+ NPQL +LI + FLRL+ E + E
Sbjct: 290 RNNPQFQQLRQVIQEHPQMLEPILQQVGQANPQLAQLISTNPEGFLRLLGEGIDEEELAG 349
Query: 329 GDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
G +I VT EER+AIERL +GF+R +V++ +FAC+KNEE+AAN+L ++
Sbjct: 350 AAPGGG---LAIHVTEEERDAIERLCQLGFERDVVIQAYFACDKNEEMAANFLFEN 402
>gi|307211720|gb|EFN87721.1| UV excision repair protein RAD23-like protein A [Harpegnathos
saltator]
Length = 357
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 140/418 (33%), Positives = 203/418 (48%), Gaps = 100/418 (23%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E+ TV D+K KIET +G PA QQ LIY GK+L D+ L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKQKIETQKG---LPAEQQKLIYAGKILADEQPLT 57
Query: 62 ENKVAENSFVVIMLTKNKR---PTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
E + E F+V+M+TK K P R+ K +S+
Sbjct: 58 EYNIDEKKFIVVMVTKPKTSATPKTSDEQRTEGDNKEESTSSSV---------------- 101
Query: 119 TEPTPAPTPAPASASVSSVSATSESGV----YGHAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+P PT S + S+V + V G A S L+ G + ++ I+DMG +
Sbjct: 102 AQPSPNPTVQDTSRAASTVQEQIAAAVPAAGCGQAESALLMGEDYNTMVKNIMDMG---Y 158
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV+ALRA++NNP+RAVEYL +GIP Q P P + +Q P
Sbjct: 159 EREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDPPEDPPEAQEQLQDQSQDP------- 211
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
L FLR PQFQ +R ++Q NPQLL +LQ+
Sbjct: 212 ------------------------------LAFLRMQPQFQQMRQVIQQNPQLLNNLLQQ 241
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQ--GGEGNLGDQLAGLMPQS------------- 339
+G NP L++LI ++Q F+R++NEPV+ G G A ++P
Sbjct: 242 IGSTNPALLQLISQNQEAFVRMLNEPVEPTAGAG------ARVLPAGGVASAAASGGLTG 295
Query: 340 -------------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
IQ+TP++R+AIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 296 SAGTGAAAGAGGLIQITPQDRDAIERLKALGFPEHLVVQAYFACEKNENLAANFLLSQ 353
>gi|301771238|ref|XP_002921030.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ailuropoda melanoleuca]
Length = 375
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 209/380 (55%), Gaps = 62/380 (16%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G
Sbjct: 41 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPGTSV 100
Query: 87 TRSTAPTKAPQSSA---PTPAAT----PATAPQTAVPISTEPTPAPTPAPASASVSSVSA 139
+PT AP+SS P PA+ P TA + P S E P +P S SV S +
Sbjct: 101 PPEASPTAAPESSTSFPPAPASGMSHPPPTAREDKSP-SEESVPTTSPESVSGSVPSSGS 159
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
+ AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +
Sbjct: 160 SGRE---EDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLT 213
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGA 259
GIP E P +G S QPA T G N
Sbjct: 214 GIPGSPE-------PEHGSVQESQVS----EQPA--TEGGENP----------------- 243
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE 319
L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++NE
Sbjct: 244 -----LEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNE 298
Query: 320 P---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFAC 370
P V+G G +G++ + IQVTP+E+EAIERL+A+GF ++V++ +FAC
Sbjct: 299 PPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFAC 356
Query: 371 NKNEELAANYLLDHMHEFED 390
KNE LAAN+LL F+D
Sbjct: 357 EKNENLAANFLLS--QNFDD 374
>gi|340716521|ref|XP_003396746.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Bombus terrestris]
Length = 348
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 145/396 (36%), Positives = 206/396 (52%), Gaps = 69/396 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIET +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT----KAPQSSAPTPAATPATAPQTAVPI 117
E + E F+V+M+TK K TG G T T +SS + A P++ P V
Sbjct: 58 EYNIDEKKFIVVMVTKLK--TGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSNP--TVQG 113
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
++ PT +A S ++T+ V G A S L+ G + + I+DMG ++R+
Sbjct: 114 ASNPT-------NTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YERE 163
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 164 QVEQALRASFNNPDRAVEYLLTGIPAQL----FEDLPEDQLEAQEQLQ------------ 207
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
G L FLR PQFQ +R ++Q NPQLL +LQ++G+
Sbjct: 208 ---------------------DHGQHPLAFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQ 246
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQ-----------GGEGNLGDQLAGLMPQSIQVTPEE 346
NP L++LI ++Q F+R++NEP GG G + + IQVTP++
Sbjct: 247 TNPALLQLISQNQEAFVRMLNEPANVTPPTAPGGISGGLGAGIGAGSDVEASVIQVTPQD 306
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 307 KEAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 342
>gi|332853400|ref|XP_003316200.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pan
troglodytes]
Length = 463
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 205/381 (53%), Gaps = 64/381 (16%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G +
Sbjct: 129 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSA 188
Query: 87 TRSTAPTKAPQSS-----APTPAAT---PATAPQTAVPISTEPTPAPTPAPASASVSSVS 138
+PT AP+SS APT + PA + + PT +P S S S
Sbjct: 189 PPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSS 248
Query: 139 ATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY 198
E AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL
Sbjct: 249 GREED-----AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLL 300
Query: 199 SGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG 258
+GIP E P +G S QPA
Sbjct: 301 TGIPGSPE-------PEHGSVQESQVS----EQPA------------------------T 325
Query: 259 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLIN 318
AG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++N
Sbjct: 326 EAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLN 385
Query: 319 EP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFA 369
EP V+G G +G++ + IQVTP+E+EAIERL+A+GF ++V++ +FA
Sbjct: 386 EPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFA 443
Query: 370 CNKNEELAANYLLDHMHEFED 390
C KNE LAAN+LL F+D
Sbjct: 444 CEKNENLAANFLLS--QNFDD 462
>gi|297703760|ref|XP_002828804.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pongo
abelii]
Length = 485
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 205/381 (53%), Gaps = 64/381 (16%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G +
Sbjct: 151 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSA 210
Query: 87 TRSTAPTKAPQSS-----APTPAAT---PATAPQTAVPISTEPTPAPTPAPASASVSSVS 138
+PT AP+SS APT + PA + + PT +P S S S
Sbjct: 211 PPEASPTAAPESSTSFLPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSS 270
Query: 139 ATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY 198
E AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL
Sbjct: 271 GREED-----AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLL 322
Query: 199 SGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG 258
+GIP E P +G S QPA
Sbjct: 323 TGIPGSPE-------PEHGSVQESQVS----EQPA------------------------T 347
Query: 259 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLIN 318
AG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++N
Sbjct: 348 EAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLN 407
Query: 319 EP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFA 369
EP V+G G +G++ + IQVTP+E+EAIERL+A+GF ++V++ +FA
Sbjct: 408 EPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFA 465
Query: 370 CNKNEELAANYLLDHMHEFED 390
C KNE LAAN+LL F+D
Sbjct: 466 CEKNENLAANFLLS--QNFDD 484
>gi|255080554|ref|XP_002503857.1| predicted protein [Micromonas sp. RCC299]
gi|226519124|gb|ACO65115.1| predicted protein [Micromonas sp. RCC299]
Length = 374
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 155/397 (39%), Positives = 202/397 (50%), Gaps = 41/397 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL F+ + + ++ DV+ K+ Q PA + +LI++GKVL DD TL
Sbjct: 1 MKVAFKTLTNQKFEEDFADDASIGDVRAKLSETQK---IPAPEMVLIHKGKVLTDDATLA 57
Query: 62 ENKVAENSFVVIM---LTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
V E SF+V+M K + A AP + A AT A S
Sbjct: 58 AAGVTEASFIVMMHQKPKAPKPAPPPPVPKPAAAAPAPAPATTPEAPAAATPETPAATPS 117
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
TEP PA TP +S LV G L+ I ++ MG ++RD
Sbjct: 118 TEPAPAGTPTDSS---------------------LVTGAALQETINNMMSMG---FERDA 153
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
VRALRAA+NNP+RAVEYL +GIPE AP A +
Sbjct: 154 CVRALRAAFNNPDRAVEYLLTGIPENLMPPAAPAAPAAAAPAAAAPAAAAAAAATAPGGP 213
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGS---LDFLRNSPQFQVLRAMVQANPQLLQPMLQEL 295
GPN PL+LFP+G G G G LDFLR +PQFQ +RAMVQ NPQ+LQPML EL
Sbjct: 214 GPNTQPLNLFPEGGVPGGGGGGGGEGSGILDFLRENPQFQAIRAMVQGNPQILQPMLAEL 273
Query: 296 GKQNPQLVRLIQEHQADFLRLINEPV-QGGEGNLG-------DQLAGLMPQSIQVTPEER 347
+QNPQL +LI +Q +FLRL+NEP +G NL I+++ +E+
Sbjct: 274 QRQNPQLYQLIAGNQEEFLRLLNEPAPEGALENLAAGLGDGGGFGGDDGEGQIEISEDEK 333
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
AI+RL A+GF+ E FFAC KNEELAAN+L D+
Sbjct: 334 AAIDRLAALGFEFERAAEAFFACGKNEELAANFLFDN 370
>gi|350404552|ref|XP_003487142.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Bombus
impatiens]
Length = 365
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 145/413 (35%), Positives = 206/413 (49%), Gaps = 86/413 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIET +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + E F+V+M+TK K TG G T + + + T + A +P
Sbjct: 58 EYNIDEKKFIVVMVTKLK--TGNGHTTTEEEHTTNTDNKEESSTTSSVA---------QP 106
Query: 122 TPAPTPAPASASVSSVSATSESG-----VYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
+ PT AS ++V SE+ V G A S L+ G + + I+DMG ++R
Sbjct: 107 SSNPTVQGASNPTNTVQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YER 163
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 164 EQVEQALRASFNNPDRAVEYLLTGIPAQL----FEDLPEDQLEAQEQLQ----------- 208
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
G L FLR PQFQ +R ++Q NPQLL +LQ++G
Sbjct: 209 ----------------------DHGQHPLAFLRMQPQFQQMRQVIQQNPQLLNAVLQQIG 246
Query: 297 KQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL----AGLMPQS------------- 339
+ NP L++LI ++Q F+R++NEPV+ G G A + P +
Sbjct: 247 QTNPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSAANVTPPTAPGGISGGLGAGI 306
Query: 340 ----------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
IQVTP+++EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 307 GAGSDVEASVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 359
>gi|440902080|gb|ELR52923.1| UV excision repair protein RAD23-like protein A [Bos grunniens
mutus]
Length = 391
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 152/414 (36%), Positives = 226/414 (54%), Gaps = 55/414 (13%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFV--------------VIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT 109
++ E +FV +++ K G +PT P+SS P+A PA+
Sbjct: 65 RIDEKNFVVVMVTKVGVLMPAPFFWVSQAKTSPGTSVPSEASPTATPESSTSFPSA-PAS 123
Query: 110 APQTAVPISTE-PTPAPTPAPASASVSSVSATSESGVYGH---AASNLVAGNNLEGAIQQ 165
P + E +P+ AP ++ S + SG G AAS LV G+ E + +
Sbjct: 124 GMSHPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTE 183
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
I+ MG ++R+ VV ALRA+YNNP RAVEYL + E + R G G+A P
Sbjct: 184 IMSMG---YERERVVAALRASYNNPHRAVEYLLTVRKELLQEPGGERWGGPGRAERRP-- 238
Query: 226 MPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANP 285
P PA +G A VG+G L+FLR+ PQFQ +R ++Q NP
Sbjct: 239 ---PVSPARAEYAGGAA------------VGTGE---NPLEFLRDQPQFQNMRQVIQQNP 280
Query: 286 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLM 336
LL +LQ+LG++NPQL++ I HQ F++++NEP V+G G +G++ +
Sbjct: 281 ALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEVGAIGEEAPQM- 339
Query: 337 PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
IQVTP+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 340 -NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 390
>gi|380027731|ref|XP_003697572.1| PREDICTED: LOW QUALITY PROTEIN: UV excision repair protein RAD23
homolog B-like [Apis florea]
Length = 364
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 204/411 (49%), Gaps = 83/411 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIET +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGST--RSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
E + E F+V+M+TK K G +T T+ +SS + A P S+
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTDEEHTSADNKEESSTTSLVAQP----------SS 107
Query: 120 EPTPAPTPAPASASVSSVSATSESG-VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
PT +P + A++ +G V G A L+ G + + I+DMG ++R+
Sbjct: 108 NPTVQGASSPGNIIQEQSEASTTAGCVGGQAEXALLMGEDYNTMVNNIVDMG---YEREQ 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 165 VEQALRASFNNPDRAVEYLLTGIPAQL----FEDLPEDQLEAQEQLQ------------- 207
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
G L FLR PQFQ +R ++Q NPQLL +LQ++G+
Sbjct: 208 --------------------DHGQHPLAFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQT 247
Query: 299 NPQLVRLIQEHQADFLRLINEPVQ---------------------------GGEGNLGDQ 331
NP L++LI ++Q F+R++NEPV+ GG G
Sbjct: 248 NPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSASTVTPATAPGGISGGLGAGIGT 307
Query: 332 LAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+ + IQVTP+++EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 308 GSDVETSVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 358
>gi|156362373|ref|XP_001625753.1| predicted protein [Nematostella vectensis]
gi|156212600|gb|EDO33653.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 210/400 (52%), Gaps = 58/400 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I KTL+ +F VE+ ++TV +K KIE +G D YP LIY GK+L DD L+
Sbjct: 1 MIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + E SFVVIM+ K K + T PQ++ +P+ ++ Q +P
Sbjct: 61 EYNIDEKSFVVIMVAKPKP-APAAVAPAPVTTTIPQAATASPSTQASSTAQEDSKPEAKP 119
Query: 122 TPAPTPAPASASVSSVSATSES-----GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
A + + +A+ ++ +A++ + A S L G EG + +I++MG ++R
Sbjct: 120 DEAKSTSTETAASATTTASTPAASTPRSYIEEAESALATGTEYEGLVTEIMNMG---FER 176
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
D VVRAL+A++NNP+RAVEYL +GIP+ P R G
Sbjct: 177 DQVVRALQASFNNPDRAVEYLTTGIPD----LPSERVGDQGG------------------ 214
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
Q + + A G SL+FLR PQF +R MVQ NP +L +LQ +G
Sbjct: 215 -------------QDEGEEETAAEGVSSLEFLRTQPQFITMRRMVQQNPGVLPQLLQSMG 261
Query: 297 KQNPQLVRLIQEHQADFLRLINE------PVQGGEGNLGDQLA---GLMP---QSIQVTP 344
+ NP L++LI HQ +F+R++NE P GGEG G Q G P IQ+TP
Sbjct: 262 QSNPSLLQLISSHQDEFIRMLNEPDDGPQPAAGGEG--GQQSVPGEGAPPPGVSYIQITP 319
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
E+EAIERL+ +GF +V++ +FAC KNE LAAN+LL+
Sbjct: 320 VEKEAIERLKQLGFPEPLVIQAYFACEKNENLAANFLLNQ 359
>gi|328788815|ref|XP_623093.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Apis mellifera]
Length = 364
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 204/411 (49%), Gaps = 83/411 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIE +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIEIQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGST--RSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
E + E F+V+M+TK K G +T T+ +SS + A P S+
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTDEEHTSADNKEESSTTSLVAQP----------SS 107
Query: 120 EPTPAPTPAPASASVSSVSATSESG-VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
PT +P + A++ +G V G A S L+ G + + I+DMG ++R+
Sbjct: 108 NPTVQGASSPGNIIQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YEREQ 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 165 VEQALRASFNNPDRAVEYLLTGIPAQL----FEDLPEDQLEAQEQLQ------------- 207
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
G L FLR PQFQ +R ++Q NPQLL +LQ++G+
Sbjct: 208 --------------------DHGQHPLAFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQT 247
Query: 299 NPQLVRLIQEHQADFLRLINEPVQ---------------------------GGEGNLGDQ 331
NP L++LI ++Q F+R++NEPV+ GG G
Sbjct: 248 NPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSASTVTPATAPGGISGGLGAGIGT 307
Query: 332 LAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+ + IQVTP+++EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 308 GSDVETSVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 358
>gi|340716519|ref|XP_003396745.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Bombus terrestris]
Length = 364
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 147/412 (35%), Positives = 209/412 (50%), Gaps = 85/412 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIET +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT----KAPQSSAPTPAATPATAPQTAVPI 117
E + E F+V+M+TK K TG G T T +SS + A P++ P V
Sbjct: 58 EYNIDEKKFIVVMVTKLK--TGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSNP--TVQG 113
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
++ PT +A S ++T+ V G A S L+ G + + I+DMG ++R+
Sbjct: 114 ASNPT-------NTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YERE 163
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 164 QVEQALRASFNNPDRAVEYLLTGIPAQL----FEDLPEDQLEAQEQLQ------------ 207
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
G L FLR PQFQ +R ++Q NPQLL +LQ++G+
Sbjct: 208 ---------------------DHGQHPLAFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQ 246
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL----AGLMPQS-------------- 339
NP L++LI ++Q F+R++NEPV+ G G A + P +
Sbjct: 247 TNPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSAANVTPPTAPGGISGGLGAGIG 306
Query: 340 ---------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
IQVTP+++EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 307 AGSDVEASVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 358
>gi|307189318|gb|EFN73749.1| UV excision repair protein RAD23-like protein B [Camponotus
floridanus]
Length = 363
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 140/418 (33%), Positives = 207/418 (49%), Gaps = 94/418 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E+ TV D+K KIET +G +PA Q LIY GK+L D+ L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLT 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + E F+V+M+TK K G+T P++S A + ++ +T+P
Sbjct: 58 EYNIDEKKFIVVMVTKPKA----GAT--------PKTSEEQRAESTDNKEESTSSATTQP 105
Query: 122 TPAPTPAPASASVSSVSATSE--SGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ PT + S+V S + G A S L+ G + + I+DMG ++R+ V
Sbjct: 106 SSNPTVQETLQAASNVQEQSAVPTPAAGQAESALLMGEDYNTMVNNIMDMG---YEREQV 162
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V+ALRA++NNP+RAVEYL +GIP Q P P + +Q P
Sbjct: 163 VQALRASFNNPDRAVEYLLTGIPAQLFEDPPEDPPEAQEQLQDQSQDP------------ 210
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
L FLR PQFQ +R ++Q NPQLL +LQ++G N
Sbjct: 211 -------------------------LAFLRMQPQFQQMRQVIQQNPQLLNNLLQQIGSTN 245
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS-------------------- 339
P L++LI ++Q F+R++NEPV+ G G A ++P S
Sbjct: 246 PALLQLISQNQEAFVRMLNEPVEPATG-AG---ARVLPTSGGGVASATAAAAAGGAVNGG 301
Query: 340 -------------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
IQ+TP++R+AIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 302 AGTGAAAGVGSGTIQITPQDRDAIERLKALGFPEHLVVQAYFACEKNENLAANFLLSQ 359
>gi|194332576|ref|NP_001123777.1| uncharacterized protein LOC100170527 [Xenopus (Silurana)
tropicalis]
gi|156914684|gb|AAI52591.1| Zgc:123349 [Danio rerio]
gi|189441745|gb|AAI67540.1| LOC100170527 protein [Xenopus (Silurana) tropicalis]
Length = 404
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 160/433 (36%), Positives = 222/433 (51%), Gaps = 73/433 (16%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I +KTL+ +F V++ E TV +K KIE +G D +PA Q LIY GK+L DD L
Sbjct: 1 MLTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPL 60
Query: 61 EENKVAENSFVVIMLTKNKR----------PTGEGSTRSTAPTKAPQSSAPTPAATPATA 110
+E K+ E +FVV+M+TK K P E T AP +++ P TP A
Sbjct: 61 KEYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQPTTPVAPPNASIVPETTPDPA 120
Query: 111 P----QTAVPI----------------STEPTPAPTPAPA-----------SASVSSVSA 139
P + PI +TEP A TPAP + + S S
Sbjct: 121 PVEPAASVEPIDPPITAPPAASEDTVETTEPVSA-TPAPVVEEEIQGQEEQAIAQSEASL 179
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
T E + AAS LV G E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL +
Sbjct: 180 TDELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLT 236
Query: 200 GIPEQAEVQP--VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGS 257
GIP ++E P V R + Q QP A S G
Sbjct: 237 GIPAESEQPPQEVVRPTPSSNPTPPAPQRAQPPPAAAGAES-----------------GG 279
Query: 258 GAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLI 317
A A L+FLR+ PQFQ +R ++Q NP LL + Q+LG+ NPQL++ I +HQ F++++
Sbjct: 280 AQASANPLEFLRHQPQFQQMRQIIQQNPSLLPALQQQLGRDNPQLLQQITQHQERFVQML 339
Query: 318 NEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELA 377
NEP IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LA
Sbjct: 340 NEPEAEAPAAPQTNY-------IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLA 392
Query: 378 ANYLLDHMHEFED 390
AN+LL F+D
Sbjct: 393 ANFLLQ--QNFDD 403
>gi|340716525|ref|XP_003396748.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
4 [Bombus terrestris]
Length = 357
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 205/407 (50%), Gaps = 82/407 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F VE+ P TV D+K KIET +G +PA Q LIY GK+L DD L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT----KAPQSSAPTPAATPATAPQTAVPI 117
E + E F+V+M+TK K TG G T T +SS + A P++ P V
Sbjct: 58 EYNIDEKKFIVVMVTKLK--TGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSNP--TVQG 113
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
++ PT +A S ++T+ V G A S L+ G + + I+DMG ++R+
Sbjct: 114 ASNPT-------NTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YERE 163
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V +ALRA++NNP+RAVEYL +GIP Q P + A Q
Sbjct: 164 QVEQALRASFNNPDRAVEYLLTGIPAQL----FEDLPEDQLEAQEQLQ------------ 207
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
G L FLR PQFQ +R ++Q NPQLL +LQ++G+
Sbjct: 208 ---------------------DHGQHPLAFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQ 246
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGN----------------------LGDQLAGL 335
NP L++LI ++Q F+R++NEP GG + +
Sbjct: 247 TNPALLQLISQNQEAFVRMLNEP--GGRTTPVSAANVTPPTAPGGISGGLGAGIGAGSDV 304
Query: 336 MPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
IQVTP+++EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 305 EASVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 351
>gi|413926352|gb|AFW66284.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 296
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/263 (45%), Positives = 156/263 (59%), Gaps = 48/263 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+P DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 62 ENKVAENSFVVIML----------TKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP 111
ENKV E+ F+V+ML T + + + +TR P +APQ AP P P T
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQHSNTPATRQAPPLEAPQ-QAPQPPVAPIT-- 117
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+++P P AP + + +AASNL++G N++ I Q+++MGG
Sbjct: 118 ------TSQPEGLPAQAPNT--------------HDNAASNLLSGRNVDTIINQLMEMGG 157
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ 231
G+WD+D V RALRAAYNNPERAVEYLYSGIP AE+ P GQ AN+ T
Sbjct: 158 GSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIA----VPIGGQGANT-------TD 206
Query: 232 PAPVTSSG----PNANPLDLFPQ 250
AP +G PN PLDLFPQ
Sbjct: 207 RAPTGEAGLSGIPNTAPLDLFPQ 229
>gi|145351567|ref|XP_001420144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580377|gb|ABO98437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 361
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 211/396 (53%), Gaps = 56/396 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL FD+E+ V VK ++ QG Y +L+++G VLKD+ T+
Sbjct: 1 MKVQFKTLTNQKFDLELDEGADVATVKAEVRKAQG---YGDEAIVLVHKGSVLKDEATIA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
V E SFVV+M + P+++A AA T + E
Sbjct: 58 SAGVTEESFVVVM------------------VQKPKAAAKPKAAAAKPPTPTPAAAAPEA 99
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A +S + +A + S LV+G LE A+ QI+ MG ++R+ V+
Sbjct: 100 AAPVAAATPESSAPTPAAATAVPAAAGGDSGLVSGAELEAAVTQIMTMG---FEREQVMN 156
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+NNP+RAVEYL +GIPE ++ +P P AP S+
Sbjct: 157 AMRAAFNNPDRAVEYLLTGIPETSQ---------------APPAAAAPAADAPDASAALG 201
Query: 242 ANPLDLFPQGLPDVGSGAAGAGS-LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
N L+LFP+G+PD+ +G G LDFLR++PQFQ +RAMVQ P +LQPML EL +QNP
Sbjct: 202 GNALNLFPEGIPDMAGDRSGDGQMLDFLRDNPQFQAIRAMVQGQPHILQPMLAELQRQNP 261
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLGDQLA-----GLMPQ--------SIQVTPEER 347
QL LI +Q +FL L+NEP+ N+ D +A G+ P+ I+++ EER
Sbjct: 262 QLYHLINNNQEEFLALLNEPL---PENIRDLMAEGFGDGVAPELQGDDDGAQIELSQEER 318
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLD 383
E I+RL +GF I +E + AC+KNE+LAANYLL+
Sbjct: 319 ETIDRLAGLGFPLEICVEAYLACDKNEQLAANYLLN 354
>gi|194213056|ref|XP_001914974.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Equus
caballus]
Length = 393
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 147/379 (38%), Positives = 205/379 (54%), Gaps = 59/379 (15%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K
Sbjct: 58 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPSSAV 117
Query: 87 TRSTAPTKAPQSSA---PTPA---ATPATAPQTAVPISTEPTPAPTPAPASASVSSVSAT 140
T+PT AP+SS P PA + P AP+ S E PA +P S SV S ++
Sbjct: 118 PPETSPTAAPESSTTFPPAPASGMSHPPPAPREDKSPSEESIPATSPESVSGSVPSSGSS 177
Query: 141 SESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200
AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +G
Sbjct: 178 GRE---EDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTG 231
Query: 201 IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAA 260
IP E P +G S QPT + AA
Sbjct: 232 IPGSPE-------PEHGSVQESQVSE-QPT--------------------------TEAA 257
Query: 261 GAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP 320
G L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++ L + I HQ F++++NEP
Sbjct: 258 GENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQETLSLPQQISRHQEQFIQMLNEP 317
Query: 321 ---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACN 371
V+G G +G++ + IQVTP+E+EAIERL+A+GF +V++ +FAC
Sbjct: 318 PGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 375
Query: 372 KNEELAANYLLDHMHEFED 390
KNE LAAN+LL F+D
Sbjct: 376 KNENLAANFLLS--QNFDD 392
>gi|395513058|ref|XP_003760747.1| PREDICTED: UV excision repair protein RAD23 homolog A [Sarcophilus
harrisii]
Length = 404
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 212/389 (54%), Gaps = 76/389 (19%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE +G D +P + Q LIY GK+L DD + + K+ E +FVV+M+TK K
Sbjct: 66 LKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDYKIDEKNFVVVMVTKAK-----AG 120
Query: 87 TRSTAPTKAPQSSAPTPAAT-------PATAPQTAVPI-----STEPTPAPTPA---PAS 131
++AP+ + SAP A T P A+P+ S E PA PA P
Sbjct: 121 LATSAPS---EPSAPAAANTLEPSTPTPPAPAIVAMPLPPPAPSEEQKPAEEPAAGTPPE 177
Query: 132 ASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPE 191
A S+ ++ SG AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP
Sbjct: 178 AGSGSLPSSGSSGQEDDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPH 234
Query: 192 RAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ-PTQPAPVTSSGPNANPLDLFPQ 250
RAVEYL +GIP G+ + + P Q Q P QPAP
Sbjct: 235 RAVEYLLTGIP------------GSPEPESGPVQESQAPEQPAP---------------- 266
Query: 251 GLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQ 310
G L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ
Sbjct: 267 --------EGGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQ 318
Query: 311 ADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRA 361
F++++NEP V+G G +G++ + IQVTP+E+EAIERL+A+GF +
Sbjct: 319 EQFIQMLNEPTGELADMSDVEGEVGAIGEESPQM--NYIQVTPQEKEAIERLKALGFPES 376
Query: 362 IVLEVFFACNKNEELAANYLLDHMHEFED 390
+V++ +FAC KNE LAAN+LL F+D
Sbjct: 377 LVIQAYFACEKNENLAANFLLS--QNFDD 403
>gi|19113023|ref|NP_596231.1| UV excision repair protein rhp23 [Schizosaccharomyces pombe 972h-]
gi|21542214|sp|O74803.1|RHP23_SCHPO RecName: Full=UV excision repair protein rhp23; AltName: Full=RAD23
homolog
gi|5805388|gb|AAD51975.1|AF174293_1 Rhp23 [Schizosaccharomyces pombe]
gi|3687502|emb|CAA21170.1| Rad23 homolog Rhp23 [Schizosaccharomyces pombe]
Length = 368
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 213/396 (53%), Gaps = 37/396 (9%)
Query: 2 MKIFVKTLKGTSFDV-EVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M + K L+ F + +V + + ++K KI+T Q Y +Q LIY G++L DD T+
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQN---YEVERQKLIYSGRILADDKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + E F+V M++ RP ST +A + AP A P AP + V ST
Sbjct: 58 GEYNIKEQDFIVCMVS---RPKTSTSTPKSAASPAPNPPASVPEKK-VEAPSSTVAESTS 113
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T T A A+ S +ATSE+ + A+ L G A++ +++MG ++R V
Sbjct: 114 TTQ--TVAAAAPSNPDTTATSEAPI---DANTLAVGAQRNVAVENMVEMG---YERSEVE 165
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RA+RAA+NNP+RAVEYL +GIPE + + A ++ PT S+G
Sbjct: 166 RAMRAAFNNPDRAVEYLLTGIPEDILNRQREESAAALAAQQQQSEALAPT------STG- 218
Query: 241 NANPLDLFPQGLPDVG------SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
P +LF Q S G L FLR+ PQFQ LR +VQ NPQ+L+ +LQ+
Sbjct: 219 --QPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQ 276
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLE 354
+G+ +P L + I ++ FL+L+ E G EG G+ IQ+T EE E+I+RL
Sbjct: 277 IGQGDPALAQAITQNPEAFLQLLAE---GAEGESALPSGGIQ---IQITQEESESIDRLC 330
Query: 355 AMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+GFDR IV++ + AC+KNEELAANYL +H HE ED
Sbjct: 331 QLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366
>gi|392576824|gb|EIW69954.1| hypothetical protein TREMEDRAFT_68394 [Tremella mesenterica DSM
1558]
Length = 379
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 150/394 (38%), Positives = 212/394 (53%), Gaps = 29/394 (7%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+KI +KT++ F VE + +TV DVK KIE S +P QQ +IY GK+L+DDT++
Sbjct: 1 MVKITLKTVQNKLFTVEAEEAETVGDVKRKIEE---SQTFPVEQQKIIYSGKILQDDTSI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
K+ E F+V+M++K P AP+ A P +A ++
Sbjct: 58 GSLKIKEKDFLVVMVSK--------------PKAAPKPVATPTPTEPPAPVASASEVTPA 103
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
A A + ++ +A + + G ++S+ V G L+ AI +++MG ++ D VV
Sbjct: 104 APAASPIAGLDTTAAAPAAETATSATGLSSSSFVTGPALQAAISSMVEMG---FEHDQVV 160
Query: 181 RALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS-- 237
RALRA+YNNP+RAV+YL SG IPE P A AP A PT P+Q +
Sbjct: 161 RALRASYNNPDRAVDYLMSGNIPEVEGPAPAATAPPTQTAPTIPTPAAAPSQTPAAPAAQ 220
Query: 238 ---SGPNANPLDLFPQGLPDVGSGA-AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQ 293
SG + +LF D G+ A A SL+ L NSPQ Q LR MVQ NP L+ P+LQ
Sbjct: 221 PAPSGSAGSAENLFATVARDRGTSAPANVPSLEALGNSPQLQRLRQMVQQNPALIGPLLQ 280
Query: 294 ELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERL 353
++ NP L +LI +H + V GGEG D L G I +T +E EA++RL
Sbjct: 281 QVAAHNPALAQLINQHPEAVYEWLG--VGGGEGEDDDDLMGPQTMRIDLTQQEAEAVQRL 338
Query: 354 EAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
E +GFDR +VL+ + C+KNEELAANYL + E
Sbjct: 339 EQLGFDRQVVLQAYLLCDKNEELAANYLFEQGEE 372
>gi|328861399|gb|EGG10502.1| hypothetical protein MELLADRAFT_93497 [Melampsora larici-populina
98AG31]
Length = 416
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 149/420 (35%), Positives = 223/420 (53%), Gaps = 43/420 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL+ F ++V+P T+ ++K++I+ QG + Q +I+ GK+L D+ +
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSITIANLKLQIKESQG---FEPELQKIIFSGKILSDEKLIS 57
Query: 62 ENKVAENSFVVIMLTKNKR-PTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST- 119
+ +V E F VIML K K PT + S A + +SAP +TPA P T+ P +
Sbjct: 58 DIEVKEKDFFVIMLMKPKTAPTVPAPSTSAAAVPS-STSAPVQTSTPAAPPATSTPSANP 116
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
E TPA T P +A SS A + G + G+ L+ I +I++ G + R+ V
Sbjct: 117 ESTPATTTEPQAAVDSSTPAVAP----GTQDPGFLTGSGLQTTIDEIVN--GMGFPREEV 170
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ---PAPVT 236
V+A+RAA+NNP+RAVEYL +GIP + P + AP G + P P PAPV
Sbjct: 171 VKAMRAAFNNPDRAVEYLMTGIPAGLDALPPSAAPRAGAPTPATATAPTPGANAVPAPVA 230
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGS-----------------LDFLRNSPQFQVLRA 279
+ + N + Q + AA A L+ LRN+PQ LR
Sbjct: 231 PTTASRNLFEAAAQHVAQQRQPAAAATPAAAPAGAAGATANTSRVLESLRNNPQMVQLRQ 290
Query: 280 MVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV-QGGEGNLGDQLAGLMP- 337
+VQ NPQLLQP +Q+LG+ NP L+ + + + ++E Q G+ + +
Sbjct: 291 LVQTNPQLLQPFMQQLGQSNPALLAQLSANPELLMGFLSEGADQAGDFGMDEGGFPPGLG 350
Query: 338 -------QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
Q +QVTPEE+EAI+RL MGF+R + ++ +FAC+KNEE+AANYL++ H FED
Sbjct: 351 GGDGTGAQYVQVTPEEQEAIDRLVGMGFERQLAIQAYFACDKNEEMAANYLVE--HGFED 408
>gi|304367641|gb|ADM26628.1| nucleotide excision repair factor Rad23 [Polypedilum vanderplanki]
Length = 383
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 206/416 (49%), Gaps = 60/416 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ + +E TV +K KIE+ G + YPA+QQ LIY G +L DD T+E
Sbjct: 1 MWITIKNLQQQTIKLEFDESQTVQKLKEKIESELGKE-YPASQQKLIYAGCILDDDKTIE 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGE-------GSTRSTAPTKAPQSSAPTPAATPATAPQTA 114
KV E F+V+M+ K G T + T + TPA+ T +
Sbjct: 60 SYKVDEKKFIVVMVKKATVAAAAAPEKEEAGKTITNEST-TEKKKEDTPASKSTTTASST 118
Query: 115 VPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
S + A+ +S A + A +NLV G N +Q I++MG +
Sbjct: 119 SSPSKSSSEQSQQPAAAQETASGGAAASQSQIAQAEANLVMGENYNTMVQNIMEMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
DRD+VVRAL A++NNPERAVEYL +GIPE M +PAP
Sbjct: 176 DRDSVVRALNASFNNPERAVEYLITGIPE----------------------MALQDRPAP 213
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGS--------LDFLRNSPQFQVLRAMVQANPQ 286
V + + L D S A +G L FLR QFQ +R ++Q NP+
Sbjct: 214 VGGNEQSGGGGGNIGAAL-DRSSNLASSGESGGNDESPLAFLRRQAQFQQMRNVIQQNPE 272
Query: 287 LLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGE-----------GNLGDQL-AG 334
+L +LQ++G+ NP L++LI E+Q F+ ++NE G + GN G L G
Sbjct: 273 MLNAVLQQIGQANPALLQLISENQEAFVNMLNESEDGRQAPSGGNDDDDRGNFGGLLDVG 332
Query: 335 LMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+P + T ++REAIERL+A+GF +V++ + AC KNE LAAN+LL F+D
Sbjct: 333 SVP---EFTQQDREAIERLKALGFPDELVVQAYIACEKNENLAANFLLSQT--FDD 383
>gi|321479297|gb|EFX90253.1| hypothetical protein DAPPUDRAFT_299929 [Daphnia pulex]
Length = 381
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 147/421 (34%), Positives = 209/421 (49%), Gaps = 72/421 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + KTL+ T+F +E+ P TV +K KIE +G D YPA Q LIY GK+L D + L
Sbjct: 1 MLVTFKTLQNTTFQIEIDPSSTVKTLKEKIEKEKGVD-YPAVGQKLIYAGKILDDVSVLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E+ + E F+VIM+TK P +T Q +A A + +
Sbjct: 60 EHGIDEKKFIVIMVTK---PKASEPATTTPAETTTQPAATPAPVVVPAAAPAPTLATPQ- 115
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
ASVS+ +ES L+ G++ +Q I+DMG + RD V R
Sbjct: 116 --------GDASVSTGLLAAESA--------LIVGDDYNQMVQNIMDMG---YPRDQVER 156
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN---GQAANSPTQMPQPTQPAPVTSS 238
ALRA++NNP+RAVEYL +GIP++A+V A G +AA + A ++
Sbjct: 157 ALRASFNNPDRAVEYLLTGIPDRADVGEGAPGGGGQGPDEAALEFILGGRGQSEAALSME 216
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
G +L P G L FLR+ PQF +R +VQ NP LL +LQ++G+
Sbjct: 217 GEGEEGDELAP-----------GEDPLAFLRSQPQFAQMRQVVQQNPSLLNAILQQIGQT 265
Query: 299 NPQLVRLIQEHQADFLRLINEPV-----------------------------QGGEGNLG 329
NP L+++I ++QA F R++ EP QG E G
Sbjct: 266 NPALLQMISQNQAAFFRMLTEPSSGTAGSASVTPASGAQPGTGSGRAAESPRQGQEEGAG 325
Query: 330 DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 389
D A P I VTP+++EAIERL+A+GF +V++ +FAC KNE LAAN+LL F+
Sbjct: 326 DYFA---PGVIHVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLLS--QNFD 380
Query: 390 D 390
D
Sbjct: 381 D 381
>gi|432885045|ref|XP_004074630.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 395
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 147/417 (35%), Positives = 213/417 (51%), Gaps = 51/417 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F +++ E+TV +K +IE +G + + A Q LIY GK+L DDT L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVKTLKERIEQEKGKESFSVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT------APQTAV 115
E K+ E +FVV+M+TK K + S + + + + AA T P
Sbjct: 61 EYKIDEKNFVVVMVTKPKTAAPSPKSSSASSSAPSSAPSSAAAAAAPTPPSVADKPAEVA 120
Query: 116 PIST-EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P E + T P + S+ S + + A S LV G++ + + +++ MG +
Sbjct: 121 PADKLEEKESSTAEPPPPPPPARSSESSTDLLSEAVSTLVTGSSYDTMVNEMMLMG---Y 177
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP+RAVEYL SGIP GQ S T P T P
Sbjct: 178 EREQVVAALRASYNNPDRAVEYLLSGIP--------------GQDQGSRTG-PDST---P 219
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
S P A + A G L FLRN PQF V+R ++Q N LL +LQE
Sbjct: 220 AVSESPAAPAGGTAAPTSTESSPSAGGGNPLGFLRNQPQFHVMRQLIQQNAALLPALLQE 279
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEP---------------------VQGGEGNLGDQLA 333
+G++NP+L++ I HQ F++++NEP +G G D
Sbjct: 280 IGRENPELLQEISNHQEQFIQMLNEPNPDPVPGGGGGGGGGGGGGGGARGAGGTGADTSG 339
Query: 334 GLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 340 ESQMSYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL--QQNFDD 394
>gi|256082440|ref|XP_002577464.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|84657284|gb|ABC60029.1| DNA repair protein [Schistosoma mansoni]
gi|360044630|emb|CCD82178.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 354
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 132/390 (33%), Positives = 211/390 (54%), Gaps = 54/390 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL +F ++ + +D + DVK KIE GS+ + A Q LI+ GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ KV E+ FVV+M +P+ + + ++A + S PT P T ++ V TE
Sbjct: 60 DYKVTESGFVVVMSVS--KPSKDTTKEASASVQ----SNPTGETKPTTDKKSPV---TEA 110
Query: 122 TPAPTPAPASASVSSV-----SATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
AP+ P + S S++ + +S + G S+LV G N E +++++ MG ++R
Sbjct: 111 NEAPSSKPDANSQSNLPTVTTAPSSATSTLGFGESSLVTGENFERVVKELMSMG---FER 167
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
V++A+RA +NNP+RA EYL SG ++ +R ++ +
Sbjct: 168 SLVIQAMRAGFNNPDRAFEYLSSGNIPNVDIVDQSREREESESVS--------------- 212
Query: 237 SSGPNANPLDLFPQGLPDVGS-GAAGAGSLD---FLRNSPQFQVLRAMVQANPQLLQPML 292
P+G D + G+ GS D L + PQFQ +RA+VQANP+LL ++
Sbjct: 213 ------------PEGPGDTDTPGSESLGSEDPIAALASLPQFQQMRALVQANPELLPQLI 260
Query: 293 QELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIER 352
Q++G N L RLIQE++ FL IN PV G G Q ++ +T EER A++R
Sbjct: 261 QQIGNDNADLFRLIQENEQAFLEFINTPVTGT-TRPGSQRQTVLT----MTAEERAAVDR 315
Query: 353 LEAMGFDRAIVLEVFFACNKNEELAANYLL 382
L+A+GF +V++ ++AC KNE+ AAN+LL
Sbjct: 316 LKALGFPEELVIQAYYACEKNEDAAANFLL 345
>gi|326469095|gb|EGD93104.1| UV excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 381
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 161/413 (38%), Positives = 226/413 (54%), Gaps = 58/413 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++ +P D + DVK KI T +G +PA+QQ LIY GK+L+DD T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K S + + ++ P ++ PA +AP A ++E
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAP---SASAASSSQTPAAAPSAPAPVTPSAPSRANAAASE- 113
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TPA TP+PA + SG + S L+ GN + AI Q+L MG + R + R
Sbjct: 114 TPA-TPSPAGGA--------SSGATFNDPSALLMGNQGQEAITQMLAMG---FSRGDIDR 161
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAAY NP+RA+EYL +GIPE++E + + G AA T + + A V S
Sbjct: 162 AMRAAYFNPDRAIEYLLNGIPEESEREAPSAPAAAGGAARPST-TSEESSDAQVQES--- 217
Query: 242 ANPLDLFPQGLPDVGSGAA----------------------GAGSLDFLRNSPQFQVLRA 279
L+LF Q G GSL+FLRN+P FQ LR
Sbjct: 218 ---LNLFEQSAAQASGGGGARGRGAGAGAGTGGAGAGETAGSLGSLEFLRNNPHFQQLRQ 274
Query: 280 MVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP-- 337
+VQ PQ+L+P+LQ++G NPQL +LI ++Q FL+L++E V D L P
Sbjct: 275 LVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDV--------DDETQLPPGT 326
Query: 338 QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
QSI VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E ED
Sbjct: 327 QSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENED 379
>gi|256082442|ref|XP_002577465.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|360044631|emb|CCD82179.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 341
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/385 (34%), Positives = 207/385 (53%), Gaps = 57/385 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL +F ++ + +D + DVK KIE GS+ + A Q LI+ GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ KV E+ FVV+M +P+ + + ++A + S PT P T ++ V + E
Sbjct: 60 DYKVTESGFVVVMSVS--KPSKDTTKEASASVQ----SNPTGETKPTTDKKSPVTEANE- 112
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P+ T AP+SA+ G S+LV G N E +++++ MG ++R V++
Sbjct: 113 APSITTAPSSAT----------STLGFGESSLVTGENFERVVKELMSMG---FERSLVIQ 159
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RA +NNP+RA EYL SG ++ +R ++ +
Sbjct: 160 AMRAGFNNPDRAFEYLSSGNIPNVDIVDQSREREESESVS-------------------- 199
Query: 242 ANPLDLFPQGLPDVGS-GAAGAGSLD---FLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
P+G D + G+ GS D L + PQFQ +RA+VQANP+LL ++Q++G
Sbjct: 200 -------PEGPGDTDTPGSESLGSEDPIAALASLPQFQQMRALVQANPELLPQLIQQIGN 252
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMG 357
N L RLIQE++ FL IN PV G G Q ++ +T EER A++RL+A+G
Sbjct: 253 DNADLFRLIQENEQAFLEFINTPVTGT-TRPGSQRQTVLT----MTAEERAAVDRLKALG 307
Query: 358 FDRAIVLEVFFACNKNEELAANYLL 382
F +V++ ++AC KNE+ AAN+LL
Sbjct: 308 FPEELVIQAYYACEKNEDAAANFLL 332
>gi|226470142|emb|CAX70352.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489693|emb|CAX74997.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489695|emb|CAX74998.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489697|emb|CAX74999.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
Length = 350
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 209/386 (54%), Gaps = 50/386 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTLK +F ++++ +D V DVK KIE +GS+ + A+ Q LI+ GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ KV ++ FVV+M +P EGS ++AP PT T P V S
Sbjct: 60 DYKVTDSGFVVVMSVS--KPAKEGS--ASAPGNPAGEGRPT---TDKKIPDVDVTESPSS 112
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P P S + + ++ + G S+LV G N E +Q+++ MG +++ V+R
Sbjct: 113 KPDANSQP-SLPTVTTTQSTTTNTLGFGESSLVTGENFERVVQELVSMG---FEKPLVIR 168
Query: 182 ALRAAYNNPERAVEYLYSG-IPEQAEV-QPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
A+RA +NNP+RA EYL SG IP V QP R G + SP AP +
Sbjct: 169 AMRAGFNNPDRAFEYLSSGNIPNIDIVDQPSQR---EGSESVSPE--------APGDADT 217
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLD---FLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
P G+ AGS D L + PQFQ +RA+VQANP+LL ++Q++G
Sbjct: 218 P-----------------GSESAGSEDPIAALASLPQFQQMRALVQANPELLPQLIQQIG 260
Query: 297 KQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM 356
N L RLIQE++ FL +N PV G + AG + +T EER A++RL+A+
Sbjct: 261 NDNADLFRLIQENEQAFLEFLNTPVTGTT-----RPAGQRQTILTMTAEERAAVDRLKAL 315
Query: 357 GFDRAIVLEVFFACNKNEELAANYLL 382
GF +V++ ++AC KNE+ AAN+LL
Sbjct: 316 GFPEELVIQAYYACEKNEDAAANFLL 341
>gi|91085045|ref|XP_974357.1| PREDICTED: similar to putative RAD23-like B [Tribolium castaneum]
gi|270009030|gb|EFA05478.1| hypothetical protein TcasGA2_TC015662 [Tribolium castaneum]
Length = 334
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 146/401 (36%), Positives = 205/401 (51%), Gaps = 79/401 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI V+ L +F + ++P TV D+K +IE +G D Y Q LIY+GK+LKD+ L
Sbjct: 1 MKITVRNLYQKNFIIHIEPSKTVKDLKQQIEAEKGKD-YRWDYQRLIYRGKILKDEAPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + E+ F+VIM++K T E ++ A Q SA AA AP
Sbjct: 60 EYNIDEDKFIVIMVSKPDSGTTE--VANSGDNSATQPSATPAAAPAPAAPAAPA------ 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A S++S+ +ES L+ G E +Q I+DMG + RD V +
Sbjct: 112 --------PVAPASNLSSEAESA--------LLMGEEYENMVQNIVDMG---YPRDQVEQ 152
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRA+YNNP+RAVEYL +GIP E Q + AP S
Sbjct: 153 ALRASYNNPDRAVEYLINGIPAMGEDQ----------------------EAAPSMS---- 186
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
G+ + S A+ L FLR+ PQFQ ++ +VQ NPQLL +LQ+LG+ NP
Sbjct: 187 ---------GIDERQSDASDP--LAFLRSQPQFQQMKQVVQQNPQLLNAVLQQLGQTNPA 235
Query: 302 LVRLIQEHQADFLRLINEPVQG----GEGN--------LGDQLAGLMPQSIQVTPEEREA 349
L+ LI ++Q F+RL+NEP G GN G +IQ TP++++A
Sbjct: 236 LLNLISQNQESFVRLLNEPSAGAAPAATGNAPPAPVVAQGGGGTPPQGTTIQFTPQDKDA 295
Query: 350 IERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
IERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 296 IERLKALGFPEHLVVQAYFACEKNENLAANFLLS--QNFDD 334
>gi|296418227|ref|XP_002838743.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634704|emb|CAZ82934.1| unnamed protein product [Tuber melanosporum]
Length = 385
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 155/404 (38%), Positives = 223/404 (55%), Gaps = 47/404 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++ +P DT+ VK KI +G D AA Q LIY GK+L+DD T+
Sbjct: 1 MKLTFKDLKQQKFVIDAEPTDTISQVKEKINKEKGWD---AAAQKLIYSGKILQDDKTVG 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ K+ E FVV M++ + +++ + A SSA TP P+T Q++VP P
Sbjct: 58 DYKIEEKGFVVCMISNKPK-------AASSSSAAGSSSASTPVKAPSTPAQSSVP----P 106
Query: 122 TP-APTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
TP AP A +S S+ +A E+ A N+ E AI ++ MG ++R +
Sbjct: 107 TPSAPAQAVTGSSTSTSAAVPETPTPAGAVGTTF--NDPEDAIVNMMGMG---FERSEIE 161
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARA----PGNGQAANSPTQMPQPTQPAPVT 236
RA+RAA+ NP+RAV+YL +GIPE + A++ P A ++ +
Sbjct: 162 RAMRAAFFNPDRAVDYLLNGIPEHLTQERPAQSSTTRPAAQSAQSAARPAAATAPATGGS 221
Query: 237 SSGPNANP--LDLFPQ---------GLPDVG--SGAAGAGSLDFLRNSPQFQVLRAMVQA 283
+SG A P ++LF G G GAA G+LDFLRN+PQFQ LR +VQ
Sbjct: 222 ASGEGAEPENINLFEAAAAAASQRGGAHSQGRSGGAASLGNLDFLRNNPQFQQLRQVVQQ 281
Query: 284 NPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP---QSI 340
PQ+L+P+LQ++G NPQL I + FLRL++E + D+ G +P I
Sbjct: 282 QPQMLEPILQQVGMGNPQLAATISSNPEAFLRLLSE-------DPADEDGGALPPGSNHI 334
Query: 341 QVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
VTPEE +AIERL +GFDR +V++ +FAC+KNEELAAN+L +
Sbjct: 335 SVTPEESDAIERLCRLGFDRDMVIQAYFACDKNEELAANFLFEQ 378
>gi|332025640|gb|EGI65802.1| UV excision repair protein RAD23-like protein B [Acromyrmex
echinatior]
Length = 360
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/412 (32%), Positives = 197/412 (47%), Gaps = 85/412 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E+ TV D+K KIET +G +PA Q LIY GK+L D+ L
Sbjct: 1 MIITLKNLQQQTFTIEIDSLQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + E F+V+M+TK K G+T T+ + + + + AT T+P
Sbjct: 58 EYNIDEKKFIVVMVTKPKT----GATPKTSEEQRTEGDKKEESTSSAT---------TQP 104
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAA--SNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ P + + S+V + S L+ G + + I+DMG ++R+ V
Sbjct: 105 SSNPNVQDTTRAASNVQEQPVAAAPAAGQAESALLMGEDYNTMVNNIMDMG---YEREQV 161
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V+ALRA++NNP+RAVEYL +GIP Q P P + +Q P
Sbjct: 162 VQALRASFNNPDRAVEYLITGIPAQLFEDPPEDPPEAQEQLQDQSQDP------------ 209
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
L FLR PQFQ +R ++Q NPQLL +LQ++G N
Sbjct: 210 -------------------------LAFLRLQPQFQQMRQVIQQNPQLLNNLLQQIGSTN 244
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS-------------------- 339
P L++LI ++Q F+R++NEP + G L
Sbjct: 245 PALLQLISQNQETFVRMLNEPAEPTTGTGARVLPSGGGVGPAAAATAGGAVNGGPGAGAA 304
Query: 340 -------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
IQ+TP++REAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 305 TGVGSGLIQITPQDREAIERLKALGFPEHLVVQAYFACEKNENLAANFLLSQ 356
>gi|391330987|ref|XP_003739932.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Metaseiulus occidentalis]
Length = 336
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 198/387 (51%), Gaps = 60/387 (15%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
++ + VK L F +E+ + TV D+K KI ++G+ +PA Q LI QG+++ D +
Sbjct: 2 LLTVNVKCLTNELFTIEIDDDCTVKDMKEKISEIKGA-AFPAVHQKLIAQGRIMADQDKV 60
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
+ + FVVIM++K G+ A T+ P + A A P +P+ +
Sbjct: 61 KTYDLKSVKFVVIMVSK----PATGAQPGAASTEQPAAPAAAAEAKPVESPEE------K 110
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P A TP S ++ S S +G S LV G + ++ I +MG + +D V
Sbjct: 111 PKEAGTPTATRPSTTTPSTDSSAG----NESTLVVGEQYKQMVESITEMG---YPQDQVE 163
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RALRA+YNNP+RAVEYL +G P + E A P P QP
Sbjct: 164 RALRASYNNPDRAVEYLVTGFPPEEEEARAAENPR------------APRQP-------- 203
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
GA G L FLRN PQFQ +R ++ NP LL ++Q+LG NP
Sbjct: 204 -----------------GAGTQGDLSFLRNQPQFQQMRNAIRDNPALLDTIIQQLGSNNP 246
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNL-----GDQLAGLMPQSIQVTPEEREAIERLEA 355
L+RLI ++Q DF+RL+NE EG L G G + VTP++REAIERL+A
Sbjct: 247 DLLRLITQNQDDFMRLLNEEDDAAEGALPELGEGAPAGGPLVIEAHVTPQDREAIERLKA 306
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLL 382
+GF +V+E +FAC+KNE+LA N+LL
Sbjct: 307 LGFPEHLVVEAYFACDKNEDLAVNFLL 333
>gi|194771119|ref|XP_001967622.1| GF19257 [Drosophila ananassae]
gi|190614417|gb|EDV29941.1| GF19257 [Drosophila ananassae]
Length = 405
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/441 (31%), Positives = 213/441 (48%), Gaps = 102/441 (23%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E + E TVF++K KI V+GS+ Y +Q LIY G +L DD T+
Sbjct: 1 MIITIKNLQQQTFTIEFEAEKTVFELKKKIFDVRGSE-YIVEKQKLIYAGVILVDDHTIS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
V E F+V+MLT R TA SS A Q + ++T+P
Sbjct: 60 SYNVDEKKFIVVMLT-----------RDTA------SSTCQSRIKEADNAQNRLCLNTQP 102
Query: 122 TPAPTPAPASASVSS------VSATSES-------------GVYGHAASNLVAGNNLEGA 162
P+ + + S +SAT+E+ + A SNL+ G+
Sbjct: 103 LPSEITSNSDTFCGSTNQPIIISATNETKQRNDLVGELENVSLQSRAESNLLMGDEYTQT 162
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
+Q +++MG + R+ V RA+ A++NNPERAVEYL +G+P AE + +
Sbjct: 163 VQSLIEMG---YPREQVERAMSASFNNPERAVEYLINGLP--AEDENIFHVD-------- 209
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
+ T P+ V S N + L S + + +FLR+ PQF +R+++
Sbjct: 210 ----EESTNPSLVQSGPQNIS-------ALSTGHSTGSSSDPFEFLRSQPQFLQMRSLIY 258
Query: 283 ANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN--------------- 327
NP LL +LQ++G+ NP L++LI E+Q FL ++N+P++ G
Sbjct: 259 QNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIENDSGAADAVPRTSTNRRRRV 318
Query: 328 LGDQLAGLMP--------------------------QSIQVTPEEREAIERLEAMGFDRA 361
+L G + +I++ +E+EAIERL+A+GF A
Sbjct: 319 FSSELEGAVAAHRLGTNELRENQTGGNDEPFEHPGVATIRLNSQEQEAIERLKALGFPEA 378
Query: 362 IVLEVFFACNKNEELAANYLL 382
+VL+ +FAC KNEELAAN+LL
Sbjct: 379 LVLQAYFACEKNEELAANFLL 399
>gi|430811680|emb|CCJ30877.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1394
Score = 190 bits (482), Expect = 1e-45, Method: Composition-based stats.
Identities = 140/391 (35%), Positives = 214/391 (54%), Gaps = 53/391 (13%)
Query: 2 MKIFVKTLKGTSFDVE-VKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
MK+ K LK F ++ V P T+ VK I+ VQG D+ Q LIY GK+L D T+
Sbjct: 1040 MKLTFKDLKQQKFTIDNVDPRCTILQVKEMIQEVQGHDL---KHQKLIYSGKILLDSNTV 1096
Query: 61 EENKVAENSFVVIMLTKNKR-PTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
E + E F+V M+ K K+ P+ ST T S P A+AP+T++P
Sbjct: 1097 ESYDIKEKDFIVCMVQKPKQVPSASIVAESTVST---NQSDPK-----ASAPETSLP--- 1145
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
S +SVS++SE+ + ++LV G + AI+ +++MG ++R V
Sbjct: 1146 -----------SVPGTSVSSSSETF---NDPNSLVVGLLCDTAIKNMMEMG---YERTQV 1188
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
A+RAA+NNP+RAVEYL +GIPE + + ++ + Q + + + P ++
Sbjct: 1189 ENAMRAAFNNPDRAVEYLLTGIPEHLSRELLQQSSSSQQVSRAQQIVQSTPTSTPTSTPS 1248
Query: 240 PNANPLDLFPQ----GLPDVGS-------GAAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
+ N +L Q G + + G+ A SL FLRN+PQF +LR +VQ PQ+L
Sbjct: 1249 RSENLFELAAQVSQQGRERLNTSSGNSLMGSNNAESLAFLRNNPQFLMLRRLVQTQPQML 1308
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQ--SIQVTPEE 346
+ +LQ+LG+ N QL LI ++ FL+L++ EG GD A MP +Q+T EE
Sbjct: 1309 ESVLQQLGQGNLQLATLINQNSDAFLQLLS------EGMEGDGTAA-MPNIVQLQLTEEE 1361
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELA 377
R+AIERLEA+GF +V++ +FAC+KNEE++
Sbjct: 1362 RQAIERLEALGFSHGVVVQAYFACDKNEEVS 1392
>gi|440796341|gb|ELR17450.1| Rad23, putative [Acanthamoeba castellanii str. Neff]
Length = 393
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 147/393 (37%), Positives = 211/393 (53%), Gaps = 26/393 (6%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+K+ +KT++ F+VEV TV DVK K+E ++ +V A Q LI+ GK+L DD +
Sbjct: 1 MLKVQIKTIQQQQFEVEVPDTATVLDVKKKVEALRSENV---AWQKLIFAGKILADDAKI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
+ F+V+M+ K K + P A + PT A P A A
Sbjct: 58 NTLNIKPTEFLVLMVRKPKEANVAAPAPAAQPAAAATPAQPTQTAAPTPATPAA------ 111
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+ +S + AAS LV G++ E + I++MG + R+ V+
Sbjct: 112 ----------AEPPRPAQPSSGGSIESEAASALVTGSDFEAMVSNIMEMG---FPREEVL 158
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RALRA++NNP RAVEYL +GIP+ P + A A + + P
Sbjct: 159 RALRASFNNPNRAVEYLMTGIPDMPAQAPASPAAERAAAPAAGGEGAAEPGSPPAAGGEG 218
Query: 241 NANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
P L G G G ++LR PQF ++AMVQ NPQLL P+LQ+LG+
Sbjct: 219 AGEGGISLPSNLLGALMGQQGGAGGHFEWLRQHPQFNQIKAMVQRNPQLLGPLLQQLGQL 278
Query: 299 NPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS--IQVTPEEREAIERLEAM 356
NPQ++++I +HQA+F+ L+NEP+QGG G G P S IQVT EE+EAI+RL+A+
Sbjct: 279 NPQILQMIGQHQAEFMALLNEPIQGGAGGAPGGPGGAPPGSNYIQVTQEEKEAIDRLQAL 338
Query: 357 GFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 389
GF+R +V+E FFAC+K+E++ ANYL DH HE E
Sbjct: 339 GFERHVVIEAFFACDKDEQVTANYLFDHGHELE 371
>gi|340384331|ref|XP_003390667.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 363
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 145/391 (37%), Positives = 205/391 (52%), Gaps = 62/391 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I VKTL+ +F +E++ +V D+K IE QG + +PAA Q LIY GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E++FVV+M++K K + + S+ T ATP
Sbjct: 60 DYSIQESNFVVVMVSKIKPAPAPTPKPQETSSTSSSSTPSTSGATPQP------------ 107
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
SS++ T + E + ++ MG + R+ VVR
Sbjct: 108 -------------SSITGT-----------------DYERTVNDMVGMG---FMRNDVVR 134
Query: 182 ALRAAYNNPERAVEYLYSGIP-----EQAEVQPVARAPGNGQA--ANSPTQMPQPTQPAP 234
AL+A+YNNP RA+EYL P E+AE QP G Q +SP Q P +PA
Sbjct: 135 ALQASYNNPTRAMEYLCGERPMPTLEEEAEPQPRGSGAGGQQVPLTSSPPQAPPTQRPAG 194
Query: 235 VT--SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPML 292
+ S+ P+A P PQG G G + + L L PQFQ LRA VQ NP LL +L
Sbjct: 195 QSQQSTPPSAAPRP--PQGGLSAGGGQSASNVLQGLSQLPQFQALRAAVQQNPGLLPSLL 252
Query: 293 QELGKQNPQLVRLIQEHQADFLRLINEPVQG-GEGNLGDQLAGLMPQSIQVTPEEREAIE 351
QE+G+ NP+L++LI ++Q +F+ L+N+P Q G G + G + SIQVT EEREAI+
Sbjct: 253 QEIGQHNPELLQLINQNQQEFVDLLNQPPQPIGSGQ--ELPPGTV--SIQVTQEEREAID 308
Query: 352 RLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
RL+A+GF V++ + AC+KNE LAAN LL
Sbjct: 309 RLKALGFPEGEVIQAYLACDKNETLAANLLL 339
>gi|315049547|ref|XP_003174148.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
gi|311342115|gb|EFR01318.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
Length = 380
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 160/410 (39%), Positives = 223/410 (54%), Gaps = 53/410 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P + + DVK KI T +G +PA+QQ LIY GK+L+DD T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSEKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K + S++ T A APTPA A A A P+ T
Sbjct: 58 SYSIEEKGFIVCMVSKPKAAAPSAAAASSSQTPAAAPPAPTPATPSAPARVNAPPLQTPA 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP+P +S + S + S L+ GN + AI Q+L MG + R + R
Sbjct: 118 TPSPAGGASSGASSGATFNDPSA--------LLMGNQGQEAITQMLAMG---FSRGDIDR 166
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAAY NP+RA+EYL +GIP++ E + + A + + P T+ A S
Sbjct: 167 AMRAAYFNPDRAIEYLLNGIPDEPEREAPS-------APAAGSARPAATEGA---SESQV 216
Query: 242 ANPLDLFPQGLPDVGSGAAGA-------------------GSLDFLRNSPQFQVLRAMVQ 282
L+LF Q G +G GSL+FLRN+P FQ LR +VQ
Sbjct: 217 QESLNLFEQAAAQASGGGSGRSRGAGAGAGAGSGESAGSLGSLEFLRNNPHFQQLRQLVQ 276
Query: 283 ANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSI 340
PQ+L+P+LQ++G NPQL +LI ++Q FL+L++E V D L P QSI
Sbjct: 277 QQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDV--------DDETQLPPGAQSI 328
Query: 341 QVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E ED
Sbjct: 329 SVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENED 378
>gi|308808630|ref|XP_003081625.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS)
[Ostreococcus tauri]
gi|116060090|emb|CAL56149.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS),
partial [Ostreococcus tauri]
Length = 245
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/244 (45%), Positives = 150/244 (61%), Gaps = 19/244 (7%)
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
+ + +V G LE + I+ MG ++R+ V++ALRAA+NNP+RAVEYL +GIPEQAE
Sbjct: 5 SGAGMVMGPELEATVANIMTMG---FEREQVLKALRAAFNNPDRAVEYLLTGIPEQAEAP 61
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDV-GSGAAGAGSLDF 267
A AA S+ L+LFP+G+PD+ G GA G LDF
Sbjct: 62 RPAAQAQPAAAAAPQAPQAD-------VSAALGGGALNLFPEGIPDMSGDGAGDDGMLDF 114
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP----VQG 323
LR +PQFQ +RAMVQ NPQ+LQPML EL +QNPQL LI +Q +FL L+NEP +Q
Sbjct: 115 LRENPQFQAIRAMVQGNPQILQPMLAELQRQNPQLYHLINANQEEFLALLNEPLPENIQD 174
Query: 324 GEGNLGDQLAGLMPQS----IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
+ G+ + L Q I++T EERE ++RL +GF I +E F AC+KNE+LAAN
Sbjct: 175 LMSDFGEGVPELEGQGEGMQIELTQEERETVDRLAGLGFPVEICIEAFLACDKNEQLAAN 234
Query: 380 YLLD 383
YLL+
Sbjct: 235 YLLN 238
>gi|302506096|ref|XP_003015005.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
gi|291178576|gb|EFE34365.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
Length = 380
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 155/415 (37%), Positives = 218/415 (52%), Gaps = 63/415 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++ +P D + DVK KI + +G +PA+QQ LIY GK+L+DD T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIASEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATP---ATAPQTAVPIS 118
+ E F+V M++K K + S+ A S+ + A+AP + P
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPSASAASSSQTPAAAPSAPAPTTPSAPTRASAPASETP-- 115
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
TP+PA + SG + S L+ GN + AI Q+L MG + R
Sbjct: 116 ------ATPSPAGGA--------SSGATFNDPSALLMGNQGQEAITQMLAMG---FSRGD 158
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
+ RA+RAAY NP+RA+EYL +GIPE++ + + G AA +P+ A V S
Sbjct: 159 IDRAMRAAYFNPDRAIEYLLNGIPEESAREAPSAPAAAGGAARPSAASEEPSD-AQVQES 217
Query: 239 GPNANPLDLFPQGLPDVGSGAA---------------------GAGSLDFLRNSPQFQVL 277
L+LF Q G GSL+FLRN+P FQ L
Sbjct: 218 ------LNLFEQAAAQASGGGGARARGAGAGAGAGAGAEETAGSLGSLEFLRNNPHFQQL 271
Query: 278 RAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP 337
R +VQ PQ+L+P+LQ++G NPQL +LI ++Q FL+L++E V D L P
Sbjct: 272 RQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDV--------DDETQLPP 323
Query: 338 --QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
QSI VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E ED
Sbjct: 324 GAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENED 378
>gi|328771201|gb|EGF81241.1| hypothetical protein BATDEDRAFT_16317 [Batrachochytrium
dendrobatidis JAM81]
Length = 377
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 154/399 (38%), Positives = 214/399 (53%), Gaps = 47/399 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL+ +F VEV+ V +VK I +G Y A Q LI+ GK+L D +T+E
Sbjct: 1 MKLTFKTLQQDNFQVEVEQTAKVIEVKEAILAAKG---YTVASQKLIHSGKILNDASTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K++E F+V+M++K K + AP PT P P +AVP
Sbjct: 58 ELKISEKDFIVVMVSKPKPVAAPAPVVAPAPVTPAVPVTPTVPVAPTATPASAVP----- 112
Query: 122 TPAPT-PAPASASVSSVSATSESG-VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PA + P + + + +G VY +A SNL ++MG + RD V
Sbjct: 113 -PADSVDTPVNPETLTTTTALATGAVYENAVSNL-------------MEMG---FPRDQV 155
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
A+R A+NNP+RA EYL +GIP+ + + AP + T P T ++
Sbjct: 156 THAMRTAFNNPDRAAEYLMTGIPDSVAREFASTAP----VLSDTTTTPSSTAAPATPAAP 211
Query: 240 PNANPLDLFPQGLPDVG---SGAA-----GAG---SLDFLRNSPQFQVLRAMVQANPQLL 288
++LF SGAA GAG +L FLRNSPQFQ LR +V + PQLL
Sbjct: 212 AATQHINLFEAAAAQAAQSRSGAAASHAPGAGDASTLSFLRNSPQFQQLRQLVHSQPQLL 271
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNL----GDQLAGLMPQSIQVTP 344
QP+LQ++G+ NP+L++LI ++Q FL+++NE + G GN+ G M Q I VT
Sbjct: 272 QPLLQQIGQTNPELLQLISQNQGQFLQMLNEGSEEG-GNIASAEGADDTAAMGQQITVTT 330
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLD 383
EE EAI RL A+GFDR + LE +FAC+KNEELAANYL D
Sbjct: 331 EENEAILRLAALGFDRGLALEAYFACDKNEELAANYLFD 369
>gi|322794461|gb|EFZ17533.1| hypothetical protein SINV_80108 [Solenopsis invicta]
Length = 376
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 197/411 (47%), Gaps = 90/411 (21%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
+ V+ G +F +E+ TV D+K KIE +G +PA Q LIY GK+L D+ L E
Sbjct: 18 LIVEDYAGQTFTIEIDSSQTVKDLKEKIEMQKG---FPAEHQKLIYAGKILADEQPLTEY 74
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E F+V+M+TK P + +++ +A ++ T P + + I
Sbjct: 75 NIDEKKFIVVMVTK---PKAGATPKTSEEQRAEGDKKEESTSSATTQPSSNLNIQD---- 127
Query: 124 APTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRAL 183
+AS + + G A S L+ G + + I+DMG ++R+ VV+AL
Sbjct: 128 ----TTRAASNVQEQPAAAAPAAGQAESALLMGEDYNTMVNNIMDMG---YEREQVVQAL 180
Query: 184 RAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNAN 243
RA++NNP+RAVEYL +GIP Q P P + +Q P
Sbjct: 181 RASFNNPDRAVEYLLTGIPAQLFEDPPEDPPEAQEQLQDQSQDP---------------- 224
Query: 244 PLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLV 303
L FLR PQFQ +R ++Q NPQLL +LQ++G NP L+
Sbjct: 225 ---------------------LAFLRLQPQFQQMRQVIQQNPQLLNNLLQQIGSTNPALL 263
Query: 304 RLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS------------------------ 339
+LI ++Q F+R++NEPV+ G A ++P S
Sbjct: 264 QLISQNQEAFVRMLNEPVEPAAGTG----ARVLPASGGGVAPATAAAVGGAVNGGAGTGA 319
Query: 340 --------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
IQ+TP++R+AIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 320 AAGVGSGLIQITPQDRDAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 370
>gi|74195673|dbj|BAE39643.1| unnamed protein product [Mus musculus]
Length = 327
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 120/353 (33%), Positives = 179/353 (50%), Gaps = 64/353 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPA----------------- 104
E K+ E +FVV+M+TK K + + P SS P+P
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPT 114
Query: 105 ------ATPATAPQTAVPISTEPTPA-------PTPAPASASV--------SSVSATSES 143
+TPA+ + S+EP PA P PA V S+ +S S
Sbjct: 115 PALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 232 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 274
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRL 316
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F R
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFFRC 327
>gi|412992628|emb|CCO18608.1| predicted protein [Bathycoccus prasinos]
Length = 392
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 146/414 (35%), Positives = 207/414 (50%), Gaps = 62/414 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY--QGKVLKDDTT 59
MKI +KTL F++E+ ++ K ++G A L++ +G+VL+D+ T
Sbjct: 1 MKIHLKTLTAQKFEIEISDPSKTTILQCKKLAIEGQPQLGAETDFLVFVHKGQVLEDEKT 60
Query: 60 LEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
+ E ++ E+ FVV+M K K+P + + + AP P +SAP AA A A A+ T
Sbjct: 61 VSEAEITEDGFVVVMSKKTKKPAEKTTAAAPAPANPPATSAPDVAAPVAPAAAVAMAPQT 120
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P +P LV G LE AI+++ MG + RD
Sbjct: 121 -TAEVPVSSPG----------------------LVVGAELEKAIEELQAMG---FPRDQC 154
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV-TSS 238
V ALRAA+NNP+RAVEYL +GIPE V A + V T+
Sbjct: 155 VAALRAAFNNPDRAVEYLLNGIPEGMMVSAPAANAAAAAPPPAAAPGADAAAANAVRTAE 214
Query: 239 GPN------------------ANPLDLFPQGLP-----------DVGSGAAGAGSLDFLR 269
G + PL+LFPQG+P + + +L FLR
Sbjct: 215 GATASAPGVGAGGAPPAAADGSAPLNLFPQGIPANLAAAGAGGAEEEAQEGEVNTLAFLR 274
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG 329
++PQFQ +RAMVQ NP +LQPML EL +QNPQL LI +Q +FL+L+NEP +G
Sbjct: 275 DNPQFQAIRAMVQGNPSILQPMLGELQRQNPQLYHLINSNQEEFLQLLNEPSDFEAQGMG 334
Query: 330 DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLD 383
+ G M Q I+++ EE EA ERL A+GF +E + AC+KNEE+AANYL +
Sbjct: 335 E---GEMEQ-IELSKEENEACERLMALGFTMEQCVEAYIACDKNEEMAANYLFE 384
>gi|453087458|gb|EMF15499.1| UV excision repair protein Rad23 [Mycosphaerella populorum SO2202]
Length = 392
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 155/414 (37%), Positives = 214/414 (51%), Gaps = 56/414 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E +P +T+ VK KI +G D P+ Q+ LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFTIEAEPSETIGAVKGKISAEKGWD--PSTQK-LIYSGKILQDDNTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E F+V M +K K A TK + + P AAT AP A +T
Sbjct: 58 SYKIEEKGFIVCMTSKPK----------AAATKPAEPATPAKAATSTPAPPAAPAHTTSS 107
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P P+ A S+ ++ E +A L G AI + MG + RD +
Sbjct: 108 TSQPPATPSPAPASASASNEERSFNDPSA--LAMGEQRAAAIAGMEAMG---FARDQIDA 162
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RAVEYL +GIPE + Q A + Q A + Q P T A T +
Sbjct: 163 AMRAAFFNPDRAVEYLLNGIPE-SARQEQRAAAASPQPAPTQGQQPADTAGAETTQQQAS 221
Query: 242 ANPLDLFPQGLPDVGSGAAG-------------------------AGSLDFLRNSPQFQV 276
P++LF G G G + LDFLRN+PQFQ
Sbjct: 222 DEPVNLFEAAAQAGGGGRGGAGGRGAGDLGALGGGRGGAQGGQTESSQLDFLRNNPQFQQ 281
Query: 277 LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLM 336
LR +VQ PQ+L+P+LQ + NPQL ++I +H F++L+ E + GD +A +
Sbjct: 282 LRTVVQQQPQMLEPILQSVAAGNPQLAQIITQHPEQFMQLLAE-------DAGDDVA--I 332
Query: 337 P---QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
P Q I VT EER+AIERL +GFDR +V++ +FAC+KNEELAAN+L D E
Sbjct: 333 PPGAQEISVTAEERDAIERLCRLGFDRDLVVQAYFACDKNEELAANFLFDQPDE 386
>gi|217070100|gb|ACJ83410.1| unknown [Medicago truncatula]
gi|388522857|gb|AFK49490.1| unknown [Medicago truncatula]
Length = 142
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/144 (63%), Positives = 114/144 (79%), Gaps = 2/144 (1%)
Query: 247 LFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLI 306
+FPQ + AGAGSLDFLRN+PQFQ LR MVQ+NPQ+LQP+LQELGKQNP L+RLI
Sbjct: 1 MFPQ--ETISGAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLI 58
Query: 307 QEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEV 366
EH ++FL+LINEP+ G EG+ DQ MP ++ VTP E+EAI RLEAMGFDRA V+E
Sbjct: 59 DEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEA 118
Query: 367 FFACNKNEELAANYLLDHMHEFED 390
F AC+++E+LAANYLL++ +FED
Sbjct: 119 FLACDRDEQLAANYLLENAGDFED 142
>gi|195450799|ref|XP_002072638.1| GK13711 [Drosophila willistoni]
gi|194168723|gb|EDW83624.1| GK13711 [Drosophila willistoni]
Length = 420
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 144/455 (31%), Positives = 220/455 (48%), Gaps = 101/455 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I VK L+ +F ++ PE TV ++K KI +G++ P Q+ LIY G +L DD +
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKKKIFEERGAEYLPEKQK-LIYAGVILVDDRKIS 59
Query: 62 ENKVAENSFVVIMLTKN--------------KRPTGEGSTRSTAPTKAPQSSAPTPAATP 107
KV E F+V+MLT++ ++ + S + T P P +AP+PAA
Sbjct: 60 SYKVDEKKFIVVMLTRDAAPSSASSTTASTSEKVAEKPSEKKTNPEPTP--TAPSPAAVS 117
Query: 108 ATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQIL 167
A P + T + +P + ++VS T+ S A S+L+ G + ++
Sbjct: 118 APVPASVASSGASGTTSDSPN----TETTVSPTAPSTDQTRAESSLLMGEEYNRTVSSMV 173
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP 227
+MG + R+ V RA+ A++NNPERAVEYL +GIP + + Q+
Sbjct: 174 EMG---YPREQVERAMAASFNNPERAVEYLINGIPAEED------------------QLF 212
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
T P + S PN D P SG + A +FLR+ PQF +R+++ NPQL
Sbjct: 213 NDTDP--TSQSNPNPRVADASSINAP---SGRSTADPFEFLRSQPQFLQMRSLIYQNPQL 267
Query: 288 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG----DQLA-GLM------ 336
L +LQ++G+ NP L++LI E+Q FL ++N+P++G G + LA GL+
Sbjct: 268 LDAVLQQIGQTNPALLQLISENQDAFLNMLNQPLEGESSARGTARSEGLASGLLEVAAQR 327
Query: 337 -------------------PQSIQVTPEERE----------------------AIERLEA 355
P + + ERE AIERL+A
Sbjct: 328 SAAGAQETTSAARASVPGSPSATEGGASERETAEQQQLAEGVATIRLNPQDQDAIERLKA 387
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+GF A+VL+ +FAC K+EELAAN+LL F+D
Sbjct: 388 LGFPEALVLQAYFACEKDEELAANFLLS--SSFDD 420
>gi|327493259|gb|AEA86336.1| putative DNA repair protein [Solanum nigrum]
Length = 172
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/161 (62%), Positives = 125/161 (77%), Gaps = 4/161 (2%)
Query: 229 PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
PT P +S PN+ PL+LFPQ G+G AG GSLDFL N+ QFQ LR+MVQANPQ+L
Sbjct: 16 PTAP---SSGTPNSAPLNLFPQE-NVAGAGGAGLGSLDFLMNNQQFQALRSMVQANPQIL 71
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEERE 348
+PMLQELGKQNPQL+R IQEH +FL+LINEPV G +G++ D +P ++ VTPEE+E
Sbjct: 72 RPMLQELGKQNPQLLRSIQEHDQEFLQLINEPVDGSDGDMFDLADQEIPHTVSVTPEEQE 131
Query: 349 AIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 389
IERLEAMGFDRA+V+E F AC++NEELAANYLL+ ++E
Sbjct: 132 VIERLEAMGFDRALVIEAFLACDRNEELAANYLLEQAGDYE 172
>gi|441628881|ref|XP_003275714.2| PREDICTED: UV excision repair protein RAD23 homolog A [Nomascus
leucogenys]
Length = 397
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 213/429 (49%), Gaps = 75/429 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
+ I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--------TPATAPQT 113
+ ++ E +FVV+M+TK K G + +PT AP+SS P A PA
Sbjct: 63 DYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDK 122
Query: 114 AVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
+ + PT +P S S S E AAS LV G+ E + +I+ MG
Sbjct: 123 SPSEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG--- 174
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPT--------- 224
++R+ VV ALRA+YNNP RAVEYL +GIP A +P + Q + P
Sbjct: 175 YERERVVAALRASYNNPHRAVEYLLTGIP--ASPEPEHGSVQESQVSEQPATEAGGCARA 232
Query: 225 ----QMPQPTQPA---PVTSSGPNANP-LDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQV 276
QM P A T P+A+P L P L V S FL QF+
Sbjct: 233 ACALQMHSPCAFAFAVCFTWRKPSASPILQASPPAL--VCSS--------FLARHSQFKG 282
Query: 277 LRAMVQAN------PQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------V 321
+ + P L P+ Q++ + HQ F++++NEP V
Sbjct: 283 CDDLGRGGDQGCELPCLPHPLPQQISR-----------HQEQFIQMLNEPPGELADISDV 331
Query: 322 QGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYL 381
+G G +G++ + IQVTP+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+L
Sbjct: 332 EGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 389
Query: 382 LDHMHEFED 390
L F+D
Sbjct: 390 LS--QNFDD 396
>gi|449546744|gb|EMD37713.1| hypothetical protein CERSUDRAFT_83454 [Ceriporiopsis subvermispora
B]
Length = 363
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 216/395 (54%), Gaps = 39/395 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTL+ F ++ + DTV D+K KI QG V Q +IY GK+L D T+E
Sbjct: 1 MKLTVKTLQQKVFHIDAEGSDTVADIKQKISESQGHAV---ESQKIIYSGKILPDTKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS--T 119
++ E F+V+M++K K ++ ST+ T A + A A A +P A
Sbjct: 58 SCEIKEKDFLVLMVSKPKPTAAPAASSSTSTTTATPAPAVPSPAPTAPSPAPAATTPAAV 117
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+P AP APA A+ + ++ G +S V G+ L+ +IQ +++MG ++RD V
Sbjct: 118 QPPNAPLLAPAPATPVAAPQPAQERALGDLSS-FVTGDALQQSIQNMIEMG---FERDQV 173
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
+RALRA++NNP+RAVEYL++GIP E AA +P P Q A
Sbjct: 174 MRALRASFNNPDRAVEYLFNGIPAHLEAT----------AAGTPAPAPNLFQLAQQQQQQ 223
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
FP G+P G L L+N+PQFQ LR ++ NP L+QP++Q+L N
Sbjct: 224 QQQQATGGFP-GMP-------GGVDLAALQNNPQFQQLRQVIAQNPALVQPLIQQLAGAN 275
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNL-GDQLAGLMP---QSIQVTPEEREAIERLEA 355
PQ +L+ ++ L + GEG+ GD+ G +P I +TPEE+EAI+RLEA
Sbjct: 276 PQFAQLLAQNPEALLTALGL----GEGDFEGDE--GALPPGTHVINITPEEQEAIQRLEA 329
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+GF R V+E +FAC+KNEELAANYL D FED
Sbjct: 330 LGFPRQAVIEAYFACDKNEELAANYLFD--SGFED 362
>gi|170590706|ref|XP_001900112.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
gi|158592262|gb|EDP30862.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
Length = 354
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 190/390 (48%), Gaps = 78/390 (20%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+M + KT+ SF++E+ P T+ +VK KI +G YP Q LIY GKVL D T+
Sbjct: 22 VMLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTV 81
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPA--ATPATAPQTAVPIS 118
EE + + FVV+M+ + K P AP S P P+ PA A T P+S
Sbjct: 82 EEVMIDPSKFVVVMIARKK------------PIGAPVESTPQPSNLQIPAGAQVTTAPVS 129
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
+ TP T+ Q I+ MG + RD
Sbjct: 130 VADSGPSTPQNPDDLTPEQEETA----------------------QAIVAMG---YPRDK 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V+RALRA++ N +RAVEYL SGIPE+ ++ G+ ++A
Sbjct: 165 VIRALRASFFNGDRAVEYLCSGIPEEEDL------GGHQESAEH---------------- 202
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
+ G A G G LDFLR PQF+ LR +VQ+NP +L ++Q++ +
Sbjct: 203 ---------------EEGERAQGLG-LDFLRQLPQFEQLRELVQSNPAILPQIIQQIAQS 246
Query: 299 NPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQ-SIQVTPEEREAIERLEAMG 357
NP L+ IQ +Q +F+ L+N G AG Q +I VT ER+AI RL++MG
Sbjct: 247 NPALMEAIQNNQEEFVNLLNNGSVSSGGGGVAPSAGEQRQVAIHVTEAERDAINRLKSMG 306
Query: 358 FDRAIVLEVFFACNKNEELAANYLLDHMHE 387
F +V+E +FAC+KNE+LAANY+L M E
Sbjct: 307 FPEQLVIEAYFACDKNEDLAANYILARMDE 336
>gi|66363310|ref|XP_628621.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
gi|46229830|gb|EAK90648.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
Length = 362
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 129/389 (33%), Positives = 211/389 (54%), Gaps = 56/389 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI ++T++ T +VEV+ + ++ VK I+ + + V A++ LI+ G++L D T++
Sbjct: 22 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 79
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E +V++L+K A AA Q +
Sbjct: 80 DVGIKEGERLVVLLSK---------------------GASQKAAESQQNKQNNTSNESNT 118
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + ++++ + S S+ + A++ L+ G LE I I++MG ++R+ V R
Sbjct: 119 NTDPAASATTSNIQAQSGNSDPSIDSRASA-LLTGTELEKTITNIVNMG---FEREQVTR 174
Query: 182 ALRAAYNNPERAVEYLYSG--IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
A+RAA+NNP+RAVEYL SG IPE PVA N NS + A +TSS
Sbjct: 175 AMRAAFNNPDRAVEYLTSGLPIPEN----PVAPNHTNITPVNSNASLN-----AGLTSSE 225
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
DL + LP G+L+ LR +P FQ LR++VQ +P++L +L +G+ N
Sbjct: 226 ------DLSSEQLP---------GNLESLRTNPLFQQLRSVVQQDPRILPELLVRIGQSN 270
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
P++++LI E+Q +F+R++ E E +G+ M +IQ+TP+E E++ERL+A+GF
Sbjct: 271 PEILQLITENQEEFIRMM-ERTDSDE--VGETSQFPMQTTIQLTPQEAESVERLQALGFP 327
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEF 388
R V+E + C KNEELAANYLL++ +F
Sbjct: 328 RNAVIEAYLICEKNEELAANYLLENSADF 356
>gi|254569268|ref|XP_002491744.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|238031541|emb|CAY69464.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|328351754|emb|CCA38153.1| Probable DNA repair protein RAD23 [Komagataella pastoris CBS 7435]
Length = 338
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 202/394 (51%), Gaps = 67/394 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI K LK ++V P DT+ K K+ TV+ SD A++ +Y GKVL+DD +
Sbjct: 1 MKIVFKDLKKEKVILDVDPTDTILSAKEKLATVKNSD---ASKIKFVYSGKVLQDDKDFD 57
Query: 62 ENKVAENSFVVIML---TKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
KV EN ++ ML K + P + ++S + T AP AVP
Sbjct: 58 AFKVKENDVIIFMLPSVFKKEEP-------KNLENRIDKTSTESSKTTTIAAPGIAVP-- 108
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
P P S S + AS GN+ E AI+ I++MG +DR
Sbjct: 109 ------PVPVNTSGSFN--------------ASTFAVGNDRENAIRNIMEMG---YDRSQ 145
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA---RAPGNGQAANSPTQMPQPTQPAPV 235
V ALRAA+NNP+RAVEYL +G+P E +P+A AP +G++ PV
Sbjct: 146 VEAALRAAFNNPDRAVEYLLTGLPVNNE-EPIAGSRSAPNDGRSQ-------------PV 191
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLR---AMVQANPQLLQPML 292
+S+G + + P D+ AA A S R + Q L ++Q NP++++P L
Sbjct: 192 SSTGVESTSTETAPG--TDLFEAAAVASSGQQQRENTQRDDLMQIGELIQNNPEMVEPFL 249
Query: 293 QELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIER 352
Q++ NPQL LIQ++ +F+R + E GEG L D+ G+ IQV PEE AI R
Sbjct: 250 QQIASSNPQLAELIQQNPEEFMRALMEG-DNGEGELEDE--GV---QIQVAPEEEAAINR 303
Query: 353 LEAMGFDRAIVLEVFFACNKNEELAANYLL-DHM 385
L +GFDR +V++V+FAC+KNEE+ A+ L +H+
Sbjct: 304 LCELGFDRNLVVQVYFACDKNEEMTADLLFSEHI 337
>gi|194913607|ref|XP_001982736.1| GG16385 [Drosophila erecta]
gi|190647952|gb|EDV45255.1| GG16385 [Drosophila erecta]
Length = 414
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 209/436 (47%), Gaps = 83/436 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E PE TV ++K KI +G + Y A +Q LIY G +L DD T++
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVD 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEG-----STRSTAPTKAPQSSAPTPAATPATAPQTAVP 116
V + F+V+MLT++ + + T + S P A + +P T
Sbjct: 60 SYNVDDKKFIVVMLTRDSSSSNPNQLSVKESDKLISTDDSKDSMPGEEANHSNSPCTK-- 117
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
+TE + P+ ++ + + +++ + A SNL+ G + +++MG + R
Sbjct: 118 -NTEESVLPSETTPLSTDNLIGDLAQASLQSRAESNLLMGEEYNQTVLSMVEMG---YPR 173
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ V RA+ A+YNNPERAVEYL +GIPE+ G N + P+ V
Sbjct: 174 EEVERAMAASYNNPERAVEYLINGIPEE-----------EGTIDNGVNESTNPS----VI 218
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
+SGP + + + +FLR PQF +R+++ NP LL +LQ++G
Sbjct: 219 ASGPQTVSASSVER------PAESNSDPFEFLRRQPQFLQMRSLIYQNPHLLHAVLQQIG 272
Query: 297 KQNPQLVRLIQEHQADFLRLINEPV---------------------QGGEGNLGDQLAG- 334
+ NP L++LI E+Q FL ++N+P+ QG NL G
Sbjct: 273 QTNPALLQLISENQDAFLNMLNQPIERESESSTTVPGVSSAGTHSTQGNVSNLFSSDLGA 332
Query: 335 ----------------------------LMPQSIQVTPEEREAIERLEAMGFDRAIVLEV 366
L +I++ ++++AIERL+A+GF A+VL+
Sbjct: 333 ASAQRSTAGTSAAQQSGSSAEHEDLEQPLGASTIRLNRQDQDAIERLKALGFPEALVLQA 392
Query: 367 FFACNKNEELAANYLL 382
+FAC KNEELAAN+LL
Sbjct: 393 YFACEKNEELAANFLL 408
>gi|323509241|dbj|BAJ77513.1| cgd7_4730 [Cryptosporidium parvum]
Length = 341
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 210/389 (53%), Gaps = 56/389 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI ++T++ T +VEV+ + ++ VK I+ + + V A++ LI+ G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E +V++L+K A AA Q +
Sbjct: 59 DVGIKEGERLVVLLSK---------------------GASQKAAESQQNKQNNTSNESNT 97
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + ++++ + S S+ + A++ L+ G LE I I++MG ++R+ V R
Sbjct: 98 NTDPAASATTSNIQAQSGNSDPSIDSRASA-LLTGTELEKTITNIVNMG---FEREQVTR 153
Query: 182 ALRAAYNNPERAVEYLYSG--IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
A+RAA+NNP+RAVEYL SG IPE PVA N NS + A +TSS
Sbjct: 154 AMRAAFNNPDRAVEYLTSGLPIPEN----PVAPNHTNITPVNSNASLN-----AGLTSSE 204
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
DL + LP G+L+ LR +P FQ LR++VQ +P++L +L +G+ N
Sbjct: 205 ------DLSSEQLP---------GNLESLRTNPLFQQLRSVVQQDPRILPELLVRIGQSN 249
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
P++++LI E+Q +F+R++ + +G+ M +IQ+TP+E E++ERL+A+GF
Sbjct: 250 PEILQLITENQEEFIRMME---RTDSDEVGETSQFPMQTTIQLTPQEAESVERLQALGFP 306
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEF 388
R V+E + C KNEELAANYLL++ +F
Sbjct: 307 RNAVIEAYLICEKNEELAANYLLENSADF 335
>gi|393911377|gb|EFO15597.2| UV excision repair protein Rad23 [Loa loa]
Length = 337
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 139/393 (35%), Positives = 196/393 (49%), Gaps = 81/393 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I KT+ SF++E+ P T+ +VK KI +G YP Q LIY GKVL D T+E
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPIECQKLIYNGKVLDDAQTVE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + + FVVIM+ + K+P G A P + P
Sbjct: 61 EVMIDPSKFVVIMIAR-KKPVG------------------------------ATPAESTP 89
Query: 122 TPAPTPAPASASVSSV---SATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
P+ PA+A V++V S T S + L E Q I+ MG + RD
Sbjct: 90 QPSNLQIPAAAQVTTVTPASVTDNSPAAPQNSDGLTPEQ--EETAQAIVAMG---YSRDK 144
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V+RALRA++ N +RAVEYL SGIPE+ ++ G+ ++A
Sbjct: 145 VIRALRASFFNGDRAVEYLCSGIPEEEDL------GGHQESAEH---------------- 182
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
+ G G G LDFLR PQF+ LR +VQ+NP LL ++Q++ +
Sbjct: 183 ---------------EEGERGQGLG-LDFLRQLPQFEQLRELVQSNPALLPQIIQQIAQS 226
Query: 299 NPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL---AGLMPQ-SIQVTPEEREAIERLE 354
NP L+ IQ +Q +F+ L+N G G G ++ AG Q +I VT ER+AI RL+
Sbjct: 227 NPALMEAIQNNQEEFVNLLNNGSVGSGGGGGGRVSPSAGEQRQVAIHVTEAERDAINRLK 286
Query: 355 AMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
+MGF +V+E +FAC+KNE+LAANY+L M E
Sbjct: 287 SMGFPEQLVIEAYFACDKNEDLAANYILARMDE 319
>gi|67621260|ref|XP_667750.1| RAD 23B protein [Cryptosporidium hominis TU502]
gi|54658903|gb|EAL37511.1| RAD 23B protein - channel catfish [Cryptosporidium hominis]
Length = 341
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 208/389 (53%), Gaps = 56/389 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI ++T++ T +VEV+ + ++ VK I+ + + V A++ LI+ G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E +V++L+K A AA Q +
Sbjct: 59 DVGIKEGERLVVLLSK---------------------GASQKAAESQQNKQNNTSNESNT 97
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + ++++ + S S+ + A++ L+ G LE I I++MG ++R+ V R
Sbjct: 98 NTDPAASATTSNIQTQSGNSDPSIDSRASA-LLTGTELEETITNIVNMG---FEREQVTR 153
Query: 182 ALRAAYNNPERAVEYLYSG--IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
A+RAA+NNP+RAVEYL SG IPE PVA P N NS + P+ SS
Sbjct: 154 AMRAAFNNPDRAVEYLTSGLPIPEN----PVAPNPTNITPVNSNASLNAGLTPSEELSS- 208
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
+ LP G+L+ LR +P FQ LR++VQ +P++L +L +G+ N
Sbjct: 209 ----------EQLP---------GNLESLRTNPLFQQLRSVVQQDPRILPELLVRIGQSN 249
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
P++++LI E+Q +F+R++ + +G+ M +IQ+TP+E E++ERL+A+GF
Sbjct: 250 PEILQLITENQEEFIRMME---RTDSDEVGETSQFPMQTTIQLTPQEAESVERLQALGFP 306
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEF 388
R V+E + C KNEELAANYLL++ +F
Sbjct: 307 RNAVIEAYLICEKNEELAANYLLENSADF 335
>gi|331230142|ref|XP_003327736.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306726|gb|EFP83317.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 151/442 (34%), Positives = 216/442 (48%), Gaps = 93/442 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL+ F ++V+P TV +K I+ QG + QQ LI+ GKVL DD T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ V E F V+ML K K TAPT P PA+ P+ A A +T P
Sbjct: 58 QIGVKEKDFFVVMLIKPK----------TAPT------VPAPASVPSGAGAAASTSATAP 101
Query: 122 TP----------APTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
TP + T APAS + SA + + G + G+NL+ I +I++ G
Sbjct: 102 TPAAAQPATATPSSTTAPASTDADNASAATPAS--GTQDPGFLVGSNLQKTIDEIVN--G 157
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV-QPVARAPGNG------------- 217
+ R+ V +A+RAA+NNP+RAVEYL +GIP + P P N
Sbjct: 158 MGFPREQVTKAMRAAFNNPDRAVEYLMTGIPAGLDAPAPPVTLPTNAPSTVNPSATTPSA 217
Query: 218 -------------QAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGS 264
AA Q QP + A P A P Q +P + +
Sbjct: 218 AAAPAAGSRNLFEAAAEHVAQQRQPGEAAL-----PTAEPAQAGAQSIPT-------SRA 265
Query: 265 LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG 324
L+ LRN+PQ LR +VQ NP LLQP LQ+LG+ NP L+ + + + + E +G
Sbjct: 266 LEALRNNPQMIQLRQLVQQNPNLLQPFLQQLGQSNPNLLTQLTSNPTLLMSFLAEGAEGL 325
Query: 325 EGNLG---------------DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFA 369
+ + DQ Q +QV+ EER+AIERL +GF+R +V++ +FA
Sbjct: 326 DDDSSLPPGMMGGAGAGGPEDQT-----QYVQVSQEERDAIERLVGLGFERQLVVQAYFA 380
Query: 370 CNKNEELAANYLLDH-MHEFED 390
C+KNEE+AANYL++H +FE+
Sbjct: 381 CDKNEEMAANYLIEHGFDDFEE 402
>gi|61557236|ref|NP_001013208.1| UV excision repair protein RAD23 homolog A [Rattus norvegicus]
gi|54038637|gb|AAH84695.1| RAD23 homolog A (S. cerevisiae) [Rattus norvegicus]
Length = 351
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 196/369 (53%), Gaps = 68/369 (18%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT AP+ S P P A PA+ + P P
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGTPAPPEASPTAAPEPSTPFPPA-PASG-------MSHPPP 116
Query: 124 APTPAPASASVSSVSATSESGVYG-----------HAASNLVAGNNLEGAIQQILDMGGG 172
+ +S+ S+ + + ES AAS LV G+ E + +I+ MG
Sbjct: 117 SNREDKSSSEESATTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG-- 174
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
++R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QP
Sbjct: 175 -YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQP 222
Query: 233 APVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPML 292
A AG L+FLR+ PQFQ +R ++Q NP LL +L
Sbjct: 223 A------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALL 258
Query: 293 QELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVT 343
Q+LG++NPQL++ I HQ F++++NEP V+G G LG++ + IQVT
Sbjct: 259 QQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGALGEEAPQM--NYIQVT 316
Query: 344 PEEREAIER 352
P+E+EAIER
Sbjct: 317 PQEKEAIER 325
>gi|327292408|ref|XP_003230903.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
gi|326466939|gb|EGD92392.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
Length = 365
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 155/394 (39%), Positives = 210/394 (53%), Gaps = 71/394 (18%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
VK KI T +G +PA+QQ LIY GK+L+DD T+E + E F+V M++K K +
Sbjct: 11 VKEKIATEKG---WPASQQKLIYSGKILQDDNTVESYNIEEKGFIVCMVSKPKAAPSASA 67
Query: 87 TRSTAPTKAPQS-------SAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSA 139
S+ A S SAPT A+ PA+ TPA TP+PA +
Sbjct: 68 ASSSQTPAAAPSAPAPITPSAPTRASAPASE-----------TPA-TPSPAGGA------ 109
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
SG + S L+ GN + AI Q+L MG + R + RA+RAAY NP+RA+EYL +
Sbjct: 110 --SSGATFNDPSALLMGNQGQEAITQMLAMG---FSRGDIDRAMRAAYFNPDRAIEYLLN 164
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGA 259
GIPE++E + + G AA T +P+ A V S L+LF Q G
Sbjct: 165 GIPEESEREAPSAPAAAGGAARPSTTSEEPSD-AQVQES------LNLFEQAAAQASGGG 217
Query: 260 A---------------------GAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
GSL+FLRN+P FQ LR +VQ PQ+L+P+LQ++G
Sbjct: 218 GARGRGAGAGAGAGAGAGETAGSLGSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAG 277
Query: 299 NPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEEREAIERLEAM 356
NPQL +LI ++Q FL+L++E V D L P QSI VT EER+AIERL +
Sbjct: 278 NPQLAQLIGQNQEQFLQLLSEDV--------DDETQLPPGAQSISVTEEERDAIERLCRL 329
Query: 357 GFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
GF R V++ +FAC+KNEELAAN+L D E E+
Sbjct: 330 GFSRDSVIQAYFACDKNEELAANFLFDQPDENEE 363
>gi|154292520|ref|XP_001546834.1| nucleotide excision repair protein RAD23 [Botryotinia fuckeliana
B05.10]
gi|347836511|emb|CCD51083.1| similar to UV excision repair protein (RadW) [Botryotinia
fuckeliana]
Length = 376
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 157/412 (38%), Positives = 215/412 (52%), Gaps = 70/412 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E +P + V DVK KI +G + A+QQ LIY GK+L+D TLE
Sbjct: 1 MKLTFKDLKQQKFVLEAEPTELVSDVKEKIFKEKG---WEASQQKLIYSGKILQDANTLE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT----APQTAVPI 117
+ E F+V M+TK K S T AP S+A TAVP
Sbjct: 58 SYHIEEKGFIVCMITKPKAAPAASSAPKAPSTPAPASAATPAPPAAPAHSSSTSNTAVPA 117
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
TP+PA AS+ + AT + G L G I ++ MG ++R
Sbjct: 118 --------TPSPAGASIPAPQATPSNETTG-----LAMGAERSAQIAEMESMG---FERS 161
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQ--AEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
+ A+RAA+ N ERA+EYL +GIPE+ E QP AP QA++ P
Sbjct: 162 QIEAAMRAAFYNSERAIEYLLNGIPERLLQEQQPTPAAPAAVQASSPP------------ 209
Query: 236 TSSGPNANPLDLFPQGLPDVGS-GAAGAG--------------------SLDFLRNSPQF 274
++G +P+DLF Q + G+ G A G +LDFLRN+PQF
Sbjct: 210 -AAGGEDDPVDLF-QAAANAGNRGGAARGRPGVDPLGGAGAGAAAGGLGNLDFLRNNPQF 267
Query: 275 QVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAG 334
Q LR +VQ PQ+L+P+LQ++G NPQL LI +H FL+L++E D A
Sbjct: 268 QQLRQVVQQQPQMLEPILQQVGAGNPQLATLISQHPEQFLQLLSEN--------ADDDAP 319
Query: 335 LMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
L P Q+I+VTPEER+AIERL +GF+R ++ +FAC+KNEELAAN+L +
Sbjct: 320 LPPGAQAIEVTPEERDAIERLCRLGFNREQAIQAYFACDKNEELAANFLFEQ 371
>gi|331250500|ref|XP_003337858.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316848|gb|EFP93439.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 153/443 (34%), Positives = 217/443 (48%), Gaps = 95/443 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTL+ F ++V+P TV +K I+ QG + QQ LI+ GKVL DD T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ V E F V+ML K K TAPT P PA+ P+ A A +T P
Sbjct: 58 QIGVKEKDFFVVMLIKPK----------TAPT------VPAPASVPSGAGAAASTSATAP 101
Query: 122 TP----------APTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
TP + T APAS + SA + + G + G+NL+ I +I++ G
Sbjct: 102 TPAAAQPATATPSSTTAPASTDADNASAATPAS--GTQDPGFLVGSNLQKTIDEIVN--G 157
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAPGNG------------ 217
+ R+ V +A+RAA+NNP+RAVEYL +GIP A PV P N
Sbjct: 158 MGFPREQVTKAMRAAFNNPDRAVEYLMTGIPAGLDAPAAPVT-LPTNAPSTVNPSATTPS 216
Query: 218 --------------QAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
AA Q QP + A P A P Q +P +
Sbjct: 217 AAAAPAAGSRNLFEAAAEHVAQQRQPGEAAL-----PTAEPAQAGAQSIPT-------SR 264
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
+L+ LRN+PQ LR +VQ NP LLQP LQ+LG+ NP L+ + + + + E +G
Sbjct: 265 ALEALRNNPQMIQLRQLVQQNPNLLQPFLQQLGQSNPNLLTQLTSNPTLLMSFLAEGAEG 324
Query: 324 GEGN---------------LGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFF 368
+ + DQ Q +QV+ EER+AIERL +GF+R +V++ +F
Sbjct: 325 LDDDPSLPPGMMGGAGAGGPEDQT-----QYVQVSQEERDAIERLVGLGFERQLVVQAYF 379
Query: 369 ACNKNEELAANYLLDH-MHEFED 390
AC+KNEE+AANYL++H +FE+
Sbjct: 380 ACDKNEEMAANYLIEHGFDDFEE 402
>gi|444725253|gb|ELW65827.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 367
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 71/406 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KT + +F +++ PE+TV +K KIE+ +G D +P Q LIY G++LKDDT L+
Sbjct: 1 MQVTLKTPQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVEDQKLIYAGEILKDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAP-TPAATPATAPQTAVPISTE 120
E + E V+ S T SS+P TPA+TPA + S+E
Sbjct: 61 EYNIEEKDSVL----------------SKPATDFLVSSSPGTPASTPAAVTPASRRTSSE 104
Query: 121 PTPAPTPAPASASVSSVSA--TSESGVYGHA-ASNLVA--------GNNLEGAIQQILDM 169
P P P + + V+ TS G A ASN++A G + + + +I+ M
Sbjct: 105 PAPEQEQPPEELADAPVATGPTSTGWTAGDASASNMLAGATGALTPGQSYQDMVSEIMSM 164
Query: 170 GGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQP 229
G +++ V+ ALRA++N+P RAVEYL +GIP VA P +AA+ M P
Sbjct: 165 G---YEQAQVIAALRASFNDPHRAVEYLLTGIPGDRGSDTVADLP---RAAS----MGAP 214
Query: 230 TQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQ 289
PA TS+ ++ P+G P L+FL+N QFQ LR ++ NP LL
Sbjct: 215 PSPASATSTAMASS-----PEGTP-----------LEFLQNQLQFQQLRQTIRQNPSLLP 258
Query: 290 PMLQELGKQNPQLVRLIQEHQADFLRLINEPV-------------QGGEGNLGDQLAGLM 336
+LQ+LG + P L++LI ++Q F+++++EPV G G A
Sbjct: 259 MLLQQLGLRGPHLLQLISQYQEHFIQMLHEPVPEAGGQSGVGGAGDAGTAQAGHGQANY- 317
Query: 337 PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
++VTP+EREAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 318 ---VRVTPQEREAIERLKALGFPEGLVIQAYFACEKNETLAANFLL 360
>gi|297286975|ref|XP_001085658.2| PREDICTED: UV excision repair protein RAD23 homolog B [Macaca
mulatta]
Length = 406
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 144/433 (33%), Positives = 220/433 (50%), Gaps = 76/433 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ SF +++ PE+TV +K KIE+ + + P A Q LIY G++L DD L+
Sbjct: 1 MQVTLKTLQPQSFKIDIDPEETVKALKEKIESEKAKEASPVAGQKLIYAGEILNDDAALK 60
Query: 62 ENKVAENSFVV--IMLTKNKRPT--GEGSTRSTAPTKAPQSS---------APTPAA--- 105
E K+ E FVV +M+TK K + +T+ +AP + APTP
Sbjct: 61 EYKIDEKIFVVVMVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVLALA 120
Query: 106 ---TPATAPQTAVPISTEPTPA-----------PTPAPASASVSSVSAT----SESGVYG 147
TPA +V +S+EP PA P P + ++S T S S ++
Sbjct: 121 TTFTPAFITPVSVTVSSEPAPASATKQKKAAEKPAETPVATRLTSTDCTLXDSSWSNLFE 180
Query: 148 HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP---EQ 204
A S LV G E + +I MG ++ + V+ A RA++ N +RAVE L GIP Q
Sbjct: 181 DATSALVTGQPYENMVTEITPMG---YEXEQVIAAPRASFKNLDRAVECLVMGIPGVKXQ 237
Query: 205 AEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGS 264
V P QAA+ T +PQ + A V ++ + ++G
Sbjct: 238 VVVDP-------HQAAS--TGVPQSSTLAAVAATTTATT-------------TTSSGXHP 275
Query: 265 LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG 324
L+FL N PQFQ +R ++Q N LL +LQ +G +NPQL++ I +H+ F++++NEPV
Sbjct: 276 LEFLWNQPQFQQMRQIIQQNTSLLPALLQXIGGENPQLLQQISQHKEHFIQMLNEPVXEA 335
Query: 325 E----------GNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNE 374
+ G + + G M IQVTP+E+EAIER G +V++ +FAC KN+
Sbjct: 336 DGRGGGGGGGSGGIAEPGNGPM-NYIQVTPQEKEAIER---XGIPEGLVIQAYFACEKNK 391
Query: 375 ELAANYLLDHMHE 387
LAA++LL +
Sbjct: 392 NLAADFLLQQTFD 404
>gi|378730563|gb|EHY57022.1| UV excision repair protein Rad23 [Exophiala dermatitidis
NIH/UT8656]
Length = 405
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 214/426 (50%), Gaps = 58/426 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P DT+ VK K+ +G D A+QQ LIY GKVL D T+E
Sbjct: 1 MKLSFRDLKQQKFTIEAEPTDTIAQVKEKVAAEKGWD---ASQQKLIYSGKVLADANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E F+V M++K K +++ P+ +S+ TPAA A S +P
Sbjct: 58 SYKIEEKGFIVCMISKPKA----AASKPKEPSTPAATSSSTPAAPAAPPASAPAAPSEQP 113
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ PTPA ++ + S T G + S + GN E I+++ MG G R + R
Sbjct: 114 S-TPTPAQSATAAPSTDTTGAGGF--NDPSAFLMGNRNESTIREMESMGFG---RPEIER 167
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP-------AP 234
ALRAAY NP+RA+EYL SGIPE + Q P G A P A
Sbjct: 168 ALRAAYFNPDRAIEYLLSGIPENIQAQQRQATPAAGTGAQDTPASPPAAAAAAAAPTQAQ 227
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAG---------------------------SLDF 267
T++ P++LF G G +L+F
Sbjct: 228 ETNTSSGDEPINLFEAAAQAGQQGRGTGGGLPAGLGAALGARAGGIPAGAGGQGAVNLEF 287
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN 327
LRNSP FQ LR +VQ P +L+P LQ++ + NPQL ++I + FL+L+ E Q G+G
Sbjct: 288 LRNSPHFQQLRQLVQQQPAMLEPFLQQVAEGNPQLAQMISLNPDQFLQLLAED-QEGDG- 345
Query: 328 LGDQLAGLMP---QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
G +P +I VTPEER+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 346 ------GPLPPGSTAISVTPEERDAIERLCGLGFSRDQVIQAYFACDKNEELAANFLFEQ 399
Query: 385 MHEFED 390
+ E+
Sbjct: 400 PEDDEE 405
>gi|406602239|emb|CCH46169.1| putative DNA repair protein RAD23-3 [Wickerhamomyces ciferrii]
Length = 394
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 144/422 (34%), Positives = 215/422 (50%), Gaps = 70/422 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ K K +E++P +TV K K+ V+G +V Q +Y GKVL+DD T+E
Sbjct: 1 MQVIFKDFKKEKIPIELEPTETVLQAKEKLAQVKGVEV---KQLKFVYSGKVLQDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPI--ST 119
K+ + V+ M++K + PT A + P PAA P + P+ ST
Sbjct: 58 STKIKADDQVIFMISK---------VAAKKPTPAASTPTPAPAAQPTQPTAQSAPVQPST 108
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PAP P+ SA + ++G + AS G+ E AI I++MG ++R V
Sbjct: 109 RTVPAPAPSSQSAQPTPSQQPEQAGDFD--ASTFATGSAREKAIANIMEMG---YERPQV 163
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQP----------VARAPGNGQAANSPTQMPQP 229
+ALRAA+NNP+RAVEYL +GIPEQ + Q V + + +N+ QP
Sbjct: 164 EQALRAAFNNPDRAVEYLLTGIPEQFQQQAQQSQPQPPTAVEESGEQTEGSNTGATATQP 223
Query: 230 TQPAPVTSSGPNANPLDLFPQ------GLPDVGS---------GAAGAGSLDFLRNSPQF 274
+ P+ T A DLF G P GS GA G LD +R
Sbjct: 224 SAPSG-TEEHSTAESGDLFAAAAAAAGGNPGSGSSPGASHRTGGAPSGGGLDQIRE---- 278
Query: 275 QVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLI----NEPVQGGEGNLGD 330
+V+ NP++L+P+L++L +Q PQL LIQ++ +F+ +I NE GEG LG
Sbjct: 279 -----IVRTNPEMLEPLLEQLSQQYPQLNGLIQQNPEEFINMILNGVNEDELSGEG-LGT 332
Query: 331 QLAGLMPQS-------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL- 382
++A PQ+ + +T E++ AI RL +GF+ + ++V+FAC+KNEELAAN L
Sbjct: 333 EVA---PQAGEDGTVEVPITEEDQAAINRLVELGFESNLAIQVYFACDKNEELAANILFN 389
Query: 383 DH 384
DH
Sbjct: 390 DH 391
>gi|32402044|gb|AAP81008.1| RAD23-like protein B [Homo sapiens]
Length = 337
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 175/311 (56%), Gaps = 46/311 (14%)
Query: 89 STAPTKAPQSSAPTPAAT-----PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSES 143
S P A SS P PA+ PA P P++T PT A+ S+ +S S
Sbjct: 53 SITPASATASSEPAPASAAKQEKPAEKP-AETPVATSPT---------ATDSTSGDSSRS 102
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 103 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 159
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P QAA+ T +PQ + A ++ + ++G
Sbjct: 160 DRESQAVVDPP---QAAS--TGVPQSSAVAAAAATTTAT------------TTTTSSGGH 202
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 203 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 262
Query: 324 G----------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKN 373
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KN
Sbjct: 263 AGGQGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKN 321
Query: 374 EELAANYLLDH 384
E LAAN+LL
Sbjct: 322 ENLAANFLLQQ 332
>gi|312095801|ref|XP_003148472.1| UV excision repair protein Rad23 containing protein [Loa loa]
Length = 341
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 146/401 (36%), Positives = 204/401 (50%), Gaps = 83/401 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVF-----------DVKMKIETVQGSDVYPAAQQMLIYQ 50
M I KT+ SF++E+ P TV+ +VK KI +G YP Q LIY
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTVYFWSNVVLPKIGEVKAKIAEEKGEVEYPIECQKLIYN 60
Query: 51 GKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATA 110
GKVL D T+EE + + FVVIM+ + K+P G ST PQ P+ PA A
Sbjct: 61 GKVLDDAQTVEEVMIDPSKFVVIMIAR-KKPVGATPAEST-----PQ---PSNLQIPAAA 111
Query: 111 PQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMG 170
T V PAS + +S +A SG+ S+ + E A Q I+ MG
Sbjct: 112 QVTTV------------TPASVTDNSPAAPQNSGI-----SDGLTPEQEETA-QAIVAMG 153
Query: 171 GGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPT 230
+ RD V+RALRA++ N +RAVEYL SGIPE+ ++ G+ ++A
Sbjct: 154 ---YSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL------GGHQESAEH-------- 196
Query: 231 QPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQP 290
+ G G G LDFLR PQF+ LR +VQ+NP LL
Sbjct: 197 -----------------------EEGERGQGLG-LDFLRQLPQFEQLRELVQSNPALLPQ 232
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL---AGLMPQ-SIQVTPEE 346
++Q++ + NP L+ IQ +Q +F+ L+N G G G ++ AG Q +I VT E
Sbjct: 233 IIQQIAQSNPALMEAIQNNQEEFVNLLNNGSVGSGGGGGGRVSPSAGEQRQVAIHVTEAE 292
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
R+AI RL++MGF +V+E +FAC+KNE+LAANY+L M E
Sbjct: 293 RDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 333
>gi|317138690|ref|XP_001817078.2| UV excision repair protein rhp23 [Aspergillus oryzae RIB40]
gi|391863231|gb|EIT72542.1| nucleotide excision repair factor NEF2, RAD23 component
[Aspergillus oryzae 3.042]
Length = 378
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 145/410 (35%), Positives = 220/410 (53%), Gaps = 54/410 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++ +P +TV VK KI +G +V Q LIY GK+L+DD +E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K S+ + P++AP TP+ + P +
Sbjct: 58 SYNIEEKGFIVCMVSKPK-----ASSSTATPSQAPS----TPSRAATSTPAAPPAPAPST 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ T PA+ S ++ + S++ + S L++G+ E I + MG + RD + R
Sbjct: 109 NASATAPPATPSPAAATQPSDAAF--NDPSALLSGSQGEAVISHMESMG---FPRDDINR 163
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP RA+EYL +GIPE + + + A + PQP P S+G N
Sbjct: 164 AMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATAT-AASPQP----PAASAGGN 218
Query: 242 A-------NPLDLF-----------PQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQA 283
A P++LF P G + G +LDFLRN+P FQ LR +VQ
Sbjct: 219 APATTGGEEPVNLFEAAAQAGTQEGPHGARSGSAAGEGLPNLDFLRNNPHFQQLRQLVQQ 278
Query: 284 NPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP---QSI 340
PQ+L+P+LQ++ NPQ+ +LI +++ FL+L++E EG+ G +P I
Sbjct: 279 QPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE-----EGD------GALPPGTHQI 327
Query: 341 QVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
VT EER+AIERL +GF R +V+E +FAC+KNEELAAN+L ++ + ED
Sbjct: 328 HVTEEERDAIERLCRLGFSRDMVIEAYFACDKNEELAANFLFENTDDPED 377
>gi|148670317|gb|EDL02264.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|148670318|gb|EDL02265.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 344
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 166/318 (52%), Gaps = 53/318 (16%)
Query: 89 STAPTKAPQSSAPTPAAT-----PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSES 143
ST P SS P PA PA P P+ T P PA S+ +S S
Sbjct: 53 STTPASTTASSEPAPAGATQPEKPAEKP-AQTPVLTSPAPAD---------STPGDSSRS 102
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 103 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 159
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 160 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 202
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 203 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 262
Query: 324 G-----------------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEV 366
G + + +G M IQVTP+E+EAIERL+A+GF +V++
Sbjct: 263 AGGQGGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQA 321
Query: 367 FFACNKNEELAANYLLDH 384
+FAC KNE LAAN+LL
Sbjct: 322 YFACEKNENLAANFLLQQ 339
>gi|440633766|gb|ELR03685.1| UV excision repair protein Rad23 [Geomyces destructans 20631-21]
Length = 397
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 156/409 (38%), Positives = 214/409 (52%), Gaps = 46/409 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P + + DVK KIE +G + AAQQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPTELISDVKAKIEKEKG---WEAAQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS---APTPAATPATAPQTAVPIS 118
K+ E F+V M++K K + + A S+ P P + T +P
Sbjct: 58 SYKIEEKGFIVCMVSKPKPAPAAAAPKEPATPAPAASTSTPVPPPVVASNSGTNTGIP-- 115
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
TP+PA A VS+ A + + + S L G A+ + MG ++R +
Sbjct: 116 ------STPSPAGAGVSATPAPAPAQPQFNDPSALTIGAQRAEAVANLESMG---FERAS 166
Query: 179 VVRALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ A+RAA+ NP+RAVEYL +GIPE Q E +P A A S Q P P QPA
Sbjct: 167 IDAAMRAAFFNPDRAVEYLLNGIPEDLQREQRPAAPQAAAPAAGASDAQSPPPAQPA-TG 225
Query: 237 SSGPN-------------------ANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQ 275
G N ANP G+ A A G+LD+LRN+PQFQ
Sbjct: 226 DEGINLFEAAAQAGRGGAGAGARGANPFAAAAGAGAGAGAAGAQAGLGNLDWLRNNPQFQ 285
Query: 276 VLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGL 335
LR +VQ PQ+L+P+LQ +G NPQL +LI +H FL+L+ E EG GD LA
Sbjct: 286 QLRQVVQQQPQMLEPILQSVGAGNPQLAQLIGQHPEQFLQLLGE-----EGEEGDALAPP 340
Query: 336 MPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
I VTPEE EAIERL +GF+R + ++ +FAC+KNEELAAN+L +
Sbjct: 341 GATQISVTPEESEAIERLCGLGFERDLAIQAYFACDKNEELAANFLFEQ 389
>gi|347800665|ref|NP_001231653.1| UV excision repair protein RAD23 homolog B isoform 3 [Homo sapiens]
gi|119579420|gb|EAW59016.1| RAD23 homolog B (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 337
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 174/311 (55%), Gaps = 46/311 (14%)
Query: 89 STAPTKAPQSSAPTPAAT-----PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSES 143
S P A SS P PA+ PA P P++T PT A+ S+ +S S
Sbjct: 53 SITPASATASSEPAPASAAKQEKPAEKP-AETPVATSPT---------ATDSTSGDSSRS 102
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 103 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 159
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P QAA+ T PQ + A ++ + ++G
Sbjct: 160 DRESQAVVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGH 202
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 203 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 262
Query: 324 G----------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKN 373
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KN
Sbjct: 263 AGGQGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKN 321
Query: 374 EELAANYLLDH 384
E LAAN+LL
Sbjct: 322 ENLAANFLLQQ 332
>gi|50550853|ref|XP_502899.1| YALI0D16401p [Yarrowia lipolytica]
gi|49648767|emb|CAG81090.1| YALI0D16401p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 144/399 (36%), Positives = 213/399 (53%), Gaps = 56/399 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + ++ K + V+V+P DTV +K K +G D Y Q +IY GK+L + T++E
Sbjct: 1 MLVKLRDTKRQQWTVDVEPSDTVETLKTK--NAEGKD-YGVGDQKMIYSGKILANTTSIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--TPATAPQTAVPIS- 118
+ E++F++ M++K K + + AP A ++A A TPAT+ A P +
Sbjct: 58 SLNLKEDAFIICMISKPKVKAAAAAPAAAAPVAAAPAAAEPAVAPVTPATSRSVATPGAP 117
Query: 119 ------TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGG 172
T PT A AS + +ESG A + + AI ++DMG
Sbjct: 118 TNSGNVVGNTETPTTGGADASTTG-DIGAESGPAASATAAVTT------AINNMVDMG-- 168
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
+ RD V A+RAAYNNPERAVEYL +GIP+ G+ A+
Sbjct: 169 -YPRDQVEAAMRAAYNNPERAVEYLLTGIPDHV----------IGEEADDDV-------- 209
Query: 233 APVTSSGPNANP-LDLFPQGLPDVGSGAAGA---GSLDFLRNSPQFQVLRAMVQANPQLL 288
P +N DLF + + G GA+ A +LDFLR++PQF +R MVQ P LL
Sbjct: 210 -------PESNTDTDLFAEAVAQQGQGASVAPNTSALDFLRDNPQFIEMRRMVQQQPHLL 262
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEERE 348
+P++Q+L NPQL LI ++ FL L+ E ++ G G + + IQVTPEE +
Sbjct: 263 EPLIQQLAASNPQLAALITQNSEAFLHLLGEGLEEGSGGVPEGTT-----EIQVTPEESD 317
Query: 349 AIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
AIERL A+GF+R +V++ +FAC+KNEE+ ANYLL+H ++
Sbjct: 318 AIERLAALGFERNLVIQAYFACDKNEEVTANYLLEHGYD 356
>gi|149037168|gb|EDL91699.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
gi|149037169|gb|EDL91700.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
Length = 343
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 167/312 (53%), Gaps = 42/312 (13%)
Query: 89 STAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
ST P SS P P T AT P+ + +PAPA S+ +S S ++
Sbjct: 53 STTPASTTASSEPAP--TGATQPEKPAEKPAQTPVLTSPAPAD---STPGDSSRSNLFED 107
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 108 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 164
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFL 268
V P P V++ P + + + +G L+FL
Sbjct: 165 AVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGHPLEFL 207
Query: 269 RNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG---- 324
RN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 208 RNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQG 267
Query: 325 ------------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNK 372
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC K
Sbjct: 268 GGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 326
Query: 373 NEELAANYLLDH 384
NE LAAN+LL
Sbjct: 327 NENLAANFLLQQ 338
>gi|60422770|gb|AAH90351.1| Rad23b protein [Rattus norvegicus]
Length = 333
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 167/312 (53%), Gaps = 42/312 (13%)
Query: 89 STAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
ST P SS P P T AT P+ + +PAPA S+ +S S ++
Sbjct: 43 STTPASTTASSEPAP--TGATQPEKPAEKPAQTPVLTSPAPAD---STPGDSSRSNLFED 97
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 98 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 154
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFL 268
V P P V++ P + + + +G L+FL
Sbjct: 155 AVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGHPLEFL 197
Query: 269 RNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG---- 324
RN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 198 RNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQG 257
Query: 325 ------------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNK 372
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC K
Sbjct: 258 GGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 316
Query: 373 NEELAANYLLDH 384
NE LAAN+LL
Sbjct: 317 NENLAANFLLQQ 328
>gi|83764932|dbj|BAE55076.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 403
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 144/411 (35%), Positives = 220/411 (53%), Gaps = 54/411 (13%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+ + VK LK F ++ +P +TV VK KI +G +V Q LIY GK+L+DD +
Sbjct: 25 VFNVAVKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAI 81
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + E F+V M++K K S+ + P++AP TP+ + P +
Sbjct: 82 ESYNIEEKGFIVCMVSKPK-----ASSSTATPSQAPS----TPSRAATSTPAAPPAPAPS 132
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+ T PA+ S ++ + S++ + S L++G+ E I + MG + RD +
Sbjct: 133 TNASATAPPATPSPAAATQPSDAAF--NDPSALLSGSQGEAVISHMESMG---FPRDDIN 187
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RA+RAA+ NP RA+EYL +GIPE + + + A + PQP P S+G
Sbjct: 188 RAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATAT-AASPQP----PAASAGG 242
Query: 241 NA-------NPLDLF-----------PQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
NA P++LF P G + G +LDFLRN+P FQ LR +VQ
Sbjct: 243 NAPATTGGEEPVNLFEAAAQAGTQEGPHGARSGSAAGEGLPNLDFLRNNPHFQQLRQLVQ 302
Query: 283 ANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP---QS 339
PQ+L+P+LQ++ NPQ+ +LI +++ FL+L++E EG+ G +P
Sbjct: 303 QQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE-----EGD------GALPPGTHQ 351
Query: 340 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
I VT EER+AIERL +GF R +V+E +FAC+KNEELAAN+L ++ + ED
Sbjct: 352 IHVTEEERDAIERLCRLGFSRDMVIEAYFACDKNEELAANFLFENTDDPED 402
>gi|194698296|gb|ACF83232.1| unknown [Zea mays]
gi|413926353|gb|AFW66285.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 185
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 129/208 (62%), Gaps = 33/208 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKGT F++ V+P DT+ VK IE +QG D YP QQ+LI+ GKVLKD++TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 62 ENKVAENSFVVIML----------TKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP 111
ENKV E+ F+V+ML T + + + +TR P +APQ AP P P T
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQHSNTPATRQAPPLEAPQ-QAPQPPVAPIT-- 117
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+++P P AP + +AASNL++G N++ I Q+++MGG
Sbjct: 118 ------TSQPEGLPAQAP--------------NTHDNAASNLLSGRNVDTIINQLMEMGG 157
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYS 199
G+WD+D V RALRAAYNNPERAVEYLYS
Sbjct: 158 GSWDKDKVQRALRAAYNNPERAVEYLYS 185
>gi|320041049|gb|EFW22982.1| UV excision repair protein [Coccidioides posadasii str. Silveira]
gi|392865203|gb|EAS30978.2| UV excision repair protein Rad23 [Coccidioides immitis RS]
Length = 371
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 142/397 (35%), Positives = 205/397 (51%), Gaps = 47/397 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +T+ +K KI +G D AAQQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K P P S P + P P
Sbjct: 58 SYNIEEKGFIVCMVSK--------------PKAQPAPSTPAGPSQTPATPAAPSSTPAAP 103
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ A ++ + + + +G + S L+ G E A+QQ+ MG + RD + R
Sbjct: 104 SAPAPATNAPSAPPATPSPATAGATFNDPSALLMGPQSETAVQQMEAMG---FARDDIQR 160
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RA+EYL SGIP+ AE + + A S P TQPA T S
Sbjct: 161 AMRAAFFNPDRAIEYLLSGIPDHAEQEAARQQ--ARATAPSNAAAPASTQPAANTES--- 215
Query: 242 ANPLDLFPQGLPDVGSGAAGA------------GSLDFLRNSPQFQVLRAMVQANPQLLQ 289
P++LF G +L+FLRN+P FQ LR +VQ PQ+L+
Sbjct: 216 EEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLNNLEFLRNNPHFQQLRQLVQQQPQMLE 275
Query: 290 PMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEER 347
P+LQ++G NPQL +LI ++Q FL+L++E + D A L P +I VT EER
Sbjct: 276 PILQQVGAGNPQLAQLIGQNQEQFLQLLSEDI--------DDDAQLPPGAHAISVTEEER 327
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 328 DAIERLCRLGFSRDAVIQAYFACDKNEELAANFLFEQ 364
>gi|291223551|ref|XP_002731773.1| PREDICTED: protein RAD23 repair 23 (2L942)-like [Saccoglossus
kowalevskii]
Length = 601
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 137/401 (34%), Positives = 200/401 (49%), Gaps = 32/401 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F VE++P TV D+K K+E V+G D +PAA Q LIY G++L DD +
Sbjct: 1 MLITLKTLQQQTFKVEIEPTKTVKDLKAKVEEVRGKDGFPAAGQKLIYAGRILADDKLIS 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ ++E +FVV+M+TK K ST + P AP A P + P
Sbjct: 61 DYNMSEENFVVVMVTKPKAAPKTESTVESKPATAPSQPAEKPKEEKKEETKEEKIDDKPP 120
Query: 122 T-PAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T A +A ++ ++TS + A S L+ G E + ++++MG ++RD VV
Sbjct: 121 TESASASTETAAGTTTTASTSLASTLSAAESTLLTGAAYENVVAELMNMG---YERDPVV 177
Query: 181 RALRAAYNNPERAVEYLYSGIPEQA-EVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
RALRAA+NNP+RAV+YL SGIPE Q + + P PA S
Sbjct: 178 RALRAAFNNPDRAVDYLLSGIPESVLAEAEAPAPAAAEQPEPAAARTESPATPA-TGGST 236
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGS------LDFLRNSPQFQVLRAMVQANPQLLQPMLQ 293
SG + G L FLR PQFQ +R ++Q NP LL +LQ
Sbjct: 237 TTIAATTPATTPATTAASGTSPLGGQSEEDPLAFLREQPQFQQMRQIIQQNPSLLPALLQ 296
Query: 294 ELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS-------------- 339
+LG+ NPQL++LI +HQ F++++N PV G + + G G
Sbjct: 297 QLGQSNPQLLQLINQHQEQFIQMLNNPVGGEQQSGGGGGGGGSGGGAPTSGGQVGTGPGG 356
Query: 340 ---IQVTPEEREAIERLEAMGFDRA---IVLEVFFACNKNE 374
IQVTP+E+EAIER+ A + + I E+ C+ +E
Sbjct: 357 TSYIQVTPQEKEAIERVLAKMYSKCNSDIRYELMKKCHVDE 397
>gi|209879445|ref|XP_002141163.1| UV excision repair protein Rad23 [Cryptosporidium muris RN66]
gi|209556769|gb|EEA06814.1| UV excision repair protein Rad23, putative [Cryptosporidium muris
RN66]
Length = 347
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 121/387 (31%), Positives = 194/387 (50%), Gaps = 49/387 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI V+T++ T ++EV+ TV +K IE A++Q LI+ G++L D T++
Sbjct: 1 MKIKVRTVQNTEHEIEVEDNFTVLQIKQLIEAKNSQ--MTASRQKLIFAGRILGDSQTVQ 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E +V++++K G +S+ ++ T A T P++T
Sbjct: 59 DIGIKEGERLVVLVSK-----GAIQQKSSEISQTKNIGNSTSAQT--------TPVTTNT 105
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + Y +AS L+ G LE I I++MG ++R+ V+
Sbjct: 106 GVIPNNC-------------DQNTYESSASALITGTELETTINNIVNMG---FERNQVIA 149
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+NNP+RAVEYL SGIP + + S + Q A T P
Sbjct: 150 AMRAAFNNPDRAVEYLTSGIP----LPGIIIQGQGQGQGQSEVSLSQ----AATTPINPE 201
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
+ ++ SG G+LD LR +P FQ LR +VQ +P++L +L +G+ NP+
Sbjct: 202 MSDINQISTN----ASGDTVTGALDSLRTNPIFQQLRMVVQQDPRILPELLARVGQTNPE 257
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRA 361
+++LI E+Q +F+RL+ G + S+ +T +E EA+ERL+ +GF R
Sbjct: 258 ILQLITENQEEFIRLMERTDSDDIGEING------ATSVYLTQQEAEAVERLQGLGFPRN 311
Query: 362 IVLEVFFACNKNEELAANYLLDHMHEF 388
LE F C KNEELAANYL+++ +F
Sbjct: 312 AALEAFLICEKNEELAANYLIENSADF 338
>gi|303319113|ref|XP_003069556.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240109242|gb|EER27411.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 371
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 142/397 (35%), Positives = 205/397 (51%), Gaps = 47/397 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +T+ +K KI +G D AAQQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K P P S P + P P
Sbjct: 58 SYNIEEKGFIVCMVSK--------------PKAQPAPSTPAGPSQTPATPAAPSSTPATP 103
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ A ++ + + + +G + S L+ G E A+QQ+ MG + RD + R
Sbjct: 104 SAPAPATNAPSAPPATPSPATAGATFNDPSALLMGPQSETAVQQMEAMG---FARDDIQR 160
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RA+EYL SGIP+ AE + + A S P TQPA T S
Sbjct: 161 AMRAAFFNPDRAIEYLLSGIPDHAEQEAARQQ--ARATAPSNAAAPASTQPAANTES--- 215
Query: 242 ANPLDLFPQGLPDVGSGAAGA------------GSLDFLRNSPQFQVLRAMVQANPQLLQ 289
P++LF G +L+FLRN+P FQ LR +VQ PQ+L+
Sbjct: 216 EEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLNNLEFLRNNPHFQQLRQLVQQQPQMLE 275
Query: 290 PMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEER 347
P+LQ++G NPQL +LI ++Q FL+L++E + D A L P +I VT EER
Sbjct: 276 PILQQVGAGNPQLAQLIGQNQEQFLQLLSEDI--------DDDAQLPPGAHAISVTEEER 327
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 328 DAIERLCRLGFSRDAVIQAYFACDKNEELAANFLFEQ 364
>gi|330912967|ref|XP_003296143.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
gi|311331971|gb|EFQ95765.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
Length = 384
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 152/419 (36%), Positives = 215/419 (51%), Gaps = 66/419 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI K LK F +E +P +T+ +K KI+ +G +V QQ LIY GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKAKIQADKGWEV---TQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K + +++ P + AP A TPA A + +
Sbjct: 58 SYNIEEKGFIVCMVSKPK--AAPAAAAASSSRAVPSTPAPVAAQTPAAPSAPAPSSNPQ- 114
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ + S + SG + S L G E AI + MG + R + R
Sbjct: 115 --------NAPATPSPAPAQASGERFNDPSALTMGGEREAAIANMESMG---FARADIDR 163
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RAVEYL +GIPE A Q PT P P ++G
Sbjct: 164 AMRAAFFNPDRAVEYLLTGIPESALQ-----------EQAQQAQARAPTSPTPAGNTGAT 212
Query: 242 A----------NPLDLF-----------PQGLPDVGS-------GAAGAGSLDFLRNSPQ 273
A P++LF P G GS GA A SLDFLRN+PQ
Sbjct: 213 AAPANAPSGADEPMNLFEAAAQAANRDRPSGGQRGGSAPGATGGGALNANSLDFLRNNPQ 272
Query: 274 FQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLA 333
FQ LR +VQ PQ+L+P+LQ++G NPQL ++I ++ FL+L+ E D+ A
Sbjct: 273 FQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIAQNPEQFLQLLAEDA--------DEDA 324
Query: 334 GLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
L P Q+I VT +EREAIERL +GF+R +V++ +FAC+KNEELAAN+L D + +D
Sbjct: 325 PLPPGAQAISVTEDEREAIERLCRLGFERDLVIQAYFACDKNEELAANFLFDQPDDADD 383
>gi|240273069|gb|EER36592.1| pre-mRNA-splicing factor cwc24 [Ajellomyces capsulatus H143]
Length = 826
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 154/407 (37%), Positives = 222/407 (54%), Gaps = 54/407 (13%)
Query: 9 LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAEN 68
LK F +E +P +TV VK KI +G DV AQQ LIY GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 69 SFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPA 128
F+V M++K P ST + ++AP + AP A+TPA A + P++++ T P+PA
Sbjct: 505 GFIVCMVSK---PKPAPSTSAGVSSQAPSTPAPAAASTPAAAAHRSNPLTSDITATPSPA 561
Query: 129 PASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 188
+ + +T+ + S L+ G E + Q+ MG + R + RA+RAAY
Sbjct: 562 APVVAPVAGGSTTF-----NDPSALLMGPQGEQVVAQMESMG---FPRSDIDRAMRAAYF 613
Query: 189 NPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLD 246
NP+RA+EYL +GIPE QAE + A AP + T P P T++ + ++
Sbjct: 614 NPDRAIEYLLNGIPETTQAEHREAAPAPPATTTPSGSTAAP------PTTAAVGDDEHIN 667
Query: 247 LFP---------------------QGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANP 285
LF QGL G G+LDFLR++P FQ LR +VQ P
Sbjct: 668 LFEAAAQAGAPQLGGAGRGARAAGQGLAPPAEGG-NLGNLDFLRSNPHFQQLRQLVQQQP 726
Query: 286 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVT 343
Q+L+P+LQ++G NPQL +LI ++Q FL+L++E + D A L P I VT
Sbjct: 727 QMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDI--------DDDAQLPPGAHQITVT 778
Query: 344 PEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EER+AIERL +GF R V++ +FAC+KNEELAAN+L + E +D
Sbjct: 779 EEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQPDEGDD 825
>gi|432091539|gb|ELK24564.1| UV excision repair protein RAD23 like protein B, partial [Myotis
davidii]
Length = 414
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 169/307 (55%), Gaps = 41/307 (13%)
Query: 89 STAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
S P A SS P P + AT + V +P P +++ S+ +S S ++
Sbjct: 129 SITPASATASSEPAPVS--ATKQENPV---EQPAETPVATSPTSTDSTSGDSSRSNLFED 183
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 184 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 240
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGP-NANPLDLFPQGLPDVGSGAAGAGSLDF 267
V P PV ++GP ++ + ++G L+F
Sbjct: 241 AV-------------------VDPPPVATTGPPQSSVAAAAATTTATTTTTSSGGHPLEF 281
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG--- 324
LRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 282 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 341
Query: 325 ---------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEE 375
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE
Sbjct: 342 GGGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNEN 400
Query: 376 LAANYLL 382
LAAN+LL
Sbjct: 401 LAANFLL 407
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct: 4 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 56
>gi|426197465|gb|EKV47392.1| hypothetical protein AGABI2DRAFT_192582 [Agaricus bisporus var.
bisporus H97]
Length = 404
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 147/429 (34%), Positives = 206/429 (48%), Gaps = 77/429 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKT + F ++++P DT+ +K KIE+ +PA Q +IY GK+L DD T+E
Sbjct: 1 MKITVKTTQQKVFQIDIEPTDTIGSLKAKIESAHN---HPAPTQKIIYSGKILSDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
V E F V+M+ K K APT A + + + T P A +TE
Sbjct: 58 SCGVKEKDFFVLMVAKPKPTPTPKPEAPAAPTTAEPTPPSSTSPATTTTPSHAE--TTET 115
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ P+P P + S+ S +S S + G L+ IQ +++MG +DR+ V+R
Sbjct: 116 SSQPSPLPPPTTTSTSSTSSTEPATLGDGSGFLTGAALQTTIQNMMEMG---FDREQVLR 172
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRA+YNNP+RAVEYL +GIP E + A P + TQ P S P
Sbjct: 173 ALRASYNNPDRAVEYLMTGIPAHLEAE-----------AAGPPRTSSTTQSNPAAPSAPQ 221
Query: 242 AN----------------------PLDLF-------------------------PQGLPD 254
+N P +LF G PD
Sbjct: 222 SNSPAAPAPAPATAPAAAAPPANQPQNLFQLAQQQQTGGGGGAAAGMGGMGGMGGMGAPD 281
Query: 255 VGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFL 314
+ + AA +PQ Q LR +V+ NP L+QP++Q+L QNPQ+ + + + L
Sbjct: 282 LAALAA----------NPQIQQLREIVRQNPALIQPLIQQLAAQNPQMAQALAANPDMLL 331
Query: 315 RLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNE 374
+L+ +G E + Q I VT EEREAI RLEA+GF R VLE +FAC+KNE
Sbjct: 332 QLLGA-GEGDEEGGPEGEVPPGAQVISVTVEEREAIARLEALGFPRHAVLEAYFACDKNE 390
Query: 375 ELAANYLLD 383
ELAANYL +
Sbjct: 391 ELAANYLFE 399
>gi|356551713|ref|XP_003544218.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 254
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 132/220 (60%), Gaps = 28/220 (12%)
Query: 134 VSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERA 193
++ V+ T+ + YG ASN V G+NLE IQQI+DMGGG+WDRDTV ALRAA NNPE
Sbjct: 59 INFVNVTTNT--YGLTASNXVVGSNLEKTIQQIMDMGGGSWDRDTVSHALRAAXNNPEHV 116
Query: 194 VEYLYSGIPEQAEV-QPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGL 252
V+YLYSGIPE E+ + P N T++ T A N++PL++FP+ +
Sbjct: 117 VDYLYSGIPEVVEIFMSIGPYP-----INQTTKIGGATARAVFGVH--NSSPLNMFPKEI 169
Query: 253 PDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQAD 312
+ AG G LDF RN+ LQP+L ELGKQN L+RLI EH +
Sbjct: 170 --ICGVGAGIGLLDFHRNN----------------LQPVLXELGKQNLSLLRLISEHHVE 211
Query: 313 FLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIER 352
FL L NEPV+G EG++ DQ MP SI VTP E+ AI+R
Sbjct: 212 FLXLTNEPVEGSEGDIFDQPEQDMPHSINVTPAEQHAIKR 251
>gi|426219746|ref|XP_004004079.1| PREDICTED: UV excision repair protein RAD23 homolog B [Ovis aries]
Length = 336
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 165/307 (53%), Gaps = 39/307 (12%)
Query: 89 STAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
S P SS P PA+ P+ T P +++ S+ +S S ++
Sbjct: 53 SVTPASTTASSEPAPASVTKQEKPAERPVET-----PVATTPTSTDSTSGDSSRSNLFED 107
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 108 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 164
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGAGSLDF 267
V P P S+G P ++ + ++G L+F
Sbjct: 165 AV-------------------VDPPPTASTGAPQSSVAAAAATTTATTTTASSGGHPLEF 205
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG--- 324
LRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 206 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 265
Query: 325 -------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELA 377
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LA
Sbjct: 266 GGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLA 324
Query: 378 ANYLLDH 384
AN+LL
Sbjct: 325 ANFLLQQ 331
>gi|225562098|gb|EEH10378.1| nucleotide excision repair protein RAD23 [Ajellomyces capsulatus
G186AR]
Length = 386
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 156/414 (37%), Positives = 226/414 (54%), Gaps = 54/414 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +TV VK KI +G DV AQQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K P ST + ++AP + AP A+TPA + P++++
Sbjct: 58 SYNIEEKGFIVCMVSK---PKPAPSTSAGVSSQAPSTPAPAAASTPAAPAHRSNPLTSDI 114
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P+PA A+ + +T+ + S L+ G E + Q+ MG + R + R
Sbjct: 115 TATPSPAAPVAAPVAGGSTT-----FNDPSALLMGPQGEQVVAQMESMG---FPRSDIDR 166
Query: 182 ALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
A+RAAY NP+RA+EYL +GIPE QAE + A AP + T P P T++
Sbjct: 167 AMRAAYFNPDRAIEYLLNGIPETTQAEHREAAPAPPATTTPSGSTAAP------PTTAAV 220
Query: 240 PNANPLDLFP---------------------QGLPDVGSGAAGAGSLDFLRNSPQFQVLR 278
+ ++LF QGL G G+LDFLR++P FQ LR
Sbjct: 221 GDDEHINLFEAAAQAGAPQLGGAGRGARAAGQGLAPPAEGG-NLGNLDFLRSNPHFQQLR 279
Query: 279 AMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP- 337
+VQ PQ+L+P+LQ++G NPQL +LI ++Q FL+L++E + D A L P
Sbjct: 280 QLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDI--------DDDAQLPPG 331
Query: 338 -QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
I VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L + E +D
Sbjct: 332 THQITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQPDEGDD 385
>gi|395740795|ref|XP_003777470.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pongo abelii]
Length = 337
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 161/274 (58%), Gaps = 33/274 (12%)
Query: 123 PAPTPAPAS--ASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
PA TP S A+ S+ +S S ++ A S LV G + E + +I+ MG ++R+ V+
Sbjct: 80 PAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVI 136
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRA++NNP+RAVEYL GIP E Q V P QAA+ T PQ + A ++
Sbjct: 137 AALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS--TGAPQSSAVAAAAATTT 191
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
+ ++G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NP
Sbjct: 192 AT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENP 239
Query: 301 QLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQLAGLMPQSIQVTPEEREAI 350
QL++ I +HQ F++++NEPVQ G + + +G M IQVTP+E+EAI
Sbjct: 240 QLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAI 298
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
ERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 299 ERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 332
>gi|449676312|ref|XP_002169219.2| PREDICTED: UV excision repair protein RAD23 homolog B-like [Hydra
magnipapillata]
Length = 343
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 132/393 (33%), Positives = 199/393 (50%), Gaps = 59/393 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F +EV D VF +K I +GS+ +P Q LIY GK+L DD L
Sbjct: 1 MLITLKTLQQKTFKIEVDENDKVFALKELIAKEKGSE-FPIECQRLIYSGKILDDDKALC 59
Query: 62 ENKVA-ENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + +FVV+M K K T +G S + PQ +T V S+
Sbjct: 60 EYNIDPVKNFVVVMSVKPKVVTKDGDKSSGVGSSTPQ--------VESTVSMETVQPSST 111
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P T A AS + S + ++ ++ + G+ L+ +I +++ +G + R+ V+
Sbjct: 112 PLLTST-ASASETTSVSTTSTAVSSQPDIGTSFLTGSALDSSINELMSLG---FSREQVL 167
Query: 181 RALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
RAL+ ++ N +RA EYL SG +PE E APG+
Sbjct: 168 RALQRSFQNADRAAEYLLSGNVPELVE-----DAPGD----------------------- 199
Query: 240 PNANPLDLFPQGLP-DVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
+D + LP DVG+ G L+FLR+ PQF+++R+ VQ +P L +LQE+G+
Sbjct: 200 -----IDEESEALPADVGA----EGDLNFLRDFPQFRMMRSQVQRHPDTLPQLLQEIGRS 250
Query: 299 NPQLVRLIQEHQADFLRLINEPVQG------GEGNLGDQLAGLMPQSIQVTPEEREAIER 352
NPQL++LI ++Q F+ L+NEP G E G I VT EE+ AI+R
Sbjct: 251 NPQLLQLISQNQEAFIALLNEPETGESSAPVSEDAFGGDAGAGGGFQIHVTTEEKAAIDR 310
Query: 353 LEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
+ MGF+ A V++ FFAC KNE+LA +LL +
Sbjct: 311 IVGMGFNEAEVIQAFFACEKNEQLAIEFLLSSI 343
>gi|357138887|ref|XP_003571018.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 290
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 123/180 (68%), Gaps = 10/180 (5%)
Query: 148 HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV 207
H AS+L++G+NL+ I QI++MGGG+WDRD V RALRAAYNNPERAV+YLYSGIP AEV
Sbjct: 103 HVASDLLSGSNLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYLYSGIPVTAEV 162
Query: 208 QPVARAPGNGQAANSPTQMPQPTQPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGAGSLD 266
P Q ANS P P SG PN PL LFPQ + GAAG GSLD
Sbjct: 163 A----VPVVPQGANSTDATP----PGVTGLSGIPNTAPLSLFPQWASNA-GGAAGGGSLD 213
Query: 267 FLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEG 326
FLRN+ QFQ LR MV NPQ+LQPMLQELG+ +PQL+RLIQE+ +F L NE G+G
Sbjct: 214 FLRNNQQFQALREMVHTNPQILQPMLQELGRVDPQLLRLIQENSDEFFGLPNENFDAGDG 273
>gi|196008299|ref|XP_002114015.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
gi|190583034|gb|EDV23105.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
Length = 387
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 134/375 (35%), Positives = 193/375 (51%), Gaps = 34/375 (9%)
Query: 23 TVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 82
TV +K +IE +G D + A LIY GK+L DDT +E+ K+ +FVV+M+ K +
Sbjct: 27 TVRALKERIEKDRG-DAFLADDLKLIYGGKLLSDDTIIEDVKINPKNFVVVMVAKKQPSR 85
Query: 83 GEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSE 142
ST S A S+ T +T+ + E + A T S
Sbjct: 86 QSSSTDSAAARSEAASTTTTTDVASSTSTTGGDSKAQEKSEAKT----ETSTPQSQPQQS 141
Query: 143 SGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
A S+L++G+++E + +I+ MG + RD V+ ALRA++NNP RAVEYL +GIP
Sbjct: 142 GSSDSDAGSSLISGSSIEQIVSEIVSMG---FPRDQVLLALRASFNNPHRAVEYLTTGIP 198
Query: 203 EQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA 262
A P Q+ + QP NPL PQG
Sbjct: 199 ANVLETQTAETPTATQSESQAEPQTQPQPQEEEDQQQRQQNPLPSSPQG----------- 247
Query: 263 GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ 322
G L FLR+ F +R +VQ+NP+ L PMLQ+LG+ NPQL+ LI+ HQ++F+ L+NEP+
Sbjct: 248 GPLGFLRSQAVFSQMRQIVQSNPEALAPMLQQLGQNNPQLLELIRNHQSEFMELMNEPIT 307
Query: 323 GGEGNLG---------------DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVF 367
G+ + GL I VT EE+EAI+RL+A+GFD +V++ +
Sbjct: 308 EGQPRIAPYQQQQQQQQPSRQSPGGPGLGSLGISVTQEEKEAIDRLKALGFDEGLVVQAY 367
Query: 368 FACNKNEELAANYLL 382
FAC+KNE LAAN+LL
Sbjct: 368 FACDKNENLAANFLL 382
>gi|119182327|ref|XP_001242306.1| hypothetical protein CIMG_06202 [Coccidioides immitis RS]
Length = 418
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 140/398 (35%), Positives = 205/398 (51%), Gaps = 47/398 (11%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+ + ++ LK F +E +P +T+ +K KI +G D AAQQ LIY GK+L+D T+
Sbjct: 47 FLSVLLQDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTI 103
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + E F+V M++K P P S P + P
Sbjct: 104 ESYNIEEKGFIVCMVSK--------------PKAQPAPSTPAGPSQTPATPAAPSSTPAA 149
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P+ A ++ + + + +G + S L+ G E A+QQ+ MG + RD +
Sbjct: 150 PSAPAPATNAPSAPPATPSPATAGATFNDPSALLMGPQSETAVQQMEAMG---FARDDIQ 206
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RA+RAA+ NP+RA+EYL SGIP+ AE + + A S P TQPA T S
Sbjct: 207 RAMRAAFFNPDRAIEYLLSGIPDHAEQEAARQQ--ARATAPSNAAAPASTQPAANTES-- 262
Query: 241 NANPLDLFPQGLPDVGSGAAGA------------GSLDFLRNSPQFQVLRAMVQANPQLL 288
P++LF G +L+FLRN+P FQ LR +VQ PQ+L
Sbjct: 263 -EEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLNNLEFLRNNPHFQQLRQLVQQQPQML 321
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEE 346
+P+LQ++G NPQL +LI ++Q FL+L++E + D A L P +I VT EE
Sbjct: 322 EPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDI--------DDDAQLPPGAHAISVTEEE 373
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
R+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 374 RDAIERLCRLGFSRDAVIQAYFACDKNEELAANFLFEQ 411
>gi|238503490|ref|XP_002382978.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
gi|220690449|gb|EED46798.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
Length = 439
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 142/403 (35%), Positives = 216/403 (53%), Gaps = 54/403 (13%)
Query: 9 LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAEN 68
LK F ++ +P +TV VK KI +G +V Q LIY GK+L+DD +E + E
Sbjct: 69 LKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIESYNIEEK 125
Query: 69 SFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPA 128
F+V M++K K S+ + P++AP TP+ + P + + T
Sbjct: 126 GFIVCMVSKPK-----ASSSTATPSQAPS----TPSRAATSTPAAPPAPAPSTNASATAP 176
Query: 129 PASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 188
PA+ S ++ + S++ + S L++G+ E I + MG + RD + RA+RAA+
Sbjct: 177 PATPSPAAATQPSDAAF--NDPSALLSGSQGEAVISHMESMG---FPRDDINRAMRAAFF 231
Query: 189 NPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNA------ 242
NP RA+EYL +GIPE + + + A + PQP P S+G NA
Sbjct: 232 NPTRAIEYLLNGIPENIQQEQEQQQQQQQAATAT-AASPQP----PAASAGGNAPATTGG 286
Query: 243 -NPLDLF-----------PQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQP 290
P++LF P G + G +LDFLRN+P FQ LR +VQ PQ+L+P
Sbjct: 287 EEPVNLFEAAAQAGTQEGPHGARSGSAAGEGLPNLDFLRNNPHFQQLRQLVQQQPQMLEP 346
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP---QSIQVTPEER 347
+LQ++ NPQ+ +LI +++ FL+L++E EG+ G +P I VT EER
Sbjct: 347 ILQQVAAGNPQIAQLIGQNEEQFLQLLSE-----EGD------GALPPGTHQIHVTEEER 395
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+AIERL +GF R +V+E +FAC+KNEELAAN+L ++ + ED
Sbjct: 396 DAIERLCRLGFSRDMVIEAYFACDKNEELAANFLFENTDDPED 438
>gi|357621015|gb|EHJ73001.1| nuclear excision repair protein rad23 [Danaus plexippus]
Length = 323
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 128/396 (32%), Positives = 191/396 (48%), Gaps = 80/396 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +E+ P++TV +K+KIE +G D Y A Q LIY GK+L DD L
Sbjct: 1 MLLTLKTLQQQTFQIEIDPQETVKALKLKIEVEKGKD-YAADNQRLIYAGKILLDDNKLH 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+VIM+TK K + ++ ++AP A A+T + ++ V + +P
Sbjct: 60 TYNIDEKKFIVIMVTKPKTSDNQQASSTSAP------EAGESASTESGDGKSKV-VEEKP 112
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P P P AS V++ + E +Q I+DMG ++R V +
Sbjct: 113 KPQPAAEPERASEPPVTSNEP---------------DFESTVQSIMDMG---YNRQQVEQ 154
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRA++NN ERAVEYL +GIPE+ + A + PQ Q V PN
Sbjct: 155 ALRASFNNRERAVEYLITGIPEELLQEQEAEESADEDPLGFLRDQPQFQQMRAVIQQNPN 214
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
LL +LQ++G+ NP
Sbjct: 215 ---------------------------------------------LLNTVLQQIGQTNPA 229
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGNLG------DQLAGLMPQS-IQVTPEEREAIERLE 354
L++ I +HQ F+R++NEPV D PQ+ IQV+P+++EAIERL+
Sbjct: 230 LLQAISQHQQAFVRMLNEPVNPSAAGAVAEEAVPDNPVPQQPQNVIQVSPQDKEAIERLK 289
Query: 355 AMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 290 ALGFPEHMVIQAYFACEKNENLAANFLLS--QNFDD 323
>gi|344228919|gb|EGV60805.1| hypothetical protein CANTEDRAFT_137273 [Candida tenuis ATCC 10573]
gi|344228920|gb|EGV60806.1| UV excision repair protein Rad23 [Candida tenuis ATCC 10573]
Length = 356
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 128/398 (32%), Positives = 197/398 (49%), Gaps = 62/398 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I K K ++V+ +DTV K + + + DV +Q +Y GKVL DD +L
Sbjct: 1 MQITFKDFKKQKLTIDVEVDDTVLKTKETVASQKSCDV---SQLKFVYSGKVLADDQSLG 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E ++ M++K K+P P + PT A T ++ A +EP
Sbjct: 58 SYKIKEGDSIIYMISKAKKPV------------VPVAEPPTAATTGDSSESAA----SEP 101
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
APTP SAT+ + V A S G+ E IQ I++MG +DRD V +
Sbjct: 102 V-APTP----------SATTVAPVSEEAGSAFAQGSEREATIQNIMEMG---YDRDQVEQ 147
Query: 182 ALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
ALRAA+NNP RAVEYL +GIPE Q V+P + A + Q + +S
Sbjct: 148 ALRAAFNNPHRAVEYLLTGIPESLQQPVEPPTAVEEDVDATPVAAETTQDDKDHDHDTSD 207
Query: 240 PNANPLDLFPQGLPDV-GSGAAG--AGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
N N + G G A G LD ++ Q Q+LR +Q NP+L+ +L+++
Sbjct: 208 RNVNLFEAAAAANNASAGEGDASDPVGELD---DAAQLQLLREAIQTNPELIHELLEQIS 264
Query: 297 KQNPQLVRLIQEHQADFL------------RLINEPVQGGEGNLGDQLAGLMPQSIQVTP 344
+ NP + +LIQ+ F+ + +E ++ GE AG+ I+++
Sbjct: 265 RSNPHIAQLIQQDPEGFINQFFGAGAEEGFEIDDEAMEEGED------AGV---RIEISE 315
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
E++ AI RL +GFDR +V++V+ AC+KNEE+AA+ L
Sbjct: 316 EDQSAINRLCELGFDRNLVIQVYMACDKNEEVAADILF 353
>gi|189195060|ref|XP_001933868.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979747|gb|EDU46373.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 382
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 154/419 (36%), Positives = 214/419 (51%), Gaps = 68/419 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI K LK F +E +P +T+ +K KI+ +G +V QQ LIY GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKAKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K + A + S P P A A +A S+ P
Sbjct: 58 SYNIEEKGFIVCMVSKPK------AAAGAASSSKAAPSTPAPVAAQTPAAPSAPAPSSNP 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ + S + SG + S L G E AI + MG + R + R
Sbjct: 112 Q-------NAPATPSPAPAQASGERFNDPSALTMGGEREAAIANMESMG---FARADIDR 161
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RAVEYL +GIPE A Q PT P P ++G
Sbjct: 162 AMRAAFFNPDRAVEYLLTGIPESALQ-----------EQAQQAQARAPTSPTPAGNTGAT 210
Query: 242 ANP----------LDLF-----------PQGLPDVGS--GAAG-----AGSLDFLRNSPQ 273
A P ++LF P G GS GA G A SLDFLRN+PQ
Sbjct: 211 ATPANAPSGADEPMNLFEAAAQAANRDRPSGGQRGGSAPGATGGAALNANSLDFLRNNPQ 270
Query: 274 FQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLA 333
FQ LR +VQ PQ+L+P+LQ++G NPQL ++I ++ FL+L+ E D+ A
Sbjct: 271 FQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIAQNPEQFLQLLAEDA--------DEDA 322
Query: 334 GLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
L P Q+I VT +EREAIERL +GF+R +V++ +FAC+KNEELAAN+L D + +D
Sbjct: 323 PLPPGAQAISVTEDEREAIERLCRLGFERDLVIQAYFACDKNEELAANFLFDQPDDADD 381
>gi|295665738|ref|XP_002793420.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278334|gb|EEH33900.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 375
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/402 (35%), Positives = 203/402 (50%), Gaps = 53/402 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +T+ +K +I +G DV A Q LIY GK+L+D+ T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M+TK K TPAAT + AP T P
Sbjct: 58 SYNIEEKGFIVCMVTKPK--------------------TTTPAATSSQAPSTPAPAVAST 97
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAA------SNLVAGNNLEGAIQQILDMGGGTWD 175
AP PA + + + TS + S L+ G E I Q+ MG +
Sbjct: 98 PAAPAPASNPQTTDAPATTSPAAPAAAGGATFNDPSALLMGPQGEQVIAQMESMG---FP 154
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQ----------AANSPTQ 225
R + RA+RAA+ NP+RA+EYL +GIPE ++ + AP +
Sbjct: 155 RSDIDRAMRAAFFNPDRAIEYLLNGIPETSQAEQREAAPATTAPSGPAAPAATGGDEHVN 214
Query: 226 MPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA-GSLDFLRNSPQFQVLRAMVQAN 284
+ + A G QGL G G+ G+LDFLRN+P FQ LR +VQ
Sbjct: 215 LFEAAAQAGAPQGGGAGRGARATGQGLATAAEGQGGSLGNLDFLRNNPHFQQLRQLVQQQ 274
Query: 285 PQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQV 342
PQ+L+P+LQ++G NPQL +LI ++Q FL+L++E ++ A L P I V
Sbjct: 275 PQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIEDD--------AQLPPGTHQITV 326
Query: 343 TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
T EER+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 327 TEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQ 368
>gi|348522726|ref|XP_003448875.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 481
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 183/320 (57%), Gaps = 23/320 (7%)
Query: 85 GSTRSTAPTKAPQSSAPTPAATPATAP----QTAVPISTEPTPAPT-PAPASASVSSVSA 139
GST A + AP++ PA P+ +P QT + +P P+ AP +S SS+
Sbjct: 170 GSTAPVASSTAPEAVEEAPALVPSDSPTPAAQTEEELREDPENEPSDTAPVQSSASSL-- 227
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
E G+ AAS LV G E + +I+ +G ++R+ VV ALRA+YNNP+RAVEYL
Sbjct: 228 VDELGLLEEAASILVTGPEYENLVSEIMSIG---YEREQVVAALRASYNNPDRAVEYLLM 284
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG- 258
GIP +A + + AN T + P N +++F QG P GS
Sbjct: 285 GIPARASDLHNPQPSRHSTPANPSTPSTEEPPQQPPAPPSSVINDVEVF-QG-PVSGSQP 342
Query: 259 -AAGAGS------LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQA 311
AG GS L+FLRN PQFQ +R ++Q NP LL +LQ+LG+ NPQL++ I EHQ
Sbjct: 343 VTAGGGSGSIGNPLEFLRNQPQFQQMRQIIQQNPALLPALLQQLGRDNPQLLQQITEHQE 402
Query: 312 DFLRLINEPVQGGEGNLGDQLAGLMPQS--IQVTPEEREAIERLEAMGFDRAIVLEVFFA 369
F++++NEP Q G+ D A P + IQVTP+E+EAIERL+A+GF +V++ +FA
Sbjct: 403 RFVQMLNEP-QAGDTGGEDADAHGSPHTNYIQVTPQEKEAIERLKALGFPEGLVIQAYFA 461
Query: 370 CNKNEELAANYLLDHMHEFE 389
C KNE LAAN+LL + E
Sbjct: 462 CEKNENLAANFLLQQTWDDE 481
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 28/178 (15%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I +KTL+ +F +E+ PE TV +K KIE +G D +P+ Q LIY GK+L DD L
Sbjct: 1 MLTITLKTLQQQTFRIEIDPELTVKALKEKIEEHRGKDAFPSVGQKLIYAGKILNDDIPL 60
Query: 61 EENKVAENSFVVIMLTKNKRPT--GEGSTRS-------------------TAPTKAPQSS 99
+E K+ E +FVV+M+TK K PT E +T S + P + P S
Sbjct: 61 KEYKIDEKNFVVVMVTKPK-PTSPAEAATHSVPTPAATPVPPPAAAPAPASGPKQVP--S 117
Query: 100 APTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGN 157
PT + A +VP P+ AP + +V+SV AT++ + H+ S +G+
Sbjct: 118 TPTHTTSAAVPASQSVP----PSEAPPSVQENTTVASVGATAKPTLDSHSESAPASGS 171
>gi|260821380|ref|XP_002606011.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
gi|229291348|gb|EEN62021.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
Length = 315
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 126/390 (32%), Positives = 187/390 (47%), Gaps = 92/390 (23%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ KTL+ +F +E++ TV +K K+E +G + +PAA LIY GK+L+DD L
Sbjct: 1 MQVTFKTLQQQTFKIEIEENATVKQLKEKVEGEKGKESFPAAGLKLIYAGKILQDDLPLS 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ K+ E +FVV+M+TK P + P P
Sbjct: 61 QYKIDEKNFVVVMVTKQ-------------PKRNP------PRQRQHLLLHLHPHPHLLQ 101
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P P +S H S V G E + ++ MG ++RD VV
Sbjct: 102 LPRPRRRNPRKRRRRKRRKKKSRRKLHLYSQ-VTGTAYETMVTSMMSMG---FERDQVVA 157
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRA++NNP+RAVEYL +
Sbjct: 158 ALRASFNNPDRAVEYLLT------------------------------------------ 175
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
GLP A L+FLR+ PQF +R ++++NP LL +LQ LG+ NPQ
Sbjct: 176 ---------GLP-----PAMENPLEFLRDQPQFNNMRQLIRSNPTLLSALLQNLGQSNPQ 221
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGN------LGDQL---AGLMPQSIQVTPEEREAIER 352
L++ I +HQ +F+ ++NEPV+G G + +QL ++P VTP+E+EAIER
Sbjct: 222 LLQHINDHQQEFIEMLNEPVEGEGGAAGSGPPVMEQLPTGQNVIP----VTPQEKEAIER 277
Query: 353 LEAMGFDRAIVLEVFFACNKNEELAANYLL 382
L+A+GFD +V++ +FAC+KNE LAAN+LL
Sbjct: 278 LKALGFDEGLVIQAYFACDKNENLAANFLL 307
>gi|261197590|ref|XP_002625197.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|239595160|gb|EEQ77741.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|327354300|gb|EGE83157.1| nucleotide excision repair protein RAD23 [Ajellomyces dermatitidis
ATCC 18188]
Length = 386
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 152/414 (36%), Positives = 214/414 (51%), Gaps = 54/414 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +TV VK KI +G DV AQQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K + S+ P AP A+TP TAP P S P
Sbjct: 58 SYNIEEKGFIVCMVSKPKPAPSTSAAASSQAPSTP---APVAASTP-TAP---APRSN-P 109
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T + PA S + + + + S L+ G E I Q+ MG + R + R
Sbjct: 110 TTSDAPATPSPAAPAAAPAVGGAATFNDPSALLMGPQGEQVIAQMESMG---FPRSDIDR 166
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RA+EYL +GIPE ++A A P AP ++
Sbjct: 167 AMRAAFFNPDRAIEYLLNGIPE------TSQAEQREAAPAPPATTAPTGGAAPAAAATEG 220
Query: 242 ANPLDLFPQGLPDVGSGAAGA-----------------------GSLDFLRNSPQFQVLR 278
++LF + G+ AGA G+LDFLRN+P FQ LR
Sbjct: 221 DEHVNLF-EAAAQAGTPQAGATGRGARAAGQGLAAAAEGQGGSLGNLDFLRNNPHFQQLR 279
Query: 279 AMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP- 337
+VQ PQ+L+P+LQ++G NPQL +LI ++Q FL+L++E + D A L P
Sbjct: 280 QLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDI--------DDDAQLPPG 331
Query: 338 -QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
I VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L + E +D
Sbjct: 332 THQITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQPDEGDD 385
>gi|259487698|tpe|CBF86570.1| TPA: UV excision repair protein (RadW), putative (AFU_orthologue;
AFUA_5G06040) [Aspergillus nidulans FGSC A4]
Length = 369
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 149/399 (37%), Positives = 223/399 (55%), Gaps = 41/399 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++ +P +TV VK KI T +G DV P+ + LIY GK+L+DD T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWDV-PSLK--LIYSGKILQDDKTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT-KAPQSSAPTPAATPATAPQTAVPISTE 120
+ E F+V M++K K T P+ ++P + A + +TPA P A +T
Sbjct: 58 FYNIEEKGFIVCMVSKPK----------TQPSSQSPSTPAKSVTSTPAPPPAPAPSTNTS 107
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T P PA+ S +S A S + S L+ G+ E I Q++ MG ++R+ +
Sbjct: 108 TTATSGPVPATPSPASSGAAQSSASTFNDPSALLTGSQSEEVINQMMSMG---FEREQIN 164
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RA+RAA+ NP+RA+EYL +GIPE + + R+ AA AP +SG
Sbjct: 165 RAMRAAFFNPDRAIEYLLNGIPENIQQEQQQRSAATTPAAPQAAA----ASGAPPATSGE 220
Query: 241 NANPLDLFPQGLPDVGSGAAGAG-------SLDFLRNSPQFQVLRAMVQANPQLLQPMLQ 293
+ P++LF G SLDFLRN P FQ LR +VQ PQ+L+P+LQ
Sbjct: 221 D-EPVNLFEAAAQAGEGRGGAGGASGGEPQSLDFLRNHPAFQQLRQLVQQQPQMLEPILQ 279
Query: 294 ELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS--IQVTPEEREAIE 351
++G+ NPQ+ +LI +++ FL+L++E + A L P + I VT EER+AIE
Sbjct: 280 QVGQGNPQIAQLIGQNEEAFLQLLSE----------EDDAALPPGTTQIHVTEEERDAIE 329
Query: 352 RLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
RL +GF R +V++ +FAC+KNEELAANYL ++ + +D
Sbjct: 330 RLCRLGFPRDLVIQAYFACDKNEELAANYLFENSDDGDD 368
>gi|325091544|gb|EGC44854.1| pre-mRNA-splicing factor Cwc24 [Ajellomyces capsulatus H88]
Length = 826
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 154/407 (37%), Positives = 222/407 (54%), Gaps = 54/407 (13%)
Query: 9 LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAEN 68
LK F +E +P +TV VK KI +G DV AQQ LIY GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 69 SFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPA 128
F+V M++K P ST + ++AP + AP A+TPA A + P++++ T P+PA
Sbjct: 505 GFIVCMVSK---PKPAPSTSAGVSSQAPSTPAPAAASTPAAAAHRSNPLTSDITATPSPA 561
Query: 129 PASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 188
A+ + +T+ + S L+ G E + Q+ MG + R + RA+RAAY
Sbjct: 562 APVAAPVAGGSTTF-----NDPSALLMGPQGEQVVAQMESMG---FPRSDIDRAMRAAYF 613
Query: 189 NPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLD 246
NP+RA+EYL +GIPE QAE + A A + T P P T++ + ++
Sbjct: 614 NPDRAIEYLLNGIPETTQAEHREAAPATPATTTPSGSTAAP------PTTAAVGDDEHIN 667
Query: 247 LFP---------------------QGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANP 285
LF QGL G G+LDFLR++P FQ LR +VQ P
Sbjct: 668 LFEAAAQAGAPQLGGAGRGARAAGQGLAPPAEGG-NLGNLDFLRSNPHFQQLRQLVQQQP 726
Query: 286 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVT 343
Q+L+P+LQ++G NPQL +LI ++Q FL+L++E + D A L P I VT
Sbjct: 727 QMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDI--------DDDAQLPPGAHQITVT 778
Query: 344 PEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EER+AIERL +GF R V++ +FAC+KNEELAAN+L + E +D
Sbjct: 779 EEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQPDEGDD 825
>gi|187117168|ref|NP_001119685.1| rad23 protein [Acyrthosiphon pisum]
gi|89473754|gb|ABD72689.1| putative RAD23-like B [Acyrthosiphon pisum]
gi|239788640|dbj|BAH70991.1| ACYPI000077 [Acyrthosiphon pisum]
Length = 347
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 131/392 (33%), Positives = 200/392 (51%), Gaps = 62/392 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I K L+ +F +E+ + TV +K K++ +GS+ Y A Q LIY GK+L DDT +
Sbjct: 1 MLITFKNLQQHTFKLEIDSDQTVRQLKEKLQAEKGSE-YLAENQKLIYAGKILSDDTKIS 59
Query: 62 ENKVAENSFVVIMLTK---NKRPTGEGSTRSTAPTKAPQSSAPTPA-ATPAT-APQTAVP 116
+ + FVV+M++K T +T S A + + TP+ +TP A +++P
Sbjct: 60 DCNIDSKKFVVVMVSKATGAVTATSATNTASAASATSVSDTKSTPSVSTPMIPADNSSIP 119
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
I+ P+P S +ASN + E IQ I+DMG ++R
Sbjct: 120 IAQPRVVEQLPSPVETRASE----------PESASN----DETERTIQNIMDMG---YER 162
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
V ALRA++NNP+RAVEYL +GIP++ P P +
Sbjct: 163 PQVEEALRASFNNPDRAVEYLLTGIPQELLTDPTI----------------SPNRSVLSE 206
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLD---FLRNSPQFQVLRAMVQANPQLLQPMLQ 293
SG DL SG++ + D FLRN P FQ +R +VQ NP+LL +LQ
Sbjct: 207 DSG------DL---------SGSSQVPATDPLAFLRNQPTFQQMRTVVQQNPELLNSVLQ 251
Query: 294 ELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS---IQVTPEEREAI 350
++G+ NP L+++I +Q F+R++NEP +G G P + V+ +++EAI
Sbjct: 252 QIGQTNPALLQMISNNQEAFVRMLNEPNEGAAAAPAAASRG--PADGFEVPVSTQDKEAI 309
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+RL+A+GF V++ +FAC KNE +AAN LL
Sbjct: 310 DRLKALGFPEHQVVQAYFACEKNENMAANLLL 341
>gi|195172518|ref|XP_002027044.1| GL18167 [Drosophila persimilis]
gi|194112822|gb|EDW34865.1| GL18167 [Drosophila persimilis]
Length = 430
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 141/462 (30%), Positives = 210/462 (45%), Gaps = 105/462 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I VK L+ +F +E PE TV ++K KI +G + Y A +Q LIY G +L DD T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 62 ENKVAENSFVVIMLTKNK--------------RPTGEGSTRSTAPTKAPQSS-APTPAAT 106
K+ E F+V+MLT++ + T E + K + + + T +T
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGST 119
Query: 107 PAT-APQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQ 165
P + A ++A +S T P S+S V + + + A SNL+ G +
Sbjct: 120 PISGAVESAPSVSVSSTGTAIQRPYSSS-DLVGELANASLQTRAESNLLMGEEYNKTVLS 178
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
+++MG + RD V RA+ A++NNPERAVEYL +GIP + E A N Q +P
Sbjct: 179 MVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDESLFNAGDETNNQNPRAPGS 235
Query: 226 MP--QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQA 283
P +P P SS P +FLR+ PQF +R+++
Sbjct: 236 QPISEPAVDLPAQSSDP------------------------FEFLRSQPQFLQMRSLIYQ 271
Query: 284 NPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVT 343
NP LL +LQ++G+ NP L++LI E+Q FL ++N+P++ GE G+ P IQ
Sbjct: 272 NPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIE-GESASGNNTQRSTPPRIQSF 330
Query: 344 PE------------------------------------EREAIE--------RLEA---- 355
P +RE E RL A
Sbjct: 331 PTRTESLPSSATEEGPVANQRSSAGGIAADQLQRRDVADREVTEQSAGIATIRLNAQDQD 390
Query: 356 -------MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+GF A+VL+ +FAC K+EELAAN+LL F+D
Sbjct: 391 AIERLKALGFPEALVLQAYFACEKDEELAANFLLS--SSFDD 430
>gi|170092959|ref|XP_001877701.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647560|gb|EDR11804.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 378
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/405 (31%), Positives = 199/405 (49%), Gaps = 56/405 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +KT + F +E+ DT+ +K KI+ QG +P A Q +IY GK+L +D T++
Sbjct: 1 MKITIKTTQQKVFQIEIDTSDTIAVLKDKIQESQG---HPTAAQKIIYSGKILSNDKTID 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V+M++K K ++ S+AP ++P + T P+
Sbjct: 58 SCGIKEKDFLVLMVSKPKPTPAATASTSSAPQDVQMDTSPPAPPAAPPSSSTPAPVLVSD 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T + T A+ + +A S ++G L+ AI + +MG + RD V+R
Sbjct: 118 TTSVTQPTTPAATPAATAPPAVAPAFGDMSTFLSGEALQSAITNMTEMG---FPRDQVLR 174
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS-------PTQMPQPTQPAP 234
A+RA+YNN +RAVEYL +GIP E + P A +P P QP
Sbjct: 175 AMRASYNNADRAVEYLMTGIPAHLEAEAAGPTPPTAAPATQPAAAAPISANVPPPNQPQN 234
Query: 235 VTSSGPNA-------------NPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMV 281
+ + NP+ L +L+ LR++PQ Q LR +
Sbjct: 235 LFQATGGVGPAAAGGAAGAPQNPVHL----------------NLEALRDNPQIQQLRQQL 278
Query: 282 QANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP---Q 338
+PQ+ QP++Q+L QNP + +++ ++ +L LG +L +P
Sbjct: 279 ADDPQMAQPLIQQLAMQNPAMAQMLAQNPDALAQL-----------LGVELDEEVPPGAH 327
Query: 339 SIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLD 383
+ VT EER+AIERLEA+GF R VLE +FAC+KNEELAANYL +
Sbjct: 328 VVSVTAEERDAIERLEALGFPRQAVLEAYFACDKNEELAANYLFE 372
>gi|195133968|ref|XP_002011410.1| GI14087 [Drosophila mojavensis]
gi|193912033|gb|EDW10900.1| GI14087 [Drosophila mojavensis]
Length = 442
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 135/469 (28%), Positives = 213/469 (45%), Gaps = 121/469 (25%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F ++ PE TV ++K +I +G++ Y +Q LIY G +L D+ T+
Sbjct: 1 MIITIKNLQQQTFAIDFDPEKTVLELKNQIFYERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 62 ENKVAENSFVVIMLTKN--------------KRPTGEGSTRSTAPTKAP----------- 96
KV E F+V+ML+++ K+P + +T K P
Sbjct: 60 SYKVDEKKFIVVMLSRDISGTSSNTNADGQRKQPNEQMEGSTTGIDKKPVLQNANASSAE 119
Query: 97 --------QSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
+S+ + + IST P P PA +S+ V + + +
Sbjct: 120 KGIINNNNRSNDVLGVEIERSGSSSQTQISTAP-EVPIPATDYSSIDLVGELANASLQSR 178
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A SNL+ G + +++MG + RD V RA+ A++NNPERAVEYL +GIP+ +
Sbjct: 179 AESNLLMGEEFNRTVASMVEMG---YPRDQVERAMAASFNNPERAVEYLINGIPQDENL- 234
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFL 268
PG+ + +P V +S GLP + A +FL
Sbjct: 235 ---FNPGDEE------------EPNRVETSHRQG--------GLP----AESAADPFEFL 267
Query: 269 RNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ------ 322
R+ PQF +R+++ NP LL +LQ++G+ NP L++LI E+Q FL ++N+P+
Sbjct: 268 RSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPLDEEAADN 327
Query: 323 -----------------------GGEGNLGDQ--LAGLMPQSIQVTPE------------ 345
E N G +AG SI + PE
Sbjct: 328 AQRAGRTQSSSPRRTESTPTTNPSEESNAGGHRSVAGSDNPSIAIAPEGDDSVATGRNIQ 387
Query: 346 ------------EREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+++AIERL+A+GF A+VL+ +FAC K+EELAAN+LL
Sbjct: 388 AENLATIRLTPQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLL 436
>gi|126002609|ref|XP_001352382.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
gi|54640152|gb|EAL29275.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
Length = 430
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 141/462 (30%), Positives = 210/462 (45%), Gaps = 105/462 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I VK L+ +F +E PE TV ++K KI +G + Y A +Q LIY G +L DD T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 62 ENKVAENSFVVIMLTKNK--------------RPTGEGSTRSTAPTKAPQSS-APTPAAT 106
K+ E F+V+MLT++ + T E + K + + + T +T
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGST 119
Query: 107 PAT-APQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQ 165
P + A ++A +S T P S+S V + + + A SNL+ G +
Sbjct: 120 PISGAVESAPSVSVSSTGTAIQRPYSSS-DLVGELANASLQTRAESNLLMGEEYNKTVLS 178
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
+++MG + RD V RA+ A++NNPERAVEYL +GIP + E A N Q +P
Sbjct: 179 MVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDESLFNAGDETNNQNPRAPGS 235
Query: 226 MP--QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQA 283
P +P P SS P +FLR+ PQF +R+++
Sbjct: 236 QPISEPAVDLPAQSSDP------------------------FEFLRSQPQFLQMRSLIYQ 271
Query: 284 NPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVT 343
NP LL +LQ++G+ NP L++LI E+Q FL ++N+P++ GE G+ P IQ
Sbjct: 272 NPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIE-GESASGNNTQRSTPPRIQSF 330
Query: 344 PE------------------------------------EREAIE--------RLEA---- 355
P +RE E RL A
Sbjct: 331 PTRTESLPSSATEEGPVANQRSSAGGIAADQLQRPDVADREVTEQSAGIATIRLNAQDQD 390
Query: 356 -------MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+GF A+VL+ +FAC K+EELAAN+LL F+D
Sbjct: 391 AIERLKALGFPEALVLQAYFACEKDEELAANFLLS--SSFDD 430
>gi|451994966|gb|EMD87435.1| hypothetical protein COCHEDRAFT_1206663 [Cochliobolus
heterostrophus C5]
Length = 379
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 160/414 (38%), Positives = 219/414 (52%), Gaps = 61/414 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI K LK F +E +P +T+ +K KI+ +G +V QQ LIY GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K + +++ AP + AP PA TP +APQ ST
Sbjct: 58 SYNIEEKGFIVCMVSKPKA-----APAASSSRAAPSTPAPAPAQTP-SAPQAPTQSSTTH 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ + S + SG + S L G E AI + MG D D R
Sbjct: 112 N--------APATPSPAPAQASGERFNDPSALTMGGEREAAIANMESMGFARADID---R 160
Query: 182 ALRAAYNNPERAVEYLYSGIPEQA----EVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
A+RAA+ NP+RAVEYL +GIPE A Q ARAP NSPT P
Sbjct: 161 AMRAAFFNPDRAVEYLLTGIPESALQEQAQQTQARAP------NSPT--PAGGNAGATAQ 212
Query: 238 SGPNA---NPLDLFPQG----------------LPDVGSGAAGAGSLDFLRNSPQFQVLR 278
+ P++ P++LF G GA A SLDFLRN+PQFQ LR
Sbjct: 213 ANPSSGGDEPMNLFEAAAAAQNRGGAGGARSGGTGGAGGGALNANSLDFLRNNPQFQQLR 272
Query: 279 AMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP- 337
+VQ PQ+L+P+LQ++G NPQL ++I + FL+L+ E D+ A L P
Sbjct: 273 QVVQQQPQMLEPILQQVGAGNPQLAQMIASNPEQFLQLLAED--------ADEDAPLPPG 324
Query: 338 -QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
Q+I VT EEREAIERL +GF+R +V++ +FAC+KNEELAAN+L D + +D
Sbjct: 325 AQAISVTEEEREAIERLCRLGFERDLVIQAYFACDKNEELAANFLFDQPDDADD 378
>gi|451846054|gb|EMD59365.1| hypothetical protein COCSADRAFT_185234 [Cochliobolus sativus
ND90Pr]
Length = 379
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 160/414 (38%), Positives = 220/414 (53%), Gaps = 61/414 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI K LK F +E +P +T+ +K KI+ +G +V QQ LIY GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K + +++ AP + AP PA TP +APQ ST
Sbjct: 58 SYNIEEKGFIVCMVSKPKA-----APAASSSKAAPSTPAPAPAQTP-SAPQAPTQSSTTH 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ + S + SG + S L G E AI + MG D D R
Sbjct: 112 N--------APATPSPAPAQASGERFNDPSALTMGGEREAAIANMESMGFARADID---R 160
Query: 182 ALRAAYNNPERAVEYLYSGIPEQA----EVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
A+RAA+ NP+RAVEYL +GIPE A Q ARAP NSPT P
Sbjct: 161 AMRAAFFNPDRAVEYLLTGIPESALQEQAQQTQARAP------NSPT--PAGGNTGATAQ 212
Query: 238 SGPNA---NPLDLFPQG----------------LPDVGSGAAGAGSLDFLRNSPQFQVLR 278
+ P++ P++LF G+GA A SLDFLRN+PQFQ LR
Sbjct: 213 ANPSSGGDEPMNLFEAAAAAQNRGGAGGARSGGTGGAGAGALNANSLDFLRNNPQFQQLR 272
Query: 279 AMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP- 337
+VQ PQ+L+P+LQ++G NPQL ++I + FL+L+ E D+ A L P
Sbjct: 273 QVVQQQPQMLEPILQQVGAGNPQLAQMIASNPEQFLQLLAED--------ADEDAPLPPG 324
Query: 338 -QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
Q+I VT EEREAIERL +GF+R +V++ +FAC+KNEELAAN+L D + +D
Sbjct: 325 AQAISVTEEEREAIERLCRLGFERDLVIQAYFACDKNEELAANFLFDQPDDADD 378
>gi|70998612|ref|XP_754028.1| UV excision repair protein (RadW) [Aspergillus fumigatus Af293]
gi|66851664|gb|EAL91990.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
Af293]
gi|159126238|gb|EDP51354.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
A1163]
Length = 376
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 145/403 (35%), Positives = 219/403 (54%), Gaps = 54/403 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E +P +TV VK KI +G +V Q LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFVIEAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K P+ + P++AP S P+ AA A +A S P
Sbjct: 58 TYNIEEKGFIVCMVSKPKAPSS-----AATPSQAP--STPSRAAASTPAAPSAPAPSAAP 110
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ PA S + + + T S + + S L++G+ E I Q+ MG + R + R
Sbjct: 111 SAPAVPATPSPAAPAPAPTDASAAF-NDPSALLSGSQSEAVISQMESMG---FPRSDINR 166
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP----APVTS 237
A+RAA+ NP+RA+EYL +GIP+ + + A + P+P+ P AP ++
Sbjct: 167 AMRAAFFNPDRAIEYLLNGIPDNIQQEQQQ-------QAAAAAAAPRPSAPSGESAPSST 219
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAG--------------SLDFLRNSPQFQVLRAMVQA 283
G P++LF + G+G +LDFLRN+P FQ LR +VQ
Sbjct: 220 GG--DEPVNLF-EAAAQAGTGEGTGRGARAGAVGAGEGLPNLDFLRNNPHFQQLRQLVQQ 276
Query: 284 NPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQ 341
PQ+L+P+LQ++ NPQ+ +LI +++ FL+L++E G L P +I
Sbjct: 277 QPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEDDG----------ALPPGTHAIS 326
Query: 342 VTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
VT EER+AIERL +GF R +V++ +FAC+KNEELAANYL ++
Sbjct: 327 VTEEERDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFEN 369
>gi|350634058|gb|EHA22422.1| hypothetical protein ASPNIDRAFT_204514 [Aspergillus niger ATCC
1015]
Length = 369
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 152/404 (37%), Positives = 214/404 (52%), Gaps = 51/404 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++ +P +TV VK KI +G +V Q LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K T G T S AP+ ++ TPAA PA AP A P
Sbjct: 58 SYNIEEKGFIVCMVSKPK-ATSSG-TSSQAPSTPSRAVTSTPAAPPAPAPSAASTTPAVP 115
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ TP+PA+A S G + S L++G E + Q+ MG + R V R
Sbjct: 116 S---TPSPAAAGTSQAQ-----GSAFNDPSALLSGTQSEAVVAQMEAMG---FARSDVNR 164
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RA+EYL +GIPE N Q + S P+
Sbjct: 165 AMRAAFFNPDRAIEYLLNGIPE------------NIQQEQQQQAAAASAPQSAAPESAPS 212
Query: 242 A---NPLDLFPQGLPDVGSGAAGAG----------SLDFLRNSPQFQVLRAMVQANPQLL 288
A P++LF G G G SL+FLRN+P FQ LR +VQ PQ+L
Sbjct: 213 AGDDEPVNLFEAAAQAGGQEGGGRGARAAGGAELPSLEFLRNNPHFQQLRQLVQQQPQML 272
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS--IQVTPEE 346
+P+LQ++ NPQ+ +LI +++ FL+L++E E L P + I VT EE
Sbjct: 273 EPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEPDDDE--------ALPPGTTQIHVTEEE 324
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
R+AIERL +GF R +V++ +FAC+KNEELAANYL ++ + ED
Sbjct: 325 RDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFENPDDPED 368
>gi|47718026|gb|AAH70960.1| Rad23b protein [Rattus norvegicus]
Length = 252
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 147/259 (56%), Gaps = 37/259 (14%)
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
+S S ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL
Sbjct: 8 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 64
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGA 259
GIP E Q V P P V++ P + + +
Sbjct: 65 GIPGDRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTT 107
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE 319
+G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NE
Sbjct: 108 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 167
Query: 320 PVQGG----------------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIV 363
PVQ G + + +G M IQVTP+E+EAIERL+A+GF +V
Sbjct: 168 PVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLV 226
Query: 364 LEVFFACNKNEELAANYLL 382
++ +FAC KNE LAAN+LL
Sbjct: 227 IQAYFACEKNENLAANFLL 245
>gi|324513075|gb|ADY45389.1| UV excision repair protein RAD23 A [Ascaris suum]
Length = 348
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 191/393 (48%), Gaps = 69/393 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI KT+ +F VEV P T+ ++K KI +G YP Q LIY GK+L D T+E
Sbjct: 1 MKITFKTISQVTFHVEVDPSITIGELKAKIAEQEGQLEYPVDGQKLIYNGKILDDAQTVE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K+ F+V+M+ + K P + + P TPA A +VP +
Sbjct: 61 ELKIDAAKFIVVMVARKKAPPPAANAPESTPA--------TPAVEEGAA---SVPSTEAV 109
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T APT A + +A ++ E +Q I+ MG + RD V+R
Sbjct: 110 TAAPTGTAQPAPQQASAAAPDALTPEQ-----------EETVQAIVAMG---YPRDRVIR 155
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAA+ N +RAVEYL + IP++ E+
Sbjct: 156 ALRAAFFNGDRAVEYLCTEIPDEEEL---------------------------------- 181
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
A D A G L+FLR PQF+ LR +VQ+NP +L ++Q++ + NP
Sbjct: 182 AGQHDEGEAEESAGEESAQG---LEFLRQLPQFEQLRELVQSNPAILPQIIQQIAQSNPA 238
Query: 302 LVRLIQEHQADFLRLINEP-----VQGGEGNLGDQLAGLMPQ--SIQVTPEEREAIERLE 354
L+R IQ +Q F+ L+N P QGG G A P+ +I+VT ER+AI RL+
Sbjct: 239 LMRAIQSNQEQFVNLLNAPSTEGGGQGGAAPGGAPQAHAQPRGIAIEVTAAERDAINRLK 298
Query: 355 AMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
AMGF +V+E +FAC+KNE+LA NY+L M E
Sbjct: 299 AMGFPEQLVIEAYFACDKNEDLAVNYILARMDE 331
>gi|225679426|gb|EEH17710.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 379
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 139/396 (35%), Positives = 207/396 (52%), Gaps = 37/396 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +T+ +K +I +G DV A Q LIY GK+L+D+ T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M+TK K +T P A S AP+ + A ++ P
Sbjct: 58 SYNIEEKGFIVCMVTKPK---------TTTPA-ATSSQAPSTPTPAVASTPAAPAPASNP 107
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P PA ++ + + + + G + S L+ G E I Q+ MG + R + R
Sbjct: 108 QPTDAPATSTPAAPAPAPAAAGGATFNDPSALLMGPQGEQVIAQMESMG---FPRSDIDR 164
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQ----------AANSPTQMPQPTQ 231
A+RAA+ NP+RA+EYL +GIPE ++ + AP + + +
Sbjct: 165 AMRAAFFNPDRAIEYLLNGIPETSQAEQREAAPATTAPSGPAAPAATGGDEHVNLFEAAA 224
Query: 232 PAPVTSSGPNANPLDLFPQGLPDVGSGAAGA-GSLDFLRNSPQFQVLRAMVQANPQLLQP 290
A G QGL G G+ G+LDFLRN+P FQ LR +VQ PQ+L+P
Sbjct: 225 QAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGNLDFLRNNPHFQQLRQLVQQQPQMLEP 284
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEERE 348
+LQ++G NPQL +LI ++Q FL+L++E ++ A L P I VT EER+
Sbjct: 285 ILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIEDD--------AQLPPGTHQITVTEEERD 336
Query: 349 AIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 337 AIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQ 372
>gi|226291157|gb|EEH46585.1| hypothetical protein PADG_02683 [Paracoccidioides brasiliensis
Pb18]
Length = 379
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 204/396 (51%), Gaps = 37/396 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +T+ +K +I +G DV A Q LIY GK+L+D+ T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M+TK K T +T S AP+ TP A+ P P S
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTT-PAATSSQAPS--------TPTPAVASTPAAPAPASNPQ 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A+ + A + + + S L+ G E I Q+ MG + R + R
Sbjct: 109 PTDAPATTTPAAPAPAPAAAGGATF-NDPSALLMGPQGEQVIAQMESMG---FPRSDIDR 164
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQ----------AANSPTQMPQPTQ 231
A+RAA+ NP+RA+EYL +GIPE ++ + AP + + +
Sbjct: 165 AMRAAFFNPDRAIEYLLNGIPETSQAEQREAAPATTAPSGPAAPAATGGDEHVNLFEAAA 224
Query: 232 PAPVTSSGPNANPLDLFPQGLPDVGSGAAGA-GSLDFLRNSPQFQVLRAMVQANPQLLQP 290
A G QGL G G+ G+LDFLRN+P FQ LR +VQ PQ+L+P
Sbjct: 225 QAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGNLDFLRNNPHFQQLRQLVQQQPQMLEP 284
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEERE 348
+LQ++G NPQL +LI ++Q FL+L++E ++ A L P I VT EER+
Sbjct: 285 ILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIEDD--------AQLPPGTHQITVTEEERD 336
Query: 349 AIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 337 AIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQ 372
>gi|417410194|gb|JAA51574.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 377
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 147/250 (58%), Gaps = 32/250 (12%)
Query: 143 SGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
S ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 143 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 199
Query: 203 EQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA 262
E Q V P PA T+ P ++ + ++G
Sbjct: 200 GDRESQAVVDPP-----------------PA-ATTGAPQSSVAAAAATTTATTTTTSSGG 241
Query: 263 GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV- 321
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPV
Sbjct: 242 HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQ 301
Query: 322 ---------QGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNK 372
GG G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC K
Sbjct: 302 EAGGQGGGSGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 360
Query: 373 NEELAANYLL 382
NE LAAN+LL
Sbjct: 361 NENLAANFLL 370
>gi|121712652|ref|XP_001273937.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
gi|119402090|gb|EAW12511.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
Length = 383
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 214/400 (53%), Gaps = 41/400 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++ +P +TV VK KI +G +V +Q LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---SQLKLIYSGKILQDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K ++ + P++AP S P+ A +T P +
Sbjct: 58 TYNIEEKGFIVCMVSKPK-----ATSAAATPSQAP--STPS-RAVASTPAAPPAPAPSAA 109
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P + + ++++ V + S L++G E + Q+ MG + R + R
Sbjct: 110 TSTPAVPATPSPAAPAQPSADTPVAFNDPSALLSGAQSEAVVAQMESMG---FPRSDINR 166
Query: 182 ALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
A+RAA+ NP+RA+EYL +GIPE E Q + G A + P V SS
Sbjct: 167 AMRAAFFNPDRAIEYLLNGIPETIHQEQQQQQQQQQAGAGAAASPPAPSAPSGESVPSST 226
Query: 240 PNANPLDLFPQGL-PDVGSGAA--------GAG----SLDFLRNSPQFQVLRAMVQANPQ 286
P++LF G GA GAG +L+FLRN+P FQ LR +VQ PQ
Sbjct: 227 GGDEPVNLFEAAAQAGTGEGAGRGARAGVEGAGEALPNLEFLRNNPHFQQLRQLVQQQPQ 286
Query: 287 LLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTP 344
+L+P+LQ++ NPQ+ +LI +++ FL+L++E G L P +I VT
Sbjct: 287 MLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEDDG----------ALPPGTHAISVTE 336
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
EER+AIERL +GF R +V++ +FAC+KNEELAANYL ++
Sbjct: 337 EERDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFEN 376
>gi|402904433|ref|XP_003915050.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Papio anubis]
Length = 308
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 136/391 (34%), Positives = 194/391 (49%), Gaps = 92/391 (23%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--TPATAPQTAVPISTEP 121
++ E +FVV+M+TK K G + +PT AP+SS P A + + PQ A P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPQPAAREDKSP 124
Query: 122 T--PAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ APT +P S S S S+ S AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGR-EEDAASTLVTGSEYETMLTEIMSMG---YERERV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 181 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------ 223
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++N
Sbjct: 224 -----------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQEN 266
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
PQL+ +L+A+GF
Sbjct: 267 PQLL------------------------------------------------QLKALGFP 278
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFED 390
++V++ +FAC KNE LAAN+LL F+D
Sbjct: 279 ESLVIQAYFACEKNENLAANFLLS--QNFDD 307
>gi|410950562|ref|XP_003981973.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Felis catus]
Length = 308
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 189/396 (47%), Gaps = 102/396 (25%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE--- 120
++ E +FVV+M+TK K G +PT AP+SS P A PA+ P + E
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA-PASGMSQPSPTAREDKS 123
Query: 121 ------PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
PT +P S S S E AAS LV G+ E + +I+ MG +
Sbjct: 124 PSEESVPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA- 223
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+
Sbjct: 224 ----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQ 261
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLE 354
LG++NPQL+ +L+
Sbjct: 262 LGQENPQLL------------------------------------------------QLK 273
Query: 355 AMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
A+GF ++V++ +FAC KNE LAAN+LL FED
Sbjct: 274 ALGFPESLVIQAYFACEKNENLAANFLLS--QNFED 307
>gi|194225605|ref|XP_001916027.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Equus caballus]
Length = 336
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 168/311 (54%), Gaps = 47/311 (15%)
Query: 89 STAPTKAPQSSAPTPA-ATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYG 147
S P SS P PA AT P + +P AP +++ S+ +S S ++
Sbjct: 53 SITPASTTASSEPAPASATKQEKP------AEKPAEAPVATSPTSTDSTSGDSSRSNLFE 106
Query: 148 HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEV 207
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E
Sbjct: 107 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRES 163
Query: 208 QPVARAPGNGQAANSPTQMPQPTQPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGAGSLD 266
Q V P P S+G P ++ + ++G L+
Sbjct: 164 QAV-------------------VDPPPAASTGAPQSSVAAAAATTTATTTTTSSGGHPLE 204
Query: 267 FLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLI---QEHQADFLRLINEPVQG 323
FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I QEH F++++NEPVQ
Sbjct: 205 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEH---FIQMLNEPVQE 261
Query: 324 G----------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKN 373
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KN
Sbjct: 262 AGGQGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKN 320
Query: 374 EELAANYLLDH 384
E LAAN+LL
Sbjct: 321 ENLAANFLLQQ 331
>gi|403302246|ref|XP_003941773.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Saimiri boliviensis boliviensis]
Length = 308
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 133/395 (33%), Positives = 190/395 (48%), Gaps = 100/395 (25%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAVQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAGEDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 REQVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQEL 295
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+L
Sbjct: 224 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQL 262
Query: 296 GKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEA 355
G++NPQL+ +L+A
Sbjct: 263 GQENPQLL------------------------------------------------QLKA 274
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 275 LGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 307
>gi|392996951|ref|NP_001257292.1| UV excision repair protein RAD23 homolog A isoform 3 [Homo sapiens]
gi|426387415|ref|XP_004060164.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Gorilla gorilla gorilla]
Length = 308
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 133/391 (34%), Positives = 193/391 (49%), Gaps = 92/391 (23%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE-PT 122
++ E +FVV+M+TK K G + +PT AP+SS P A P + P + E +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA-PTSGMSHPPPAAREDKS 123
Query: 123 PAPTPAPASASVSSVSATSESGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P+ AP ++ S + SG G AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 124 PSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 181 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------ 223
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++N
Sbjct: 224 -----------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQEN 266
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
PQL+ +L+A+GF
Sbjct: 267 PQLL------------------------------------------------QLKALGFP 278
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFED 390
++V++ +FAC KNE LAAN+LL F+D
Sbjct: 279 ESLVIQAYFACEKNENLAANFLLS--QNFDD 307
>gi|426228904|ref|XP_004008535.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Ovis aries]
Length = 311
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 131/394 (33%), Positives = 190/394 (48%), Gaps = 95/394 (24%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA-------TPATAPQTAVP 116
++ E +FVV+M+TK K G +PT P+SS P+A P TA + P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFPSAPASGMSHPPPTAREDKSP 124
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
S E P +P S SV S ++ AA + V G+ E + +I+ MG ++R
Sbjct: 125 -SEESAPTTSPESVSGSVPSSGSSGREEDVAFAAPSTVTGSEYETMLTEIMSMG---YER 180
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ VV ALRA+YNNP RAVEYL +GIP E P +G S QP+
Sbjct: 181 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPS--- 226
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG
Sbjct: 227 --------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLG 266
Query: 297 KQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM 356
++NPQL+ +L+A+
Sbjct: 267 QENPQLL------------------------------------------------QLKAL 278
Query: 357 GFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 279 GFPESLVIQAYFACEKNENLAANFLLS--QNFDD 310
>gi|242793918|ref|XP_002482264.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
gi|218718852|gb|EED18272.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
Length = 375
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 149/403 (36%), Positives = 217/403 (53%), Gaps = 43/403 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +TV VK KI +G + A+QQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPTETVGQVKEKIAREKG---WEASQQKLIYSGKILQDANTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K P G + SAP A + +TA VP
Sbjct: 58 SYNIEEKGFIVCMVSKPK-PAAGGPSTPAKAAPPATPSAPAQAPSASTAAAPQVP----- 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP PAS+ ++ + + + S L G+ E I Q+ MG + R + R
Sbjct: 112 ---STPTPASSGATTAATGEAAAF--NDPSALAMGSQGEAVISQMEAMG---FPRADIDR 163
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RAV+YL +GIPE + Q +A + T PA ++G
Sbjct: 164 AMRAAFFNPDRAVDYLLNGIPENIQ-QEQTQARAAATSPAPAPAPAPATTPAAPEATG-- 220
Query: 242 ANPLDLFPQGLPDVGSGAAGAG-----------SLDFLRNSPQFQVLRAMVQANPQLLQP 290
P++LF G+G AG +LDFLRN+P FQ LR +VQ PQ+L+P
Sbjct: 221 NEPVNLFEAAAQAGGTGRGAAGGAGAGDAGALGNLDFLRNNPHFQQLRQLVQQQPQMLEP 280
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP---QSIQVTPEER 347
+LQ++G NPQL +LI ++Q FL+L+ E ++GD+ G +P I+VT EER
Sbjct: 281 ILQQVGAGNPQLAQLIGQNQEQFLQLLAE-------DMGDE--GELPPGAHEIRVTEEER 331
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+AIERL +GF R V++ +FAC+KNEELAAN+L + E +D
Sbjct: 332 DAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFEQPDEGDD 374
>gi|358373285|dbj|GAA89884.1| UV excision repair protein [Aspergillus kawachii IFO 4308]
Length = 369
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 142/409 (34%), Positives = 211/409 (51%), Gaps = 61/409 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++ +P +TV VK KI +G +V Q LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K +T S ++AP TP+ + P +
Sbjct: 58 SYNIEEKGFIVCMVSKPK------ATSSGTSSQAPS----TPSRAVTSTPAAPPAPAPSA 107
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P++ S ++ A G + S L++G E + Q+ MG + R V R
Sbjct: 108 ASTTPAVPSTPSPAAAGAAQAQGSAFNDPSALLSGTQSEAVVAQMEAMG---FARSDVNR 164
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RA+EYL +GIPE + + Q + PQ P S+G +
Sbjct: 165 AMRAAFFNPDRAIEYLLNGIPENIQQE--------QQQQAAAASAPQTAAPESAPSAGDD 216
Query: 242 ANPLDLFPQGLPDVGSGAAGAG------------------SLDFLRNSPQFQVLRAMVQA 283
P++LF AA AG SL+FLRN+P FQ LR +VQ
Sbjct: 217 -EPVNLF--------EAAAQAGGQEGGARGARAAGGAELPSLEFLRNNPHFQQLRQLVQQ 267
Query: 284 NPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS--IQ 341
PQ+L+P+LQ++ NPQ+ +LI +++ FL+L++E E L P + I
Sbjct: 268 QPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEPDDDE--------ALPPGTTQIH 319
Query: 342 VTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
VT EER+AIERL +GF R +V++ +FAC+KNEELAANYL ++ + ED
Sbjct: 320 VTEEERDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFENPDDPED 368
>gi|397487606|ref|XP_003814883.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Pan paniscus]
Length = 308
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 133/391 (34%), Positives = 193/391 (49%), Gaps = 92/391 (23%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE-PT 122
++ E +FVV+M+TK K G + +PT AP+SS P A P + P + E +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTPAPPEASPTAAPESSTSFPPA-PTSGMSHPPPAAREDKS 123
Query: 123 PAPTPAPASASVSSVSATSESGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P+ AP ++ S + SG G AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 124 PSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 181 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------ 223
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++N
Sbjct: 224 -----------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQEN 266
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
PQL+ +L+A+GF
Sbjct: 267 PQLL------------------------------------------------QLKALGFP 278
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFED 390
++V++ +FAC KNE LAAN+LL F+D
Sbjct: 279 ESLVIQAYFACEKNENLAANFLLS--QNFDD 307
>gi|452846190|gb|EME48123.1| hypothetical protein DOTSEDRAFT_69906 [Dothistroma septosporum
NZE10]
Length = 402
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 161/444 (36%), Positives = 222/444 (50%), Gaps = 99/444 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E +P + + VK KI +G + + Q LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFTIEAEPSEKIGQVKEKISAEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E F+V M +K K AP+K + S P A P+ST
Sbjct: 58 SYKIEEKGFIVCMTSKPK----------AAPSKPAEPSTP------------AKPVSTPA 95
Query: 122 TPAPTPAPASASVS-----------SVSATSESGVYGHAASNLVAGNNLEGAIQQILDMG 170
PA A S S S S +ATSESG + S L G AI + MG
Sbjct: 96 APAAPQAAQSTSASQPPATPSPAPASTAATSESGNFNDP-SALALGEQRTAAIAGMEAMG 154
Query: 171 GGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPT--QM 226
+ RD + RA+RAA+ NP+RAVEYL +GIP Q E +P A +P PT Q
Sbjct: 155 ---FARDQIDRAMRAAFFNPDRAVEYLLNGIPASAQQEERPAAASP-------RPTSNQG 204
Query: 227 PQPTQPAPVTS--SGPNAN-PLDLF----------------------------------- 248
QP PA + + + P+ + P++LF
Sbjct: 205 QQPVAPATIATETAAPSGDEPVNLFEQAAQAGRGGAGARGAAGTGAGAGAGAGSLAAALG 264
Query: 249 PQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQE 308
G G AGA +L+FLR++PQFQ LR +VQ PQ+L+P+LQ++ NPQL ++I +
Sbjct: 265 GGQGGGQGGGQAGAANLEFLRSNPQFQQLRQVVQQQPQMLEPILQQVAAGNPQLAQIITQ 324
Query: 309 HQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEV 366
+ F++L+ E GD L P Q I VT EEREAIERL +GF+R +V++
Sbjct: 325 NPEQFMQLLAED--------GDDDVALPPGAQQISVTEEEREAIERLCRLGFERDMVIQA 376
Query: 367 FFACNKNEELAANYLLDHMHEFED 390
+FAC+KNEELAAN+L D E E+
Sbjct: 377 YFACDKNEELAANFLFDQPDEPEE 400
>gi|237844371|ref|XP_002371483.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|95007044|emb|CAJ20260.1| DNA repair protein rad23 homolog b, putative [Toxoplasma gondii RH]
gi|211969147|gb|EEB04343.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|221501783|gb|EEE27543.1| UV excision repair protein rhp23, putative [Toxoplasma gondii VEG]
Length = 380
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/414 (31%), Positives = 201/414 (48%), Gaps = 63/414 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ ++TL ++EV E+TV +VK K+E Q PAA+Q L++ GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 62 E-NKVAENSFVVIMLTK-----------------------NKRPTGEGSTRSTAPTKAPQ 97
+ + + EN +V+M+TK + T GS+ + + +
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 98 SS-APTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAG 156
S+ + TP + + + P + PA AS+ S+ ATSE A S L G
Sbjct: 119 SAKSETPGGSGNASGNSGGPAN--------PAHASSPSSAPDATSEGLSRAAAESALFTG 170
Query: 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN 216
LE + ++ MG + R A+RAA+NNP+RAVEYL +G+P + V+ G
Sbjct: 171 PQLEETLTHLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGMPPE-----VSAMLGG 222
Query: 217 GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQV 276
A P + + NPL GA LR+ P F
Sbjct: 223 DSAETQEAHGDVPPEEGDAEGDEDDENPL---------------GA-----LRHHPAFNQ 262
Query: 277 LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLM 336
+R MVQANP +L +LQ +G NPQL+ LI ++Q FL ++ GE
Sbjct: 263 IRQMVQANPAMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSDQGEGETGAAGTGGFAA 322
Query: 337 PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
P IQ+T EE EA++RLE++GF R +E + AC++NEE+AANYL +++++ D
Sbjct: 323 PGIIQMTAEEMEALQRLESLGFSRHQAVEAYLACDRNEEMAANYLFENLNDLGD 376
>gi|291407421|ref|XP_002719934.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 408
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 138/433 (31%), Positives = 205/433 (47%), Gaps = 82/433 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +K +F +++ P TV +K KIE QG D +P A Q L+Y G+VL DD L
Sbjct: 1 MRLTLKAWPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLR 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ ++ E+ V +++ + + T +TA A QS T A+ A AP + P
Sbjct: 61 DCQIHEHHAVTVLVARPEAATTAAPATATATATAGQSHPATAASAGAGAPARGPALPAAP 120
Query: 122 TPA--PTPAPASASVSSVSA------------------------TSESGVYG-------- 147
+ TPAPAS S S ++ T + + G
Sbjct: 121 ATSTRATPAPASVSASGTASAQPAPAGAPQAAGQQAGPPGSPSPTPDDAIAGPSSRAQPS 180
Query: 148 -HAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP---- 202
AA L+ E + +I+ MG ++R+ V+ ALRA++NNP RAVEYL G+P
Sbjct: 181 EQAARALLTRPASEQMVAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRA 237
Query: 203 EQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA 262
AEV+P PQ SS A D G+ +G+
Sbjct: 238 SAAEVEP-----------------PQAGSSGAGRSSAVEA-----------DAGTATSGS 269
Query: 263 GS--LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP 320
G LDFL N P+FQ LR ++Q +P LL +LQ + +NPQL+ ++Q R++ P
Sbjct: 270 GGHPLDFLLNHPEFQQLRQIIQHDPSLLPEVLQGIRPRNPQLLAQFSQYQGYLSRMLTAP 329
Query: 321 VQGGE---------GNLGDQLAGLMPQS-IQVTPEEREAIERLEAMGFDRAIVLEVFFAC 370
V+ ++G A S I++TP E AIERL+A+GF +V+E +FAC
Sbjct: 330 VEEAGGERRGGEGVDSVGTAEAARADGSYIKITPRELAAIERLKALGFPEGLVVEAYFAC 389
Query: 371 NKNEELAANYLLD 383
KNEE AAN+LL+
Sbjct: 390 EKNEEWAANFLLE 402
>gi|389611285|dbj|BAM19254.1| UV excision repair protein rad23 [Papilio polytes]
Length = 326
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 134/396 (33%), Positives = 190/396 (47%), Gaps = 77/396 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ SF +E+ PE+TV +K+KIE +G D Y A Q LIY GK+L DD +
Sbjct: 1 MLVTLKTLQQLSFQIEIDPEETVKALKLKIEVEKGKD-YAADYQRLIYAGKILLDDNKIS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+VIM+TK K P++ SS TP A A +
Sbjct: 60 TYNIDEKKFIVIMVTKPK------------PSETQASSTSTPEAGECAASTVVGDSKDKS 107
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T TP P +A+ +A AA + A + E +Q I+DMG ++R V +
Sbjct: 108 TAEETPQPPTAAEPERTAEP-------AAPVISAELDFESTVQSIMDMG---YNRQQVEQ 157
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRA+++N ERAVEYL +GIPE+ + A + PQ Q V P+
Sbjct: 158 ALRASFSNRERAVEYLITGIPEELLQEQEAEESSEEDPLSFLRDQPQFQQMRAVIQQNPS 217
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
L N+ VL+ + Q NP LLQ
Sbjct: 218 --------------------------LLNT----VLQQIGQTNPALLQA----------- 236
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGL------MPQS-IQVTPEEREAIERLE 354
I +HQ F+R++NEPV Q +G+ PQS +QV+P++REAIERL+
Sbjct: 237 ----ISQHQQAFVRMLNEPVNPPATGAVIQDSGVDNPIPQQPQSVVQVSPQDREAIERLK 292
Query: 355 AMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 293 ALGFPEHMVVQAYFACEKNENLAANFLLS--QNFDD 326
>gi|67523697|ref|XP_659908.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
gi|40745259|gb|EAA64415.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
Length = 378
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 149/408 (36%), Positives = 223/408 (54%), Gaps = 50/408 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++ +P +TV VK KI T +G DV P+ + LIY GK+L+DD T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWDV-PSLK--LIYSGKILQDDKTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT-KAPQSSAPTPAATPATAPQTAVPISTE 120
+ E F+V M++K K T P+ ++P + A + +TPA P A +T
Sbjct: 58 FYNIEEKGFIVCMVSKPK----------TQPSSQSPSTPAKSVTSTPAPPPAPAPSTNTS 107
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T P PA+ S +S A S + S L+ G+ E I Q++ MG ++R+ +
Sbjct: 108 TTATSGPVPATPSPASSGAAQSSASTFNDPSALLTGSQSEEVINQMMSMG---FEREQIN 164
Query: 181 RALRAAYNNPERAVEYLYS---------GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ 231
RA+RAA+ NP+RA+EYL + GIPE + + R+ AA
Sbjct: 165 RAMRAAFFNPDRAIEYLLNLLISAFAIKGIPENIQQEQQQRSAATTPAAPQAAA----AS 220
Query: 232 PAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG-------SLDFLRNSPQFQVLRAMVQAN 284
AP +SG + P++LF G SLDFLRN P FQ LR +VQ
Sbjct: 221 GAPPATSGED-EPVNLFEAAAQAGEGRGGAGGASGGEPQSLDFLRNHPAFQQLRQLVQQQ 279
Query: 285 PQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS--IQV 342
PQ+L+P+LQ++G+ NPQ+ +LI +++ FL+L++E + A L P + I V
Sbjct: 280 PQMLEPILQQVGQGNPQIAQLIGQNEEAFLQLLSE----------EDDAALPPGTTQIHV 329
Query: 343 TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
T EER+AIERL +GF R +V++ +FAC+KNEELAANYL ++ + +D
Sbjct: 330 TEEERDAIERLCRLGFPRDLVIQAYFACDKNEELAANYLFENSDDGDD 377
>gi|212535726|ref|XP_002148019.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
gi|210070418|gb|EEA24508.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
Length = 372
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 154/401 (38%), Positives = 215/401 (53%), Gaps = 42/401 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +E +P +TV VK KI +G + A+QQ LIY GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETVGQVKEKIAQEKG---WEASQQKLIYSGKILQDANTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K P G + A SAP PA +TA VP
Sbjct: 58 SYNIEEKGFIVCMVSKPK-PAAGGPSTPARAAPAATPSAPAPAPPASTAAVPQVP----S 112
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP P + A+A+ A ++ S L G E I Q+ MG + R + R
Sbjct: 113 TPTPASSGAAAASGEAPAFNDP-------SALAMGTQGEAVISQMEAMG---FPRADIDR 162
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RAV+YL +GIPE E + A AA+ A V
Sbjct: 163 AMRAAFFNPDRAVDYLLNGIPENIEQE---HAQARAAAASPSAATTPAAAVAAVAPEATG 219
Query: 242 ANPLDLFPQGLPDVGSGAAGA---------GSLDFLRNSPQFQVLRAMVQANPQLLQPML 292
+P++LF G+ GA G+LDFLRN+P FQ LR +VQ PQ+L+P+L
Sbjct: 220 DDPVNLFEAAAQAGGATGRGAAGAGDAGTLGNLDFLRNNPHFQQLRQLVQQQPQMLEPIL 279
Query: 293 QELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP---QSIQVTPEEREA 349
Q++G NPQL +LI ++Q FL+L+ E +LGD+ G +P I+VT EER+A
Sbjct: 280 QQVGAGNPQLAQLIGQNQEQFLQLLAE-------DLGDE--GELPPGAHEIRVTEEERDA 330
Query: 350 IERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
IERL +GF R V++ +FAC+KNEELAAN+L + E ED
Sbjct: 331 IERLCRLGFSRDSVIQAYFACDKNEELAANFLFEQPDEGED 371
>gi|164665690|gb|ABY66299.1| DNA repair protein RAD23 [Brassica napus]
Length = 327
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 122/351 (34%), Positives = 173/351 (49%), Gaps = 101/351 (28%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKG F+++V ED+V DVK IETV G AA+QMLI++GKVL+D+TT+E
Sbjct: 1 MKIFVKTLKGDRFEIQVNLEDSVADVKKNIETVMG---VTAAEQMLIHKGKVLEDETTME 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
N+V+E S + +M KR T +++ + PQ A P++T
Sbjct: 58 ANEVSEKSIIAVM----KRKHASTVTSTSSASLKPQVQAAHPSST--------------- 98
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
AS + + SESG IQQIL+M GTW R+ V
Sbjct: 99 ----------ASNMTYESISESG------------------IQQILEMVSGTWSREAVAY 130
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
AL A N+ ++AVEYLY G+PEQ+E P + TQ P+ +Q
Sbjct: 131 ALYFASNDLDKAVEYLYFGLPEQSE------DPHKTEGTQEHTQEPEASQ---------- 174
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
A SLD LRN+P+F+ +R +VQ++P L+ +L+ + + NPQ
Sbjct: 175 ----------------DAIQEWSLDALRNTPEFEYVRPLVQSDPSFLEEILEVIEEHNPQ 218
Query: 302 LVRLIQEHQADFLRLI-----------------NEPVQGGEGNLGDQLAGL 335
LV+ I +++ADFLRL+ NEP GGE G+Q+
Sbjct: 219 LVQFILDNKADFLRLVLDQPQEHQDDDVLHFQSNEPNNGGES--GNQVGKF 267
>gi|74224982|dbj|BAE38204.1| unnamed protein product [Mus musculus]
Length = 322
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 122/326 (37%), Positives = 174/326 (53%), Gaps = 52/326 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 118
Query: 124 APTPAPASASVSSVSATSESGVYG---------HAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S S SG AAS LV G+ E + +I+ MG +
Sbjct: 119 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QPA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQPA- 223
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+
Sbjct: 224 ----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQ 261
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEP 320
LG++NPQL++ I HQ F++++NEP
Sbjct: 262 LGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|164660784|ref|XP_001731515.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
gi|159105415|gb|EDP44301.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
Length = 406
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 205/431 (47%), Gaps = 80/431 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VK+L G +F ++V+P D+V VK KI+ QG +PA Q LIY GK+L D+ +
Sbjct: 1 MKLLVKSLAGGNFHIDVEPSDSVGSVKQKIQASQG---HPAENQKLIYSGKILADEKNMG 57
Query: 62 ENKVAENSFVVIMLTKNK-------RP------------------TGEGSTRSTAPTKAP 96
E ++ E F+V+M++K K +P TGE S S P K
Sbjct: 58 EYEIKEKDFLVVMVSKPKAKKVESDKPVSADSSAQAAPAPASAAATGE-SALSATPAKPK 116
Query: 97 QSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAG 156
S TPAA+ A + TPAP+ P +AS S+ S + S ++G
Sbjct: 117 AESPATPAASTPAEAAGASSSNLPSTPAPSNGPTNASGSTGSLQTGS---------FLSG 167
Query: 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN 216
LE A+ I++MG + ++ V RA+R ++NNP+RAVEYL +G+P++ P +R G
Sbjct: 168 AELETAVSSIIEMG---FSKEDVQRAMRMSFNNPDRAVEYLMNGLPDETAAAP-SRTTGV 223
Query: 217 GQAANSPTQMPQPTQPAPVTS-----------SGPNANPL-DLFPQ------GLPDVGSG 258
+P+ PAPVTS PNA +LF Q G G
Sbjct: 224 PATPATPS-------PAPVTSMQETPTGAGAGRAPNAGQSGNLFEQAAAMQSGTNRASEG 276
Query: 259 ------AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQAD 312
A G LD L N LR +++ NP LQP++Q L + NPQL +
Sbjct: 277 LLGEEDAQGRQILD-LGNPQVLSQLRTLLEQNPAALQPLVQALVQSNPQLAEAMSADPEG 335
Query: 313 FLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNK 372
LR++ GEG G+ + +P Q+ E+R +E++ AMG +E +F C +
Sbjct: 336 VLRML-----AGEGLEGED-SFEVPSLQQLADEDRTQVEQIVAMGIPERKAIESYFMCGR 389
Query: 373 NEELAANYLLD 383
N E+A Y +
Sbjct: 390 NLEMAVQYYFE 400
>gi|195402315|ref|XP_002059752.1| GJ16257 [Drosophila virilis]
gi|194155966|gb|EDW71150.1| GJ16257 [Drosophila virilis]
gi|263359664|gb|ACY70500.1| hypothetical protein DVIR88_6g0037 [Drosophila virilis]
Length = 448
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 134/474 (28%), Positives = 211/474 (44%), Gaps = 125/474 (26%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I VK L+ +F ++ PE TV ++K +I +G++ Y +Q LIY G +L DD T+
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKRQIFNERGAE-YFVEKQKLIYAGVILTDDRTIN 59
Query: 62 ENKVAENSFVVIMLTKN----------------------KRPTGEGSTRST--------- 90
KV E F+V+MLT++ ++ E + RST
Sbjct: 60 SYKVDEKKFIVVMLTRDISGTSSGSSNNTNTEAVSSQQARKQAKETTERSTQDEPLVESK 119
Query: 91 -APTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPAS--------ASVSSVSATS 141
A SS+ A T + + + T A +PAPAS +S+ V +
Sbjct: 120 PAVQVKESSSSKKGAKTNKITSEAGEEVGS--TGAGSPAPASTTGSTTDYSSIDLVGELA 177
Query: 142 ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201
+ + A SNL+ G + +++MG + R+ V RA+ A++NNPERAVEYL +GI
Sbjct: 178 NTSLQTRAESNLLMGEEFNRTVASMVEMG---YPREQVERAMAASFNNPERAVEYLINGI 234
Query: 202 PEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAG 261
P++ + PG+ + ++ + + Q LP +
Sbjct: 235 PQEENL----FTPGDDEESSRASNIHQGA------------------ASDLP----AESA 268
Query: 262 AGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV 321
A +FLR+ PQF +R+++ NP LL +LQ++G+ NP L++LI E+Q FL ++N+P+
Sbjct: 269 ADPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPL 328
Query: 322 QGGEGNLGDQL-----------------------------AGLMPQSIQV---------- 342
+ +L AG Q I V
Sbjct: 329 EDEVATNAQRLGRTQSNSSRTENLTSSASQAATTEGQRSAAGSENQPISVALEGDGTVSA 388
Query: 343 ---TPEEREAIERL-----------EAMGFDRAIVLEVFFACNKNEELAANYLL 382
P E A RL +A+GF A+VL+ +FAC K+EELAAN+LL
Sbjct: 389 ERNVPTESLATIRLTPQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLL 442
>gi|320586564|gb|EFW99234.1| uv excision repair protein [Grosmannia clavigera kw1407]
Length = 400
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 146/411 (35%), Positives = 209/411 (50%), Gaps = 47/411 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E++P +T+ VK KI +G + Q LIY GK+LKD+ T+E
Sbjct: 1 MKVTFKDLKQQKFVIEIEPSETIAAVKQKISDERG---WAPKTQKLIYSGKILKDEDTVE 57
Query: 62 ENKVAENSFVVIMLTKNK---RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
K+ E FVV ++ K K + + P +A +A A A A +A
Sbjct: 58 SYKIEEKGFVVCVVNKPKPAPVAESSSAASPSTPARASAVAATPAAPAAAAAASSAAIAQ 117
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
P+PA +A ++ ATS + ++ G L+ AI + MG ++R
Sbjct: 118 AAVAATPSPAARAAGPTAGGATSYTD-----PNSFSVGPALQEAITNMEAMG---FERSQ 169
Query: 179 VVRALRAAYNNPERAVEYLYS--GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ A+RAAYNNP+RAVEYL + GIP+ + P A G A + A +
Sbjct: 170 ISAAMRAAYNNPDRAVEYLLTLQGIPDNLQPPPAAAGAGAESEAAAAAPAAAAAPAAGIE 229
Query: 237 SSGPNANPLDLFPQGLPDVGS--------------------GAAGAGSLDFLRNSPQFQV 276
+ N DL Q GS G+ G G+LDFLR++ QFQ
Sbjct: 230 EHPESVNLFDLAAQHGQGGGSRGAAAQPSADSAAAAAAAAAGSQGLGNLDFLRHNAQFQQ 289
Query: 277 LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLM 336
LR +VQ PQ+L+P+LQ+LG NPQL +LI ++ FL L++E GD+ +
Sbjct: 290 LRQVVQQQPQMLEPILQQLGAGNPQLAQLIAQNPDQFLSLLSED--------GDEDDAPL 341
Query: 337 P---QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
P Q+I VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 342 PPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 392
>gi|449300177|gb|EMC96189.1| hypothetical protein BAUCODRAFT_33528 [Baudoinia compniacensis UAMH
10762]
Length = 392
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 199/411 (48%), Gaps = 56/411 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++ +P +T+ +K KI +G + + Q LIY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQQKFTIDAEPSETIGALKRKISEEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E F+V M +K P AP+ P+ A + P P
Sbjct: 58 SYKIEEKGFIVCMTSK--------------PKAAPKPVEPSTPAQAPSTPAAPPAPVAAP 103
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + S + S + + S L G + A+ + MG + RD + R
Sbjct: 104 NTTAAQPPPTPSPAPASTAAADPASWNDPSALAMGEQRQAAVANMEAMG---FPRDQIDR 160
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RAVEYL +GIP AE + A A A+N P Q PA ++G
Sbjct: 161 AMRAAFFNPDRAVEYLLNGIPASAEQEQRAAATPQRPASNQPAPQQQAQPPAQTGNTGAT 220
Query: 242 A--NPLDLFPQG------------------------LPDVGSGAAGAGSLDFLRNSPQFQ 275
P++LF G A A LDFLRN+PQFQ
Sbjct: 221 GGDEPVNLFEAAAQAGQRGGVGGNRGTGDLAAALGGGQGGQGGQATANELDFLRNNPQFQ 280
Query: 276 VLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGL 335
LR +VQ P +L+P+LQ++ NPQL ++I ++ F++L+ E D L
Sbjct: 281 QLRQLVQQQPAMLEPILQQVAAGNPQLAQMITQNPEQFMQLLAED--------ADDDVAL 332
Query: 336 MP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
P Q I VT EEREAIERL +GF+R + ++ +FAC+KNEELAAN+L D
Sbjct: 333 PPGAQQIAVTEEEREAIERLCRLGFERDLAIQAYFACDKNEELAANFLFDQ 383
>gi|320583701|gb|EFW97914.1| Rad23p [Ogataea parapolymorpha DL-1]
Length = 350
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 126/400 (31%), Positives = 188/400 (47%), Gaps = 69/400 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ K K +EV+ D+V K K+ +++ + A+Q +Y GKVL+DD T E
Sbjct: 1 MQVIFKDFKKEKIPLEVELSDSVLSAKEKLASLKECE---ASQVKFVYSGKVLQDDKTFE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ EN V+ M++K K + A + ++P AA P P +
Sbjct: 58 NFKIKENDQVIFMISKPK------KAAAAPEPAAKEQASPAGAAAPVAEPAQPAQEGSSA 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TPA AS +G+ E AIQ I+ MG ++R V +
Sbjct: 112 TPA----------------------AFDASTFASGSVRETAIQNIMAMG---FERPQVEQ 146
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
AL AA+NNP+RAVEYL SGIP++ P A G Q + P A T++ PN
Sbjct: 147 ALTAAFNNPDRAVEYLLSGIPQRTAEPPAAAQSGEPQTEDQPA--------AEDTNASPN 198
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
+ L G A DF+ + LR ++Q P++ + +LQ+L NPQ
Sbjct: 199 PDNLFEAAAAAGSQGQDADQQQEGDFMGS------LREILQQQPEMAEAVLQQLAASNPQ 252
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQ----------------SIQVTPE 345
L ++Q + F+R I + G+ N Q G+ P+ IQ+T E
Sbjct: 253 LAEIVQSNPEAFMRYITD----GDQNALAQALGVPPEYMEGVEGEGELPEGATRIQITQE 308
Query: 346 EREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL-DH 384
E EAI RL +GF+R +V++V+FAC+KNEE+ AN L DH
Sbjct: 309 ENEAINRLCELGFERDLVIQVYFACDKNEEMTANLLFSDH 348
>gi|4966345|gb|AAD34676.1|AC006341_4 Similar to gb|Y12014 RAD23 protein isoform II from Daucus carota.
This gene is probably cut off. EST gb|AA651284 comes
from this gene [Arabidopsis thaliana]
Length = 113
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 97/113 (85%), Gaps = 2/113 (1%)
Query: 280 MVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG--DQLAGLMP 337
MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G +G++ DQ MP
Sbjct: 1 MVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMP 60
Query: 338 QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
S+ VTPEE+E+IERLEAMGFDRAIV+E F +C++NEELAANYLL+H +FED
Sbjct: 61 HSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 113
>gi|325187409|emb|CCA21947.1| UV excision repair protein RAD23 putative [Albugo laibachii Nc14]
Length = 420
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 115/320 (35%), Positives = 168/320 (52%), Gaps = 62/320 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTL+G +F +E +P DTV VK KI+ Q +PA QQ LI+ GK+LKDDT L
Sbjct: 1 MKLTVKTLQGNAFSIEAEPTDTVAVVKTKIQETQE---FPAIQQKLIHAGKILKDDTALS 57
Query: 62 ENKVAENSFVVIMLTKNK--RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
E + EN F+V+M++K K RPT + STA + P P P+ + ++ +T+ P+S
Sbjct: 58 EYNIKENDFIVVMVSKAKGSRPT--SALPSTATAQTPTVPPPVPSTSAVSSSETSTPLSV 115
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ PT + + S ++ AA+ + Q+ DMG + + V
Sbjct: 116 SSSTRPT-TEGTMASGSSGTSTTPSSTAEAAN-----------VGQLCDMG---FPEEQV 160
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
L+AA+ NP+RAVEYL +GIPE V P + AA +PT
Sbjct: 161 RSCLQAAFGNPDRAVEYLMNGIPENL-VNPTS-------AAAAPT--------------- 197
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
+G AGSL+ LRN PQF R +V+ NP L +LQ++G QN
Sbjct: 198 -----------------TGGPSAGSLEQLRNHPQFASFREVVRTNPAALPALLQQIGGQN 240
Query: 300 PQLVRLIQEHQADFLRLINE 319
P+L+RLI E+Q+ FL+++NE
Sbjct: 241 PELLRLIHENQSQFLQMLNE 260
>gi|195469335|ref|XP_002099593.1| GE14546 [Drosophila yakuba]
gi|194185694|gb|EDW99305.1| GE14546 [Drosophila yakuba]
Length = 411
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 198/444 (44%), Gaps = 102/444 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E PE TV ++K KI +G + Y A +Q LIY G +L DD T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 62 ENKVAENSFVVIMLTKNK---RPTGEGSTRSTAPTKA-------PQSSAPTPAATPATAP 111
V E F+V+MLT++ P G S T P+ + + P T
Sbjct: 60 SYNVDEKKFIVVMLTRDSSSSNPNQLGVKESDKLTSTDNLKDSMPREESNHSNSPPVTRN 119
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+ +E TP T + + +++ + A SNL+ G+ + +++MG
Sbjct: 120 SEESILLSETTPISTD-------NLIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMG- 171
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ 231
+ R+ V RA+ A+YNNPERAVEYL +GIP + G N + P
Sbjct: 172 --YPREQVERAMAASYNNPERAVEYLINGIPAEE-----------GTIDNDVNESTNPNG 218
Query: 232 PAPVTSSG---PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
P ++S P+ + D F +FLR+ PQF +R+++ NP LL
Sbjct: 219 PQTGSASSVERPSESNSDPF-----------------EFLRSQPQFLQMRSLIYQNPHLL 261
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG-----------GEGNLGDQLA---G 334
+LQ++G+ NP L++LI E+Q FL ++N+P++ LA
Sbjct: 262 HAVLQQIGQTNPALLQLISENQDAFLNMLNQPIERESESSATVPRVSSARTHSTLANVNN 321
Query: 335 LMPQSIQVTPEEREAI--------------ERLE----------------------AMGF 358
L ++ ER + E LE A+GF
Sbjct: 322 LFSSDLEAASAERSTVATSAAQQSGSAAENEDLEQPLGVSTIRLNRQDQDAIERLKALGF 381
Query: 359 DRAIVLEVFFACNKNEELAANYLL 382
A+VL+ +FAC KNEELAAN+LL
Sbjct: 382 PEALVLQAYFACEKNEELAANFLL 405
>gi|156096789|ref|XP_001614428.1| DNA repair protein RAD23 [Plasmodium vivax Sal-1]
gi|148803302|gb|EDL44701.1| DNA repair protein RAD23, putative [Plasmodium vivax]
Length = 406
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 125/435 (28%), Positives = 200/435 (45%), Gaps = 80/435 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ V+TL+ ++ V EDT+ DVK KIE P +Q LI+ G +LKD++
Sbjct: 1 MKVKVRTLQNNEEEISVDNEDTILDVKKKIEVAFPE--MPCDKQKLIFSGNILKDESKAV 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + EN V++M K + T+ ++ + A + PA Q
Sbjct: 59 D-VLKENDIVIVMACKKIFSSKNNQTKESSSSSANVLKSKEKTPLPANDDQK-------- 109
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
APT A +S +A S LV G L+ I I MG ++R+ V +
Sbjct: 110 NAAPTAAEEGG---------QSKNLNNAESALVTGEKLKETIDNICAMG---FEREAVRK 157
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVA--------------------RAPGNGQAAN 221
A+ A+NNP RA++YL +G P++ EV ++ R N
Sbjct: 158 AMMVAFNNPNRAIDYLTNGFPDENEVNEISAINTMNGMNEMGAANAANAMRDVNETNETN 217
Query: 222 SPTQMPQPTQPAPVTSSGPNA-NPLDLFP-------QGLPDVGSGAAGAGSLDFLRNSPQ 273
+ + S PN N L+ + Q +PD S D R+SP
Sbjct: 218 ETNETNDNSYEREDNESAPNLPNLLNNYSALADNPRQSVPD---------STDQFRSSPF 268
Query: 274 FQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLI-----NEPVQGGEGNL 328
F +LR + +NPQ + +L+ +G+ +P + I+E+Q +F+R I N+ E +L
Sbjct: 269 FNILRDVALSNPQRIPEILEMIGRTDPSFLEFIRENQGEFIRAIQNYGTNDHTANTENDL 328
Query: 329 --GDQLAGLMPQSIQ----------VTP---EEREAIERLEAMGFDRAIVLEVFFACNKN 373
GD A Q+I +TP E E+I++LE++GF + + LE F AC+KN
Sbjct: 329 MAGDAFADQGNQNITDPNNENFNIPITPLNENEMESIKKLESLGFPKHLALEAFIACDKN 388
Query: 374 EELAANYLLDHMHEF 388
EE+AANYL ++M+++
Sbjct: 389 EEMAANYLFENMNDY 403
>gi|47206809|emb|CAG13273.1| unnamed protein product [Tetraodon nigroviridis]
Length = 366
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 138/404 (34%), Positives = 195/404 (48%), Gaps = 54/404 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F +E+ E+TV +K KIE +G D +P + LIY GK+L DD L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKRLKEKIEEEKGKDHFPVSGLKLIYAGKILSDDKPLK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K+++ +FVV+M TK K + T AP + P P + P
Sbjct: 61 EYKISDKNFVVVMATKPKTAAAAPQPSAAG-TTAPPALDPGPDPCRRHRLRPPPPPPRPE 119
Query: 122 TPAPT-----PAPASASVSSVSATSESG--VYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
AP S + SG + A SNLV G + E + +I+ MG +
Sbjct: 120 NRCSIVFIDLTAPPPPLPPSRGSEGSSGTNLIDEAVSNLVTGPSYESMVNEIMLMG---Y 176
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA++NNP+RAVEYL + AE P + AP SP
Sbjct: 177 EREQVVAALRASFNNPDRAVEYLLTAAGPAAEATPASSAPAAPAGTGSP----------- 225
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
+GA G L FLRN PQFQ +R ++Q N LL +LQE
Sbjct: 226 ----------------------AGAEGVNPLSFLRNQPQFQQMRQLIQQNAALLPTLLQE 263
Query: 295 LGKQNPQLVRLIQEHQADFL-------RLINEPVQGGEGNLGDQLAGLMP-QSIQVTPEE 346
+G++NP+L+R+ + LI + AG P + IQVT +E
Sbjct: 264 IGRENPELLRVTLAARTQRCSASTSAPHLIFXXXGATAAGMAGGTAGENPMRYIQVTAQE 323
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+EAIERL+ +GF +V++ FFAC KNE LAAN+LL F+D
Sbjct: 324 KEAIERLKELGFPEGLVIQAFFACEKNENLAANFLLQ--QNFDD 365
>gi|322698416|gb|EFY90186.1| UV excision repair protein (RadW), putative [Metarhizium acridum
CQMa 102]
Length = 400
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 155/414 (37%), Positives = 204/414 (49%), Gaps = 54/414 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F +EV+P + VK KI +G D Q LIY GK+LKDD T+
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTYLISAVKEKISAEKGWD---PKHQKLIYSGKILKDDETVA 57
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGE-GSTRSTAPTKAPQSSAPTPAATPATAPQT 113
+ E FVV M+ K +R + G P + P +A + AA A
Sbjct: 58 SYNIEEKGFVVCMVNKACLFSSQLRRCFNQTGRLTYLQPKEKPAPTAESSAAAAPPATPA 117
Query: 114 AVPISTEPTPAPTPAPASASVSSVSAT------SESGVYGHAASNLVAGNNLEGAIQQIL 167
ST PA PA +S + S+ AT E+G G S L G AI +
Sbjct: 118 QPVASTPAVPA-APAQSSTTQSAAPATPTPQRSGEAG--GETGSGLAMGAERAEAITNME 174
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP 227
MG ++R + A+RAA+NNP+RAVEYL +GIPE + + AR AA PTQ
Sbjct: 175 AMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPENIQQEQHARQ----AAAAGPTQAA 227
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA---------------GSLDFLRNSP 272
Q G N DL Q G +G +LDFLR++P
Sbjct: 228 PAAQEGGEDDGG--VNLFDLAAQAGGGRGGSGSGNAAAAAATATQGGADLSNLDFLRHNP 285
Query: 273 QFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL 332
QFQ LR +VQ PQ+L+P+LQ+LG NPQL +LI + FL L+ G D
Sbjct: 286 QFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPDQFLSLL--------GESADDD 337
Query: 333 AGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
L P Q+I VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 338 VPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 391
>gi|358387006|gb|EHK24601.1| hypothetical protein TRIVIDRAFT_84601 [Trichoderma virens Gv29-8]
Length = 361
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 152/394 (38%), Positives = 202/394 (51%), Gaps = 53/394 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++V+P D + VK KI +G D P +Q+ LIY GK+LKDD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDKISAVKEKISAEKGWD--PKSQK-LIYSGKILKDDDTVQ 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E FVV M+ K K + T A A TP PA V ST+
Sbjct: 58 SYNIEEKGFVVCMVNKPKPAAAPAAAAPPPATPA-PPVASTPVVPPAP-----VQTSTQA 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P TP P + SA + SG L G+ AI + MG ++R +
Sbjct: 112 APPATPTP------NRSAGTPSG--------LAMGSERAEAIANMEAMG---FERTQIEA 154
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+NNP+RAVEYL +GIPE + + Q AN P PA G
Sbjct: 155 AMRAAFNNPDRAVEYLLTGIPESVQQEQQQ------QRANPPQAASTAAAPAADDDGG-- 206
Query: 242 ANPLDLFPQGLPDVGSGAAGA---------GSLDFLRNSPQFQVLRAMVQANPQLLQPML 292
N DL Q SG A A G+LDFLR++ QFQ LR +VQ PQ+L+P+L
Sbjct: 207 VNLFDLAAQRRGAPASGGAPAAAAAAQNDLGNLDFLRHNAQFQQLRQVVQQQPQMLEPIL 266
Query: 293 QELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEEREAI 350
Q+LG NPQL +LI + FL+L+ E + L P Q+I VT EER+AI
Sbjct: 267 QQLGAGNPQLAQLIASNPDQFLQLLGEDAEDD--------VPLPPGAQAISVTEEERDAI 318
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
ERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 319 ERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 352
>gi|50412599|ref|XP_457143.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
gi|49652808|emb|CAG85137.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
Length = 373
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/409 (30%), Positives = 191/409 (46%), Gaps = 61/409 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I K K +EV DTV K K+ + + +V +Q +Y GKVL+D+ TLE
Sbjct: 1 MQIIFKDFKKQKIPIEVDLSDTVLATKEKLASEKDCEV---SQLKFVYSGKVLQDEKTLE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E ++ M++K K+ ++ + P KA + ++ +AT TE
Sbjct: 58 SFKIKEGDSIIFMISKAKK-----ASPAPGPAKAEEKTSTDASAT------------TES 100
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T A + A++ S+ SE G S G++ E IQ I++MG ++R +
Sbjct: 101 TNASSTPAAASGASTNQQGSEPG------SAFAQGDDREATIQNIMEMG---YERPQIEE 151
Query: 182 ALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
ALRAA+NNP RAVEYL +GIPE Q AP N+ + + G
Sbjct: 152 ALRAAFNNPHRAVEYLLTGIPESLQRHADQSTSAPIGESTTNTTNDHEEEHEHDHEGEEG 211
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGS---------LDFLRNSPQFQVLRAMVQANPQLLQP 290
N LF G G + D L Q ++LR +Q NP+L+QP
Sbjct: 212 QGEN---LFEAAAAAAAQGEGGNTTSGAGGAEAGADDLGEDNQMRLLRTALQTNPELIQP 268
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLM------------PQ 338
+L++L NPQ+ LIQ+ F+R G ++G P+
Sbjct: 269 LLEQLAASNPQVAALIQQDPEGFIR----SFLGSGDDMGFDFEEGEGEGVEGAGQGNEPE 324
Query: 339 SIQV--TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
++++ T ++ AI RL +GFDR +V++V+ AC+KNEE+AA+ L M
Sbjct: 325 TVRIALTEQDESAINRLCELGFDRNLVIQVYMACDKNEEVAADILFRDM 373
>gi|221055233|ref|XP_002258755.1| dna repair protein rad23 [Plasmodium knowlesi strain H]
gi|193808825|emb|CAQ39527.1| dna repair protein rad23, putative [Plasmodium knowlesi strain H]
Length = 403
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 125/445 (28%), Positives = 209/445 (46%), Gaps = 103/445 (23%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI V+TL+ ++ V +DT+ DVK KI P +Q LI+ G +LKD++
Sbjct: 1 MKIKVRTLQNNEEEINVDNDDTILDVKKKIGVAFPE--MPYDKQKLIFSGNILKDESKAM 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + EN V++M K ST + +SS+ + A +++P + +
Sbjct: 59 D-ILKENDIVIVMACK-------KIFSSTKNNQTKESSSKDVIKSNEKA--SSLPPNCDQ 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A + AP + E+ A S LV G L+ I I MG ++R+TV +
Sbjct: 109 NNATSNAPEEGT--------ENRSLNSAESALVTGEKLKETIDNICAMG---FERETVKK 157
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+ A+NNP RA++YL +G PE+++V + A N+ T M +
Sbjct: 158 AMMMAFNNPNRAIDYLTNGFPEESQVNEI-------NAINTITGMNE------------- 197
Query: 242 ANPLDLFPQ---------------------------GLPDV---------GSGAAGAGSL 265
NPL+ P LP++ SG + A +
Sbjct: 198 MNPLNAMPDVNETNETNETNETNDNSYEREDNENAPSLPNLLNNYNSLADNSGQSVADTP 257
Query: 266 DFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLI-----NEP 320
D R+SP F +LR + +NPQ + +L+ +G+ +P + I+E+Q +F+R I N+
Sbjct: 258 DQFRSSPFFNILRDVALSNPQRIPEILEMIGRTDPSFLEFIRENQGEFIRAIQNYGNNDH 317
Query: 321 VQGGEGNL--GDQLAGLMPQSIQVTP---------------EEREAIERLEAMGFDRAIV 363
V E +L G++ A P ++ +T E E+I++LE++GF + +
Sbjct: 318 VGSSENDLMEGEEFAD--PGNLNITDPNNENFQIPITPLNENEMESIKKLESLGFPKHLA 375
Query: 364 LEVFFACNKNEELAANYLLDHMHEF 388
LE F AC+KNEE+AANYL ++M+++
Sbjct: 376 LEAFIACDKNEEMAANYLFENMNDY 400
>gi|146161955|ref|XP_001008308.2| UBA/TS-N domain containing protein [Tetrahymena thermophila]
gi|146146601|gb|EAR88063.2| UBA/TS-N domain containing protein [Tetrahymena thermophila SB210]
Length = 373
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 196/385 (50%), Gaps = 77/385 (20%)
Query: 2 MKIFVKTLKGTSF-DVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDT-T 59
MKI +KTLKGT F DV ++ TV ++K KI T + + L+++GK L +D+ T
Sbjct: 1 MKINIKTLKGTDFFDVNLEETATVAELKEKIATEKQKEKDTIK---LVHKGKQLTEDSKT 57
Query: 60 LEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
L E + +N FV++M + K + + AP +A QS + + +T +T
Sbjct: 58 LGELGIKDNDFVILMFFQKK------AEKEDAPQQA-QSDTTSTTSAASTT-------AT 103
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PT P PA VS + T ++G G S+L+ G LE I++I MG ++R V
Sbjct: 104 NPTTVPKPA-----VSQPATTQQTGSQG-TGSDLLQGPELEAKIKEIESMG---FERPKV 154
Query: 180 VRALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
++AL+AAY NPERAV+YL SG IP++ P+Q P Q
Sbjct: 155 LQALKAAYYNPERAVDYLLSGNIPKE------------------PSQQQSPLQ------- 189
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
G G L L +PQFQ + ++ NP LLQP++Q+L +
Sbjct: 190 -----------------GLQGPGVEQLAQLAQNPQFQHIAQAIRQNPALLQPVMQQLAQT 232
Query: 299 NPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGF 358
NP + RL+Q++ FL+L+ N G Q L P +IQVTPEE+ I+ + +MGF
Sbjct: 233 NPDVARLLQQNPQAFLQLL----LAASENEGGQ--TLPPNAIQVTPEEKADIDDIISMGF 286
Query: 359 DRAIVLEVFFACNKNEELAANYLLD 383
D+ LE + C+KN+ELA NYL +
Sbjct: 287 DKNDALEAYITCDKNKELAINYLFE 311
>gi|255636258|gb|ACU18469.1| unknown [Glycine max]
Length = 160
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/107 (72%), Positives = 94/107 (87%), Gaps = 2/107 (1%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P+DTV +VK IETVQG+DVYPAAQQMLI+QGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP-TKAPQSSAPTPAATP 107
ENKV EN+F+VIML+K+K P+GEGST STAP TKAPQ+S PA+TP
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTST-VPASTP 106
>gi|289741355|gb|ADD19425.1| nucleotide excision repair factor NEF2 RAD23 component [Glossina
morsitans morsitans]
Length = 377
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 126/407 (30%), Positives = 190/407 (46%), Gaps = 51/407 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KTL +F VE TV+D+K + + V P QQ LIY G+VL +D L+
Sbjct: 1 MKLTIKTLDQKTFYVEFDDTRTVWDLKSHLHKLPEVGVQPELQQ-LIYAGRVLDNDNALK 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAP-QSSAPTPAATPATAPQTAVPISTE 120
+ E F+V+M K + T P + + +P+A T +T P E
Sbjct: 60 TYSIDERKFLVVMAKKAPPSAAAKEEVAAIKTAKPSEQTRASPSAAAETIKKTEEPKRQE 119
Query: 121 PTPAPTPAPASASVSSVS---------ATSESGVYGHAASNLVAGNNL-------EGAIQ 164
P PA +A+ + + A + N++ + E +Q
Sbjct: 120 KAKTPPPAAQAAASPAATPAATETQPLALDQELQQNPQHRNILEAMDFSPTAAASESLVQ 179
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPT 224
+I+ MG D V RAL A++NNP+RA+EYL GIP+ E P
Sbjct: 180 EIMSMGYAEAD---VRRALLASFNNPDRAIEYLIEGIPDFPEALP--------------- 221
Query: 225 QMPQPTQPAPVTSSGPNANPLD----LFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAM 280
P+ + P+ NP+ G G L+FLR P+F +R +
Sbjct: 222 ---------PLPTIQPDVNPVSGVTVAGIGSGGGGGGGGGAGSPLNFLREDPRFIQMRRV 272
Query: 281 VQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSI 340
++ P+LL +L +G+ NP L+ +I+EHQ DF+ ++NEP EG+ G Q I
Sbjct: 273 IRQRPELLSSVLARIGETNPVLLSIIREHQDDFVAMLNEP--EDEGSEEAPSEGHEAQEI 330
Query: 341 QVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
+T EE AIERL A+GF R IVL+ + AC +NEE A++L HM +
Sbjct: 331 SLTEEESNAIERLVALGFPRQIVLQAYIACERNEEQTADFLCRHMED 377
>gi|114205486|gb|AAI11407.1| Rad23b protein [Rattus norvegicus]
Length = 225
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 136/239 (56%), Gaps = 37/239 (15%)
Query: 160 EGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQA 219
E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P
Sbjct: 1 ENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP----- 52
Query: 220 ANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRA 279
P V++ P + + + +G L+FLRN PQFQ +R
Sbjct: 53 ------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQ 100
Query: 280 MVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG--------------- 324
++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 101 IIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGG 160
Query: 325 -EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 161 GGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 218
>gi|428673091|gb|EKX74004.1| uv excision repair protein rad23, putative [Babesia equi]
Length = 317
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 186/395 (47%), Gaps = 93/395 (23%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLK +V+V+ TV V +IE + + PA Q LI+ GK+LK +
Sbjct: 1 MKLTVKTLKNVQVEVQVQETSTVEAVMEQIEQLLPN--MPAKTQKLIHSGKILKRE---- 54
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
M K+ +G +K +SSAP P A E
Sbjct: 55 ------------MQIKDYPDIKDGDKVIVIASKVVESSAPQPVAK-----------VEEK 91
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP TP A S VY + +S L+ G L+ + +I +MG ++R V R
Sbjct: 92 TPESTPVQQEAPEKS------EPVYDNPSSKLLIGQELQDNVNRICEMG---FERAMVER 142
Query: 182 ALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
A+ AA+NNPERAVE+L +G IPE P + P
Sbjct: 143 AMAAAFNNPERAVEFLSTGHIPE----------------------------PEAMGMDLP 174
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
+ P+ DV + L++ P F+ LR +VQ++PQ+LQ +L +G+ NP
Sbjct: 175 SMEHSGDMPRTNEDV---------IQMLQSHPMFEQLRQVVQSDPQMLQQLLDNIGRNNP 225
Query: 301 QLVRLIQEHQADFLRLINEPVQGGE-----------GNLGDQLAGLMPQSIQVTPEEREA 349
+L++ I EHQ +F+ LI+ G E ++ D+ P I +T E E+
Sbjct: 226 ELLQSIIEHQDEFMDLIS---SGAEVEPFGMPLERPDSVNDENN---PNIISLTESEMES 279
Query: 350 IERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
++RLEA+GF R V+E F AC+KNE+LAANYLL+H
Sbjct: 280 VQRLEALGFPRPAVIEAFLACDKNEQLAANYLLEH 314
>gi|168046898|ref|XP_001775909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672741|gb|EDQ59274.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 174
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 109/202 (53%), Gaps = 37/202 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG FD++V P +TV +VK +IE QG ++P AQQ+LIYQGKVLKD+TT+E
Sbjct: 1 MKISVKTLKGNYFDLDVTPLETVINVKKRIEDSQGEQLFPCAQQLLIYQGKVLKDETTME 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEG----STRSTAPTKAPQSSAPTPAATPATAPQTAVPI 117
+NKV EN F V+ML+K +G S R+ K + T V
Sbjct: 61 DNKVLENEFFVVMLSKTSNILKQGLCNLSMRAFFCVKYLNQHSGIGKGTAHFQSSRNV-- 118
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
NLVAG NLE Q+ILD+GGG+WD D
Sbjct: 119 -------------------------------CCFNLVAGINLESKAQEILDIGGGSWDFD 147
Query: 178 TVVRALRAAYNNPERAVEYLYS 199
TVV ALRAA NN ERA+EYL S
Sbjct: 148 TVVHALRAASNNVERALEYLSS 169
>gi|400602559|gb|EJP70161.1| UV excision repair protein Rad23 [Beauveria bassiana ARSEF 2860]
Length = 397
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 147/410 (35%), Positives = 204/410 (49%), Gaps = 50/410 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSD------VYPAAQQ---------- 45
MK+ + LK F +EV+P D + VK +I T +G D +Y A +
Sbjct: 1 MKVTFRDLKQQKFTLEVEPTDLISAVKERISTEKGWDPKHQKLIYSGADEQNPAPTAPPF 60
Query: 46 MLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA 105
+ + GK+LKD+ T+ + E FVV M+ K K + + AP P A A
Sbjct: 61 LTNFLGKILKDEETVASYNIEEKGFVVCMVNKPKEKPAAATPSAAAPPATPAQPAQGTPA 120
Query: 106 TPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQ 165
PA Q++ ++ PTP S AT+ +G G +A L G AI
Sbjct: 121 APAAPNQSSASLTANIPATPTPN------RSTDATAPAG--GDSAG-LTMGTERAAAITS 171
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
+ MG ++R + A+RAA+NNP+RAVEYL +GIPE + + AR A
Sbjct: 172 MEAMG---FERSQIEAAMRAAFNNPDRAVEYLLTGIPENIQQEQQARQAAAAAPAAPAAP 228
Query: 226 MPQPTQPAPVTSSGPNANPLDLFPQ---------GLPDVGSGAAGAGSLDFLRNSPQFQV 276
T G + N DL Q G D + AA G+LDFLR +PQFQ
Sbjct: 229 Q---TTQTGGDEEGGSVNLFDLAAQHGGSGGSRGGSGDAAAAAADLGNLDFLRTNPQFQQ 285
Query: 277 LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLM 336
LR +VQ PQ+L+P+LQ+LG NPQL +LI + FL+L+ E + L
Sbjct: 286 LRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDAFLQLLGEDAEDD--------VPLP 337
Query: 337 P--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
P Q+I VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 338 PGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 387
>gi|346324523|gb|EGX94120.1| UV excision repair protein (RadW), putative [Cordyceps militaris
CM01]
Length = 1066
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 195/388 (50%), Gaps = 30/388 (7%)
Query: 5 FVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENK 64
+ LK F +EV+P D + VK KI +G D Q LIY GK+LKD+ T+
Sbjct: 689 LAQDLKQQKFTLEVEPADLISAVKEKISAEKGWD---PKHQKLIYSGKILKDEETVASYN 745
Query: 65 VAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPA 124
+ E FVV M+ K K + + AP P + A PA Q++ ST P
Sbjct: 746 IEEKGFVVCMVNKPKEKPAAAAPSAVAPPATPAQPVTSTPAVPAAPNQSSANQSTAPPVT 805
Query: 125 PTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALR 184
P+P ++ + + A A+ L G AI + MG ++R + A+R
Sbjct: 806 PSPNRSADAAAPTGAD---------AAGLTMGAERAAAITSMEAMG---FERSQIEAAMR 853
Query: 185 AAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANP 244
AA+NNP+RAVEYL +GIP+ + + AR +A +P P N
Sbjct: 854 AAFNNPDRAVEYLLTGIPDNIQQEQQARQAAAAASAAAPAAPAAPQTTQTGGDEEGGINL 913
Query: 245 LDLFPQGLPDVGS---------GAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQEL 295
DL Q GS +A G+LDFLR +PQFQ LR +VQ PQ+L+P+LQ+L
Sbjct: 914 FDLAAQHGGTGGSRGSSGDAGGASADLGNLDFLRTNPQFQQLRQVVQQQPQMLEPILQQL 973
Query: 296 GKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEA 355
G NPQL +LI + FL L+ GE D Q+I VT EER+AIERL
Sbjct: 974 GAGNPQLAQLIASNPDAFLHLL------GEDAEDDVPLPPGAQAISVTEEERDAIERLCR 1027
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLD 383
+GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 1028 LGFDRDQAIQAYFACDKNEELAANFLFD 1055
>gi|217069976|gb|ACJ83348.1| unknown [Medicago truncatula]
Length = 159
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 100/159 (62%), Positives = 117/159 (73%), Gaps = 4/159 (2%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+FVKTLKGT F++EV P+DT+ VK IETVQG DVYPAAQQMLI+QGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTA-PTKAPQSSA---PTPAATPATAPQTAVPI 117
ENKVAENSF+VIML+K+K +G+GST S A P KAPQ+SA TP + + A
Sbjct: 61 ENKVAENSFIVIMLSKSKPASGKGSTTSNAPPAKAPQTSAAPTSTPPVSVSPQAPAATAA 120
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAG 156
AP+PAPA A +SS +AT S VYG AASNLVAG
Sbjct: 121 PPASVAAPSPAPAPAPISSATATEGSDVYGQAASNLVAG 159
>gi|358333357|dbj|GAA51877.1| UV excision repair protein RAD23 [Clonorchis sinensis]
Length = 504
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 128/368 (34%), Positives = 184/368 (50%), Gaps = 70/368 (19%)
Query: 24 VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK--NKRP 81
V DVK KIE +G++ + A+ Q LI+ GKV++D+ TL++ KV + F+V+M +K P
Sbjct: 137 VSDVKKKIEAEKGNE-FSASSQTLIHSGKVMEDEKTLKQYKVTDKGFIVVMAVSKPSKEP 195
Query: 82 TGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATS 141
T A K QS PA T A+ +T VP S P A+ SAT
Sbjct: 196 TASVEKLPEA-AKPVQSEQSIPANTVASVQETTVPRSDVP----------AAAGPESATG 244
Query: 142 ESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG- 200
ES LV G E AI +I+ MG ++R V+RA+RA++NNP+RAVEYL SG
Sbjct: 245 ESA--------LVTGAEYERAISEIVGMG---FERSMVIRAMRASFNNPDRAVEYLLSGN 293
Query: 201 IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAA 260
IP V P G+ ++ P + S + +P+
Sbjct: 294 IPNAV----VREQPAGGR-----ERVDTPGDEHSASESPSSEDPISA------------- 331
Query: 261 GAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP 320
L + PQFQ +RA+VQANP+LL ++Q++G N +L+RLIQE++ FL +N P
Sbjct: 332 -------LASLPQFQQMRALVQANPELLPQLIQQIGADNSELLRLIQENEQGFLEFLNAP 384
Query: 321 VQGGEG-----------NLGDQLAGLMPQSI-QVTPEEREAIERLEAMGFDRAIVLEV-- 366
+ G G+ G Q I +T EER AIERL+A+GF +V++V
Sbjct: 385 ISQDAGEPEGIESSETTTPGNVRQGEPRQIILTMTQEERAAIERLQALGFPEELVIQVNE 444
Query: 367 -FFACNKN 373
F N+N
Sbjct: 445 GIFVLNRN 452
>gi|198436382|ref|XP_002131525.1| PREDICTED: similar to RAD23a homolog [Ciona intestinalis]
Length = 335
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 123/397 (30%), Positives = 188/397 (47%), Gaps = 75/397 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTLK F +E+ E+ V +K KI +G+D +P A Q LIY GK+L D +L+
Sbjct: 1 MLITIKTLKQNIFKIEIDEEEPVKVLKEKIAKEKGNDNFPVAGQKLIYAGKILDDSKSLK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K+ + F+V M+TK K + T A ++ T P P AV +T
Sbjct: 61 EYKIEDGKFIVAMVTKPKSVSPPAPTPPEPTEAAVTTTTSTQEEQPTNQP--AVASTTSS 118
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+PA A +SAS +VS A S LV G + I+ MG ++R+ VV
Sbjct: 119 SPAEEQA-SSASPLNVS---------QAESTLVTGEAYNELVTSIMAMG---FERERVVA 165
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ--PTQPAPVTSSG 239
AL A++ NP+RAVEYL SG V AP P Q P PT+ AP++ S
Sbjct: 166 ALNASFCNPDRAVEYLMSGTTN------VGTAP--------PQQQPDTIPTENAPISDS- 210
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
+ L ++P+ QV+ +Q NP LLQP LQ++ + N
Sbjct: 211 -----------------------NVFNDLMDNPEIQVMAQQIQQNPHLLQPYLQQIEQSN 247
Query: 300 PQLVRLIQEHQADFLRLINE-----------PVQGGEGNLGDQLAGLMPQSIQVTPEERE 348
P L ++ H +F+ + P G G + ++VT E++
Sbjct: 248 PSLFNMVSSHPEEFVSFLTTLRRGTSQTQPPPASAGAGGVS---------YVRVTAGEQQ 298
Query: 349 AIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
IE+L+++GF + ++ + AC+KN ++AAN+LL +
Sbjct: 299 DIEQLKSLGFSESECVQAYMACDKNLDMAANFLLSDI 335
>gi|336470133|gb|EGO58295.1| hypothetical protein NEUTE1DRAFT_117137 [Neurospora tetrasperma
FGSC 2508]
gi|350290173|gb|EGZ71387.1| UV excision repair protein Rad23 [Neurospora tetrasperma FGSC 2509]
Length = 383
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 137/414 (33%), Positives = 198/414 (47%), Gaps = 61/414 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E++P +T+ VK KI +G + Q LIY GK+LKD+ T+E
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETISKVKQKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPA--------------ATP 107
K+ E FVV ++ K P+++AP PA A P
Sbjct: 58 SYKIEEKGFVVCVVNK------------------PKTTAPKPAESSSSAAAPATPAAAAP 99
Query: 108 ATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQIL 167
A+ P + A + + + ++ + + A+ L G AI +
Sbjct: 100 ASTPAPPAAPAASSAAAAASSTPTPARTAAAPEAAPAAGARDANALAMGEQRAEAIANME 159
Query: 168 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMP 227
MG ++R + A+RAA+ NPERAVEYL +GIP + Q +R P AA
Sbjct: 160 AMG---FERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPAAAPAAAAQ 216
Query: 228 QPTQPAPVTSSGPNANPLDLFPQ-----------GLPDVGSGAAGAGSLDFLRNSPQFQV 276
+ A N DL Q G G+ AAG G+LDFLRN+ QFQ
Sbjct: 217 AASPAAAGGDDDDQVNLFDLAAQLGNSAGGRGARGAEGAGAEAAGLGNLDFLRNNAQFQQ 276
Query: 277 LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLM 336
+R +VQ PQ+L+P+LQ+LG NPQL ++I ++ FL NL +
Sbjct: 277 MRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL------------NLLGEGGEGG 324
Query: 337 PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
I VT EER+AIERL +GF + ++ +FAC+K+EELAAN+L D E +D
Sbjct: 325 SVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEELAANFLFDQGPEEDD 378
>gi|388580050|gb|EIM20368.1| UV excision repair protein Rad23 [Wallemia sebi CBS 633.66]
Length = 336
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 181/392 (46%), Gaps = 60/392 (15%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M ++ +KTL+ F V V+ DT+ +K KIE QG + Q LI+ GK+L DD T+
Sbjct: 1 MPEVTIKTLQQKVFKVVVEDSDTIATLKQKIEADQG---FAVNTQKLIFSGKILADDRTI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E ++ E F+V+M++K P PAT + + +
Sbjct: 58 ESLQIKEKDFLVVMVSK-------------------------PKPQPATPKKDEAKVE-Q 91
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P + S +NL G+ LE A+ +++MG +DR V+
Sbjct: 92 PAQKSEQPEQPEQPQQTQQPASSSTPSQPGNNLAMGSELETAVSNMVEMG---FDRAQVM 148
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
+A+RA++NNPERAVEYL +GIP Q P Q QP Q + + P
Sbjct: 149 KAMRASFNNPERAVEYLMTGIP---------------QHLQQPEQSEQPQQQSEQQPNQP 193
Query: 241 NANPLDLFP----QGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
PL+LF Q P G A G Q L Q NP LLQ ++QE+
Sbjct: 194 TGAPLNLFDAARQQSSPAAGQAAPGGDG-----QQAQLAELVQAAQENPALLQSLIQEIA 248
Query: 297 KQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM 356
+ NP L +L+ ++ L L++ +G EG+ D+ Q I +T E+ EA+ RLEA+
Sbjct: 249 QSNPTLAQLLAQNPQALLDLLSG--EGAEGDFQDEDGP--GQVIHLTEEQAEAVARLEAL 304
Query: 357 GFDRAIVLEVFFACNKNEELAANYLLDHMHEF 388
GF R + + AC NEELAANYL + +
Sbjct: 305 GFSREMSAQALLACEGNEELAANYLFEQQEDL 336
>gi|291407417|ref|XP_002719904.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 488
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 133/433 (30%), Positives = 201/433 (46%), Gaps = 95/433 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ ++ +F +++ P TV +K KIE QG D +P A Q L+Y G+VL DD L
Sbjct: 1 MRLTLEAGPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLR 60
Query: 62 ENKVAENSFVVIMLTK-----------NKRPTGEGSTRSTAPTKA---------PQSSAP 101
+ ++ E+ V +++ + G+ + A A P + A
Sbjct: 61 DCQIHEHHAVTVLVARPEAATTAAPATATATAGQSHPATAASAGAGAPARGPALPAAPAT 120
Query: 102 TPAATPATAPQTA---VPISTE-------PTPAPTPAPASASVSSVSATSESGVYGHAAS 151
+ ATPA A T VP ++ P P+PTP A A SS + SE AA
Sbjct: 121 STRATPAPASSTCAMSVPATSTRATPRLPPCPSPTPDDAIAGPSSRAQPSE-----QAAR 175
Query: 152 NLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP----EQAEV 207
L+ E + +I+ MG ++R+ V+ ALRA++NNP RAVEYL G+P AEV
Sbjct: 176 ALLTRPASEQMVAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRASAAEV 232
Query: 208 QPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGS--L 265
+P PQ SS A D G+ +G+G L
Sbjct: 233 EP-----------------PQAGSSGAGRSSAVEA-----------DEGAATSGSGGHPL 264
Query: 266 DFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLIN------- 318
D LRN P+F+ LR ++Q P LL +LQ L Q+PQL ++++Q + ++
Sbjct: 265 DVLRNLPEFEELRRIIQHFPSLLPGVLQRLCPQDPQLEDQLRQYQEYLVHMLTTEEEEDG 324
Query: 319 ----------EPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFF 368
+ + E D I+VTP+E+ AIERL+A+GF +V++ +F
Sbjct: 325 SEGGGGGEGVDNAETAETVREDD------SYIEVTPQEQAAIERLKALGFPEGLVIQAYF 378
Query: 369 ACNKNEELAANYL 381
AC KNE LAA+ L
Sbjct: 379 ACEKNEILAASLL 391
>gi|322707150|gb|EFY98729.1| nucleotide excision repair protein RAD23 [Metarhizium anisopliae
ARSEF 23]
Length = 383
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 147/407 (36%), Positives = 200/407 (49%), Gaps = 57/407 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG--KVLKDDTT 59
MK+ + LK F +EV+P D + VK KI +G D Q LIY G K+LKDD T
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTDLISAVKEKISGEKGWD---PKHQKLIYSGLGKILKDDET 57
Query: 60 LEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
+ + E FVV M+ K P + + + + AP ++ P A+ P ST
Sbjct: 58 VASYNIEEKGFVVCMVNK---PKEKPAPAAESSAAAPPATPAQPVASTPAVPAAPAQPST 114
Query: 120 EPTPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
+ AP TP P + E+G G S L G AI + MG ++R
Sbjct: 115 TQSAAPATPTP--------QRSGEAG--GETGSGLAMGAERAEAITNMEAMG---FERSQ 161
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
+ A+RAA+NNP+RAVEYL +GIPE + + AR QAA +
Sbjct: 162 IEAAMRAAFNNPDRAVEYLLNGIPENIQQEQHAR-----QAA-AAGPTQATPAAPAAQEG 215
Query: 239 GPNANPLDLFP-------------------QGLPDVGSGAAGAGSLDFLRNSPQFQVLRA 279
G + ++LF G A G+LDFLR++PQFQ LR
Sbjct: 216 GEDDGGVNLFDLAAQAGGGGRGGSGSGSAAAAAAGATQGGADLGNLDFLRHNPQFQQLRQ 275
Query: 280 MVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP-- 337
+VQ PQ+L+P+LQ+LG NPQL +LI + FL L+ E D L P
Sbjct: 276 VVQQQPQMLEPILQQLGAGNPQLAQLIAANPDQFLSLLGESA--------DDDVPLPPGA 327
Query: 338 QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
Q+I VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 328 QAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 374
>gi|313224970|emb|CBY20762.1| unnamed protein product [Oikopleura dioica]
Length = 352
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 140/402 (34%), Positives = 199/402 (49%), Gaps = 76/402 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSD---VYPAAQQMLIYQGKVLKDDT 58
M++ VKTL+ +F VE +P V D K IE SD VY A Q LIYQGK+L+D+
Sbjct: 1 MQLTVKTLQQKAFKVEAEPSILVKDFKALIEEAGKSDHGGVYKAEAQKLIYQGKILEDEK 60
Query: 59 TLEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
+EE ++ E F+V+M+TK K + AP ++A T ++TPA + + +
Sbjct: 61 KIEEYQITEKGFIVLMVTKPKVVPKPVEPKPEPTPAAPAAAASTESSTPAESTSSTDATT 120
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P T A A V H A NL+A MG +
Sbjct: 121 TPSQPVATEAAAP-------------VNPHVA-NLMA-------------MG---FPESQ 150
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V +AL AA+NNPERAVEYL +GIPE+ Q T P+ + T++
Sbjct: 151 VKQALSAAFNNPERAVEYLMNGIPEELLAQM--------------TTTPEAAAASAGTTA 196
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
+A P P VGS +L+ +RN PQFQ +R +++ NPQLL +Q+L +
Sbjct: 197 DASAAPTVTAPSR--SVGS------TLEQIRNEPQFQQIRTLIRNNPQLLSQFIQQLQIE 248
Query: 299 NPQLVRLIQEHQADFLRLINEPVQGGEGN-LGDQLA--------GLMPQ---------SI 340
NP+ I +Q +F+ +INEP GE GD A G P+ +
Sbjct: 249 NPEAFAAISANQQEFINMINEP---GEAQPAGDDSAEAAAPATPGDGPRVRQTEDGRVML 305
Query: 341 QVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
++T E+R +IERL+ +GF VL+ FFAC+KNE AAN+LL
Sbjct: 306 EITAEDRASIERLKELGFPEQAVLQAFFACDKNENDAANFLL 347
>gi|448122735|ref|XP_004204517.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|448125012|ref|XP_004205075.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358249708|emb|CCE72774.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358350056|emb|CCE73335.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 123/409 (30%), Positives = 187/409 (45%), Gaps = 68/409 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ K K ++V+ DTV K K+ + + A+Q +Y GKVL DD TLE
Sbjct: 1 MQVIFKDFKKQKVPIDVELTDTVLSTKEKLAAEKDCE---ASQLKFVYSGKVLPDDKTLE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E ++ M++K K+ +T ++ PQ+S P ++ +E
Sbjct: 58 SLKIKEGDAIIFMISKTKKS-------ATPSSEQPQASKPEKESSK----------ESED 100
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+PTPA S + S ++ G+ E I+ I++MG ++R V
Sbjct: 101 KGSPTPAAEEESGAGASGAQAGSIFAQ-------GDERENNIRNIMEMG---YERPQVEA 150
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAA+NNP RAVEYL +GIPE +AP +A+S P + N
Sbjct: 151 ALRAAFNNPHRAVEYLLTGIPESL------QAPQPNYSASSGGAQPAVEAESTHNEDEEN 204
Query: 242 ANPLDLFPQGLPDVG--------SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQ 293
+ +LF A GAG D L Q ++LRA +Q NP+L+QP+L+
Sbjct: 205 EHGENLFEAAAAAAAQEGGAGDQDAAEGAG--DDLNEENQMRLLRAALQTNPELIQPLLE 262
Query: 294 ELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS-------------- 339
+L NPQ+ LIQ+ F+R G G D
Sbjct: 263 QLAASNPQVAALIQQDPEGFIRSF-----LGSGEDLDFEFEEGEGDAEGGESGGQGEQPG 317
Query: 340 ---IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
I++T ++ AI RL +GFDR +V++V+ AC+KNEE+AA+ L M
Sbjct: 318 TVRIELTEQDESAINRLCELGFDRNLVIQVYMACDKNEEVAADILFRDM 366
>gi|156051332|ref|XP_001591627.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980]
gi|154704851|gb|EDO04590.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 209/398 (52%), Gaps = 48/398 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E +P + + +VK KI +G + A+QQ LIY GK+L+D T+E
Sbjct: 1 MKLTFKDLKQAKFVIEAEPTELISEVKDKISKEKG---WEASQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V M++K K S+ + AP+ ++A TPA A A + ST
Sbjct: 58 SYHIEEKGFIVCMVSKPKAAPAASSSATKAPSTPAPATAATPAPPAAPAHSS----STTN 113
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T P TP+PA ASV SV AT + G L G I ++ MG ++R +
Sbjct: 114 TAVPATPSPAGASVPSVQATPSNETTG-----LAMGAERSAQIAEMEAMG---FERSQID 165
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
A+RAA+ N ERA+EYL +GIPE + A +P +QPA +G
Sbjct: 166 LAMRAAFFNSERAIEYLLTGIPENLLQEQ------RQAAPAAPAAGQASSQPA----AGG 215
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLD------------FLRNSPQFQVLRAMVQANPQLL 288
P+DLF G A FLRN+ QFQ LR +VQ PQ+L
Sbjct: 216 EDEPVDLFAAAANAGNRGGAARADNAAAPGGGGLGNLDFLRNNAQFQQLRQVVQQQPQML 275
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEE 346
+P+LQ++G NPQL LI +H FL+L++E D A L P Q+I+V+ EE
Sbjct: 276 EPILQQVGAGNPQLATLISQHPEQFLQLLSEN--------ADDDAPLPPGAQAIEVSGEE 327
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
R+AIERL +GF+R ++ +FAC+KNEELAAN+L +
Sbjct: 328 RDAIERLCRLGFNRDQAIQAYFACDKNEELAANFLFEQ 365
>gi|302916881|ref|XP_003052251.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
gi|256733190|gb|EEU46538.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
Length = 389
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 150/408 (36%), Positives = 202/408 (49%), Gaps = 54/408 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P + + VK KI +G D P Q+ LIY GK+LKD+ T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTELISAVKEKISAEKGWD--PKLQK-LIYSGKILKDEETVA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAP-----QSSAPTPAATPATAPQTAVP 116
+ E FVV M+ K K + S+AP P + A A +T+ Q AVP
Sbjct: 58 SYNIEEKGFVVCMVNKPKPKPAAPAAESSAPPATPAQPIANTPAAPAAPVQSTSHQAAVP 117
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
+ PTP S + SG + S L G AI + MG ++R
Sbjct: 118 AT------PTP--------QRSVEAGSGAPSNEPSGLAMGAQRAEAIANMEAMG---FER 160
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ A+RAA+NNP+RAVEYL +GIPE + + AA S Q P A
Sbjct: 161 SQIEAAMRAAFNNPDRAVEYLLTGIPENIRQEQQQQQQQQHHAA-SGGQAPAAQPAAHGG 219
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGA------------------GSLDFLRNSPQFQVLR 278
G + N DL Q G+ G G+LDFLR++ QFQ LR
Sbjct: 220 DEGGSVNLFDLAAQRGGSGRGGSGGNQAAAAAAAAAAAGQGGDLGNLDFLRHNAQFQQLR 279
Query: 279 AMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP- 337
+VQ PQ+L+P+LQ+LG NPQL LI + FL+L+ E D L P
Sbjct: 280 QVVQQQPQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGED--------ADDDVPLPPG 331
Query: 338 -QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
Q+I VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 332 AQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 379
>gi|403221228|dbj|BAM39361.1| DNA repair protein [Theileria orientalis strain Shintoku]
Length = 323
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 127/398 (31%), Positives = 193/398 (48%), Gaps = 84/398 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQ---QMLIYQGKVLKDDT 58
M + VKTLK +VEV TV D+ ++E ++ P Q Q LI+ GK+LK +
Sbjct: 1 MNLKVKTLKNVEVEVEVAESATVEDLMKRVE-----ELLPNMQANSQKLIHAGKILKREL 55
Query: 59 TLEEN-KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPI 117
L + + E ++++ S+ T++ + + P +T A A V
Sbjct: 56 LLSDYPDIKEGDKIIVI--------------SSKKTESAKPAEPKLDSTSAVATPPKVET 101
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
+TE + P A+ +VS S S S S LV G+ L+ I +I +MG +DR
Sbjct: 102 ATENSQN-LPRTATPNVSQESHQSPS-------SRLVMGSELDQNINRICEMG---FDRA 150
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
+V RA+ AA+NNPERAVE+L +G +P P T
Sbjct: 151 SVERAMAAAFNNPERAVEFLSTG------------------------NIPSVNLENPGTQ 186
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
+ P + A G L++ P F+ +R VQ++PQLLQ +L+ +G+
Sbjct: 187 NTP------------AEQAENAGGEDVFRMLQSHPMFEQIRQAVQSDPQLLQQILENIGQ 234
Query: 298 QNPQLVRLIQEHQADFLRLIN-----EPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIER 352
NP+L++ I + Q +F+ LIN +P E N P + +T E E+IER
Sbjct: 235 TNPELLQTIIQRQDEFMDLINSGAEVDPYSNPETN---------PNIVSLTQVEMESIER 285
Query: 353 LEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
LE +GF R V+E + AC+KNEELAANYLL++ H+F D
Sbjct: 286 LEGLGFSRPAVIEAYLACDKNEELAANYLLENSHDFTD 323
>gi|401396253|ref|XP_003879788.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
gi|325114195|emb|CBZ49753.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
Length = 370
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 131/397 (32%), Positives = 202/397 (50%), Gaps = 39/397 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ ++TL +++V PE+T+F++K K+E Q PA +Q L++ GK+L D ++
Sbjct: 1 MRLRIRTLSNEEAELDVGPEETIFNLKEKVE--QKWPHMPAVRQKLVHAGKILADSQKVK 58
Query: 62 EN-KVAENSFVVIMLTKN-KRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
E + EN +V+M+TK +P G S+ + A S+ +P+ TP+ A
Sbjct: 59 ECPSLKENDRLVVMVTKAVAQPAGASSSAAPAAPAPASSATASPSETPSGDSAAASSAGA 118
Query: 120 EPTPAPTPAPASASVSSVSATSESG---VYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
A ASA S ++ E+G A S L G LE + ++ MG + R
Sbjct: 119 SAVSADASGSASAPAPSGTSEGEAGEALTRTAAESALFTGPQLEETLTHLVAMG---FPR 175
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
D +A+RAA+NNP+RAVEYL +G+P + A G Q A +
Sbjct: 176 DQAEQAMRAAFNNPDRAVEYLMNGMPPEVSAL-FGGASGEAQDAEGDA-IADEGDADGDE 233
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
+ NPL GA LR+ P F +R MVQANP +L +LQ +G
Sbjct: 234 GDEDDGNPL---------------GA-----LRHHPAFNQIRQMVQANPAMLPQVLQLIG 273
Query: 297 KQNPQLVRLIQEHQADFLRLINEPVQGGEGN---LGDQLAGLMPQSIQVTPEEREAIERL 353
NPQL+ LI ++Q FL ++ GE G G+ IQ+TP+E EA++RL
Sbjct: 274 NSNPQLLELITQNQDAFLEMLQSGQGTGEAGAPGTGFGAGGI----IQMTPDEMEALQRL 329
Query: 354 EAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
EA+GF R +E + AC++NEE+AANYL +++++ D
Sbjct: 330 EALGFSRHQAVEAYLACDRNEEMAANYLFENLNDLGD 366
>gi|119498549|ref|XP_001266032.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
gi|119414196|gb|EAW24135.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
Length = 360
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 135/374 (36%), Positives = 204/374 (54%), Gaps = 46/374 (12%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
VK KI +G +V Q LIY GK+L+DD T+E + E F+V M++K K P+
Sbjct: 10 VKEKISKEKGWEV---PQLKLIYSGKILQDDKTIETYNIEEKGFIVCMVSKPKAPSS--- 63
Query: 87 TRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVY 146
+ P++AP S P+ AA A +A S P+ PA S + + + S +
Sbjct: 64 --AATPSQAP--STPSRAAASTPAAPSAPAPSAAPSAPAVPATPSPAAPAQAPADASAAF 119
Query: 147 GHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
+ S L++G+ E I Q+ MG + R + RA+RAA+ NP+RA+EYL +GIP+ +
Sbjct: 120 -NDPSALLSGSQSEAVISQMESMG---FPRSDINRAMRAAFFNPDRAIEYLLNGIPDNIQ 175
Query: 207 VQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAA------ 260
+ +A AA P + AP ++ G P++LF + G+G
Sbjct: 176 QEQQQQA---AAAAAPPAPSAPSGESAPSSTGG--DEPVNLF-EAAAQAGTGEGTGRGAR 229
Query: 261 --------GAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQAD 312
G +LDFLRN+P FQ LR +VQ PQ+L+P+LQ++ NPQ+ +LI +++
Sbjct: 230 AGAAGAGEGLPNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQ 289
Query: 313 FLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFAC 370
FL+L++E G L P +I VT EER+AIERL +GF R +V++ +FAC
Sbjct: 290 FLQLLSEEDDG----------ALPPGTHAISVTEEERDAIERLCRLGFSRDLVIQAYFAC 339
Query: 371 NKNEELAANYLLDH 384
+KNEELAANYL ++
Sbjct: 340 DKNEELAANYLFEN 353
>gi|126723729|ref|NP_001075850.1| protein RAD23 repair 23 (2L942) [Oryctolagus cuniculus]
gi|1857435|gb|AAB48442.1| oncogene [Oryctolagus cuniculus]
Length = 748
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 151/300 (50%), Gaps = 51/300 (17%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++PE+TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA--------TPATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SSA +PAA PAT +
Sbjct: 65 RIDEKNFVVVMVTKAKAGQGSSAPPEASPTAAPESSATSPAAPASGMSHPPPATREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQEL 295
AG L+FLR+ PQFQ +R ++Q NP LL +L+
Sbjct: 224 ----------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLRHC 261
>gi|164423937|ref|XP_959055.2| hypothetical protein NCU07542 [Neurospora crassa OR74A]
gi|157070296|gb|EAA29819.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 383
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 141/403 (34%), Positives = 202/403 (50%), Gaps = 39/403 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E++P +T+ VK KI +G + Q LIY GK+LKD+ T+E
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETISKVKQKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E FVV ++ +P ++TAP K +SS+ A A A +
Sbjct: 58 SYKIEEKGFVVCVVN---KP------KTTAP-KPAESSSSAAAPATPAAAAPASTPAPPA 107
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNL---EGAIQQILDMGGGTWDRDT 178
PA + A A+A + A + + A+ N L E + I +M ++R
Sbjct: 108 APAASSAAAAAPSTPTPARTAAAPEAAPAAGARDANALAMGEQRAEAIANMEAMGFERSQ 167
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
+ A+RAA+ NPERAVEYL +GIP + Q +R P AA + A
Sbjct: 168 IDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPAAAPAAAAQAASPAAAGGDD 227
Query: 239 GPNANPLDLFPQ-----------GLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
N DL Q G G+ AAG G+LDFLRN+ QFQ +R +VQ PQ+
Sbjct: 228 DDQVNLFDLAAQLGNSAGGRGARGAEGAGAEAAGLGNLDFLRNNAQFQQMRQLVQEQPQM 287
Query: 288 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEER 347
L+P+LQ+LG NPQL ++I ++ FL NL + I VT EER
Sbjct: 288 LEPILQQLGAGNPQLAQMIAQNSDQFL------------NLLGEGGEGGSVGIAVTEEER 335
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+AIERL +GF + ++ +FAC+K+EELAAN+L D E +D
Sbjct: 336 DAIERLTRLGFPQDQAIQAYFACDKDEELAANFLFDQGPEEDD 378
>gi|365761179|gb|EHN02849.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 397
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 132/434 (30%), Positives = 193/434 (44%), Gaps = 89/434 (20%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+F+ K K+ + +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTIFEAKTKLAQSTSCE---ESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTA------ 114
E + + VV M+++ K T+ T P AP+++ PA P+T TA
Sbjct: 58 SECGLKDGDQVVFMISQKKS----TKTKVTEPPAAPETATTVPAGEPSTEQATASADAPT 113
Query: 115 VPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P + E P P + V SVS V G I++I++MG +
Sbjct: 114 APAAEELQPQEEPNSNTEQVESVST-----------PGFVVGTQRNETIERIMEMG---Y 159
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
R+ V RALRAA+NNP+RAVEYL GIPE R P Q A +PT+ P T
Sbjct: 160 PREEVERALRAAFNNPDRAVEYLLMGIPENL------RPPEQQQQAVAPTEQPPTTA--- 210
Query: 235 VTSSGPNANPLDLFPQGLPDVGS--------------------GAAGAGSLDFLRNSPQF 274
T+ P + DLF Q + G+ G D L
Sbjct: 211 TTAEQPAED--DLFAQAAQGGNTSSGALGSAGGAADAAQGGPPGSIGLTVEDLLS----- 263
Query: 275 QVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ------------ 322
LR +V NP+ L P+L+ + + PQL I + F+ ++ E V
Sbjct: 264 --LRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADD 321
Query: 323 ---------GGEGNLG--DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACN 371
GEG +Q G + TPE+ +AI RL +GF+R +V++V+FAC+
Sbjct: 322 MVEGEDIEVAGEGAAAGPEQAEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACD 381
Query: 372 KNEELAANYLL-DH 384
KNEE AAN L DH
Sbjct: 382 KNEEAAANILFSDH 395
>gi|385306094|gb|EIF50024.1| rad23p [Dekkera bruxellensis AWRI1499]
Length = 421
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 127/441 (28%), Positives = 197/441 (44%), Gaps = 80/441 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K K F +EV+P D++ K K+ Q D P Q +Y GK+LKDD T E
Sbjct: 1 MKVIFKNFKKEKFPIEVEPSDSILSGKEKLSAAQ--DCQPG-QLKFVYSGKILKDDKTFE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
V + ++ M +K ++ + + P P++ A A ++ AV S+
Sbjct: 58 FFNVKDGDQIIFMKSKLRK-------QKSKPEPKPEAQAXXGXAE-XSSENAAVESSSTS 109
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PA + + + S +G S G + A+Q I+ MG ++R+ V R
Sbjct: 110 NXXSXPA----QIXAENQESSTGAXEFTESTFAIGRARQTAVQNIMGMG---FEREQVER 162
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAE--------------------------------VQP 209
AL AA+NNP+RAVEYL +GIPE P
Sbjct: 163 ALTAAFNNPDRAVEYLLNGIPESHHQASAPAPPAPAAEPSAEAAXEKSXGXVDEXQXTAP 222
Query: 210 VARAPGNGQAANS-----PTQMPQPTQPAPVTSSGP----NANPLDLFPQGLPDVGSGAA 260
+ GN +A +S P ++ + + T++ N N +LF + + A
Sbjct: 223 KNASEGNTEAGSSGKSEEPVKIAENVENTNATATTXQTPXNPNSQNLFER----AAAXAQ 278
Query: 261 GAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP 320
G + + + LR ++Q P++ + +LQ++ NPQL +IQ + F+R I
Sbjct: 279 GQNTGENSQEGDYMGSLRELLQQRPEMAEIVLQQMAXSNPQLAEVIQRNPEAFMRYITSG 338
Query: 321 VQG--------------GEGNLGDQLAGLMPQ--SIQVTPEEREAIERLEAMGFDRAIVL 364
Q G G + D G I+VTPEE AI RL +GFDR++V+
Sbjct: 339 DQDALAESLGIPKEYLEGSGXVDDAEDGEEANVPRIEVTPEENAAINRLCELGFDRSLVI 398
Query: 365 EVFFACNKNEELAANYLL-DH 384
+V+FAC+KNEE+AAN L DH
Sbjct: 399 QVYFACDKNEEMAANLLFSDH 419
>gi|195354361|ref|XP_002043666.1| GM26792 [Drosophila sechellia]
gi|194128854|gb|EDW50897.1| GM26792 [Drosophila sechellia]
Length = 414
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 167/326 (51%), Gaps = 33/326 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E PE TV ++K KI +GS+ Y A +Q LIY G +L DD T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGSE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 62 ENKVAENSFVVIMLTK-----NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVP 116
V E F+V+MLT+ N+ + T + S P A + +P
Sbjct: 60 SYNVDEKKFIVVMLTRDSSYSNRNQLSVKESDKLTSTDDSRHSMPCEEANHSNSPSCRNT 119
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
+ + P P+ + ++ ++ + A SNL+ G+ + +++MG + R
Sbjct: 120 DDSVLSRETRPLPSDELIGELA---QASLQSRAESNLLMGDEYNQTVLSMVEMG---YPR 173
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ V RA+ A+YNNPERAVEYL +GIP + G ++ N P+ +P Q A T
Sbjct: 174 EQVERAMAASYNNPERAVEYLINGIP----AEEGTFYNGLNESTN-PSLIPSGPQTASAT 228
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
S+ P D + + +FLR+ PQF +R+++ NP LL +LQ++G
Sbjct: 229 ST---ERPAD-------------SNSDPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIG 272
Query: 297 KQNPQLVRLIQEHQADFLRLINEPVQ 322
+ NP L++LI E+Q FL ++N+P++
Sbjct: 273 QTNPALLQLISENQDAFLNMLNQPIE 298
>gi|90078929|dbj|BAE89144.1| unnamed protein product [Macaca fascicularis]
Length = 217
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 140/230 (60%), Gaps = 31/230 (13%)
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
+ +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA+
Sbjct: 2 VTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS- 54
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
T PQ + A ++ + ++G L+FLRN PQFQ +R ++Q
Sbjct: 55 -TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLRNQPQFQQMRQIIQ 101
Query: 283 ANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----------EGNLGDQL 332
NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ G + +
Sbjct: 102 QNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 161
Query: 333 AGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 162 SGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 210
>gi|195064359|ref|XP_001996553.1| GH23932 [Drosophila grimshawi]
gi|193892099|gb|EDV90965.1| GH23932 [Drosophila grimshawi]
Length = 470
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 173/378 (45%), Gaps = 72/378 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I VK L+ +F ++ PE TV D+K I +G++ Y +Q LIY G +L D+ T+
Sbjct: 1 MIITVKNLQQQTFSIDFDPEKTVLDLKKTIFNERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRST------APTKAPQSSAPTPAATPATAPQTAV 115
KV E F+V+MLT++ TG GS +T A K Q + P A A + A
Sbjct: 60 SYKVDEKKFIVVMLTRDISVTGSGSITNTTDAVASAQRKTQQETTAQPKAAAAESKAEAK 119
Query: 116 PIS--------------------TEP------------TPAPTPAPASASVSSVSATSES 143
P S EP T A +S+ V + +
Sbjct: 120 PTSKSNAVAEGTTKTNKTTNESIVEPASTAAVAGAARATDVDVTASDYSSIDLVGELANA 179
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
+ A SNL+ G + +++MG + RD V RA+ A++NNPERAVEYL +GIP+
Sbjct: 180 SLQTRAESNLLMGEEYNRTVASMIEMG---YARDQVERAMSASFNNPERAVEYLITGIPQ 236
Query: 204 QAEV-------QPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVG 256
+ + + VARA G A + +A+P +
Sbjct: 237 EESLFNAGHDDEDVARA---GSLLQQQVGGGGDGGSASDLQTDSSADPFE---------- 283
Query: 257 SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRL 316
FLR+ PQF +R+++ NP LL +LQ++G+ NP L++LI E+Q FL +
Sbjct: 284 ----------FLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNM 333
Query: 317 INEPVQGGEGNLGDQLAG 334
+N+P++G G Q G
Sbjct: 334 LNQPLEGEVGGDNSQRLG 351
>gi|358398611|gb|EHK47962.1| hypothetical protein TRIATDRAFT_298203 [Trichoderma atroviride IMI
206040]
Length = 367
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 144/393 (36%), Positives = 195/393 (49%), Gaps = 45/393 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++V+P D + VK KI +G + Q LIY GK+LKDD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDQISAVKEKIAAEKG---WEPKTQKLIYSGKILKDDDTVQ 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E FVV M+ K + + AP P P+ A P QT+
Sbjct: 58 SYNIEEKGFVVCMVNKPRPAAAAAPAAAAAPPATPAQRVPSTPAVPPAPSQTSSQAPP-- 115
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ + S S SG S L G AI + MG ++R +
Sbjct: 116 --------PATPTPNRSVESPSG----GVSGLAMGAERAEAIANMEAMG---FERTQIEA 160
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+NNP+RAVEYL +GIPE + + RA AA +PT P V
Sbjct: 161 AMRAAFNNPDRAVEYLLTGIPENIQQEQQQRASQQQAAAAAPTAAPAADDDGGV------ 214
Query: 242 ANPLDLFPQ--------GLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQ 293
N DL Q G+G G+LDFLR++ QFQ LR +VQ PQ+L+P+LQ
Sbjct: 215 -NLFDLAAQRRGGGASDAPAAAGAGQGDLGNLDFLRHNAQFQQLRQVVQQQPQMLEPILQ 273
Query: 294 ELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEEREAIE 351
+LG NPQL +LI + FL+L+ E D L P Q+I VT EER+AIE
Sbjct: 274 QLGAGNPQLAQLIASNPDQFLQLLGED--------ADDDVPLPPGAQAISVTEEERDAIE 325
Query: 352 RLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
RL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 326 RLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 358
>gi|260945185|ref|XP_002616890.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
gi|238848744|gb|EEQ38208.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 191/381 (50%), Gaps = 44/381 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ K LK + V V+P D V K K+ + DV P+ Q +Y GKVL+DD T +
Sbjct: 1 MQVTFKDLKKQTVQVSVEPSDLVRVGKEKVAAAR--DVDPS-QLKFVYSGKVLQDDKTFD 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E KV E ++ M+++ K+ AP + SAP+ T P+TA S+
Sbjct: 58 EFKVKEGDSIIFMISQ-KKSPAPAPAPVAAPAASEAVSAPSEPETSTQTPETA---SSTA 113
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A TPA ++S+ +G + E AIQ +++MG ++R + R
Sbjct: 114 ANASTPA--------------------SSSDFASGQDREAAIQNMMEMG---YERPQIER 150
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAA+NNP RAVEYL +GIPE + RA QA P + Q S
Sbjct: 151 ALRAAFNNPHRAVEYLITGIPE-----ALTRAEQPPQAQEEPAAHAE-AQTEHEDESNQE 204
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
AN + + DV AAG + + + +LRA +Q+ P+L+Q +LQE+ NPQ
Sbjct: 205 AN----VHENMFDVAEAAAGDEPVPAQED--RLALLRAAIQSEPELVQSVLQEIAASNPQ 258
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRA 361
+LI++ F+ + + ++ G++ +Q++ + AI RL +GFDR
Sbjct: 259 AAQLIEQDPEAFISTLLGQHDDAGYEIEEEEEGVV--RVQLSESDESAIRRLCELGFDRD 316
Query: 362 IVLEVFFACNKNEELAANYLL 382
+V++V+ AC++NEE+AA+ L
Sbjct: 317 MVVQVYLACDRNEEVAADILF 337
>gi|449017046|dbj|BAM80448.1| nucleotide excision repair protein yeast rad23/ human HHR23A
homolog [Cyanidioschyzon merolae strain 10D]
Length = 430
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 129/437 (29%), Positives = 215/437 (49%), Gaps = 75/437 (17%)
Query: 2 MKIFVKTLKGTSFDVE-VKPEDTVFDVKMKIETVQGSDVYPAAQQ--MLIYQGKVLKDDT 58
M++ KTL + ++ + P+ TV ++K ++ + PA Q LI+ G+VL D T
Sbjct: 1 MRLTFKTLDNKNLSLDGISPDTTVEELKRELGGREEFRWDPARTQEARLIFAGRVLSDPT 60
Query: 59 -TLEENKVAENSFVVIM----LTKNKRPTGEGSTRST---APTKAPQSSAPTPAATPATA 110
L + + ++ F+V+M T+ R T S+ P +A +S T +AT A+
Sbjct: 61 QKLADCGMQDDDFLVVMPPRVATQRSRKTASVSSADAQLKTPLQAGLASEATDSATIASE 120
Query: 111 PQTAVPISTEP------TPAPTPAPASASVSS--VSATSESGVYGHAASNLVAGNNLEGA 162
+P + P + TPA + A + V T+ SG+ A+S L G+
Sbjct: 121 ASRGIPADSPPASVSAKSSGATPAESGALSQTPQVEGTTTSGI---ASSGLAVGDEYSLY 177
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPV---ARAPGNG 217
+ ++ DMG +D ++ RA+RAA+ NPERA+EYL +G P E +P+ AR P +
Sbjct: 178 MNRMRDMG---FDDGSIERAMRAAHYNPERAIEYLCNGFPANTESLTEPLNDEARRPEH- 233
Query: 218 QAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVL 277
Q + M Q ++PA P++ + LD +R P F +L
Sbjct: 234 QTLPAQAGMDQTSRPAEAVH---------------PELQQSRS---ELDIIRRLPHFALL 275
Query: 278 RAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV---------------- 321
R +Q +P +Q +L EL + NP+L+ +IQ +QADF+ ++NEPV
Sbjct: 276 RRAIQQDPSQIQSLLAELRRMNPRLLDIIQRNQADFINMLNEPVTDEEAGREMRQLRELV 335
Query: 322 -QGGEGNL--GDQLAGLMPQS---IQVTPEEREAIERLEA----MGFDRAIVLEVFFACN 371
Q G GN+ G + P + I+V+ EE E + +LE MG R L+V+ +C+
Sbjct: 336 AQQGRGNMYAGADAPSMEPTNAIRIEVSQEEAEQLRQLEQMMEPMGVSRDTCLQVWLSCD 395
Query: 372 KNEELAANYLLDHMHEF 388
+N ELAA +L+D++ ++
Sbjct: 396 RNTELAAMHLMDNLEDY 412
>gi|428184303|gb|EKX53158.1| hypothetical protein GUITHDRAFT_64501 [Guillardia theta CCMP2712]
Length = 346
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 129/404 (31%), Positives = 188/404 (46%), Gaps = 93/404 (23%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDV-----YPAAQQM-LIYQGKVLK 55
MK+ VK++ G +F+VE+ TVFD+K I V+ DV +++ M +I QGK+L
Sbjct: 1 MKVKVKSIAGDNFEVEIGGSSTVFDLKKAISEVKRYDVTDEMLRDSSKGMKIILQGKILD 60
Query: 56 DDTTLEEN--KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQT 113
D T+ K+ SF V+M EG T PQ PA T
Sbjct: 61 DSQTISSLGPKI---SFFVMM-------PPEGVTLKKVEVSKPQDQ---PAVTS------ 101
Query: 114 AVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
G + ++ G +LE ++++I MG
Sbjct: 102 ---------------------------------GLQNNTILMGEDLEASVREICGMG--- 125
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPA 233
+ V RALR A+NNP+RAVE LY+G + A Q + Q P+ A
Sbjct: 126 FAESEVRRALRLAFNNPDRAVEILYNGASDDA--QQMQNEQPAEQQQQQQGASPE----A 179
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQ 293
P S P +D + G AG L+ LR PQF +R VQ+ P LL +L
Sbjct: 180 PSHGSMPLRFNMDALAVNASEAG---AGGNQLEMLRRDPQFAFVRHCVQSQPSLLPELLL 236
Query: 294 ELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQ-----SIQVTPEERE 348
++G+ NP L+ I ++QA+F+R++NEP G N PQ +IQ+T EE +
Sbjct: 237 QIGRVNPSLLATINQNQAEFVRIVNEP---GMQN---------PQEPSQHTIQLTREELD 284
Query: 349 AIERLEA----MGFDRAIVLEVFFACNKNEELAANYLLDHMHEF 388
+ERLE MG DR VLE + AC+K+E+LAANYLL+++ +
Sbjct: 285 QVERLEQLVVPMGLDRQAVLEAWLACDKDEQLAANYLLNNLEDI 328
>gi|401840717|gb|EJT43420.1| RAD23-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 397
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 131/434 (30%), Positives = 193/434 (44%), Gaps = 89/434 (20%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+F+ K K+ + +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTIFEAKTKLAQSTSCE---ESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTA------ 114
E + + VV M+++ K T+ T P AP+++ PA P+T TA
Sbjct: 58 SECGLKDGDQVVFMISQKKS----TKTKVTEPPAAPETATTVPAGEPSTEQATASADAPT 113
Query: 115 VPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P + E P P+ + SVS V G I++I++MG +
Sbjct: 114 APAAEELQPQEEPSSNTEQAESVST-----------PGFVVGTQRNETIERIMEMG---Y 159
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
R+ V RALRAA+NNP+RAVEYL GIPE R P Q A +PT+ P T
Sbjct: 160 PREEVERALRAAFNNPDRAVEYLLMGIPENL------RPPEPQQQAVAPTEQPPTTA--- 210
Query: 235 VTSSGPNANPLDLFPQGLPDVGS--------------------GAAGAGSLDFLRNSPQF 274
T+ P + DLF Q + G+ G D L
Sbjct: 211 TTAEQPAED--DLFAQAAQGGNTSSGALGSAGGAADAAQGGPPGSIGLTVEDLLS----- 263
Query: 275 QVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ------------ 322
LR +V NP+ L P+L+ + + PQL I + F+ ++ E V
Sbjct: 264 --LRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADD 321
Query: 323 ---------GGEGNLG--DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACN 371
GEG +Q G + TPE+ +AI RL +GF+R +V++V+FAC+
Sbjct: 322 MVEGEDIEVAGEGAAAGPEQAEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACD 381
Query: 372 KNEELAANYLL-DH 384
KNEE AAN L DH
Sbjct: 382 KNEEAAANILFSDH 395
>gi|24638591|ref|NP_651918.2| Rad23, isoform A [Drosophila melanogaster]
gi|442614351|ref|NP_001259052.1| Rad23, isoform C [Drosophila melanogaster]
gi|4928456|gb|AAD33594.1|AF132147_1 DNA repair protein Rad23 [Drosophila melanogaster]
gi|7304320|gb|AAF59352.1| Rad23, isoform A [Drosophila melanogaster]
gi|220942642|gb|ACL83864.1| Rad23-PA [synthetic construct]
gi|440218136|gb|AGB96542.1| Rad23, isoform C [Drosophila melanogaster]
Length = 414
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 163/325 (50%), Gaps = 33/325 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E PE TV ++K KI +G + Y A +Q LIY G +L DD T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 62 ENKVAENSFVVIMLTK-----NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVP 116
V E F+V+MLT+ N+ + T + S P A +P +
Sbjct: 60 SYNVDEKKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSST-- 117
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
+TE + +S + +++ + A SNL+ G+ + +++MG + R
Sbjct: 118 -NTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMG---YPR 173
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ V RA+ A+YNNPERAVEYL +GIP + + +P+ +P QPA T
Sbjct: 174 EQVERAMAASYNNPERAVEYLINGIPAEE-----GTFYNRLNESTNPSLIPSGPQPASAT 228
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
S+ S + + +FLR+ PQF +R+++ NP LL +LQ++G
Sbjct: 229 SAE----------------RSTESNSDPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIG 272
Query: 297 KQNPQLVRLIQEHQADFLRLINEPV 321
+ NP L++LI E+Q FL ++N+P+
Sbjct: 273 QTNPALLQLISENQDAFLNMLNQPI 297
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 37/44 (84%)
Query: 339 SIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+I++ ++++AIERL+A+GF A+VL+ +FAC KNEE AAN+LL
Sbjct: 365 TIRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFLL 408
>gi|401626135|gb|EJS44097.1| rad23p [Saccharomyces arboricola H-6]
Length = 401
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 140/435 (32%), Positives = 202/435 (46%), Gaps = 87/435 (20%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+F+ K K+ + +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTIFEAKTKLAQTASCE---ESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPT-PAATPATAPQTAVPIST 119
E + + VV M+++ KR T T+ T P AP+++A T P +T P + ST
Sbjct: 58 SECGLKDGDQVVFMISQ-KRST---KTKVTEPPIAPETAATTNPVRDDSTEPAS---TST 110
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAAS-NLVAGNNLEGAIQQILDMGGGTWDRDT 178
+ A T A S TS + G A++ V G I++I++MG + R+
Sbjct: 111 DAPTAETSTAAEGSQPQEEQTSTTEPAGSASTPGFVVGTQRNETIERIMEMG---YPREE 167
Query: 179 VVRALRAAYNNPERAVEYLYSGIPE---QAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
V RALRAA+NNP+RAVEYL GIPE Q + Q A A N Q A + T QP +
Sbjct: 168 VERALRAAFNNPDRAVEYLLMGIPENLRQPDPQQQAVA-ANEQPATAATTTEQPAED--- 223
Query: 236 TSSGPNANPLDLFPQG----------LPDVGSGAAGA-----GSLDFLRNSPQFQVLRAM 280
DLF Q L VGS A A GS+ LR +
Sbjct: 224 ----------DLFAQAAQGGNTSSGALGSVGSAADAAQGGPPGSIGLTVED--LLSLRQV 271
Query: 281 VQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--- 337
V NP+ L P+L+ + + PQL I + F+ ++ E V GD + +M
Sbjct: 272 VSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAV-------GDNMQDVMEGAD 324
Query: 338 -------------------------QSIQV--TPEEREAIERLEAMGFDRAIVLEVFFAC 370
S QV TPE+ +AI RL +GF+R +V++V+FAC
Sbjct: 325 EMVEGEEVEVAGESSTAGPGQSEGESSFQVDYTPEDDQAISRLCELGFERDLVIQVYFAC 384
Query: 371 NKNEELAANYLL-DH 384
+KNEE AAN L DH
Sbjct: 385 DKNEEAAANILFSDH 399
>gi|4928709|gb|AAD33695.1|AF136606_1 DHR23 [Drosophila melanogaster]
Length = 414
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 163/325 (50%), Gaps = 33/325 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +K L+ +F +E PE TV ++K KI +G + Y A +Q LIY G +L DD T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 62 ENKVAENSFVVIMLTK-----NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVP 116
V E F+V+MLT+ N+ + T + S P A +P +
Sbjct: 60 SYNVDEKKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSST-- 117
Query: 117 ISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
+TE + +S + +++ + A SNL+ G+ + +++MG + R
Sbjct: 118 -NTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMG---YPR 173
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ V RA+ A+YNNPERAVEYL +GIP + + +P+ +P QPA T
Sbjct: 174 EQVERAMAASYNNPERAVEYLINGIPAEE-----GTFYNRLNESTNPSLIPSGPQPASAT 228
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
S+ S + + +FLR+ PQF +R+++ NP LL +LQ++G
Sbjct: 229 SAE----------------RSTESNSDPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIG 272
Query: 297 KQNPQLVRLIQEHQADFLRLINEPV 321
+ NP L++LI E+Q FL ++N+P+
Sbjct: 273 QTNPALLQLISENQDAFLNMLNQPI 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 40/52 (76%), Gaps = 2/52 (3%)
Query: 339 SIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+I++ ++++AIERL+A+GF A+VL+ +FAC KNEE AAN+LL FED
Sbjct: 365 TIRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFLLS--SSFED 414
>gi|344244513|gb|EGW00617.1| UV excision repair protein RAD23-like A [Cricetulus griseus]
Length = 316
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 129/355 (36%), Positives = 178/355 (50%), Gaps = 103/355 (29%)
Query: 94 KAPQSSAPTPAATPATAPQTAVPISTEPTPAPT-----PAPAS---ASVSSVSATSES-- 143
KA QS+ P +P AP+++ P PAPT P PAS S S SAT+ S
Sbjct: 6 KAGQSTPAPPEVSPTAAPESSTPF----PPAPTSGMSHPPPASREDKSPSEESATATSPE 61
Query: 144 ------------GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPE 191
G AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP
Sbjct: 62 SISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPH 118
Query: 192 RAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQG 251
RAVEYL +GIP E P +G S Q+P+ QPA
Sbjct: 119 RAVEYLLTGIPGSPE-------PEHGSVQES--QVPE--QPA------------------ 149
Query: 252 LPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQA 311
AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ
Sbjct: 150 -----VEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQE 204
Query: 312 DFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIER---------- 352
F++++NEP V+G G +G++ + IQVTP+E+EAIER
Sbjct: 205 QFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERVRSLAKEPLM 262
Query: 353 -----------------LEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
L+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 263 VGSPMLPSFLPLPIFPQLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 315
>gi|367027912|ref|XP_003663240.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
gi|347010509|gb|AEO57995.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
Length = 377
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 137/403 (33%), Positives = 200/403 (49%), Gaps = 55/403 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P D + VK +I +G D Q LIY GK+LKD+ T+E
Sbjct: 1 MKVTFKDLKQQKFVLDVEPTDLISAVKQRISEERGWD---PKHQKLIYSGKILKDEDTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E FVV ++ K K P + S++ + + A A +
Sbjct: 58 SYKIEEKGFVVCVVNKPKEPKPAPAAESSSSAAPATPAPAQSSTPAAPAAPVQASSTATA 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PA SA+ ++++ G + +A N+E MG ++R +
Sbjct: 118 APATPTPNRSAAPATLATDPNQLAMGEQRAEAIA--NMEA-------MG---FERSQIDA 165
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP- 240
A+RAA+ NP+RAVEYL +GIPE + Q+A++P Q Q + +
Sbjct: 166 AMRAAFFNPDRAVEYLLNGIPEHLQ-----------QSASAPRQAAQTAAASSAGADDDS 214
Query: 241 NANPLDLFPQGLPDVGSGAAGA-----------------GSLDFLRNSPQFQVLRAMVQA 283
N N DL Q GSGA G+L++LR + QFQ LR +VQ
Sbjct: 215 NVNLFDLAAQA--GRGSGARSGSGADVGTGAAAAAGQDLGNLEWLRANAQFQQLRQVVQQ 272
Query: 284 NPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQ 341
PQ+L+P+LQ+LG NPQL +LI ++ FL L++E + GD A L P I
Sbjct: 273 QPQMLEPILQQLGASNPQLAQLIAQNPDQFLSLLSE-------SGGDDDAPLPPGAHQIS 325
Query: 342 VTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
VT EER+AIERL +GF + ++ +FAC+KNEELAAN+L D
Sbjct: 326 VTEEERDAIERLTRLGFTQDQAIQAYFACDKNEELAANFLFDQ 368
>gi|425766442|gb|EKV05052.1| UV excision repair protein (RadW), putative [Penicillium digitatum
PHI26]
gi|425781661|gb|EKV19612.1| UV excision repair protein (RadW), putative [Penicillium digitatum
Pd1]
Length = 377
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 137/407 (33%), Positives = 200/407 (49%), Gaps = 50/407 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P +TV +VK+KI +G Y A + +IY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQEKFVIDVEPSETVREVKVKIAQEKGE--YDAERMKVIYSGKILQDDKTVE 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V + +K+P ST P S P A +T P +
Sbjct: 59 SYNIQEKDFLVCL--PSKQPKAASSTAPQVP------STPAARAPVSTPAPPPAPHAAAA 110
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + + S +G S L G+ EGA Q+ MG D D R
Sbjct: 111 APLFAAPATPSPAGAAPPPSSGPAFGDP-SALTMGSAAEGAAAQMEAMGFARTDID---R 166
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RA+EYL +GIP+ + + A+ P T AP SG +
Sbjct: 167 AMRAAFYNPDRAIEYLLTGIPDN-----IQEQQQQQRQASEPAS----TGAAPAAPSGGD 217
Query: 242 ANPLDLFPQGLPDVGSGAAGAG----------------SLDFLRNSPQFQVLRAMVQANP 285
+LF G G + SL+FLR++P FQ LR +VQ P
Sbjct: 218 EPHFNLFEAAAQAGGEGGGRSRGVAGAGAGTAGGEALGSLEFLRSNPHFQQLRQLVQQQP 277
Query: 286 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP---QSIQV 342
+L+P+LQ++ NPQ+ +I ++ FL+L+ E ++ G +P Q+I V
Sbjct: 278 HMLEPILQQVAAGNPQIASIIGQNSDQFLQLLGEELE--------DEEGALPPGAQAISV 329
Query: 343 TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 389
T EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E E
Sbjct: 330 TEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFDQPEEDE 376
>gi|413954954|gb|AFW87603.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 104
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG-EGNLGDQLAGLMPQSIQVTPEEREA 349
MLQELGKQNPQ++RLIQE+QA+FLRL+NE +GG GN+ QLA +PQ++ VTPEEREA
Sbjct: 1 MLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAVPQTLTVTPEEREA 60
Query: 350 IERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
I+RLE MGF+R +VLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 61 IQRLEGMGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 101
>gi|297276258|ref|XP_001110103.2| PREDICTED: UV excision repair protein RAD23 homolog A [Macaca
mulatta]
Length = 276
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 165/306 (53%), Gaps = 43/306 (14%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPA--TAPQTAVPISTEP 121
++ E +FVV+M+TK K G + +PT AP+SS P A + + PQ A P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPQPAAREDKSP 124
Query: 122 T--PAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ APT +P S S S S+ S AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGR-EEDAASTLVTGSEYETMLTEIMSMG---YERERV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 181 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA------ 223
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
AG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++N
Sbjct: 224 ------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQEN 265
Query: 300 PQLVRL 305
PQL+++
Sbjct: 266 PQLLQV 271
>gi|167999117|ref|XP_001752264.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696659|gb|EDQ82997.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/114 (69%), Positives = 93/114 (81%), Gaps = 4/114 (3%)
Query: 280 MVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN---LGDQLAGLM 336
MVQANPQ+LQPMLQELGKQNP L+RLI E+QA+FLRLINE G LG QLAG
Sbjct: 1 MVQANPQILQPMLQELGKQNPALLRLINENQAEFLRLINEAGAEGAEGGDALG-QLAGGY 59
Query: 337 PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
PQS+ VTPEEREAIERLE MGF RA+V+E F AC+KNE+LAANYLL++ +E++D
Sbjct: 60 PQSVNVTPEEREAIERLEGMGFSRALVIEAFLACDKNEQLAANYLLENANEYDD 113
>gi|26337167|dbj|BAC32268.1| unnamed protein product [Mus musculus]
Length = 296
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 168/327 (51%), Gaps = 59/327 (18%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 118
Query: 124 APTPAPASASVSSVSATSESGVYG---------HAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S S SG AAS LV G+ E + +I+ MG +
Sbjct: 119 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QPA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQPA- 223
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
AG L+FLR+ PQFQ +R ++Q NP LL +LQ+
Sbjct: 224 -----------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQ 260
Query: 295 LGKQNPQL------VRLIQEHQADFLR 315
LG++NPQL VR +++ + FLR
Sbjct: 261 LGQENPQLLQVRPRVRELRQPPSQFLR 287
>gi|363746935|ref|XP_003643857.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Gallus
gallus]
Length = 214
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 144/248 (58%), Gaps = 56/248 (22%)
Query: 154 VAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP--EQAEVQPVA 211
V G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +GIP +AE PV
Sbjct: 11 VTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEAERPPV- 66
Query: 212 RAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNS 271
Q + +P Q P P NPL+ FLR
Sbjct: 67 ------QESRAPEQ--------PQVEGQPGENPLE--------------------FLREQ 92
Query: 272 PQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQ 331
PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I +HQ F++++NEP+ G LGD
Sbjct: 93 PQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISQHQEQFIQMLNEPL----GELGD- 147
Query: 332 LAGLM-------PQ--SIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
L G M PQ IQVTP+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL
Sbjct: 148 LEGEMGAIGDESPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLL 207
Query: 383 DHMHEFED 390
F+D
Sbjct: 208 S--QNFDD 213
>gi|399218138|emb|CCF75025.1| unnamed protein product [Babesia microti strain RI]
Length = 334
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 192/411 (46%), Gaps = 107/411 (26%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVY--PAAQQMLIYQGKVLKDDTT 59
MK+ TLK VEV P DTV + KI GS + A++ LI+ GK+LK +
Sbjct: 1 MKLIACTLKNVETCVEVDPSDTVDALTNKI----GSSLNNASASKMRLIHAGKILKMEQK 56
Query: 60 LEE-NKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
+ + + + + ++++ +K E ST + PT AP S TP A T+P
Sbjct: 57 ISDYSDIKDGDKIIVLFSKQ----SEASTIAN-PTPAPTS---TPIADANTSP------- 101
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
P P PT P + L+ G LE AI I++MG +D ++
Sbjct: 102 --PKPIPTTDPNA---------------------LLMGEELEKAINGIVEMG---FDVES 135
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V A+ AA+NNP RA+E L + EV ++ T T + T
Sbjct: 136 VKAAMSAAFNNPNRAIELL-----TRHEVD----------VSDHDTHQSVQTTVSISTIC 180
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
N +G LD LR P F+ +RA+V++NPQ L +L +G+
Sbjct: 181 YKNHEL-----------------SGVLDELRQHPMFEQMRAIVRSNPQTLPQILSLIGQS 223
Query: 299 NPQLVRL---------------IQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVT 343
+P L+++ I E+Q +F++L++EPV G G+ D QSI +T
Sbjct: 224 DPSLLQVSLTIITYLIYYPYIAITENQEEFIQLLSEPVLGTSGDFID------AQSITLT 277
Query: 344 PEEREAIER------LEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEF 388
PEE E+I R LE +GF R +E F AC+KNEE+AANYLL+++ ++
Sbjct: 278 PEEMESINRVSDTIYLEGLGFSRPAAVEAFLACDKNEEMAANYLLENIADY 328
>gi|50309879|ref|XP_454953.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644088|emb|CAH00040.1| KLLA0E22133p [Kluyveromyces lactis]
Length = 383
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 196/411 (47%), Gaps = 59/411 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I K K +E+ + T+ K I + D A+Q LIY GK+L+D T+
Sbjct: 1 MLINFKDFKKEKLPIELADDATISHAKELIAEQKQCD---ASQIKLIYAGKILQDPKTVS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E V+ M++K K+ + + T T PQ + A+ +A A
Sbjct: 58 GCNLKEGDQVIFMISKTKK---KADVKVTESTTEPQDESQATASAETSAVANA------- 107
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PA A+ + + T+ + G ++ V G+ + +I++MG +DR+ V R
Sbjct: 108 -----PAEATTTGTRTGTTAVTQEEGTTDASFVTGSQRNETVNRIMEMG---YDREQVER 159
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAE-VQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAA+NNP+RAVEYL GIPE +E Q A A + AN+ +++ P+ T
Sbjct: 160 ALRAAFNNPDRAVEYLLMGIPEASEPSQQQAEAVTSEAGANANSEVATDV-PSQFTEHED 218
Query: 241 NANPLDLFPQGLPDVGS----GAAGAGSLDF------LRNSPQFQVLRAMVQANPQLLQP 290
N LF Q + G AAG G + + + Q LR +V P+ L P
Sbjct: 219 N-----LFAQAEANNGEQGHESAAGLGGEEMGTIGLTMEDITQ---LRDVVSGRPEALMP 270
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQG--------------GEGNLGD---QLA 333
+ + L + P L + + F+ L+ E V G EG+LGD Q
Sbjct: 271 LFESLSTRYPHLRETMLQDPQRFISLLLEAVGGSLTDSLGENLGDDIAEGDLGDFGGQTQ 330
Query: 334 GLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
G P ++ ++ E+ EAI RL +GF+R +V++++FAC+KNEE+AAN L ++
Sbjct: 331 G-APPNVTISAEDEEAINRLCELGFERTLVVQIYFACDKNEEIAANMLFNN 380
>gi|403216612|emb|CCK71108.1| hypothetical protein KNAG_0G00510 [Kazachstania naganishii CBS
8797]
Length = 375
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 189/416 (45%), Gaps = 81/416 (19%)
Query: 1 MMKIFVKTLKGT--SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDT 58
M+++ K K + DV+++ E +V DVK K+ + D A Q LI+ GKVL+D
Sbjct: 1 MVQVVFKDFKKNKETLDVDLEHE-SVKDVKEKLAAARDCD---AEQIKLIFSGKVLQDAK 56
Query: 59 TLEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
E + EN V++M++K K PA P P+T
Sbjct: 57 PFAETGLKENDHVIMMVSKKKS---------------------VPAKEPVKEPET----- 90
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
EP A+ + + + S V ++ + V G +++I++MG ++R
Sbjct: 91 -EPVATTETPAATTTEPAPAGAG-SVVADNSTPDFVTGQQRNETVERIMEMG---YERAQ 145
Query: 179 VVRALRAAYNNPERAVEYLYSGIPE-QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V RALRAA+NNP+RAVEYL +GIP Q QP + P Q++ SP P QP
Sbjct: 146 VERALRAAFNNPDRAVEYLITGIPAAQPAEQPAEQTPEQAQSSASPEHSEPPEQP----- 200
Query: 238 SGPNANPLDLFPQGLPDVG--SGAAGA------------GSLDFLRNSPQFQVLRAMVQA 283
+ DLF Q L + G +GA G GS+ LR +V
Sbjct: 201 -----HEDDLFAQALGNNGQSAGAEGTPGTPGTASAAPPGSIGLTVED--LMALREVVSG 253
Query: 284 NPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLI-----------------NEPVQGGEG 326
NP+ L P+L+ L + PQL I + F+ ++ +E Q GE
Sbjct: 254 NPEALAPLLENLSNRYPQLREQIMANPEVFVSMLLEVVGENLTHMDEFTAESEAAQSGEA 313
Query: 327 NLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+ Q +Q++ + +A+ERL +GF+R +V++V+FAC KNEE+ AN L
Sbjct: 314 PGAGGPSSESAQIVQLSEHDEQAVERLCELGFERTLVIQVYFACEKNEEITANMLF 369
>gi|84998362|ref|XP_953902.1| DNA repair protein (RAD23 ) [Theileria annulata]
gi|65304900|emb|CAI73225.1| DNA repair protein (RAD23 homologue), putative [Theileria annulata]
Length = 328
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 127/394 (32%), Positives = 197/394 (50%), Gaps = 71/394 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQ---MLIYQGKVLKDDT 58
M + VKTLK DV+V +V D+ K+ ++ +P Q LI+ GK+LK +
Sbjct: 1 MNLKVKTLKNVQVDVDVPDTASVEDLMNKV-----AESFPNMQADSLKLIHAGKILKKEL 55
Query: 59 TLEE-NKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPI 117
L++ + + + V+++ +K P+ ++ P P SS TP + P PQ
Sbjct: 56 LLKDYSDIKDGDKVIVISSKTSDPS-----KNQDPNSQP-SSTTTPTSKP---PQP---- 102
Query: 118 STEPTPAPTP-APASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
PT TP P+S +V S Y + +S V G+ LE +I +I +MG ++R
Sbjct: 103 ---PTQDDTPNQPSSGNVVS------EQTYENVSSKFVMGSELEQSINRICEMG---FER 150
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
V RA+ AA+NNP+RAVE+L +G N A+N P
Sbjct: 151 PLVERAMAAAFNNPDRAVEFLSTG---------------NIPASNMP------------- 182
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
NA L G P AG L L++ P F+ L V+++P LLQ ML+ LG
Sbjct: 183 --NINAQNLATAEHGDP------AGDDVLQMLQSHPMFEQLIQAVRSDPNLLQQMLENLG 234
Query: 297 KQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM 356
+ NP+L++ I + Q +F+ L++ + P I +TP E E+I+RLE +
Sbjct: 235 QTNPELLQAIIQRQDEFVELLSSSARAAATADQYSTTENNPNIITLTPVEMESIQRLEGL 294
Query: 357 GFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
GF R V+E + AC+KNEELAANYLL++ ++F++
Sbjct: 295 GFSRPAVIEAYLACDKNEELAANYLLENFNDFQE 328
>gi|150864814|ref|XP_001383791.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
gi|149386070|gb|ABN65762.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
Length = 366
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 125/403 (31%), Positives = 189/403 (46%), Gaps = 56/403 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ K K +EV+ DTV K K+ + + A Q +Y GKVL D+ TLE
Sbjct: 1 MQVIFKDFKKQKVPLEVELTDTVLATKEKLAAEKDCE---APQLKFVYSGKVLSDEKTLE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K+ E ++ M+ S A A S +
Sbjct: 58 EFKIKEGDSIIFMI----------------------SKAKKTPTPAPAAAPITTTSSEQS 95
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ P A+ + + A ES +S G+ E +IQ I++MG + R V
Sbjct: 96 SATPGSTTATTTTGNAEAAPESSTTSEPSSTFAQGSEREASIQNIMEMG---YQRAEVEN 152
Query: 182 ALRAAYNNPERAVEYLYSGIPE---QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
ALRAA+NNP RAVEYL +GIP+ + EV P A AP A ++ ++ Q
Sbjct: 153 ALRAAFNNPHRAVEYLLTGIPQSLQRPEV-PAAVAP---VADSTHEELAQDHDIDDGEEQ 208
Query: 239 GPNANPLDLFPQGLPDV----GSGA----AGAGSLDFLRNSPQFQVLRAMVQANPQLLQP 290
G N LF G+GA A G L + + Q +LRA +Q+NP+L+QP
Sbjct: 209 GEN-----LFEAAAAAQARSQGAGAVEQPATGGGLAEMGDDEQMNLLRASLQSNPELIQP 263
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRL--------INEPVQGGEGNLGDQLAGLMPQSIQV 342
+L++L NP++ LIQ+ F+R + ++G +G G G P I +
Sbjct: 264 ILEQLASSNPRIATLIQQDPEAFIRTFLGAGADELGYEIEGDDGAEGADATGQQPIRIPL 323
Query: 343 TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
T +++ AIERL +GF+R +V++V+ AC+KNEE+AA+ L M
Sbjct: 324 TEQDQNAIERLCELGFERDLVIQVYLACDKNEEVAADILFRDM 366
>gi|242079575|ref|XP_002444556.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
gi|241940906|gb|EES14051.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
Length = 184
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 77/118 (65%), Positives = 86/118 (72%), Gaps = 9/118 (7%)
Query: 140 TSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
+ ++ VY AASNLV+GNNLE IQQILDMGGGTW+RDTVVRALRAAYNNPERA++YLYS
Sbjct: 69 SGDADVYSQAASNLVSGNNLEQIIQQILDMGGGTWERDTVVRALRAAYNNPERAIDYLYS 128
Query: 200 GIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPA---PV----TSSGPNANPLDLFPQ 250
GIP E PVA AP GQ N Q P P QPA PV S+ P+ANPL LFPQ
Sbjct: 129 GIPVNVETPPVAGAPAGGQQTNQ--QAPSPAQPAVASPVQPSAASARPDANPLILFPQ 184
>gi|255943815|ref|XP_002562675.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587410|emb|CAP85444.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 380
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 138/406 (33%), Positives = 198/406 (48%), Gaps = 45/406 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P +TV +VK+KI +G Y A + +IY GK+L+DD T+E
Sbjct: 1 MKLTFKDLKQEKFVIDVEPSETVREVKVKIAQEKGE--YEAERMKVIYSGKILQDDKTVE 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V + +K + STA ++ P S P A +T P +
Sbjct: 59 SYNIQEKDFLVCLPSKQPKAAA-----STASSQVP--STPAARAPVSTPAAPPAPHAAAA 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + + A S +G S L G EGA+ Q+ MG D D R
Sbjct: 112 PPPSVAPATPSPAGAAPAPSSGPAFGDP-SALTMGPAAEGAVVQMEAMGFARTDID---R 167
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RA+EYL +GIP+ + Q + S T AP SG +
Sbjct: 168 AMRAAFYNPDRAIEYLLTGIPDNIQEQQQQQQQA------SETAPTGAAPAAPAAPSGGD 221
Query: 242 ANPLDLFPQGLPDVGSGAAGAG---------------SLDFLRNSPQFQVLRAMVQANPQ 286
L+LF G G G SL+FLR++P FQ LR +VQ P
Sbjct: 222 EPHLNLFEAAAQAGGEGGRPRGAAGAGAGAAGGEALGSLEFLRSNPHFQQLRQLVQQQPH 281
Query: 287 LLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP---QSIQVT 343
+L+P+LQ++ NPQ+ +I ++ F G + G +P Q+I VT
Sbjct: 282 MLEPILQQVAAGNPQIASIIGQNSDQF--------LQLLGEELEDEEGALPPGAQAISVT 333
Query: 344 PEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 389
EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E E
Sbjct: 334 EEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFDQPDEDE 379
>gi|410079523|ref|XP_003957342.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
gi|372463928|emb|CCF58207.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
Length = 379
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 190/400 (47%), Gaps = 42/400 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I K K VE++ T+ D K K+ +++ D+ Q LI+ GKVLKDD T+
Sbjct: 1 MNIIFKDFKKEKIPVELESSSTILDAKNKLASIKSCDI---DQIKLIFSGKVLKDDQTVS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ +N V++M++K K + +T T+ PQ S P P+ +
Sbjct: 58 SCGLKDNDQVIMMISKKK-----ATPSATKVTEPPQQSEEQPVQEPSQEQE--------- 103
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P+ A + + +A + + V G+ +++I++MG ++RD V R
Sbjct: 104 ---PSGTTAEPAPIAPAAPVAAEPESTSTPGFVTGSERNETVERIMEMG---YERDQVER 157
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPA---PVTSS 238
ALRAA+NNP+RAVEYL GIPE + P + Q Q ++ S+
Sbjct: 158 ALRAAFNNPDRAVEYLLMGIPENLQQPPPPQQESQSAETQQQQQQQQESERQNQPEAEST 217
Query: 239 GPNANPLDLFPQ---GLPDV-GSGA----AGAGSLDFLRNSPQFQVLRAMVQANPQLLQP 290
DLF Q G D GSGA + GS+ LR +V NP+ L P
Sbjct: 218 NEQYEGEDLFAQAAQGTRDTTGSGADSNASAPGSIGLTMED--LLALRQVVSGNPEALAP 275
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEG---NLGDQLAGLMPQ---SIQVTP 344
+L+ L + PQL I + F+ ++ + V N+ + + P S+ +T
Sbjct: 276 LLESLSTRYPQLREQIMANPEVFISMLLDAVGDNLNAMENITEPVENAEPTEAPSLDLTE 335
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
++ +AI RL +GF+R +V++V+FAC+KNEE+AAN L +
Sbjct: 336 DDEQAISRLCELGFERTLVIQVYFACDKNEEIAANMLFND 375
>gi|190346878|gb|EDK39064.2| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 186/375 (49%), Gaps = 32/375 (8%)
Query: 24 VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTG 83
V K K+ QG + A Q L+Y GKVL+DD T+ ++KV E ++ M+ K K+P
Sbjct: 13 VLVAKQKLAAEQGCE---AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAK-KKPVS 68
Query: 84 EGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSES 143
+ TK +++ + T AT T+ + T + S + + S S
Sbjct: 69 DAKPE----TKTSETAGAGKSETKATEASTST--AGNETSTSGNSGTSNTSGVSGSGSGS 122
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
G + +G+ E +IQ I++MG ++R V ALRA++NNP RAVEYL +GIPE
Sbjct: 123 GAVTSGGGDFASGDEREASIQNIMEMG---YERTQVEAALRASFNNPHRAVEYLLTGIPE 179
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG----A 259
+ ++ A +G A ++P+ + + A ++ N LF G
Sbjct: 180 SLQRPQISNAAASG-AVSAPSAVSEADTSADADNTEGAEN---LFEAAAAAAQQGESGAG 235
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE 319
+GA + Q ++LR +Q NP+L+QP+L++L NPQ+ LIQ+ F+R
Sbjct: 236 SGAAGGADQGDDAQLRLLRTALQTNPELIQPLLEQLAASNPQVATLIQQDPEAFVRTF-- 293
Query: 320 PVQGGEGNLGDQLAGLMPQ---------SIQVTPEEREAIERLEAMGFDRAIVLEVFFAC 370
+G + D L +IQ++ ++ AI RL +GFDR +V++V+ AC
Sbjct: 294 LGEGEDIEFDDAEGELAAGEGGLGAGEVAIQLSEQDESAIGRLCELGFDRNLVIQVYIAC 353
Query: 371 NKNEELAANYLLDHM 385
+KNEE+AA+ L M
Sbjct: 354 DKNEEVAADILFRDM 368
>gi|146418936|ref|XP_001485433.1| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 185/375 (49%), Gaps = 32/375 (8%)
Query: 24 VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTG 83
V K K+ QG + A Q L+Y GKVL+DD T+ ++KV E ++ M+ K K+P
Sbjct: 13 VLVAKQKLAAEQGCE---AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAK-KKPVS 68
Query: 84 EGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSES 143
+ TK +++ + T AT T+ + T + S + + S S
Sbjct: 69 DAKPE----TKTSETAGAGKSETKATEASTST--AGNETSTSGNSGTSNTSGVSGSGSGS 122
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
G + G+ E +IQ I++MG ++R V ALRA++NNP RAVEYL +GIPE
Sbjct: 123 GAVTSGGGDFALGDEREASIQNIMEMG---YERTQVEAALRASFNNPHRAVEYLLTGIPE 179
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSG----A 259
+ ++ A +G A ++P+ + + A ++ N LF G
Sbjct: 180 SLQRPQISNAAASG-AVSAPSAVSEADTSADADNTEGAEN---LFEAAAAAAQQGESGAG 235
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE 319
+GA + Q ++LR +Q NP+L+QP+L++L NPQ+ LIQ+ F+R
Sbjct: 236 SGAAGGADQGDDAQLRLLRTALQTNPELIQPLLEQLAASNPQVATLIQQDPEAFVRTF-- 293
Query: 320 PVQGGEGNLGDQLAGLMPQ---------SIQVTPEEREAIERLEAMGFDRAIVLEVFFAC 370
+G + D L +IQ++ ++ AI RL +GFDR +V++V+ AC
Sbjct: 294 LGEGEDIEFDDAEGELAAGEGGLGAGEVAIQLSEQDESAIGRLCELGFDRNLVIQVYIAC 353
Query: 371 NKNEELAANYLLDHM 385
+KNEE+AA+ L M
Sbjct: 354 DKNEEVAADILFRDM 368
>gi|46124779|ref|XP_386943.1| hypothetical protein FG06767.1 [Gibberella zeae PH-1]
Length = 359
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 138/406 (33%), Positives = 187/406 (46%), Gaps = 80/406 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P + ++QGK+LKDD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSE-------------------------LFQGKILKDDETVG 35
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E FVV M+ K K PT + + P TPAA A A + +
Sbjct: 36 SYNIEEKGFVVCMVNKPK-PTKPAESSAAPPATPAAPPTRTPAAPAAPAQSASQQAAVPA 94
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP P S A SE S L G+ AI + MG ++R +
Sbjct: 95 TPTPQ--------RSADAGSEE------PSGLAMGSQRTEAIANMEAMG---FERSQIEA 137
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+NNP+RAVEYL +GIP+ + R A QP+QPA G
Sbjct: 138 AMRAAFNNPDRAVEYLLNGIPDNIRQEQQQRE------AAPAAHAAQPSQPAAAAPQGGE 191
Query: 242 ANPLDLFPQGLPDVGSGA---------------------AGAGSLDFLRNSPQFQVLRAM 280
++LF G+ A G+LDFLR++ QFQ LR +
Sbjct: 192 EGGVNLFDLAAQHGGTNARGGSGGNEAAAAAAAAAAGQGGDLGNLDFLRHNAQFQQLRQI 251
Query: 281 VQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--Q 338
VQ PQ+L+P+LQ+LG NPQL LI + FL+L+ G D L P Q
Sbjct: 252 VQQQPQMLEPILQQLGAGNPQLAELIASNPDQFLQLL--------GEYADDDVPLPPGAQ 303
Query: 339 SIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+I VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 304 AISVTEEERDAIERLCRLGFDRDAAIQAYFACDKNEELAANFLFDQ 349
>gi|259145863|emb|CAY79123.1| Rad23p [Saccharomyces cerevisiae EC1118]
gi|323349008|gb|EGA83243.1| Rad23p [Saccharomyces cerevisiae Lalvin QA23]
Length = 408
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 196/423 (46%), Gaps = 56/423 (13%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+ + K K+ S +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT--APQTAVPIS 118
E + + VV M+++ K T+ T P AP+S A TP +T +P T +
Sbjct: 58 SECGLKDGDQVVFMVSQKKST----KTKVTEPPIAPES-ATTPGRENSTEASPSTDASAA 112
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P ++ T + G V G I++I++MG + R+
Sbjct: 113 PAATAPEGSQPQEEQTATTERTESASTPG-----FVVGTERNETIERIMEMG---YQREE 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V RALRAA+NNP+RAVEYL GIPE QP + A T QP+ ++
Sbjct: 165 VERALRAAFNNPDRAVEYLLMGIPENLR-QPEPQQQTAAAAEQPSTAATTAEQPSTAATT 223
Query: 239 GPNANPLDLFPQGLP--DVGSGAAG--AGSLDFLRNSPQFQV---------LRAMVQANP 285
DLF Q + SGA G G+ D + P + LR +V NP
Sbjct: 224 AEQPAEDDLFAQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNP 283
Query: 286 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--------QGGEGNL--------G 329
+ L P+L+ + + PQL I + F+ ++ E V +G + + G
Sbjct: 284 EALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTG 343
Query: 330 DQLAGLMPQ-----SIQV--TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+ A + Q S QV TPE+ +AI RL +GF+R +V++V+FAC+KNEE AAN L
Sbjct: 344 EAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILF 403
Query: 383 -DH 384
DH
Sbjct: 404 SDH 406
>gi|156086838|ref|XP_001610826.1| DNA repair protein Rad23, putatitve [Babesia bovis T2Bo]
gi|154798079|gb|EDO07258.1| DNA repair protein Rad23, putatitve [Babesia bovis]
Length = 313
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 192/393 (48%), Gaps = 90/393 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KTL +V+VK +V ++ +ET S P+ +Q LI+ GKVLK + L
Sbjct: 1 MKLKIKTLNNLEAEVDVKDGSSVEELMKIVETHLPS--MPSDRQKLIHSGKVLKRELLLS 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ ++ VI++ + + T ST ST KAP + T A PQ PI+
Sbjct: 59 DYADIKDGDKVIVIAQKQSET--TSTVSTQSQKAPVADDRTKA---VDVPQ---PINL-- 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A S LV G+ LE I +I +MG + R V
Sbjct: 109 ---------------------------AESTLVTGSELEMNIARICEMG---FPRAEVEA 138
Query: 182 ALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
A+ AA+NNP+RAVE+L +G IP+ T M + A V G
Sbjct: 139 AMAAAFNNPDRAVEFLTTGTIPD--------------------TSMISNSSDAGVYDGG- 177
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
A+ L P + +L +++ P FQ LR ++Q++PQ+LQ +L+ +G+ +P
Sbjct: 178 -ADMLRNIPM-----------SDNLASIQSHPAFQQLRQVIQSDPQVLQRLLENIGETDP 225
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGL-----MPQSIQVTPEEREAIERLEA 355
+L++ I EHQ +F+ ++N D + G P + +T E +++ERLE
Sbjct: 226 ELLQKIIEHQDEFMEMLNS---------SDDMNGFPSADDGPNFVHLTEAEIQSVERLEG 276
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEF 388
+GF RA V+E F AC+KNEELAANYLL++ ++F
Sbjct: 277 LGFSRAAVIEAFLACDKNEELAANYLLENANDF 309
>gi|50292795|ref|XP_448830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528143|emb|CAG61800.1| unnamed protein product [Candida glabrata]
Length = 392
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 128/418 (30%), Positives = 193/418 (46%), Gaps = 67/418 (16%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K + ++++ ++ VK + D +Q LI+ GKVLKD ++
Sbjct: 1 MVSVTFKNFKKEKYPLDLESSQSIVAVKEALSEKLSCD---PSQIKLIFSGKVLKDGDSV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + + V+ M++ K+ T T S+AP KA P+ + TPAT+ Q E
Sbjct: 58 ESCNFKDGNEVIFMVSA-KKATATKVTESSAP-KAQSEETPSES-TPATSTQP------E 108
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T PA+ S S + +G V G+ I++I++MG ++R V
Sbjct: 109 TNQNETTEPATNSSSENTEAPNAGT----DDGFVVGSERNATIERIMEMG---YERAEVE 161
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RALRAA+NNP+RAVEYL GIPE P GQ + + S+
Sbjct: 162 RALRAAFNNPDRAVEYLLMGIPETLR-------PQEGQTSQ---EHEADVDMNEEESTEG 211
Query: 241 NANP---LDLFPQGLPD-----------------VGSGAAGA-GSLDFLRNSPQFQVLRA 279
NA P DLF Q D GS G GS+ LR
Sbjct: 212 NAEPPAEDDLFAQAARDSATPSAAQTAGGTTSESAGSATGGPPGSIGLTME--DLLALRQ 269
Query: 280 MVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV----QG---------GEG 326
+V NP+ L P+L+ L + PQL I + F+ ++ E V QG GEG
Sbjct: 270 VVSGNPEALAPLLENLSNRYPQLREQIMANPEVFVSMLLEAVGDNLQGAMDFEAIAEGEG 329
Query: 327 NLGDQLAGLMPQS--IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+ + G ++ I ++PE+ +AI RL +GF+R +V++V+FAC+KNEE+AAN L
Sbjct: 330 DTVEGADGFAEENAPITLSPEDEQAISRLCELGFERTLVIQVYFACDKNEEIAANMLF 387
>gi|426387417|ref|XP_004060165.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 3
[Gorilla gorilla gorilla]
gi|194375626|dbj|BAG56758.1| unnamed protein product [Homo sapiens]
Length = 198
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 133/227 (58%), Gaps = 48/227 (21%)
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPT 224
+I+ MG ++R+ VV ALRA+YNNP RAVEYL +GIP E P +G S
Sbjct: 4 EIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQV 53
Query: 225 QMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQAN 284
QPA + AAG L+FLR+ PQFQ +R ++Q N
Sbjct: 54 ----SEQPA-----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQN 86
Query: 285 PQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGL 335
P LL +LQ+LG++NPQL++ I HQ F++++NEP V+G G +G++ +
Sbjct: 87 PALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM 146
Query: 336 MPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
IQVTP+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL
Sbjct: 147 --NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLL 191
>gi|171686384|ref|XP_001908133.1| hypothetical protein [Podospora anserina S mat+]
gi|170943153|emb|CAP68806.1| unnamed protein product [Podospora anserina S mat+]
Length = 383
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 134/395 (33%), Positives = 187/395 (47%), Gaps = 38/395 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E +P D + VK K+ G D PA Q+ LIY GK+LKD+ T+E
Sbjct: 1 MKVNFKDLKQQKFTIEFEPTDLISTVKQKLSEDHGWD--PALQK-LIYSGKILKDEDTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E FVV M++K K P + S++ A + A + A V +
Sbjct: 58 SCKIEEKGFVVCMVSKPKAPKPAPAAESSSVVPATPAQAAPASTPAPPAAPAQVSNAASA 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PA ++ + S S L G AI + MG ++R +
Sbjct: 118 APATPSPNRTSGAPNDS------------SALAMGEQRAQAIANMEAMG---FERSQIDA 162
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNG-QAANSPTQMPQPTQPAPVTSSGP 240
A+RAA+ NPERAVEYL +GIPE + Q A+ G+ P P
Sbjct: 163 AMRAAFFNPERAVEYLLTGIPENVQQQTAAQRVGHAIPPPAPAAASPAPASAGEAAGDLE 222
Query: 241 NANPLDLFPQGLPDVGSGAAGA---------GSLDFLRNSPQFQVLRAMVQANPQLLQPM 291
N DL + A G+L +LR + QFQ LR +VQ P +L+ +
Sbjct: 223 GENLFDLAARAGGARSGSGGAAAAGASAQDLGNLSWLRQNAQFQQLRQVVQQQPGMLEQI 282
Query: 292 LQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEEREA 349
LQ+L NPQL + I ++ FL+L++E GD A L P I VT EER+A
Sbjct: 283 LQQLSAGNPQLAQTIAQNPEQFLQLLSEH--------GDDDAPLPPGAHQISVTEEERDA 334
Query: 350 IERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
IERL +GF + ++ +FAC KNEELAAN+L D
Sbjct: 335 IERLTRLGFSQDQAIQAYFACEKNEELAANFLFDQ 369
>gi|365991864|ref|XP_003672760.1| hypothetical protein NDAI_0L00320 [Naumovozyma dairenensis CBS 421]
gi|410729747|ref|XP_003671052.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
gi|401779871|emb|CCD25809.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
Length = 427
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 127/433 (29%), Positives = 208/433 (48%), Gaps = 62/433 (14%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+ DVK ++ + + +Q +IY GKVL+D T+
Sbjct: 1 MVNVIFKDFKKEKIPLDLEPSNTILDVKSQLAQAKACE---ESQIKIIYSGKVLQDGQTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
EE ++ E ++ M++K K + + A Q+ P T A+ T I T
Sbjct: 58 EECQLKEGDQIIFMISKKKSTVTKVTEPPAAAAAQAQAPGANPEITTASNSATPGLIETA 117
Query: 121 P---TPAPTPAPASASVSSVSATSESGVYGH-----------AASNLVAGNNLEGAIQQI 166
TP TP + + +S SA + + +++ V G +++I
Sbjct: 118 AASGTPEGTPQTGNDTTASASANTATDAGAPATTTAATELSPSSAGFVTGTQRNETVERI 177
Query: 167 LDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQM 226
++MG ++R+ V RALRAA+NNP+RAVEYL GIPE + Q + QA SP +
Sbjct: 178 MEMG---YEREEVERALRAAFNNPDRAVEYLLMGIPENLQQQHQQQQQQPTQA--SPQNI 232
Query: 227 PQPTQPAPVTSSGPNANPL------DLFPQ---GLPDVGS------GAAGAGSLDFLRNS 271
A T++G +A+ DLF Q G + GS G+ G G+ + +
Sbjct: 233 ANEGS-ATATATGDDAHAEEPPAEDDLFAQAAQGSGNAGSAGSAVGGSTGEGTPGSIGLT 291
Query: 272 PQ-FQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--------- 321
Q LR V +P+ L +L+ L + PQL I + F+ ++ E V
Sbjct: 292 IQDLLSLRQAVSGDPESLSSLLENLSTRYPQLREQIMSNPQTFISMLLEAVGDNLQSLEG 351
Query: 322 ------------QGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFA 369
+G +G+ A P +IQ+TPE+ +AI RL +GF+R++V++V+FA
Sbjct: 352 LGDIGGDLGEINEGDNDTMGE--ASAAPPTIQLTPEDEQAISRLCELGFERSLVIQVYFA 409
Query: 370 CNKNEELAANYLL 382
C+KNEE+AAN L
Sbjct: 410 CDKNEEIAANMLF 422
>gi|299751880|ref|XP_002911697.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
gi|298409576|gb|EFI28203.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
Length = 377
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 135/402 (33%), Positives = 205/402 (50%), Gaps = 37/402 (9%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+KI VKT + VEV+ DT+ VK KI G +P A Q +IY GK+L DD T+
Sbjct: 1 MVKITVKTTQQKVHHVEVELTDTIGTVKQKISDEHG---HPVAAQKIIYSGKILPDDKTI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + E F V+M++K K ++ + AP ++A A A P
Sbjct: 58 ESCALKEKDFFVLMVSKPKATPAASTSTTPAPATPAPAAAAPATAPTPAAAPAPAPSPAA 117
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P PA P+ A+ T+ G + ++G + A+Q +++MG + ++ VV
Sbjct: 118 PAPAAAPSEAT--------TAAPAQEGFGTGSFLSGAAYQNAVQNLVEMG---FPQEQVV 166
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RA+RA++NNP+RAV+YL +GIP E + A A +P P AP +
Sbjct: 167 RAMRASFNNPDRAVDYLMNGIPAHLEAEAAGPAAPAPAAGGAPAAAAAPAAQAPAPAPAA 226
Query: 241 NAN-PLDLFPQGLPDVGSGAA---------GAGSLDFLRNSPQFQVLRAMVQANPQLLQP 290
AN P +LF G G +++ LRN+PQ +R + NPQ Q
Sbjct: 227 PANQPQNLFQLAQQQQQGGGGAGAGGPTLPGGLNIETLRNNPQIAAIRQAMAQNPQAAQA 286
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNL--GDQLAGLMPQSIQVTPEERE 348
++Q+L +QNPQ+ ++I D L + P GEG++ G + + +TPEE
Sbjct: 287 LIQQLAQQNPQIAQIIGS-DPDLLTNLFLP---GEGDIPPGATV-------VNITPEENA 335
Query: 349 AIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
AIERL+ +GF R +V++ +FAC+KNEELAANYL +H + +D
Sbjct: 336 AIERLQGLGFPREVVIQAYFACDKNEELAANYLFEHGFDDDD 377
>gi|444315840|ref|XP_004178577.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
gi|387511617|emb|CCH59058.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
Length = 404
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 118/427 (27%), Positives = 193/427 (45%), Gaps = 73/427 (17%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K +E+ + T+ K +I + + D+ Q LIY GK+LK+D T+
Sbjct: 1 MVSLIFKDFKKEKIPLELDADSTIESAKGQIASEKNCDI---DQIKLIYSGKILKNDATI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGST-RSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
+ + +N ++ M++K K+ T ST + T P + TP ++
Sbjct: 58 LNSGLKDNDHIIFMISKKKKKTEPASTVKVTEPASVTTNVETQAEGTP----------NS 107
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAAS-NLVAGNNLEGAIQQILDMGGGTWDRDT 178
+P+ TP +A+ S+ +A ++ AA V G IQ+I++MG + R+
Sbjct: 108 DPSANATPEVPAATTSNAAAGDDTETTTSAADPGFVVGTERNETIQRIMEMG---YQREE 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQ----AANSPTQMPQPTQPAP 234
V ALRAA+NNP+RAVEYL GIPE + Q + A ++ ++P
Sbjct: 165 VEAALRAAFNNPDRAVEYLLMGIPEHLQHQQPQQLQQTTIQTEGATSANMELPAEDDLFA 224
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
+ G AN Q D G+ G D L LR +V NP+ L P+L+
Sbjct: 225 QAARGNQANQ-----QSTDDTPPGSIGLTMEDLL-------ALRQVVSGNPEALPPLLEN 272
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGG-EGNLGDQLAGLMP---------------- 337
L + PQL I + F+ ++ E V + +LG+ L G+
Sbjct: 273 LTTRYPQLREQIMANPEVFVSMLLEAVGDNLQHSLGNDLDGISELDQHPTANTNGEVTAE 332
Query: 338 ----------------------QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEE 375
+I +T ++ +AI RL +GF+R++V++V+FAC+KNEE
Sbjct: 333 HDSAIVTETNEAPAAGEQPSNNYNISLTEQDEQAIGRLCELGFERSLVVQVYFACDKNEE 392
Query: 376 LAANYLL 382
+AAN L
Sbjct: 393 IAANMLF 399
>gi|124802198|ref|XP_001347399.1| DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
gi|23494978|gb|AAN35312.1|AE014830_56 DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
Length = 389
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 111/421 (26%), Positives = 194/421 (46%), Gaps = 69/421 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI V+TL+ ++ V P+D++ D+K K+E V P+ +Q LI+ GK+LKD+
Sbjct: 1 MKIKVRTLQNNEEEINVDPDDSILDLKKKVEVVLAD--MPSDKQKLIFSGKILKDEDKAT 58
Query: 62 ENKVAENSFVVIMLTK---NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
+ + +N V++M+T+ NK E + + ++ + T+ +
Sbjct: 59 D-ILKDNDTVIVMVTRRIINKNNQKEDINKESLSKIENNNNNNNNKSDDNINVTTS---N 114
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
TE + ++ + + +A S L+ G+ L+ +I I MG ++++
Sbjct: 115 TEEQKENKENKNDNTNDNIYNS-----FNNAESMLLTGDKLKESIDNICAMG---FEKEQ 166
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V +A+ AYNNP RA++YL +G P + V N
Sbjct: 167 VKKAMILAYNNPNRAIDYLTNGFPNENVNVNVNENINNESNF------------------ 208
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
+N L+ L + S + + + RNS F +R M +NPQ L +LQ +G+
Sbjct: 209 ---SNLLNSENNPLLEENSSHPLSSNEETFRNSTFFNAIRDMALSNPQRLPELLQMIGRT 265
Query: 299 NPQLVRLIQEHQADFL-------RLINEPVQGGEGNL--GDQLAGLMPQS---------- 339
+P + I+++Q +FL IN+ + + NL D + S
Sbjct: 266 DPSFLEYIRQNQTEFLAALQNYGNNINDHEEHSDDNLDNADDENAIQNDSFLQDVGQQVL 325
Query: 340 ---------IQVTP---EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
I +TP E E+I++LE++GF + + LE F AC+KNEE+AANYL ++M++
Sbjct: 326 SDPNNENINIPITPLNENEMESIKKLESLGFPKHVALEAFIACDKNEEMAANYLFENMND 385
Query: 388 F 388
F
Sbjct: 386 F 386
>gi|358056787|dbj|GAA97450.1| hypothetical protein E5Q_04129 [Mixia osmundae IAM 14324]
Length = 434
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 139/251 (55%), Gaps = 25/251 (9%)
Query: 153 LVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP--- 209
+ G LE +I +++ MG + R+ RA+RA+YNNP RAVEYL +GIP +A+ P
Sbjct: 186 FLTGARLEASIAEMVSMG---FPREDCQRAMRASYNNPHRAVEYLMNGIPAEAQTAPPRA 242
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA------- 262
V A A + T PA + P++LF + A A
Sbjct: 243 VPAATTGATPAAATTTTETAATPAAPVPAPTTGQPMNLFDAARQAAQNPAPAAATGGAAR 302
Query: 263 -----GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLI 317
LD LR P F+ LR +VQ NP LLQP LQ+L + NP+L+ +IQ++Q FL+ +
Sbjct: 303 PGATEAGLDALRREPAFEQLRTLVQQNPALLQPFLQQLAQTNPRLLGIIQQNQEAFLQFL 362
Query: 318 NEPVQGGEGNLG----DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKN 373
E + GEG+ G D G+ Q +QV+ +E +AI+RL +GFDR V++ F AC++N
Sbjct: 363 GEGAE-GEGDFGFEGDDGQEGM--QHVQVSADEAQAIDRLCELGFDRQNVIQAFLACDRN 419
Query: 374 EELAANYLLDH 384
EE+AAN+L ++
Sbjct: 420 EEMAANFLFEN 430
>gi|4261672|gb|AAD13972.1|S65964_1111 Unknown [Saccharomyces cerevisiae]
gi|347495|gb|AAA34935.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|347499|gb|AAA34938.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|430824|gb|AAB28441.1| RAD23 [Saccharomyces cerevisiae]
Length = 398
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 131/423 (30%), Positives = 195/423 (46%), Gaps = 66/423 (15%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+ + K K+ S +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT--APQTAVPIS 118
E + + VV M+++ K T+ T P AP+S A TP +T +P T +
Sbjct: 58 SECGLKDGDQVVFMVSQKKST----KTKVTEPPIAPES-ATTPGRENSTEASPSTDASAA 112
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P ++ T + G V G I++I++MG + R+
Sbjct: 113 PAATAPEGSQPQEEQTATTERTESASTPG-----FVVGTERNETIERIMEMG---YQREE 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V RALRAA+NNP+RAVEYL GIPE QP + A T QPA
Sbjct: 165 VERALRAAFNNPDRAVEYLLMGIPENLR-QPEPQQQTAAAAEQPSTAATTAEQPAED--- 220
Query: 239 GPNANPLDLFPQGLP--DVGSGAAG--AGSLDFLRNSPQFQV---------LRAMVQANP 285
DLF Q + SGA G G+ D + P + LR +V NP
Sbjct: 221 -------DLFAQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNP 273
Query: 286 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--------QGGEGNL--------G 329
+ L+P+L+ + + PQL I + F+ ++ E V +G + + G
Sbjct: 274 EALRPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTG 333
Query: 330 DQLAGLMPQ-----SIQV--TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+ A + Q S QV TPE+ +AI RL +GF+R +V++V+FAC+KNEE AAN L
Sbjct: 334 EAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILF 393
Query: 383 -DH 384
DH
Sbjct: 394 SDH 396
>gi|256273801|gb|EEU08724.1| Rad23p [Saccharomyces cerevisiae JAY291]
Length = 398
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 131/423 (30%), Positives = 194/423 (45%), Gaps = 66/423 (15%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+ + K K+ S +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT--APQTAVPIS 118
E + + VV M+++ K T+ T P AP+S A TP +T +P T +
Sbjct: 58 SECGLKDGDQVVFMVSQKKST----KTKVTEPPIAPES-ATTPGRENSTEASPSTDASAA 112
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P ++ T + G V G I++I++MG + R+
Sbjct: 113 PAATAPEGSQPQEEQTATTEGTESASTPG-----FVVGTERNETIERIMEMG---YQREE 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V RALRAA+NNP+RAVEYL GIPE QP + A T QPA
Sbjct: 165 VERALRAAFNNPDRAVEYLLMGIPENLR-QPEPQQQTAAAAEQPSTAATTAEQPAED--- 220
Query: 239 GPNANPLDLFPQGLP--DVGSGAAG--AGSLDFLRNSPQFQV---------LRAMVQANP 285
DLF Q + SGA G G+ D + P + LR +V NP
Sbjct: 221 -------DLFAQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNP 273
Query: 286 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--------QGGEGNL--------G 329
+ L P+L+ + + PQL I + F+ ++ E V +G + + G
Sbjct: 274 EALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTG 333
Query: 330 DQLAGLMPQ-----SIQV--TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+ A + Q S QV TPE+ +AI RL +GF+R +V++V+FAC+KNEE AAN L
Sbjct: 334 EAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILF 393
Query: 383 -DH 384
DH
Sbjct: 394 SDH 396
>gi|398364251|ref|NP_010877.3| Rad23p [Saccharomyces cerevisiae S288c]
gi|418413|sp|P32628.1|RAD23_YEAST RecName: Full=UV excision repair protein RAD23
gi|409247|gb|AAA16070.1| DNA repair protein [Saccharomyces cerevisiae]
gi|603642|gb|AAB65005.1| Rad23p [Saccharomyces cerevisiae]
gi|51013487|gb|AAT93037.1| YEL037C [Saccharomyces cerevisiae]
gi|151944674|gb|EDN62933.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
gi|190405529|gb|EDV08796.1| UV excision repair protein RAD23 [Saccharomyces cerevisiae RM11-1a]
gi|285811588|tpg|DAA07616.1| TPA: Rad23p [Saccharomyces cerevisiae S288c]
gi|323309458|gb|EGA62674.1| Rad23p [Saccharomyces cerevisiae FostersO]
gi|323333880|gb|EGA75269.1| Rad23p [Saccharomyces cerevisiae AWRI796]
gi|349577621|dbj|GAA22789.1| K7_Rad23p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765999|gb|EHN07500.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299909|gb|EIW11001.1| Rad23p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 398
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 131/423 (30%), Positives = 194/423 (45%), Gaps = 66/423 (15%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+ + K K+ S +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT--APQTAVPIS 118
E + + VV M+++ K T+ T P AP+S A TP +T +P T +
Sbjct: 58 SECGLKDGDQVVFMVSQKKST----KTKVTEPPIAPES-ATTPGRENSTEASPSTDASAA 112
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P ++ T + G V G I++I++MG + R+
Sbjct: 113 PAATAPEGSQPQEEQTATTERTESASTPG-----FVVGTERNETIERIMEMG---YQREE 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V RALRAA+NNP+RAVEYL GIPE QP + A T QPA
Sbjct: 165 VERALRAAFNNPDRAVEYLLMGIPENLR-QPEPQQQTAAAAEQPSTAATTAEQPAED--- 220
Query: 239 GPNANPLDLFPQGLP--DVGSGAAG--AGSLDFLRNSPQFQV---------LRAMVQANP 285
DLF Q + SGA G G+ D + P + LR +V NP
Sbjct: 221 -------DLFAQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNP 273
Query: 286 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--------QGGEGNL--------G 329
+ L P+L+ + + PQL I + F+ ++ E V +G + + G
Sbjct: 274 EALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTG 333
Query: 330 DQLAGLMPQ-----SIQV--TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+ A + Q S QV TPE+ +AI RL +GF+R +V++V+FAC+KNEE AAN L
Sbjct: 334 EAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILF 393
Query: 383 -DH 384
DH
Sbjct: 394 SDH 396
>gi|4336714|gb|AAD17913.1| repC-binding protein A [Dictyostelium discoideum]
Length = 341
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 174/410 (42%), Gaps = 102/410 (24%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +K + + EV + TV ++K I + Q LIY GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ ++ F+ +M+ K P +AP A TPA P+T P IST
Sbjct: 58 SYNITDSGFIXMMIKK--------------PREAP---ATTPA--PSTTPHLNY-ISTNH 97
Query: 122 TPAPTPAP---------------------------ASASVSSVSATSESGVYGHAASNLV 154
P +S + S S +S+
Sbjct: 98 HHYCRTNPNHXLTNNTSTTTPTSVPTPTNNTPATPNPTPTTSSTPGSTSTTSPQQSSDFA 157
Query: 155 AGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAP 214
G LE I+ I DMG + RD V+RALR +NN ERA+EYL SG
Sbjct: 158 TGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVSG-------------- 200
Query: 215 GNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQF 274
N AAN P + NP + LRN P F
Sbjct: 201 -NIPAANDPEDEEEMEGGGGSGD-----NPFEA--------------------LRNHPHF 234
Query: 275 QVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAG 334
+LR + NP ++ +LQ+L + NP LVR IQE+ +F+RL G
Sbjct: 235 NLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLFQGDGNPG--------GN 286
Query: 335 LMPQSIQVTPEEREAIERLEAM-GFDRAIVLEVFFACNKNEELAANYLLD 383
++QVT EE EAI+RL+A+ G D++ V+E +FAC+KNEEL A+YL +
Sbjct: 287 PGQFTLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 336
>gi|68066300|ref|XP_675133.1| DNA repair protein RAD23 [Plasmodium berghei strain ANKA]
gi|56494136|emb|CAH99316.1| DNA repair protein RAD23, putative [Plasmodium berghei]
Length = 368
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 110/409 (26%), Positives = 189/409 (46%), Gaps = 66/409 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI V+TL+ T ++ V DT+ D+K KIE V P +Q LI+ G +L +
Sbjct: 1 MKIKVRTLQNTEEEINVDSNDTISDLKKKIENVFPE--MPCDKQKLIFSGNIL-----MN 53
Query: 62 ENKVA----ENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPI 117
E+KV EN V++M+T+ + + ++ A A S +
Sbjct: 54 EHKVVDILKENDIVIVMVTRKIITSKKNNSTKNANELASSDSLKNKDEKNSDDKNNDKTK 113
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
+T+ + ES + S L+ G+ L+ I I MG ++R+
Sbjct: 114 NTD-----------------TENKESENISNPESILLTGDKLKETIDNICAMG---FERE 153
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ-PAPVT 236
V +A+ AYNNP A++YL +G + G+G +++ P++ P
Sbjct: 154 LVQKAMTLAYNNPNVAIDYLTNGFQD---------IIGDGHDI---SEIKDPSENPNERD 201
Query: 237 SSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELG 296
N + L L L D + + LRNSP F ++R +NPQ + +L+ +G
Sbjct: 202 EKYSNLSNL-LMNYNLLDENERQEMPVNSESLRNSPFFNIIRDAALSNPQRIPEILEMIG 260
Query: 297 KQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQ--------------SIQV 342
+ +P L+ I+E+Q +FL +Q + + + L+P +I +
Sbjct: 261 RSDPSLLEYIRENQNEFLN----ALQNYDTDNNNSENDLIPNYEYTDETNQNNDNFNIPI 316
Query: 343 TP---EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEF 388
T E E++ +LE++GF + + LE F AC+KNEE+AANYL ++M+++
Sbjct: 317 TSLNESEMESVRKLESLGFPKHVALEAFIACDKNEEMAANYLFENMNDY 365
>gi|83033008|ref|XP_729289.1| DNA repair protein RAD23 [Plasmodium yoelii yoelii 17XNL]
gi|23486634|gb|EAA20854.1| putative DNA repair protein RAD23 [Plasmodium yoelii yoelii]
Length = 368
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 194/412 (47%), Gaps = 72/412 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYP---AAQQMLIYQGKVLKDDT 58
MKI V+TL+ T ++ V DT+ D+K KIE V +P +Q LI+ G +L
Sbjct: 1 MKIKVRTLQNTEEEINVDNNDTILDLKKKIENV-----FPEMACDKQKLIFSGNIL---- 51
Query: 59 TLEENK----VAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTA 114
++E+K + EN V++M+T+ K T + TK A + + +
Sbjct: 52 -IDEDKAVDILKENDIVIVMVTR-KIITN----KKNNSTKNANELASSDSLKNKDEKNSD 105
Query: 115 VPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
+ + T + ++S+ + L+ G+ L+ I I MG +
Sbjct: 106 DKNNDKTKNTDTENKGNENISNPESI------------LLTGDKLKETIDNICAMG---F 150
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ-PA 233
+R+ V +A+ AYNNP A++YL +G + + + ++M ++ P
Sbjct: 151 ERELVQKAMTLAYNNPNVAIDYLTNGFQDIID------------DGHDISEMKDSSENPN 198
Query: 234 PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQ 293
+ N + L L L D + + + LRNSP F ++R +NPQ + +L+
Sbjct: 199 DRDENYSNLSNL-LMNYNLLDENERQEMSVNSESLRNSPFFNIIRDAALSNPQRIPEILE 257
Query: 294 ELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQ--------------S 339
+G+ +P L+ I+E+Q +FL +Q +G+ + L+P +
Sbjct: 258 MIGRSDPSLLEYIRENQNEFLN----ALQNYDGDNNNAENDLIPNYEYADETNQNNDNFN 313
Query: 340 IQVTP---EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEF 388
I +T E E++ +LE++GF + + LE F AC+KNEE+AANYL ++M+++
Sbjct: 314 IPITSLNESEMESVRKLESLGFPKHVALEAFIACDKNEEMAANYLFENMNDY 365
>gi|320166179|gb|EFW43078.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 331
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 137/257 (53%), Gaps = 42/257 (16%)
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
A+ LV + E I Q+++ G ++RD VVRALRAA+NNP+RA EYL++GIP E Q
Sbjct: 77 ANALVVDEDQERVILQLMEFG---FERDQVVRALRAAFNNPDRAAEYLFNGIPRHVE-QA 132
Query: 210 VARAPGNGQAANSPTQMPQPTQ-----------PAPVTSSGPNANPLDLFPQGLPDVGSG 258
+A+ G G Q PQ Q PAP G DLF D G
Sbjct: 133 LAQQIGGGAHQQQQPQQPQAQQQQQGQPTQTQAPAPAQLGG------DLFAGDYEDEGDE 186
Query: 259 AAGAGS-----LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADF 313
+ L+FLR+ PQF LR +VQ NP LL P+L ++G+ NPQL++ I +H F
Sbjct: 187 GEDEDADGPNPLEFLRSQPQFDQLRQLVQQNPNLLPPLLAQIGQANPQLLQAIDQHPQAF 246
Query: 314 LRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIER--------LEAMGFDRAIVLE 365
LRL+ EP G G AG I+VT EE EAI R LEA+GF V+E
Sbjct: 247 LRLLQEPAGGAPG------AG--QNVIRVTQEEHEAIARVSITERVVLEALGFSHHRVIE 298
Query: 366 VFFACNKNEELAANYLL 382
+FAC+KNE LAAN L
Sbjct: 299 AYFACDKNENLAANLLF 315
>gi|194764815|ref|XP_001964524.1| GF23005 [Drosophila ananassae]
gi|190614796|gb|EDV30320.1| GF23005 [Drosophila ananassae]
Length = 318
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 174/388 (44%), Gaps = 84/388 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI ++TL + +E+ V +K ++ ++ + P Q LIY G++++D L
Sbjct: 1 MKISIRTLDQRTIKLEMSDSQDVRALKQRLGSMPEVAI-PVESQQLIYGGRIMEDALPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPA-TAPQTAVPISTE 120
+ K+AE+ F+V+M K P A PA TA + VP
Sbjct: 60 DYKIAEDKFIVLMGKK------------------------MPPAKPAGTAAEENVP---- 91
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNN-LEGAIQQILDMGGGTWDRDTV 179
PTP T P+ + S + A E ++ ++ MG G + V
Sbjct: 92 PTPPLTAGPSETRTHEIPPLSPAPALVMAPPPAPPSMTPNEQRVRDLMAMGYGEQE---V 148
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
ALRA++N+PERA+EYL SGIP+ N+P QPA T+SG
Sbjct: 149 RAALRASFNHPERAIEYLISGIPQ-----------------NAP-------QPANATASG 184
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
P N L + P+F +R M++ NP+LL+ +L L + +
Sbjct: 185 PAPN---------------------LQPWMSDPRFARVRDMLRQNPELLEVVLSRLAETD 223
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGD-----QLAGLMPQSIQVTPEEREAIERLE 354
P I++HQ +FL +IN G G D ++ I +T EE A+ERL
Sbjct: 224 PSAFEAIRDHQDEFLSMINGSSAGSVGEGSDLSEDSEMDAASRHQITLTSEEAAAVERLV 283
Query: 355 AMGFDRAIVLEVFFACNKNEELAANYLL 382
++GF R + ++ + AC+KNEELAA+ L
Sbjct: 284 SLGFHRDLAVQAYLACDKNEELAADILF 311
>gi|336371729|gb|EGO00069.1| hypothetical protein SERLA73DRAFT_167911 [Serpula lacrymans var.
lacrymans S7.3]
Length = 380
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 136/267 (50%), Gaps = 49/267 (18%)
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV 210
++ V G L ++ +++MG ++R+ V+RALRA+YNNP+RAVEYL++GIP E +
Sbjct: 135 NSFVTGEVLNTTVRNMMEMG---FEREQVMRALRASYNNPDRAVEYLFNGIPAHLEAEAA 191
Query: 211 ARAPGNGQAANSPT----------------------QMPQPTQPAPVTSSGP---NANPL 245
A Q + Q Q GP ANP
Sbjct: 192 GPAAPPAQPPAGGGAAPAAAPAPAPQPAVPPPNQPQNLFQLAQQQQQQQQGPATGGANPF 251
Query: 246 DLFPQGLPDVGSGAAGAGSLDF--LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLV 303
GAG +D LR++PQ Q LR +V ANPQL QP++Q+L NPQ
Sbjct: 252 --------------GGAGPIDMAALRDNPQVQHLRELVAANPQLAQPIIQQLAASNPQFA 297
Query: 304 RLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIV 363
++ ++ ++L+ +G G+ Q I VTPEE+ AIERLEA+GF R V
Sbjct: 298 QMFAQNPEALMQLLM-----NQGEGGEGGLPPGAQYINVTPEEQAAIERLEALGFPRQAV 352
Query: 364 LEVFFACNKNEELAANYLLDHMHEFED 390
+E +FAC+KNEELAANYL + E +D
Sbjct: 353 IEAYFACDKNEELAANYLFEGGFEDDD 379
>gi|330803429|ref|XP_003289709.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
gi|325080219|gb|EGC33784.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
Length = 349
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 182/388 (46%), Gaps = 48/388 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +K + + E+ + TV D+K I + + P+ Q LIY GK+L+D TLE
Sbjct: 1 MKLTIKNINKEVYSFELDSDKTVLDLKNSI--FEKYNQIPSWQ-TLIYSGKILEDKNTLE 57
Query: 62 ENKVAENSFVVIMLTKNKRP---TGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
K++E F+V+M+ K + S + + + ++ PA T + T P
Sbjct: 58 SYKISEQGFIVMMIKKPREAPATATTTSPSESTSSPSNSTTTSQPANTTSAPVTTPNPTP 117
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
PT S++ + +++ S ++++ V G LE I+ I+DMG + R+
Sbjct: 118 ARPTTPNPTPTTSSTPGTTPSSNTSPSQNTSSTDFVTGTELENTIKNIVDMG---FQREQ 174
Query: 179 VVRALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V+RALR YNN +RAVE L SG IPE A N P
Sbjct: 175 VIRALRLGYNNADRAVELLLSGSIPENA---ADDEEEDNMDVGGGGNDQQGGDNPFEALR 231
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
+ P FP +LR + +P ++ +LQ+L +
Sbjct: 232 NHP------YFP--------------------------MLRQAIAQDPNIIPTLLQQLAQ 259
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM- 356
NP+LVR I E DF+R+ G G +G G +IQVT EE +AIERL+ +
Sbjct: 260 SNPELVRQISERPNDFIRIFQGEEGGNGGGVGGSQPGQF--TIQVTREENDAIERLQQLT 317
Query: 357 GFDRAIVLEVFFACNKNEELAANYLLDH 384
G ++ +V+E +FAC+KNEELAA+YL +
Sbjct: 318 GLEKQVVIEAYFACDKNEELAASYLFER 345
>gi|90657662|gb|ABD96960.1| hypothetical protein [Cleome spinosa]
Length = 435
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/78 (82%), Positives = 72/78 (92%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPEDTV DVK IETVQ DVYPAAQQMLI+QGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIETVQSPDVYPAAQQMLIHQGKVLKDETTME 60
Query: 62 ENKVAENSFVVIMLTKNK 79
ENKVAENSF+VIML+K+K
Sbjct: 61 ENKVAENSFIVIMLSKSK 78
>gi|367007439|ref|XP_003688449.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
gi|357526758|emb|CCE66015.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
Length = 369
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 186/405 (45%), Gaps = 70/405 (17%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I K K +++ TV K ++ + D +Q LIY GKVL+D ++
Sbjct: 1 MVSILFKDFKKQKISLDLPASSTVLHAKKQLAEQKECD---DSQIKLIYSGKVLQDSNSI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + + V+ M++K K T+ T PT++ + +AP AA+ P++
Sbjct: 58 EGCGLKDGDQVIFMISKKKSTV----TQVTEPTESKEVAAPEVAAS--------APVAES 105
Query: 121 PTPAPTPAPASASVSS---VSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
A APA ++ V+A+++ G V G+ A+ +I++MG ++R+
Sbjct: 106 TETATEAAPAHSTTEGQQPVTASNDPG--------FVVGSQRNEAVDRIMEMG---YERE 154
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
V RALRAA+NNP+RAVEYL GIP+ +Q + P Q A PT T+ A
Sbjct: 155 EVERALRAAFNNPDRAVEYLLMGIPDH--LQQQQQQPQVTQEAQEPT--SGSTEVAQTAG 210
Query: 238 SGPNANPLDLFPQG----LPDVGSGAAGAGSL--DFLRNSPQFQVLRAMVQANPQLLQPM 291
+ N DLF Q D +GA+ AGS LR +V NP+ L P+
Sbjct: 211 EQGDINEDDLFAQAAQNNATDGSTGASAAGSQPGSIGLTMEDLLALRQIVAGNPEALGPL 270
Query: 292 LQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS------------ 339
L+ L + PQL I + F+ ++ E V GD L G M
Sbjct: 271 LENLSTRYPQLREQILSNPEVFVSMLLEAV-------GDNLQGSMDSEFDNLGLTEGAEG 323
Query: 340 ------------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNK 372
I +T + +AI RL +GF+R++V++V+FAC+K
Sbjct: 324 DEGEESELAQPPISLTEADEQAISRLCELGFERSLVVQVYFACDK 368
>gi|157126297|ref|XP_001654581.1| uv excision repair protein rad23 [Aedes aegypti]
gi|108882553|gb|EAT46778.1| AAEL002077-PA [Aedes aegypti]
Length = 347
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 175/387 (45%), Gaps = 54/387 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPE-DTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
MKI +KTLK +F +EV E DTV +K K D YP +Q LIY GK+++DD L
Sbjct: 1 MKITIKTLKQEAFQIEVDVEKDTVRTLKEKFFQESKQD-YPVERQRLIYLGKIMEDDLPL 59
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
+ + FVV+M NK+PT + + + + + + + A + Q+ E
Sbjct: 60 SHYSLDDKKFVVVM---NKKPTTAPAEPAASSSATAPAESKSSTAKSESGAQS------E 110
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T A + AP E ++++ +Q+I +MG + +
Sbjct: 111 ATAAASKAPEEKPKEQEKKEEEEKPKEDKKPEEPPQDDIQIKVQRITEMG---YSLEEAR 167
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
AL NNP+RAVEYL S I + G +A Q ++ A
Sbjct: 168 IALEICDNNPDRAVEYLLSEIATSSMGGGGGGGGSGGGSAAVSGGTTQESRLA------- 220
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
FLR P F ++ ++Q +P LL +LQ++ NP
Sbjct: 221 --------------------------FLREHPTFLEMKRLLQEDPSLLPHLLQKIQSSNP 254
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLG-----DQLAGLMPQSIQVTPEEREAIERLEA 355
L+R+I E+Q +FL LINE + G +G + A M S+ T + +AI+RL+A
Sbjct: 255 DLMRIISENQVEFLSLINEGTEEPTGRMGVPRELETTAAAMVDSL--TQSDMDAIDRLKA 312
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLL 382
+GF +V++ + AC +NE AA++L+
Sbjct: 313 LGFPEHLVIQAYIACERNEYQAADFLV 339
>gi|219112521|ref|XP_002178012.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410897|gb|EEC50826.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
Length = 434
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 152/321 (47%), Gaps = 66/321 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG F++ + TV DVK IE + A LI+ GKVLKD+ ++
Sbjct: 1 MKLLVKTLKGEKFEIHAEESQTVADVKGIIEATKSE--LSAGTLKLIHSGKVLKDEDSIA 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ EN F+V+M+TK K+P A PAATP P
Sbjct: 59 SAGIKENDFLVVMVTKAKKPV-----------------AAKPAATPT------------P 89
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PA TP P A+ +S+ + + AA + E A+ + MG + V
Sbjct: 90 VPAATPGPPVAAAASIETPAPTAAATPAAPTRADDVSAE-AVANLTSMG---FPEAEVKH 145
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
LRAA+ NP+ AVE+L +GIPE G +AA + + A SS +
Sbjct: 146 CLRAAHGNPDIAVEFLTNGIPE-----------GVAEAAAAMNTSAVTSPSASSESSSGS 194
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
PL LRN PQF LR +VQ+NPQ+LQ +L ++G+Q PQ
Sbjct: 195 GQPLQA--------------------LRNHPQFNDLRRLVQSNPQMLQQVLTQIGQQQPQ 234
Query: 302 LVRLIQEHQADFLRLINEPVQ 322
L++ I +QA FL+++NEPV+
Sbjct: 235 LLQEINANQALFLQIMNEPVE 255
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 277 LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLM 336
+ AM+ +P L+ Q +G+ P E + F+ + + GGEG + + G
Sbjct: 310 MAAMMGLSPDQLRQTAQMIGQMPP-------EQLSQFMM---QAMGGGEGP--ESMGG-- 355
Query: 337 PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
Q +++T EE A++RL MGFDR+ + F AC+KNE LAAN L+D M
Sbjct: 356 SQVLRLTEEEMAAVDRLAEMGFDRSEAAQAFLACDKNEALAANLLMDSM 404
>gi|308510422|ref|XP_003117394.1| CRE-RAD-23 protein [Caenorhabditis remanei]
gi|308242308|gb|EFO86260.1| CRE-RAD-23 protein [Caenorhabditis remanei]
Length = 323
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 181/392 (46%), Gaps = 78/392 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
+ + +TL +F +E+ E T+ +VK + + +G D P Q+ LIY GK+L D T +
Sbjct: 3 LSVAFRTLTQLNFHLELNEEQTIAEVKALVASERGDDYAPELQK-LIYNGKILDDATKVG 61
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + FVV+ML K K AA PA+ ++ P+ E
Sbjct: 62 EVGFDSSKFVVVMLAKKK----------------------VTAAEPASTATSSAPVVQEN 99
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P+ APA AS++ + + + E + I MG +DR+ +
Sbjct: 100 APSTPAAPAPASIADPVPAAPAAAEQLTSQQ-------EDTVSAITGMG---YDREQTIA 149
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAA+ N +RAVE+L +GIPE Q A AP + +
Sbjct: 150 ALRAAFWNADRAVEFLLTGIPEDVVDQEPLLA------------------DAPAVENEED 191
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
AN L+ L N PQ +R M+Q NP++L +LQ+L NP+
Sbjct: 192 AN-------------------DDLNMLANMPQLGEIRNMIQQNPEMLAAVLQQLAAVNPR 232
Query: 302 LVRLIQEHQADFLRLIN--EPVQGG--EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMG 357
LV+ IQ +Q F+ ++N P GG EGN Q I ++PEE EAI R++++
Sbjct: 233 LVQTIQNNQQAFMDILNGSAPPAGGVEEGNA--QARQPRRHVIHLSPEEAEAIARIKSIV 290
Query: 358 FD--RAIVLEVFFACNKNEELAANYLLDHMHE 387
+ A+V+E +FAC+KNEE A N++ + E
Sbjct: 291 SNAPEALVVEAYFACDKNEEAAINFIFSSLDE 322
>gi|390335920|ref|XP_001176797.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Strongylocentrotus purpuratus]
Length = 467
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 169/356 (47%), Gaps = 44/356 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M I +KTL+ +F VE++ TV ++K +IE QG D +PA+ Q LIY GK+L DD L
Sbjct: 1 MLIVLKTLQQQTFRVEIEDSATVRNLKDEIEKTQGKD-FPASGQKLIYAGKILSDDNPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP---QTAVPIS 118
+ E SFVV+M+T KR E PQ +A +A+ ++AP + +
Sbjct: 60 SYNIDEKSFVVVMVT--KRLQTEEKKEEKKEEAKPQETAAAASASASSAPVAMEEGTTKA 117
Query: 119 TEPTPAPTPAPASASVSSVSATSESGV--YGHAASNLVAGNNLEGAIQQILDMGGGTWDR 176
E A A+ + S SG+ + A S LV G + + +++ +G + R
Sbjct: 118 AEEKKTEEKAAEPAAETKTQEESSSGLQAFHSAESTLVTGEEYQNMVTELMSLG---FPR 174
Query: 177 DTVVRALRAAYNNPERAVEYLY-----SGIPEQAEVQPVARAPGNGQAANSPTQM----- 226
D V+RA++A+YNNP RA EYL I QA + + N T++
Sbjct: 175 DKVIRAMQASYNNPNRAAEYLVVSNKGGAIAHQAFHSAESTLVTGEEYQNMVTELMSLGF 234
Query: 227 PQPTQPAPVTSSGPNAN-PLDLFPQGLPD----------------------VGSGAAGAG 263
P+ + +S N N + G+PD G +
Sbjct: 235 PRDKVIRAMQASYNNPNRAAEYLVVGIPDPPPETPGDQPPSQPSLQSSQSSSQPGGESSP 294
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE 319
SL+FL PQFQ LR + ++P +L LQ LG+ NPQL+++I + Q +F+ LIN+
Sbjct: 295 SLEFLDQLPQFQQLREAISSDPAMLSQFLQSLGQSNPQLLQIISQRQEEFIALINQ 350
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 36/43 (83%)
Query: 340 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
I++ PEER+AIERL+ +GF +V++ +FAC+KNE LAAN+LL
Sbjct: 422 IELMPEERDAIERLKGLGFPEELVIQAYFACDKNENLAANFLL 464
>gi|323451497|gb|EGB07374.1| hypothetical protein AURANDRAFT_53989 [Aureococcus anophagefferens]
Length = 371
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 126/391 (32%), Positives = 176/391 (45%), Gaps = 73/391 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + VKTL+G F VE PE T+ VK IE Q AA LI+ GKVLKD+ TL
Sbjct: 1 MLVAVKTLEGRLFKVEAAPESTIGAVKGLIEASQPE--LKAAAMKLIHSGKVLKDEDTLA 58
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ V E SF+V M+TK KR + AP A +AP P+ +AP +
Sbjct: 59 DKGVTEQSFLVCMVTKPKRAAAPKPAAAPAPAPAAAPAAPPPSTPAPSAPAPTPAPAPAE 118
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TPA +PA +S T+E A+ Q+ MG G D+
Sbjct: 119 TPAGLQSPA----ASPHVTAE-------------------ALAQLDAMGFGHADQSRA-- 153
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
AL AA N + AVE+L +GIP++A + A + P T
Sbjct: 154 ALEAAMGNVDLAVEFLMNGIPDEAALTGANLDGDGDAAMDDAGASPLAT----------- 202
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
LR PQF LR +QANP LQ +L +G+ +P+
Sbjct: 203 --------------------------LRAHPQFDDLRRTIQANPGALQQVLAGIGRDSPE 236
Query: 302 LVRLIQEHQADFLRLINEPVQGG---------EGNLGDQLAGLMPQSIQVTPEEREAIER 352
L+ LI +QA+FL+++NEP+ G G G +++T EE +A+ R
Sbjct: 237 LLALIHANQAEFLQMMNEPLLGAISGGGGMGGGGRGPPGGGGGAGNVVRLTREEADAVGR 296
Query: 353 LEAMGFDRAIVLEVFFACNKNEELAANYLLD 383
L+ +GF R ++ + AC+KNE LAAN L D
Sbjct: 297 LQELGFSRDDAVQAYLACDKNESLAANLLFD 327
>gi|156837209|ref|XP_001642636.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156113188|gb|EDO14778.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 404
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 187/428 (43%), Gaps = 75/428 (17%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I K K ++++ TV D K +I + + +Q LIY GKVL++D+T+
Sbjct: 1 MVSITFKDFKKEKIPLDLEGSVTVLDAKKQIAVKKDCE---DSQIKLIYSGKVLQNDSTI 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRST--------APTKAPQSSAPTPAATPATAPQ 112
+ + + V+ M++K K+ TG T +T + ++ P + Q
Sbjct: 58 GDCGLKDGDQVIFMISK-KKSTGTKVTEATPVAASTAADASATSVAAVAEPEQQTVASEQ 116
Query: 113 TAVPISTEPTPAPTPAPASASVSSVSAT-SESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
E P AP S+ G V G+ A+++I++MG
Sbjct: 117 ATESNGNEEAPQQEEAPQQGGQQEQVQVQSDEG--------FVVGSQRNEAVERIMEMG- 167
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ 231
++RD V RA+RAA+NNP+RAVEYL GIPE + Q + Q S T+
Sbjct: 168 --YERDEVNRAMRAAFNNPDRAVEYLLMGIPEHLQQQEQQQEQQQEQHVES-------TE 218
Query: 232 PAPVTSSGPNAN----PLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQV---------LR 278
A + N + +DLF Q G +A P + LR
Sbjct: 219 VATTEETNDNEDVDNGEVDLFTQAAQGNGDSSAAPRGAAGAAGGPPGSIGLTMEDLLALR 278
Query: 279 AMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQ 338
+V NP+ L P+L+ L + PQL I + F+ ++ E V GD L G+M +
Sbjct: 279 QVVAGNPEALAPLLENLSIRYPQLREQILANPEVFVSMLLEAV-------GDNLQGVMGE 331
Query: 339 S------------------------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNE 374
+Q++ E+ +AI RL +GF+R +V++V+FAC+KNE
Sbjct: 332 EFEGLAGGELGGNDDASAAGQEQHIVQLSEEDEQAISRLCELGFERNLVIQVYFACDKNE 391
Query: 375 ELAANYLL 382
E+AAN L
Sbjct: 392 EIAANILF 399
>gi|169597111|ref|XP_001791979.1| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
gi|160707447|gb|EAT90986.2| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
Length = 386
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 184/391 (47%), Gaps = 70/391 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI K LK F +E +P +T+ ++K KI+ +G +V QQ LIY GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGELKAKIQADKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E ++ + +A ++ ++ AT AT P
Sbjct: 58 SYSI-EEKGFIVCMVSKTPAAPAAPAPLSAVSQNAPATPSPAPATQATGRNFDDP----- 111
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
S L GN E A+ + MG D D
Sbjct: 112 -----------------------------SALTMGNEREAAVANMESMGFARADIDA--- 139
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A+RAA+ NP+RAVEYL +GIP+ A + A A +SPT A SG +
Sbjct: 140 AMRAAFFNPDRAVEYLLTGIPDSARQEQAQAA--QANAPSSPTPAAGGNTGATAAPSGGD 197
Query: 242 ANPLDLFPQGLPDVGSGAA----------------GAGSLDFLRNSPQFQVLRAMVQANP 285
P++LF G A A SL+FLRN+PQFQ LR +VQ P
Sbjct: 198 -EPINLFEAARGGSGGAARSGATGAAAGAGGATALNANSLEFLRNNPQFQQLRQVVQQQP 256
Query: 286 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVT 343
Q+L+P+LQ++G NPQL ++I + FL+L+ E D A L P Q+I VT
Sbjct: 257 QMLEPILQQVGAGNPQLAQMIAANPEQFLQLLAED--------ADDDAPLPPGTQAISVT 308
Query: 344 PEEREAIERLEAMGFDRAIVLEVFFACNKNE 374
+EREAIERL +GF+R IV++ +FAC+KNE
Sbjct: 309 EDEREAIERLCRLGFERDIVIQAYFACDKNE 339
>gi|340959556|gb|EGS20737.1| putative excision repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 376
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 192/392 (48%), Gaps = 45/392 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +K LK F VE +P D + VK KI QG D P +Q+ LIY GK+LKD+ T+E
Sbjct: 1 MKITIKDLKQNKFTVEAEPTDLISTVKQKIADSQGWD--PKSQK-LIYSGKILKDEDTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E FVV ++ K K ++ AP + AP +TPA A + P
Sbjct: 58 SYKIEEKGFVVCVVQKPKAEPKSAPAAGSSSAAAPATPAPAQTSTPAAPAAPAPAAAPAP 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T A PA + + + A + A+ A N+E MG D +R
Sbjct: 118 TAAAAPATPTPTRTDPEAFRDPNSLAIGAARAEAIANMEA-------MGFERSQIDIAMR 170
Query: 182 ALRAAYNNPERAVEYLYSGIPE--QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
AA+NNPERAVEYL +GIP Q E QP + SP AP
Sbjct: 171 ---AAFNNPERAVEYLLNGIPPHLQQEAQP----------SRSPAGASAAPSAAPAAPED 217
Query: 240 PNANPLDLFPQGLPDVGSGAAGA----------GSLDFLRNSPQFQVLRAMVQANPQLLQ 289
N N DL Q GS A G+L++LR++ QFQ LR +VQ PQ+L+
Sbjct: 218 DNVNLFDLAAQQGRGSGSRGASGAGAAAQQQGLGNLEWLRHNSQFQQLRQVVQQQPQMLE 277
Query: 290 PMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEER 347
P+LQ L NPQL +I + FL L++E GD A L P I VT EER
Sbjct: 278 PILQTLSASNPQLAHVIATNPDQFLELLSET--------GDDDAPLPPGAHQISVTEEER 329
Query: 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
+AIERL +GF + ++ +FAC+KNEELAAN
Sbjct: 330 DAIERLVRLGFTQDQAIQAYFACDKNEELAAN 361
>gi|211909006|gb|ACJ12793.1| RAD23-like protein B [Sebastiscus marmoratus]
Length = 277
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 120/202 (59%), Gaps = 24/202 (11%)
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
E T +PT PAS SV S A++ + + A SNLV G + + + +++ MG ++R+ V
Sbjct: 56 EETQSPTAEPASTSVGSSEASTNTNLIDEAVSNLVTGASYDAMVNEMMLMG---YEREQV 112
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA++NNP+RAVEYL +GIP R PG AA +P PV SG
Sbjct: 113 VAALRASFNNPDRAVEYLLTGIP--------GRDPG--PAAGLDAVVP------PV--SG 154
Query: 240 PNANPLDLFPQGLP-DVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
++ P+ LP + GS +G L FLR+ PQF V+R ++Q N LL +LQE+G++
Sbjct: 155 VHSAPIGGI--SLPANTGSSPSGGNPLSFLRSQPQFHVMRQLIQQNAALLPALLQEIGRE 212
Query: 299 NPQLVRLIQEHQADFLRLINEP 320
NP+L++ I HQ F++++NEP
Sbjct: 213 NPELLQEISSHQEQFIQMLNEP 234
>gi|258571718|ref|XP_002544662.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
gi|237904932|gb|EEP79333.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
Length = 371
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 129/401 (32%), Positives = 193/401 (48%), Gaps = 85/401 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---------- 51
MK+ + LK F ++ +P +T+ +K KI +G D AAQQ LIY G
Sbjct: 1 MKLSFRDLKQQKFTIDAEPSETIGQLKEKIAQEKGWD---AAQQKLIYSGELHFERHLRL 57
Query: 52 ---------------KVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAP 96
K+L++ T+E + E FVV M++K K T P
Sbjct: 58 ARDLNLLSDVRPSTGKILQNANTIESYNIEEKGFVVCMVSKPK----------TQP---- 103
Query: 97 QSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAA-----S 151
AP+ A P+ P T P T AP+ + + S + S G AA S
Sbjct: 104 ---APSTPAGPSQPPATPAPAQTSTPAAPSAPAPATNDPSAPPATPSPAGGDAAAFNNPS 160
Query: 152 NLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA 211
L+ G+ E A+Q++ MG + R + RA+RAA+ +P+RA+EYL +GIP+ E QP A
Sbjct: 161 TLLMGSQSEAAVQEMEAMG---FPRADIDRAMRAAFFHPDRAIEYLLNGIPDTPE-QPAA 216
Query: 212 RAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLF-----------------PQGLPD 254
R +A + + +P P P ++ P+ P++LF
Sbjct: 217 R---EQPSAPAQSNVPVPPSNQPAANAEPD-EPINLFEAAAQAAQGGGARGTRTAGASLG 272
Query: 255 VGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFL 314
+G G +LDFLRN+P FQ LR +VQ P +L+P+LQ+LG NPQL +LI ++Q FL
Sbjct: 273 GAAGGEGLSNLDFLRNNPHFQQLRQLVQQQPGMLEPILQQLGAGNPQLAQLIGQNQEQFL 332
Query: 315 RLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEEREAIERL 353
+L++E ++ L P +I VT EER+AIER+
Sbjct: 333 QLLSEDIEDD--------TQLPPGTHTISVTEEERDAIERV 365
>gi|367011717|ref|XP_003680359.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
gi|359748018|emb|CCE91148.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
Length = 368
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 191/420 (45%), Gaps = 82/420 (19%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I K K +++ +V D K+++ + + Q LIY GKVL+D +L
Sbjct: 1 MVSITFKDFKKEKIPLDLDLSSSVLDAKVQLAQKKECE---EGQIKLIYSGKVLQDSKSL 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
+E+ + + V+ M++K +T PQS +T+ P+S
Sbjct: 58 QESGLKDGDQVIFMISK--------KKSTTTTVTEPQSK------------ETSAPVSQS 97
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P P + PA+ + S+T++ G V G A+++I++MG ++R+ V
Sbjct: 98 PAP-QSETPAAETQQEASSTTDPG--------FVVGAQRNEAVERIMEMG---YEREQVD 145
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RALRAA+NNP+RAVEYL GIPE + Q + Q + P +G
Sbjct: 146 RALRAAFNNPDRAVEYLLMGIPENLQQQQQPQQQAEQPQEQEEEQQETESNTEP---TGE 202
Query: 241 NANPLDLFPQG---------------LPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANP 285
A DLF Q G+ G D L LR +V NP
Sbjct: 203 AAGE-DLFAQAAQRGGAPGGETGGEGTTGGPPGSIGLTMEDLL-------ALRQVVSGNP 254
Query: 286 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS------ 339
+ L P+L+ L + PQL I + F+ ++ E V GE NL D + G+ +
Sbjct: 255 EALAPLLESLSNRFPQLREQIVANPEVFVSMLLEAV--GE-NLEDAMTGMDEGTEGGAVA 311
Query: 340 ---------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
++V+ + +AI RL +GF+RA+V++V+FAC KNEE+AAN L +EF D
Sbjct: 312 AGQQGEEVNVEVSESDEQAIARLCELGFERALVMQVYFACGKNEEIAANMLF---NEFGD 368
>gi|323305178|gb|EGA58925.1| Rad23p [Saccharomyces cerevisiae FostersB]
Length = 401
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 123/418 (29%), Positives = 186/418 (44%), Gaps = 65/418 (15%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+ + K K+ S +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT--APQTAVPIS 118
E + + VV M+++ K T+ T P AP+S A TP +T +P T +
Sbjct: 58 SECGLKDGDQVVFMVSQKKST----KTKVTEPPIAPES-ATTPGRENSTEASPSTDASAA 112
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P ++ T + G V G I++I++MG + R+
Sbjct: 113 PAATAPEGSQPQEEQTATTERTESASTPG-----FVVGTERNETIERIMEMG---YQREE 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V RALRAA+NNP+RAVEYL GIPE QP + A T QPA
Sbjct: 165 VERALRAAFNNPDRAVEYLLMGIPENLR-QPEPQQQTAAAAEQPSTAATTAEQPAED--- 220
Query: 239 GPNANPLDLFPQGLP--DVGSGAAG--AGSLDFLRNSP---------QFQVLRAMVQANP 285
DLF Q + SGA G G+ D + P LR +V NP
Sbjct: 221 -------DLFAQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNP 273
Query: 286 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--------QGGEGNL--------G 329
+ L P+L+ + + PQL I + F+ ++ E V +G + + G
Sbjct: 274 EALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTG 333
Query: 330 DQLAGLMPQ-----SIQV--TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANY 380
+ A + Q S QV TPE+ +AI RL +GF+R +V++V+FAC+K + Y
Sbjct: 334 EAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKKRRSCSKY 391
>gi|195108433|ref|XP_001998797.1| GI24165 [Drosophila mojavensis]
gi|193915391|gb|EDW14258.1| GI24165 [Drosophila mojavensis]
Length = 299
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/387 (27%), Positives = 167/387 (43%), Gaps = 92/387 (23%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDV-YPAAQQMLIYQGKVLKDDTTL 60
MK+ ++TL + +E+K +D + +K V+ ++ P LIY G++++DD +
Sbjct: 1 MKLTIRTLDQKTISLELK-DDKQNVLHLKQRLVELPEISQPVDSLQLIYSGRIMQDDRPI 59
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + E+ F+V+M K+ + A K +S P T P E
Sbjct: 60 SEYNIMEDRFIVLMTKKSVNAVEPPKKNTEAEQK--ESQQPKSGNTEQLRP-------AE 110
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P P P+ AP Q++ D+ +D V
Sbjct: 111 P-PRPSVAPDE--------------------------------QRVRDLVLMGYDEPDVR 137
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRA++N+PERA+EYL +GIP T +P Q T +
Sbjct: 138 AALRASFNHPERAIEYLITGIP---------------------THVPAVNQ----TQTQT 172
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
NAN D A L++L P F +R +++ NP+LL+ +L L + +P
Sbjct: 173 NANA--------ADANLIGETAERLNYLATDPHFAHVRDLIRQNPELLELVLTHLRESDP 224
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDR 360
I+ +Q +F+ ++N P MP + + EE A+ERL A+GFDR
Sbjct: 225 AAFEAIRNNQEEFISMLNAP---------------MPMTASLNTEEEAAVERLMALGFDR 269
Query: 361 AIVLEVFFACNKNEELAANYLLDHMHE 387
+V+ V+ AC+KNEELAA+ L E
Sbjct: 270 DVVVPVYLACDKNEELAADILFRQTDE 296
>gi|254583708|ref|XP_002497422.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
gi|238940315|emb|CAR28489.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
Length = 384
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 120/419 (28%), Positives = 182/419 (43%), Gaps = 73/419 (17%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I K K +E+ P +V D K+++ T + + +Q LIY GKVL+D L
Sbjct: 1 MINIIFKDFKKEKISLELDPSSSVKDAKVRLATEKSCE---ESQIKLIYSGKVLQDAKNL 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKA--PQSSAPTPAATPATAPQTAVPIS 118
+E+ + + V+ M++K K T + + A P SA T T A +
Sbjct: 58 QESGLKDGDQVIFMISKKKAATPSAAAATPASASVTEPSQSATTNTETQAAGSAAETTAT 117
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
P+ T AP S + V G + +I++MG ++RD
Sbjct: 118 APAQPSTTQAPVSTP------------------DFVVGQQRNETVDRIMEMG---YERDQ 156
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V RALRAA+NNP+RAVEYL GIPE + A A + + + P ++
Sbjct: 157 VERALRAAFNNPDRAVEYLLMGIPENLQR---AGARQQQPEQQAQQESQPQQESQPQQAT 213
Query: 239 GPNANPLDLFPQGLPDVGS-------------------GAAGAGSLDFLRNSPQFQVLRA 279
P DLF Q G+ G D L LR
Sbjct: 214 EPQEGE-DLFAQAEQRTQGNTASAEGAAAADGAQGGVPGSIGLTMEDLL-------ALRQ 265
Query: 280 MVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGL---- 335
+V NP+ L P+L+ L + PQL I + F+ ++ E V G+ NL D + L
Sbjct: 266 VVSGNPEALAPLLESLSSRYPQLREQIMSNPEVFVSMLLEAV--GD-NLQDAMTDLETGD 322
Query: 336 ----------MPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+++T + +AI RL +GF+RA+ ++V+FAC KNEE+AAN LL+
Sbjct: 323 DPEGAAAAAEGAFQVELTESDEQAITRLCELGFERAVAIQVYFACGKNEEIAANMLLND 381
>gi|212645665|ref|NP_496488.2| Protein RAD-23 [Caenorhabditis elegans]
gi|194686136|emb|CAA93780.2| Protein RAD-23 [Caenorhabditis elegans]
Length = 323
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 113/391 (28%), Positives = 182/391 (46%), Gaps = 74/391 (18%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
++ + +TL +F++E+ + T+ +VK + + +G D P Q+ LIY GK+L D +
Sbjct: 2 VLSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQK-LIYNGKILDDSVKV 60
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + FVV+ML+ KR E AP S+ T A A A +
Sbjct: 61 GEVGFDSSKFVVVMLS--KRKVTE---------VAPSSTVATAAEPVPVAAAPASNPAPA 109
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
AP A + + + E+ +L + G +DR+ +
Sbjct: 110 ADVAPEAAAPAEAEALTDEQEEN----------------------VLAITGMGYDREQTI 147
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRAA+ NP+RAVE+L +G+P+ A Q P
Sbjct: 148 AALRAAFWNPDRAVEFLLNGLPDDAADQE------------------------------P 177
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
+ P Q + +V G L+ L N PQ +RA++Q NP++L +LQ+L NP
Sbjct: 178 DLGP----EQNIDNVDED--GNDDLNMLANMPQLAEIRALIQQNPEMLAAVLQQLAAVNP 231
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS--IQVTPEEREAIERLEAMGF 358
+LV+ IQ +Q F+ L+N QG G+ P+ I ++PEE AIER++A+
Sbjct: 232 RLVQTIQNNQQAFMDLLNGGAQGAGAAAGNAPERNTPRRHVIHLSPEEAAAIERIKAIVV 291
Query: 359 D--RAIVLEVFFACNKNEELAANYLLDHMHE 387
+ A+V+E +FAC+KNEE A N++ ++ E
Sbjct: 292 NAPEAVVVEAYFACDKNEEAAINFIFSNLDE 322
>gi|380094252|emb|CCC08469.1| putative RAD23 protein [Sordaria macrospora k-hell]
Length = 423
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 127/249 (51%), Gaps = 37/249 (14%)
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA---------RAPGN 216
I +M ++R + A+RAAYNNPERAVEYL +GIP + Q + AP
Sbjct: 183 IANMEAMGFERSQIDAAMRAAYNNPERAVEYLLNGIPANLQQQAASSRQPSAAPAAAPAA 242
Query: 217 GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA-------------- 262
AA + G + P++LF +G+ A G
Sbjct: 243 APAAAPAAAPAAQAASPAAAAGGDDEGPVNLFDLA-AQLGNSAGGRGARGAEGAGAEAAG 301
Query: 263 -GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV 321
G+LDFLRN+ QFQ +R +VQ PQ+L+P+LQ+LG NPQL ++I ++ FL
Sbjct: 302 LGNLDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL------- 354
Query: 322 QGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYL 381
NL + I VT EER+AIERL +GF + ++ +FAC+K+EELAAN+L
Sbjct: 355 -----NLLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEELAANFL 409
Query: 382 LDHMHEFED 390
D E +D
Sbjct: 410 FDQGPEEDD 418
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 21/109 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +E++P +T+ VK KI +G + Q LIY GK+LKD+ T+E
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETIAKVKAKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATA 110
K+ E FVV ++ K P+++AP PA + ++A
Sbjct: 58 SYKIEEKGFVVCVVNK------------------PKTTAPKPAESSSSA 88
>gi|444526365|gb|ELV14316.1| UV excision repair protein RAD23 like protein A [Tupaia chinensis]
Length = 261
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 137/265 (51%), Gaps = 81/265 (30%)
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY--SGIPEQAE 206
+A + V G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL S + EQ
Sbjct: 54 SAPSTVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTESQVSEQ-- 108
Query: 207 VQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLD 266
P T +G N L+
Sbjct: 109 ---------------------------PATEAGDNP----------------------LE 119
Query: 267 FLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP------ 320
FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++NEP
Sbjct: 120 FLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELAD 179
Query: 321 -----VQGGEGNLGDQLAGLMPQSIQVTPEEREAIER----------LEAMGFDRAIVLE 365
V+G G +G++ + IQVTP+E+EAIER L+A+GF ++V++
Sbjct: 180 ISDVDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERGRGPAGRAPSLKALGFPESLVIQ 237
Query: 366 VFFACNKNEELAANYLLDHMHEFED 390
+FAC KNE LAAN+LL F+D
Sbjct: 238 AYFACEKNENLAANFLLS--QNFDD 260
>gi|195400082|ref|XP_002058647.1| GJ14198 [Drosophila virilis]
gi|194142207|gb|EDW58615.1| GJ14198 [Drosophila virilis]
Length = 290
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/382 (25%), Positives = 169/382 (44%), Gaps = 101/382 (26%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVY-PAAQQMLIYQGKVLKDDTTL 60
MK+ ++TL + +E++ +D +++K VQ ++ P LIY G++++DD L
Sbjct: 1 MKLSIRTLDQKTISLELQ-DDKQKVIQLKQRLVQLPEITQPVESLQLIYGGRIMQDDLPL 59
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
+ + E+ F+V+M T+ +A + P+S P P Q A P
Sbjct: 60 ADYNIKEDRFIVLM------------TKRSANVQEPESE-PRQEHHPEQIVQPAEP---- 102
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P P+ TP E ++ ++ MG ++ V
Sbjct: 103 PRPSVTPD-------------------------------EQRVRDLMLMG---YEEQDVR 128
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
AL A++N+PERA+EYL +GIP + A N T P + + ++ +
Sbjct: 129 AALSASFNHPERAIEYLITGIP-----------SSHVTAMNGTTTTSSPAESSVISET-- 175
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
A L++L P+F +R +++ NP+LL+ +L L + +P
Sbjct: 176 ---------------------AEHLNYLATDPRFAHVRDLIRQNPELLELVLTHLRESDP 214
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDR 360
I+ +Q +F+ ++NEP G+L EE A+ERL A+GFDR
Sbjct: 215 AAFEAIRSNQEEFISMLNEPTAHLTGSLSH--------------EEEAAVERLMALGFDR 260
Query: 361 AIVLEVFFACNKNEELAANYLL 382
+VL ++ AC+KNEEL A+ L
Sbjct: 261 DVVLPIYLACDKNEELTADILF 282
>gi|443919043|gb|ELU39338.1| UBA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 886
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 140/277 (50%), Gaps = 43/277 (15%)
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
G +G +S VAG L AI+ ++ MG ++R+ ++RALRA++NNP+RAVEYL +GIPE
Sbjct: 158 GAFGDTSS-FVAGGALNSAIENMMGMG---FEREQIMRALRASFNNPDRAVEYLLTGIPE 213
Query: 204 Q--AEVQPVARAPGNG-------------QAANSPTQMPQPTQPAPVTSSGPNANPLDLF 248
AE P P +G A +P P + G + PL+LF
Sbjct: 214 HLLAETAP----PASGGPAATPAASNPAPAAPTTPAAAPAARSTTTSGTGGGASGPLNLF 269
Query: 249 PQGLPDVGSG-----------------AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPM 291
Q G +L+ L+NSP FQ ++ NP LLQP+
Sbjct: 270 AQAAAQSGGNPSTGAGADAGEGAGGGAGINPAALESLQNSPMFQNTLGAIRENPALLQPL 329
Query: 292 LQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP---QSIQVTPEERE 348
+Q+L + NP + + + + +++ + + GD G +P I +T EE E
Sbjct: 330 IQQLAQSNPAIAQQLTSNPELLYQILGGLGGDDQDDDGDGEGGGIPPGAHVINITQEEAE 389
Query: 349 AIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
AI RLEA+GF R + +E +F C+KNEELAANYL +++
Sbjct: 390 AIARLEALGFPRQLAIEAYFTCDKNEELAANYLFENV 426
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 36/197 (18%)
Query: 12 TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDD-TTLEENKVAENSF 70
T+ +V++ P+DT+ +++ K+ + + A L+Y G+ L DD T+E + EN +
Sbjct: 514 TTPEVDIDPQDTILNLREKVGILAE---HRANILKLLYAGRTLADDQKTIESLNLKENHW 570
Query: 71 VVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPA 130
+ I L + + +T+ T P +S PT AP
Sbjct: 571 IFIQLLQTHEFVS--AQANTSATSEPTASLPT-----------------------LNAPE 605
Query: 131 SASVSSVSATSESGVYGHAASNLVAGNNLEGAI------QQIL-DMGGGTWDRDTVVRAL 183
+ + S+ H + + + G+ G+ QQI+ D+ + D+D +V+AL
Sbjct: 606 HPREGGIDSKSDEIQQIHTSPHGIKGSGYTGSFTARATPQQIVKDLVYMSSDQDELVQAL 665
Query: 184 RAAYNNPERAVEYLYSG 200
+A++ + ERA + +G
Sbjct: 666 KASFRDSERATKRAATG 682
>gi|71033501|ref|XP_766392.1| DNA repair protein Rad23 [Theileria parva strain Muguga]
gi|68353349|gb|EAN34109.1| DNA repair protein rad23, putative [Theileria parva]
Length = 326
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 125/402 (31%), Positives = 198/402 (49%), Gaps = 89/402 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQ---MLIYQGKVLKDDT 58
M + VKTLK DV+V +V D+ K+ ++ +P Q LI+ GK+LK +
Sbjct: 1 MNLKVKTLKNVQVDVDVPDTASVEDLMNKV-----AESFPNMQAESLKLIHAGKILKKEL 55
Query: 59 TLEENKVAENSFVVIMLT-------KNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAP 111
L++ ++ VI+++ K++ P + S+ +T +KAPQ P+P P
Sbjct: 56 LLKDYSDIKDGDKVIVISSKTPDPSKHQDPNSQPSSTTTPTSKAPQ---PSPLDNSPHQP 112
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+ +S + Y +S LV G+ LE +I +I +MG
Sbjct: 113 SSGHNVSQQ------------------------TYETVSSKLVMGSELEQSINRICEMG- 147
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAPGNGQAANSPTQMPQPT 230
++R V RA+ AA+NNP+RAVE+L +G IP
Sbjct: 148 --FERPLVERAMAAAFNNPDRAVEFLSTGNIP---------------------------- 177
Query: 231 QPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQP 290
S+ PN +D P+ G + G L +++ P F+ L VQ++PQLLQ
Sbjct: 178 -----VSNMPN---IDHQNVTAPEHGH-SGGEDVLQMIQSHPMFEQLSQAVQSDPQLLQQ 228
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGL--MPQSIQVTPEERE 348
+L+ LG+ +P+L++ I + Q +F+ L+N G G D + P I +TP E E
Sbjct: 229 LLESLGQTHPELLQTIIQRQDEFMELLN----SGAGAEADPYSNTEHNPNIISLTPVEME 284
Query: 349 AIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+IERLE +GF R V+E + AC+KNEELAANYLL++ H+F++
Sbjct: 285 SIERLEGLGFSRPAVIEAYLACDKNEELAANYLLENSHDFQE 326
>gi|195604818|gb|ACG24239.1| hypothetical protein [Zea mays]
Length = 98
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 77/90 (85%), Gaps = 3/90 (3%)
Query: 303 VRLIQEHQADFLRLINEPVQGGEGN--LGDQLAGLMPQSIQVTPEEREAIERLEAMGFDR 360
++LIQE+QA+F+RLI+EP++G E N + DQ+A ++I VTPEE EAI RLE MGFDR
Sbjct: 1 MQLIQENQAEFMRLISEPLEGDEENEMMLDQMAD-ATETIAVTPEENEAILRLEGMGFDR 59
Query: 361 AIVLEVFFACNKNEELAANYLLDHMHEFED 390
A+VLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 60 ALVLEVFFACNKNEQLAANYLLDHMHEFDN 89
>gi|345327424|ref|XP_003431168.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 182
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 92/131 (70%), Gaps = 10/131 (7%)
Query: 261 GAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP 320
G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEP
Sbjct: 46 GGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 105
Query: 321 VQ---------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACN 371
VQ G G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC
Sbjct: 106 VQESGGQGGGGSGSGGVAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 164
Query: 372 KNEELAANYLL 382
KNE LAAN+LL
Sbjct: 165 KNENLAANFLL 175
>gi|340522496|gb|EGR52729.1| hypothetical protein TRIREDRAFT_102581 [Trichoderma reesei QM6a]
Length = 341
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 179/398 (44%), Gaps = 81/398 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++V+P D K+LKDD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTD-----------------------------KILKDDDTVQ 31
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E FVV M+ K K + + P +A + A P Q+A +
Sbjct: 32 SYNIEEKGFVVCMVNKPKPAPAAAAAAAPPPATPAPPAAASTPAAPPAPAQSATQAAAP- 90
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ + S + SG L G+ AI + MG ++R +
Sbjct: 91 --------PATPTPNRSTGTPSG--------LAMGSERAEAIANMEAMG---FERTQIEA 131
Query: 182 ALRAAYNNPERAVEYLYSGIPEQ-------------AEVQPVARAPGNGQAANSPTQMPQ 228
A+RAA+NNP+RAVEYL +GIPE A G+ + + +
Sbjct: 132 AMRAAFNNPDRAVEYLLTGIPESIQQEQQQQRANPPQAAPAAAAPTGDDDGSVNLFDLAA 191
Query: 229 PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
+ AP + P A QG G+LDFLR++ QFQ LR +VQ PQ+L
Sbjct: 192 QRRGAPASGGSPAAATAAAAAQG---------DLGNLDFLRHNAQFQQLRQVVQQQPQML 242
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEE 346
+P+LQ+LG NPQL +LI + FL+L+ E D L P Q+I VT EE
Sbjct: 243 EPILQQLGAGNPQLAQLIASNPDQFLQLLGEDA--------DDDVPLPPGAQAISVTEEE 294
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
R+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 295 RDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 332
>gi|66808013|ref|XP_637729.1| repC-binding protein A [Dictyostelium discoideum AX4]
gi|74853451|sp|Q54LV1.1|RAD23_DICDI RecName: Full=UV excision repair protein RAD23 homolog; AltName:
Full=repC-binding protein A
gi|60466140|gb|EAL64203.1| repC-binding protein A [Dictyostelium discoideum AX4]
Length = 342
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 114/235 (48%), Gaps = 52/235 (22%)
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
+S+ G LE I+ I DMG + RD V+RALR +NN ERA+EYL SG
Sbjct: 154 SSDFATGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVSG--------- 201
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
N AAN P + NP + LR
Sbjct: 202 ------NIPAANDPEDEEEMEGGGGSGD-----NPFEA--------------------LR 230
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG 329
N P F +LR + NP ++ +LQ+L + NP LVR IQE+ +F+RL G
Sbjct: 231 NHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLFQGDGNPG----- 285
Query: 330 DQLAGLMPQSIQVTPEEREAIERLEAM-GFDRAIVLEVFFACNKNEELAANYLLD 383
++QVT EE EAI+RL+A+ G D++ V+E +FAC+KNEEL A+YL +
Sbjct: 286 ---GNPGQFTLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 337
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +K + + EV + TV ++K I + Q LIY GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 62 ENKVAENSFVVIMLTK 77
+ ++ F+V+M+ K
Sbjct: 58 SYNITDSGFIVMMIKK 73
>gi|389609121|dbj|BAM18172.1| UV excision repair protein rad23 [Papilio xuthus]
Length = 254
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 90/133 (67%), Gaps = 9/133 (6%)
Query: 265 LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG 324
L FLR+ PQFQ +RA++Q NP LL +LQ++G+ NP L++ I +HQ F+R++NEPV
Sbjct: 124 LAFLRDQPQFQQMRAVIQQNPSLLNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPVNPP 183
Query: 325 EGNLGDQLAGL---MPQS----IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELA 377
+ +G MPQ +QV+P++REAIERL+A+GF +V++ +FAC KNE LA
Sbjct: 184 APGAAVEDSGAENPMPQPPPSVVQVSPQDREAIERLKALGFPEHMVIQAYFACEKNENLA 243
Query: 378 ANYLLDHMHEFED 390
AN+LL F+D
Sbjct: 244 ANFLLS--QNFDD 254
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Query: 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
+ E +Q I+DMG ++R V +ALRA+++N ERAVEYL +GIP
Sbjct: 65 DFESTVQSIMDMG---YNRQQVEQALRASFSNRERAVEYLITGIP 106
>gi|221481235|gb|EEE19636.1| UV excision repair protein rad23, putative [Toxoplasma gondii GT1]
Length = 348
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 173/377 (45%), Gaps = 63/377 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ ++TL ++EV E+TV +VK K+E Q PAA+Q L++ GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 62 E-NKVAENSFVVIMLTK-----------------------NKRPTGEGSTRSTAPTKAPQ 97
+ + + EN +V+M+TK + T GS+ + + +
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 98 SS-APTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAG 156
S+ + TP + + + P + PA AS+ S+ ATSE A S L G
Sbjct: 119 SAKSETPGGSGNASGNSGGPAN--------PAHASSPSSAPDATSEGLSRAAAESALFTG 170
Query: 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN 216
LE + ++ MG + R A+RAA+NNP+RAVEYL +G+P + V+ G
Sbjct: 171 PQLEETLTHLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGMPPE-----VSAMLGG 222
Query: 217 GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQV 276
A P + + NPL GA LR+ P F
Sbjct: 223 DSAETQEAHGDVPPEEGDAEGDEDDENPL---------------GA-----LRHHPAFNQ 262
Query: 277 LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLM 336
+R MVQANP +L +LQ +G NPQL+ LI ++Q FL ++ GE
Sbjct: 263 IRQMVQANPAMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSDQGEGETGAAGTGGFAA 322
Query: 337 PQSIQVTPEEREAIERL 353
P IQ+T EE EA++R+
Sbjct: 323 PGIIQMTAEEMEALQRV 339
>gi|336268454|ref|XP_003348992.1| RAD23 protein [Sordaria macrospora k-hell]
Length = 249
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 127/249 (51%), Gaps = 37/249 (14%)
Query: 166 ILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA---------RAPGN 216
I +M ++R + A+RAAYNNPERAVEYL +GIP + Q + AP
Sbjct: 9 IANMEAMGFERSQIDAAMRAAYNNPERAVEYLLNGIPANLQQQAASSRQPSAAPAAAPAA 68
Query: 217 GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA-------------- 262
AA + G + P++LF +G+ A G
Sbjct: 69 APAAAPAAAPAAQAASPAAAAGGDDEGPVNLFDLA-AQLGNSAGGRGARGAEGAGAEAAG 127
Query: 263 -GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV 321
G+LDFLRN+ QFQ +R +VQ PQ+L+P+LQ+LG NPQL ++I ++ FL
Sbjct: 128 LGNLDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL------- 180
Query: 322 QGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYL 381
NL + I VT EER+AIERL +GF + ++ +FAC+K+EELAAN+L
Sbjct: 181 -----NLLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEELAANFL 235
Query: 382 LDHMHEFED 390
D E +D
Sbjct: 236 FDQGPEEDD 244
>gi|45198876|ref|NP_985905.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|44984905|gb|AAS53729.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|374109136|gb|AEY98042.1| FAFR358Wp [Ashbya gossypii FDAG1]
Length = 413
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 116/434 (26%), Positives = 189/434 (43%), Gaps = 81/434 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
+ I K K +++ P T+ + K + + D +Q +I+ GKVL+D TLE
Sbjct: 3 ITIHFKDFKKERLPLQLSPSATIAEAKQMLARAKQCD---ESQLKMIFSGKVLQDGNTLE 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ + V+ M++K K T + S P PA+ P+ PQ+ E
Sbjct: 60 GCKLKDGDQVIFMISKKKAET--------------RVSEPEPASEPSGGPQSEASTGLET 105
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P + A V S G AS V G+ +++I++MG +DR V
Sbjct: 106 VTTPGVSAA------VDPESTGAAVGSGAS-FVTGSARSQTVERIMEMG---YDRAQVEM 155
Query: 182 ALRAAYNNPERAVEYLYSGIPE-----------QAEVQPVARAPGNGQAANSPTQMPQPT 230
ALRAA+NNP+RAVEYL +GIPE Q+ + P G A + T+ T
Sbjct: 156 ALRAAFNNPDRAVEYLLTGIPEHLQNSSAFSARQSASVAASGVPETGATAQTGTETETGT 215
Query: 231 QPAPVTS-SGPNANPLDLFPQGLPDVGS-----GAAGAGSLDFLRNSPQFQV-------- 276
+ + + + DLF Q VGS GA + ++S Q
Sbjct: 216 GTGTASEVNDEHVHEDDLFAQAAA-VGSENPTTGADATTTGTVSQDSSPLQTIGLTFEDL 274
Query: 277 --LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG----------- 323
LR ++ +P+ L P+L+ L ++ P+L I + F+ ++ + V G
Sbjct: 275 VQLRGVINGDPEALPPLLESLSERYPELREQIMSNPEMFISMLLQAVGGALPSEALDDAS 334
Query: 324 -----------GEGNLG----DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFF 368
G+G+ D A + + ++ E+ IERL +GF+R +V++++
Sbjct: 335 AYQADSEAIAEGDGSTASANQDTAADAQNELLSLSEEDLTTIERLCELGFERDLVIQIYV 394
Query: 369 ACNKNEELAANYLL 382
AC+KNEE+ AN L
Sbjct: 395 ACDKNEEVTANMLF 408
>gi|366995773|ref|XP_003677650.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
gi|342303519|emb|CCC71299.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
Length = 392
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 193/415 (46%), Gaps = 61/415 (14%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ I K K + ++ +TV D K ++ + + +Q LIY GKVL+D TL
Sbjct: 1 MINITFKDFKKEKIPLALESTNTVLDAKTQLAQNKSCE---ESQIKLIYSGKVLQDAKTL 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E+ + + V+ M+ S + + TK ++ + T A P T +A E
Sbjct: 58 EDCGLKDGDQVIFMI----------SKKKSTTTKVTEAPSSTTATAPTTTTNSATNTPAE 107
Query: 121 PTPAP---TPAPASASVSSVSATSESGVYGHAAS-NLVAGNNLEGAIQQILDMGGGTWDR 176
+PA TPA A+ + AT+ SG A S V G+ + +++I++MG ++R
Sbjct: 108 VSPAAASETPAQLPATTEAAPATTSSGETSSAGSAGFVVGSQRDQTVERIMEMG---YER 164
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
+ V ALRAA+NNP+RAVEYL GIPE + ARA AA T P TQ T
Sbjct: 165 EQVESALRAAFNNPDRAVEYLLMGIPENLQ----ARA-----AAPQETAAPSITQDVTTT 215
Query: 237 SSGPNANPL--DLFPQGLPDVGSGAAGAGSLDFLRNSP---------QFQVLRAMVQANP 285
++ P DLF Q +G G + + P LR ++ NP
Sbjct: 216 TASTEDAPAEEDLFAQAAQGSNTGPNTEGESE--HHGPPGSIGLTVQDLLSLRQVISGNP 273
Query: 286 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV------------------QGGEGN 327
+ L +L+ L + P L + + F+ ++ E V
Sbjct: 274 EALTSLLESLSVRYPNLREQMMNNPQAFISMLLEAVGDNLQGLEGLEGLGEEGHIEEGEL 333
Query: 328 LGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+ A +P +++TPE+ +AI RL +GF+R++V++V+FAC KNEE+AAN L
Sbjct: 334 EEGEEAHPIPH-VELTPEDEQAISRLCELGFERSLVIQVYFACEKNEEVAANMLF 387
>gi|218190702|gb|EEC73129.1| hypothetical protein OsI_07141 [Oryza sativa Indica Group]
Length = 242
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 63/73 (86%)
Query: 141 SESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200
+E+ +YG AASNLVAG+NLEG +Q IL+MGGG WDRDTV+RAL AAYNNPERAVEYLY+G
Sbjct: 156 TEADIYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTG 215
Query: 201 IPEQAEVQPVARA 213
+PEQAE V +A
Sbjct: 216 LPEQAEASAVVQA 228
>gi|340505565|gb|EGR31882.1| uv excision repair protein, putative [Ichthyophthirius multifiliis]
Length = 395
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 118/241 (48%), Gaps = 37/241 (15%)
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
AS++V G LE I I MG ++R V++AL+AAYNNPERAVEYL SG
Sbjct: 122 ASDMVMGAELEAKIADIESMG---FERSKVIQALKAAYNNPERAVEYLLSG--------- 169
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
P++PA + G L L
Sbjct: 170 -----------------HIPSRPA-FEQPPQQPQQPQQGGVLGEEGVGNLGGLEELQQLA 211
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG 329
+PQFQ + ++ NP LLQP++ +L + NPQL L+Q++ FL+L+ + G +
Sbjct: 212 QNPQFQQIAMAIRQNPALLQPIMLQLAQSNPQLATLLQQNPQAFLQLLMQATGGEQCIFF 271
Query: 330 DQLAGLM-------PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
D + + +IQVTPEE+ I+ + ++GFD+ LE + +C+KN+ELA NYL
Sbjct: 272 DNVILIFFFFVEVSRNAIQVTPEEKADIDEIVSLGFDKNDALEAYISCDKNKELAINYLF 331
Query: 383 D 383
D
Sbjct: 332 D 332
>gi|242079217|ref|XP_002444377.1| hypothetical protein SORBIDRAFT_07g020960 [Sorghum bicolor]
gi|241940727|gb|EES13872.1| hypothetical protein SORBIDRAFT_07g020960 [Sorghum bicolor]
Length = 137
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 71/91 (78%), Gaps = 1/91 (1%)
Query: 296 GKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGL-MPQSIQVTPEEREAIERLE 354
G+QN Q+ +LIQE+QA+FLR+IN+P E +L DQ G M ++I V PEE EAI+RLE
Sbjct: 45 GEQNLQITQLIQENQAEFLRVINDPAGRAEESLPDQFGGAGMHRTIAVKPEENEAIQRLE 104
Query: 355 AMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
M FDR +VLEVFFACNK+E LAANYLLDHM
Sbjct: 105 QMTFDRDLVLEVFFACNKDEHLAANYLLDHM 135
>gi|68466693|ref|XP_722542.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
gi|68466980|ref|XP_722405.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444377|gb|EAL03652.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444523|gb|EAL03797.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
Length = 348
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 129/277 (46%), Gaps = 43/277 (15%)
Query: 149 AASN---LVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ- 204
AASN G+ E +IQ I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 205 ----AEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAA 260
A QP A Q T + +LF A
Sbjct: 132 QHPVAPAQPPATGTAPAQQTEGNTSESGQQGEDEEHEGDESTQHENLFEAAAAAAAGAGA 191
Query: 261 GA-------------GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQ 307
G G + L + Q Q+LRA +Q+NP+L+QP+L++L NPQ+ LIQ
Sbjct: 192 GGAGSGAGAGAGSAEGDIGGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQ 251
Query: 308 EHQADFLRLINEPVQGGEGNLGDQLAGLMPQS-------------------IQVTPEERE 348
+ F+R+ G +LG + ++ IQ++ ++
Sbjct: 252 QDPEAFIRMFLSGAPGSGNDLGFEFEDESGETGAGGAAAAATGEDEQGTIRIQLSEQDNN 311
Query: 349 AIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
AI RL +GF+R IV++V+ AC+KNEE+AA+ L M
Sbjct: 312 AINRLCELGFERDIVIQVYLACDKNEEVAADILFRDM 348
>gi|238881986|gb|EEQ45624.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 348
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 129/277 (46%), Gaps = 43/277 (15%)
Query: 149 AASN---LVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ- 204
AASN G+ E +IQ I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 205 ----AEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAA 260
A QP A Q T + +LF A
Sbjct: 132 QHPVAPAQPPATGTAPAQQTEGNTSESGQQGEDEEHEGDESTQHENLFEAAAAAAAGAGA 191
Query: 261 GA-------------GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQ 307
G G + L + Q Q+LRA +Q+NP+L+QP+L++L NPQ+ LIQ
Sbjct: 192 GGAGSGAGAGAGSAEGDIGGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQ 251
Query: 308 EHQADFLRLINEPVQGGEGNLGDQLAGLMPQS-------------------IQVTPEERE 348
+ F+R+ G +LG + ++ IQ++ ++
Sbjct: 252 QDPEAFIRMFLSGAPGSGNDLGFEFEDESGETGAGGAAAAATGEDEQGTIRIQLSEQDNN 311
Query: 349 AIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
AI RL +GF+R IV++V+ AC+KNEE+AA+ L M
Sbjct: 312 AINRLCELGFERDIVIQVYLACDKNEEVAADILFRDM 348
>gi|297721185|ref|NP_001172955.1| Os02g0465112 [Oryza sativa Japonica Group]
gi|255670888|dbj|BAH91684.1| Os02g0465112, partial [Oryza sativa Japonica Group]
Length = 92
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%)
Query: 138 SATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYL 197
S ++E+ +YG AASNLVAG+NLEG +Q IL+MGGG WDRDTV+RAL AAYNNPERAVEYL
Sbjct: 3 STSTEADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYL 62
Query: 198 YSGIPEQAEVQPVARA 213
Y+G+P QAE V +A
Sbjct: 63 YTGLPGQAEASAVVQA 78
>gi|326480573|gb|EGE04583.1| nucleotide excision repair protein RAD23 [Trichophyton equinum CBS
127.97]
Length = 255
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 104/180 (57%), Gaps = 31/180 (17%)
Query: 213 APGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSP 272
AP AA S T P P+P +G A L GSL+FLRN+P
Sbjct: 103 APSRANAAASET----PATPSPAGGAGETAGSL-----------------GSLEFLRNNP 141
Query: 273 QFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL 332
FQ LR +VQ PQ+L+P+LQ++G NPQL +LI ++Q FL+L++E V D
Sbjct: 142 HFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDV--------DDE 193
Query: 333 AGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
L P QSI VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E ED
Sbjct: 194 TQLPPGTQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENED 253
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ + LK F ++ +P D + DVK KI T +G +PA+QQ LIY GK+L+DD T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 62 ENKVAENSFVVIML 75
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|47496878|dbj|BAD19842.1| RAD23 protein-like [Oryza sativa Japonica Group]
Length = 110
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 62/73 (84%)
Query: 141 SESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200
+E+ +YG AASNLVAG+NLEG +Q IL+MGGG WDRDTV+RAL AAYNNPERAVEYLY+G
Sbjct: 24 TEADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTG 83
Query: 201 IPEQAEVQPVARA 213
+P QAE V +A
Sbjct: 84 LPGQAEASAVVQA 96
>gi|6688552|emb|CAB65692.1| Rad23 Protein [Solanum lycopersicum var. cerasiforme]
Length = 65
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 60/65 (92%)
Query: 326 GNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
GN+ Q AG +PQ++ VTPEEREAIERLEAMGFDRA+VLEV+FACNKNEELAANYLLDH+
Sbjct: 1 GNVLGQTAGAIPQAVTVTPEEREAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHL 60
Query: 386 HEFED 390
HEF++
Sbjct: 61 HEFDE 65
>gi|432871920|ref|XP_004072043.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 421
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 116/205 (56%), Gaps = 7/205 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ + +E+ PE TV +K KIE +G D +P + Q LIY GK+L+DDT ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ K+ E +FVV+M++K K + AP Q S T A P + P A + P
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAATTSAPAPEAPKPPAQDSGSTSTAAPPSNPPAAPTPAAVP 120
Query: 122 TP---APTPAPASASVSSVSATSESGVYG-HAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
P A A A+ A+S G G A+S LV G E + +I+ MG ++R+
Sbjct: 121 IPPEEAKQEQSAEATEPQQPASSSGGNQGLDASSALVTGAEYEAMLTEIMSMG---YERE 177
Query: 178 TVVRALRAAYNNPERAVEYLYSGIP 202
VV ALRA++NNP RAVEYL +GIP
Sbjct: 178 RVVAALRASFNNPHRAVEYLLTGIP 202
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 259 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRL 305
++G L FLR PQF +R +Q NP LL +LQ+LG++NPQL+++
Sbjct: 351 SSGENPLAFLRTQPQFLHMRQAIQQNPALLPTLLQQLGRENPQLLQV 397
>gi|349803947|gb|AEQ17446.1| putative rad23b [Hymenochirus curtipes]
Length = 286
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 115/224 (51%), Gaps = 17/224 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ +F +++ E+TV +K KIE +G + +P A Q LIY GK+L DDT
Sbjct: 1 MQITLKTLQQQTFKIDIDSEETVKALKEKIELEKGKEAFPVAGQKLIYAGKILNDDTATA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
A + + P T P A +S PT P +T
Sbjct: 61 APAPASPPLTYTPIARQNAP-----VLPTVPAPAVPTSEPTTTTAPKEEEKTD------- 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+P T +P+S S S +S ++ A S LV G + E + +I+ MG ++R+ V+
Sbjct: 109 SPPETMSPSSTECSVPSDSSRPSLFVDATSALVTGQSYENMVTEIMSMG---YEREQVIA 165
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQ 225
ALRA++NNP+RAVEYL GIP E Q VA P A++PTQ
Sbjct: 166 ALRASFNNPDRAVEYLLVGIPGDREGQAVADPPQT--LASTPTQ 207
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 40/51 (78%), Gaps = 2/51 (3%)
Query: 340 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 237 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL--QQNFDD 285
>gi|222622818|gb|EEE56950.1| hypothetical protein OsJ_06656 [Oryza sativa Japonica Group]
Length = 242
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 62/73 (84%)
Query: 141 SESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200
+E+ +YG AASNLVAG+NLEG +Q IL+MGGG WDRDTV+RAL AAYNNPERAVEYLY+G
Sbjct: 156 TEADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTG 215
Query: 201 IPEQAEVQPVARA 213
+P QAE V +A
Sbjct: 216 LPGQAEASAVVQA 228
>gi|347964389|ref|XP_311268.5| AGAP000733-PA [Anopheles gambiae str. PEST]
gi|333467508|gb|EAA06820.6| AGAP000733-PA [Anopheles gambiae str. PEST]
Length = 390
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 194/411 (47%), Gaps = 59/411 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPE-DTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
MKI +KTLK +F VEV E DTV +K K+ G YP +Q LIY GK+++DD L
Sbjct: 1 MKITLKTLKQQTFFVEVDVEQDTVRTLKEKLHAESGL-AYPVDRQRLIYLGKIMEDDHLL 59
Query: 61 EENKVAENSFVVIMLTK--------NKRPTGEG--STRSTAPTKAPQSSAPTPAATPATA 110
+ K+ + F+V+M K ++ +G+G + + TA + + P AT A+
Sbjct: 60 SQYKLDDKKFIVVMSKKPPADEPAPEQKESGDGKPADKDTAAGRVEGTGEP---ATSASK 116
Query: 111 PQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNN------------ 158
P T ++ + TP+PA A+ + +T+ AAS +N
Sbjct: 117 PSTGSAVTATASSTATPSPAPAAAAGAPSTASDQKTAAAASPAADSSNPTNPSTDAVPEE 176
Query: 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQ 218
+ IQ++ +MG + + AL N P+RAVEYL S + +++ A Q
Sbjct: 177 MRINIQRLTEMG---YPEQSARLALEICANIPDRAVEYLLSEMGGGSDMSFALTAAAQLQ 233
Query: 219 AANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLR 278
Q + +ANPL FLR++P F+ +R
Sbjct: 234 QQQQQQQGQGAGIGGAAAAQSGDANPLA--------------------FLRDNPVFEDMR 273
Query: 279 AMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG-------DQ 331
+++ +P +L +++ + NP L+ +I E+Q +FL LINE G G +
Sbjct: 274 RILRDDPSMLPYLMRRMQASNPDLLNIIAEYQDEFLALINEGSNAGGQPAGQPMSRELES 333
Query: 332 LAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+A M S+ TP + +AIERL+A+G+ +V++ + AC ++E AA +L+
Sbjct: 334 IAAAMVNSL--TPSDMDAIERLKALGYPEHLVIQAYIACERDEYDAAMFLV 382
>gi|242015323|ref|XP_002428309.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
gi|212512899|gb|EEB15571.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
Length = 156
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 102/178 (57%), Gaps = 29/178 (16%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP--TGE 84
+K KIE +G D YPA Q LIY GK+L D+T L E K+ E F+V+M+TK K P T
Sbjct: 4 LKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLSEYKIDEKKFIVVMVTKPKLPPATHA 62
Query: 85 GSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESG 144
GS+ ST PTP QT+ S EP PAS +V+S ++
Sbjct: 63 GSSDST----------PTPGTGDGGEKQTSDTTSNEP-------PASENVNSGAS----- 100
Query: 145 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
+G A S L+ G+ +++ I+DMG + ++ V RALRA++NNP+RAVEYL +GIP
Sbjct: 101 -FGQAESALLMGDEYNQSLRNIMDMG---YPKEQVERALRASFNNPDRAVEYLLNGIP 154
>gi|342320043|gb|EGU11986.1| Uv excision repair protein rhp23, putative [Rhodotorula glutinis
ATCC 204091]
Length = 403
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 85/133 (63%), Gaps = 10/133 (7%)
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEG- 326
LR++P F LR++VQ NP LLQP LQ+LG NP+L+ LI+ +Q F+ + E + GEG
Sbjct: 271 LRSNPVFGQLRSLVQQNPALLQPFLQQLGASNPELLSLIERNQQAFVEYLQEGLGEGEGL 330
Query: 327 -NLGDQLAGLMP--------QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELA 377
L DQ Q IQVT EER AI+RL AMGFD + ++ + AC++NEELA
Sbjct: 331 DALLDQFGDDGDDEGGMGGGQYIQVTEEERAAIQRLVAMGFDEQMAIQAYIACDRNEELA 390
Query: 378 ANYLLDHMHEFED 390
AN LL++ +F+D
Sbjct: 391 ANMLLENGFDFDD 403
>gi|301118881|ref|XP_002907168.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
gi|262105680|gb|EEY63732.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
Length = 449
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 96/170 (56%), Gaps = 39/170 (22%)
Query: 152 NLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVA 211
N+V+ + +QQ++DMG + D V ALRAA+NNPERAVEYL +GIPEQA
Sbjct: 145 NVVSDEQMSATVQQLVDMG---FPEDQVRSALRAAFNNPERAVEYLMTGIPEQAAA---- 197
Query: 212 RAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNS 271
P Q A V SSG +A D+ A SL+ LRN
Sbjct: 198 -----------------PAQTA-VPSSGASAGSDDV--------------ANSLEALRNH 225
Query: 272 PQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV 321
PQF LR +VQ+NP L +LQ++G Q+P+L+RLI ++Q F++++NEP+
Sbjct: 226 PQFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPI 275
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 340 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEF 388
I ++ EE A++RL MGF+R V++ + AC+KNE LAAN+L+D F
Sbjct: 381 IMLSEEEAAAVDRLCEMGFERTDVIQAYLACDKNEALAANFLMDSGDNF 429
>gi|392569695|gb|EIW62868.1| UV excision repair protein Rad23 [Trametes versicolor FP-101664
SS1]
Length = 388
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 78/117 (66%), Gaps = 10/117 (8%)
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG 329
N PQ Q LR ++ NP L+QP++QE+ QNPQL +L ++ +++ G+LG
Sbjct: 273 NHPQIQHLREIMAQNPALIQPVIQEIAAQNPQLAQLFAQNPEALAQILG-------GDLG 325
Query: 330 DQLAGLMP---QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLD 383
D+ G +P Q IQVT EER AIERLEA+GF R V+E +FAC+KNEELAANYL D
Sbjct: 326 DEEEGGIPPGAQVIQVTEEERAAIERLEALGFPRQAVIEAYFACDKNEELAANYLFD 382
>gi|255724082|ref|XP_002546970.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134861|gb|EER34415.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 335
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 128/263 (48%), Gaps = 36/263 (13%)
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI------PEQ 204
S G E IQ I++MG ++R V ALRAA+NNP RAVEYL +GI PEQ
Sbjct: 81 STFAVGTEREATIQNIMEMG---YERSQVEAALRAAFNNPHRAVEYLLTGIPESLQRPEQ 137
Query: 205 --AEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGA 262
A V PV A S T + G + N LF + GA
Sbjct: 138 PVAPVAPV--AQSEAPVGESTTTSAHDEEDDDEHEGGQHEN---LFEAAAAAAAAQEGGA 192
Query: 263 GSLDFLR-----------NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQA 311
+ + Q Q+LRA +Q+NP+L+QP+L++L NPQ+ LIQ+
Sbjct: 193 HAATAGGDAASAGGAGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIASLIQQDPE 252
Query: 312 DFLRL--------INEPVQGGE-GNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAI 362
F+R + ++G E G G + IQ++ +++ AI RL +GF+R +
Sbjct: 253 AFIRTFLGAGGEDLGFEIEGDESGFTGGEAGEEGTVRIQLSEQDQSAINRLCELGFERDL 312
Query: 363 VLEVFFACNKNEELAANYLLDHM 385
V++V+ AC+KNEE+AA+ L M
Sbjct: 313 VIQVYLACDKNEEVAADILFRDM 335
>gi|302834487|ref|XP_002948806.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
gi|300265997|gb|EFJ50186.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
Length = 366
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 85/128 (66%), Gaps = 11/128 (8%)
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN 327
LR++P F +LR V P+ L PMLQ+LG+ NP+LV++I ++Q +FLR++ EPV+G E
Sbjct: 242 LRDNPAFAMLRTAVAQEPRSLVPMLQQLGRSNPELVQVINQNQQEFLRMLTEPVEGDE-- 299
Query: 328 LGDQLAGLMPQS--------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
D +A L+ +++T ++ AI RL A+GFDR LE + AC+KNEE+AAN
Sbjct: 300 -DDAMAALLGGGEGGEGGMVVELTEDDEAAITRLAALGFDRNACLEAYLACDKNEEMAAN 358
Query: 380 YLLDHMHE 387
+L ++M +
Sbjct: 359 FLAENMFD 366
>gi|302668202|ref|XP_003025675.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
gi|291189798|gb|EFE45064.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 90/130 (69%), Gaps = 10/130 (7%)
Query: 263 GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ 322
GSL+FLRN+P FQ LR +VQ PQ+L+P+LQ++G NPQL +LI ++Q FL+L++E V
Sbjct: 256 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDV- 314
Query: 323 GGEGNLGDQLAGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANY 380
D L P QSI VT EER+AIERL +GF R V++ +FAC+KNEELAAN+
Sbjct: 315 -------DDETQLPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANF 367
Query: 381 LLDHMHEFED 390
L D E ED
Sbjct: 368 LFDQPDENED 377
>gi|345327426|ref|XP_001507990.2| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 292
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 107/207 (51%), Gaps = 42/207 (20%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK------- 79
+K KIET +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct: 45 LKEKIETEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKATATPMP 104
Query: 80 -----------RPTGEGSTRSTAPTKAPQSS------APTPAATPATAPQTAVPISTEPT 122
+ S++++A T AP S PTPA PA T P +P
Sbjct: 105 SPVVGQQSNPATTSTVSSSKASAVTPAPTPSPVLAPVTPTPAGEPA---PTVAPKEEKPA 161
Query: 123 PAPTPAPASASVSSVSA------------TSESGVYGHAASNLVAGNNLEGAIQQILDMG 170
P AP + S SS + S S ++ A S LV G + E + +I+ MG
Sbjct: 162 EKPVEAPVALSPSSSDSLTGDASGDASGDASRSNLFEDATSALVTGQSYENMVTEIMSMG 221
Query: 171 GGTWDRDTVVRALRAAYNNPERAVEYL 197
++R+ V+ ALRA++NNP+RAVEYL
Sbjct: 222 ---YEREQVIAALRASFNNPDRAVEYL 245
>gi|296816959|ref|XP_002848816.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
gi|238839269|gb|EEQ28931.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
Length = 377
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 90/130 (69%), Gaps = 10/130 (7%)
Query: 263 GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ 322
GSL+FLRN+P FQ LR +VQ PQ+L+P+LQ++G NPQL +LI ++Q FL+L++E +
Sbjct: 254 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDI- 312
Query: 323 GGEGNLGDQLAGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANY 380
D L P QSI VT EER+AIERL +GF R V++ +FAC+KNEELAAN+
Sbjct: 313 -------DDETQLPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANF 365
Query: 381 LLDHMHEFED 390
L D E ED
Sbjct: 366 LFDQPDEGED 375
>gi|125775113|ref|XP_001358808.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
gi|54638549|gb|EAL27951.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
Length = 313
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 105/386 (27%), Positives = 173/386 (44%), Gaps = 75/386 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ ++TL +E+ V +K ++ ++ G + Q LIY G++++D+ L
Sbjct: 1 MKLSIRTLDQRVITLEMDEGQNVLALKKRLVSMPGISQSVDSLQ-LIYGGRIMEDELPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K+AE+ F+V+M G + TK P A+ AT T
Sbjct: 60 EYKIAEDKFLVLM----------GKQKVQQVTKVELEKKPKETASAATG--------TGS 101
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP+ S + + TS VA N E +Q+++ MG ++ V
Sbjct: 102 TPSGDTGAESYATGGGNPTSS-----------VAPN--EEMVQRLMGMG---YEEMPVRA 145
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
AL A++N+PE A+EYL + IP +A +SG
Sbjct: 146 ALSASFNHPELAIEYLIAQIPSEA-------------------------------ASG-T 173
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
A+P+ + P S A A +L L + P+F LR M+ NP L+ +L ++ NP+
Sbjct: 174 ASPVCVSP-------SVAEMAVNLAPLMSDPRFAQLREMILQNPDQLEAILGQMSGSNPE 226
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRA 361
+ ++ H +F+ L+N + + + Q A Q +T E A++RL A+GF
Sbjct: 227 VFEGLRNHHGEFVDLLNYDLSLSDDDEFPQQAD-SAQQTPLTAAEAAAVDRLTALGFQHD 285
Query: 362 IVLEVFFACNKNEELAANYLLDHMHE 387
+ ++V+ ACNKNEELAA+ L E
Sbjct: 286 LAVQVYLACNKNEELAADVLFRQSEE 311
>gi|361129234|gb|EHL01146.1| putative UV excision repair protein rhp23 [Glarea lozoyensis 74030]
Length = 321
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 82/129 (63%), Gaps = 16/129 (12%)
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
+LDFLRN+ QFQ LR +VQ NPQ+L+P+LQ++G NPQL LI +H FL+L++E
Sbjct: 195 NLDFLRNNAQFQQLRQVVQQNPQMLEPILQQVGAGNPQLAALIGQHPEQFLQLLSED--- 251
Query: 324 GEGNLGDQLAGLMPQS----IQVTPEEREAIERLEA----MGFDRAIVLEVFFACNKNEE 375
GD A L P + I VT ER AIER+ + GF R ++ +FAC+KNEE
Sbjct: 252 -----GDNDAPLPPGAQATQISVTEPERAAIERVSSPDITFGFPRDQAIQAYFACDKNEE 306
Query: 376 LAANYLLDH 384
LAAN+L D
Sbjct: 307 LAANFLFDQ 315
>gi|167522036|ref|XP_001745356.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776314|gb|EDQ89934.1| predicted protein [Monosiga brevicollis MX1]
Length = 320
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 111/230 (48%), Gaps = 38/230 (16%)
Query: 160 EGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQA 219
E + ++++MG +DR V ALR A+ NP+RA EYL +G+P A
Sbjct: 119 EDDVNRLMNMG---FDRPQVEAALRRAFGNPDRAAEYLTTGMP----------------A 159
Query: 220 ANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRA 279
+P+ P +PA + PQ L + L FL ++P F LR
Sbjct: 160 EEAPSMDATPDEPAGGEGEA-------VVPQELSE-------DSPLYFLASNPSFLQLRQ 205
Query: 280 MVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG-----GEGNLGDQLAG 334
+VQ P LL MLQ++ NP LV LI E+Q DF L+N + G
Sbjct: 206 LVQEQPHLLPSMLQQIAASNPDLVSLINENQEDFYILLNAEDENGGAPMPGAGGAAGAGG 265
Query: 335 LMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+Q+T EE A+ERL +GFDR + L+ + AC K+E +AAN+LL +
Sbjct: 266 SGFPGVQLTQEEMAAVERLSQLGFDRNLALQAYIACEKDENMAANWLLSN 315
>gi|406866963|gb|EKD20002.1| nucleotide excision repair protein RAD23 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 435
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 84/123 (68%), Gaps = 10/123 (8%)
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
+LDFLRN+PQFQ LR +VQ P +L+P+L +G NPQL +LI ++ FL+L++E
Sbjct: 313 NLDFLRNNPQFQHLRQVVQQQPGMLEPILASVGAGNPQLAQLIGQNPDQFLQLLSE---- 368
Query: 324 GEGNLGDQLAGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYL 381
+ GD A L P Q+I VT EER AIERL A+GF R + ++ + AC+KNEELAAN+L
Sbjct: 369 ---DAGDD-APLPPGAQAISVTEEERAAIERLCALGFPRDLAIQAYIACDKNEELAANFL 424
Query: 382 LDH 384
+
Sbjct: 425 FEQ 427
>gi|195504946|ref|XP_002099297.1| GE23445 [Drosophila yakuba]
gi|194185398|gb|EDW99009.1| GE23445 [Drosophila yakuba]
Length = 297
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 170/383 (44%), Gaps = 97/383 (25%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ ++ L + +E+ + V +K ++ ++ + P Q LIY G++++D L
Sbjct: 1 MKLSIRMLDQRTITLEMNETEDVRTLKQRLSSLSEVALPPENVQ-LIYSGRIMEDAMPLS 59
Query: 62 ENKVAENSFVVIMLTK--NKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
E ++AE +V+M K ++RP E Q S P+P A A PI+
Sbjct: 60 EYRIAEGRIIVLMGKKKVDERPPVE------------QVSPPSPLA--------AGPIAM 99
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
T TP+ AS E +++++ MG G D V
Sbjct: 100 R-TQDVTPSIASN---------------------------EQLVRELMSMGYGEQD---V 128
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
ALRA++N+PERA+EYL +GIP++A Q
Sbjct: 129 RSALRASFNHPERAIEYLINGIPQEASPQ------------------------------- 157
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
Q L ++ SG + L L P+ +R M++ NP+L+Q +++ L + +
Sbjct: 158 ----------QELAEIPSGQS-TEELQHLMADPRLTRMREMIRENPELMQLIMERLAETD 206
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
P +Q Q F+ +++ G + G Q + ++ EE A+ERLEA+GF+
Sbjct: 207 PAAFEAVQHDQEGFMSMLSGAAGSAGGASHNPDEGEHFQ-VALSAEEAAAVERLEALGFE 265
Query: 360 RAIVLEVFFACNKNEELAANYLL 382
R + ++ + AC+K+E+LAA L
Sbjct: 266 RVMAVQAYLACDKDEQLAAEVLF 288
>gi|255712183|ref|XP_002552374.1| KLTH0C03410p [Lachancea thermotolerans]
gi|238933753|emb|CAR21936.1| KLTH0C03410p [Lachancea thermotolerans CBS 6340]
Length = 391
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 153 LVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVAR 212
V G+ + +Q+I++MG +DR+ V RALRAA+NNP+RAVEYL GIPE + +
Sbjct: 135 FVTGSRRDETVQRIMEMG---YDREQVERALRAAFNNPDRAVEYLLMGIPEHLQQTQQPQ 191
Query: 213 APGNGQAANSPTQMPQPTQP----APVTSSGPNANPLDLFPQ-----GLPDVGSGAAGAG 263
Q PQ + P A+ DLF Q G + G A G
Sbjct: 192 QQQQQQQQQQQQPEPQAQESHETQQPQEHEEQQASSDDLFAQAAASAGGEEGGDSARAPG 251
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
++ LR +V NP+ L P+L+ L + P+L I + F+ ++ E V G
Sbjct: 252 TIGL--TMEDLLSLRQVVTGNPEALPPLLESLSTRYPELREQIMTNPEMFISMLLEAVGG 309
Query: 324 G------EGNLG------------DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLE 365
EG+ G D ++++P+++EAI RL +GF+R +V++
Sbjct: 310 SLPEGIMEGDAGMEAGAEGALAGADVEGAEQAPQLEISPQDQEAISRLCELGFERTLVVQ 369
Query: 366 VFFACNKNEELAANYLL 382
V+FAC+KNEE+AAN L
Sbjct: 370 VYFACDKNEEIAANMLF 386
>gi|323355384|gb|EGA87208.1| Rad23p [Saccharomyces cerevisiae VL3]
Length = 335
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 129/269 (47%), Gaps = 51/269 (18%)
Query: 153 LVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVAR 212
V G I++I++MG + R+ V RALRAA+NNP+RAVEYL GIPE QP +
Sbjct: 79 FVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR-QPEPQ 134
Query: 213 APGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLP--DVGSGAAG--AGSLDFL 268
A T QPA DLF Q + SGA G G+ D
Sbjct: 135 QQTAAAAEQPSTAATTAEQPAED----------DLFAQAAQGGNASSGALGTTGGATDAA 184
Query: 269 RNSPQFQV---------LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE 319
+ P + LR +V NP+ L P+L+ + + PQL I + F+ ++ E
Sbjct: 185 QGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLE 244
Query: 320 PV--------QGGEGNL--------GDQLAGLMPQ-----SIQV--TPEEREAIERLEAM 356
V +G + + G+ A + Q S QV TPE+ +AI RL +
Sbjct: 245 AVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCEL 304
Query: 357 GFDRAIVLEVFFACNKNEELAANYLL-DH 384
GF+R +V++V+FAC+KNEE AAN L DH
Sbjct: 305 GFERDLVIQVYFACDKNEEAAANILFSDH 333
>gi|363751284|ref|XP_003645859.1| hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889493|gb|AET39042.1| Hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
Length = 443
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 119/458 (25%), Positives = 197/458 (43%), Gaps = 95/458 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
+ I K K +++ P T+ + K + + D +Q +I+ GKVL+D TL+
Sbjct: 3 ITINFKDFKKEKLPLQLSPTATIAEAKQLLAKEKQCD---ESQLKMIFSGKVLQDGHTLD 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ + V+ M++K K G+ S A T + T AA P AV S++
Sbjct: 60 ACKLKDGDQVIFMISKKKT----GTLMSPAATTTSTETKVTEAAAPGI---RAVESSSDK 112
Query: 122 TPAPTPAPASASVSSV-----------------SATSESGVYGHAASNLVAGNNLEGAIQ 164
AP ++++ + S+S H V G+ I+
Sbjct: 113 AKKTAGAPEGTAMAATTSSAVAAVDAGAAQPTNTTGSDSNPPDHG---FVTGSQRNETIE 169
Query: 165 QILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPT 224
+I++MG ++R V ALRAA+NNP+RAVEYL GIPE + P + G+G A S +
Sbjct: 170 RIMEMG---YERSQVESALRAAFNNPDRAVEYLLMGIPEHLQAAP--QPAGSGVVAASQS 224
Query: 225 QMPQPTQPAPVTSS-------------GPNANPLDLFPQGLPDVGSGAAGA------GSL 265
M + AP S G +A+ +LF Q AG G+L
Sbjct: 225 -MDTSSAIAPTVESATAGVTTATTHTGGASAHEDNLFAQAAAAESGDTAGVTEASATGTL 283
Query: 266 DFLRNSP---------QFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRL 316
+SP LR ++ +P+ L P+L+ L + P++ I + F+ +
Sbjct: 284 SH-GSSPLQTIGLTFEDLMQLRGVINGDPEALPPLLESLSDRYPEVREQIMGNPEMFISM 342
Query: 317 INEPVQG----------------GEGNLGDQLAG--------------LMPQSIQVTPEE 346
+ + V G GEG G+ A +Q+T ++
Sbjct: 343 LLQAVGGAIPSDSLDDAMSFRTEGEGEDGNTHANSEANPDGAVVSVSEAAQDRLQLTSDD 402
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
AI+RL +GFDR +V++V+ AC+KNE++ A+ L ++
Sbjct: 403 ITAIDRLCELGFDRDLVVQVYVACDKNEDITADMLFNN 440
>gi|76156833|gb|AAX27952.2| SJCHGC06167 protein [Schistosoma japonicum]
Length = 231
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 12/199 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ KTLK +F ++++ +D V DVK KIE +GS+ + A+ Q LI+ GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ KV ++ FVV+M +P EGS ++AP PT T P V S
Sbjct: 60 DYKVTDSGFVVVMSV--SKPAKEGS--ASAPGNPAGEGRPT---TDKKIPDVDVTESPSS 112
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P P S + + ++ + G S+LV G N E +Q+++ MG +++ V+R
Sbjct: 113 KPDANSQP-SLPTVTTTQSTTTNTLGFGESSLVTGENFERVVQELVSMG---FEKPLVIR 168
Query: 182 ALRAAYNNPERAVEYLYSG 200
A+RA +NNP+RA EYL SG
Sbjct: 169 AMRAGFNNPDRAFEYLSSG 187
>gi|392593502|gb|EIW82827.1| UV excision repair protein Rad23 [Coniophora puteana RWD-64-598
SS2]
Length = 424
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 79/122 (64%), Gaps = 5/122 (4%)
Query: 265 LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG 324
++ LRN PQ Q LR +VQ+NP L+QP++Q+L QNP+L + ++ ++ V
Sbjct: 295 IEALRNHPQIQQLRELVQSNPGLIQPLVQQLAAQNPELAQAFMQNPFALANILG--VDDE 352
Query: 325 EGNLGDQLAGLMP---QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYL 381
EG G + G +P +QVTPEER AIERLE +GF R +E +FAC+KNEELAANYL
Sbjct: 353 EGLAGMEGGGDLPPGAHVVQVTPEERAAIERLEGLGFPRQAAIEAYFACDKNEELAANYL 412
Query: 382 LD 383
+
Sbjct: 413 FE 414
>gi|167375270|ref|XP_001739824.1| UV excision repair protein rad23 [Entamoeba dispar SAW760]
gi|165896371|gb|EDR23800.1| UV excision repair protein rad23, putative [Entamoeba dispar
SAW760]
Length = 315
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 169/388 (43%), Gaps = 82/388 (21%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDT-VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDT-T 59
MKI VKT++G + E++PE T V ++K I QG D+ + LIY+ ++LKD+ T
Sbjct: 1 MKIIVKTIQGVLNEYEIEPETTTVGELKGMINAKQGIDIQNIS---LIYKSRMLKDNAQT 57
Query: 60 LEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
L + E +V+++ K S+ P P P T P+ T
Sbjct: 58 LGGLGINEGDSIVMVVKK--------------------SAVPAPKPAPVTQPENH---PT 94
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
EP P T P + + S T ++ V E I +++MG + RD
Sbjct: 95 EPVPQVTTQPITTNQPS---TQPVDIFQPQQRQQVNVEPTEENINHLVEMG---FLRDDA 148
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
++ALR + NN A ++L SG+ ++ + P G P +
Sbjct: 149 IKALRKSQNNTAIAADFLISGV----DLDNIPDQPAGGYEEEDPQE-------------- 190
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
PN+ + N + Q + + + PQ+++P LQ + +N
Sbjct: 191 PNS-------------------------ILNLTKEQFIE-LCREQPQIIEPFLQHIESEN 224
Query: 300 PQLVRLIQEHQADFLRLI----NEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEA 355
PQL +L++ + +I N E Q P Q++PE+ AI+RL A
Sbjct: 225 PQLAQLMRNNPGMVYDIIKGQTNNNRVPSESQPIPQQPNHAPSQPQLSPEDNAAIDRLCA 284
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLD 383
+GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 285 LGFGRSQCLQAYIACDKNEQLAANFLLD 312
>gi|145503696|ref|XP_001437822.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404979|emb|CAK70425.1| unnamed protein product [Paramecium tetraurelia]
Length = 324
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 109/383 (28%), Positives = 168/383 (43%), Gaps = 99/383 (25%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +KTL G +F++EV+P D+V ++K KIE V+ ++ AQQ L+ +G +L DD T+
Sbjct: 1 MKIIIKTLSGQTFELEVQPTDSVLNIKEKIEKVKQFEI---AQQKLLRKGTLLVDDQTVG 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + E F+V+M+ K P + P VP +P
Sbjct: 58 DLGIQEKDFLVVMVNVKK------GPPQQQPVQQQAQQPPQQPQPVQPQQPIEVP---KP 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PT SN+V G+ + AIQ ++ MG + +
Sbjct: 109 LNNPT-----------------------TSNMVTGSEYDQAIQNLIQMG---FAKSECEA 142
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
A++AA+NN RA+EYL +G+ PV P P QPA N
Sbjct: 143 AMKAAFNNQNRAIEYLLNGL-------PVIDQP--------------PPQPA------LN 175
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
AN +D Q + Q+LR NPQ + +Q+L + NPQ
Sbjct: 176 ANQVD---QNI---------------------LQLLREQFMQNPQAVLQSIQQLQQTNPQ 211
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRA 361
L + IQ++ ++L+ + G+G GD ++T EE + + +L MGF +
Sbjct: 212 LYQQIQQNPETLIQLL---MGAGQGE-GD------EIETEITQEEEQQLNQLMMMGFSKE 261
Query: 362 IVLEVFFACNKNEELAANYLLDH 384
LE F AC+KN E AA+YL +
Sbjct: 262 DALEGFLACDKNVETAASYLFEK 284
>gi|395333137|gb|EJF65515.1| UV excision repair protein Rad23 [Dichomitus squalens LYAD-421 SS1]
Length = 396
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 80/119 (67%), Gaps = 8/119 (6%)
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN 327
L + PQ Q LR ++Q NPQL QP++QEL QNP L +++ ++ +L++ + GEG+
Sbjct: 274 LADHPQIQHLRQLMQQNPQLAQPIIQELAAQNPGLAQVLGQNPEMLAQLLSGAL-AGEGD 332
Query: 328 LGDQLAGLMP---QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLD 383
G G +P Q + VT EER AIERLEA+GF R V+E +FAC+KNEELAANYL D
Sbjct: 333 EG----GDIPPGAQVVHVTEEERAAIERLEALGFPRQAVIEAYFACDKNEELAANYLFD 387
>gi|409080544|gb|EKM80904.1| hypothetical protein AGABI1DRAFT_112618 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 409
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 114/219 (52%), Gaps = 8/219 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKT + F ++++P DT+ +K KIE+ +PA Q +IY GK+L DD T+E
Sbjct: 1 MKITVKTTQQKVFQIDIEPTDTIGSLKAKIESAHN---HPAPTQKIIYSGKILSDDKTIE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
V E F V+M+ K K APT A + + + T P A T
Sbjct: 58 SCGVKEKDFFVLMVAKPKPTPTPKPETPAAPTTAEPTPPSSTSPATTTTPSHAETTETSS 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P+P P P + + ++ S +S S + G L+ IQ +++MG +DR+ V+R
Sbjct: 118 QPSPLPPPTTTATTTSSTSSTEPATLGDGSGFLTGAALQTTIQNMMEMG---FDREQVLR 174
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVA--RAPGNGQ 218
ALRA+YNNP+RAVEYL +GIP E + R P Q
Sbjct: 175 ALRASYNNPDRAVEYLMTGIPAHLEAEAAGPPRTPSTAQ 213
>gi|70930440|ref|XP_737130.1| DNA repair protein RAD23 [Plasmodium chabaudi chabaudi]
gi|56512258|emb|CAH84100.1| DNA repair protein RAD23, putative [Plasmodium chabaudi chabaudi]
Length = 243
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 131/257 (50%), Gaps = 31/257 (12%)
Query: 146 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQA 205
Y + S L+ G+ L+ AI I MG ++R+ V +A+ AYNNP A++YL +G
Sbjct: 1 YSNPESILLTGDKLKEAIDNICAMG---FERELVQKAMVLAYNNPNVAIDYLTNGF---- 53
Query: 206 EVQPVARAPGNGQAANSPTQMP--QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
Q + + P++ P + + +++ N N LD + V S A
Sbjct: 54 --QDIIDEGHDISDIKDPSENPNDRDENYSNLSNLLMNYNLLDENERQDMSVNSEA---- 107
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLIN--EPV 321
LRNSP F ++R +NPQ + +L+ +G+ +P L+ I+E+Q +FL + +
Sbjct: 108 ----LRNSPFFNIIRDAALSNPQRIPEILEMIGRSDPSLLEYIRENQNEFLNALQNYDTD 163
Query: 322 QGGEGNL--GDQLAGLMPQSIQ--------VTPEEREAIERLEAMGFDRAIVLEVFFACN 371
E +L + A Q+ + E E++ +LE++GF + + LE F AC+
Sbjct: 164 NNAENDLIPNYEYADEANQNTDNFNIPIASLNESEMESVRKLESLGFPKHVALEAFIACD 223
Query: 372 KNEELAANYLLDHMHEF 388
KNEE+AANYL ++M+++
Sbjct: 224 KNEEMAANYLFENMNDY 240
>gi|340504527|gb|EGR30961.1| uv excision repair protein rad23, putative [Ichthyophthirius
multifiliis]
Length = 423
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 167/385 (43%), Gaps = 79/385 (20%)
Query: 2 MKIFVKTLKGTSF-DVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDD-TT 59
MK+ +KTLKG F ++ + E T+ +K I +G + L+++GK L DD
Sbjct: 1 MKLTIKTLKGNDFFEINFQNETTISQIKDTICQKKGEQCKENIK--LVHKGKQLNDDQKN 58
Query: 60 LEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
+E + EN F+++M+ K+ G+ + A + Q + P P+ +
Sbjct: 59 CQELGIKENDFLIMMVFTKKQ--GQIPKQQPAEIQNEQQTQINP------------PVQS 104
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ P +S +T S E ++ I MG +++ +
Sbjct: 105 DSAQNHLQKPP-CQISQQQSTENSE--------------FEQKVKDIEAMG---FEKSKI 146
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
++AL+AA+NN ERA+EYL +G +P Q +
Sbjct: 147 IQALQAAFNNQERAIEYLLNG------------------------NIPILQQQQQQPNLQ 182
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
PLD P L ++ + A PQFQ + +++ NPQL+ P+LQEL + N
Sbjct: 183 NQEQPLD--PVNLEELQALAQN----------PQFQQIVQVIRQNPQLILPILQELSQTN 230
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
PQL +L+Q + FL I + + +IQ+ +E +E + +GFD
Sbjct: 231 PQLAQLLQSNPQAFLSYILQQEDQQD-------DNDESNAIQLNNQESNDVEEIIMLGFD 283
Query: 360 RAIVLEVFFACNKNEELAANYLLDH 384
+ LE + AC+K +ELA NYL D
Sbjct: 284 KNDALEAYIACDKQKELAINYLFDQ 308
>gi|389741638|gb|EIM82826.1| UV excision repair protein Rad23 [Stereum hirsutum FP-91666 SS1]
Length = 395
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 11/126 (8%)
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
L LR++PQ LR +V NP L+QP++Q+L NPQL +LI ++ +L+ G
Sbjct: 269 DLSALRDNPQIAQLRELVAQNPALIQPLIQQLAGSNPQLAQLIAQNPEALFQLL-----G 323
Query: 324 GEGNLG---DQLAGLMP---QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELA 377
GE L D G +P Q I +T EER+AIERLEA+GF R V+E +FAC+KNEELA
Sbjct: 324 GENGLDFEDDGEGGGLPPGAQVINITEEERQAIERLEALGFPRQAVIEAYFACDKNEELA 383
Query: 378 ANYLLD 383
ANYL +
Sbjct: 384 ANYLFE 389
>gi|310791559|gb|EFQ27086.1| UV excision repair protein Rad23 [Glomerella graminicola M1.001]
Length = 391
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 86/127 (67%), Gaps = 10/127 (7%)
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE 319
G G+LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NPQL +LI + FL+L+ E
Sbjct: 264 GGFGNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLQLLGE 323
Query: 320 PVQGGEGNLGDQLAGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELA 377
V D L P Q+IQVT EER+AIERL +GFDR ++ +FAC+KNEELA
Sbjct: 324 EV--------DDDVPLPPGAQAIQVTEEERDAIERLCRLGFDRDAAIQAYFACDKNEELA 375
Query: 378 ANYLLDH 384
AN+L D
Sbjct: 376 ANFLFDQ 382
>gi|444723953|gb|ELW64577.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 302
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 109/212 (51%), Gaps = 35/212 (16%)
Query: 27 VKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGS 86
+K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T
Sbjct: 7 LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAP 66
Query: 87 TRSTAPTKA-----------------PQSSAPTPAATPATAPQTAVPISTEPTPA----- 124
T + A + A PA+TPA+ + +S+EP PA
Sbjct: 67 TTTQQSNPATTTTVTSSTAPAVAQAPAPTPALAPASTPASITPVSTTVSSEPAPASATKQ 126
Query: 125 --PTPAPASASVS--------SVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTW 174
P PA V+ + +S S ++ A S LV G + E + +I+ MG +
Sbjct: 127 EKPAEKPADTPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---Y 183
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
+R+ V+ ALRA++NNP+RAVEYL I + E
Sbjct: 184 EREQVIAALRASFNNPDRAVEYLLMQISQHQE 215
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 59/91 (64%), Gaps = 11/91 (12%)
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGN----------LGDQLAGLMPQSIQVTPEEREAIE 351
L+ I +HQ F++++NEPVQ G + + +G M IQVTP+E+EAIE
Sbjct: 206 LLMQISQHQEHFIQMLNEPVQEAGGQGGGGGSGSGGIAEAGSGHM-NYIQVTPQEKEAIE 264
Query: 352 RLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
RL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 265 RLKALGFPEGLVIQAYFACEKNENLAANFLL 295
>gi|217071960|gb|ACJ84340.1| unknown [Medicago truncatula]
Length = 110
Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats.
Identities = 46/90 (51%), Positives = 66/90 (73%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P D++ VK IE +QG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTA 91
+NKV+E+ F+V+ML+K+K G++ + A
Sbjct: 61 DNKVSEDGFLVVMLSKSKVLGSAGTSSTQA 90
>gi|71022291|ref|XP_761375.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
gi|46097608|gb|EAK82841.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
Length = 447
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 114/236 (48%), Gaps = 48/236 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +K+L G +F ++ + DT+ +K KI+ QG + Q +I+ GK+L DD T+
Sbjct: 1 MKILIKSLAGGNFHLDAELTDTIGTIKSKIQNEQG---HAPELQKIIFSGKILTDDKTVA 57
Query: 62 ENKVAENSFVVIMLTKNKRP---TGEGSTRSTAPTKAPQSSAPTPAATPATAP------Q 112
+ K+ E F+V+M++K K P T ST AP K +++ A
Sbjct: 58 DCKIKEKDFLVVMVSKPKAPKPATAGASTSVAAPEKPTEAALAPAPDAARAAAEAPKGQD 117
Query: 113 TAVPIS------------------------TEPTPAPTPAPASASVSSVSATSESGVYGH 148
AVP S P A + P+SA S TS S
Sbjct: 118 AAVPTSDSSSPATTATAAATTTAAAAAAAADAPASAESATPSSAQTQQPSGTSGS----- 172
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204
+ G LE A+Q +++MG ++RD V RA+RAA+NNP+RAVEYL +GIPE
Sbjct: 173 ----FLTGGALESAMQSMVEMG---FERDQVQRAMRAAFNNPDRAVEYLMTGIPEH 221
>gi|328865496|gb|EGG13882.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 130
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 75/123 (60%), Gaps = 14/123 (11%)
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN 327
LRN PQF VLR +Q NPQ++ +LQ+ + NPQLVR I E+ +FLRL
Sbjct: 17 LRNHPQFAVLREAIQRNPQVITELLQQYSQSNPQLVRQITENPQEFLRLFQ--------- 67
Query: 328 LGDQLAGLMPQ--SIQVTPEEREAIERL-EAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
DQ P +IQVTPEER AIERL + G D+ V+E +FAC+KNEEL A+YL +
Sbjct: 68 --DQQGAPQPNQVAIQVTPEERAAIERLIQLTGMDKHEVIEAYFACDKNEELTASYLFER 125
Query: 385 MHE 387
E
Sbjct: 126 ADE 128
>gi|21355163|ref|NP_651212.1| CG10694 [Drosophila melanogaster]
gi|7301100|gb|AAF56234.1| CG10694 [Drosophila melanogaster]
gi|19527925|gb|AAL90077.1| AT15685p [Drosophila melanogaster]
gi|220949914|gb|ACL87500.1| CG10694-PA [synthetic construct]
gi|220958714|gb|ACL91900.1| CG10694-PA [synthetic construct]
Length = 290
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 165/391 (42%), Gaps = 103/391 (26%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ ++ L + +E+ V +K K+ + PA LIY G++++D L
Sbjct: 1 MKLSIRMLDQRTITLEMNESQEVRALKQKLGNLPEV-AMPAENLQLIYSGRIMEDAMPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTP--AATPATAPQTAVPIST 119
E ++AE+ +V+M G+ ++P + APTP AA P + T
Sbjct: 60 EYRIAEDKIIVLM--------GKKKVDKSSPE---EKVAPTPPLAAGPNV-------LRT 101
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
E P+ AP VS ++ MG G + V
Sbjct: 102 EDV-VPSLAPNDQWVSD-----------------------------LMSMGYG---EEEV 128
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
ALRA++N+PERA+EYL +GIP Q V G ++
Sbjct: 129 RSALRASFNHPERAIEYLINGIP-----QEVVSEQG--------------------LAAI 163
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
P+ D Q + D L+ R +R M+ NP+L+ ++ L + +
Sbjct: 164 PSVQTSDQLQQLMAD----------LNITR-------MREMINQNPELIHRLMNRLAETD 206
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
P + Q +Q + + +I+ GG +++ L I +T EE A+ RLEA+GF+
Sbjct: 207 PATFEVFQRNQEELMNMIS----GGASRTPNEIEHL---QITLTAEETAAVGRLEALGFE 259
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFED 390
R + ++ + AC+K+E+LAA L+ E D
Sbjct: 260 RVMAVQAYLACDKDEQLAAEVLIRQSEEDRD 290
>gi|24638593|ref|NP_726561.1| Rad23, isoform B [Drosophila melanogaster]
gi|22759400|gb|AAN06526.1| Rad23, isoform B [Drosophila melanogaster]
Length = 343
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 24/181 (13%)
Query: 141 SESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200
+++ + A SNL+ G+ + +++MG + R+ V RA+ A+YNNPERAVEYL +G
Sbjct: 70 AQASLQSRAESNLLMGDEYNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEYLING 126
Query: 201 IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAA 260
IP + + +P+ +P QPA TS+ S +
Sbjct: 127 IPAEE-----GTFYNRLNESTNPSLIPSGPQPASATSAE----------------RSTES 165
Query: 261 GAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP 320
+ +FLR+ PQF +R+++ NP LL +LQ++G+ NP L++LI E+Q FL ++N+P
Sbjct: 166 NSDPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQP 225
Query: 321 V 321
+
Sbjct: 226 I 226
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 37/44 (84%)
Query: 339 SIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+I++ ++++AIERL+A+GF A+VL+ +FAC KNEE AAN+LL
Sbjct: 294 TIRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFLL 337
>gi|407926704|gb|EKG19665.1| Ubiquitin-associated/translation elongation factor EF1B
[Macrophomina phaseolina MS6]
Length = 383
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 84/125 (67%), Gaps = 10/125 (8%)
Query: 265 LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG 324
LDFLRN+PQFQ LR +VQ P +L+P+LQ++G+ NPQL +LI +H FL L++E
Sbjct: 264 LDFLRNNPQFQQLRQLVQQQPHMLEPILQQVGQGNPQLAQLIADHPEQFLSLLSED---- 319
Query: 325 EGNLGDQLAGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
D L P Q + +T EE EAI+RL +GF+R +V++ +FAC+KNEELAAN+L
Sbjct: 320 ----HDDDTPLPPGAQVVSITEEESEAIDRLCRLGFERDLVVQAYFACDKNEELAANFLF 375
Query: 383 DHMHE 387
D E
Sbjct: 376 DQPEE 380
>gi|406700023|gb|EKD03210.1| hypothetical protein A1Q2_02493 [Trichosporon asahii var. asahii
CBS 8904]
Length = 339
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 3/122 (2%)
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN 327
L NSPQ Q +R VQ NP L+QP+LQ++ NP L +++ ++ L+ G E +
Sbjct: 219 LANSPQLQRIRQAVQENPALIQPLLQQIAASNPGLAQMLNQNPQALYDLLG---VGDEDD 275
Query: 328 LGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
G+ G + +T EE A+ERLE +GFDR +VL+ F AC+KNEELAANYL + E
Sbjct: 276 GGEDYGGAQVMHVNLTQEEAAAVERLEQLGFDRQVVLQAFLACDKNEELAANYLFEIAEE 335
Query: 388 FE 389
E
Sbjct: 336 DE 337
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 15/94 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---------- 51
MKI KT+ F ++ +T+ +K KI+ Q +PA Q LIY G
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 52 --KVLKDDTTLEENKVAENSFVVIMLTKNKRPTG 83
K+LKDD T+ + K+ E F+V+M++K TG
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSKLTTVTG 91
>gi|401883698|gb|EJT47893.1| hypothetical protein A1Q1_03199 [Trichosporon asahii var. asahii
CBS 2479]
Length = 348
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 3/122 (2%)
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN 327
L NSPQ Q +R VQ NP L+QP+LQ++ NP L +++ ++ L+ G E +
Sbjct: 228 LANSPQLQRIRQAVQENPALIQPLLQQIAASNPGLAQMLNQNPQALYDLLG---VGDEDD 284
Query: 328 LGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
G+ G + +T EE A+ERLE +GFDR +VL+ F AC+KNEELAANYL + E
Sbjct: 285 GGEDYGGAQVMHVNLTQEEAAAVERLEQLGFDRQVVLQAFLACDKNEELAANYLFEIAEE 344
Query: 388 FE 389
E
Sbjct: 345 DE 346
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 15/90 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---------- 51
MKI KT+ F ++ +T+ +K KI+ Q +PA Q LIY G
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 52 --KVLKDDTTLEENKVAENSFVVIMLTKNK 79
K+LKDD T+ + K+ E F+V+M++K K
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSKPK 87
>gi|452985526|gb|EME85282.1| hypothetical protein MYCFIDRAFT_119289, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 390
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 88/123 (71%), Gaps = 10/123 (8%)
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
SLDFLRN+PQFQ LR +VQ PQ+L+P+LQ++ NPQL ++I ++ F++L+ E
Sbjct: 270 SLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVAAGNPQLAQIITQNPEQFMQLLAE---- 325
Query: 324 GEGNLGDQLAGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYL 381
+ GD +A L P Q I VT EEREAIERL +GF+R +V++ +FAC+KNEELAAN+L
Sbjct: 326 ---DSGDDVA-LPPGAQQISVTEEEREAIERLCRLGFERDLVIQAYFACDKNEELAANFL 381
Query: 382 LDH 384
D
Sbjct: 382 FDQ 384
>gi|224057188|ref|XP_002299163.1| predicted protein [Populus trichocarpa]
gi|222846421|gb|EEE83968.1| predicted protein [Populus trichocarpa]
Length = 349
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 60/76 (78%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F+++V+P DTV VK IE VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTK 77
+NKV E+ F+V+ML+K
Sbjct: 61 DNKVTEDGFLVVMLSK 76
>gi|339249469|ref|XP_003373722.1| putative UBA/TS-N domain protein [Trichinella spiralis]
gi|316970103|gb|EFV54095.1| putative UBA/TS-N domain protein [Trichinella spiralis]
Length = 521
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 133/311 (42%), Gaps = 79/311 (25%)
Query: 118 STEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRD 177
STE A +A+ + S+ + + H L +NL + ++ MG + +
Sbjct: 241 STEAKSIQRKAVQAANTAGASSNTVTANDRHETMELQLDDNL---VNELCMMG---FRKS 294
Query: 178 TVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
+VV AL+ AYNNP+ A++YL SG+ ++ + N A Q V
Sbjct: 295 SVVVALKMAYNNPDVAIDYLTSGV----DLIRLKERIDNEIA-----------QSRTVGQ 339
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
G N D Q LR++P + LR +VQ +P +L ++ E+ +
Sbjct: 340 DGGNEPEYDGIAQ-----------------LRHNPAIKQLRLVVQRDPTMLHDVIMEIER 382
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGE-------------------------------- 325
NP + RLIQE+Q F++L+NE V E
Sbjct: 383 ANPNITRLIQENQEAFVQLLNERVDQNEPMKQEVQKQQQQPQQQQQQQQQQPQQQRRRQQ 442
Query: 326 ------GNLGDQLAGLMPQSIQVTPEEREAIER---LEAMGFDRAIVLEVFFACNKNEEL 376
+G I +T EER+A++R L AMGF + V+E +FAC+KNE L
Sbjct: 443 QQQQHQQQEQSTSSGTRIFRIHLTAEERDAVDRCQALVAMGFSESQVIEAYFACDKNEAL 502
Query: 377 AANYLLDHMHE 387
AAN+LL + E
Sbjct: 503 AANFLLQSLEE 513
>gi|167998815|ref|XP_001752113.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696508|gb|EDQ82846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 76
Score = 99.4 bits (246), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG FD++V ++ V VK KIE QG D +P AQQ+LI+QGKVLKD+TT+
Sbjct: 1 MKISVKTLKGNHFDLQVAEDELVSSVKRKIEGSQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 62 ENKVAENSFVVIMLTK 77
+NKVAEN F+V+MLTK
Sbjct: 61 DNKVAENGFLVVMLTK 76
>gi|302417214|ref|XP_003006438.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
gi|261354040|gb|EEY16468.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
Length = 394
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 86/130 (66%), Gaps = 10/130 (7%)
Query: 263 GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ 322
G+LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NPQL +LI + FL L+ E V
Sbjct: 268 GNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLSLLGEDV- 326
Query: 323 GGEGNLGDQLAGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANY 380
D L P Q+I VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+
Sbjct: 327 -------DDDVPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANF 379
Query: 381 LLDHMHEFED 390
L D + +D
Sbjct: 380 LFDQPEDDDD 389
>gi|402588417|gb|EJW82350.1| UV excision repair protein Rad23 [Wuchereria bancrofti]
Length = 190
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 99/208 (47%), Gaps = 39/208 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + KT+ SF++E+ P T+ +VK KI +G YP Q LIY GKVL D T+E
Sbjct: 1 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPA--ATPATAPQTAVPIST 119
E + + FVV+M+ + K P AP S P P+ PA A T P+S
Sbjct: 61 EVMIDPSKFVVVMIARKK------------PIGAPVESTPQPSNLQIPAGAQATTAPVSV 108
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+ TP S T+ Q I+ MG + RD V
Sbjct: 109 ADSGPSTPQNPDGLTSEQEETA----------------------QAIVAMG---YPRDKV 143
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEV 207
+RALRA++ N +RAVEYL SGIPE+ ++
Sbjct: 144 IRALRASFFNGDRAVEYLCSGIPEEEDL 171
>gi|67466741|ref|XP_649512.1| RAD23 protein [Entamoeba histolytica HM-1:IMSS]
gi|56465972|gb|EAL44126.1| RAD23 protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707323|gb|EMD47005.1| RAD23 protein, putative [Entamoeba histolytica KU27]
Length = 314
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 169/390 (43%), Gaps = 87/390 (22%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDT-VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDT-T 59
MKI VKT++G + E++PE T V ++K I QG D+ + LIY+ ++LKD+
Sbjct: 1 MKIIVKTIQGILNEYEIEPETTTVGELKGMINAKQGIDIQNIS---LIYKSRMLKDNAQN 57
Query: 60 LEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
L + E +V+++ K S+ P P P T P+T ST
Sbjct: 58 LGGLGINEGDSIVMVVKK--------------------SAVPPPKLAPVTQPETH---ST 94
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
EP PT P + + S T ++ V E I +++MG + RD
Sbjct: 95 EPIQQPTTQPITTNQPS---TQPVDIFQSQQRQTVNVEPTEENINHLVEMG---FLRDDA 148
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
++ALR + NN A ++L SG+ ++ + P QP
Sbjct: 149 IKALRKSQNNTAIAADFLISGV----DLDNI------------------PDQP------- 179
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
A + +PQ GS+ L ++ R PQ+++ +Q + +N
Sbjct: 180 --AGSYEEYPQ----------EPGSILNLTKDQFIELCREQ----PQIIESFIQHVESEN 223
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQ------SIQVTPEEREAIERL 353
P +LI+ + +I Q + + + PQ Q++PE+ AI+RL
Sbjct: 224 PSAAQLIRNNPGMIYDIIKS--QTNDNRVPSEPQHTQPQPNHAPSQPQLSPEDNAAIDRL 281
Query: 354 EAMGFDRAIVLEVFFACNKNEELAANYLLD 383
+GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 282 CGLGFGRSQCLQAYIACDKNEQLAANFLLD 311
>gi|326427438|gb|EGD73008.1| hypothetical protein PTSG_04717 [Salpingoeca sp. ATCC 50818]
Length = 127
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 71/128 (55%), Gaps = 18/128 (14%)
Query: 267 FLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEG 326
FL P F LR +V NP L +LQ L NP LV+LI ++Q DF LIN P
Sbjct: 11 FLHIDPAFNQLRRLVHQNPAHLPSLLQHLASSNPDLVQLINDNQEDFYHLINAPSVAA-- 68
Query: 327 NLGDQLAGLMPQS-------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
MPQ +Q++PE+ EAIERL A GFDRA + +FAC+K+E AAN
Sbjct: 69 ---------MPQGPPPGAQGLQLSPEDAEAIERLVAFGFDRATAAQAYFACDKDENAAAN 119
Query: 380 YLLDHMHE 387
+L +H +E
Sbjct: 120 WLFEHGNE 127
>gi|167541066|gb|ABZ82043.1| DNA repair protein, partial [Clonorchis sinensis]
Length = 156
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 81/127 (63%), Gaps = 12/127 (9%)
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--QGGE 325
L + PQFQ +RA+VQANP+LL ++Q++G N +L+RLIQE++ FL +N P+ GE
Sbjct: 21 LASLPQFQQMRALVQANPELLPQLIQQIGADNSELLRLIQENEQGFLEFLNAPISQDAGE 80
Query: 326 GNLGDQLAGLMPQSIQ----------VTPEEREAIERLEAMGFDRAIVLEVFFACNKNEE 375
+ P +++ +T EER AIERL+A+GF +V++ ++AC KNE+
Sbjct: 81 PEGIESSETTTPGNVRQGEPRQIILTMTQEERAAIERLQALGFPEELVIQAYYACEKNED 140
Query: 376 LAANYLL 382
AAN+LL
Sbjct: 141 AAANFLL 147
>gi|398407563|ref|XP_003855247.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
gi|339475131|gb|EGP90223.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
Length = 394
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 86/124 (69%), Gaps = 7/124 (5%)
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
+LDFLRN+PQFQ LR +VQ P +L+P+LQ++ +PQL ++I ++ F++L+ E
Sbjct: 271 NLDFLRNNPQFQQLRQVVQQQPGMLEPILQQVAAGSPQLAQIITQNPEQFMQLLAE---- 326
Query: 324 GEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLD 383
+G+ D LA SI VT EER+AIERL +GF+R V++ +FAC+KNEELAAN+L D
Sbjct: 327 -DGD--DDLAAPPGGSIAVTEEERDAIERLCRLGFERQDVIQAYFACDKNEELAANFLFD 383
Query: 384 HMHE 387
E
Sbjct: 384 QPDE 387
>gi|194909981|ref|XP_001982049.1| GG11252 [Drosophila erecta]
gi|190656687|gb|EDV53919.1| GG11252 [Drosophila erecta]
Length = 297
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 157/386 (40%), Gaps = 103/386 (26%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ ++ L + +E+ V +K + + + PA LIY G++++D L
Sbjct: 1 MKLSIRMLDQHTITLEMNESQDVKTLKQILGNLPEVSL-PAENVQLIYSGRIMEDAMPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E +AE +V+M K S P +P T P A P+ T+
Sbjct: 60 EYNIAEGRIIVLM-----------------GKKKADVSLPEEQVSP-TIPLAAEPMRTQD 101
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P+ AP V ++ MG G + V
Sbjct: 102 V-TPSMAPNEQWVCD-----------------------------LMSMGYGEQE---VRS 128
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRA++N+PERA+EYL +GIP++A SP
Sbjct: 129 ALRASFNHPERAIEYLINGIPQEA----------------SPEH---------------- 156
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
L ++ SG + L L P+ +R M++ NP+L+Q +L+ L +P
Sbjct: 157 ---------ELAEIPSGQS-TEQLQHLMGDPRLTQVREMIRENPELMQLILERLADTDPA 206
Query: 302 LVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQS-----IQVTPEEREAIERLEAM 356
+ Q + ++ G G++GD P + +T EE A+ERLEA+
Sbjct: 207 AFEDVHRDQEGLMTML----AGVAGSVGDANHNHNPDEGELLQVALTAEEAAAVERLEAL 262
Query: 357 GFDRAIVLEVFFACNKNEELAANYLL 382
GF+R + ++ + AC+K+E+LAA L+
Sbjct: 263 GFERVMAVQAYLACDKDEQLAAEVLI 288
>gi|195331506|ref|XP_002032442.1| GM26556 [Drosophila sechellia]
gi|194121385|gb|EDW43428.1| GM26556 [Drosophila sechellia]
Length = 288
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 166/390 (42%), Gaps = 103/390 (26%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQM-LIYQGKVLKDDTTL 60
MK+ ++ L +S +E+ V +K ++ V AA+ + LIY G++++D L
Sbjct: 1 MKLSIRMLDQSSITLEMDESQEVRALKQRLGN--SPKVAMAAENLQLIYNGRIMEDAMPL 58
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E ++AE+ +V+M K+ S APT P AA P + TE
Sbjct: 59 SEYRIAEDKIIVLM--GKKKVIESPSEEQVAPT-------PPLAAGPTV-------LRTE 102
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
AP+ AP V+ ++ MG G + V
Sbjct: 103 DV-APSLAPNDQWVND-----------------------------LMSMGYG---EEEVR 129
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
ALRA++N+PERA+EYL +GIP++ A G AA
Sbjct: 130 SALRASFNHPERAIEYLINGIPQEV-------ASEQGLAA-------------------- 162
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
+P+V + + L L P +R M+ NP+L+ ++ L + +P
Sbjct: 163 -----------VPNVQA----SEQLQHLLADPSITRMREMLNQNPELMHRLMDRLAETDP 207
Query: 301 QLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDR 360
+ +Q DFL +I+ G +++ L I +T EE A+ RLEA+GF+R
Sbjct: 208 ATYEALGRNQ-DFLNMIS-----GGARRTNEVGHL---EITLTAEEAAAVGRLEALGFER 258
Query: 361 AIVLEVFFACNKNEELAANYLLDHMHEFED 390
+ ++ + AC+K+E+LAA L+ E D
Sbjct: 259 VMAVQAYLACDKDEQLAAEILIRQSEEDRD 288
>gi|195037074|ref|XP_001989990.1| GH18491 [Drosophila grimshawi]
gi|193894186|gb|EDV93052.1| GH18491 [Drosophila grimshawi]
Length = 282
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 55/219 (25%)
Query: 164 QQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSP 223
Q++ D+ ++ V ALRA++N+PERA+EYL +GIP QA+ Q
Sbjct: 111 QRVRDLILMGYEEQDVRAALRASFNHPERAIEYLITGIPNQADQQQ-------------- 156
Query: 224 TQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQA 283
T++G + D + A L++L P+F +R +V+
Sbjct: 157 ------------TTAGSH------------DGAEVSEAAERLNYLATDPRFAHVRDLVRQ 192
Query: 284 NPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVT 343
NP+LL+ +L L + +P I+ +Q +F+ ++N+P ++
Sbjct: 193 NPELLELVLSHLRETDPAAFATIRNNQEEFVNMLNQPTAAD-----------------LS 235
Query: 344 PEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
++ A+ERL A+GF+R +V+ V+ AC+KNEEL A+ L
Sbjct: 236 SDDEAAVERLMALGFERDVVVPVYLACDKNEELTADLLF 274
>gi|346975858|gb|EGY19310.1| nucleotide excision repair protein RAD23 [Verticillium dahliae
VdLs.17]
Length = 394
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 85/129 (65%), Gaps = 10/129 (7%)
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
+LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NPQL +LI + FL L+ E V
Sbjct: 269 NLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLSLLGEDV-- 326
Query: 324 GEGNLGDQLAGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYL 381
D L P Q+I VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 327 ------DDDVPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFL 380
Query: 382 LDHMHEFED 390
D + +D
Sbjct: 381 FDQPEDDDD 389
>gi|123495684|ref|XP_001326794.1| Ubiquitin family protein [Trichomonas vaginalis G3]
gi|121909714|gb|EAY14571.1| Ubiquitin family protein [Trichomonas vaginalis G3]
Length = 330
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 104/389 (26%), Positives = 167/389 (42%), Gaps = 72/389 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ ++T+ G ++ V+P T+ ++K+ + + ++V P + LIY K L D T+
Sbjct: 1 MEVSLRTISGVTYKQAVEPTTTIAELKVLVS--EKANVAPEGIK-LIYSAKFLDDSKTIA 57
Query: 62 ENKVAENSFVVIML--TKN-KRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS 118
E+ + +++ + +KN K+P + S + +P K +P + A P
Sbjct: 58 ESNIQPGQAIIMHVQSSKNAKQPQKKSSEKRKSPKKE----------SPIKVQEAAAPAP 107
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T+P T P S V+ E A LV N +Q + +MG D
Sbjct: 108 TQPKEEATQKPEQPGHSMVAPLPE----LEAKHQLVDPPNFNALVQTLTEMGFSEGD--- 160
Query: 179 VVRALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTS 237
ALRAA NP+RA E+L + IPE MPQ P +
Sbjct: 161 AAHALRAAVYNPDRAAEFLLTNYIPE----------------------MPQLYDPNDL-- 196
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
AN + + A +L FLR + NP+LL L++L
Sbjct: 197 ----ANEEEDYDDDDNSDEEDDEQASTLQFLRQ----------LHQNPELLPIYLKDLAD 242
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLG-----DQLAGLMPQSIQVTPEEREAIER 352
NP + LI+ A F L++ V E +L + LM + T EE++AI R
Sbjct: 243 NNPAVAPLIRNDPASF--LVSLGVNPSEFDLSSLKHKSEFETLME---KFTEEEQKAIHR 297
Query: 353 LEAMGFDRAIVLEVFFACNKNEELAANYL 381
LE +GFD V++VF AC+++E L + L
Sbjct: 298 LEKLGFDTTDVIQVFEACDRDENLTKSCL 326
>gi|357504017|ref|XP_003622297.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497312|gb|AES78515.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 697
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+MK+ VKTLKG+ F++ V P D++ VK IE +QG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 570 VMKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTL 629
Query: 61 EENKVAENSFVVIMLTK 77
+N+V+E+ F+V+ML+K
Sbjct: 630 ADNEVSEDGFLVVMLSK 646
>gi|356498318|ref|XP_003518000.1| PREDICTED: uncharacterized protein LOC100787330 [Glycine max]
Length = 159
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Query: 5 FVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENK 64
F TLKGT F V+V P DTV DVK IE QG DVYP AQ+MLI+QGKVLKD TTLEENK
Sbjct: 48 FEVTLKGTHFVVQVNPRDTVADVK-NIEIAQGVDVYPGAQRMLIHQGKVLKDATTLEENK 106
Query: 65 VAENSFVVIMLTK 77
V E++ VVIML+K
Sbjct: 107 VVEDNSVVIMLSK 119
>gi|357504019|ref|XP_003622298.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497313|gb|AES78516.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 416
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+MK+ VKTLKG+ F++ V P D++ VK IE +QG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 289 VMKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTL 348
Query: 61 EENKVAENSFVVIMLTK 77
+N+V+E+ F+V+ML+K
Sbjct: 349 ADNEVSEDGFLVVMLSK 365
>gi|342883708|gb|EGU84158.1| hypothetical protein FOXB_05335 [Fusarium oxysporum Fo5176]
Length = 390
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 82/124 (66%), Gaps = 10/124 (8%)
Query: 263 GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ 322
G+LDFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NPQL LI + FL+L+
Sbjct: 263 GNLDFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAELIATNPDQFLQLL----- 317
Query: 323 GGEGNLGDQLAGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANY 380
G D L P Q+I VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+
Sbjct: 318 ---GEYADDDTPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANF 374
Query: 381 LLDH 384
L D
Sbjct: 375 LFDQ 378
>gi|195573349|ref|XP_002104656.1| GD21063 [Drosophila simulans]
gi|194200583|gb|EDX14159.1| GD21063 [Drosophila simulans]
Length = 288
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 169/392 (43%), Gaps = 107/392 (27%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQM-LIYQGKVLKDDTTL 60
MK+ ++ L + +E+ V +K ++ + +V AA+ + LIY G++++D L
Sbjct: 1 MKLSIRMLDQRTITLEMDESQEVRALKQRLG--KSPEVAMAAENLQLIYNGRIMEDAMPL 58
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTP--AATPATAPQTAVPIS 118
E ++AE+ +V+M G+ + P + APTP AA P +
Sbjct: 59 SEYRIAEDKIIVLM--------GKKRVIESPPE---EQVAPTPPLAAGPTV-------LR 100
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
TE AP+ AP V+ ++ MG G +
Sbjct: 101 TEDV-APSLAPNDQWVND-----------------------------LMSMGYG---EEE 127
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V ALRA++N+PERA+EYL +GIP++ A G AA
Sbjct: 128 VRSALRASFNHPERAIEYLINGIPQEV-------ASEQGLAA------------------ 162
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQ 298
+P+V + + L L P +R M+ NP+L+ ++ L +
Sbjct: 163 -------------VPNVQA----SEQLQHLLADPSITRMREMLNQNPELMHRLMDRLAET 205
Query: 299 NPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGF 358
+P + +Q DFL +I+ G +++ L I +T EE A+ RLEA+GF
Sbjct: 206 DPATFEALGSNQ-DFLNMIS-----GGARRTNEVGHL---EITLTAEEAAAVGRLEALGF 256
Query: 359 DRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+R + ++ + AC+K+E+LAA L+ E D
Sbjct: 257 ERVMAVQAYLACDKDEQLAAEILIRQSEEDRD 288
>gi|124359456|gb|ABN05900.1| Ubiquitin [Medicago truncatula]
Length = 674
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+MK+ VKTLKG+ F++ V P D++ VK IE +QG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 547 VMKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTL 606
Query: 61 EENKVAENSFVVIMLTK 77
+N+V+E+ F+V+ML+K
Sbjct: 607 ADNEVSEDGFLVVMLSK 623
>gi|357504021|ref|XP_003622299.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497314|gb|AES78517.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 398
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+MK+ VKTLKG+ F++ V P D++ VK IE +QG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 271 VMKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTL 330
Query: 61 EENKVAENSFVVIMLTK 77
+N+V+E+ F+V+ML+K
Sbjct: 331 ADNEVSEDGFLVVMLSK 347
>gi|353237727|emb|CCA69693.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Piriformospora indica DSM 11827]
Length = 408
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 118/211 (55%), Gaps = 12/211 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +KTL+ F V+V+PE TV +K KI G +P A Q LIY GKVL D ++
Sbjct: 1 MKITIKTLQQKLFTVDVEPEQTVQAIKEKINEEHG---HPVASQKLIYSGKVLDDAKVVK 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E F+V+M++K K ++ + + + + ++ PA PA + A+ +
Sbjct: 58 DCNFKEKDFLVLMVSKAKAAPAASTSAAASSSTSAPAAPAQPAQPPAASTSNAMDATPTT 117
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T A P PAS S ++ +A S ++ + G+ LE AIQ ++DMG ++R V R
Sbjct: 118 TTASNPQPASESTTAAAAAPGSD------TSFLTGSALETAIQGLMDMG---FERPQVER 168
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVAR 212
A+RA++NNP+RA +YL++GIP P AR
Sbjct: 169 AMRASFNNPDRAADYLFNGIPPGLLPTPAAR 199
>gi|341902355|gb|EGT58290.1| hypothetical protein CAEBREN_15682 [Caenorhabditis brenneri]
Length = 316
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 114/243 (46%), Gaps = 49/243 (20%)
Query: 160 EGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQA 219
E +I I+++G DR+ V LRAA + +RA YL++GIPE
Sbjct: 107 EESIAAIMEIGA---DREQAVAVLRAARWSRDRAAGYLFNGIPE---------------- 147
Query: 220 ANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRA 279
+S Q P P +P G D + A LD L N PQ + +R
Sbjct: 148 -DSVVQEPAPQEPRAEEQGGEAP---------AVDAEAEAQEHEDLDILANLPQLEEIRQ 197
Query: 280 MVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL------- 332
+VQ NP+ L P+LQ++ NP+LVR IQ +Q +F+ ++N G G L
Sbjct: 198 LVQQNPENLAPILQQIAAHNPRLVRTIQNNQQEFMDMLN-----GAGQYDQNLPGAGAGA 252
Query: 333 -------AGLMPQSIQVTPEEREAIERLEAM-GFDRAIVLEVFFACNKNEELAANYLLDH 384
G + + + E+ +AI R++A+ A V+E +FAC+++EE A N++ +
Sbjct: 253 AGAAAGGQGGRRRVVHLNQEQLDAINRIKAIVNASEATVVEAYFACDQDEEAAINFIFNT 312
Query: 385 MHE 387
M E
Sbjct: 313 MDE 315
>gi|403370790|gb|EJY85262.1| Ubiquitin [Oxytricha trifallax]
Length = 411
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 107/232 (46%), Gaps = 43/232 (18%)
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
RD + ALRAA+NNP+RA EYL SG+ +Q +A PG + A +
Sbjct: 147 RDQCILALRAAFNNPDRAFEYLLSGV----NLQALASQPGGQEGAGAGGDDMGDDYGDEE 202
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGS-LDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
SS P GAG+ L +P F ++R + +PQ Q + +
Sbjct: 203 GSSDP------------------FGGAGNPFAALAQNPNFALIRQRILQDPQFYQQFMSQ 244
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQ---------------- 338
L + PQL LIQ++ A F+ LI G+ N G
Sbjct: 245 LQQTQPQLFALIQQNPAAFMNLI----LAGDPNAGLAGMAGAGAGAGHAHGGAGGANPPG 300
Query: 339 SIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
SI+VT +E EAI RL ++GF + E +FAC+KNEELAANYL + E E+
Sbjct: 301 SIRVTQDEMEAINRLTSLGFPKHKAAEAYFACDKNEELAANYLFETGFEDEE 352
>gi|195144934|ref|XP_002013451.1| GL23402 [Drosophila persimilis]
gi|194102394|gb|EDW24437.1| GL23402 [Drosophila persimilis]
Length = 314
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 171/388 (44%), Gaps = 78/388 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ ++TL +E+ V +K ++ ++ G + Q LIY G++++D L
Sbjct: 1 MKLSIRTLDQRVITLEMDEGQNVLALKKRLVSMPGISQSVDSLQ-LIYGGRIMEDGLPLS 59
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E K+AE+ F+V+M G + TK P A+ AT +A ++
Sbjct: 60 EYKIAEDKFLVMM----------GKQKVQQVTKVELEKKPKETASAATGAGSA---TSGD 106
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T A T A + +S A +E +Q+++ MG ++ V
Sbjct: 107 TGAETYATGGGNPTSSVAPNEE------------------MVQRLMGMG---YEEMPVRA 145
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
AL A++N+PE A+EYL + IP +A +SG
Sbjct: 146 ALSASFNHPELAIEYLIAQIPSEA-------------------------------ASG-T 173
Query: 242 ANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQ 301
A+P+ + P S A A +L L + P+F +R M+ NP L+ +L ++ NP+
Sbjct: 174 ASPVSVSP-------SVAEMAVNLAPLMSDPRFAQVREMILQNPDQLEAILGQMSGSNPE 226
Query: 302 LVRLIQEHQADFLRLINE--PVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
+ ++ H +F+ L+N V + Q Q +T E A++RL A+GF
Sbjct: 227 VFEALRNHHGEFVDLLNYDLSVLSDDDEFPQQADS--AQQTPLTAAEAAAVDRLTALGFQ 284
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHE 387
+ ++V+ ACNKNEELAA+ L E
Sbjct: 285 HDLAVQVYLACNKNEELAADVLFRQSEE 312
>gi|402087037|gb|EJT81935.1| UV excision repair protein Rad23 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 377
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 82/124 (66%), Gaps = 10/124 (8%)
Query: 263 GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ 322
G+LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NPQL +LI + FL L+ E
Sbjct: 253 GNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPEQFLGLLGEDA- 311
Query: 323 GGEGNLGDQLAGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANY 380
D L P Q+I VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+
Sbjct: 312 -------DDDVPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANF 364
Query: 381 LLDH 384
L D
Sbjct: 365 LFDQ 368
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 84/208 (40%), Gaps = 41/208 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F +EV+P D V VK KI +G D P Q+ LIY +
Sbjct: 1 MKVTFKDLKQQKFVIEVEPTDLVSAVKQKISEERGWD--PKLQK-LIYSAQA-------N 50
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + V+ + G GS R ++ S P P+
Sbjct: 51 PGRRSPRRRVLQVGGTTGDARGPGSGRHPRGSR----SGPRPSGP--------------- 91
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
A + + + G Y + + L G + AI + MG ++R +
Sbjct: 92 --------AVPATPTPPQREQPGQY-NDPNMLSTGAARDEAIANMEAMG---FERSQIDA 139
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQP 209
A+RAA+ NP+RAVEYL +GIP+ P
Sbjct: 140 AMRAAFFNPDRAVEYLLNGIPDNLRQNP 167
>gi|224003975|ref|XP_002291659.1| Rad23 like protein [Thalassiosira pseudonana CCMP1335]
gi|220973435|gb|EED91766.1| Rad23 like protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 265 LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG 324
LD LR+ PQF LR +VQ NP LQ +L ++G+Q P L++ I +QA+FL+++NEP+
Sbjct: 216 LDALRSHPQFDDLRRLVQTNPSTLQAVLSQIGQQQPDLLQAINANQAEFLQMMNEPMISA 275
Query: 325 ---EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYL 381
E + Q ++++ EE A++RL MGFDR+ + + AC+KNE LAAN L
Sbjct: 276 MPQEQVQQYMNMAMQAQVLRLSEEEMAAVDRLTEMGFDRSEAAQAYLACDKNEALAANLL 335
>gi|403418377|emb|CCM05077.1| predicted protein [Fibroporia radiculosa]
Length = 214
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 42/218 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTL+ F ++ + DTV D+K KI+ QG + Q LIY GK+L D T+E
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVADLKKKIQDNQG---HTIESQKLIYSGKILPDSKTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPT---GEGSTRSTAPTKAPQSSAPTPAATPATAPQTA---- 114
++ E F+V+M++K K T ++ S A T +P A + +
Sbjct: 58 SCEIKEKDFLVLMVSKPKNVTNLPAASTSTSIAATSSPAPVPAPAPAPQPVSEPPSVPSA 117
Query: 115 -------------VPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEG 161
P +P APT A + +++ + G L+
Sbjct: 118 PSPAPQPPNAPILTPAQAQPIAAPTTEQA----------------FNDSNSFLTGEALQS 161
Query: 162 AIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199
IQ +++MG ++RD V+RALRA++NNP+RAVEYL++
Sbjct: 162 TIQNMMEMG---FERDQVMRALRASFNNPDRAVEYLFN 196
>gi|402224231|gb|EJU04294.1| UV excision repair protein Rad23 [Dacryopinax sp. DJM-731 SS1]
Length = 411
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 76/133 (57%), Gaps = 16/133 (12%)
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEH----------QADFLRLI 317
RNSP F +R M+ NP L+QP++Q+L NPQL +++ ++ +
Sbjct: 285 FRNSPMFTQIRQMIAQNPALVQPLIQQLAATNPQLAQVMNQNPQLLLQLLAGEEGEGDEG 344
Query: 318 NEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELA 377
E GEG + G+ +IQVTPEE AIERL +GF R + ++ +FAC+KNEE+A
Sbjct: 345 MEWEGDGEGGV----PGVT--TIQVTPEENAAIERLIGLGFPRDLAIQAYFACDKNEEVA 398
Query: 378 ANYLLDHMHEFED 390
ANYL D+ E D
Sbjct: 399 ANYLFDYAFEQND 411
>gi|71410028|ref|XP_807329.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70871306|gb|EAN85478.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 161/374 (43%), Gaps = 64/374 (17%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI ++++ G+ EV P+ V VK +E D Y L Y G +L++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNVETVKKFLE-----DEYNTDSLRLCYNGAILENSKTMT 55
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E V EN+ V ++ NKR P P +SAP PQT S EP
Sbjct: 56 ELGVKENA--VFIIAGNKR-------NKNKPQAKPATSAP--------PPQTKTNSSFEP 98
Query: 122 TP--------APTPAPASASVSSVSATSESGVYGHAASNLVA---GNNLEGAIQQILD-- 168
T A T S + + +ES + A G L G ++D
Sbjct: 99 TSVGRGQWEGAITDPATSGAGGAPGGIAESRQGAEPPPSEAAPSQGLALHGIDPTLVDNI 158
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ 228
+ G DR+ V ALRAAY NP+RAVE+L +GIP Q N P P
Sbjct: 159 IAMGFEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL-----------QRMNEPAINPS 207
Query: 229 PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
SS ++ D + S +A + L PQF +R++VQANP+ L
Sbjct: 208 -------ASSERMSSLTDRLTSHMRQDDSDSA---LYNALMQIPQFGEIRSIVQANPESL 257
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAG---LMPQSIQV--T 343
++Q+L +P+++ LIQ+ FLR++ P G+ G + P S+ +
Sbjct: 258 PTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNP---GQTEFTTSTGGGVDVPPDSVSIPLR 314
Query: 344 PEEREAIERLEAMG 357
EER A++RL +G
Sbjct: 315 EEERVAVQRLVELG 328
>gi|154342013|ref|XP_001566958.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064283|emb|CAM40483.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 433
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 118/437 (27%), Positives = 179/437 (40%), Gaps = 85/437 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KT+ G +V+V+ T+ DVK + D Y A L + G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLL-----VDEYEPASLRLCFNGAVLEDSKILA 55
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTK---APQSSAPTPAATPATAPQTAVPIS 118
+ V +N F+V+ K K P S S P K AP+ SAP A TAP A+P S
Sbjct: 56 DAGVKDNDFLVLAGRKRKIPK-PASMPSAEPQKTEAAPEFSAPLSA----TAPPPAMPTS 110
Query: 119 TEPTPAPTPAPASASV------------------------------SSVSATSESGVYGH 148
T + + A A S++ S + +YG
Sbjct: 111 ASTTTSTADSAAPAVPAATTAPATAPAPAPAPAPAPAPVAPTPPAGSAIPVASAASIYG- 169
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A NL I ++ MG DR+ + ALRAA+ N +RAVEYL+ GIP
Sbjct: 170 VAPNL---------IDEVAAMG--FEDRNQIALALRAAFMNVDRAVEYLFDGIPPHL--- 215
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFL 268
V +G A P SS A P+ A + D L
Sbjct: 216 -VEELTSHGLPAAPAEAPRASN---PSASSATAAVPVST--SLASAATLSTAASEMRDAL 269
Query: 269 RNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN- 327
PQF +R + N L ++Q++ ++P + I+ + FL ++ E Q G N
Sbjct: 270 SRIPQFDEIRTLYNQNTDTLPVVMQQIALRHPAVYEQIERNPEVFLSIMGEAGQPGTSNA 329
Query: 328 -------------LGDQLAGLMPQSIQ----VTPEEREAIERLEAMG---FDRAIVLEVF 367
+GD G +Q +T E+R A+++L +G +D + V+
Sbjct: 330 PPGSVASPTAEAVVGDTEEGSFMNELQAGVELTAEDRMAVQQLVELGGGMWDEQSAVLVY 389
Query: 368 FACNKNEELAANYLLDH 384
A +N+E+AA+ L +H
Sbjct: 390 LATQRNQEVAASVLFEH 406
>gi|302680567|ref|XP_003029965.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
gi|300103656|gb|EFI95062.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
Length = 383
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN 327
L+++PQ LR +VQ NP L+QP++Q+L + NP + + I +H ++L+ +G+
Sbjct: 262 LQSNPQIAQLRELVQQNPALVQPLVQQLAQSNPAIAQAIIQHPEAIMQLLGVDGDDFDGD 321
Query: 328 LGDQLAGLMP----QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLD 383
+ P + VT EE+ AI+RLEAMGF R V+E +FAC+KNEELAANYL D
Sbjct: 322 -----DDMNPPPGTHVMHVTEEEQAAIQRLEAMGFPRQKVIEAYFACDKNEELAANYLFD 376
Query: 384 HMHEFED 390
+ E +D
Sbjct: 377 NGFEDDD 383
>gi|407851853|gb|EKG05558.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 155/376 (41%), Gaps = 68/376 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI ++++ G+ EV P+ V VK +E D Y L Y G + ++ T+
Sbjct: 1 MKIILRSIVGSEQVREVTPDTNVETVKKFLE-----DEYNTDSLRLCYNGAIPENSKTMT 55
Query: 62 ENKVAENSFVVIMLTKNKR------------PTGEGSTRSTAPTKAPQSSAPTPAATPAT 109
E V EN+ +I K + P + S PT PAT
Sbjct: 56 ELGVKENAVFIIAGNKRNKNKPQAKPATSLPPPQAKTNSSFEPTSVGHGQGEGAITEPAT 115
Query: 110 APQTAVPIS-TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILD 168
+ P TEP P P+ + S G+ H + N I+
Sbjct: 116 SGAGGAPGGITEPRQGAEPPPSEEAPSQ-------GLALHGVDPTLVDN--------IIA 160
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ 228
MG DR+ V ALRAAY NP+RAVE+L +GIP Q N P P
Sbjct: 161 MG--FEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL-----------QRMNEPAINPS 207
Query: 229 PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
SS ++ D + S +A + L PQF +R++VQANP+ L
Sbjct: 208 -------ASSERMSSLTDRLTSHMRQDDSDSA---LYNALMQIPQFGEIRSIVQANPESL 257
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ-------GGEGNLGDQLAGLMPQSIQ 341
++Q+L +P+++ LIQ+ FLR++ P Q GG G++ SI
Sbjct: 258 PTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNPGQTEFTTSTGGGGDVPPDSV-----SIP 312
Query: 342 VTPEEREAIERLEAMG 357
+ EER AI+RL +G
Sbjct: 313 LREEERVAIQRLVELG 328
>gi|159475896|ref|XP_001696050.1| hypothetical protein CHLREDRAFT_80907 [Chlamydomonas reinhardtii]
gi|158275221|gb|EDP00999.1| predicted protein [Chlamydomonas reinhardtii]
Length = 370
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 7/127 (5%)
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLIN-------EP 320
LRN+P F +LRA V +P+ L P+LQ+LG+ NP+LV++I +HQ FL ++ +
Sbjct: 244 LRNNPAFGMLRAAVAQDPRALVPLLQQLGRTNPELVQVINQHQQAFLAMLTEAGDDDEDD 303
Query: 321 VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANY 380
++++P++ AI RL A+GFDR LE + AC++NEE+AAN+
Sbjct: 304 AMAALLGGAGGGGEGGGMVVELSPDDEAAIGRLAALGFDRNACLEAYLACDRNEEMAANF 363
Query: 381 LLDHMHE 387
L ++M +
Sbjct: 364 LAENMFD 370
>gi|440791110|gb|ELR12364.1| UBA/TSN domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 305
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 40/220 (18%)
Query: 171 GGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPT 230
G ++++ +VRALR A N+ + A + L SG R +A+N M
Sbjct: 119 GMGFEQEQIVRALRLARNDLQNACDLLLSG---------AQRTDPQQEASNL---MSDLI 166
Query: 231 QPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQP 290
Q +S P A +++ PQFQ +R+++Q P L
Sbjct: 167 QRMGQQNSDPQAQ---------------------FEWVVQQPQFQRIRSLLQTRPDLFAA 205
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGD------QLAGLMPQSIQVTP 344
+L +LG NPQL LI ++QA+FL +N+ +GG+G+ D G + Q++
Sbjct: 206 LLTQLGGSNPQLHELISQNQAEFLEWLNDE-EGGDGDGSDIAVVQTGGGGGGGAAAQLSQ 264
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+ +I RL +GF R +V + + AC KNEE+AANYL ++
Sbjct: 265 RDESSITRLMELGFGRDVVRQAYLACGKNEEMAANYLFEN 304
>gi|71416587|ref|XP_810308.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70874820|gb|EAN88457.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 159/376 (42%), Gaps = 68/376 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI ++++ G+ EV P+ + VK +E D Y L Y G + ++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNIETVKKFLE-----DEYNTDSLRLCYNGAIPENSKTMT 55
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP---TKAPQSSAPTPAA---------TPAT 109
E V EN+ +I K + + ++ P TK S PT PAT
Sbjct: 56 ELGVQENAVFIIAGNKRNKNKPQAKPATSVPPPQTKTNSSFEPTSVGHGQGEGAITEPAT 115
Query: 110 APQTAVPIS-TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILD 168
+ TEP P P+ A+ S G+ H + N I+
Sbjct: 116 SGAGGASGGITEPQQGAEPPPSEAAPSQ-------GLALHGVDPTLVDN--------IIA 160
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQ 228
MG DR+ V ALRAAY NP+RAVE+L +GIP Q N P P
Sbjct: 161 MG--FEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL-----------QRMNEPAINPS 207
Query: 229 PTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
SS ++ D + S +A + L PQF +R++VQANP+ L
Sbjct: 208 -------ASSERMSSLTDRLTSHMRQDDSDSA---LYNALMQIPQFGEIRSIVQANPESL 257
Query: 289 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ-------GGEGNLGDQLAGLMPQSIQ 341
++Q+L +P+++ LIQ+ FLR++ P Q GG G++ SI
Sbjct: 258 PTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNPGQTEFTTSTGGGGDVPPDSV-----SIP 312
Query: 342 VTPEEREAIERLEAMG 357
+ EER AI+RL +G
Sbjct: 313 LREEERVAIQRLVELG 328
>gi|238582807|ref|XP_002390045.1| hypothetical protein MPER_10744 [Moniliophthora perniciosa FA553]
gi|215452995|gb|EEB90975.1| hypothetical protein MPER_10744 [Moniliophthora perniciosa FA553]
Length = 151
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 75/126 (59%), Gaps = 14/126 (11%)
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN 327
LRN+PQ Q LR + +P+ Q ++Q+L Q PQL++ ++ F+RL++ Q
Sbjct: 35 LRNNPQIQQLREHIAQHPESAQALIQQLAAQYPQLIQTFAQNPDAFIRLLDLDPQS---- 90
Query: 328 LGDQLAGLMPQS---IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+ PQ I VT EER AIERLEA GF R VLE + AC+K+E +AANYL +H
Sbjct: 91 -------MAPQGSHVISVTEEERAAIERLEAFGFPRHKVLEAYLACDKDETMAANYLFEH 143
Query: 385 MHEFED 390
+E +D
Sbjct: 144 GYEDDD 149
>gi|240256296|ref|NP_197113.4| uncharacterized protein [Arabidopsis thaliana]
gi|332004862|gb|AED92245.1| uncharacterized protein [Arabidopsis thaliana]
Length = 171
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Query: 292 LQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIE 351
L+E+ KQNP L ++I+ + A F+ ++N+ + L L+ +QVT + EAI
Sbjct: 79 LEEMEKQNPPLFQMIRHNSAGFVPVLNKESFERDNELAQPEEDLL--QLQVTAVDDEAIN 136
Query: 352 RLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMH 386
RLEAMGF+R +VLEVF ACNKNE+LAAN+LLDH+H
Sbjct: 137 RLEAMGFERRVVLEVFLACNKNEQLAANFLLDHIH 171
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 59/76 (77%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG F++EVKP D+V +VK IETV G+ YPAAQQ+LI++ + L+D+TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 62 ENKVAENSFVVIMLTK 77
NKV + S + I++TK
Sbjct: 61 ANKVFDKSVIAIIITK 76
>gi|408389579|gb|EKJ69020.1| hypothetical protein FPSE_10799 [Fusarium pseudograminearum CS3096]
Length = 115
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 65/102 (63%), Gaps = 10/102 (9%)
Query: 285 PQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQV 342
PQ+L+P+LQ+LG NPQL LI + FL+L+ G D L P Q+I V
Sbjct: 12 PQMLEPILQQLGAGNPQLAELIASNPDQFLQLL--------GEYADDDVPLPPGAQAISV 63
Query: 343 TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
T EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 64 TEEERDAIERLCRLGFDRDAAIQAYFACDKNEELAANFLFDQ 105
>gi|281207509|gb|EFA81692.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 124
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 77/130 (59%), Gaps = 19/130 (14%)
Query: 259 AAGAGS---LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLR 315
A G G + LRN+P F +LR +Q NP ++ +LQ+ + NP LVR I E+ +FLR
Sbjct: 4 AEGTGEPNIFEALRNNPHFPMLRETIQRNPAVIPELLQQFSQTNPGLVRQITENPQEFLR 63
Query: 316 LINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM-GFDRAIVLEVFFACNKNE 374
L EP Q +IQV+ EEREAIERL + G ++A V+E +FAC+K+E
Sbjct: 64 LFQEPQQV---------------AIQVSQEEREAIERLILLTGLEKAEVVEAYFACDKDE 108
Query: 375 ELAANYLLDH 384
+L A+YL +
Sbjct: 109 QLTASYLFER 118
>gi|312382824|gb|EFR28136.1| hypothetical protein AND_04281 [Anopheles darlingi]
Length = 273
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 46/228 (20%)
Query: 178 TVVRALRAAYNNPERAVEYLYSG--------IPEQAEVQPVARAPGNGQAANSPTQMPQP 229
+V+ AL NN E AVEYL + +Q+ P A PG G
Sbjct: 77 SVIVALEICSNNREAAVEYLMDNAADMAVDLLEQQSAETPAASVPGIG------------ 124
Query: 230 TQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGS---LDFLRNSPQFQVLRAMVQANPQ 286
SG A PD+ A GA + L FLR +P F ++ ++Q +P
Sbjct: 125 -------VSGLQA----------PDMAVAAGGARNERPLAFLRGNPVFFEMKRLLQEDPS 167
Query: 287 LLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQ----LAGLMPQSIQV 342
LL ++Q + NP L+R+I E+Q +FL +INE + N Q +A M S+
Sbjct: 168 LLPYLMQRIQYSNPNLMRIISENQEEFLAMINENSELAPDNREAQELESIAAAMVNSL-- 225
Query: 343 TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
TP + +AI+RL+A+G+ +V++ + AC ++E AA +L+ E ED
Sbjct: 226 TPSDMDAIDRLKALGYPEHLVIQAYIACERDEYKAAEFLVSQNLEDED 273
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 2 MKIFVKTLKGTSFDVEVKPE-DTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
MKI +KTLK +F VEV E DTV +K KI + G YP +Q LIY GKV++D L
Sbjct: 1 MKITLKTLKQQTFHVEVDVEKDTVRMLKEKIFSESGQ-AYPVERQWLIYLGKVMEDSHPL 59
Query: 61 EENKVAENSFVV----------IMLTKNKRPTGEGSTRSTAPTKA----PQSSAPTPAAT 106
+ + + FV+ + + N R A A Q SA TPAA+
Sbjct: 60 SQYNLDDKKFVMGYPEVSVIVALEICSNNREAAVEYLMDNAADMAVDLLEQQSAETPAAS 119
>gi|9755819|emb|CAC01850.1| putative protein [Arabidopsis thaliana]
Length = 142
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 59/76 (77%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG F++EVKP D+V +VK IETV G+ YPAAQQ+LI++ + L+D+TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 62 ENKVAENSFVVIMLTK 77
NKV + S + I++TK
Sbjct: 61 ANKVFDKSVIAIIITK 76
>gi|443716613|gb|ELU08047.1| hypothetical protein CAPTEDRAFT_227723 [Capitella teleta]
Length = 335
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 82/148 (55%), Gaps = 29/148 (19%)
Query: 258 GAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLI 317
AG L FLR++PQF+ +R +VQ+NP LL LQE+ + NP+L ++I E+Q F++++
Sbjct: 185 STAGEDPLHFLRSTPQFETMRRLVQSNPGLLSNFLQEIRQANPRLFQMINENQERFVQML 244
Query: 318 NEPV---------------QG----GEGNLGDQLAGLMPQ----SIQVTPEEREAIERLE 354
N+P QG G G G PQ IQVTPEE++AIER
Sbjct: 245 NDPNLETSGGSSAGGQSQPQGTPGSASGVAGSGGGGGGPQMGEGYIQVTPEEKQAIER-- 302
Query: 355 AMGFDRAIVLEVFFACNKNEELAANYLL 382
+ E +FAC KNE+LAAN+LL
Sbjct: 303 ----SFRLPREAYFACEKNEDLAANFLL 326
>gi|146094144|ref|XP_001467183.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
gi|134071547|emb|CAM70236.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
Length = 429
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 115/424 (27%), Positives = 184/424 (43%), Gaps = 63/424 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KT+ G +V+V+ T+ DVK +E D Y A L + G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTK--APQSSAPTPAATPATA--------- 110
+ V +N +V+ K K P + P AP+SSAP +ATP A
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAEPPKTEAAPESSAPASSATPPAAMPTPALTTT 115
Query: 111 PQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMG 170
+ +P PA A+A + V++T+ + AAS A N ++ I ++
Sbjct: 116 TPATSAATVDPPAPAVPASAAAPSAPVASTTPAASAVPAASAASATNTYGVSLNLIDEVA 175
Query: 171 G-GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ--AEVQPV------ARAPGNGQAAN 221
G DR+ + ALRAA+ N ERAVEYL+ GIP E+ P A APG +
Sbjct: 176 SMGFEDRNQIALALRAAFMNVERAVEYLFEGIPPHLVEELTPFSALTAPAAAPGASNPSA 235
Query: 222 SPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMV 281
S P +P P V A + L PQF +R +
Sbjct: 236 SSAAAAVPASDSPA-----------------PAVAPSTAESEMRAALSRIPQFDEIRILY 278
Query: 282 QANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG--------------GEGN 327
N L ++Q++ ++P + I+ FL ++ E Q +
Sbjct: 279 NQNTDTLPVVMQQIALRHPAVYEQIERDPEVFLSIMGESGQPGSASAPAGPAALSTAQAV 338
Query: 328 LGD-QLAGLMPQ---SIQVTPEEREAIERLEAMG---FDRAIVLEVFFACNKNEELAANY 380
+GD + + M Q +++T E+R A+++L +G +D + V+ A +N+E+AA+
Sbjct: 339 VGDAEESSFMNQLQSGLELTAEDRTAVQQLVELGGGMWDEQSAVLVYLATQRNQEVAASV 398
Query: 381 LLDH 384
L +H
Sbjct: 399 LFEH 402
>gi|389633979|ref|XP_003714642.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|351646975|gb|EHA54835.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|440474553|gb|ELQ43290.1| hypothetical protein OOU_Y34scaffold00162g59 [Magnaporthe oryzae
Y34]
gi|440479744|gb|ELQ60492.1| hypothetical protein OOW_P131scaffold01287g24 [Magnaporthe oryzae
P131]
Length = 401
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 81/119 (68%), Gaps = 10/119 (8%)
Query: 263 GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ 322
G+LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NPQL +LI ++ FL L+ E
Sbjct: 278 GNLDFLRNNTQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAQNPEQFLALLGED-- 335
Query: 323 GGEGNLGDQLAGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
D+ A L P Q+I VT EER+AIERL +GF R ++ +FAC+KNEELAAN
Sbjct: 336 ------ADEDAPLPPGAQAIAVTEEERDAIERLCRLGFGREQAIQAYFACDKNEELAAN 388
>gi|116207852|ref|XP_001229735.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
gi|88183816|gb|EAQ91284.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
Length = 392
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
+L++LR + QFQ LR +VQ PQ+L+P+LQ+LG NPQL +LI ++ FL L++E
Sbjct: 267 NLEWLRANAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAQNPDQFLSLLSE---- 322
Query: 324 GEGNLGDQLAGLMP--QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYL 381
+ GD A L P I VT EER+AIERL +GF + ++ +FAC+KNEELAAN+L
Sbjct: 323 ---SGGDDDAPLPPGAHQISVTEEERDAIERLTRLGFTQDQAIQAYFACDKNEELAANFL 379
Query: 382 LDHMHEFED 390
D + ED
Sbjct: 380 FDQPDDDED 388
>gi|241950849|ref|XP_002418147.1| UV excision repair protein, putative [Candida dubliniensis CD36]
gi|223641486|emb|CAX43447.1| UV excision repair protein, putative [Candida dubliniensis CD36]
Length = 430
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 7/203 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I K K + ++V+ D+V K K+ +G D ++Q L+Y GKVL+DD LE
Sbjct: 1 MQIVFKDFKKQTVTLDVELTDSVLSTKEKLAQEKGCD---SSQIKLVYSGKVLQDDKNLE 57
Query: 62 ENKVAENSFVVIMLTKNKR-PTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
K+ E + ++ M+ K K+ PT T+ST + + + + +T+ T+ +T
Sbjct: 58 SYKLKEGASIIFMINKTKKTPTPVPETKSTTESTSQEQVQAQGSTNESTSSSTSSTTTTT 117
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
A A A+++ ++ ++ + S G+ E +IQ I++MG ++R V
Sbjct: 118 AAAAAAAAGAASTGTTTTSEQQPEQAVSNESTFAVGSEREASIQNIMEMG---YERPQVE 174
Query: 181 RALRAAYNNPERAVEYLYSGIPE 203
ALRAA+NNP RAVEYL +GIPE
Sbjct: 175 AALRAAFNNPHRAVEYLLTGIPE 197
>gi|340054316|emb|CCC48612.1| putative UV excision repair RAD23 protein, fragment, partial
[Trypanosoma vivax Y486]
Length = 299
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 145/317 (45%), Gaps = 45/317 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +K + G + EV E TV D+K +E D Y + Y +VL+D T+E
Sbjct: 1 MRVILKGIDGIKHEYEVAAEATVHDIKKLME-----DEYTLESLRICYDNRVLEDSMTME 55
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + + +V + K+++ T ST + TK + SA A++ + V + + P
Sbjct: 56 GLGMRDRTVLVFVGRKHEKKTM--STATDVATKPSEGSARVSASSQSGQ----VNVESVP 109
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
T P S + + SA+S +N + I ++ MG DR V
Sbjct: 110 QSTATEVPQSVAHNPPSASS-------TETNPMLRGVDPALIDTVVSMG--FEDRTQVAL 160
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQM-PQPTQPAPVTSSGP 240
ALRAAY N +RAVE+L SGIP E R G +S M P P+ AP
Sbjct: 161 ALRAAYMNVDRAVEFLCSGIPSNVE-----RDLGPVFHDDSQHGMFPIPSSMAPAA---- 211
Query: 241 NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP 300
P GSG+A +L + P+F+ +R +V+ANPQ + +Q+L P
Sbjct: 212 ------------PTEGSGSALEQALMAV---PRFEEIREIVRANPQAIASAVQQLQLHYP 256
Query: 301 QLVRLIQEHQADFLRLI 317
+ RL+Q++ +F ++
Sbjct: 257 DIARLVQQNPQEFATIM 273
>gi|62362186|gb|AAX81530.1| RAD23B-like protein [Adineta ricciae]
Length = 244
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 125/290 (43%), Gaps = 49/290 (16%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL F +E + DTV +K KI D Y A LI+ GK+L+D TLE
Sbjct: 1 MQLQIKTLSNEKFAIECELSDTVRTIKEKIAAKDLKDKYEADAVKLIFSGKILEDSKTLE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ +SF+V++ +P + + AP+ S A + T +
Sbjct: 61 FYSITSDSFLVVVKQAPTKPQAGSAAAAAAPSNP--SGAASAQTRTPTVATPTPAPAAPQ 118
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
PAPAS + + S S ++ + E A++++ DMG +DR
Sbjct: 119 QQPTRPAPASGTTPAASQDS-----------FLSAESREKALRELTDMG---FDRAQAEL 164
Query: 182 ALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAP--GNGQAANSPTQMPQPTQPAPVTSS 238
ALRA++ + ERA EYL +G IP +E P A P G+GQ T S
Sbjct: 165 ALRASFYHVERAAEYLITGNIPNISE--PSAANPEGGSGQ-----------------TPS 205
Query: 239 GPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLL 288
G ++ G G L L SPQFQ LR ++Q NP L
Sbjct: 206 GSESS-----------TGGRRGGEDDLVELSQSPQFQALRQLIQQNPDQL 244
>gi|72390575|ref|XP_845582.1| UV excision repair RAD23 protein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358793|gb|AAX79246.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei]
gi|70802117|gb|AAZ12023.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328991|emb|CBH11969.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 356
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 172/405 (42%), Gaps = 81/405 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +K++ G + EV P+ V D+K +E+ Y L Y +VL+D T+E
Sbjct: 1 MRIILKSVLGKKREHEVSPDTKVEDIKKFLESE-----YTPQSLRLCYNNRVLEDPMTME 55
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA-----TPATAPQTAVP 116
+ + E++ +V + K+ + + + +P + A PA P A ++VP
Sbjct: 56 QLGIGEDTVIVYV---GKKQSVQQLASKSGGCASPSAPAEGPAKGELNENPGVAGASSVP 112
Query: 117 ISTEPTPAPTP---APASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGT 173
+ PAP+P APA+ S G A ++L + + I I+ MG
Sbjct: 113 VDV---PAPSPSAQAPATTQQPS----------GPAPASLRSVD--PALIDSIVAMGFN- 156
Query: 174 WDRDTVVRALRAAYNNPERAVEYLYSGIP---EQAEVQPVARAPGNGQAANSPTQMPQPT 230
DR+ V ALRAAY N +RAVE+L +GIP +Q + +A G+AA
Sbjct: 157 -DREQVSLALRAAYMNADRAVEFLCTGIPPHVQQQLAEADLQASAMGRAA---------- 205
Query: 231 QPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQP 290
P + P+ D GSG + L P R+++Q NPQ
Sbjct: 206 --VPSAGTPPS------------DAGSGGTQSDLRRALSAIPHIDDFRSLLQNNPQAFSA 251
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLI----------NEPVQGGEGNLGDQLAGLMPQSI 340
+ +L + PQ+ L Q+ +F R + V GE + D +
Sbjct: 252 LAGQLLENFPQVGELAQQDPEEFARFMMAGSVPDNADQTLVTAGETEVDD--------AQ 303
Query: 341 QVTPEEREAIERLEAMG---FDRAIVLEVFFACNKNEELAANYLL 382
+ E+R A+ RL +G + E + C + E+ AA++LL
Sbjct: 304 PLGEEDRAAVNRLVLLGEGAWGEREATEAYRMCGRREDAAAHFLL 348
>gi|398019764|ref|XP_003863046.1| UV excision repair RAD23-like protein [Leishmania donovani]
gi|322501277|emb|CBZ36356.1| UV excision repair RAD23-like protein [Leishmania donovani]
Length = 429
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 112/418 (26%), Positives = 181/418 (43%), Gaps = 51/418 (12%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KT+ G +V+V+ T+ DVK +E D Y A L + G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTK--APQSSAPTPAATPATA--------- 110
+ V +N +V+ K K P + P AP+SSAP +ATP A
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAEPPKTEAAPESSAPASSATPPAAMPTPALTTT 115
Query: 111 PQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMG 170
+ +P PA A+A + V++T+ + AAS A N ++ I ++
Sbjct: 116 TPATSAATVDPPAPAVPASAAAPSAPVASTTPAASAVPAASAASATNTYGVSLNLIDEVA 175
Query: 171 G-GTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ--AEVQPVARAPGNGQAANSPTQMP 227
G DR+ + ALRAA+ N ERAVEYL+ GIP E+ P + A +
Sbjct: 176 SMGFEDRNQIALALRAAFMNVERAVEYLFEGIPPHLVEELTPFSALAAPAAAPGASNPSA 235
Query: 228 QPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQL 287
A S P P V A + L PQF +R + N
Sbjct: 236 SSAAAAVPASDSPA-----------PAVAPSTAESEMRAALSRIPQFDEIRILYNQNTDT 284
Query: 288 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG--------------GEGNLGD-QL 332
L ++Q++ ++P + I+ FL ++ E Q + +GD +
Sbjct: 285 LPVVMQQIALRHPAVYEQIERDPEVFLSIMGESGQPGSASAPAGPAAPSTAQAVVGDAEE 344
Query: 333 AGLMPQ---SIQVTPEEREAIERLEAMG---FDRAIVLEVFFACNKNEELAANYLLDH 384
+ M Q +++T E+R A+++L +G +D + V+ A +N+E+AA+ L +H
Sbjct: 345 SSFMNQLQSGLELTAEDRTAVQQLVELGGGMWDEQSAVLVYLATQRNQEVAASVLFEH 402
>gi|224587227|gb|ACN58624.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 102
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 73/105 (69%), Gaps = 12/105 (11%)
Query: 294 ELGKQNPQLVRLIQEHQADFLRLINEPVQGGE-------GNLGDQLAGLMP-QSIQVTPE 345
+LG++NPQL++ I ++Q F++++NEP GE G+LG + P IQVTP+
Sbjct: 1 QLGRENPQLLQQISQYQELFIQMLNEP--AGEVGDVPEVGDLGAAVEEGAPVNYIQVTPQ 58
Query: 346 EREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
E+EAIERL+A+GF A+V++ +FAC KNE LAAN+LL+ FED
Sbjct: 59 EKEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQG--FED 101
>gi|145538419|ref|XP_001454915.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422692|emb|CAK87518.1| unnamed protein product [Paramecium tetraurelia]
Length = 331
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 38/200 (19%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +KTL G +FD+EV+P +TV ++K KIE + + AQQ L+ +G +L+++ T+
Sbjct: 1 MKIIIKTLSGQTFDIEVQPTETVLNIKEKIEQ---NKQFEIAQQKLLRKGTLLQNEQTVA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
E + E F+V+M+ K G + + Q P P A +P
Sbjct: 58 ELGLQEKDFLVVMVNVKK-----GPPQQQPVQQQVQQPPQQPQPVQPQQPIQAF----KP 108
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
AP P N+V G+ + AIQ ++ MG + +
Sbjct: 109 VVAPAP-----------------------QNMVTGSEYDAAIQNLIQMG---FAKSECEA 142
Query: 182 ALRAAYNNPERAVEYLYSGI 201
A++AAYNNP+RA+EYL +GI
Sbjct: 143 AMKAAYNNPDRAIEYLLNGI 162
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 274 FQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLA 333
Q LR NP+ + +L +L + NPQL + IQ++ ++LI QGGE
Sbjct: 185 LQQLREQFIQNPEAILQLLPQLQQTNPQLYQQIQQNPEALVQLILGGHQGGED------- 237
Query: 334 GLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLD 383
++T EE + + +L MGF + LE F AC+KN E AA+YL +
Sbjct: 238 ---EIETEITQEEEQQLNQLIMMGFTKEDALEGFLACDKNVETAASYLFE 284
>gi|390602258|gb|EIN11651.1| UV excision repair protein Rad23 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 399
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 6/113 (5%)
Query: 275 QVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAG 334
Q LR +V NP LLQ ++Q+L + NP+L + + L+++ G EG LGD G
Sbjct: 285 QQLRELVAQNPALLQGLIQQLAENNPELANQLANNPEMLLQVL--AAAGAEG-LGDDDEG 341
Query: 335 LMP---QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384
+P Q +Q+T EE ++++RLE +GF R VLE + AC+KNEELAANYL ++
Sbjct: 342 PLPPGAQVVQLTQEEMQSVQRLEQLGFSRQAVLEAYLACDKNEELAANYLFEN 394
>gi|367049660|ref|XP_003655209.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
gi|347002473|gb|AEO68873.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 82/123 (66%), Gaps = 10/123 (8%)
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
+L+FLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI ++ FL+L++E
Sbjct: 265 NLEFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPHLAQLIAQNPEQFLQLLSES--- 321
Query: 324 GEGNLGDQLAGL--MPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYL 381
GD A L Q I VT EER+AIERL +GF + ++ +FAC+KNEELAAN+L
Sbjct: 322 -----GDDDAPLPHGAQQISVTEEERDAIERLVRLGFTQDQAIQAYFACDKNEELAANFL 376
Query: 382 LDH 384
D
Sbjct: 377 FDQ 379
>gi|238567698|ref|XP_002386292.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
gi|215437819|gb|EEB87222.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
Length = 161
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 33/187 (17%)
Query: 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75
V+ +P DTV +K KIE G +P A Q +IY GK+L DD T+E + E F+V+M+
Sbjct: 1 VDAEPSDTVGAIKSKIEAAHG---HPVASQKVIYSGKILADDKTIESCGIKEKDFLVLMV 57
Query: 76 TKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVS 135
+K K PTPAAT ++ P A P++ PT + +A
Sbjct: 58 SKPK---------------------PTPAATTSSTPAPATPVAAPPTSESSSTTTTAPPP 96
Query: 136 SVSAT-----SESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNP 190
+ + ++ +G +S ++G+ L+ I +++MG + +D V+RALRA++NNP
Sbjct: 97 AAAPVSSTEPAQQRAFGDTSS-FLSGSALQDTINNMVEMG---FPKDQVLRALRASFNNP 152
Query: 191 ERAVEYL 197
+RAVEYL
Sbjct: 153 DRAVEYL 159
>gi|58259375|ref|XP_567100.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57223237|gb|AAW41281.1| uv excision repair protein rhp23, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 406
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 273 QFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL 332
Q +R MVQ NP ++QP+LQ++ ++P+L +LI ++ L+ G+ +
Sbjct: 292 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGE 351
Query: 333 AGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
+M + +T EE A+ERLEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 352 GPVM--RVNLTQEEAAAVERLEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 404
>gi|448512641|ref|XP_003866779.1| Rad23 protein [Candida orthopsilosis Co 90-125]
gi|380351117|emb|CCG21340.1| Rad23 protein [Candida orthopsilosis Co 90-125]
Length = 402
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 17/127 (13%)
Query: 273 QFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL 332
Q Q+LRA +Q+NP+L+QP+L++L NPQ+ LIQ+ F+R + G +LG ++
Sbjct: 279 QMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQQDPETFIRTF---LGAGGEDLGFEI 335
Query: 333 AGLMPQS--------------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAA 378
G IQ++ +++ AI RL +GF+R +V++V+ AC+KNEE+AA
Sbjct: 336 EGEEGVVGEGGEGADPEGTVRIQLSEQDQNAINRLCELGFERDLVIQVYLACDKNEEVAA 395
Query: 379 NYLLDHM 385
+ L M
Sbjct: 396 DILFRDM 402
>gi|134107453|ref|XP_777611.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260305|gb|EAL22964.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 404
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 273 QFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL 332
Q +R MVQ NP ++QP+LQ++ ++P+L +LI ++ L+ G+ +
Sbjct: 290 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGE 349
Query: 333 AGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
+M + +T EE A+ERLEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 350 GPVM--RVNLTQEEAAAVERLEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 402
>gi|149248070|ref|XP_001528422.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448376|gb|EDK42764.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 359
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 74/131 (56%), Gaps = 21/131 (16%)
Query: 273 QFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL 332
Q Q+LRA +Q+NP+L+QP+L++L NPQ+ +I E F+R + G +LG +
Sbjct: 232 QMQLLRAALQSNPELIQPLLEQLSASNPQIANMISEDPEGFIRTF---LGAGGEDLGFDI 288
Query: 333 AG----------------LMPQSIQ--VTPEEREAIERLEAMGFDRAIVLEVFFACNKNE 374
G P +++ ++ ++ AI RL +GFDR +V++V+ AC+KNE
Sbjct: 289 EGEDADMLGGADGDGEGADAPGTVRIPISEQDENAINRLCELGFDRNLVIQVYLACDKNE 348
Query: 375 ELAANYLLDHM 385
E+AA+ L M
Sbjct: 349 EVAADILFRDM 359
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S G+ E I I++MG +DR V ALRAA+NNP RAVEYL +GIPE + +P
Sbjct: 61 STFALGSEREATILNIMEMG---YDRPQVEAALRAAFNNPHRAVEYLITGIPESLQHRP 116
>gi|393217532|gb|EJD03021.1| UV excision repair protein Rad23 [Fomitiporia mediterranea MF3/22]
Length = 406
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 74/117 (63%), Gaps = 5/117 (4%)
Query: 277 LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLM 336
R V NP LLQPM+Q++ + NP L + ++++ L+L+ G G+ G +
Sbjct: 291 FRNTVMQNPALLQPMIQQIAQSNPNLAQYLEQNPEALLQLLGAIGGEGGLEEGEGGEGGI 350
Query: 337 PQS---IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
P +QVTPEER AIERLEA+GF R V+E +FAC+KNEE+AANYL + + FED
Sbjct: 351 PPGATVLQVTPEERAAIERLEALGFPRQQVVEAYFACDKNEEMAANYLFE--NGFED 405
>gi|354546648|emb|CCE43380.1| hypothetical protein CPAR2_210250 [Candida parapsilosis]
Length = 399
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 17/127 (13%)
Query: 273 QFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL 332
Q Q+LRA +Q+NP+L+QP+L++L NPQ+ LIQ+ F+R + G +LG ++
Sbjct: 276 QMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQQDPETFIRTF---LGAGGEDLGFEI 332
Query: 333 AGLMPQS--------------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAA 378
G IQ++ +++ AI RL +GF+R +V++V+ AC+KNEE+AA
Sbjct: 333 EGEEGAVGEGGEGADPEGTVRIQLSEQDQNAINRLCELGFERDLVIQVYLACDKNEEVAA 392
Query: 379 NYLLDHM 385
+ L M
Sbjct: 393 DILFRDM 399
>gi|321250146|ref|XP_003191705.1| uv excision repair protein rhp23 [Cryptococcus gattii WM276]
gi|317458172|gb|ADV19918.1| uv excision repair protein rhp23, putative [Cryptococcus gattii
WM276]
Length = 394
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 273 QFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL 332
Q +R MVQ NP ++QP+LQ++ ++P+L +LI ++ L+ G+ +
Sbjct: 280 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGE 339
Query: 333 AGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
+M + +T EE A+ERLEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 340 GPVM--RVNLTQEEAAAVERLEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 392
>gi|344302977|gb|EGW33251.1| hypothetical protein SPAPADRAFT_60596 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG 329
+ Q Q+LR +Q NP+L+QP+L++L NPQ+ LIQ+ F+R + GG + G
Sbjct: 252 DDQQMQLLRTALQTNPELIQPLLEQLAATNPQIASLIQQDPEAFIRTF---LGGGSDDFG 308
Query: 330 DQLAGLMPQSIQ-------------VTPEEREAIERLEAMGFDRAIVLEVFFACNKNEEL 376
++ G + Q +T ++ AI RL +GF+R +V++V+ AC+KNEE+
Sbjct: 309 FEIEGEGEDATQGGQEGQGETIRIALTEADQNAINRLCELGFERDLVIQVYLACDKNEEV 368
Query: 377 AANYLLDHM 385
AA+ L M
Sbjct: 369 AADILFRDM 377
>gi|405118128|gb|AFR92903.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
grubii H99]
Length = 390
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 273 QFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQL 332
Q +R MVQ NP ++QP+LQ++ ++P+L +LI ++ L+ G+ +
Sbjct: 276 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGE 335
Query: 333 AGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
+M + +T EE A+ERLEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 336 GPVM--RVNLTQEEAAAVERLEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 388
>gi|299117286|emb|CBN75246.1| rad23b protein [Ectocarpus siliculosus]
Length = 341
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 108/254 (42%), Gaps = 53/254 (20%)
Query: 177 DTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVT 236
D ALRAA+N+ RA YL GIP+ G+G +
Sbjct: 93 DQATAALRAAFNDVSRAASYLMEGIPDNV-------GAGSGGSDARGGGDAALAAAMMAG 145
Query: 237 SSGPNANPLDLFPQGLPDVGSGA-AGAGS-LDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
+ + + GL G AG G+ L+F+R PQF LR +V+ NP +L +LQ
Sbjct: 146 AEDEDGDEGGGGAAGLAQALMGMEAGEGNPLNFMRFHPQFDELRGLVRENPAMLPQVLQG 205
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQG-GEGNLGDQLAGLMPQ--------------- 338
L Q+P+L+ I +H DFLRL+NEP G+ + + GL+
Sbjct: 206 LATQSPELIERINQHPDDFLRLMNEPPDAEGQAIMEMGVEGLLEGMDQEDDEEEEGGDAE 265
Query: 339 --------------------------SIQVTPEEREAIERLEAM--GFDRAIVLEVFFAC 370
++++T EE ++ L AM G R V+E F AC
Sbjct: 266 AVAAGGGGGSPGVGVAGGDGGQGQIVTVELTEEEDAVVQNLMAMVPGAGRDQVIEAFIAC 325
Query: 371 NKNEELAANYLLDH 384
+KN E+AAN L ++
Sbjct: 326 DKNAEMAANLLFEN 339
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKV 65
VKTLKG F ++V E + DVK KI V+G D Q+LI GK LKD +L V
Sbjct: 7 VKTLKGEVFRIDVAEESVMSDVKTKISEVRGHD---PGTQVLICGGKTLKDGDSL-AGSV 62
Query: 66 AENSFVVIML 75
A F+V+M+
Sbjct: 63 AAGGFLVLMV 72
>gi|145499454|ref|XP_001435712.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402847|emb|CAK68315.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 114/239 (47%), Gaps = 57/239 (23%)
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
+ + L++G + AI+Q++ MG + R+ V A++AA+NNP+RAVEYL +GIP
Sbjct: 124 SGTGLLSGPEYDKAIEQLMSMG---FQREECVNAMKAAFNNPDRAVEYLLNGIPPGVTSH 180
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFL 268
P PAPV +SG P P G P+
Sbjct: 181 P----------------------PAPV-ASGQGQPPAAQQPVGQPN-------------- 203
Query: 269 RNSPQFQVLRAMVQANPQLLQPMLQELGKQ----NPQLVRLIQEHQADFLRLINEPVQGG 324
Q Q LR + Q NPQ + +L +L +Q NP+L + ++ L+++ G
Sbjct: 204 ----QIQQLRQLYQQNPQAVLQLLPQLLQQIQQTNPELHAQVSQNPEMLLQMLM-----G 254
Query: 325 EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLD 383
G Q G P SIQ+T +E + IE + +GF + LE + AC+KN E+A NYL +
Sbjct: 255 AG----QQQGPPPGSIQLTQQEFKDIETIMQLGFTKQDSLEGYIACDKNVEMAINYLFE 309
>gi|355715047|gb|AES05207.1| RAD23-like protein A [Mustela putorius furo]
Length = 182
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSA---PTPAATPATAPQTA 114
++ E +FVV+M+TK K G +PT AP+SS P PA+ + P TA
Sbjct: 82 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPAPASGMSHPPPTA 135
>gi|429853552|gb|ELA28621.1| nucleotide excision repair protein rad23 [Colletotrichum
gloeosporioides Nara gc5]
Length = 354
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 63/98 (64%), Gaps = 11/98 (11%)
Query: 287 LLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTP 344
+L+P+LQ LG NPQL +LI + FL+L+ E V D L P Q+I VT
Sbjct: 255 MLEPILQ-LGAGNPQLAQLIANNPDQFLQLLGEEV--------DDDVPLPPGAQAIAVTE 305
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
EER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 306 EERDAIERLCRLGFDRDAAIQAYFACDKNEELAANFLF 343
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P D + VK KI +G D Q LIY GK+LKDD T+E
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTDLISAVKQKIAGEKGWD---PKDQKLIYSGKILKDDDTVE 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
K+ E FVV M+ NK + + ++
Sbjct: 58 SYKIEEKGFVVCMV--NKPKAPKPAPAESSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 115
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
AP S ++ S G ++A N+E MG ++R +
Sbjct: 116 XXXXXXAPRSTGGGDAASNDPSMAMGAQRQEVIA--NMEA-------MG---FERSQIDA 163
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
A+RAA+ NP+RAVEYL +GIPE
Sbjct: 164 AMRAAFYNPDRAVEYLLNGIPE 185
>gi|408391366|gb|EKJ70745.1| hypothetical protein FPSE_09115 [Fusarium pseudograminearum CS3096]
Length = 242
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ K LK F ++V+P + + VK KI +G + Q LIY GK+LKDD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSELISAVKEKISAEKG---WQPQLQKLIYSGKILKDDETVG 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ E FVV M+ K K PT + + P TPAA A A + +
Sbjct: 58 SYNIEEKGFVVCMVNKPK-PTKPAESSAAPPATPAAPPTRTPAAPAAPAQSASQQAAVPA 116
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
TP P S A SE S L G+ AI + MG ++R +
Sbjct: 117 TPTPQ--------RSADAGSEE------PSGLAMGSQRTEAIANMEAMG---FERSQIEA 159
Query: 182 ALRAAYNNPERAVEYLYSGIPE 203
A+RAA+NNP+RAVEYL +GIP+
Sbjct: 160 AMRAAFNNPDRAVEYLLNGIPD 181
>gi|401425983|ref|XP_003877476.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493721|emb|CBZ29011.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 429
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 100/213 (46%), Gaps = 17/213 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KT+ G +V+V+ T+ DVK +E D Y A L + G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLLE-----DEYEPASLRLCFNGAVLEDSKMLA 55
Query: 62 ENKVAENSFVVIMLTKNK--RPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
+ + +N +V+ K K +P S + AP+SSAP +ATP A T V +T
Sbjct: 56 DAGIKDNDSLVLAGRKRKIPKPPAPQSAEPSKTEAAPESSAPASSATPPPAMSTPVLATT 115
Query: 120 EPTPAPTPAPASASVSSVSA--------TSESGVYGHAASNLVAGNNLEGAIQQILD--M 169
P + TP A +A ++ A+ + N G ++D
Sbjct: 116 SPATSATPVDPPAPAVPTAATAPAAPVASTTPAAPAVPAAPAASVTNTYGVAPNLIDEVA 175
Query: 170 GGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
G DR+ + ALRAA+ N ERAVEYL+ GIP
Sbjct: 176 SMGFEDRNQIALALRAAFMNVERAVEYLFEGIP 208
>gi|290999563|ref|XP_002682349.1| rad23 protein [Naegleria gruberi]
gi|284095976|gb|EFC49605.1| rad23 protein [Naegleria gruberi]
Length = 385
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 110/248 (44%), Gaps = 49/248 (19%)
Query: 163 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANS 222
+QQ L+MG +DR+ + ++A++ + A E+L SGIPE + Q + GN
Sbjct: 156 VQQFLEMG---YDRNDIDECMKASFYDRATAAEFLISGIPENVK-QMMQENGGN------ 205
Query: 223 PTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQ 282
+P P Q + S+ + G D SPQ LR ++
Sbjct: 206 ---LPTPPQGGSLASA----------------LAGNQQGFSLRDLFTLSPQLNNLRNAIR 246
Query: 283 ANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNL-------------- 328
NP LL+ L + + +P+L ++IQ + +FL +INE
Sbjct: 247 QNPTLLREFLTHVSQVSPELYQIIQSNPREFLEIINETGPVTGTTGTQPQTTPTTTTGGE 306
Query: 329 ----GDQLAGLM-PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLD 383
G++L P +I ++ ++ I L +GF + ++ + AC+KN+E+AAN L +
Sbjct: 307 HPPSGEELQQQAPPGTIFISQDDERKINELVGLGFTKNEAIQAYLACDKNQEMAANLLFE 366
Query: 384 HMHE-FED 390
+ FED
Sbjct: 367 NRDRGFED 374
>gi|342181674|emb|CCC91154.1| putative UV excision repair RAD23 protein, partial [Trypanosoma
congolense IL3000]
Length = 280
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 96/193 (49%), Gaps = 33/193 (17%)
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSGIP-----EQAEVQPVARAPGNGQAANSPTQM 226
G DRD + ALRAAY NP+RAVE+L++GIP E AE Q A PGN
Sbjct: 78 GFEDRDQIALALRAAYMNPDRAVEFLFTGIPSHVQRELAESQLRA-VPGNTS-------- 128
Query: 227 PQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQ 286
S G +A P G G + L PQ + +R++V++NPQ
Sbjct: 129 ---------VSGGVDATH--------PQSGRGGDTESLFNALMAVPQMEEIRSIVRSNPQ 171
Query: 287 LLQPMLQELGKQNPQLVRLIQEHQADFLR-LINEPVQGGEGNLGDQLAGLMPQSI-QVTP 344
L ++Q+L ++ PQ+ +L+Q+ +F+R ++ + V + D A L ++I +
Sbjct: 172 ALGTVIQQLQERFPQIAQLVQQDPEEFMRFMVGDAVTADTEAVSDGGAALASEAIPPLRE 231
Query: 345 EEREAIERLEAMG 357
EER A+ RL +G
Sbjct: 232 EERAAVNRLVVLG 244
>gi|393245007|gb|EJD52518.1| UV excision repair protein Rad23 [Auricularia delicata TFB-10046
SS5]
Length = 375
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 5/119 (4%)
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN 327
LR +R +VQ NP LLQP++Q+ +Q+PQL + + + +++ + + + +
Sbjct: 255 LRGVESLAGMRELVQQNPALLQPLIQQFAQQDPQLAQAVAANPEMLFQILADGMANMDDD 314
Query: 328 LGDQLAGLMP---QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLD 383
G+ G++P +I++T +E A+ERL A+GF R +E + AC KNEE+AAN+L +
Sbjct: 315 DGE--GGVLPPGTTTIELTADENAAVERLVALGFSRGQAIEAYLACGKNEEIAANFLFE 371
>gi|157872825|ref|XP_001684939.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
gi|68128009|emb|CAJ06783.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
Length = 425
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +KT+ G +V+V+ T+ DVK +E D Y A L + G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSMMLA 55
Query: 62 ENKVAENSFVVIMLTKNKRP------TGEGSTRSTAP-TKAPQSSAPTPAATPATAPQTA 114
+ V +N +V+ K K P T E T AP + AP SS P PA + A A T
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAETPTTEAAPESSAPASSTPPPAMS-APALTTT 114
Query: 115 VPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILD--MGGG 172
P ++ P + ++ ++ A+ + N G ++D G
Sbjct: 115 SPATSAAPVDPPAPAVPTAAAAPVTSTTPAGPAVPAAPAASTTNTYGVAPNLIDEVASMG 174
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIP 202
DR + ALRAA+ N ERAVEYL+ GIP
Sbjct: 175 FEDRSQIALALRAAFMNVERAVEYLFEGIP 204
>gi|46015810|pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b
Complexed With Ubiquitin-Interacting Motif Of
Proteasome Subunit S5a
Length = 95
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 57/78 (73%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNK 79
E K+ E +FVV+M+TK K
Sbjct: 61 EYKIDEKNFVVVMVTKPK 78
>gi|328865495|gb|EGG13881.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 204
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 22/199 (11%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +K + + +V +++V ++K + +Q + A+ Q LIY GKVL++D L
Sbjct: 1 MKITIKNINKEVYTFDVTGDESVTELK---QLIQNKHSHQASWQTLIYGGKVLENDNKLS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ EN F+V M+ K K E + +TA PA PAT P +
Sbjct: 58 TYNITENGFLVCMVKKPK----EETVATTA-----------PAVQPATTPVAPTSAPSTT 102
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
+ + + + + A+S S G+ S+ + G E AI +++M G +R+ V+R
Sbjct: 103 PASTSTPTNTPAPTPSPASSTSPSGGN--SSFIVGPEYEAAITNLMEMSGA--NREMVIR 158
Query: 182 ALRAAYNNPERAVEYLYSG 200
ALRA++NN ERA + L SG
Sbjct: 159 ALRASFNNAERAADILLSG 177
>gi|159162808|pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b
Length = 85
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 56/76 (73%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 4 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 62 ENKVAENSFVVIMLTK 77
E K+ E +FVV+M+TK
Sbjct: 64 EYKIDEKNFVVVMVTK 79
>gi|326427437|gb|EGD73007.1| hypothetical protein PTSG_04716 [Salpingoeca sp. ATCC 50818]
Length = 214
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 103/214 (48%), Gaps = 40/214 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSD-VYPAAQQMLIYQGKVLKDDTTL 60
MK+ VK++K +F+VE V +K I + SD ++P AQ+ LI+ G++LKDD L
Sbjct: 1 MKVTVKSMKAGTFEVEADISKPVRLIKEAIYAEKKSDDLHPDAQR-LIFSGRLLKDDDVL 59
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E EN F+V+M KRP A+ PA + +E
Sbjct: 60 ESLNFKENDFLVVM--GGKRPA---------------------ASKPAADKKDTASSKSE 96
Query: 121 PTPAP--TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
TPA T P AS ++ S+T + G AAS E ++ + MG +DR
Sbjct: 97 ETPASSSTTEPKPASTTTSSSTPAAPSSGPAAS--------EESLNTLTAMG---FDRAQ 145
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVAR 212
RAL AA+ N ERAVEYL +GIP A QP A
Sbjct: 146 AERALSAAFGNIERAVEYLQNGIPTSA--QPAAH 177
>gi|407042326|gb|EKE41271.1| RAD23 protein, putative [Entamoeba nuttalli P19]
Length = 317
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 93/388 (23%), Positives = 160/388 (41%), Gaps = 80/388 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDT-VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDT-T 59
MKI VKT++G + E++PE T V ++K I QG D+ + LIY+ ++LKD+
Sbjct: 1 MKIIVKTIQGILNEYEIEPETTTVGELKEMINAKQGIDIQNIS---LIYKSRMLKDNAQN 57
Query: 60 LEENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIST 119
L + E +V+++ K+ P + + + T + T T T +
Sbjct: 58 LGGLGINEGDSIVMVVKKSAVPPPKPAPVAQPETHS------TEPIQQPTTTTTQPITTN 111
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
+P+ P S +V+ E I +++MG + RD
Sbjct: 112 QPSIQPVDIFQSQQRQTVNVEP-----------------TEENINHLVEMG---FLRDNA 151
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
++ALR + NN A ++L SG+ ++ + P G
Sbjct: 152 IKALRKSQNNTAIAADFLISGV----DLDNIPDQPAGG---------------------- 185
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
+ +PQ GS+ L ++ R PQ+++ +Q + +N
Sbjct: 186 -----YEEYPQ----------EPGSILNLTKDQFIELCREQ----PQIIESFIQHVESEN 226
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSI----QVTPEEREAIERLEA 355
P +LI+ + +I G Q P Q++PE+ AI+RL
Sbjct: 227 PSAAQLIRNNPGMIYDIIKSQTNDNRVPSGPQPTQPQPNHAPAQPQLSPEDNAAIDRLCG 286
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLD 383
+GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 287 LGFGRSQCLQAYIACDKNEQLAANFLLD 314
>gi|380476277|emb|CCF44800.1| hypothetical protein CH063_14080, partial [Colletotrichum
higginsianum]
Length = 94
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 58/91 (63%), Gaps = 10/91 (10%)
Query: 294 ELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMP--QSIQVTPEEREAIE 351
+LG NPQL +LI + FL+L+ E V D L P Q+IQVT EER+AIE
Sbjct: 1 QLGAGNPQLAQLIANNPDQFLQLLGEEV--------DDDVPLPPGAQAIQVTEEERDAIE 52
Query: 352 RLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
RL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 53 RLCRLGFDRDAAIQAYFACDKNEELAANFLF 83
>gi|348690401|gb|EGZ30215.1| hypothetical protein PHYSODRAFT_553293 [Phytophthora sojae]
Length = 450
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTL+G +F ++ + D V VK KIE +Q +P AQQ LI+ GKVLKDD+TL
Sbjct: 1 MKLTVKTLQGVAFPLDAELTDAVSAVKQKIEGLQN---FPVAQQKLIHAGKVLKDDSTLA 57
Query: 62 ENKVAENSFVVIMLT 76
E V EN F+V+M+T
Sbjct: 58 EYNVKENDFLVVMVT 72
>gi|259155371|ref|NP_001158747.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223646842|gb|ACN10179.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223672703|gb|ACN12533.1| UV excision repair protein RAD23 homolog B [Salmo salar]
Length = 131
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 60/91 (65%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +KTL+ + +++ P+ TV +K KIE +G D +P + Q LIY GK+L+DDT ++
Sbjct: 1 MQITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAP 92
+ K+ E +FVV+M++K K T + S AP
Sbjct: 61 DYKIDEKNFVVVMVSKAKSTTAASTPSSEAP 91
>gi|349604998|gb|AEQ00385.1| UV excision repair protein RAD23-like protein B-like protein,
partial [Equus caballus]
Length = 94
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 11/87 (12%)
Query: 306 IQEHQADFLRLINEPVQGGEGN----------LGDQLAGLMPQSIQVTPEEREAIERLEA 355
I +HQ F++++NEPVQ G + + +G M IQVTP+E+EAIERL+A
Sbjct: 2 ISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKA 60
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLL 382
+GF +V++ +FAC KNE LAAN+LL
Sbjct: 61 LGFPEGLVIQAYFACEKNENLAANFLL 87
>gi|258644511|dbj|BAI39766.1| osRAD23-like [Oryza sativa Indica Group]
gi|258644734|dbj|BAI39979.1| osRAD23-like [Oryza sativa Indica Group]
Length = 88
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 35/38 (92%)
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
MGGG WDRDTV+ A RAAYNNPERA+EYLY+G+PEQAE
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQAE 38
>gi|34015239|gb|AAQ56432.1| putative DNA repairing protein [Oryza sativa Japonica Group]
gi|35210523|dbj|BAC92639.1| unknown protein [Oryza sativa Japonica Group]
gi|35215224|dbj|BAC92575.1| unknown protein [Oryza sativa Japonica Group]
Length = 88
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 35/38 (92%)
Query: 169 MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 206
MGGG WDRDTV+ A RAAYNNPERA+EYLY+G+PEQAE
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQAE 38
>gi|297811745|ref|XP_002873756.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
gi|297319593|gb|EFH50015.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
Length = 134
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 46/61 (75%), Gaps = 5/61 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKGT F++EVKP D+ IETV G+ YPAAQQ+LI++GK L+D+ T+E
Sbjct: 1 MKIIVKTLKGTRFEIEVKPNDS-----KNIETVLGASEYPAAQQILIHKGKKLRDEATME 55
Query: 62 E 62
E
Sbjct: 56 E 56
>gi|357504261|ref|XP_003622419.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
gi|355497434|gb|AES78637.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
Length = 176
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 24 VFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK-NKRPT 82
+ DVK IE +Q D YP QQ+LI+ GKVLKD+TTL +N+V+E+ F+V+ML+K N R
Sbjct: 77 IMDVKTNIEDIQEKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFLVVMLSKVNNRSM 136
Query: 83 G 83
G
Sbjct: 137 G 137
>gi|351700121|gb|EHB03040.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 140
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
+ +KTL+ +F +++ PE+TV + KIE+ +G D +P A Q LIY GK+L DD T++E
Sbjct: 55 VTLKTLQQQTFKIDIDPEETVKALNEKIESEKGKDAFPVAGQKLIYAGKILNDD-TVKEY 113
Query: 64 KVAENSFVVIMLTKNK 79
K+ E +FVV M+TK K
Sbjct: 114 KIDEKNFVVFMVTKPK 129
>gi|159162855|pdb|1PVE|A Chain A, Solution Structure Of Xpc Binding Domain Of Hhr23b
Length = 72
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 47/58 (81%)
Query: 265 LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ 322
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 6 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQ 63
>gi|123504409|ref|XP_001328742.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
gi|121911689|gb|EAY16519.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
Length = 310
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 156/382 (40%), Gaps = 79/382 (20%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI + G ++EV + + DVK +I V+ + + + L+++ K LK +TL+
Sbjct: 1 MKIICQIFSGDKLELEVTEDQDINDVKKQISEVKNAKI---EEIKLLFKSKFLKSPSTLK 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGE-GSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + ENS +++M+ NK+P T T P A ++ AP P+ I +
Sbjct: 58 ECGITENSKLIVMVP-NKKPAPPINKTTETKP--AEENKAP-------NQPEETKKI-IQ 106
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P AP P S + + E I+Q+ +G ++
Sbjct: 107 PEIAPLPTVDKKSKIELPP------------------DFEDKIKQLQQLG---YEYSECS 145
Query: 181 RALRAAYNNPERAVEYLYSG-IPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
RALR A N E A L SG IP++ + + P +G N + P
Sbjct: 146 RALRVAGFNTEIAANILLSGSIPDEIDYELAGDLPTDGDDENGEEE-DASLHITPEIKKH 204
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
+P + Q L D+ L + P + L + NP LL L +LG
Sbjct: 205 YEEHPEKI--QELIDM-----------LLLSDPAYYFL---AKNNPMLL---LTQLG--- 242
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
+ DF +L G ++ +L ++T EE++ ++RLE G+D
Sbjct: 243 ------FDVSKFDFSKL-------GPKSMYQELLD------KLTDEEKQVVKRLEEKGYD 283
Query: 360 RAIVLEVFFACNKNEELAANYL 381
VL+ F ACNK+E+L L
Sbjct: 284 SMEVLQTFEACNKDEKLTEECL 305
>gi|311771876|pdb|2WYQ|A Chain A, The Crystal Structure Of The Ubiquitin-Like (Ubl) Domain
Of Hhr23a (Human Homologue A Of Rad23)
Length = 85
Score = 69.3 bits (168), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 52/76 (68%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 8 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 67
Query: 64 KVAENSFVVIMLTKNK 79
++ E +FVV+M+TK K
Sbjct: 68 RIDEKNFVVVMVTKTK 83
>gi|93279429|pdb|2F4M|B Chain B, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
gi|93279431|pdb|2F4O|B Chain B, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
Length = 61
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 46/57 (80%)
Query: 265 LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV 321
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPV
Sbjct: 4 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60
>gi|37927447|pdb|1P98|A Chain A, High-Resolution Nmr Structure Of The Ubl-Domain Of
Hhr23a
gi|37927452|pdb|1P9D|U Chain U, High-Resolution Structure Of The Complex Of Hhr23a
Ubiquitin-Like Domain And The C-Terminal Ubiquitin-
Interacting Motif Of Proteasome Subunit S5a
Length = 78
Score = 68.9 bits (167), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 52/76 (68%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
+ I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 62 ENKVAENSFVVIMLTK 77
+ ++ E +FVV+M+TK
Sbjct: 63 DYRIDEKNFVVVMVTK 78
>gi|357501513|ref|XP_003621045.1| RAD23-like protein [Medicago truncatula]
gi|355496060|gb|AES77263.1| RAD23-like protein [Medicago truncatula]
Length = 142
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY 198
G YG A SNL+AG+ LE IQQI D+G RD V+RAL AAYNNPER VEYLY
Sbjct: 60 GTYGKAESNLIAGSTLEPTIQQI-DIGRKL-VRDIVIRALSAAYNNPERTVEYLY 112
>gi|281207510|gb|EFA81693.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 220
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 94/200 (47%), Gaps = 10/200 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ ++ + + +V E+ V +K E + + Q LIY GK+L++D L
Sbjct: 1 MKVTIRNVNKEVYTFDVTGEEKVIQLK---EMIADKHKHLPTWQTLIYSGKILENDNQLS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ EN F+V M+ K+P E + T AP+ T +T T
Sbjct: 58 TYNITENGFIVCMV---KKPKEESTPAPPTTTTTAAPQAPSSTTTTSTPQAATPAAPTTT 114
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASN-LVAGNNLEGAIQQILDMGGGTWDRDTVV 180
PTP P + S + + + + S V+G E ++QI DMG + RD +
Sbjct: 115 PIQPTPTPTATSTPTTTPSPATATSPQRDSTGFVSGPEYELIVKQIEDMG---FSRDDIT 171
Query: 181 RALRAAYNNPERAVEYLYSG 200
RALRA+YNNPERAVE L +G
Sbjct: 172 RALRASYNNPERAVELLLTG 191
>gi|158430391|pdb|2QSF|X Chain X, Crystal Structure Of The Rad4-Rad23 Complex
gi|158430393|pdb|2QSG|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Uv-Damaged Dna
gi|158430397|pdb|2QSH|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Mismatch Dna
Length = 171
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 24/132 (18%)
Query: 277 LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--------QGGEGNL 328
LR +V NP+ L P+L+ + + PQL I + F+ ++ E V +G + +
Sbjct: 38 LRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMV 97
Query: 329 --------GDQLAGLMPQ-----SIQV--TPEEREAIERLEAMGFDRAIVLEVFFACNKN 373
G+ A + Q S QV TPE+ +AI RL +GF+R +V++V+FAC+KN
Sbjct: 98 EGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKN 157
Query: 374 EELAANYLL-DH 384
EE AAN L DH
Sbjct: 158 EEAAANILFSDH 169
>gi|407416607|gb|EKF37719.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi
marinkellei]
Length = 300
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 39/186 (20%)
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPA--PVTSSG 239
ALRAAY NP+RAVE+L +GIP M + +PA P SS
Sbjct: 111 ALRAAYMNPDRAVEFLCTGIPSDV--------------------MQRMNEPAINPSASSE 150
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
++ D + S +A +L + PQF +R++VQANP+ L ++Q+L +
Sbjct: 151 RMSSLTDRLTSHMRQDDSDSALYNALMQI---PQFGEIRSIVQANPESLPTVVQQLRIHH 207
Query: 300 PQLVRLIQEHQADFLRLINEPVQ--------GGEGNLGDQLAGLMPQSIQVTPEEREAIE 351
P+++ LIQ+ FLR++ P Q GG+ D + SI + EER AI+
Sbjct: 208 PEVIGLIQQDLEGFLRIMGNPGQTEFTTSAGGGDNVPHDSV------SIPLREEERVAIQ 261
Query: 352 RLEAMG 357
RL +G
Sbjct: 262 RLVELG 267
>gi|195445192|ref|XP_002070215.1| GK11154 [Drosophila willistoni]
gi|194166300|gb|EDW81201.1| GK11154 [Drosophila willistoni]
Length = 284
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 19/122 (15%)
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN 327
L + P+F R ++ +P+ L+ +L+ +G+ +P+ L I +Q G +
Sbjct: 176 LLSDPRFIQFRDAIRDHPEALEGLLRRIGESDPET-----------LEAIRNGIQNGFED 224
Query: 328 LGDQLAGLMPQSIQV--TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
G +SIQV TPEE A+ERL ++GF R +VL+V+ AC+KNEELAA+ L
Sbjct: 225 DGGS------ESIQVSLTPEELAAVERLISLGFQREMVLQVYLACDKNEELAADILFRES 278
Query: 386 HE 387
E
Sbjct: 279 EE 280
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 51/202 (25%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQM-LIYQGKVLKDDTTL 60
MK+ +++L SF+VE+ +V +K + + ++ +A+Q+ LIY G++++D L
Sbjct: 1 MKLLIRSLDQKSFNVEMNVSQSVLALKKHLAGI--PEISLSAEQLQLIYAGRIMEDTQPL 58
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + + +++M+ KNK + P K P T P TA E
Sbjct: 59 SEYNIQDGK-IIVMMGKNK------PVQVETPVKE--------ELVPPTPPLTAQSSQQE 103
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
P P+ AP E +++++ MG ++ + V
Sbjct: 104 PR-RPSQAPN-----------------------------EDRVRELVSMG---YEEEEVR 130
Query: 181 RALRAAYNNPERAVEYLYSGIP 202
ALRA++N+PERA+EYL +G+P
Sbjct: 131 AALRASFNHPERAIEYLINGLP 152
>gi|409045113|gb|EKM54594.1| hypothetical protein PHACADRAFT_258558 [Phanerochaete carnosa
HHB-10118-sp]
Length = 415
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 129 PASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN 188
PA A+ S A S + A V G +L+ A+Q +++MG ++R+ +RALRA+YN
Sbjct: 131 PAQAAPVSTPAQSARAINDENA--FVTGADLQTAVQNMMEMG---FEREQAMRALRASYN 185
Query: 189 NPERAVEYLYSGIPEQAE-VQPVARAP 214
NPERAVEYL++GIP E V RAP
Sbjct: 186 NPERAVEYLFNGIPSHLEDVAAGTRAP 212
>gi|443714722|gb|ELU07000.1| hypothetical protein CAPTEDRAFT_148202, partial [Capitella teleta]
Length = 320
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 258 GAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLI 317
AG L FLR++PQF+ +R +VQ+NP LL LQE+ + NP+L ++I E+Q F++++
Sbjct: 256 STAGEDPLHFLRSTPQFETMRRLVQSNPGLLSNFLQEIRQANPRLFQMINENQERFVQML 315
Query: 318 NEP 320
N+P
Sbjct: 316 NDP 318
>gi|195609762|gb|ACG26711.1| hypothetical protein [Zea mays]
Length = 38
Score = 66.2 bits (160), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/35 (77%), Positives = 32/35 (91%)
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
MGF+R +VLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 1 MGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 35
>gi|109126538|ref|XP_001116344.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Macaca
mulatta]
Length = 53
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 38/43 (88%)
Query: 340 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
IQVTP+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL
Sbjct: 4 IQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLL 46
>gi|317107865|dbj|BAJ53744.1| nucleotide excision repair protein [Marsupenaeus japonicus]
Length = 382
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + +K L+ +F VE++ TV +K K+E +G D YPA Q LIY GK+ +DDTTL
Sbjct: 1 MVVLTLKNLQQQTFTVEIELSATVKALKEKVEKEKGGD-YPAVGQKLIYAGKIPQDDTTL 59
Query: 61 EENKVAENSFVVIMLTK 77
E + + F+VIM+TK
Sbjct: 60 ESYNIDDKKFLVIMVTK 76
>gi|355715049|gb|AES05208.1| RAD23-like protein A [Mustela putorius furo]
Length = 102
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 15/104 (14%)
Query: 261 GAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP 320
G L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++NEP
Sbjct: 1 GENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 60
Query: 321 VQGGEGNLGD---------QLAGLMPQ--SIQVTPEEREAIERL 353
G L D + PQ IQVTP+E+EAIER+
Sbjct: 61 ----PGELADISDVEGEGGAIGEEAPQMNYIQVTPQEKEAIERV 100
>gi|402580657|gb|EJW74606.1| hypothetical protein WUBG_14486, partial [Wuchereria bancrofti]
Length = 80
Score = 62.8 bits (151), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 38/49 (77%)
Query: 339 SIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387
+I VT ER+AI RL++MGF +V+E +FAC+KNE+LAANY+L M E
Sbjct: 30 AIHVTEAERDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 78
>gi|397633408|gb|EJK70964.1| hypothetical protein THAOC_07640 [Thalassiosira oceanica]
Length = 829
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M +IFVKTL G + + VKP +TV VKMKI+ G PA QQ LIY G L++ TL
Sbjct: 489 MTRIFVKTLDGNTISLHVKPSETVDSVKMKIQYEIG---MPANQQRLIYLGTQLENGRTL 545
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
+ + E+S + I+L P+ AP +S + QT P+S +
Sbjct: 546 SDYNIQEDSTLHIVLRLRSGPSSPSGDDYAAPPCQSSASRVKGGRARQSRQQTLPPVSIQ 605
Query: 121 PTPAPTPAP 129
AP
Sbjct: 606 SLAMNDAAP 614
>gi|9955429|dbj|BAB12223.1| RAD23 homolog [Hydractinia echinata]
Length = 101
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 43/60 (71%)
Query: 260 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINE 319
+ L FLRN PQFQ++R VQ +P+ L +LQE+G+ NPQL++LI ++Q F+ L+NE
Sbjct: 1 SAVADLSFLRNLPQFQLMRDQVQEHPESLPQLLQEIGQSNPQLLQLISQNQEAFIALLNE 60
>gi|403300123|ref|XP_003940807.1| PREDICTED: uncharacterized protein LOC101032377 [Saimiri
boliviensis boliviensis]
Length = 458
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|345800149|ref|XP_003434657.1| PREDICTED: polyubiquitin-like [Canis lupus familiaris]
Length = 180
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAA----TPATAPQTAVPI 117
+ + + S + ++L + R + R T P+ P+ + P+ PI
Sbjct: 58 DYNIQKKSTLHLIL--HLRGVTKSGIRPTGDNHGPRHRIPSLHQLLQDSQLIGPKVNCPI 115
Query: 118 STE-PTPA 124
+E TPA
Sbjct: 116 HSELCTPA 123
>gi|224052490|ref|XP_002198304.1| PREDICTED: AN1-type zinc finger protein 4 [Taeniopygia guttata]
Length = 715
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P +QQ LI+ LKDD L+
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPVSQQHLIWNNMELKDDYCLD 84
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 85 DYNISEGCTLKLVL 98
>gi|403264482|ref|XP_003924511.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 1
[Saimiri boliviensis boliviensis]
gi|403264484|ref|XP_003924512.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 2
[Saimiri boliviensis boliviensis]
Length = 128
Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKKG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+N + + S + ++L
Sbjct: 58 DNNIQKESTLHLVL 71
>gi|291416572|ref|XP_002724522.1| PREDICTED: UV excision repair protein RAD23 homolog B-like,
partial [Oryctolagus cuniculus]
Length = 365
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ ++ +F +++ P TV +K KIE QG D +P A Q L+Y G+VL DD L
Sbjct: 1 MRLTLEAGPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLR 60
Query: 62 ENKVAENSFVVIMLTK 77
+ ++ E+ V +++ +
Sbjct: 61 DCQIHEHHAVTVLVAR 76
>gi|449279914|gb|EMC87347.1| AN1-type zinc finger and ubiquitin domain-containing protein 1
[Columba livia]
Length = 699
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P +QQ LI+ LKDD L
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPVSQQHLIWNNTELKDDYCLN 84
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 85 DYNISEGCTLKLVL 98
>gi|291407419|ref|XP_002719906.1| PREDICTED: RAD23B protein-like [Oryctolagus cuniculus]
Length = 527
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVV 72
+F +++ P TV +K KIE QG D +P A Q L+Y G+VL DD L + ++ E+ V
Sbjct: 132 TFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVT 191
Query: 73 IMLTK 77
+++ +
Sbjct: 192 VLVAR 196
>gi|389583319|dbj|GAB66054.1| DNA repair protein RAD23, partial [Plasmodium cynomolgi strain B]
Length = 117
Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 40/52 (76%), Gaps = 3/52 (5%)
Query: 340 IQVTP---EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEF 388
I +TP E E+I++LE++GF + + LE F AC+KNEE+AANYL ++M+++
Sbjct: 30 IPITPLNENEMESIKKLESLGFPKHLALEAFIACDKNEEMAANYLFENMNDY 81
>gi|363735451|ref|XP_003641561.1| PREDICTED: LOW QUALITY PROTEIN: AN1-type zinc finger and
ubiquitin domain-containing protein 1 [Gallus gallus]
Length = 735
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P +QQ LI+ LKDD L
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPISQQHLIWNNVELKDDYCLN 84
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 85 DYNISEGCTLKLVL 98
>gi|397637202|gb|EJK72575.1| hypothetical protein THAOC_05883 [Thalassiosira oceanica]
Length = 504
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 269 RNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV 321
RN PQF LR +VQ+NP LQ +L ++G+Q P+L++ I +Q +FL ++NEPV
Sbjct: 307 RNHPQFDSLRRLVQSNPNALQQVLAQIGQQQPELLQAINANQQEFLAMMNEPV 359
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 338 QSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
Q ++++ EE A+ RL MGFDR + + AC+KNE LAAN L+
Sbjct: 434 QVLRLSEEEMAAVNRLTEMGFDRTEAAQAYLACDKNEALAANLLM 478
>gi|284044814|ref|YP_003395154.1| ubiquitin [Conexibacter woesei DSM 14684]
gi|283949035|gb|ADB51779.1| ubiquitin [Conexibacter woesei DSM 14684]
Length = 360
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ VK KI+ +G P +Q LIY G+VL+D TL
Sbjct: 26 MQIFVKTLTGKTITLEVEPSDSIEQVKQKIQDKEG---IPPDRQRLIYAGRVLEDGRTLA 82
Query: 62 ENKVAENSFVVIML 75
+ + S + + L
Sbjct: 83 DYNIQRESTLHLFL 96
>gi|357613261|gb|EHJ68407.1| hypothetical protein KGM_07711 [Danaus plexippus]
Length = 490
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ V+TL GT+F++ V P DT+F +K KI V+G P +QQ L+Y + L D +L
Sbjct: 1 MEVLVETLTGTAFEMTVSPSDTIFAIKSKIYRVEG---IPVSQQHLLYNLRELDDGLSLS 57
Query: 62 ENKVAENSFVVIML 75
E+ + + + + ++L
Sbjct: 58 EHAIGDGARLRLVL 71
>gi|440493001|gb|ELQ75520.1| putative Ubiquitin, Ubiquitin subgroup protein
[Trachipleistophora hominis]
Length = 78
Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ DVK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTICDVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ V + S + ++L
Sbjct: 58 DYNVQKESTLHLVL 71
>gi|55228560|gb|AAV44215.1| ubuiquitin/ribosomal L40 fusion protein [Scleronephthya
gracillimum]
Length = 128
Score = 58.5 bits (140), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|148664711|gb|EDK97127.1| mCG1031578 [Mus musculus]
Length = 122
Score = 58.5 bits (140), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IF+KTL G + +EVKP DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFMKTLTGKTITLEVKPSDTIENVKAKIQDKEG---IPPDQQRLIFTGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|318946686|ref|NP_001187064.1| ribosomal protein L40 [Ictalurus punctatus]
gi|15293953|gb|AAK95169.1|AF401597_1 ribosomal protein L40 [Ictalurus punctatus]
Length = 128
Score = 58.2 bits (139), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK+KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKVKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392874240|gb|AFM85952.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 58.2 bits (139), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|157361519|gb|ABV44717.1| ubiquitin/ribosomal L40 fusion protein-like protein [Phlebotomus
papatasi]
Length = 128
Score = 58.2 bits (139), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|442762197|gb|JAA73257.1| Putative ubiquitin/40s ribosomal protein s27a fusion, partial
[Ixodes ricinus]
Length = 129
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 53 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 109
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 110 DYNIQKESTLHLVL 123
>gi|76155444|gb|AAX26732.2| SJCHGC08803 protein [Schistosoma japonicum]
Length = 193
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+M IF++TL G+SF V V P +TV VK +I+ G P QQ LI+Q L D L
Sbjct: 2 LMGIFIETLTGSSFKVRVSPTETVVSVKFEIQRAGG---IPITQQHLIWQNNELDDHCCL 58
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVP 116
++ ++E S + ++L S R P AP++ P TP P+T +P
Sbjct: 59 KDYSISEGSTLRLVL----------SLRG-GPLNAPRT--PPLRLTPIHLPKTTLP 101
>gi|208435490|pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy
gi|306440386|pdb|2KX0|A Chain A, The Solution Structure Of Ubb+1, Frameshift Mutant Of
Ubiquitin B
Length = 103
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 65
Query: 62 ENKVAENSFVVIML 75
E + + S + ++L
Sbjct: 66 EYNIQKESTLHLVL 79
>gi|326923591|ref|XP_003208018.1| PREDICTED: LOW QUALITY PROTEIN: AN1-type zinc finger and
ubiquitin domain-containing protein 1-like [Meleagris
gallopavo]
Length = 735
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P +QQ LI+ LKDD L
Sbjct: 28 MELFIETLTGTCFELCVSPFETVISVKAKIQRLEG---IPISQQHLIWNNVELKDDYCLN 84
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 85 DYNISEGCTLKLVL 98
>gi|405951523|gb|EKC19428.1| Ubiquitin [Crassostrea gigas]
Length = 128
Score = 58.2 bits (139), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|283459000|gb|ADB22377.1| ubiquitin [Crassostrea hongkongensis]
Length = 128
Score = 58.2 bits (139), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|12240039|gb|AAG49552.1|AF268491_1 ubiquitin [Biomphalaria glabrata]
gi|12240042|gb|AAG49553.1|AF268492_1 ubiquitin [Biomphalaria glabrata]
gi|12240012|gb|AAG49540.1| ubiquitin [Biomphalaria glabrata]
Length = 128
Score = 58.2 bits (139), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392874848|gb|AFM86256.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 58.2 bits (139), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|301754679|ref|XP_002913151.1| PREDICTED: ubiquitin-like [Ailuropoda melanoleuca]
Length = 80
Score = 58.2 bits (139), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ Q + P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQDKEGIPPDQQRLIFAGKQLEDGRTLS 60
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|452824950|gb|EME31950.1| ubiquitin [Galdieria sulphuraria]
Length = 128
Score = 58.2 bits (139), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|281343818|gb|EFB19402.1| hypothetical protein PANDA_000950 [Ailuropoda melanoleuca]
Length = 79
Score = 57.8 bits (138), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ Q + P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQDKEGIPPDQQRLIFAGKQLEDGRTLS 60
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|443893900|dbj|GAC71356.1| small Nuclear ribonucleoprotein splicing factor [Pseudozyma
antarctica T-34]
Length = 176
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 274 FQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLA 333
F V+ +VQ NP LQP++Q + + NPQL + L L+ G +
Sbjct: 66 FLVVMQLVQQNPAALQPLVQAIAQSNPQLAEAMNHDPQGVLSLLAGGAGGAGEEME---- 121
Query: 334 GLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+P +++ E+R +E++ AMG +E FF C KN E+A Y ++ +F+D
Sbjct: 122 --LPTLAELSDEDRAGVEQIVAMGIPEDKAIESFFMCGKNVEMAVQYYFENPQDFDD 176
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +K+L G +F ++ + DT+ +K KI+ QG + Q +I+ GK+L DD T+
Sbjct: 1 MKLLIKSLAGGNFHLDAELSDTIGAIKQKIQAEQG---HKPEWQKIIFSGKILTDDKTVA 57
Query: 62 ENKVAENSFVVIMLTKNKRPTG 83
+ + E F+V+M + P
Sbjct: 58 DCNIKEKDFLVVMQLVQQNPAA 79
>gi|225703194|gb|ACO07443.1| Ubiquitin [Oncorhynchus mykiss]
Length = 128
Score = 57.8 bits (138), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|209735846|gb|ACI68792.1| Ubiquitin [Salmo salar]
Length = 128
Score = 57.8 bits (138), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|47217408|emb|CAG00768.1| unnamed protein product [Tetraodon nigroviridis]
Length = 128
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392875450|gb|AFM86557.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392873562|gb|AFM85613.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392873546|gb|AFM85605.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392873746|gb|AFM85705.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392873918|gb|AFM85791.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874206|gb|AFM85935.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874268|gb|AFM85966.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874326|gb|AFM85995.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874392|gb|AFM86028.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874486|gb|AFM86075.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874560|gb|AFM86112.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874574|gb|AFM86119.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874648|gb|AFM86156.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874714|gb|AFM86189.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874718|gb|AFM86191.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874884|gb|AFM86274.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874994|gb|AFM86329.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875042|gb|AFM86353.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875206|gb|AFM86435.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875390|gb|AFM86527.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875410|gb|AFM86537.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875770|gb|AFM86717.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875828|gb|AFM86746.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392876496|gb|AFM87080.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392876738|gb|AFM87201.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877088|gb|AFM87376.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877618|gb|AFM87641.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877774|gb|AFM87719.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877822|gb|AFM87743.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877918|gb|AFM87791.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392878102|gb|AFM87883.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392878372|gb|AFM88018.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392879328|gb|AFM88496.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392879514|gb|AFM88589.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392879830|gb|AFM88747.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392880522|gb|AFM89093.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392881620|gb|AFM89642.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392882226|gb|AFM89945.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392882556|gb|AFM90110.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392883408|gb|AFM90536.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392883792|gb|AFM90728.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392883942|gb|AFM90803.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392884134|gb|AFM90899.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|195342419|ref|XP_002037798.1| GM18458 [Drosophila sechellia]
gi|194132648|gb|EDW54216.1| GM18458 [Drosophila sechellia]
Length = 128
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|152013697|gb|ABS19964.1| ubiquitin/ribosomal L40 fusion protein [Artemia franciscana]
Length = 129
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|17136570|ref|NP_476776.1| ribosomal protein L40, isoform A [Drosophila melanogaster]
gi|442625834|ref|NP_001260018.1| ribosomal protein L40, isoform B [Drosophila melanogaster]
gi|58390190|ref|XP_317555.2| AGAP007927-PA [Anopheles gambiae str. PEST]
gi|125986696|ref|XP_001357111.1| GA15543 [Drosophila pseudoobscura pseudoobscura]
gi|157113624|ref|XP_001652028.1| anopheles stephensi ubiquitin [Aedes aegypti]
gi|170032305|ref|XP_001844022.1| anopheles stephensi ubiquitin [Culex quinquefasciatus]
gi|194758697|ref|XP_001961598.1| GF15052 [Drosophila ananassae]
gi|194855956|ref|XP_001968650.1| GG24988 [Drosophila erecta]
gi|195035911|ref|XP_001989415.1| GH10063 [Drosophila grimshawi]
gi|195114034|ref|XP_002001572.1| GI16482 [Drosophila mojavensis]
gi|195160144|ref|XP_002020936.1| GL13989 [Drosophila persimilis]
gi|195401058|ref|XP_002059131.1| GJ16220 [Drosophila virilis]
gi|195437464|ref|XP_002066660.1| GK24609 [Drosophila willistoni]
gi|195471224|ref|XP_002087905.1| RpL40 [Drosophila yakuba]
gi|195550845|ref|XP_002076117.1| GD12014 [Drosophila simulans]
gi|302393715|sp|P18101.2|RL40_DROME RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=CEP52; Contains: RecName: Full=Ubiquitin;
Contains: RecName: Full=60S ribosomal protein L40;
Flags: Precursor
gi|16118870|gb|AAL14636.1|AF418984_1 ubiquitin-52-amino-acid fusion protein [Aedes aegypti]
gi|8779|emb|CAA37227.1| unnamed protein product [Drosophila melanogaster]
gi|8785|emb|CAA42568.1| ubiquitin extension protein [Drosophila melanogaster]
gi|7295730|gb|AAF51034.1| ribosomal protein L40, isoform A [Drosophila melanogaster]
gi|16074119|emb|CAC94469.1| anopheles stephensi ubiquitin [Anopheles stephensi]
gi|18447400|gb|AAL68264.1| RE10554p [Drosophila melanogaster]
gi|38047797|gb|AAR09801.1| similar to Drosophila melanogaster RpL40, partial [Drosophila
yakuba]
gi|38048585|gb|AAR10195.1| similar to Drosophila melanogaster RpL40, partial [Drosophila
yakuba]
gi|54645438|gb|EAL34177.1| GA15543 [Drosophila pseudoobscura pseudoobscura]
gi|55237763|gb|EAA12215.2| AGAP007927-PA [Anopheles gambiae str. PEST]
gi|56417572|gb|AAV90727.1| 60S ribosomal protein L40 [Aedes albopictus]
gi|108877674|gb|EAT41899.1| AAEL006511-PA [Aedes aegypti]
gi|114864908|gb|ABI83782.1| ubiquitin [Anopheles funestus]
gi|167872308|gb|EDS35691.1| anopheles stephensi ubiquitin [Culex quinquefasciatus]
gi|190615295|gb|EDV30819.1| GF15052 [Drosophila ananassae]
gi|190660517|gb|EDV57709.1| GG24988 [Drosophila erecta]
gi|193905415|gb|EDW04282.1| GH10063 [Drosophila grimshawi]
gi|193912147|gb|EDW11014.1| GI16482 [Drosophila mojavensis]
gi|194117886|gb|EDW39929.1| GL13989 [Drosophila persimilis]
gi|194156005|gb|EDW71189.1| GJ16220 [Drosophila virilis]
gi|194162745|gb|EDW77646.1| GK24609 [Drosophila willistoni]
gi|194174006|gb|EDW87617.1| RpL40 [Drosophila yakuba]
gi|194201766|gb|EDX15342.1| GD12014 [Drosophila simulans]
gi|208657505|gb|ACI30049.1| ubiquitin/60S ribosomal protein L40 fusion [Anopheles darlingi]
gi|220947932|gb|ACL86509.1| RpL40-PA [synthetic construct]
gi|220957162|gb|ACL91124.1| RpL40-PA [synthetic construct]
gi|255710365|gb|ACU31002.1| ubiquitin/60S ribosomal protein L40 fusion [Ochlerotatus
triseriatus]
gi|270211317|gb|ACZ64922.1| ubiquitin-L40 ribosomal fusion protein [Aedes aegypti]
gi|312374067|gb|EFR21714.1| hypothetical protein AND_29478 [Anopheles darlingi]
gi|440213300|gb|AGB92554.1| ribosomal protein L40, isoform B [Drosophila melanogaster]
Length = 128
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|395501173|ref|XP_003754972.1| PREDICTED: LOW QUALITY PROTEIN: AN1-type zinc finger protein 4
[Sarcophilus harrisii]
Length = 760
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P QQ LI+ L+DD L
Sbjct: 54 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPICQQHLIWNNMELEDDYCLN 110
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 111 DYNISEGCTLKLVL 124
>gi|223646368|gb|ACN09942.1| Ubiquitin [Salmo salar]
gi|223672215|gb|ACN12289.1| Ubiquitin [Salmo salar]
Length = 128
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392874990|gb|AFM86327.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|402869938|ref|XP_003899000.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Papio
anubis]
Length = 128
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|333466063|gb|AEF33800.1| Ubi-gD2tr [synthetic construct]
Length = 383
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|334313731|ref|XP_003339943.1| PREDICTED: AN1-type zinc finger and ubiquitin domain-containing
protein 1 [Monodelphis domestica]
Length = 741
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P QQ LI+ L+DD L
Sbjct: 54 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPICQQHLIWNNMELEDDYCLN 110
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 111 DYNISEGCTLKLVL 124
>gi|91080141|ref|XP_968519.1| PREDICTED: similar to ribosomal protein Ubq/L40e [Tribolium
castaneum]
gi|270005662|gb|EFA02110.1| hypothetical protein TcasGA2_TC007754 [Tribolium castaneum]
Length = 129
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|70909907|emb|CAJ17440.1| ribosomal protein Ubq/L40e [Agriotes lineatus]
gi|70909909|emb|CAJ17441.1| ribosomal protein Ubq/L40e [Biphyllus lunatus]
gi|70909911|emb|CAJ17442.1| ribosomal protein Ubq/L40e [Carabus granulatus]
gi|70909915|emb|CAJ17444.1| ribosomal protein Ubq/L40e [Julodis onopordi]
gi|332373432|gb|AEE61857.1| unknown [Dendroctonus ponderosae]
Length = 128
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|70909913|emb|CAJ17443.1| ribosomal protein Ubq/L40e [Dascillus cervinus]
gi|70909917|emb|CAJ17445.1| ribosomal protein Ubq/L40e [Scarabaeus laticollis]
Length = 128
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392883062|gb|AFM90363.1| ubiquitin/ribosomal L40 fusion protein [Callorhinchus milii]
gi|392883064|gb|AFM90364.1| ubiquitin/ribosomal L40 fusion protein [Callorhinchus milii]
Length = 128
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392874614|gb|AFM86139.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|308512650|gb|ADO32980.1| ubiquitin b [Eriocheir sinensis]
gi|320382413|gb|ADW27185.1| ubiquitin/ribosomal L40 fusion protein [Eriocheir sinensis]
Length = 129
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|15187109|gb|AAK91296.1|AF395864_1 ubiquitin [Branchiostoma belcheri]
Length = 128
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392874782|gb|AFM86223.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|148693134|gb|EDL25081.1| mCG67952 [Mus musculus]
Length = 128
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGLTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|195565407|ref|XP_002106293.1| GD16200 [Drosophila simulans]
gi|194203667|gb|EDX17243.1| GD16200 [Drosophila simulans]
Length = 105
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|344283081|ref|XP_003413301.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Loxodonta
africana]
Length = 179
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 52 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 108
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 109 DYNIQKESTLHLVL 122
>gi|387914034|gb|AFK10626.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392873442|gb|AFM85553.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|209879912|ref|XP_002141396.1| 60S ribosomal protein L40 [Cryptosporidium muris RN66]
gi|209557002|gb|EEA07047.1| 60S ribosomal protein L40, putative [Cryptosporidium muris RN66]
Length = 128
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|185134441|ref|NP_001117666.1| ubiquitin [Oncorhynchus mykiss]
gi|348523133|ref|XP_003449078.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Oreochromis
niloticus]
gi|6633991|dbj|BAA88568.1| ubiquitin [Oncorhynchus mykiss]
gi|113707410|gb|ABI36601.1| ubiquitin/ribosomal protein L40 fusion protein [Bufo gargarizans]
gi|197632607|gb|ACH71027.1| ubiquitin A-52 residue ribosomal protein fusion product 1like 1
[Salmo salar]
gi|223646494|gb|ACN10005.1| Ubiquitin [Salmo salar]
gi|223672341|gb|ACN12352.1| Ubiquitin [Salmo salar]
gi|300677970|gb|ADK27292.1| ubiquitin [Siniperca chuatsi]
Length = 128
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|291231495|ref|XP_002735697.1| PREDICTED: ribosomal protein L40-like isoform 1 [Saccoglossus
kowalevskii]
gi|291231497|ref|XP_002735698.1| PREDICTED: ribosomal protein L40-like isoform 2 [Saccoglossus
kowalevskii]
Length = 128
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|296205125|ref|XP_002749733.1| PREDICTED: polyubiquitin-C-like [Callithrix jacchus]
Length = 177
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 101 MQIFVKTLTGKTITFEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 157
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 158 DYNIQKESTLHLVL 171
>gi|213512766|ref|NP_001133215.1| ubiquitin A-52 residue ribosomal protein fusion product 1like 2
[Salmo salar]
gi|197632325|gb|ACH70886.1| ubiquitin A-52 residue ribosomal protein fusion product 1-like
[Salmo salar]
gi|197632609|gb|ACH71028.1| ubiquitin A-52 residue ribosomal protein fusion product 1like 2
[Salmo salar]
gi|209731296|gb|ACI66517.1| Ubiquitin [Salmo salar]
gi|209731836|gb|ACI66787.1| Ubiquitin [Salmo salar]
gi|221219244|gb|ACM08283.1| Ubiquitin [Salmo salar]
gi|225704338|gb|ACO08015.1| Ubiquitin [Oncorhynchus mykiss]
gi|225705386|gb|ACO08539.1| Ubiquitin [Oncorhynchus mykiss]
gi|303661345|gb|ADM16032.1| Ubiquitin [Salmo salar]
Length = 128
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|124300855|dbj|BAF45923.1| ubiquitin [Solea senegalensis]
gi|164691021|dbj|BAF98693.1| ribosomal protein L40 [Solea senegalensis]
Length = 128
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|328864214|gb|AEB53190.1| ubuiquitin/ribosomal L40 fusion protein [Holothuria glaberrima]
Length = 128
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|61378584|gb|AAX44930.1| ubiquitin/ribosomal fusion protein [Bubalus bubalis]
Length = 128
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIRKESTLHLVL 71
>gi|402863905|ref|XP_003896232.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Papio anubis]
Length = 177
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 51 MQIFVKTLAGKTITLEVEPSDTTENVKAKIQAKEG---IPLDQQRLIFAGKQLEDGRTLS 107
Query: 62 ENKVAENSFVVIML 75
+ + + S + + L
Sbjct: 108 DCNIQKESILHLGL 121
>gi|4507761|ref|NP_003324.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens]
gi|9845265|ref|NP_063936.1| ubiquitin-60S ribosomal protein L40 [Mus musculus]
gi|13928952|ref|NP_113875.1| ubiquitin-60S ribosomal protein L40 [Rattus norvegicus]
gi|47523498|ref|NP_999376.1| ubiquitin-60S ribosomal protein L40 [Sus scrofa]
gi|52346160|ref|NP_001005123.1| ubiquitin A-52 residue ribosomal protein fusion product 1
[Xenopus (Silurana) tropicalis]
gi|57164317|ref|NP_001009286.1| ubiquitin-60S ribosomal protein L40 [Ovis aries]
gi|77539055|ref|NP_001029102.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens]
gi|115496708|ref|NP_001069831.1| ubiquitin-60S ribosomal protein L40 [Bos taurus]
gi|148236927|ref|NP_001085456.1| ubiquitin A-52 residue ribosomal protein fusion product 1
[Xenopus laevis]
gi|197101265|ref|NP_001124707.1| 60S ribosomal protein L40 [Pongo abelii]
gi|224994156|ref|NP_001116826.1| ubiquitin A-52 residue ribosomal protein fusion product 1
precursor [Felis catus]
gi|224994158|ref|NP_001121567.1| ubiquitin-60S ribosomal protein L40 [Canis lupus familiaris]
gi|307691235|ref|NP_001182685.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Macaca
mulatta]
gi|334878539|ref|NP_001229382.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Equus
caballus]
gi|126323475|ref|XP_001363046.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Monodelphis
domestica]
gi|296233314|ref|XP_002761958.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 2
[Callithrix jacchus]
gi|296233316|ref|XP_002761959.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 3
[Callithrix jacchus]
gi|301753933|ref|XP_002912779.1| PREDICTED: ubiquitin-like [Ailuropoda melanoleuca]
gi|332854147|ref|XP_001135183.2| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1 [Pan
troglodytes]
gi|332854157|ref|XP_003316254.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2 [Pan
troglodytes]
gi|332854161|ref|XP_003339364.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 6 [Pan
troglodytes]
gi|332854165|ref|XP_003316256.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 3 [Pan
troglodytes]
gi|332854172|ref|XP_003339365.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 7 [Pan
troglodytes]
gi|332854176|ref|XP_003316259.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 5 [Pan
troglodytes]
gi|345327641|ref|XP_001508987.2| PREDICTED: ubiquitin-60S ribosomal protein L40-like
[Ornithorhynchus anatinus]
gi|354473967|ref|XP_003499203.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 1
[Cricetulus griseus]
gi|354473969|ref|XP_003499204.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 2
[Cricetulus griseus]
gi|395847937|ref|XP_003796620.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1
[Otolemur garnettii]
gi|395847939|ref|XP_003796621.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2
[Otolemur garnettii]
gi|397493849|ref|XP_003817808.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1 [Pan
paniscus]
gi|397493851|ref|XP_003817809.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2 [Pan
paniscus]
gi|397493853|ref|XP_003817810.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 3 [Pan
paniscus]
gi|397493855|ref|XP_003817811.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 4 [Pan
paniscus]
gi|397493857|ref|XP_003817812.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 5 [Pan
paniscus]
gi|397493859|ref|XP_003817813.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 6 [Pan
paniscus]
gi|397493863|ref|XP_003817815.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 8 [Pan
paniscus]
gi|397493865|ref|XP_003817816.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 9 [Pan
paniscus]
gi|397493867|ref|XP_003817817.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 10 [Pan
paniscus]
gi|402904821|ref|XP_003915237.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1 [Papio
anubis]
gi|402904823|ref|XP_003915238.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2 [Papio
anubis]
gi|402904825|ref|XP_003915239.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 3 [Papio
anubis]
gi|402904827|ref|XP_003915240.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 4 [Papio
anubis]
gi|403303449|ref|XP_003942339.1| PREDICTED: ubiquitin-60S ribosomal protein L40 [Saimiri
boliviensis boliviensis]
gi|410053489|ref|XP_003953464.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 8 [Pan
troglodytes]
gi|410053491|ref|XP_003953465.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 9 [Pan
troglodytes]
gi|426387846|ref|XP_004060373.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1 [Gorilla
gorilla gorilla]
gi|426387848|ref|XP_004060374.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2 [Gorilla
gorilla gorilla]
gi|426387850|ref|XP_004060375.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 3 [Gorilla
gorilla gorilla]
gi|426387852|ref|XP_004060376.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 4 [Gorilla
gorilla gorilla]
gi|426387856|ref|XP_004060378.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 6 [Gorilla
gorilla gorilla]
gi|426387858|ref|XP_004060379.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 7 [Gorilla
gorilla gorilla]
gi|426387860|ref|XP_004060380.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 8 [Gorilla
gorilla gorilla]
gi|426387862|ref|XP_004060381.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 9 [Gorilla
gorilla gorilla]
gi|426387864|ref|XP_004060382.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 10
[Gorilla gorilla gorilla]
gi|302393708|sp|P63048.2|RL40_BOVIN RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393711|sp|P63050.2|RL40_CANFA RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393717|sp|P63052.2|RL40_FELCA RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393718|sp|P62987.2|RL40_HUMAN RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=CEP52; AltName: Full=Ubiquitin A-52 residue
ribosomal protein fusion product 1; Contains: RecName:
Full=Ubiquitin; Contains: RecName: Full=60S ribosomal
protein L40; Flags: Precursor
gi|302393721|sp|P0C273.2|RL40_MACFA RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393722|sp|P62984.2|RL40_MOUSE RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393725|sp|P68205.2|RL40_OPHHA RecName: Full=Ubiquitin-60S ribosomal protein L40; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=60S
ribosomal protein L40; AltName: Full=CEP52; Flags:
Precursor
gi|302393726|sp|P63053.2|RL40_PIG RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=CEP52; AltName: Full=Ubiquitin A-52 residue
ribosomal protein fusion product 1; Contains: RecName:
Full=Ubiquitin; Contains: RecName: Full=60S ribosomal
protein L40; Flags: Precursor
gi|302393727|sp|P0C275.2|RL40_PONPY RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393728|sp|P62986.2|RL40_RAT RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393729|sp|P0C276.2|RL40_SHEEP RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|7439591|pir||I65237 ubiquitin / ribosomal protein L40, cytosolic [validated] - rat
gi|10442712|gb|AAG17445.1|AF297036_1 ubiquitin fusion protein [Ophiophagus hannah]
gi|37565|emb|CAA40313.1| ubiquitin-52 amino acid fusion protein [Homo sapiens]
gi|37567|emb|CAA40312.1| ubiquitin-52 amino acid fusion protein [Homo sapiens]
gi|37569|emb|CAA40314.1| ubiquitin-52 amino acid fusion protein [Homo sapiens]
gi|600538|gb|AAA56988.1| ubiquitin [synthetic construct]
gi|1050758|emb|CAA57958.1| ubiquitin/ribosomal protein L40 [Rattus norvegicus]
gi|1628608|gb|AAB52914.1| ubiquitin/ribosomal fusion protein [Sus scrofa]
gi|3288887|gb|AAC25582.1| ubiquitin-52 amino acid fusion protein [Homo sapiens]
gi|4139066|gb|AAD03678.1| ubiquitin/ribosomal protein CEP52 fusion protein [Cricetulus sp.]
gi|4262555|gb|AAD14688.1| ubiquitin/60S ribosomal fusion protein [Mus musculus]
gi|5822852|dbj|BAA83996.1| ubiquitin [Canis lupus familiaris]
gi|6692804|dbj|BAA89414.1| ubiquitin [Felis catus]
gi|12858585|dbj|BAB31371.1| unnamed protein product [Mus musculus]
gi|15928599|gb|AAH14772.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Mus
musculus]
gi|32484364|gb|AAH54413.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Mus
musculus]
gi|38494519|gb|AAH61544.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Rattus
norvegicus]
gi|45642969|gb|AAS72379.1| ubiqitin RPL40 fusion protein [Ovis aries]
gi|49255973|gb|AAH72791.1| MGC80109 protein [Xenopus laevis]
gi|50603988|gb|AAH77658.1| ubiquitin A-52 residue ribosomal protein fusion product 1
[Xenopus (Silurana) tropicalis]
gi|51874063|gb|AAH80838.1| Uba52 protein [Mus musculus]
gi|55725462|emb|CAH89595.1| hypothetical protein [Pongo abelii]
gi|56541098|gb|AAH86924.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Mus
musculus]
gi|56971100|gb|AAH87922.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Mus
musculus]
gi|67969366|dbj|BAE01035.1| unnamed protein product [Macaca fascicularis]
gi|74268013|gb|AAI02249.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Bos
taurus]
gi|75516919|gb|AAI01833.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
gi|75517948|gb|AAI01831.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
gi|89269516|emb|CAJ83027.1| ubiquitin A-52 residue ribosomal protein fusion product 1
[Xenopus (Silurana) tropicalis]
gi|92918941|gb|ABE96835.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
gi|119605121|gb|EAW84715.1| ubiquitin A-52 residue ribosomal protein fusion product 1,
isoform CRA_a [Homo sapiens]
gi|119605122|gb|EAW84716.1| ubiquitin A-52 residue ribosomal protein fusion product 1,
isoform CRA_a [Homo sapiens]
gi|119605123|gb|EAW84717.1| ubiquitin A-52 residue ribosomal protein fusion product 1,
isoform CRA_a [Homo sapiens]
gi|119605124|gb|EAW84718.1| ubiquitin A-52 residue ribosomal protein fusion product 1,
isoform CRA_a [Homo sapiens]
gi|148673756|gb|EDL05703.1| mCG6478 [Mus musculus]
gi|148696881|gb|EDL28828.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696882|gb|EDL28829.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696883|gb|EDL28830.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696884|gb|EDL28831.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696885|gb|EDL28832.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696886|gb|EDL28833.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696887|gb|EDL28834.1| mCG23116, isoform CRA_a [Mus musculus]
gi|149036028|gb|EDL90694.1| ubiquitin A-52 residue ribosomal protein fusion product 1,
isoform CRA_a [Rattus norvegicus]
gi|149036029|gb|EDL90695.1| ubiquitin A-52 residue ribosomal protein fusion product 1,
isoform CRA_a [Rattus norvegicus]
gi|149036030|gb|EDL90696.1| ubiquitin A-52 residue ribosomal protein fusion product 1,
isoform CRA_a [Rattus norvegicus]
gi|189054488|dbj|BAG37261.1| unnamed protein product [Homo sapiens]
gi|219518886|gb|AAI43669.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
gi|281343542|gb|EFB19126.1| hypothetical protein PANDA_000559 [Ailuropoda melanoleuca]
gi|296486182|tpg|DAA28295.1| TPA: ubiquitin and ribosomal protein L40 [Bos taurus]
gi|307686201|dbj|BAJ21031.1| ubiquitin A-52 residue ribosomal protein fusion product 1
[synthetic construct]
gi|327239326|gb|AEA39530.1| ribosomal protein L40 [Ailuropoda melanoleuca]
gi|327239426|gb|AEA39580.1| ribosomal protein L40 [Ailuropoda melanoleuca]
gi|351713798|gb|EHB16717.1| Ubiquitin [Heterocephalus glaber]
gi|384949206|gb|AFI38208.1| ubiquitin-60S ribosomal protein L40 precursor [Macaca mulatta]
gi|387018310|gb|AFJ51273.1| Ubiquitin-60S ribosomal protein L40 [Crotalus adamanteus]
Length = 128
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|209730830|gb|ACI66284.1| Ubiquitin [Salmo salar]
Length = 127
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IF+KTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFIKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ V + S + ++L
Sbjct: 58 DYNVQKESTLHLVL 71
>gi|55669980|pdb|1TP4|A Chain A, Solution Structure Of The Xpc Binding Domain Of Hhr23a
Protein
Length = 97
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 47/62 (75%)
Query: 259 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLIN 318
AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++N
Sbjct: 6 AAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLN 65
Query: 319 EP 320
EP
Sbjct: 66 EP 67
>gi|12084372|pdb|1F4I|A Chain A, Solution Structure Of The Hhr23a Uba(2) Mutant P333e,
Deficient In Binding The Hiv-1 Accessory Protein Vpr
Length = 45
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/46 (54%), Positives = 37/46 (80%), Gaps = 2/46 (4%)
Query: 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+E+EAIERL+A+GF+ ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 1 QEKEAIERLKALGFEESLVIQAYFACEKNENLAANFLLS--QNFDD 44
>gi|5441519|emb|CAB46814.1| ubiquitin-ribosomal protein L40 fusion protein [Canis lupus
familiaris]
Length = 128
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|337263153|gb|AEI69279.1| ribosomal protein L40 [Oncorhynchus masou formosanus]
Length = 128
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|330688314|gb|AEC32931.1| ubiquitin [Pachycara brachycephalum]
Length = 129
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|80751129|ref|NP_001032190.1| 60S ribosomal protein L40 [Danio rerio]
gi|77567706|gb|AAI07518.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Danio
rerio]
gi|111494058|gb|AAI05747.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Danio
rerio]
Length = 128
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|110671470|gb|ABG81986.1| putative ubiquitin/ribosomal fusion protein [Diaphorina citri]
Length = 129
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|39725569|dbj|BAD04937.1| poryprotein [Bovine viral diarrhea virus 190cp]
Length = 3020
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1946 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 2002
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 2003 DYNIQKESTLHLVL 2016
>gi|39725571|dbj|BAD04938.1| poryprotein [Bovine viral diarrhea virus T-20]
Length = 2420
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1464 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1520
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1521 DYNIQKESTLHLVL 1534
>gi|225714096|gb|ACO12894.1| Ubiquitin [Lepeophtheirus salmonis]
gi|290462695|gb|ADD24395.1| Ubiquitin [Lepeophtheirus salmonis]
Length = 128
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|261289543|ref|XP_002604748.1| hypothetical protein BRAFLDRAFT_122556 [Branchiostoma floridae]
gi|229290076|gb|EEN60758.1| hypothetical protein BRAFLDRAFT_122556 [Branchiostoma floridae]
Length = 363
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M +F++TL GT+F++ V P +TV VK KI+ ++G P +QQ LI++ L+DD L
Sbjct: 1 MDLFIETLTGTAFELRVSPFETVISVKAKIQRLEG---IPISQQHLIWRSVELEDDYCLH 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
+ + + S + ++L P +TR +A +S + +A Q+AV
Sbjct: 58 DYSITDGSTLKLVLAMRGGPI---NTRRVNADQAAESRSGFTSAKDEGG-QSAVRTRVMD 113
Query: 122 TPAPT 126
AP+
Sbjct: 114 YGAPS 118
>gi|5523975|gb|AAD44040.1|AF104023_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 309
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 177 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 233
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 234 DYNIQKESTLHLVL 247
>gi|152925970|gb|ABS32204.1| ubiquitin fusion protein [Cyprinus carpio]
Length = 128
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|109121596|ref|XP_001118431.1| PREDICTED: ubiquitin-like isoform 1 [Macaca mulatta]
gi|297274949|ref|XP_002800913.1| PREDICTED: ubiquitin-like isoform 2 [Macaca mulatta]
Length = 128
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|402294541|gb|AFQ55252.1| URT reporter protein [URT reporter vector pKP55-M]
Length = 1401
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ G+ L+D TL
Sbjct: 246 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGRQLEDGRTLS 302
Query: 62 ENKVAENSFVVIMLTKNKRPTGEG------STRSTAPTKAPQSSAPTPAATPATAPQTAV 115
+ + + S + ++L G G S T AP + +P A + Q A
Sbjct: 303 DYNIQKESTLHLVLRLRGGMHGSGAWLLPVSLVKRKTTLAPNTQTASPRALADSLMQLAR 362
Query: 116 PISTEPTPAPTPAPASASVSSVSAT 140
+S A P AS S + T
Sbjct: 363 QVSRLNRLAAHPPFASWRNSEEART 387
>gi|5523977|gb|AAD44041.1|AF104024_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 365
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 233 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 289
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 290 DYNIQKESTLHLVL 303
>gi|5523967|gb|AAD44036.1|AF104019_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 344
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 212 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 268
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 269 DYNIQKESTLHLVL 282
>gi|298707279|emb|CBJ25906.1| UV excision repair protein RAD23B homolog [Ectocarpus siliculosus]
Length = 466
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV 321
+L+ R PQF L+ +VQ +P L +LQ +G+Q+P L+ I E+Q DF+ L+NEP+
Sbjct: 177 TLEDFRGHPQFNELKRLVQRDPTQLSSILQMIGRQSPNLLARIHENQGDFIALMNEPI 234
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 340 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
I+++ EE A+ RL +GF+R + + AC+KNE LAAN+LL+ M
Sbjct: 342 IRLSEEEGAAVARLTELGFERTDAAQAYLACDKNEALAANFLLNDM 387
>gi|109067209|ref|XP_001096612.1| PREDICTED: hypothetical protein LOC708161 [Macaca mulatta]
Length = 204
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 78 MQIFVKTLTGKTITLEVEPSDTTENVKAKIQAKEG---IPLDQQRLIFAGKQLEDGRTLS 134
Query: 62 ENKVAENSFVVIML 75
+ + + S + + L
Sbjct: 135 DCNIQKESILHLGL 148
>gi|148708840|gb|EDL40787.1| mCG7881 [Mus musculus]
Length = 128
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLPGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|76155958|gb|AAX27211.2| SJCHGC03112 protein [Schistosoma japonicum]
Length = 155
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 24/149 (16%)
Query: 54 LKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRSTAP-TKAPQSSAPTPA-ATPATAP 111
++D +L++ KV ++ FVV+M + +K P ST+ + P P+ +P
Sbjct: 1 MEDSKSLKDYKVTDSGFVVVM-SVSKLPRDIAKEASTSVLSNLTDEGKPMPSEKSPNVDV 59
Query: 112 QTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGG 171
+V ++T P+ A + S+LV G + E +Q+++ MG
Sbjct: 60 IESVNVATTPSTA------------------TNTLSFLKSSLVLGEDFESVVQELVSMG- 100
Query: 172 GTWDRDTVVRALRAAYNNPERAVEYLYSG 200
+++ V++A+RA +NNP+RA EYL SG
Sbjct: 101 --FEKPLVIQAMRAGFNNPDRAFEYLSSG 127
>gi|47604954|ref|NP_990406.1| ubiquitin-60S ribosomal protein L40 [Gallus gallus]
gi|2558539|emb|CAA82846.1| ubiquitin-ribosomal protein fusion protein [Gallus gallus]
Length = 128
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|123398957|ref|XP_001301380.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123497770|ref|XP_001327247.1| polyubiquitin [Trichomonas vaginalis G3]
gi|154420157|ref|XP_001583094.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121882554|gb|EAX88450.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910174|gb|EAY15024.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121917333|gb|EAY22108.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 132
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 62 ENKVAENSFVVIML 75
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|197129052|gb|ACH45550.1| putative ubiquitin C variant 1 [Taeniopygia guttata]
Length = 245
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
++ + + S + ++L
Sbjct: 58 DDNIQKESTLHLVL 71
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKV 65
+ +
Sbjct: 210 DYNI 213
>gi|225710628|gb|ACO11160.1| Ubiquitin [Caligus rogercresseyi]
Length = 128
Score = 57.0 bits (136), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|154416656|ref|XP_001581350.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
gi|121915576|gb|EAY20364.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
Length = 231
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 41/57 (71%), Gaps = 4/57 (7%)
Query: 325 EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYL 381
E N+GD A L Q++P++REAI+RLEA GF++ +V++V++AC NEE A N L
Sbjct: 173 EQNVGDYSAKLE----QLSPDQREAIKRLEANGFEKHLVIQVYYACEFNEENALNIL 225
>gi|395513211|ref|XP_003760822.1| PREDICTED: ubiquitin-60S ribosomal protein L40 [Sarcophilus
harrisii]
Length = 182
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 55 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 111
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 112 DYNIQKESTLHLVL 125
>gi|449015586|dbj|BAM78988.1| 60S ribosomal protein L40, ubiquitin fusion protein
[Cyanidioschyzon merolae strain 10D]
Length = 128
Score = 57.0 bits (136), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|110671414|gb|ABG81958.1| putative ubiquitin/ribosomal protein S27Ae fusion protein
[Diaphorina citri]
Length = 156
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+DD TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDDRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|197129054|gb|ACH45552.1| putative ubiquitin C variant 1 [Taeniopygia guttata]
Length = 77
Score = 57.0 bits (136), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MHIFVKTLTGKTLSLEVEPTDTIENVKAKIQAKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESILHLVL 71
>gi|109052650|ref|XP_001092853.1| PREDICTED: ubiquitin-like [Macaca mulatta]
gi|355560077|gb|EHH16805.1| hypothetical protein EGK_12156 [Macaca mulatta]
Length = 145
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EVKP DT DVK KI+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVKPSDTNEDVKAKIQDKEG---IPPDQQHLILAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + E S + ++L
Sbjct: 58 DYDIWEESTLHLVL 71
>gi|113431898|emb|CAJ90900.1| ubiquitin/ribosomal fusion protein homologue [Salmo salar]
Length = 135
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 10 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 66
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 67 DYNIQKESTLHLVL 80
>gi|441628709|ref|XP_003275965.2| PREDICTED: polyubiquitin-C-like [Nomascus leucogenys]
Length = 181
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 42 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 98
Query: 62 ENKV-AENSF-VVIMLTKNKR 80
+ + E F +++ L KR
Sbjct: 99 DYNIQKETGFHMLVRLKGGKR 119
>gi|5523987|gb|AAD44046.1|AF104029_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 395
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 263 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 319
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 320 DYNIQKESTLHLVL 333
>gi|355747111|gb|EHH51725.1| hypothetical protein EGM_11159 [Macaca fascicularis]
Length = 146
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EVKP DT DVK KI+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVKPSDTNEDVKAKIQDKEG---IPPDQQHLILAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + E S + ++L
Sbjct: 58 DYDIWEESTLHLVL 71
>gi|392875698|gb|AFM86681.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 57.0 bits (136), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLF 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|426387866|ref|XP_004060383.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 11 [Gorilla
gorilla gorilla]
Length = 158
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 31 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 87
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 88 DYNIQKESTLHLVL 101
>gi|339262860|ref|XP_003367195.1| putative ubiquitin family protein [Trichinella spiralis]
gi|316963854|gb|EFV49251.1| putative ubiquitin family protein [Trichinella spiralis]
Length = 110
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 26 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 82
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 83 DYNIQKESTLHLVL 96
>gi|392880568|gb|AFM89116.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFV+TL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVRTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392874040|gb|AFM85852.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK +I+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKARIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|294860854|gb|ADF45323.1| ubiquitin/ribosomal L40 fusion protein [Eriocheir sinensis]
Length = 129
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ +I+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRIIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|109716253|gb|ABG43105.1| ubiquitin [Pectinaria gouldii]
Length = 128
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|432904346|ref|XP_004077285.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Oryzias
latipes]
Length = 209
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 54 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 110
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 111 DYNIQKESTLHLVL 124
>gi|264667445|gb|ACY71308.1| ribosomal protein L40 [Chrysomela tremula]
Length = 129
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|11528469|gb|AAG37291.1| humanized L1/ubiqutin hybrid protein [synthetic construct]
Length = 575
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENS--FVVIMLTKNKRPT 82
+ + + S +V+ L RP+
Sbjct: 58 DYNIQKESTLHLVLRLRGAWRPS 80
>gi|159145744|gb|ABW90409.1| putative ribosomal protein L40 [Barentsia elongata]
Length = 128
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|332854163|ref|XP_003316257.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 4 [Pan
troglodytes]
gi|397493861|ref|XP_003817814.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 7 [Pan
paniscus]
Length = 175
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 48 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 104
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 105 DYNIQKESTLHLVL 118
>gi|1574969|gb|AAC47388.1| Ub52 [Acropora millepora]
Length = 129
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|5523979|gb|AAD44042.1|AF104025_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 432
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 224 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 280
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 281 DYNIQKESTLHLVL 294
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 300 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 356
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 357 DYNIQKESTLHLVL 370
>gi|340375318|ref|XP_003386183.1| PREDICTED: polyubiquitin-like [Amphimedon queenslandica]
Length = 968
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GKVL DD TL
Sbjct: 628 MQIFVKTLTGRTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKVLVDDRTLS 684
Query: 62 ENKV 65
+ +
Sbjct: 685 DYNI 688
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK+L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKILEDGRTLS 209
Query: 62 ENKVAENSFVVIMLT 76
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVLC 224
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ ++K KI+ +G P QQ LI+ G+ L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTMENIKAKIQDKEG---IPPDQQRLIFAGRQLEDGRTLS 133
Query: 62 ENKVAENSFVVIMLTK 77
+ + + S + ++L +
Sbjct: 134 DYNIQKESTLHLVLRR 149
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDT--- 58
M I+VKTL G +F++ V +T+ +VK KIE G P QQ +IY G+ L+DD
Sbjct: 541 MTIYVKTLTGKTFELNVIYCNTIGNVKTKIEETGG---IPCNQQKIIYDGRQLEDDYIED 597
Query: 59 TLEENKV 65
TL NK+
Sbjct: 598 TLLPNKI 604
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I +K L G S +EV+ DTV VK KI+ +G P QQ LI+ GK L++ TL
Sbjct: 1 MRISIKPLVGESLSLEVEASDTVESVKEKIQDKEG---IPPDQQRLIFVGKQLENGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + S + ++L
Sbjct: 58 DYNIQNESTLHLVL 71
>gi|5523981|gb|AAD44043.1|AF104026_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 216
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 84 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 140
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 141 DYNIQKESTLHLVL 154
>gi|407925275|gb|EKG18290.1| Ubiquitin-associated/translation elongation factor EF1B
[Macrophomina phaseolina MS6]
Length = 468
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKV 65
VK+ + + + TV D+K K+ T + +D PA +Q LIY G+VLKD TLE KV
Sbjct: 16 VKSSNDAKYTLTLPRSTTVADLKGKLATSEYADT-PAERQRLIYSGRVLKDHDTLESTKV 74
Query: 66 AENSFVVIMLT--KNKR--PTGEGSTRSTAPTKAPQSSAPTPAAT 106
+ + + ++ + N R P +G++ +T+ AP+++ PT AT
Sbjct: 75 KDGNTIHLVKSAASNARQNPANQGTSAATSGAGAPRNNVPTSFAT 119
>gi|214868|gb|AAA49979.1| ubiquitin-like fusion protein [Xenopus laevis]
Length = 701
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P AQQ LI+ L+D+ +L
Sbjct: 28 MELFIETLTGTCFELRVSPYETVTSVKSKIQRLEG---IPVAQQHLIWNNMELEDECSLS 84
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 85 DYNISEGCTLKMVL 98
>gi|296221018|ref|XP_002756700.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like, partial
[Callithrix jacchus]
Length = 138
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL+G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 12 MQIFVKTLRGKTITLEVEPSDTIENVKPKIQDKEG---IPPDQQHLIFAGKQLEDGRTLS 68
Query: 62 ENKVAENSFVVIMLT 76
+ + + S + ++L
Sbjct: 69 DYNIQKESTLHLVLC 83
>gi|163915892|gb|AAI57792.1| LOC100135402 protein [Xenopus (Silurana) tropicalis]
Length = 85
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 65
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 66 DYNIQKESTLHLVL 79
>gi|121543733|gb|ABM55549.1| putative ribosomal protein Ubq/L40e [Maconellicoccus hirsutus]
Length = 128
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|121543985|gb|ABM55657.1| putative ribosomal protein Ubq/L40e [Maconellicoccus hirsutus]
Length = 128
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|426387854|ref|XP_004060377.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 5 [Gorilla
gorilla gorilla]
Length = 175
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 48 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 104
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 105 DYNIQKESTLHLVL 118
>gi|327281434|ref|XP_003225453.1| PREDICTED: AN1-type zinc finger and ubiquitin domain-containing
protein 1-like [Anolis carolinensis]
Length = 711
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
+M+I ++TL GT F++ V P +TV VK KI+ ++G P +QQ LI+ + L+DD L
Sbjct: 27 IMEIIIETLTGTCFELRVSPFETVISVKSKIQRLEG---IPVSQQHLIWNDEELEDDYGL 83
Query: 61 EENKVAENSFVVIML 75
+ +++E + ++L
Sbjct: 84 NDYEISEGCTLKLIL 98
>gi|449017230|dbj|BAM80632.1| ubiquitin with short C-terminal extension [Cyanidioschyzon
merolae strain 10D]
Length = 134
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|327358639|gb|AEA51166.1| ubiquitin and ribosomal protein S27a precursor, partial [Oryzias
melastigma]
Length = 116
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 22 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 78
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 79 DYNIQKESTLHLVL 92
>gi|371572867|gb|AEX37896.1| ubiquitin/TetR-Vp16 fusion protein [piggyBac transformation
vector OX3604]
Length = 414
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ G+ L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGRQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|148232894|ref|NP_001081336.1| ubiquitin-like fusion protein [Xenopus laevis]
gi|51703870|gb|AAH80990.1| LOC397781 protein [Xenopus laevis]
Length = 701
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++F++TL GT F++ V P +TV VK KI+ ++G P AQQ LI+ L+D+ +L
Sbjct: 28 MELFIETLTGTCFELRVSPYETVTSVKSKIQRLEG---IPVAQQHLIWNNMELEDECSLS 84
Query: 62 ENKVAENSFVVIML 75
+ ++E + ++L
Sbjct: 85 DYNISEGCTLKMVL 98
>gi|392877386|gb|AFM87525.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTTENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392332716|ref|XP_003752669.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|392352643|ref|XP_001053626.2| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
Length = 90
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKKSTLHLVL 71
>gi|296211496|ref|XP_002752432.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
Length = 155
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLMGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENS 69
+N + + S
Sbjct: 58 DNNIQKES 65
>gi|348558880|ref|XP_003465244.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cavia
porcellus]
Length = 191
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 64 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 120
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 121 DYNIQKESTLHLVL 134
>gi|40556034|ref|NP_955119.1| CNPV096 ubiquitin [Canarypox virus]
gi|40233859|gb|AAR83442.1| CNPV096 ubiquitin [Canarypox virus]
Length = 85
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DTV +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTVENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|395508039|ref|XP_003758323.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Sarcophilus
harrisii]
Length = 228
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 73 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 129
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 130 DYNIQKESTLHLVL 143
>gi|149242629|pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide-
Binding Tag
Length = 111
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 92
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 93 DYNIQKESTLHLVL 106
>gi|53987035|gb|AAV27297.1| poly-histidine-tagged ubiquitin [Cloning vector pHUE]
Length = 130
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 77
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 78 DYNIQKESTLHLVL 91
>gi|326561245|gb|ADZ95639.1| 40S ribosomal protein S31 [Nosema bombycis]
Length = 138
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLS 57
Query: 62 ENKVAENS--FVVIMLTKNKRPTGEGSTRSTAPT 93
+ + + S +V+ L K+ + + PT
Sbjct: 58 DYNIQKESTLHLVLRLRGGKKKNSYSTPKKVKPT 91
>gi|403287887|ref|XP_003935154.1| PREDICTED: polyubiquitin-B-like isoform 2 [Saimiri boliviensis
boliviensis]
Length = 83
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPHDQQRLIFAGKQLEDGRTLP 63
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 64 DYNIQKESTLYLVL 77
>gi|401416555|ref|XP_003872772.1| putative polyubiquitin [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322488997|emb|CBZ24246.1| putative polyubiquitin [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 128
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L++ TL
Sbjct: 1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEEGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|29425820|gb|AAO73559.1| polyubiquitin [Anas platyrhynchos]
gi|29425822|gb|AAO73560.1| polyubiquitin [Anas platyrhynchos]
Length = 115
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 37 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 93
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 94 DYNIQKESTLHLVL 107
>gi|158187894|gb|ABW23236.1| ribosomal protein rpl40 [Eurythoe complanata]
Length = 128
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|92790174|emb|CAI83756.1| Polyubiqutin 3 [Polyplastron multivesiculatum]
Length = 84
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 8 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 64
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 65 DYNIQKESTLHLVL 78
>gi|13021896|gb|AAK11574.1| humanized ubiquitin/L1 delta/H-2 Db CTL epitope hybrid protein
[synthetic construct]
Length = 558
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENS--FVVIMLTKNKRPT 82
+ + + S +V+ L RP+
Sbjct: 58 DYNIQKESTLHLVLRLRGAWRPS 80
>gi|428698046|pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
gi|428698047|pdb|3VDZ|B Chain B, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
Length = 111
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 92
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 93 DYNIQKESTLHLVL 106
>gi|306440515|pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 96
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 58
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 59 DYNIQKESTLHLVL 72
>gi|119624911|gb|EAX04506.1| ubiquitin B, isoform CRA_e [Homo sapiens]
Length = 152
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|159112981|ref|XP_001706718.1| Ubiquitin [Giardia lamblia ATCC 50803]
gi|157434817|gb|EDO79044.1| Ubiquitin [Giardia lamblia ATCC 50803]
Length = 82
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ ++K KI+ +G P QQ LI+ GK L+D+ TL+
Sbjct: 6 MQIFVKTLTGKTVTLEVEPTDTINNIKAKIQDKEG---IPPDQQRLIFSGKQLEDNRTLQ 62
Query: 62 ENKVAENSFVVIML 75
+ + +++ + ++L
Sbjct: 63 DYSIQKDATLHLVL 76
>gi|210076049|ref|XP_002143115.1| YALI0F18403p [Yarrowia lipolytica]
gi|199424967|emb|CAR65204.1| YALI0F18403p [Yarrowia lipolytica CLIB122]
Length = 77
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI +KTL G +++V+PED + +K KIE ++G P AQQ L++ GK L+D+ T+
Sbjct: 1 MKIKIKTLIGKEIEMDVEPEDQISVLKEKIEELEG---IPPAQQRLVFTGKQLQDEKTIA 57
Query: 62 ENKV 65
ENK+
Sbjct: 58 ENKI 61
>gi|5523969|gb|AAD44037.1|AF104020_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 318
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 186 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 242
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 243 DYNIQKESTLHLVL 256
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P Q+ LI+ GK L+D TL
Sbjct: 110 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQRRLIFAGKQLEDGRTLS 166
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 167 DYNIQKESTLHLVL 180
>gi|282601359|ref|ZP_05981478.2| ubiquitin family protein [Subdoligranulum variabile DSM 15176]
gi|282569316|gb|EFB74851.1| ubiquitin family [Subdoligranulum variabile DSM 15176]
Length = 721
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++FVK L G +EV+P D + DVK KI+ +G P +Q LI+ GK+L+D TL+
Sbjct: 76 MQVFVKRLAGKHITLEVEPTDRIEDVKQKIQDKEG---IPPERQRLIFAGKILEDGNTLQ 132
Query: 62 ENKVAENSFVVIM 74
+ + ++S + ++
Sbjct: 133 DYSIRKDSTIYLV 145
>gi|403287885|ref|XP_003935153.1| PREDICTED: polyubiquitin-B-like isoform 1 [Saimiri boliviensis
boliviensis]
gi|403287889|ref|XP_003935155.1| PREDICTED: polyubiquitin-B-like isoform 3 [Saimiri boliviensis
boliviensis]
Length = 77
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPHDQQRLIFAGKQLEDGRTLP 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLYLVL 71
>gi|366984599|gb|AEX09204.1| ribosomal protein L40 [Pandinus cavimanus]
Length = 128
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESPLHLVL 71
>gi|388857763|emb|CCF48657.1| probable polyubiquitin [Ustilago hordei]
Length = 228
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
>gi|339232996|ref|XP_003381615.1| ubiquitin family protein [Trichinella spiralis]
gi|316979549|gb|EFV62331.1| ubiquitin family protein [Trichinella spiralis]
Length = 189
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 75 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 131
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQS 98
+ + + S + ++L G T TA ++ S
Sbjct: 132 DYNIQKESTLHLVLRLRGGMRNFGKTDQTAISEVESS 168
>gi|196016140|ref|XP_002117924.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190579497|gb|EDV19591.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 99
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 58
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 59 DYNIQKESTLHLVL 72
>gi|295039418|emb|CBL53160.1| ubiquitin [Psammechinus miliaris]
Length = 128
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|123454697|ref|XP_001315100.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479152|ref|XP_001322735.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479160|ref|XP_001322739.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897766|gb|EAY02877.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905587|gb|EAY10512.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905591|gb|EAY10516.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 77
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 62 ENKVAENSFVVIML 75
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|225705166|gb|ACO08429.1| Ubiquitin [Oncorhynchus mykiss]
Length = 156
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPGQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLRLVL 71
>gi|326430331|gb|EGD75901.1| ubiquitin/ribosomal protein CEP52 [Salpingoeca sp. ATCC 50818]
Length = 128
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|323230|gb|AAA02769.1| polyprotein [Bovine viral diarrhea virus 1-Osloss]
Length = 3975
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D +L
Sbjct: 1591 MQIFVKTLTGRTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRSLS 1647
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1648 DYNIQKESTLHLVL 1661
>gi|392875502|gb|AFM86583.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK +I+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAEIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|15236291|ref|NP_192245.1| Ubiquitin family protein [Arabidopsis thaliana]
gi|4262165|gb|AAD14465.1| putative ubiquitin-like protein [Arabidopsis thaliana]
gi|7270206|emb|CAB77821.1| putative protein [Arabidopsis thaliana]
gi|67633728|gb|AAY78788.1| ubiquitin family protein [Arabidopsis thaliana]
gi|332656910|gb|AEE82310.1| Ubiquitin family protein [Arabidopsis thaliana]
Length = 284
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+K+ ++ G+SF ++V DTV +K KIE QG+ P ++Q+LI++ KVL+D +
Sbjct: 1 MIKVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGT---PVSKQILIFKRKVLQDHLNM 57
Query: 61 EENKVAENSFVVIMLTKNKRPT 82
++ NS +++ ++ + PT
Sbjct: 58 FGCQIRHNSRILLSISPDDNPT 79
>gi|324532777|gb|ADY49258.1| Polyubiquitin, partial [Ascaris suum]
Length = 187
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D V VK KI+ +G P QQ LI+ GK L+DD TL
Sbjct: 77 MQIFVKTLTGKTLTLEVEPSDAVQHVKAKIQDKEG---IPPDQQRLIFAGKQLEDDRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPTKAPQ 97
+ + + S + ++L K TG+ T P+ A Q
Sbjct: 58 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTLTLEVEPSDAVQ 100
>gi|312077797|ref|XP_003141460.1| ubiquitin/ribosomal fusion protein [Loa loa]
Length = 702
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 526 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 582
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 583 DYNIQKESTLHLVL 596
>gi|67614873|ref|XP_667394.1| ubiquitin / ribosomal protein CEP52 [Cryptosporidium hominis
TU502]
gi|54658521|gb|EAL37158.1| ubiquitin / ribosomal protein CEP52 [Cryptosporidium hominis]
gi|323510495|dbj|BAJ78141.1| cgd7_2280 [Cryptosporidium parvum]
Length = 128
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|66362872|ref|XP_628402.1| 60S ribosomal protein L40 [Cryptosporidium parvum Iowa II]
gi|46229800|gb|EAK90618.1| 60S ribosomal protein L40 [Cryptosporidium parvum Iowa II]
Length = 132
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 61
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 62 DYNIQKESTLHLVL 75
>gi|157873328|ref|XP_001685176.1| ubiquitin-fusion protein [Leishmania major strain Friedlin]
gi|157873354|ref|XP_001685189.1| ubiquitin-fusion protein [Leishmania major strain Friedlin]
gi|339898906|ref|XP_003392716.1| ubiquitin-fusion protein [Leishmania infantum JPCM5]
gi|339898910|ref|XP_003392717.1| ubiquitin-fusion protein [Leishmania infantum JPCM5]
gi|398020239|ref|XP_003863283.1| ubiquitin-fusion protein [Leishmania donovani]
gi|401426450|ref|XP_003877709.1| ubiquitin-fusion protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|401426476|ref|XP_003877722.1| ubiquitin-fusion protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|302393719|sp|P69201.2|RL40_LEIMA RecName: Full=Ubiquitin-60S ribosomal protein L40; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=60S
ribosomal protein L40; AltName: Full=CEP52; Flags:
Precursor
gi|484476|pir||JN0790 ubiquitin/ribosomal protein CEP52 fusion protein - Leishmania
major
gi|312488|emb|CAA51550.1| ubiquitin-fusion protein [Leishmania tarentolae]
gi|68128247|emb|CAJ08378.1| ubiquitin-fusion protein [Leishmania major strain Friedlin]
gi|68128260|emb|CAJ08391.1| ubiquitin-fusion protein [Leishmania major strain Friedlin]
gi|321398567|emb|CBZ08904.1| ubiquitin-fusion protein [Leishmania infantum JPCM5]
gi|321398569|emb|CBZ08905.1| ubiquitin-fusion protein [Leishmania infantum JPCM5]
gi|322493955|emb|CBZ29246.1| ubiquitin-fusion protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493968|emb|CBZ29259.1| ubiquitin-fusion protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322501515|emb|CBZ36594.1| ubiquitin-fusion protein [Leishmania donovani]
Length = 128
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L++ TL
Sbjct: 1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEEGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|156083999|ref|XP_001609483.1| ubiquitin / ribosomal protein CEP52 [Babesia bovis T2Bo]
gi|154796734|gb|EDO05915.1| ubiquitin / ribosomal protein CEP52 [Babesia bovis]
Length = 131
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|69608591|emb|CAJ01881.1| ubiquitin/ribosomal protein S27Ae fusion protein [Timarcha
balearica]
Length = 156
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK+KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKVKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|342326368|gb|AEL23099.1| ubiquitin [Cherax quadricarinatus]
Length = 99
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 79
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 80 DYNIQKESTLHLVL 93
>gi|510476|emb|CAA52419.1| ubiquitin unit IV [Artemia franciscana]
Length = 76
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ QG P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|403371844|gb|EJY85807.1| Ubiquitin [Oxytricha trifallax]
Length = 134
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGS 86
+ + + S + ++L R G+GS
Sbjct: 58 DYNIQKESTLHLVL--RLRGGGQGS 80
>gi|22549552|ref|NP_689325.1| ubi gene product [Mamestra configurata NPV-B]
gi|215401377|ref|YP_002332681.1| ubiquitin [Helicoverpa armigera multiple nucleopolyhedrovirus]
gi|22476731|gb|AAM95137.1| putative ubiquitin [Mamestra configurata NPV-B]
gi|198448877|gb|ACH88667.1| ubiquitin [Helicoverpa armigera multiple nucleopolyhedrovirus]
gi|390165345|gb|AFL64992.1| ubiquitin [Mamestra brassicae MNPV]
gi|401665753|gb|AFP95865.1| putative ubiquitin [Mamestra brassicae MNPV]
Length = 100
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + VEV+P DTV +K KI +G P QQ LIY GK L+D +T+
Sbjct: 1 MQIFVKTLTGKTVTVEVEPTDTVEQLKQKITDKEG---IPPDQQRLIYAGKQLEDSSTMS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|220897964|gb|ACL81256.1| ubiquitin [Plutella xylostella]
Length = 128
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIGNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESILHLVL 71
>gi|92790180|emb|CAI83759.1| Polyubiqutin 6 [Polyplastron multivesiculatum]
Length = 81
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 61
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 62 DYNIQKESTLHLVL 75
>gi|226484047|emb|CAX79692.1| ubiquitin C [Schistosoma japonicum]
Length = 229
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK LKD TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLKDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
>gi|84997964|ref|XP_953703.1| ubiquitin/60S ribosomal fusion protein [Theileria annulata]
gi|65304700|emb|CAI73025.1| ubiquitin/60S ribosomal fusion protein, putative [Theileria
annulata]
Length = 131
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|405113128|gb|AFR90239.1| ubiquitin-L40e ribosomal fusion protein [Sterkiella nova]
Length = 134
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGS 86
+ + + S + ++L R G+GS
Sbjct: 58 DYNIQKESTLHLVL--RLRGGGQGS 80
>gi|387592579|gb|EIJ87603.1| ubiquitin [Nematocida parisii ERTm3]
gi|387595206|gb|EIJ92831.1| ubiquitin [Nematocida parisii ERTm1]
Length = 132
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|82792659|gb|ABB91375.1| ubiquitin-53aa extension protein [Helicoverpa assulta]
Length = 129
Score = 55.8 bits (133), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G+ P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGT---PPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|403221428|dbj|BAM39561.1| Ubc protein [Theileria orientalis strain Shintoku]
Length = 131
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|110589533|gb|ABG77272.1| ubiquitin-53aa extension protein [Pieris rapae]
Length = 129
Score = 55.8 bits (133), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G+ P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGT---PPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|452819514|gb|EME26571.1| ubiquitin [Galdieria sulphuraria]
Length = 184
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|339232958|ref|XP_003381596.1| ubiquitin family protein [Trichinella spiralis]
gi|316979574|gb|EFV62350.1| ubiquitin family protein [Trichinella spiralis]
Length = 152
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DTV +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 71 MQIFVKTLTGKTITLEVEPSDTVENVKGKIQDKEG---IPPDQQRLIFAGKQLEDSRTLS 127
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 128 DYNIQKESTLHLVL 141
>gi|119619136|gb|EAW98730.1| hCG1790904, isoform CRA_b [Homo sapiens]
Length = 334
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
++IFVKTL+G + +EV+P D + +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 125
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTP 103
+ + K PT R K + S PTP
Sbjct: 126 DCNI------------QKEPTLHLLLRLCGVAKKRKKSYPTP 155
>gi|356927786|gb|AET42576.1| polyubiquitin [Emiliania huxleyi virus 202]
Length = 80
Score = 55.8 bits (133), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESNIHLVL 71
>gi|317055545|ref|YP_004104012.1| ubiquitin [Ruminococcus albus 7]
gi|315447814|gb|ADU21378.1| ubiquitin [Ruminococcus albus 7]
Length = 264
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI Q + +Q LI+ GK L+DD TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI---QDKESIAPNKQRLIFAGKQLEDDRTLA 57
Query: 62 ENKVAENSFVVIMLTKN 78
+ + + S + ++L N
Sbjct: 58 DYNIQKESTLHLVLRAN 74
>gi|71033899|ref|XP_766591.1| ubiquitin/ribosomal fusion protein [Theileria parva strain
Muguga]
gi|68353548|gb|EAN34308.1| ubiquitin/ribosomal fusion protein, putative [Theileria parva]
gi|428673439|gb|EKX74352.1| ubiquitin/ribosomal fusion protein, putative [Babesia equi]
Length = 131
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|440801804|gb|ELR22809.1| ubiquitin domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 147
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 62 ENKVAENSFVVIML------TKNKRPTGEGSTRSTAPT 93
+ + + S + ++L K K GE S R+ T
Sbjct: 58 DYNIQKESTLHLVLRLRGGGKKTKCCFGECSKRAVMIT 95
>gi|9629963|ref|NP_046181.1| ubiquitin-like protein [Orgyia pseudotsugata MNPV]
gi|464989|sp|Q05120.1|UBIL_NPVOP RecName: Full=Ubiquitin-like protein; Flags: Precursor
gi|7439566|pir||T10294 ubiquitin-like protein - Orgyia pseudotsugata nuclear
polyhedrosis virus
gi|222221|dbj|BAA02639.1| ubiquitin [Orgyia pseudotsugata single capsid
nuclopolyhedrovirus]
gi|1911271|gb|AAC59024.1| ubiquitin-like protein [Orgyia pseudotsugata MNPV]
Length = 93
Score = 55.8 bits (133), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + VE +P DTV VK KI +G P QQ LIY GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEG---VPVDQQRLIYAGKQLEDAQTLA 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHMVL 71
>gi|69608587|emb|CAJ01880.1| ubiquitin/ribosomal protein S27Ae fusion protein [Micromalthus
debilis]
Length = 156
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ V + S + ++L
Sbjct: 58 DYNVQKESTLHLVL 71
>gi|327358507|gb|AEA51100.1| ubiquitin, partial [Oryzias melastigma]
Length = 169
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 22 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 78
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 79 DYNIQKESTLHLVL 92
>gi|67191208|ref|NP_066289.2| polyubiquitin-C [Homo sapiens]
Length = 685
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P+ QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPSDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
>gi|56199434|gb|AAV84206.1| unknown [Culicoides sonorensis]
Length = 162
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 63
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 64 DYNIQKESTLHLVL 77
>gi|302393781|sp|P62976.2|UBIQP_CRIGR RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin;
Contains: RecName: Full=Ubiquitin-related 1; Contains:
RecName: Full=Ubiquitin-related 2; Flags: Precursor
gi|940395|dbj|BAA09853.1| polyubiquitin [Cricetulus sp.]
Length = 658
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ QG P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
>gi|312380774|gb|EFR26677.1| hypothetical protein AND_07080 [Anopheles darlingi]
Length = 567
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 143 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 199
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 200 DYNIQKESTLHLVL 213
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 219 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 275
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 276 DYNIQKESTLHLVL 289
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V P +TV D+K KIE +G D QQ +I+ GK L++ +
Sbjct: 1 MQIFVKTLTGKTITLDVVPTETVLDIKSKIEEREGID---PDQQRIIFAGKQLENGRIIS 57
Query: 62 ENKVAENSFVVIML 75
+ + S + ++L
Sbjct: 58 DYNIQHGSTMHLVL 71
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFV+ L G + ++ +PE TV VK +I+ + P QQ +I+ GK L+D TLE
Sbjct: 77 MQIFVRMLTGKTIAIDTEPEATVESVKKQIDE---REEIPPNQQRMIFAGKQLEDGRTLE 133
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT 93
E + + + + I + K TG+ T P+
Sbjct: 134 EYSIIKATNMQIFV---KTLTGKTITLEVEPS 162
>gi|154416733|ref|XP_001581388.1| ubiquitin [Trichomonas vaginalis G3]
gi|121915615|gb|EAY20402.1| ubiquitin, putative [Trichomonas vaginalis G3]
Length = 166
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 35 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 91
Query: 62 ENKVAENSFVVIML 75
+ + ++S + ++L
Sbjct: 92 DYSIQKDSTLHLVL 105
>gi|158771|gb|AAA29006.1| ubiquitin, partial [Drosophila melanogaster]
gi|225323|prf||1212243H ubiquitin S7(1)
Length = 76
Score = 55.8 bits (133), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKXLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|158767|gb|AAA29004.1| ubiquitin, partial [Drosophila melanogaster]
gi|225321|prf||1212243F ubiquitin S6(1)
Length = 76
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGX---PPDQQRLIFAGKXLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|367009798|ref|XP_003679400.1| hypothetical protein TDEL_0B00600 [Torulaspora delbrueckii]
gi|359747058|emb|CCE90189.1| hypothetical protein TDEL_0B00600 [Torulaspora delbrueckii]
Length = 369
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 2 MKIFVKTLKGTS-FDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M I V+ G S ++V V PE TV + K +I V S++ PAA Q LIY GK+LKDD +
Sbjct: 1 MSITVQVKCGQSKWEVSVNPEKTVAEFKDEIAKV--SEI-PAANQRLIYSGKILKDDQNV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT 109
E K+ + I L K+ G + +++ ++ ++AP A P+
Sbjct: 58 ESYKIQDGH--AIHLVKSGGGGGNTAAKASTSSQESNTAAPGSATVPSN 104
>gi|325190270|emb|CCA24746.1| unnamed protein product putative [Albugo laibachii Nc14]
Length = 138
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK+KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESTDTIDNVKVKIQDKEG---IPPDQQRLIFAGKQLEDGRTLN 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAV 115
+ + + S + ++L R G G + +A + TP T + A+
Sbjct: 58 DYNIQKESTLHLVL----RLRGGGKVHGSLA-RAGKVKGQTPNVTKQEGKKKAL 106
>gi|225704696|gb|ACO08194.1| Ubiquitin [Oncorhynchus mykiss]
Length = 128
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +E +P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEAEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|60598636|gb|AAX25867.1| unknown [Schistosoma japonicum]
Length = 183
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MHIFVKTLTGNTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M IFVKT G + +EV+P DT+ +VK KI+ +G P Q LI GK +D T
Sbjct: 77 MHIFVKTSTGKTITLEVEPSDTIENVKAKIQDKEG---IPPVQHRLISAGKQSEDGRTSS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYTIQKESTLHLVL 147
>gi|440904014|gb|ELR54587.1| Ubiquitin-60S ribosomal protein L40, partial [Bos grunniens
mutus]
Length = 131
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 60
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|148688761|gb|EDL20708.1| mCG1048340 [Mus musculus]
Length = 91
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|256087621|ref|XP_002579964.1| ubiquitin (ribosomal protein L40) [Schistosoma mansoni]
gi|3892189|gb|AAC78304.1| ubiquitin/ribosomal fusion protein [Schistosoma japonicum]
gi|226475088|emb|CAX71832.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226475090|emb|CAX71833.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226475092|emb|CAX71834.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226475094|emb|CAX71835.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226475096|emb|CAX71836.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477046|emb|CAX78176.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477048|emb|CAX78177.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477052|emb|CAX78179.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477054|emb|CAX78180.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477056|emb|CAX78181.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477058|emb|CAX78182.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477060|emb|CAX78183.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477064|emb|CAX78185.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477066|emb|CAX78186.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477068|emb|CAX78187.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477070|emb|CAX78188.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477072|emb|CAX78189.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477074|emb|CAX78190.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477076|emb|CAX78191.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477078|emb|CAX78192.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|238665464|emb|CAZ36203.1| ubiquitin (ribosomal protein L40), putative [Schistosoma mansoni]
Length = 128
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPADTIEAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|324525469|gb|ADY48551.1| Polyubiquitin, partial [Ascaris suum]
Length = 263
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D V VK KI+ +G P QQ LI+ GK L+DD TL
Sbjct: 153 MQIFVKTLTGKTLTLEVEPSDAVQHVKAKIQDKEG---IPPDQQRLIFAGKQLEDDRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++FVKTL G + +EV+P DT+ +VK+KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQLFVKTLTGKTITLEVEPSDTIENVKVKIQDKEG---IPPDQQRLIFAGKQLEDGRTLL 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPTKAPQ 97
+ + + S + ++L K TG+ T P+ A Q
Sbjct: 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTLTLEVEPSDAVQ 176
>gi|5523973|gb|AAD44039.1|AF104022_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 228
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 96 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 152
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 153 DYNIQKESTLHLVL 166
>gi|66361226|pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX
gi|66361228|pdb|1YX6|B Chain B, Solution Structure Of S5a Uim-2UBIQUITIN COMPLEX
Length = 98
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|442570892|pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin
Variant
Length = 76
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ L++ K L+D TL
Sbjct: 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQKLLFARKQLEDGRTLS 59
Query: 62 ENKVAENSFVVIML 75
+ + + SF+ ++L
Sbjct: 60 DYNIHKESFLYLVL 73
>gi|72172080|gb|AAZ66786.1| polyubiquitin [Ictalurus punctatus]
Length = 85
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 65
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 66 DYNIQKESTLHLVL 79
>gi|197107121|pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin
gi|270346285|pdb|2KJH|B Chain B, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
gi|377656643|pdb|4DHJ|D Chain D, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656651|pdb|4DHJ|H Chain H, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656655|pdb|4DHZ|E Chain E, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 76
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|397522294|ref|XP_003831209.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 1
[Pan paniscus]
gi|397522296|ref|XP_003831210.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 2
[Pan paniscus]
gi|397522298|ref|XP_003831211.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 3
[Pan paniscus]
gi|119624908|gb|EAX04503.1| ubiquitin B, isoform CRA_b [Homo sapiens]
gi|197129066|gb|ACH45564.1| putative ubiquitin C variant 10 [Taeniopygia guttata]
gi|431914472|gb|ELK15722.1| Ubiquitin [Pteropus alecto]
gi|440894339|gb|ELR46815.1| Polyubiquitin-B [Bos grunniens mutus]
Length = 77
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|417407935|gb|JAA50559.1| Putative ubiquitin-60s ribosomal protein, partial [Desmodus
rotundus]
Length = 132
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 61
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 62 DYNIQKESTLHLVL 75
>gi|324525461|gb|ADY48550.1| Polyubiquitin, partial [Ascaris suum]
Length = 263
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D V VK KI+ +G P QQ LI+ GK L+DD TL
Sbjct: 153 MQIFVKTLTGKTLTLEVEPSDAVQHVKAKIQDKEG---IPPDQQRLIFAGKQLEDDRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++FVKTL G + +EV+P DT+ +VK+KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQLFVKTLTGKTITLEVEPSDTIENVKVKIQDKEG---IPPDQQRLIFAGKQLEDGRTLL 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPTKAPQ 97
+ + + S + ++L K TG+ T P+ A Q
Sbjct: 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTLTLEVEPSDAVQ 176
>gi|72139704|ref|XP_789778.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like
[Strongylocentrotus purpuratus]
Length = 128
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D++ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|208891|gb|AAA72503.1| beta-galactosidase/ubiquitin fusion protein, partial [synthetic
construct]
Length = 116
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 65
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 66 DYNIQKESTLHLVL 79
>gi|13569612|gb|AAK31162.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
Length = 141
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 14 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 70
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 71 DYNIQKESTLHLVL 84
>gi|85719967|gb|ABC75552.1| ubiquitin and ribosomal protein S27a precursor [Ictalurus
punctatus]
Length = 114
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 11 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 67
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 68 DYNIQKESTLHLVL 81
>gi|61741149|gb|AAX54530.1| polyubiquitin [Fistulifera pelliculosa]
Length = 120
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 33 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 89
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 90 DYNIQKESTLHLVL 103
>gi|510473|emb|CAA52416.1| polyubiquitin [Artemia franciscana]
Length = 697
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ QG P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
>gi|323208|gb|AAA42855.1| nonstructural protein; putative helicase/protease; contains
duplication; contains ubiquitin-coding region; putative,
partial [Bovine viral diarrhea virus 1]
Length = 1896
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 990 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1046
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1047 DYNIQKESTLHLVL 1060
>gi|208568|gb|AAA72701.1| synthetic ubiquitin [synthetic construct]
Length = 76
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESCLHLVL 71
>gi|355703331|gb|EHH29822.1| Polyubiquitin-C [Macaca mulatta]
Length = 128
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P D + +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDAIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|219123892|ref|XP_002182250.1| ubiquitin extension protein 1/2 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217406211|gb|EEC46151.1| ubiquitin extension protein 1/2 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 128
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|148684097|gb|EDL16044.1| mCG13235 [Mus musculus]
Length = 134
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 7 MQIFVKTLMGKTITLEVEPSDTIENVKAKIQDKEG---LPPDQQRLIFAGKQLEDGHTLS 63
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 64 DYNIQKESTLHLVL 77
>gi|293353099|ref|XP_002728156.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Rattus
norvegicus]
gi|392333018|ref|XP_003752767.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Rattus
norvegicus]
Length = 77
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI Q + P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI---QDKESIPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + E S + ++L
Sbjct: 58 DYSIQEESTLHLVL 71
>gi|195190296|ref|XP_002029499.1| GL14086 [Drosophila persimilis]
gi|194103217|gb|EDW25260.1| GL14086 [Drosophila persimilis]
Length = 79
Score = 55.5 bits (132), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|61741081|gb|AAX54508.1| ubiquitin/ribosomal 27a [Marsupenaeus japonicus]
Length = 141
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|402904829|ref|XP_003915241.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 5 [Papio
anubis]
Length = 135
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 64
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 65 DYNIQKESTLHLVL 78
>gi|119624910|gb|EAX04505.1| ubiquitin B, isoform CRA_d [Homo sapiens]
Length = 116
Score = 55.5 bits (132), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|17136574|ref|NP_476778.1| ribosomal protein S27A [Drosophila melanogaster]
gi|194761816|ref|XP_001963119.1| GF15783 [Drosophila ananassae]
gi|194859914|ref|XP_001969479.1| GG10127 [Drosophila erecta]
gi|195050553|ref|XP_001992918.1| GH13542 [Drosophila grimshawi]
gi|195146884|ref|XP_002014414.1| GL18966 [Drosophila persimilis]
gi|195339809|ref|XP_002036509.1| GM18339 [Drosophila sechellia]
gi|195387453|ref|XP_002052410.1| GJ21841 [Drosophila virilis]
gi|195457480|ref|XP_002075583.1| GK18589 [Drosophila willistoni]
gi|195473659|ref|XP_002089110.1| GE18939 [Drosophila yakuba]
gi|195476197|ref|XP_002086031.1| RpS27A [Drosophila yakuba]
gi|195578195|ref|XP_002078951.1| GD23696 [Drosophila simulans]
gi|198476974|ref|XP_002136823.1| GA24218 [Drosophila pseudoobscura pseudoobscura]
gi|302393744|sp|P15357.2|RS27A_DROME RecName: Full=Ubiquitin-40S ribosomal protein S27a; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|158755|gb|AAA28998.1| ubiquitin-hybrid protein precursor [Drosophila melanogaster]
gi|7297689|gb|AAF52941.1| ribosomal protein S27A [Drosophila melanogaster]
gi|25012622|gb|AAN71408.1| RE44350p [Drosophila melanogaster]
gi|38047521|gb|AAR09663.1| similar to Drosophila melanogaster RpS27A, partial [Drosophila
yakuba]
gi|38048335|gb|AAR10070.1| similar to Drosophila melanogaster RpS27A, partial [Drosophila
yakuba]
gi|190616816|gb|EDV32340.1| GF15783 [Drosophila ananassae]
gi|190661346|gb|EDV58538.1| GG10127 [Drosophila erecta]
gi|193899977|gb|EDV98843.1| GH13542 [Drosophila grimshawi]
gi|194106367|gb|EDW28410.1| GL18966 [Drosophila persimilis]
gi|194130389|gb|EDW52432.1| GM18339 [Drosophila sechellia]
gi|194148867|gb|EDW64565.1| GJ21841 [Drosophila virilis]
gi|194171668|gb|EDW86569.1| GK18589 [Drosophila willistoni]
gi|194175211|gb|EDW88822.1| GE18939 [Drosophila yakuba]
gi|194185890|gb|EDW99501.1| RpS27A [Drosophila yakuba]
gi|194190960|gb|EDX04536.1| GD23696 [Drosophila simulans]
gi|198145148|gb|EDY71852.1| GA24218 [Drosophila pseudoobscura pseudoobscura]
gi|220950462|gb|ACL87774.1| RpS27A-PA [synthetic construct]
gi|220959398|gb|ACL92242.1| RpS27A-PA [synthetic construct]
gi|255760108|gb|ACU32638.1| SD13292p [Drosophila melanogaster]
Length = 156
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|354483686|ref|XP_003504023.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Cricetulus
griseus]
Length = 156
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|345567561|gb|EGX50491.1| hypothetical protein AOL_s00075g220 [Arthrobotrys oligospora ATCC
24927]
Length = 148
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRST 90
+ + + S + ++L R G G R T
Sbjct: 58 DYNIQKESTLHLVL----RLRGGGKPRCT 82
>gi|9372|emb|CAA49657.1| ubiquitin [Giardia intestinalis]
Length = 76
Score = 55.5 bits (132), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ ++K KI+ +G P QQ LI+ GK L+D+ TL+
Sbjct: 1 MQIFVKTLTGKTVTLEVEPTDTINNIKAKIQDKEG---IPPDQQRLIFSGKQLEDNRTLQ 57
Query: 62 ENKVAENSFVVIML 75
+ + +++ + ++L
Sbjct: 58 DYSIQKDATLHLVL 71
>gi|554564|gb|AAA72502.1| beta-galactosidase/ubiquitin fusion protein, partial [synthetic
construct]
Length = 106
Score = 55.5 bits (132), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 62
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 63 DYNIQKESTLHLVL 76
>gi|281204902|gb|EFA79096.1| ubiquitin [Polysphondylium pallidum PN500]
Length = 128
Score = 55.5 bits (132), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEGSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENS--FVVIMLTKNKRPTGEGSTRS 89
+ + + S +V+ L PT RS
Sbjct: 58 DYNIQKESTLHLVLRLRGGLEPTLAALARS 87
>gi|417408300|gb|JAA50711.1| Putative ribosomal protein s27a, partial [Desmodus rotundus]
Length = 166
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 11 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 67
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 68 DYNIQKESTLHLVL 81
>gi|123316118|gb|ABM74399.1| ubiquitin [Portunus pelagicus]
Length = 154
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|91077776|ref|XP_969023.1| PREDICTED: similar to ubiquitin/S27Ae ribosomal protein
[Tribolium castaneum]
gi|270002242|gb|EEZ98689.1| hypothetical protein TcasGA2_TC001225 [Tribolium castaneum]
Length = 156
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|69608566|emb|CAJ01876.1| ubiquitin/ribosomal protein S27Ae fusion protein [Agriotes
lineatus]
Length = 157
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|50344522|emb|CAH04347.1| ubiquitin/S27Ae ribosomal protein [Carabus granulatus]
gi|50344524|emb|CAH04348.1| ubiquitin/S27Ae ribosomal protein [Biphyllus lunatus]
gi|69608571|emb|CAJ01877.1| ubiquitin/ribosomal protein S27Ae fusion protein [Cicindela
campestris]
Length = 156
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|302393720|sp|P69200.2|RL40_LEITA RecName: Full=Ubiquitin-60S ribosomal protein L40; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=60S
ribosomal protein L40; AltName: Full=CEP52; Flags:
Precursor
gi|312486|emb|CAA51549.1| ubiquitin-fusion protein [Leishmania tarentolae]
Length = 128
Score = 55.5 bits (132), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL GT+ +EV+P DT+ +VK KI+ +G P QQ LI+ K L++ TL
Sbjct: 1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFADKQLEEGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|312371071|gb|EFR19336.1| hypothetical protein AND_22679 [Anopheles darlingi]
Length = 156
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|253746108|gb|EET01613.1| Ubiquitin [Giardia intestinalis ATCC 50581]
gi|308160019|gb|EFO62531.1| Ubiquitin [Giardia lamblia P15]
Length = 77
Score = 55.5 bits (132), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ ++K KI+ +G P QQ LI+ GK L+D+ TL+
Sbjct: 1 MQIFVKTLTGKTVTLEVEPTDTINNIKAKIQDKEG---IPPDQQRLIFSGKQLEDNRTLQ 57
Query: 62 ENKVAENSFVVIML 75
+ + +++ + ++L
Sbjct: 58 DYSIQKDATLHLVL 71
>gi|92790178|emb|CAI83758.1| Polyubiqutin 5 [Polyplastron multivesiculatum]
Length = 220
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 68 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 124
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 125 DYNIQKESTLHLVL 138
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 144 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 200
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 201 DYNIQKESTLHLVL 214
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSF 70
G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL + + + S
Sbjct: 1 GKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLADYNIQKEST 57
Query: 71 VVIML 75
+ ++L
Sbjct: 58 LHLVL 62
>gi|428168160|gb|EKX37108.1| ubiquitin [Guillardia theta CCMP2712]
Length = 199
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 53 MQIFVKTLTGKTITLEVESSDTIDMVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 109
Query: 62 ENKVAENSFVVIMLTKN---KRPTGEGSTRSTAP 92
+ + + S + ++L K+ EG T AP
Sbjct: 110 DYNIQKESTLHLVLRLRGGAKKCNHEGCTSKVAP 143
>gi|156405092|ref|XP_001640566.1| predicted protein [Nematostella vectensis]
gi|156227701|gb|EDO48503.1| predicted protein [Nematostella vectensis]
Length = 157
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|229368168|gb|ACQ59064.1| Ubiquitin [Anoplopoma fimbria]
Length = 156
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|125742521|gb|ABN54483.1| putative ubiquitin/ribosomal protein S27Ae fusion protein
[Oncopeltus fasciatus]
Length = 156
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|20070031|ref|NP_613235.1| v-ubiquitin [Mamestra configurata NPV-A]
gi|20043425|gb|AAM09260.1| v-ubiquitin [Mamestra configurata NPV-A]
gi|33331863|gb|AAQ11171.1| putative ubiquitin [Mamestra configurata NPV-A]
Length = 100
Score = 55.5 bits (132), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + VEV+P DTV +K KI +G P QQ LIY GK L+D +T+
Sbjct: 1 MQIFVKTLTGKTVTVEVEPTDTVEQLKQKITDKEG---IPPDQQRLIYAGKQLEDSSTMS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|149063233|gb|EDM13556.1| rCG21222, isoform CRA_b [Rattus norvegicus]
Length = 179
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 54 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 110
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 111 DYNIQKESTLHLVL 124
>gi|94378076|ref|XP_001002242.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Mus
musculus]
Length = 156
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|294860860|gb|ADF45326.1| ubiquitin/ribosomal S27 fusion protein 2 [Eriocheir sinensis]
Length = 157
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|422292930|gb|EKU20231.1| UV excision repair protein RAD23, partial [Nannochloropsis gaditana
CCMP526]
Length = 575
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 42/60 (70%)
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
SL+ R PQF LR +VQ+NP + +L +G+Q+PQL+++I Q +F+ ++NEP++G
Sbjct: 381 SLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEG 440
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 30 KIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81
K++ ++G + A +Q + +GKVLKDD T+E V E F V M++ +P
Sbjct: 226 KVKKLEGVE-EGAEKQARVVKGKVLKDDDTIESTGVTETDFYVCMVSAAPKP 276
>gi|392340649|ref|XP_003754135.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|392348302|ref|XP_003750066.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|148673267|gb|EDL05214.1| mCG54232 [Mus musculus]
gi|148678405|gb|EDL10352.1| mCG23377, isoform CRA_b [Mus musculus]
gi|149035463|gb|EDL90144.1| rCG50143 [Rattus norvegicus]
Length = 77
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|9634344|ref|NP_037883.1| ORF123 v-ubiquitin [Spodoptera exigua MNPV]
gi|6960582|gb|AAF33652.1| ORF123 v-ubiquitin [Spodoptera exigua MNPV]
Length = 80
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + VEV+ DTV VK KI +G P QQ LIY GK L+D T+
Sbjct: 1 MQIFVKTLTGKTVTVEVESTDTVEQVKQKITDKEG---IPPDQQRLIYAGKQLEDTRTMS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|342356447|gb|AEL28882.1| ribosomal protein L40 [Heliconius melpomene cythera]
Length = 129
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|195116685|ref|XP_002002882.1| GI10618 [Drosophila mojavensis]
gi|193913457|gb|EDW12324.1| GI10618 [Drosophila mojavensis]
Length = 156
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|149044848|gb|EDL98034.1| rCG23287, isoform CRA_b [Rattus norvegicus]
gi|149044849|gb|EDL98035.1| rCG23287, isoform CRA_b [Rattus norvegicus]
Length = 145
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|56078799|gb|AAH53371.1| Ribosomal protein S27a [Homo sapiens]
Length = 156
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|92790176|emb|CAI83757.1| Polyubiqutin 4 [Polyplastron multivesiculatum]
Length = 177
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 25 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 81
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 82 DYNIQKESTLHLVL 95
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 101 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 157
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 158 DYNIQKESTLHLVL 171
>gi|65306618|gb|AAY41882.1| ubiquitin [Gracilaria lemaneiformis]
Length = 128
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ D++ +VK KI+ +G P QQ LI+ GK L+DD TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEG---IPPDQQRLIFAGKQLEDDRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|342906196|gb|AEL79381.1| ubiquitin [Rhodnius prolixus]
Length = 81
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 61
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 62 DYNIQKESTLHLVL 75
>gi|302393707|sp|P49633.2|RL40_ACACA RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|498793|emb|CAA53293.1| ubiquitin-fusion protein [Acanthamoeba castellanii]
Length = 128
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|342905972|gb|AEL79269.1| ubiquitin/40S ribosomal protein S27a fusion [Rhodnius prolixus]
Length = 108
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 21 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLS 77
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 78 DYNIQKESTLHLVL 91
>gi|371639063|gb|AEX55073.1| ubiquitin [Salvelinus alpinus]
Length = 128
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTAKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|387914190|gb|AFK10704.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|5523985|gb|AAD44045.1|AF104028_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 357
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 225 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 281
Query: 62 ENKVAENSFVVIML 75
+ + S + ++L
Sbjct: 282 GYNIQKESTLHLVL 295
>gi|1167510|dbj|BAA09096.1| TI-225 [Mus musculus]
Length = 126
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392877630|gb|AFM87647.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|92790172|emb|CAI83755.1| Polyubiqutin 2 [Polyplastron multivesiculatum]
Length = 346
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 42 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 98
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 99 DYNIQKESTLHLVL 112
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 118 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 174
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 175 DYNIQKESTLHLVL 188
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 194 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 250
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 251 DYNIQKESTLHLVL 264
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 270 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 326
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 327 DYNIQKESTLHLVL 340
>gi|29612581|gb|AAH49478.1| Zgc:66168 protein, partial [Danio rerio]
Length = 172
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 17 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 73
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 74 DYNIQKESTLHLVL 87
>gi|326437416|gb|EGD82986.1| neural cell expressed [Salpingoeca sp. ATCC 50818]
Length = 79
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+I VKTL G +++V+P+DT+ VK K+E QG P QQ LIY GK L D TL+
Sbjct: 1 MQIKVKTLTGREIELDVEPDDTMLQVKEKLEEKQG---IPPEQQRLIYAGKPLNDSKTLK 57
Query: 62 ENKVAENSFVVIML 75
+ K+ + ++L
Sbjct: 58 DCKIESGCTIHLVL 71
>gi|430800751|pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
Length = 91
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFV TL GT +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 74
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 75 DYNIQKESTLHLVL 88
>gi|399217583|emb|CCF74470.1| unnamed protein product [Babesia microti strain RI]
Length = 282
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>gi|208435644|pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
gi|208435648|pdb|3DVN|X Chain X, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
gi|208435652|pdb|3DVN|U Chain U, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 80
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 60
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|124514026|ref|XP_001350369.1| 60S ribosomal protein L40/UBI, putative [Plasmodium falciparum
3D7]
gi|23615786|emb|CAD52778.1| 60S ribosomal protein L40/UBI, putative [Plasmodium falciparum
3D7]
Length = 128
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|195337251|ref|XP_002035242.1| GM14032 [Drosophila sechellia]
gi|194128335|gb|EDW50378.1| GM14032 [Drosophila sechellia]
Length = 915
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTINLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 741
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 893
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G + P QQ LI+ GK L+D TL
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--ISP-DQQRLIFAGKQLEDGRTLS 817
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 818 DYNIQKESTLHLVL 831
>gi|195164961|ref|XP_002023314.1| GL20619 [Drosophila persimilis]
gi|194105419|gb|EDW27462.1| GL20619 [Drosophila persimilis]
Length = 231
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 154 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 210
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 211 DYNIQKESTLHLVL 224
>gi|90819968|gb|ABD98741.1| putative ubiquitin/ribosomal protein S27Ae fusion protein
[Graphocephala atropunctata]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|397614491|gb|EJK62831.1| hypothetical protein THAOC_16543 [Thalassiosira oceanica]
Length = 240
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 164 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 220
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 221 DYNIQKESTLHLVL 234
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
++IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 87 FLQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 143
Query: 61 EENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 144 SDYNIQKESTLHLVL 158
>gi|225715160|gb|ACO13426.1| Ubiquitin [Esox lucius]
Length = 92
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|194246105|gb|ACF35544.1| ubiquitin/ribosomal protein S27a fusion protein [Dermacentor
variabilis]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|18071662|gb|AAL55470.1| ubiquitin/ribosomal protein S27a fusion protein [Branchiostoma
belcheri tsingtauense]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|323454622|gb|EGB10492.1| hypothetical protein AURANDRAFT_23768 [Aureococcus
anophagefferens]
Length = 217
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|197632563|gb|ACH71005.1| ribosomal protein S27-3 [Salmo salar]
gi|209731700|gb|ACI66719.1| Ubiquitin [Salmo salar]
gi|223646226|gb|ACN09871.1| Ubiquitin [Salmo salar]
gi|223672073|gb|ACN12218.1| Ubiquitin [Salmo salar]
gi|290561194|gb|ADD37999.1| Ubiquitin [Lepeophtheirus salmonis]
gi|303660799|gb|ADM16009.1| Ubiquitin [Salmo salar]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|309265697|ref|XP_003086579.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Mus
musculus]
Length = 155
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|188572494|gb|ACD65153.1| putative ubiquitin/40S ribosomal protein RPS27A fusion protein
[Phoronis muelleri]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|5523971|gb|AAD44038.1|AF104021_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 177
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 45 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 101
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 102 DYNIQKESTLHLVL 115
>gi|47604951|ref|NP_990284.1| ubiquitin-40S ribosomal protein S27a [Gallus gallus]
gi|224047492|ref|XP_002199635.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Taeniopygia
guttata]
gi|302393814|sp|P79781.3|RS27A_CHICK RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|1763015|gb|AAC60279.1| ubiquitin/ribosomal protein [Gallus gallus]
gi|300676798|gb|ADK26674.1| ribosomal protein S27a [Zonotrichia albicollis]
gi|300676895|gb|ADK26767.1| ribosomal protein S27a [Zonotrichia albicollis]
gi|387018372|gb|AFJ51304.1| Ubiquitin-40S ribosomal protein S27a-like [Crotalus adamanteus]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|395854973|ref|XP_003799950.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Otolemur
garnettii]
Length = 155
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGDTLS 57
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT 93
+ + + S + ++L R G R + T
Sbjct: 58 DYNIQKESTLHLVL----RLCGGAKKRKKSYT 85
>gi|157136377|ref|XP_001663729.1| ubiquitin (ribosomal protein L40) [Aedes aegypti]
gi|170033238|ref|XP_001844485.1| ribosomal protein S27a [Culex quinquefasciatus]
gi|56417532|gb|AAV90707.1| ribosomal protein S27a [Aedes albopictus]
gi|108869978|gb|EAT34203.1| AAEL013536-PA [Aedes aegypti]
gi|167873892|gb|EDS37275.1| ribosomal protein S27a [Culex quinquefasciatus]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|4506713|ref|NP_002945.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]
gi|27807503|ref|NP_777203.1| ubiquitin-40S ribosomal protein S27a [Bos taurus]
gi|62859181|ref|NP_001016172.1| ribosomal protein S27a [Xenopus (Silurana) tropicalis]
gi|148222699|ref|NP_001086065.1| ribosomal protein S27a [Xenopus laevis]
gi|208022622|ref|NP_001129064.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]
gi|290543388|ref|NP_001166537.1| ubiquitin-40S ribosomal protein S27a [Cavia porcellus]
gi|294459921|ref|NP_001170884.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]
gi|302191655|ref|NP_001180515.1| 40S ribosomal protein S27a [Macaca mulatta]
gi|356582340|ref|NP_001239157.1| 40S ribosomal protein S27a [Canis lupus familiaris]
gi|357588518|ref|NP_001239528.1| 40S ribosomal protein S27a [Pan troglodytes]
gi|126303852|ref|XP_001375230.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Monodelphis
domestica]
gi|149640802|ref|XP_001509244.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 1
[Ornithorhynchus anatinus]
gi|149727572|ref|XP_001496841.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Equus
caballus]
gi|291416370|ref|XP_002724420.1| PREDICTED: ubiquitin and ribosomal protein S27a-like [Oryctolagus
cuniculus]
gi|296202145|ref|XP_002748274.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
gi|296212949|ref|XP_002753065.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
gi|296223829|ref|XP_002757792.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
gi|301756480|ref|XP_002914089.1| PREDICTED: hypothetical protein LOC100476697 [Ailuropoda
melanoleuca]
gi|311252615|ref|XP_003125184.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa]
gi|311252617|ref|XP_003125185.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa]
gi|395829680|ref|XP_003787974.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Otolemur
garnettii]
gi|397521616|ref|XP_003830888.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 1 [Pan
paniscus]
gi|397521618|ref|XP_003830889.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 2 [Pan
paniscus]
gi|402890909|ref|XP_003908711.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 1 [Papio
anubis]
gi|402890911|ref|XP_003908712.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 2 [Papio
anubis]
gi|402890913|ref|XP_003908713.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 3 [Papio
anubis]
gi|402890915|ref|XP_003908714.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 4 [Papio
anubis]
gi|402891098|ref|XP_003908796.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Papio
anubis]
gi|403260664|ref|XP_003922781.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Saimiri
boliviensis boliviensis]
gi|410035085|ref|XP_003949844.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 1
[Pan troglodytes]
gi|410035087|ref|XP_003949845.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 2
[Pan troglodytes]
gi|410954815|ref|XP_003984057.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Felis catus]
gi|426223661|ref|XP_004005993.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Ovis aries]
gi|426335589|ref|XP_004029299.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 1
[Gorilla gorilla gorilla]
gi|426335591|ref|XP_004029300.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 2
[Gorilla gorilla gorilla]
gi|426335593|ref|XP_004029301.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 3
[Gorilla gorilla gorilla]
gi|426335595|ref|XP_004029302.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 4
[Gorilla gorilla gorilla]
gi|302393745|sp|P62979.2|RS27A_HUMAN RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|302393754|sp|P62992.2|RS27A_BOVIN RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|302393755|sp|P62978.2|RS27A_CAVPO RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|70656|pir||UQHUR7 ubiquitin / ribosomal protein S27a, cytosolic [validated] - human
gi|37571|emb|CAA44911.1| ubiquitin [Homo sapiens]
gi|243888|gb|AAB21188.1| ubiquitin carboxyl extension protein [Homo sapiens]
gi|1197091|dbj|BAA11843.1| ubiquitin extention protein [Cavia porcellus]
gi|3885465|gb|AAC77907.1| ubiquitin-S27a fusion protein [Bos taurus]
gi|12655083|gb|AAH01392.1| Ribosomal protein S27a [Homo sapiens]
gi|42542651|gb|AAH66293.1| Ribosomal protein S27a [Homo sapiens]
gi|49257574|gb|AAH74147.1| MGC81889 protein [Xenopus laevis]
gi|67970806|dbj|BAE01745.1| unnamed protein product [Macaca fascicularis]
gi|89268219|emb|CAJ83451.1| ribosomal protein S27a [Xenopus (Silurana) tropicalis]
gi|119620513|gb|EAX00108.1| ribosomal protein S27a, isoform CRA_c [Homo sapiens]
gi|119620515|gb|EAX00110.1| ribosomal protein S27a, isoform CRA_c [Homo sapiens]
gi|134254273|gb|AAI35494.1| hypothetical protein LOC548926 [Xenopus (Silurana) tropicalis]
gi|158454992|gb|AAI02492.2| Ribosomal protein S27a [Bos taurus]
gi|189055074|dbj|BAG38058.1| unnamed protein product [Homo sapiens]
gi|261861184|dbj|BAI47114.1| ribosomal protein S27a [synthetic construct]
gi|296482560|tpg|DAA24675.1| TPA: 40S ribosomal protein S27a [Bos taurus]
gi|312153372|gb|ADQ33198.1| ribosomal protein S27a [synthetic construct]
gi|351702806|gb|EHB05725.1| 40S ribosomal protein S27a [Heterocephalus glaber]
gi|355565699|gb|EHH22128.1| hypothetical protein EGK_05333 [Macaca mulatta]
gi|383410367|gb|AFH28397.1| ubiquitin-40S ribosomal protein S27a precursor [Macaca mulatta]
gi|383410369|gb|AFH28398.1| ubiquitin-40S ribosomal protein S27a precursor [Macaca mulatta]
gi|384948690|gb|AFI37950.1| ubiquitin-40S ribosomal protein S27a precursor [Macaca mulatta]
gi|387540568|gb|AFJ70911.1| ubiquitin-40S ribosomal protein S27a precursor [Macaca mulatta]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|13172895|gb|AAK14239.1|AF321441_1 polyubiquitin GmUblast [Galleria mellonella]
Length = 77
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392868457|gb|EJB11501.1| ubiquitin-60S ribosomal protein L40, variant [Coccidioides
immitis RS]
Length = 103
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|289526477|pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2-
Ubiquitin Complex
gi|306440517|pdb|3K9P|B Chain B, The Crystal Structure Of E2-25k And Ubiquitin Complex
gi|313754429|pdb|3OJ3|A Chain A, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754430|pdb|3OJ3|B Chain B, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754431|pdb|3OJ3|C Chain C, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754432|pdb|3OJ3|D Chain D, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754433|pdb|3OJ3|E Chain E, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754434|pdb|3OJ3|F Chain F, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754435|pdb|3OJ3|G Chain G, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754436|pdb|3OJ3|H Chain H, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754446|pdb|3OJ4|B Chain B, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
gi|313754449|pdb|3OJ4|E Chain E, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
gi|332639783|pdb|3PTF|C Chain C, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
gi|332639784|pdb|3PTF|D Chain D, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
Length = 79
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 60
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|13195690|ref|NP_077239.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus]
gi|13592077|ref|NP_112375.1| ubiquitin-40S ribosomal protein S27a [Rattus norvegicus]
gi|76443694|ref|NP_001029037.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus]
gi|392333172|ref|XP_003752815.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|392353337|ref|XP_003751469.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|302393751|sp|P62983.2|RS27A_MOUSE RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|302393757|sp|P62982.2|RS27A_RAT RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|1050756|emb|CAA57432.1| fusion protein: ubiquitin (bases 43_513); ribosomal protein S27a
(bases 217_532) [Rattus norvegicus]
gi|12805285|gb|AAH02108.1| Ribosomal protein S27A [Mus musculus]
gi|12858551|dbj|BAB31357.1| unnamed protein product [Mus musculus]
gi|37194821|gb|AAH58139.1| Ribosomal protein S27a [Rattus norvegicus]
gi|51980723|gb|AAH81446.1| Ribosomal protein S27A [Mus musculus]
gi|66570876|gb|AAH96392.1| Ribosomal protein S27A [Mus musculus]
gi|148691854|gb|EDL23801.1| mCG13441 [Mus musculus]
gi|148694516|gb|EDL26463.1| mCG15222 [Mus musculus]
gi|149044846|gb|EDL98032.1| rCG23287, isoform CRA_a [Rattus norvegicus]
gi|149044847|gb|EDL98033.1| rCG23287, isoform CRA_a [Rattus norvegicus]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|357529042|gb|AET80727.1| polyubiquitin [Pinctada fucata]
Length = 77
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|336377749|gb|EGO18909.1| hypothetical protein SERLADRAFT_402972 [Serpula lacrymans var.
lacrymans S7.9]
Length = 78
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G +P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---FPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|339262230|ref|XP_003367510.1| putative ubiquitin family protein [Trichinella spiralis]
gi|316959706|gb|EFV47730.1| putative ubiquitin family protein [Trichinella spiralis]
Length = 197
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 50 MQIFVKTLTGKTITLEVEPSDTIQNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 106
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 107 DYNIQKESTLHLVL 120
>gi|302566232|pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin
gi|302566233|pdb|3NOB|B Chain B, Structure Of K11-Linked Di-Ubiquitin
gi|302566234|pdb|3NOB|C Chain C, Structure Of K11-Linked Di-Ubiquitin
gi|302566235|pdb|3NOB|D Chain D, Structure Of K11-Linked Di-Ubiquitin
gi|302566236|pdb|3NOB|E Chain E, Structure Of K11-Linked Di-Ubiquitin
gi|302566237|pdb|3NOB|F Chain F, Structure Of K11-Linked Di-Ubiquitin
gi|302566238|pdb|3NOB|G Chain G, Structure Of K11-Linked Di-Ubiquitin
gi|302566239|pdb|3NOB|H Chain H, Structure Of K11-Linked Di-Ubiquitin
Length = 78
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 59
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 60 DYNIQKESTLHLVL 73
>gi|62089150|dbj|BAD93019.1| ubiquitin C variant [Homo sapiens]
Length = 1309
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 17 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 73
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 74 DYNIQKESTLHLVL 87
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 93 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 149
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 150 DYNIQKESTLHLVL 163
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 169 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 225
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 226 DYNIQKESTLHLVL 239
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 245 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 301
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 302 DYNIQKESTLHLVL 315
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 321 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 377
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 378 DYNIQKESTLHLVL 391
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 397 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 453
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 454 DYNIQKESTLHLVL 467
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 473 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 529
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 530 DYNIQKESTLHLVL 543
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 549 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 605
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 606 DYNIQKESTLHLVL 619
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 625 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 681
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 682 DYNIQKESTLHLVL 695
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 701 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 757
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 758 DYNIQKESTLHLVL 771
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 777 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 833
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 834 DYNIQKESTLHLVL 847
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 853 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 909
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 910 DYNIQKESTLHLVL 923
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 929 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 985
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 986 DYNIQKESTLHLVL 999
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1005 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1061
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1062 DYNIQKESTLHLVL 1075
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1081 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1137
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1138 DYNIQKESTLHLVL 1151
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1213
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1214 DYNIQKESTLHLVL 1227
Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L++ TL
Sbjct: 1233 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLENGRTLS 1289
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 1290 DYNIQKESTLHLVL 1303
>gi|426247174|ref|XP_004017361.1| PREDICTED: polyubiquitin-C-like isoform 1 [Ovis aries]
Length = 462
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK+KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKVKIQEKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
>gi|225705126|gb|ACO08409.1| Ubiquitin [Oncorhynchus mykiss]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|164510092|emb|CAJ32650.1| ubiquitin [Mytilus edulis]
Length = 228
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D +TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQSLIFAGKQLEDGSTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D +TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQSLIFAGKQLEDGSTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ L++ GK L+D +TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQSLMFAGKQLEDGSTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>gi|119619135|gb|EAW98729.1| hCG1790904, isoform CRA_a [Homo sapiens]
Length = 177
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
++IFVKTL+G + +EV+P D + +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 52 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 108
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTP 103
+ + K PT R K + S PTP
Sbjct: 109 DCNI------------QKEPTLHLLLRLCGVAKKRKKSYPTP 138
>gi|392874038|gb|AFM85851.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392874278|gb|AFM85971.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392874794|gb|AFM86229.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392875122|gb|AFM86393.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392875212|gb|AFM86438.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392875294|gb|AFM86479.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392875394|gb|AFM86529.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392875518|gb|AFM86591.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392875602|gb|AFM86633.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392876790|gb|AFM87227.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392877316|gb|AFM87490.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392877846|gb|AFM87755.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392882382|gb|AFM90023.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392882466|gb|AFM90065.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392883624|gb|AFM90644.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392884160|gb|AFM90912.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392884208|gb|AFM90936.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
gi|392884248|gb|AFM90956.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|160877884|pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A
gi|160877885|pdb|2ZCB|B Chain B, Crystal Structure Of Ubiquitin P37aP38A
gi|160877886|pdb|2ZCB|C Chain C, Crystal Structure Of Ubiquitin P37aP38A
Length = 76
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G A QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IAADQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|119620514|gb|EAX00109.1| ribosomal protein S27a, isoform CRA_d [Homo sapiens]
Length = 87
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKV 65
+ +
Sbjct: 58 DYNI 61
>gi|92790168|emb|CAI83753.1| Polyubiqutin 1 [Metadinium medium]
Length = 83
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 7 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 63
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 64 DYNIQKESTLHLVL 77
>gi|41055516|ref|NP_956796.1| 40S ribosomal protein S27a [Danio rerio]
gi|318884065|ref|NP_001187222.1| ubiquitin-40S ribosomal protein S27a [Ictalurus punctatus]
gi|348536082|ref|XP_003455526.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Oreochromis
niloticus]
gi|410900612|ref|XP_003963790.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Takifugu
rubripes]
gi|302393746|sp|P68200.2|RS27A_ICTPU RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|15294071|gb|AAK95212.1|AF402838_1 40S ribosomal protein S27a [Ictalurus punctatus]
gi|33585739|gb|AAH55524.1| Zgc:66168 [Danio rerio]
gi|124300843|dbj|BAF45917.1| ribosomal protein S27a [Solea senegalensis]
gi|167860808|gb|ACA05172.1| ribosomal protein S27a [Oncorhynchus masou formosanus]
gi|182891012|gb|AAI64449.1| Zgc:66168 protein [Danio rerio]
gi|221219368|gb|ACM08345.1| Ubiquitin [Salmo salar]
gi|225707998|gb|ACO09845.1| Ubiquitin [Osmerus mordax]
gi|229366594|gb|ACQ58277.1| Ubiquitin [Anoplopoma fimbria]
gi|305690487|gb|ADM64585.1| ribosomal protein S27a [Hypophthalmichthys nobilis]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|86370988|gb|ABC94632.1| ubiquitin C [Ictalurus punctatus]
Length = 192
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 116 MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 172
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 173 DYNIQKESTLHLVL 186
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 40 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 96
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 97 DYNIQKESTLHLVL 110
>gi|29169226|gb|AAO66467.1| polyubiquitin [Camelus dromedarius]
Length = 108
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 39 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 95
Query: 62 ENKVAENS 69
+ + + S
Sbjct: 96 DYNIQKES 103
>gi|209603|gb|AAA72816.1| ubiquitin/relaxin fusion protein [synthetic construct]
Length = 114
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392874444|gb|AFM86054.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|226484025|emb|CAX79681.1| ubiquitin C [Schistosoma japonicum]
Length = 229
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G+ P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGT---PPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>gi|427781391|gb|JAA56147.1| Putative ubiquitin/40s ribosomal protein s27a fusion
[Rhipicephalus pulchellus]
Length = 124
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392883082|gb|AFM90373.1| ubiquitin-40S ribosomal protein S27a-like protein [Callorhinchus
milii]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLAGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|399108300|gb|AFP20579.1| ubiquitin-like protein, partial [Trypoxylus dichotomus]
Length = 89
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|334323113|ref|XP_003340346.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Monodelphis
domestica]
Length = 77
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|281413215|gb|ADA69136.1| ubiquitin [Chilo suppressalis]
Length = 76
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIMLT 76
+ + + S + ++L+
Sbjct: 58 DYDIQKESTLHLVLS 72
>gi|90076064|dbj|BAE87712.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +E +P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEAEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 5 FVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGK 52
+VKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK
Sbjct: 157 YVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGK 201
>gi|443720203|gb|ELU10002.1| hypothetical protein CAPTEDRAFT_103555 [Capitella teleta]
Length = 179
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+++++TL GT+F++ V P +T+ DVK +I+ ++G P QQ LI++ L+DD +L
Sbjct: 1 MELYIETLTGTAFELRVSPYETIQDVKARIQKLEGI---PMCQQHLIWRSIELEDDYSLR 57
Query: 62 ENKVAENSFVVIMLTKNKRP 81
+ + + + + ++LT P
Sbjct: 58 DYSIHDGASLKLVLTMRGGP 77
>gi|385843206|gb|AFI80900.1| ubiquitin/ribosomal protein S27 precursor [Crassostrea gigas]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|221122833|ref|XP_002155023.1| PREDICTED: polyubiquitin-C, partial [Hydra magnipapillata]
Length = 530
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTL G + +EV+P DT+ +VK KI+ +G + QQ LI+ GK L+DD TL
Sbjct: 149 MKIFVKTLTGKTITLEVEPADTIENVKAKIQDKEG---FLPDQQRLIFAGKELEDDRTLS 205
Query: 62 ENKVAENSFVVIML 75
V + S + ++L
Sbjct: 206 YYNVQKESTLHLVL 219
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +F +EV+P +T+ +VK KI +G P QQ LI+ G +L +D TL
Sbjct: 225 MQIFVKTLTGKTFTLEVEPANTIDEVKAKICDKEG---VPPDQQRLIFHG-ILLEDATLS 280
Query: 62 ENKVAENSFVVIML 75
+ V + S + ++L
Sbjct: 281 DCNVQKKSVLQLVL 294
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK +I+ +G + QQ LI+ GK L+DD TL
Sbjct: 300 MQIFVKTLTGKTITLEVELADTIENVKARIQDKKG---FLPDQQRLIFAGKELEDDRTLS 356
Query: 62 ENKVAENSFVVIML 75
V + S + ++L
Sbjct: 357 YYNVQKESTLHLVL 370
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M IFVKTL G + +EV+P DT+ +VK KI +G P QQ L + GK L+++ TL
Sbjct: 376 MNIFVKTLTGKTITLEVEPADTIDNVKAKIHDKEG---VPLDQQSLFFAGKELENERTLS 432
Query: 62 ENKV 65
+ +
Sbjct: 433 DYNI 436
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEE 62
+I +KTL +EV+ +T+ DVK I+ +G P QQ L + G +LKD+ TL +
Sbjct: 74 QIHIKTLTSKIISLEVERINTIEDVKENIKVREG---VPPDQQRLFFAGNILKDERTLSD 130
Query: 63 NKVAENSFV 71
+ + S +
Sbjct: 131 YNILKESIL 139
>gi|260806905|ref|XP_002598324.1| hypothetical protein BRAFLDRAFT_113894 [Branchiostoma floridae]
gi|229283596|gb|EEN54336.1| hypothetical protein BRAFLDRAFT_113894 [Branchiostoma floridae]
Length = 600
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPT 93
+ + + S + ++ K TG+ T P+
Sbjct: 438 DYNIQKESTLHLIFVKT--LTGKTITLEVEPS 467
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 524 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 580
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 581 DYNIQKESTLHLVL 594
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL +
Sbjct: 450 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDY 506
Query: 64 KVAENSFVVIML 75
+ + S + ++L
Sbjct: 507 NIQKESTLHLVL 518
>gi|149287148|gb|ABR23473.1| ubiquitin/40S ribosomal protein S27a [Ornithodoros parkeri]
Length = 156
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|123390686|ref|XP_001299928.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880877|gb|EAX86998.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 186
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 110 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 166
Query: 62 ENKVAENSFVVIML 75
+ + ++S + ++L
Sbjct: 167 DYSIQKDSTLHLVL 180
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 6 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKV 65
VKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL++ +
Sbjct: 38 VKTLTGKHITLEVEPTDRIEDVKTKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQDYSI 94
Query: 66 AENSFVVIML 75
++S + ++L
Sbjct: 95 QKDSTLHLVL 104
>gi|327262731|ref|XP_003216177.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Anolis
carolinensis]
Length = 156
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|600539|gb|AAA57047.1| ubiquitin, partial [synthetic construct]
Length = 157
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|387916118|gb|AFK11668.1| polyubiquitin-like protein [Callorhinchus milii]
Length = 381
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPLDQQCLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFVGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>gi|123390682|ref|XP_001299927.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880876|gb|EAX86997.1| polyubiquitin [Trichomonas vaginalis G3]
Length = 153
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 62 ENKVAENSFVVIMLTKN-------KRPTGEGSTRSTAPT 93
+ + ++S + ++L K TG+ T PT
Sbjct: 58 DYSIQKDSTLHLVLRLRGGMQIFVKTLTGKHITLEVEPT 96
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G +EV+P D + DVK KI+ +G P QQ LI+ GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 62 ENKVAENSFVVIML 75
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|389608447|dbj|BAM17833.1| ribosomal protein L40 [Papilio xuthus]
gi|389611125|dbj|BAM19173.1| ribosomal protein L40 [Papilio polytes]
Length = 129
Score = 55.1 bits (131), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|197129059|gb|ACH45557.1| putative ubiquitin C variant 4 [Taeniopygia guttata]
Length = 190
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
>gi|350537977|ref|NP_001232075.1| putative ubiquitin C variant 2 [Taeniopygia guttata]
gi|197129056|gb|ACH45554.1| putative ubiquitin C variant 2 [Taeniopygia guttata]
Length = 248
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>gi|372467011|pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab
Bound To Linear Ubiquitin
gi|372467014|pdb|3U30|D Chain D, Crystal Structure Of A Linear-Specific Ubiquitin Fab
Bound To Linear Ubiquitin
Length = 172
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 77
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 78 DYNIQKESTLHLVL 91
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 153
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 154 DYNIQKESTLHLVL 167
>gi|346469917|gb|AEO34803.1| hypothetical protein [Amblyomma maculatum]
Length = 156
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|92790170|emb|CAI83754.1| Polyubiqutin 1 [Polyplastron multivesiculatum]
Length = 379
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 75 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 131
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 132 DYNIQKESTLHLVL 145
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 151 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 207
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 208 DYNIQKESTLHLVL 221
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 227 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 283
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 284 DYNIQKESTLHLVL 297
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL
Sbjct: 303 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 359
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 360 DYNIQKESTLHLVL 373
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D+ TL +
Sbjct: 1 IFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLADY 57
Query: 64 KVAENSFVVIML 75
+ + S + ++L
Sbjct: 58 NIQKESTLHLVL 69
>gi|109157814|pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
gi|109157815|pdb|2GBR|B Chain B, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
gi|109157816|pdb|2GBR|C Chain C, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
Length = 81
Score = 54.7 bits (130), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQG--SDVYPAAQQMLIYQGKVLKDDTT 59
M+IFVKTL G + +EV+P DT+ +VK KI+ +G + P QQ LI+ GK L+D T
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 60 LEENKVAENSFVVIML 75
L + + + S + ++L
Sbjct: 61 LSDYNIQKESTLHLVL 76
>gi|15213800|gb|AAK92175.1|AF400203_1 ribosomal protein L40 [Spodoptera frugiperda]
gi|302403431|gb|ADL38964.1| ubiquitin-53 aa extension protein [Spodoptera exigua]
gi|357618970|gb|EHJ71754.1| ribosomal protein L40 [Danaus plexippus]
Length = 129
Score = 54.7 bits (130), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|318086966|gb|ADV40075.1| 60S ribosomal protein L40A [Latrodectus hesperus]
Length = 156
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|296199681|ref|XP_002747252.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
Length = 156
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|260766535|gb|ACX50289.1| ubiquitin [Scylla paramamosain]
Length = 154
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|388856731|emb|CCF49691.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Ustilago hordei]
Length = 424
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 284 NPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVT 343
NP LQP++Q + + NPQL + L L+ GG G + +P +++
Sbjct: 323 NPAALQPLVQAIAQSNPQLAEAMNHDPQGVLSLLAGGAAGGAGEEME-----LPTLAELS 377
Query: 344 PEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
++R ++E++ AMG A +E +F C KN E+A Y ++ +FED
Sbjct: 378 EQDRTSVEQIVAMGIPEAKAIESYFMCGKNVEMAVQYYFENPQDFED 424
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,429,537,730
Number of Sequences: 23463169
Number of extensions: 307327305
Number of successful extensions: 3395364
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5740
Number of HSP's successfully gapped in prelim test: 17758
Number of HSP's that attempted gapping in prelim test: 3016403
Number of HSP's gapped (non-prelim): 266598
length of query: 390
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 246
effective length of database: 8,980,499,031
effective search space: 2209202761626
effective search space used: 2209202761626
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 78 (34.7 bits)