BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016387
(390 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84L31|RD23C_ARATH Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana
GN=RAD23-3 PE=2 SV=2
Length = 419
Score = 515 bits (1327), Expect = e-145, Method: Compositional matrix adjust.
Identities = 280/425 (65%), Positives = 319/425 (75%), Gaps = 42/425 (9%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPIS--- 118
ENKVAENSF+VIM+ K+K + S+ S ++A S P + P+ +PQT +S
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQA--KSIPPSTSQPSISPQTPASVSAPV 118
Query: 119 -----------------------TEPTPAPTPAPASASVS-----SVSATSESGVYGHAA 150
T TP P P PA+ S S S S+ VYG AA
Sbjct: 119 APAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAA 178
Query: 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV 210
SNL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PV
Sbjct: 179 SNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPV 238
Query: 211 ARAPGN-GQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
AR P + GQ AN P Q QPA +SGPNANPLDLFPQGLP+VG G GAG+LDFLR
Sbjct: 239 ARPPASAGQPANPPAQT---QQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLR 294
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG--EGN 327
NS QFQ LRAMVQANPQ+LQPMLQELGKQNP L+RLIQ+HQADFLRLINEPV+GG GN
Sbjct: 295 NSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGN 354
Query: 328 LGDQLAGLM--PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385
L Q+A M PQ+IQVT EEREAIERLEAMGF+RA+VLEVFFACNKNEELAANYLLDHM
Sbjct: 355 LLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHM 414
Query: 386 HEFED 390
HEFE+
Sbjct: 415 HEFEE 419
>sp|Q84L30|RD23D_ARATH Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana
GN=RAD23-4 PE=2 SV=2
Length = 378
Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust.
Identities = 265/391 (67%), Positives = 308/391 (78%), Gaps = 16/391 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKIFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 62 ENKVAENSFVVIMLTKNK-RPTGEGSTRSTAPTKAPQSSAPTPAATP-ATAPQTAVPIST 119
EN V ENSF+VIML+K K P+G STA AP ++ P ATP +AP +VP+
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSG----ASTASAPAPSATQPQTVATPQVSAPTASVPV-- 113
Query: 120 EPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
PT A+A+ + +A+ ++ VYG AASNLVAG LE +QQILDMGGG+WDRDTV
Sbjct: 114 -----PTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTV 168
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
VRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A +P PQ + G
Sbjct: 169 VRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGG 228
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
PNANPL+LFPQG+P AGAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQN
Sbjct: 229 PNANPLNLFPQGMPAA-DAGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQN 287
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFD 359
PQLVRLIQEHQADFLRLINEPV+ GE N+ +QL MPQ++ VTPEEREAIERLE MGFD
Sbjct: 288 PQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFD 346
Query: 360 RAIVLEVFFACNKNEELAANYLLDHMHEFED 390
RA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 347 RAMVLEVFFACNKNEELAANYLLDHMHEFED 377
>sp|Q40742|RAD23_ORYSJ Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica
GN=RAD23 PE=1 SV=2
Length = 392
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 248/401 (61%), Positives = 300/401 (74%), Gaps = 25/401 (6%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MKI VKTLKG++F +EV V DVK IET QG +YPA QQMLI+QGKVLKDDTTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRST-APTKAPQSSAP-------TPAATPATAPQT 113
ENKV ENSF+VIML + G+GS+ S A +KAP + AP PA+ AP T
Sbjct: 61 ENKVLENSFLVIMLRQ-----GKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPAT 115
Query: 114 AVPIS-TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGG 172
VP++ + PTP T +PA A V+ +SE+ YG A SNLVAG+NLE IQ IL+MGGG
Sbjct: 116 TVPVTVSAPTPTATASPAPA----VAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGG 171
Query: 173 TWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQP 232
WDRD V+ AL AA+NNPERAVEYLYSG+PEQ ++ PV P + Q AN PTQ Q TQP
Sbjct: 172 IWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PV--PPPSIQPAN-PTQASQATQP 227
Query: 233 A--PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQP 290
A + SSGPNA+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+LQP
Sbjct: 228 AAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQP 287
Query: 291 MLQELGKQNPQLVRLIQEHQADFLRLINEPVQG-GEGNLGDQLAGLMPQSIQVTPEEREA 349
+LQELGKQNPQ+++LIQE+QA+FL LINEP +G E NL DQ MPQ+I VTPEE EA
Sbjct: 288 LLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEA 347
Query: 350 IERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
I RLEAMGFDRA+VL+VFFACNK+E+LAANYLLDHM+EF+D
Sbjct: 348 ILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388
>sp|Q84L33|RD23A_ARATH Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana
GN=RAD23-1 PE=2 SV=3
Length = 371
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/395 (54%), Positives = 278/395 (70%), Gaps = 30/395 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K G + A + S P A T +T P A P +T+
Sbjct: 61 ENKVTEEGFLVVMLSKSKS----GGSAGQASVQTSSVSQPVSATTSSTKP--AAPSTTQS 114
Query: 122 TPAP-TPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
+P P +P PA ++ + T YG AAS LV+G++LE +QQI++MGGG+WD++TV
Sbjct: 115 SPVPASPIPAQEQPAAQTDT-----YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVT 169
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSPTQMPQPTQPAPVTS 237
RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A P PA S
Sbjct: 170 RALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------PVAPA---S 217
Query: 238 SGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGK 297
GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+LQPMLQELGK
Sbjct: 218 GGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGK 276
Query: 298 QNPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEA 355
QNPQL+RLIQE+QA+FL+L+NEP +G GEG++ DQ MP +I VTP E+EAI+RLEA
Sbjct: 277 QNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEA 336
Query: 356 MGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
MGFDRA+V+E F AC++NEELAANYLL++ +FED
Sbjct: 337 MGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
>sp|Q84L32|RD23B_ARATH Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana
GN=RAD23-2 PE=2 SV=2
Length = 368
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/393 (52%), Positives = 268/393 (68%), Gaps = 29/393 (7%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ VKTLKG+ F++ V P DT+ VK IE Q D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEP 121
ENKV E F+V+ML+K+K + G + + + + + T A P+T AVP S
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNST 120
Query: 122 TPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVR 181
P T++S YG AAS LV+G+++E +QQI++MGGG+WD++TV R
Sbjct: 121 PVQEQP------------TAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTR 168
Query: 182 ALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPN 241
ALRAAYNNPERAV+YLYSGIPE + P G G + T P P S GPN
Sbjct: 169 ALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGR-------ELTAPPP--SGGPN 218
Query: 242 ANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
++PLDLFPQ + S AAG G+L+FLR + QFQ LR+MV +NPQ+LQPMLQELGKQN
Sbjct: 219 SSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQN 275
Query: 300 PQLVRLIQEHQADFLRLINEPVQGGEGNLG--DQLAGLMPQSIQVTPEEREAIERLEAMG 357
PQL+RLIQE+QA+FL+L+NEP +G +G++ DQ MP S+ VTPEE+E+IERLEAMG
Sbjct: 276 PQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMG 335
Query: 358 FDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
FDRAIV+E F +C++NEELAANYLL+H +FED
Sbjct: 336 FDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368
>sp|P54727|RD23B_HUMAN UV excision repair protein RAD23 homolog B OS=Homo sapiens
GN=RAD23B PE=1 SV=1
Length = 409
Score = 252 bits (644), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 162/425 (38%), Positives = 241/425 (56%), Gaps = 63/425 (14%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPT--GEGSTRSTAP-----------TKAPQSSAPTPAATPA 108
E K+ E +FVV+M+TK K + +T+ +AP T Q+ P PA P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 109 TAPQTAVP----ISTEPTPA-------PTPAPA--------SASVSSVSATSESGVYGHA 149
+ P + P S+EP PA P PA +A+ S+ +S S ++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
V P QAA+ T PQ + A ++ + ++G L+FLR
Sbjct: 238 VVDPP---QAAS--TGAPQSSAVAAAAATTTAT------------TTTTSSGGHPLEFLR 280
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG----- 324
N PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 281 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 340
Query: 325 -----EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAAN 379
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 341 GGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 399
Query: 380 YLLDH 384
+LL
Sbjct: 400 FLLQQ 404
>sp|P54728|RD23B_MOUSE UV excision repair protein RAD23 homolog B OS=Mus musculus
GN=Rad23b PE=1 SV=2
Length = 416
Score = 247 bits (631), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 156/438 (35%), Positives = 230/438 (52%), Gaps = 82/438 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPA----------------- 104
E K+ E +FVV+M+TK K T + P SS P+P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVT------TAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPT 114
Query: 105 ------ATPATAPQTAVPISTEPTPA-------PTPAPASASV--------SSVSATSES 143
+TPA+ + S+EP PA P PA V S+ +S S
Sbjct: 115 PALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 144 GVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 204 QAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAG 263
E Q V P P V++ P + + + +G
Sbjct: 232 DRESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGH 274
Query: 264 SLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 334
Query: 324 G-----------------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEV 366
G + + +G M IQVTP+E+EAIERL+A+GF +V++
Sbjct: 335 AGSQGGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQA 393
Query: 367 FFACNKNEELAANYLLDH 384
+FAC KNE LAAN+LL
Sbjct: 394 YFACEKNENLAANFLLQQ 411
>sp|Q4KMA2|RD23B_RAT UV excision repair protein RAD23 homolog B OS=Rattus norvegicus
GN=Rad23b PE=1 SV=1
Length = 415
Score = 241 bits (616), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 154/434 (35%), Positives = 226/434 (52%), Gaps = 79/434 (18%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M++ +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNKRPTG-------------------------------------E 84
E K+ E +FVV+M+TK K T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPT 120
Query: 85 GSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESG 144
+ ST P SS P P T AT P+ + +PAPA S+ +S S
Sbjct: 121 STPASTTPASTTASSEPAP--TGATQPEKPAEKPAQTPVLTSPAPAD---STPGDSSRSN 175
Query: 145 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204
++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP
Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD 232
Query: 205 AEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGS 264
E Q V P P V++ P + + + +G
Sbjct: 233 RESQAVVDPP-----------------PQAVSTGTPQSPAVAAAAATTTATTTTTSGGHP 275
Query: 265 LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG 324
L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ
Sbjct: 276 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEA 335
Query: 325 ----------------EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFF 368
G + + +G M IQVTP+E+EAIERL+A+GF +V++ +F
Sbjct: 336 GGQGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYF 394
Query: 369 ACNKNEELAANYLL 382
AC KNE LAAN+LL
Sbjct: 395 ACEKNENLAANFLL 408
>sp|Q29RK4|RD23B_BOVIN UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B
PE=2 SV=1
Length = 408
Score = 236 bits (601), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 153/424 (36%), Positives = 229/424 (54%), Gaps = 66/424 (15%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 62 ENKVAENSFVVIMLTKNK-----RPTGEGSTRSTAPTKAPQSS----------------- 99
E K+ E +FVV+M+TK K P + S A T S+
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPAPASAPT 120
Query: 100 --------APTPAAT---PATAPQTAVPISTEPTPAPTPAPASASVSSVSATSESGVYGH 148
APT A++ PA+A + P + P P +++ S+ +S S ++
Sbjct: 121 PTPVSVTPAPTTASSEPAPASAAKQEKP-AERPVETPVATTPTSTDSTSGDSSRSNLFED 179
Query: 149 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ 208
A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 236
Query: 209 PVARAPGNGQAANSPTQMPQPTQPAPVTSSG-PNANPLDLFPQGLPDVGSGAAGAGSLDF 267
V P P S+G P ++ + ++G L+F
Sbjct: 237 AV-------------------VDPPPAASTGAPQSSVAAAAATTTATTTTTSSGGHPLEF 277
Query: 268 LRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGN 327
LRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ G
Sbjct: 278 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 337
Query: 328 LGDQLAGLMPQS---------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAA 378
G G + IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAA
Sbjct: 338 GGGGGGGSGGIAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAA 397
Query: 379 NYLL 382
N+LL
Sbjct: 398 NFLL 401
>sp|P54725|RD23A_HUMAN UV excision repair protein RAD23 homolog A OS=Homo sapiens
GN=RAD23A PE=1 SV=1
Length = 363
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 155/404 (38%), Positives = 223/404 (55%), Gaps = 63/404 (15%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSS-----APTPAAT---PATAPQTAV 115
++ E +FVV+M+TK K G + +PT AP+SS APT + PA +
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 124
Query: 116 PISTEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWD 175
+ PT +P S S S E AAS LV G+ E + +I+ MG ++
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREED-----AASTLVTGSEYETMLTEIMSMG---YE 176
Query: 176 RDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPV 235
R+ VV ALRA+YNNP RAVEYL +GIP E P +G S QPA
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQPA-- 223
Query: 236 TSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQEL 295
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+L
Sbjct: 224 ---------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQL 262
Query: 296 GKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEE 346
G++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E
Sbjct: 263 GQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQE 320
Query: 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 321 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>sp|P54726|RD23A_MOUSE UV excision repair protein RAD23 homolog A OS=Mus musculus
GN=Rad23a PE=1 SV=2
Length = 363
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 156/405 (38%), Positives = 224/405 (55%), Gaps = 65/405 (16%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTEPTP 123
+ E +FVV+M+TK K G + +PT P+ S P P P A + P PT
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFP---PVLASGMSHP---PPTS 118
Query: 124 APTPAPASASVSSVSATSESGVYG---------HAASNLVAGNNLEGAIQQILDMGGGTW 174
+P+ S ++ S S SG AAS LV G+ E + +I+ MG +
Sbjct: 119 REDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 175 DRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAP 234
+R+ VV ALRA+YNNP RAVEYL +GIP E P +G S P QPA
Sbjct: 176 ERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQA----PEQPA- 223
Query: 235 VTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
+ AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+
Sbjct: 224 ----------------------TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQ 261
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPE 345
LG++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+
Sbjct: 262 LGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQ 319
Query: 346 EREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 320 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>sp|A3KMV2|RD23A_BOVIN UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A
PE=2 SV=1
Length = 362
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 224/400 (56%), Gaps = 56/400 (14%)
Query: 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEEN 63
I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 64 KVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE-PT 122
++ E +FVV+M+TK K G +PT P+SS P+A PA+ P + E +
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFPSA-PASGMSHPPPTAREDKS 123
Query: 123 PAPTPAPASASVSSVSATSESGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTV 179
P+ AP ++ S + SG G AAS LV G+ E + +I+ MG ++R+ V
Sbjct: 124 PSEESAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEIMSMG---YERERV 180
Query: 180 VRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSG 239
V ALRA+YNNP RAVEYL +GIP E P +G S QP
Sbjct: 181 VAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQVS----EQP------- 222
Query: 240 PNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQN 299
S AG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++N
Sbjct: 223 -----------------STEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQEN 265
Query: 300 PQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAI 350
PQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+EAI
Sbjct: 266 PQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAI 323
Query: 351 ERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
ERL+A+GF ++V++ +FAC KNE LAAN+LL F+D
Sbjct: 324 ERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>sp|O74803|RHP23_SCHPO UV excision repair protein rhp23 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rhp23 PE=1 SV=1
Length = 368
Score = 198 bits (504), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 213/396 (53%), Gaps = 37/396 (9%)
Query: 2 MKIFVKTLKGTSFDV-EVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M + K L+ F + +V + + ++K KI+T Q Y +Q LIY G++L DD T+
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQN---YEVERQKLIYSGRILADDKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPATAPQTAVPISTE 120
E + E F+V M++ RP ST +A + AP A P AP + V ST
Sbjct: 58 GEYNIKEQDFIVCMVS---RPKTSTSTPKSAASPAPNPPASVPEKK-VEAPSSTVAESTS 113
Query: 121 PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV 180
T T A A+ S +ATSE+ + A+ L G A++ +++MG ++R V
Sbjct: 114 TTQ--TVAAAAPSNPDTTATSEAPI---DANTLAVGAQRNVAVENMVEMG---YERSEVE 165
Query: 181 RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP 240
RA+RAA+NNP+RAVEYL +GIPE + + A ++ PT S+G
Sbjct: 166 RAMRAAFNNPDRAVEYLLTGIPEDILNRQREESAAALAAQQQQSEALAPT------STG- 218
Query: 241 NANPLDLFPQGLPDVG------SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQE 294
P +LF Q S G L FLR+ PQFQ LR +VQ NPQ+L+ +LQ+
Sbjct: 219 --QPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQ 276
Query: 295 LGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLE 354
+G+ +P L + I ++ FL+L+ E G EG G+ IQ+T EE E+I+RL
Sbjct: 277 IGQGDPALAQAITQNPEAFLQLLAE---GAEGESALPSGGIQ---IQITQEESESIDRLC 330
Query: 355 AMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 390
+GFDR IV++ + AC+KNEELAANYL +H HE ED
Sbjct: 331 QLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366
>sp|P32628|RAD23_YEAST UV excision repair protein RAD23 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RAD23 PE=1 SV=1
Length = 398
Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 131/423 (30%), Positives = 194/423 (45%), Gaps = 66/423 (15%)
Query: 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL 60
M+ + K K ++++P +T+ + K K+ S +Q LIY GKVL+D T+
Sbjct: 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTV 57
Query: 61 EENKVAENSFVVIMLTKNKRPTGEGSTRSTAPTKAPQSSAPTPAATPAT--APQTAVPIS 118
E + + VV M+++ K T+ T P AP+S A TP +T +P T +
Sbjct: 58 SECGLKDGDQVVFMVSQKKST----KTKVTEPPIAPES-ATTPGRENSTEASPSTDASAA 112
Query: 119 TEPTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDT 178
T P ++ T + G V G I++I++MG + R+
Sbjct: 113 PAATAPEGSQPQEEQTATTERTESASTPG-----FVVGTERNETIERIMEMG---YQREE 164
Query: 179 VVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSS 238
V RALRAA+NNP+RAVEYL GIPE QP + A T QPA
Sbjct: 165 VERALRAAFNNPDRAVEYLLMGIPENLR-QPEPQQQTAAAAEQPSTAATTAEQPAED--- 220
Query: 239 GPNANPLDLFPQGLP--DVGSGAAG--AGSLDFLRNSPQFQV---------LRAMVQANP 285
DLF Q + SGA G G+ D + P + LR +V NP
Sbjct: 221 -------DLFAQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNP 273
Query: 286 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--------QGGEGNL--------G 329
+ L P+L+ + + PQL I + F+ ++ E V +G + + G
Sbjct: 274 EALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTG 333
Query: 330 DQLAGLMPQ-----SIQV--TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382
+ A + Q S QV TPE+ +AI RL +GF+R +V++V+FAC+KNEE AAN L
Sbjct: 334 EAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILF 393
Query: 383 -DH 384
DH
Sbjct: 394 SDH 396
>sp|Q54LV1|RAD23_DICDI UV excision repair protein RAD23 homolog OS=Dictyostelium
discoideum GN=rcbA PE=1 SV=1
Length = 342
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 114/235 (48%), Gaps = 52/235 (22%)
Query: 150 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQP 209
+S+ G LE I+ I DMG + RD V+RALR +NN ERA+EYL SG
Sbjct: 154 SSDFATGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVSG--------- 201
Query: 210 VARAPGNGQAANSPTQMPQPTQPAPVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 269
N AAN P + NP + LR
Sbjct: 202 ------NIPAANDPEDEEEMEGGGGSGD-----NPFEA--------------------LR 230
Query: 270 NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG 329
N P F +LR + NP ++ +LQ+L + NP LVR IQE+ +F+RL G
Sbjct: 231 NHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLFQGDGNPG----- 285
Query: 330 DQLAGLMPQSIQVTPEEREAIERLEAM-GFDRAIVLEVFFACNKNEELAANYLLD 383
++QVT EE EAI+RL+A+ G D++ V+E +FAC+KNEEL A+YL +
Sbjct: 286 ---GNPGQFTLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 337
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
MK+ +K + + EV + TV ++K I + Q LIY GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 62 ENKVAENSFVVIMLTK 77
+ ++ F+V+M+ K
Sbjct: 58 SYNITDSGFIVMMIKK 73
>sp|P18101|RL40_DROME Ubiquitin-60S ribosomal protein L40 OS=Drosophila melanogaster
GN=RpL40 PE=1 SV=2
Length = 128
Score = 57.8 bits (138), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P0C276|RL40_SHEEP Ubiquitin-60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=2
SV=2
Length = 128
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62986|RL40_RAT Ubiquitin-60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52
PE=1 SV=2
Length = 128
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P0C275|RL40_PONPY Ubiquitin-60S ribosomal protein L40 OS=Pongo pygmaeus GN=UBA52
PE=2 SV=2
Length = 128
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P63053|RL40_PIG Ubiquitin-60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=1
SV=2
Length = 128
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P68205|RL40_OPHHA Ubiquitin-60S ribosomal protein L40 OS=Ophiophagus hannah PE=2
SV=2
Length = 128
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62984|RL40_MOUSE Ubiquitin-60S ribosomal protein L40 OS=Mus musculus GN=Uba52 PE=1
SV=2
Length = 128
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P0C273|RL40_MACFA Ubiquitin-60S ribosomal protein L40 OS=Macaca fascicularis
GN=UBA52 PE=2 SV=2
Length = 128
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62987|RL40_HUMAN Ubiquitin-60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1
SV=2
Length = 128
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P63052|RL40_FELCA Ubiquitin-60S ribosomal protein L40 OS=Felis catus GN=UBA52 PE=2
SV=2
Length = 128
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P63050|RL40_CANFA Ubiquitin-60S ribosomal protein L40 OS=Canis familiaris GN=UBA52
PE=2 SV=2
Length = 128
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P63048|RL40_BOVIN Ubiquitin-60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=1
SV=2
Length = 128
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P69201|RL40_LEIMA Ubiquitin-60S ribosomal protein L40 OS=Leishmania major
GN=UB-EP52 PE=3 SV=2
Length = 128
Score = 55.8 bits (133), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L++ TL
Sbjct: 1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEEGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|Q05120|UBIL_NPVOP Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=V-UBI PE=3 SV=1
Length = 93
Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + VE +P DTV VK KI +G P QQ LIY GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEG---VPVDQQRLIYAGKQLEDAQTLA 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHMVL 71
>sp|P62976|UBIQP_CRIGR Polyubiquitin OS=Cricetulus griseus PE=2 SV=2
Length = 658
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ QG P QQ LI+ GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
>sp|P15357|RS27A_DROME Ubiquitin-40S ribosomal protein S27a OS=Drosophila melanogaster
GN=RpS27A PE=1 SV=2
Length = 156
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P69200|RL40_LEITA Ubiquitin-60S ribosomal protein L40 OS=Leishmania tarentolae
GN=UB-EP52 PE=3 SV=2
Length = 128
Score = 55.5 bits (132), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL GT+ +EV+P DT+ +VK KI+ +G P QQ LI+ K L++ TL
Sbjct: 1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFADKQLEEGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P49633|RL40_ACACA Ubiquitin-60S ribosomal protein L40 OS=Acanthamoeba castellanii
PE=2 SV=2
Length = 128
Score = 55.1 bits (131), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62979|RS27A_HUMAN Ubiquitin-40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A
PE=1 SV=2
Length = 156
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P79781|RS27A_CHICK Ubiquitin-40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A
PE=2 SV=3
Length = 156
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62978|RS27A_CAVPO Ubiquitin-40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A
PE=1 SV=2
Length = 156
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62992|RS27A_BOVIN Ubiquitin-40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=1
SV=2
Length = 156
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62982|RS27A_RAT Ubiquitin-40S ribosomal protein S27a OS=Rattus norvegicus
GN=Rps27a PE=1 SV=2
Length = 156
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62983|RS27A_MOUSE Ubiquitin-40S ribosomal protein S27a OS=Mus musculus GN=Rps27a
PE=1 SV=2
Length = 156
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P68200|RS27A_ICTPU Ubiquitin-40S ribosomal protein S27a OS=Ictalurus punctatus
GN=rps27a PE=2 SV=2
Length = 156
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P68203|RS27A_SPOFR Ubiquitin-40S ribosomal protein S27a OS=Spodoptera frugiperda
PE=2 SV=2
Length = 156
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62975|UBIQ_RABIT Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1
Length = 76
Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P68197|UBIQ_CERCA Ubiquitin OS=Ceratitis capitata PE=1 SV=1
Length = 76
Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|Q865C5|UBIQ_CAMDR Ubiquitin OS=Camelus dromedarius PE=3 SV=2
Length = 76
Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P46575|RL40_EIMBO Ubiquitin-60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=2
Length = 129
Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + ++V+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P14795|RL40_TRYCR Ubiquitin-60S ribosomal protein L40 OS=Trypanosoma cruzi GN=FUS1
PE=2 SV=2
Length = 128
Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+ DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62972|UBIQP_XENLA Polyubiquitin (Fragment) OS=Xenopus laevis PE=1 SV=2
Length = 167
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 16 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 72
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 73 DYNIQKESTLHLVL 86
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 92 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 148
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 149 DYNIQKESTLHLVL 162
>sp|P29504|RS27A_MANSE Ubiquitin-40S ribosomal protein S27a OS=Manduca sexta PE=2 SV=2
Length = 155
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P68202|RS27A_PLUXY Ubiquitin-40S ribosomal protein S27a OS=Plutella xylostella PE=2
SV=2
Length = 155
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P0CG60|UBB_PONPY Polyubiquitin-B OS=Pongo pygmaeus GN=UBB PE=3 SV=1
Length = 229
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLE 61
M+IFVKTL G + +EV+P DT+ +VK KI+ +G P QQ LI+ GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 62 ENKVAENSFVVIML 75
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,244,464
Number of Sequences: 539616
Number of extensions: 7094634
Number of successful extensions: 67617
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 1220
Number of HSP's that attempted gapping in prelim test: 47989
Number of HSP's gapped (non-prelim): 14088
length of query: 390
length of database: 191,569,459
effective HSP length: 119
effective length of query: 271
effective length of database: 127,355,155
effective search space: 34513247005
effective search space used: 34513247005
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)