Query 016387
Match_columns 390
No_of_seqs 327 out of 1521
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 12:44:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 5.5E-75 1.9E-79 580.3 30.8 347 1-389 7-368 (368)
2 2qsf_X RAD23, UV excision repa 100.0 1.5E-37 5.2E-42 277.4 10.7 127 261-387 21-171 (171)
3 3m62_B UV excision repair prot 99.8 3.2E-20 1.1E-24 154.2 8.0 78 1-81 1-78 (106)
4 1pve_A HHR23B, UV excision rep 99.8 6.5E-20 2.2E-24 140.9 4.8 62 262-323 3-64 (72)
5 2f4m_B UV excision repair prot 99.8 3.6E-19 1.2E-23 132.8 8.2 59 263-321 2-60 (61)
6 4dwf_A HLA-B-associated transc 99.8 1.5E-18 5.2E-23 139.1 9.8 76 1-80 5-80 (90)
7 3phx_B Ubiquitin-like protein 99.8 2.6E-18 9E-23 134.3 10.8 74 2-78 5-78 (79)
8 3plu_A Ubiquitin-like modifier 99.8 1.8E-18 6E-23 139.9 9.4 72 1-75 21-92 (93)
9 1uel_A HHR23B, UV excision rep 99.8 4.6E-18 1.6E-22 138.2 11.8 77 2-81 1-80 (95)
10 2lxa_A Ubiquitin-like protein 99.8 8.1E-19 2.8E-23 140.9 7.1 75 1-78 1-79 (87)
11 4fbj_B NEDD8; effector-HOST ta 99.8 2.7E-18 9.3E-23 137.6 9.5 78 2-82 1-78 (88)
12 2wyq_A HHR23A, UV excision rep 99.8 4.8E-18 1.6E-22 134.4 10.7 77 1-80 5-84 (85)
13 1wx7_A Ubiquilin 3; ubiquitin- 99.7 9.4E-18 3.2E-22 139.1 11.9 77 1-81 17-93 (106)
14 2kk8_A Uncharacterized protein 99.7 5.6E-18 1.9E-22 134.9 10.0 72 2-76 11-83 (84)
15 3v6c_B Ubiquitin; structural g 99.7 6E-18 2.1E-22 136.2 10.2 75 1-78 17-91 (91)
16 1uh6_A Ubiquitin-like 5; beta- 99.7 3.1E-18 1.1E-22 140.7 8.1 72 1-75 28-99 (100)
17 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 9.5E-18 3.3E-22 135.9 10.3 78 2-82 2-79 (96)
18 4a20_A Ubiquitin-like protein 99.7 5.8E-18 2E-22 138.9 8.9 74 2-78 20-97 (98)
19 1wy8_A NP95-like ring finger p 99.7 3.6E-17 1.2E-21 130.6 12.0 78 1-81 7-86 (89)
20 3dbh_I NEDD8; cell cycle, acti 99.7 1.5E-17 5.2E-22 132.2 9.5 76 1-79 12-87 (88)
21 4hcn_B Polyubiquitin, ubiquiti 99.7 1.7E-17 5.7E-22 135.6 9.6 76 1-79 22-97 (98)
22 1ttn_A DC-UBP, dendritic cell- 99.7 1.9E-17 6.7E-22 137.3 9.8 77 1-80 23-99 (106)
23 2faz_A Ubiquitin-like containi 99.7 2.8E-17 9.6E-22 128.0 10.0 74 1-77 2-77 (78)
24 1ndd_A NEDD8, protein (ubiquit 99.7 3E-17 1E-21 126.3 10.1 75 2-79 1-75 (76)
25 2dzi_A Ubiquitin-like protein 99.7 3E-17 1E-21 128.4 10.2 74 1-77 7-80 (81)
26 3mtn_B UBA80, ubcep1, ubiquiti 99.7 3.4E-17 1.2E-21 129.0 10.5 77 1-80 3-79 (85)
27 2hj8_A Interferon-induced 17 k 99.7 2.2E-17 7.5E-22 132.2 9.3 76 2-80 5-80 (88)
28 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 4.6E-17 1.6E-21 129.4 11.0 77 1-80 7-83 (87)
29 3n3k_B Ubiquitin; hydrolase, p 99.7 2E-17 6.8E-22 130.5 8.7 77 1-80 3-79 (85)
30 1wgd_A Homocysteine-responsive 99.7 3.5E-17 1.2E-21 132.3 9.8 78 1-81 7-90 (93)
31 4eew_A Large proline-rich prot 99.7 3.8E-17 1.3E-21 130.4 9.8 71 2-76 18-88 (88)
32 3a9j_A Ubiquitin; protein comp 99.7 5.3E-17 1.8E-21 125.0 10.2 75 2-79 1-75 (76)
33 2uyz_B Small ubiquitin-related 99.7 4E-17 1.4E-21 127.5 9.3 75 2-79 4-78 (79)
34 1v2y_A 3300001G02RIK protein; 99.7 3.4E-17 1.2E-21 135.8 8.6 77 1-80 7-99 (105)
35 1v5o_A 1700011N24RIK protein; 99.7 8.4E-17 2.9E-21 132.5 10.9 77 1-80 7-88 (102)
36 2kan_A Uncharacterized protein 99.7 1E-16 3.4E-21 130.3 11.0 75 2-80 16-91 (94)
37 1wia_A Hypothetical ubiquitin- 99.7 8.7E-17 3E-21 130.4 10.6 74 1-80 7-81 (95)
38 1sif_A Ubiquitin; hydrophobic 99.7 6.2E-17 2.1E-21 129.7 9.2 75 2-79 10-84 (88)
39 1wju_A NEDD8 ultimate buster-1 99.7 8E-17 2.8E-21 132.3 9.7 74 2-79 16-93 (100)
40 3vdz_A Ubiquitin-40S ribosomal 99.7 1.1E-16 3.9E-21 133.8 10.8 76 1-79 35-110 (111)
41 1wyw_B Ubiquitin-like protein 99.7 8.6E-17 2.9E-21 131.3 9.5 75 2-79 22-96 (97)
42 1wx8_A Riken cDNA 4931431F19; 99.7 5.3E-17 1.8E-21 131.8 8.1 76 1-80 17-92 (96)
43 1yqb_A Ubiquilin 3; structural 99.7 1.1E-16 3.8E-21 131.5 9.7 76 1-80 22-97 (100)
44 2bwf_A Ubiquitin-like protein 99.7 1.8E-16 6.3E-21 122.6 10.4 71 2-76 5-75 (77)
45 2klc_A Ubiquilin-1; ubiquitin- 99.7 2.2E-16 7.7E-21 129.9 11.0 75 1-79 25-99 (101)
46 1j8c_A Ubiquitin-like protein 99.7 1.9E-16 6.5E-21 135.3 10.9 77 1-81 32-108 (125)
47 1dv0_A DNA repair protein HHR2 99.7 8.8E-18 3E-22 119.5 1.8 47 343-389 1-47 (47)
48 1yx5_B Ubiquitin; proteasome, 99.7 2.5E-16 8.7E-21 128.3 10.3 76 2-80 1-76 (98)
49 1ify_A HHR23A, UV excision rep 99.7 5.5E-17 1.9E-21 116.5 5.2 49 152-203 1-49 (49)
50 1wgg_A Ubiquitin carboxyl-term 99.7 1.6E-16 5.6E-21 129.6 8.5 73 1-78 7-80 (96)
51 3b1l_X E3 ubiquitin-protein li 99.5 6.1E-18 2.1E-22 131.0 0.0 75 2-79 1-75 (76)
52 2l7r_A Ubiquitin-like protein 99.7 2.1E-16 7.1E-21 128.0 8.9 74 1-79 19-92 (93)
53 1wgh_A Ubiquitin-like 3, HCG-1 99.7 8.9E-16 3E-20 129.5 12.5 76 2-78 17-100 (116)
54 2ojr_A Ubiquitin; lanthide-bin 99.6 9E-16 3.1E-20 128.2 11.6 76 1-79 35-110 (111)
55 1wxv_A BAG-family molecular ch 99.6 9.1E-16 3.1E-20 123.6 10.7 74 1-78 7-86 (92)
56 3l0w_B Monoubiquitinated proli 99.6 8E-16 2.7E-20 138.0 11.1 77 2-81 1-77 (169)
57 2gow_A HCG-1 protein, ubiquiti 99.6 1.3E-15 4.4E-20 130.2 11.1 75 1-78 17-101 (125)
58 1x1m_A Ubiquitin-like protein 99.6 8.2E-16 2.8E-20 127.7 9.5 74 2-78 13-101 (107)
59 1se9_A Ubiquitin family; ubiqu 99.6 1.1E-15 3.9E-20 130.3 9.9 79 2-80 17-106 (126)
60 2kdb_A Homocysteine-responsive 99.6 6.5E-16 2.2E-20 126.9 7.9 71 2-74 24-99 (99)
61 3rt3_B Ubiquitin-like protein 99.6 1.6E-15 5.5E-20 133.7 10.7 76 2-80 82-157 (159)
62 1v5t_A 8430435I17RIK protein; 99.6 1.2E-15 4E-20 122.8 8.8 73 1-77 7-83 (90)
63 2fnj_B Transcription elongatio 99.6 8.1E-16 2.8E-20 129.8 7.9 72 2-76 1-80 (118)
64 2kdi_A Ubiquitin, vacuolar pro 99.6 2.3E-15 7.7E-20 126.6 10.4 76 2-80 10-85 (114)
65 1we6_A Splicing factor, putati 99.6 1.5E-15 5E-20 126.9 9.2 76 2-80 28-107 (111)
66 1v86_A DNA segment, CHR 7, way 99.6 9.7E-16 3.3E-20 124.7 7.8 72 1-77 17-88 (95)
67 3m63_B Ubiquitin domain-contai 99.6 3.6E-16 1.2E-20 128.7 5.1 72 2-77 29-100 (101)
68 4ajy_B Transcription elongatio 99.6 1E-15 3.5E-20 128.9 7.8 73 2-77 1-81 (118)
69 3u30_A Ubiquitin, linear DI-ub 99.6 2.7E-15 9.3E-20 134.2 11.1 75 1-78 20-94 (172)
70 3rt3_B Ubiquitin-like protein 99.6 2E-15 6.9E-20 133.1 9.7 73 2-77 3-77 (159)
71 3q3f_A Ribonuclease/ubiquitin 99.6 2.5E-15 8.5E-20 137.0 9.8 77 2-81 106-182 (189)
72 2kd0_A LRR repeats and ubiquit 99.6 3.9E-15 1.3E-19 118.6 9.3 70 4-76 14-83 (85)
73 2daf_A FLJ35834 protein; hypot 99.6 6.7E-15 2.3E-19 123.4 10.6 75 2-79 16-91 (118)
74 4dbg_A Ranbp-type and C3HC4-ty 99.6 8.6E-15 2.9E-19 121.2 10.2 73 2-77 25-100 (105)
75 3u5e_m 60S ribosomal protein L 99.6 2.4E-16 8.3E-21 135.0 0.0 76 2-80 1-76 (128)
76 2dzj_A Synaptic glycoprotein S 99.6 4.4E-15 1.5E-19 119.3 6.8 70 1-73 10-85 (88)
77 1we7_A SF3A1 protein; structur 99.6 1.9E-14 6.5E-19 120.9 10.8 77 2-81 26-112 (115)
78 3b08_A Polyubiquitin-C, ubiqui 99.5 2.3E-14 7.7E-19 124.5 11.0 75 2-79 77-151 (152)
79 3b08_A Polyubiquitin-C, ubiqui 99.5 2E-14 6.7E-19 124.9 10.4 73 2-77 1-73 (152)
80 3u30_A Ubiquitin, linear DI-ub 99.5 1.3E-14 4.3E-19 129.9 9.0 75 2-79 97-171 (172)
81 3u5c_f 40S ribosomal protein S 99.5 1.1E-15 3.8E-20 134.9 1.0 77 2-81 1-77 (152)
82 2dzm_A FAS-associated factor 1 99.5 4.6E-14 1.6E-18 116.0 7.5 72 2-77 9-82 (100)
83 3ai5_A Yeast enhanced green fl 99.5 7.8E-14 2.7E-18 135.7 10.2 75 1-78 233-307 (307)
84 2lbc_A Ubiquitin carboxyl-term 99.5 2.5E-13 8.5E-18 116.1 10.5 41 348-388 80-121 (126)
85 4b6w_A Tubulin-specific chaper 99.4 1.6E-13 5.5E-18 109.7 6.8 74 2-78 3-85 (86)
86 1wf9_A NPL4 family protein; be 99.4 2.5E-13 8.5E-18 112.8 7.9 71 2-76 8-94 (107)
87 2kjr_A CG11242; UBL, ubiquitin 99.4 6.3E-13 2.2E-17 108.2 10.1 70 2-74 16-93 (95)
88 2kj6_A Tubulin folding cofacto 99.4 1.3E-12 4.4E-17 106.8 9.3 72 2-76 15-95 (97)
89 1v6e_A Cytoskeleton-associated 99.4 1E-12 3.6E-17 106.5 8.6 73 2-77 8-88 (95)
90 2xzm_9 RPS31E; ribosome, trans 99.4 5.2E-14 1.8E-18 127.9 0.3 72 2-81 1-72 (189)
91 1vej_A Riken cDNA 4931431F19; 99.3 2.1E-12 7.2E-17 100.0 7.6 46 156-204 26-72 (74)
92 2kzr_A Ubiquitin thioesterase 99.3 1.4E-12 4.8E-17 103.8 6.3 71 2-76 1-77 (86)
93 2g3q_A Protein YBL047C; endocy 99.3 2E-12 6.8E-17 90.0 5.7 40 159-201 4-43 (43)
94 1vg5_A RSGI RUH-014, rhomboid 99.3 2.5E-12 8.4E-17 99.5 6.3 44 156-202 26-69 (73)
95 1t0y_A Tubulin folding cofacto 99.3 9E-12 3.1E-16 105.7 9.3 73 2-77 7-87 (122)
96 2bwb_A Ubiquitin-like protein 99.3 3.9E-12 1.3E-16 89.9 5.6 41 157-200 5-46 (46)
97 2io1_B Small ubiquitin-related 99.3 1.1E-11 3.9E-16 100.6 9.1 76 2-80 8-83 (94)
98 3shq_A UBLCP1; phosphatase, hy 99.3 4.1E-12 1.4E-16 124.7 7.5 72 2-77 6-80 (320)
99 2knz_A Ubiquilin-4; cytoplasm, 99.2 7.7E-12 2.6E-16 91.0 5.5 43 157-202 9-52 (53)
100 4ae4_A Ubiquitin-associated pr 99.2 6.2E-11 2.1E-15 100.0 11.2 41 345-385 75-115 (118)
101 1veg_A NEDD8 ultimate buster-1 99.2 1.1E-11 3.8E-16 97.9 6.0 44 159-205 29-75 (83)
102 1wm3_A Ubiquitin-like protein 99.2 5.3E-11 1.8E-15 91.7 9.7 71 2-75 2-72 (72)
103 2io0_B Small ubiquitin-related 99.2 6.7E-11 2.3E-15 95.4 10.0 76 2-80 6-81 (91)
104 2jy5_A Ubiquilin-1; UBA, alter 99.2 2.2E-11 7.4E-16 88.3 6.3 41 157-200 10-51 (52)
105 2g3q_A Protein YBL047C; endocy 99.2 2.3E-11 7.7E-16 84.6 5.4 38 347-384 5-42 (43)
106 1wji_A Tudor domain containing 99.2 2.4E-11 8E-16 91.5 5.8 42 159-203 9-50 (63)
107 3a4r_A Nfatc2-interacting prot 99.2 1.6E-10 5.4E-15 90.7 10.7 70 2-74 8-78 (79)
108 2dna_A Unnamed protein product 99.2 3.4E-11 1.2E-15 91.2 5.8 45 157-204 17-62 (67)
109 1wr1_B Ubiquitin-like protein 99.2 2.7E-11 9.3E-16 89.6 5.1 41 157-200 15-56 (58)
110 2d07_B Ubiquitin-like protein 99.1 1.5E-10 5E-15 93.7 9.6 74 2-78 18-91 (93)
111 1wz0_A Ubiquitin-like protein 99.1 1.6E-10 5.5E-15 95.5 9.4 76 2-80 25-100 (104)
112 2dak_A Ubiquitin carboxyl-term 99.1 4E-11 1.4E-15 90.3 4.3 42 159-203 9-50 (63)
113 2k8h_A Small ubiquitin protein 99.1 2.9E-10 1E-14 94.8 8.6 75 2-79 27-101 (110)
114 1wji_A Tudor domain containing 99.1 9.3E-11 3.2E-15 88.2 5.0 43 346-388 9-51 (63)
115 1wiv_A UBP14, ubiquitin-specif 99.1 1.4E-10 4.7E-15 89.8 5.7 41 159-202 29-69 (73)
116 2crn_A Ubash3A protein; compac 99.1 6.7E-11 2.3E-15 89.3 3.7 45 156-203 6-51 (64)
117 1z96_A DNA-damage, UBA-domain 99.1 1.4E-10 4.7E-15 79.1 4.9 39 157-198 2-40 (40)
118 2eke_C Ubiquitin-like protein 99.1 4.9E-10 1.7E-14 92.8 8.9 73 2-78 32-104 (106)
119 1wjn_A Tubulin-folding protein 99.0 5.1E-10 1.8E-14 90.8 8.2 74 1-77 9-93 (97)
120 2knz_A Ubiquilin-4; cytoplasm, 99.0 3.2E-10 1.1E-14 82.4 6.0 44 342-385 5-51 (53)
121 2dag_A Ubiquitin carboxyl-term 99.0 2.6E-10 9E-15 88.5 5.8 43 159-204 9-52 (74)
122 2cpw_A CBL-interacting protein 99.0 3.1E-10 1.1E-14 85.6 5.4 42 348-389 21-63 (64)
123 2cpw_A CBL-interacting protein 99.0 2E-10 7E-15 86.6 4.4 40 160-202 20-60 (64)
124 2bwb_A Ubiquitin-like protein 99.0 4.2E-10 1.4E-14 79.4 5.7 42 343-384 2-46 (46)
125 2ekk_A UBA domain from E3 ubiq 99.0 2.6E-10 8.9E-15 80.8 4.6 38 159-200 9-46 (47)
126 1wgn_A UBAP1, ubiquitin associ 99.0 3.8E-10 1.3E-14 83.1 5.3 48 340-387 13-60 (63)
127 1vg5_A RSGI RUH-014, rhomboid 99.0 2.9E-10 1E-14 87.8 4.9 48 340-387 23-70 (73)
128 1whc_A RSGI RUH-027, UBA/UBX 3 99.0 2.3E-10 8E-15 86.3 4.2 42 160-204 10-52 (64)
129 2jy5_A Ubiquilin-1; UBA, alter 99.0 3.5E-10 1.2E-14 81.9 4.8 43 343-385 7-52 (52)
130 1z96_A DNA-damage, UBA-domain 99.0 4.6E-10 1.6E-14 76.5 5.0 39 344-382 2-40 (40)
131 2dkl_A Trinucleotide repeat co 99.0 5.5E-10 1.9E-14 88.8 6.2 43 347-389 22-64 (85)
132 1ify_A HHR23A, UV excision rep 99.0 5.3E-10 1.8E-14 79.9 5.5 43 343-385 5-47 (49)
133 1whc_A RSGI RUH-027, UBA/UBX 3 99.0 5.8E-10 2E-14 84.2 5.4 42 348-389 11-53 (64)
134 1wgn_A UBAP1, ubiquitin associ 99.0 6.2E-10 2.1E-14 81.9 5.0 38 160-200 20-57 (63)
135 2dai_A Ubadc1, ubiquitin assoc 99.0 4.9E-10 1.7E-14 88.8 4.8 44 346-389 29-72 (83)
136 2dag_A Ubiquitin carboxyl-term 99.0 5.9E-10 2E-14 86.5 5.1 44 346-389 9-53 (74)
137 2dna_A Unnamed protein product 98.9 1.2E-09 4.3E-14 82.6 6.4 50 339-388 10-62 (67)
138 1wiv_A UBP14, ubiquitin-specif 98.9 8E-10 2.7E-14 85.5 4.9 45 344-388 27-71 (73)
139 2crn_A Ubash3A protein; compac 98.9 1.1E-09 3.8E-14 82.6 5.4 41 349-389 12-53 (64)
140 2ooa_A E3 ubiquitin-protein li 98.9 1.4E-09 4.8E-14 77.4 5.3 37 348-384 13-49 (52)
141 2dai_A Ubadc1, ubiquitin assoc 98.9 1.1E-09 3.7E-14 86.8 5.3 42 159-203 29-70 (83)
142 1vek_A UBP14, ubiquitin-specif 98.9 9.8E-10 3.3E-14 87.3 5.0 42 159-203 29-71 (84)
143 2dak_A Ubiquitin carboxyl-term 98.9 4.7E-10 1.6E-14 84.4 2.6 42 347-388 10-51 (63)
144 2dah_A Ubiquilin-3; UBA domain 98.9 1.8E-09 6.3E-14 78.6 5.4 41 158-201 8-49 (54)
145 1wr1_B Ubiquitin-like protein 98.9 2.3E-09 8E-14 79.2 5.3 45 341-385 10-57 (58)
146 2ekk_A UBA domain from E3 ubiq 98.9 1.5E-09 5E-14 76.9 3.9 38 347-385 10-47 (47)
147 2d9s_A CBL E3 ubiquitin protei 98.8 2.8E-09 9.5E-14 76.3 4.8 38 348-385 11-48 (53)
148 2cwb_A Chimera of immunoglobul 98.8 3.3E-09 1.1E-13 87.7 6.0 43 157-202 64-107 (108)
149 2lbc_A Ubiquitin carboxyl-term 98.8 3.7E-09 1.2E-13 90.1 5.7 41 159-202 78-118 (126)
150 1vek_A UBP14, ubiquitin-specif 98.8 4E-09 1.4E-13 83.7 5.0 44 346-389 29-73 (84)
151 1veg_A NEDD8 ultimate buster-1 98.8 5.7E-09 1.9E-13 82.4 5.7 41 347-387 30-70 (83)
152 2dah_A Ubiquilin-3; UBA domain 98.8 1E-08 3.5E-13 74.7 5.7 41 347-387 10-51 (54)
153 1vej_A Riken cDNA 4931431F19; 98.7 1.1E-08 3.8E-13 79.1 5.9 46 343-388 24-72 (74)
154 2dkl_A Trinucleotide repeat co 98.7 9.8E-09 3.3E-13 81.6 5.4 38 160-200 22-59 (85)
155 3kyd_D Small ubiquitin-related 98.7 6.5E-08 2.2E-12 81.1 10.1 73 2-77 41-113 (115)
156 1dv0_A DNA repair protein HHR2 98.7 3.7E-09 1.3E-13 74.8 1.6 41 158-201 3-43 (47)
157 2juj_A E3 ubiquitin-protein li 98.6 2.9E-08 1E-12 71.1 5.1 38 347-384 8-45 (56)
158 2ooa_A E3 ubiquitin-protein li 98.6 3.1E-08 1.1E-12 70.5 5.1 38 159-199 11-48 (52)
159 2d9s_A CBL E3 ubiquitin protei 98.6 5.5E-08 1.9E-12 69.6 5.3 38 159-199 9-46 (53)
160 2oo9_A E3 ubiquitin-protein li 98.5 7.9E-08 2.7E-12 66.4 4.9 38 348-385 6-43 (46)
161 2oo9_A E3 ubiquitin-protein li 98.5 1.1E-07 3.7E-12 65.7 5.3 41 156-199 1-41 (46)
162 2pjh_A Protein NPL4, nuclear p 98.5 4.7E-08 1.6E-12 76.8 4.1 69 2-74 5-78 (80)
163 2cp8_A NEXT to BRCA1 gene 1 pr 98.5 5.3E-08 1.8E-12 70.4 3.8 47 342-388 3-52 (54)
164 3pge_A SUMO-modified prolifera 98.5 5.5E-07 1.9E-11 82.4 10.0 76 2-81 30-105 (200)
165 4ae4_A Ubiquitin-associated pr 98.4 1.2E-07 4.3E-12 79.8 4.6 40 158-200 75-114 (118)
166 2cwb_A Chimera of immunoglobul 98.4 2.3E-07 7.9E-12 76.7 5.5 40 347-386 67-107 (108)
167 3tix_A Ubiquitin-like protein 98.4 4.4E-07 1.5E-11 82.0 7.4 75 2-80 58-132 (207)
168 2juj_A E3 ubiquitin-protein li 98.4 2.8E-07 9.5E-12 66.0 4.6 39 159-200 7-45 (56)
169 3k9o_A Ubiquitin-conjugating e 98.4 2.8E-07 9.5E-12 84.5 5.6 74 299-384 128-201 (201)
170 3k9o_A Ubiquitin-conjugating e 98.2 9.1E-07 3.1E-11 81.0 5.0 43 154-199 158-200 (201)
171 3goe_A DNA repair protein RAD6 98.2 1.1E-05 3.8E-10 62.5 9.7 71 2-75 10-81 (82)
172 3e46_A Ubiquitin-conjugating e 98.1 2.1E-06 7.1E-11 81.4 6.0 75 298-384 179-253 (253)
173 1wj7_A Hypothetical protein (R 98.1 3.3E-06 1.1E-10 69.0 5.9 44 157-203 37-81 (104)
174 1wj7_A Hypothetical protein (R 98.1 5.4E-06 1.8E-10 67.8 6.5 43 345-387 38-81 (104)
175 2jxx_A Nfatc2-interacting prot 98.1 2.3E-05 7.9E-10 63.6 9.8 70 2-74 26-96 (97)
176 3v7o_A Minor nucleoprotein VP3 98.1 5.2E-07 1.8E-11 82.6 0.0 75 2-80 22-96 (227)
177 2cp8_A NEXT to BRCA1 gene 1 pr 98.0 5.4E-06 1.8E-10 59.9 4.3 42 156-200 6-48 (54)
178 1oqy_A HHR23A, UV excision rep 97.9 3.8E-06 1.3E-10 83.7 3.8 44 345-388 167-210 (368)
179 2qsf_X RAD23, UV excision repa 97.8 1.1E-05 3.8E-10 71.8 4.5 41 157-200 128-168 (171)
180 4efo_A Serine/threonine-protei 97.8 7.4E-05 2.5E-09 60.2 8.2 70 4-76 15-88 (94)
181 2l76_A Nfatc2-interacting prot 97.8 0.00015 5.2E-09 58.3 10.0 72 2-77 22-93 (95)
182 2bps_A YUKD protein; ubiquitin 97.8 4.2E-05 1.4E-09 60.0 6.5 71 2-73 5-80 (81)
183 3uf8_A Ubiquitin-like protein 97.8 6.8E-05 2.3E-09 68.9 8.5 75 2-80 22-96 (209)
184 2cos_A Serine/threonine protei 97.6 9.1E-05 3.1E-09 53.1 5.1 38 158-198 8-46 (54)
185 2kc2_A Talin-1, F1; FERM, adhe 97.5 0.00017 5.8E-09 61.3 7.0 68 3-73 13-119 (128)
186 2al3_A TUG long isoform; TUG U 97.5 0.00036 1.2E-08 55.6 7.9 75 2-79 10-84 (90)
187 3ix6_A TS, tsase, thymidylate 97.5 1.5E-05 5.2E-10 78.8 0.0 74 2-79 22-95 (360)
188 3qx1_A FAS-associated factor 1 97.3 0.00087 3E-08 52.4 8.5 69 2-74 8-81 (84)
189 3ihp_A Ubiquitin carboxyl-term 97.3 0.00046 1.6E-08 75.7 9.3 40 348-387 722-761 (854)
190 3e46_A Ubiquitin-conjugating e 97.2 0.00025 8.6E-09 67.1 5.2 43 154-199 210-252 (253)
191 4da1_A Protein phosphatase 1K, 97.2 4.8E-05 1.7E-09 76.0 0.0 76 2-81 31-106 (389)
192 2dzk_A UBX domain-containing p 97.2 0.0035 1.2E-07 51.6 11.1 71 2-75 14-89 (109)
193 1wj4_A KIAA0794 protein; UBX d 96.7 0.0044 1.5E-07 52.2 7.7 70 2-75 44-118 (124)
194 2cr5_A Reproduction 8; UBX dom 96.6 0.017 5.7E-07 47.4 10.3 70 2-75 24-97 (109)
195 1wgl_A TOLL-interacting protei 96.5 0.0033 1.1E-07 46.2 5.0 41 348-388 11-53 (59)
196 2pwq_A Ubiquitin conjugating e 96.4 0.00064 2.2E-08 62.8 0.3 73 299-384 143-215 (216)
197 1s3s_G P47 protein; AAA ATPase 96.0 0.022 7.6E-07 48.0 8.1 67 2-70 53-122 (127)
198 2cos_A Serine/threonine protei 96.0 0.0052 1.8E-07 44.0 3.3 41 345-385 8-49 (54)
199 1wgl_A TOLL-interacting protei 95.9 0.0079 2.7E-07 44.2 4.2 40 158-200 8-49 (59)
200 2dhy_A CUE domain-containing p 95.8 0.012 4.1E-07 44.3 5.0 37 347-384 19-58 (67)
201 1otr_A Protein CUE2; protein-p 95.7 0.015 5.2E-07 41.0 4.7 39 159-200 4-44 (49)
202 2pwq_A Ubiquitin conjugating e 95.6 0.0019 6.5E-08 59.6 0.0 41 158-201 176-216 (216)
203 2daj_A KIAA0977 protein, COBL- 95.3 0.14 4.9E-06 40.1 9.4 71 2-78 11-84 (91)
204 2dhy_A CUE domain-containing p 95.2 0.036 1.2E-06 41.7 5.8 43 155-200 14-58 (67)
205 2di0_A Activating signal coint 95.0 0.059 2E-06 40.9 6.5 49 154-205 8-59 (71)
206 1tte_A Ubiquitin-conjugating e 94.9 0.019 6.7E-07 52.8 4.4 74 298-375 122-198 (215)
207 2dam_A ETEA protein; KIAA0887, 94.8 0.075 2.6E-06 39.8 6.4 46 340-385 12-59 (67)
208 1ryj_A Unknown; beta/alpha pro 94.6 0.24 8.4E-06 36.9 9.1 61 2-75 5-65 (70)
209 3ihp_A Ubiquitin carboxyl-term 94.5 0.028 9.5E-07 61.7 5.0 41 157-200 718-758 (854)
210 4e71_A Plexin-B2, MM1; transme 94.5 0.28 9.5E-06 40.4 9.8 64 11-75 23-109 (111)
211 2l32_A Small archaeal modifier 94.4 0.11 3.6E-06 39.7 6.6 60 2-74 1-60 (74)
212 2dal_A Protein KIAA0794; FAS a 94.2 0.11 3.8E-06 38.2 6.1 46 340-385 9-55 (62)
213 2cp9_A EF-TS, EF-TSMT, elongat 93.8 0.092 3.1E-06 39.1 5.1 36 160-198 10-46 (64)
214 1v92_A NSFL1 cofactor P47; 3-h 93.7 0.11 3.9E-06 35.4 5.1 40 346-385 5-45 (46)
215 2r2o_A Plexin-B1; effector dom 93.7 0.31 1.1E-05 41.5 8.8 65 12-77 41-129 (138)
216 4a3p_A Ubiquitin carboxyl-term 93.5 0.34 1.2E-05 44.2 9.6 62 14-78 142-210 (217)
217 3jyu_A Ubiquitin carboxyl-term 93.2 0.52 1.8E-05 43.5 10.4 62 14-78 154-222 (231)
218 1vjk_A Molybdopterin convertin 93.0 0.71 2.4E-05 36.6 9.6 68 2-74 10-92 (98)
219 1otr_A Protein CUE2; protein-p 92.8 0.14 4.7E-06 36.1 4.3 40 347-386 5-46 (49)
220 2cp9_A EF-TS, EF-TSMT, elongat 92.1 0.21 7.3E-06 37.1 4.8 35 350-384 13-48 (64)
221 3h6n_A Plexin-D1; structural g 91.2 1.4 4.6E-05 37.1 9.4 65 11-76 16-104 (127)
222 4fp9_B Mterf domain-containing 91.0 1.2 4.2E-05 43.4 10.5 93 276-385 94-195 (335)
223 3rpf_C Molybdopterin convertin 90.8 0.51 1.8E-05 35.4 6.0 65 2-74 1-68 (74)
224 3ivf_A Talin-1; FERM domain, c 90.7 0.81 2.8E-05 44.7 9.0 73 2-75 4-83 (371)
225 2qho_B E3 ubiquitin-protein li 90.6 0.47 1.6E-05 33.1 5.0 39 344-384 9-49 (53)
226 1p3q_Q VPS9P, vacuolar protein 90.4 0.11 3.9E-06 37.3 1.8 40 345-384 11-52 (54)
227 1oey_A P67-PHOX, neutrophil cy 90.1 2.1 7.3E-05 33.3 9.1 45 2-51 6-50 (83)
228 2llw_A Heat shock protein STI1 89.5 0.41 1.4E-05 36.2 4.4 38 265-307 22-59 (71)
229 4e74_A Plexin-A4; RBD, structu 89.5 1.5 5E-05 36.4 8.1 64 13-77 28-115 (117)
230 1q02_A Sequestosome 1; helical 89.4 0.33 1.1E-05 34.4 3.4 39 157-198 8-48 (52)
231 1wgk_A Riken cDNA 2900073H19 p 89.3 0.54 1.8E-05 38.8 5.4 69 2-75 12-103 (114)
232 4dbg_B Ring finger protein 31; 88.9 0.29 9.9E-06 42.6 3.6 39 158-198 101-139 (162)
233 2qjl_A URM1, ubiquitin-related 88.6 0.77 2.6E-05 36.4 5.8 36 1-36 1-46 (99)
234 3po0_A Small archaeal modifier 88.6 2.7 9.1E-05 32.3 8.8 56 12-74 18-83 (89)
235 1tyg_B YJBS; alpha beta barrel 88.2 0.75 2.6E-05 36.1 5.3 61 2-75 21-82 (87)
236 1ufz_A Hypothetical protein BA 87.9 1.1 3.6E-05 34.9 5.8 45 340-384 24-75 (83)
237 1ip9_A BEM1 protein; ubiquitin 86.8 1.7 5.8E-05 33.9 6.4 44 2-51 13-57 (85)
238 2l52_A Methanosarcina acetivor 86.7 1.9 6.6E-05 34.1 7.1 68 1-74 3-93 (99)
239 1q02_A Sequestosome 1; helical 86.7 1 3.4E-05 31.9 4.6 40 343-382 7-48 (52)
240 1pve_A HHR23B, UV excision rep 86.3 0.38 1.3E-05 36.6 2.5 39 266-309 20-61 (72)
241 2lnm_A Protein TIC 40, chlorop 85.6 0.83 2.8E-05 33.4 4.0 38 265-307 14-51 (62)
242 4dbg_B Ring finger protein 31; 85.4 0.89 3.1E-05 39.6 4.7 36 347-382 103-139 (162)
243 3dwg_C 9.5 kDa culture filtrat 84.7 2.6 8.7E-05 32.7 6.8 71 2-74 1-87 (93)
244 2di0_A Activating signal coint 84.6 2.2 7.7E-05 32.2 6.0 45 341-385 7-54 (71)
245 1ef1_A Moesin; membrane, FERM 84.2 5 0.00017 37.5 9.8 73 2-78 2-80 (294)
246 2juo_A GA-binding protein alph 84.0 2.7 9.3E-05 32.8 6.3 59 16-77 7-65 (89)
247 2dzl_A Protein FAM100B; UBA-li 83.5 2.2 7.5E-05 31.6 5.5 41 346-386 17-58 (66)
248 1h4r_A Merlin; FERM, neurofibr 83.3 5.6 0.00019 37.6 9.9 73 2-78 23-100 (314)
249 1vd2_A Protein kinase C, IOTA 82.6 5.3 0.00018 31.4 7.7 47 2-52 7-54 (89)
250 2f4m_B UV excision repair prot 81.6 0.61 2.1E-05 34.2 1.8 35 268-307 20-57 (61)
251 2k5p_A THis protein, thiamine- 80.9 1.5 5.1E-05 33.5 3.9 61 2-75 1-64 (78)
252 2kmm_A Guanosine-3',5'-BIS(dip 80.8 2.9 0.0001 30.6 5.4 63 2-76 1-63 (73)
253 1f0z_A THis protein; ubiquitin 79.7 2.1 7.1E-05 31.2 4.2 61 2-75 1-61 (66)
254 3hm6_X Plexin-B1; structural g 78.8 6.9 0.00024 41.0 9.1 64 13-77 275-362 (644)
255 1ixs_A Holliday junction DNA h 77.9 2 6.8E-05 31.4 3.6 28 156-186 14-41 (62)
256 2kl0_A Putative thiamin biosyn 77.5 1.8 6.3E-05 32.5 3.4 60 2-75 1-60 (73)
257 1tte_A Ubiquitin-conjugating e 77.1 1.5 5.1E-05 40.0 3.3 23 160-185 170-192 (215)
258 3e21_A HFAF1, FAS-associated f 77.1 2.1 7.2E-05 29.4 3.2 34 348-381 7-42 (45)
259 3m66_A Mterf3, mterf domain-co 76.9 8.2 0.00028 35.6 8.5 40 160-202 6-54 (270)
260 2i1j_A Moesin; FERM, coiled-co 76.5 8.6 0.00029 40.1 9.3 74 2-79 5-84 (575)
261 2k9x_A Tburm1, uncharacterized 76.5 0.61 2.1E-05 38.2 0.4 69 2-75 5-97 (110)
262 3ivf_A Talin-1; FERM domain, c 76.4 11 0.00037 36.5 9.6 72 2-75 86-166 (371)
263 3kuz_A Plexin-C1; structural g 76.2 12 0.00041 31.2 8.2 61 12-75 39-125 (126)
264 3onh_A Ubiquitin-activating en 76.0 5 0.00017 33.6 5.9 51 21-75 19-78 (127)
265 1ufz_A Hypothetical protein BA 76.0 5.5 0.00019 30.9 5.7 42 159-200 34-75 (83)
266 3ig3_A Plxna3 protein; plexin 75.7 12 0.0004 39.2 9.8 75 2-77 234-335 (627)
267 1vdl_A Ubiquitin carboxyl-term 75.7 3.8 0.00013 31.2 4.5 37 349-385 27-65 (80)
268 1v92_A NSFL1 cofactor P47; 3-h 73.1 6.9 0.00024 26.2 5.1 38 159-199 5-43 (46)
269 2q5w_D Molybdopterin convertin 72.4 5.9 0.0002 29.3 5.1 54 12-74 16-71 (77)
270 1p3q_Q VPS9P, vacuolar protein 72.2 1.5 5.2E-05 31.4 1.5 40 157-199 10-51 (54)
271 2lva_A Ubiquitin carboxyl-term 74.3 0.8 2.7E-05 38.2 0.0 36 349-384 21-58 (129)
272 2c7h_A RBBP6, retinoblastoma-b 71.6 9.3 0.00032 29.8 6.1 47 1-50 6-55 (86)
273 1wgr_A Growth factor receptor- 71.5 16 0.00054 29.3 7.6 72 2-75 10-91 (100)
274 1fm0_D Molybdopterin convertin 71.0 21 0.00073 26.3 8.1 56 13-74 18-75 (81)
275 1aip_C EF-TS, elongation facto 70.2 4.9 0.00017 36.2 4.8 37 160-199 4-41 (196)
276 1tr8_A Conserved protein (MTH1 70.1 6.1 0.00021 31.8 4.9 38 341-381 63-101 (102)
277 3qij_A Protein 4.1; cytoskelet 70.0 14 0.00047 34.8 8.3 70 2-73 18-92 (296)
278 1tr8_A Conserved protein (MTH1 68.8 5.7 0.00019 32.0 4.5 36 160-198 66-102 (102)
279 1wgy_A RAP guanine nucleotide 68.3 20 0.00069 28.9 7.6 69 5-76 13-86 (104)
280 4eut_A Serine/threonine-protei 68.2 19 0.00065 34.6 9.1 53 11-66 321-375 (396)
281 1xb2_B EF-TS, elongation facto 67.7 5.4 0.00019 38.1 4.8 36 161-199 6-42 (291)
282 2llv_A Heat shock protein STI1 65.5 2.9 0.0001 31.3 2.0 36 267-307 27-63 (71)
283 2dal_A Protein KIAA0794; FAS a 63.4 9.4 0.00032 27.7 4.4 40 158-200 14-54 (62)
284 2cu3_A Unknown function protei 62.8 8.5 0.00029 27.7 4.1 56 9-75 4-59 (64)
285 4gdk_A Ubiquitin-like protein 62.2 46 0.0016 25.9 8.5 61 14-77 22-86 (91)
286 1y8x_B Ubiquitin-activating en 59.9 6.9 0.00023 31.3 3.3 59 13-74 6-82 (98)
287 2kvr_A Ubiquitin carboxyl-term 59.7 8 0.00027 32.3 3.9 33 14-49 58-90 (130)
288 2hj1_A Hypothetical protein; s 57.6 15 0.0005 29.2 4.9 70 1-75 12-84 (97)
289 3qa8_A MGC80376 protein; kinas 56.5 12 0.0004 39.9 5.4 51 10-63 320-371 (676)
290 2dhz_A RAP guanine nucleotide 54.7 36 0.0012 28.1 7.0 68 4-76 12-92 (120)
291 1eo6_A GATE-16, golgi-associat 53.9 68 0.0023 26.1 8.6 59 16-77 49-111 (117)
292 3mva_O Transcription terminati 53.9 29 0.00099 33.2 7.4 38 158-198 18-59 (343)
293 2ylm_A Ubiquitin carboxyl-term 53.8 42 0.0014 34.4 9.0 69 2-73 340-418 (530)
294 1rws_A Hypothetical protein PF 52.2 5.2 0.00018 30.0 1.4 48 15-74 24-71 (77)
295 2g1e_A Hypothetical protein TA 52.2 39 0.0013 25.3 6.5 58 16-74 19-84 (90)
296 3ge3_C Toluene-4-monooxygenase 52.0 53 0.0018 25.3 7.0 72 4-75 6-82 (84)
297 2ns5_A Partitioning-defective 51.6 82 0.0028 24.4 9.5 73 1-75 2-81 (85)
298 2zjd_A Microtubule-associated 51.1 59 0.002 27.1 7.9 59 16-77 57-120 (130)
299 3e7l_A Transcriptional regulat 50.7 18 0.00061 25.7 4.1 42 151-202 4-45 (63)
300 1zoq_C CREB-binding protein, i 49.9 11 0.00037 25.8 2.5 23 274-296 19-41 (47)
301 1ixs_A Holliday junction DNA h 49.8 20 0.0007 25.9 4.2 27 344-370 15-41 (62)
302 2inc_C TOUB protein; DIIRON, 4 49.4 79 0.0027 24.3 7.6 63 14-76 15-82 (83)
303 4g3o_A E3 ubiquitin-protein li 49.3 33 0.0011 24.7 5.1 42 155-200 13-56 (58)
304 2dam_A ETEA protein; KIAA0887, 49.1 39 0.0013 24.8 5.7 43 157-200 16-58 (67)
305 2ktr_A Sequestosome-1; autopha 48.9 27 0.00093 28.7 5.3 75 1-77 18-116 (117)
306 1q1o_A Cell division control p 47.5 25 0.00087 28.0 4.8 47 2-51 6-64 (98)
307 1wz3_A Autophagy 12B, ATG12B, 47.0 61 0.0021 25.5 7.0 59 14-77 30-91 (96)
308 3hvz_A Uncharacterized protein 47.0 49 0.0017 24.9 6.2 63 3-77 7-69 (78)
309 2llw_A Heat shock protein STI1 46.8 19 0.00063 27.0 3.7 41 265-311 13-53 (71)
310 2eel_A Cell death activator CI 45.8 1.1E+02 0.0036 24.0 9.4 50 22-77 28-79 (91)
311 3w1s_C Ubiquitin-like protein 45.2 1.1E+02 0.0037 23.9 9.0 59 14-77 25-86 (91)
312 1b4u_A LIGA, LIGB, protocatech 44.6 52 0.0018 27.8 6.5 48 288-360 37-89 (139)
313 2r2q_A Gamma-aminobutyric acid 43.9 71 0.0024 25.6 7.1 58 16-76 48-109 (110)
314 3m95_A Autophagy related prote 43.1 83 0.0028 26.0 7.5 59 16-77 57-119 (125)
315 3e7l_A Transcriptional regulat 43.1 12 0.00042 26.6 2.1 24 358-381 19-42 (63)
316 4a6q_A Histone deacetylase com 42.7 1.3E+02 0.0046 25.4 8.8 64 13-78 55-140 (143)
317 3q8g_A CRAL-TRIO domain-contai 42.3 36 0.0012 32.3 5.9 45 339-383 32-84 (320)
318 3au4_A Myosin-X; protein-prote 42.1 53 0.0018 33.5 7.6 58 2-62 217-280 (555)
319 3rui_B Autophagy-related prote 41.3 1.2E+02 0.0041 24.7 8.2 59 16-77 51-113 (118)
320 2kmc_A Fermitin family homolog 40.7 1.4E+02 0.0047 23.8 10.5 74 2-76 20-99 (102)
321 2dzl_A Protein FAM100B; UBA-li 40.4 52 0.0018 24.0 5.2 37 161-200 19-56 (66)
322 1umq_A Photosynthetic apparatu 40.4 14 0.00048 28.3 2.2 23 359-381 42-64 (81)
323 3h9d_A ATG8, microtubule-assoc 39.9 1.3E+02 0.0044 24.6 8.1 59 16-77 52-114 (119)
324 3u52_E Phenol hydroxylase comp 38.6 88 0.003 25.7 6.8 61 14-74 40-107 (119)
325 3k6g_A Telomeric repeat-bindin 37.3 55 0.0019 26.3 5.2 42 343-384 7-52 (111)
326 2bt6_A Adrenodoxin 1; rutheniu 35.8 31 0.0011 27.1 3.7 28 1-28 6-33 (108)
327 1oai_A Nuclear RNA export fact 34.7 76 0.0026 22.6 5.2 44 158-204 6-55 (59)
328 1vdl_A Ubiquitin carboxyl-term 34.3 94 0.0032 23.5 5.7 41 159-200 24-64 (80)
329 1f2r_I Inhibitor of caspase-ac 33.5 1.1E+02 0.0039 24.3 6.5 50 22-77 37-90 (100)
330 2qho_B E3 ubiquitin-protein li 33.4 93 0.0032 21.6 5.1 38 160-200 10-49 (53)
331 2lnm_A Protein TIC 40, chlorop 33.4 21 0.00073 25.6 2.1 41 265-311 5-45 (62)
332 3cz6_A DNA-binding protein RAP 33.0 38 0.0013 29.5 3.9 45 157-204 61-112 (168)
333 3pvl_A Myosin VIIA isoform 1; 32.0 98 0.0034 32.5 7.8 46 2-49 264-309 (655)
334 2y5c_A Adrenodoxin-like protei 31.1 41 0.0014 26.4 3.7 28 1-28 5-32 (109)
335 2kna_A Baculoviral IAP repeat- 29.9 36 0.0012 27.2 3.1 22 162-186 30-51 (104)
336 2ztd_A Holliday junction ATP-d 29.8 33 0.0011 31.1 3.1 26 159-187 164-189 (212)
337 3e21_A HFAF1, FAS-associated f 29.6 74 0.0025 21.6 4.1 35 158-195 4-40 (45)
338 3hui_A Ferredoxin; cytochrome 29.3 44 0.0015 27.5 3.6 28 1-28 21-48 (126)
339 2ekf_A Ancient ubiquitous prot 29.0 1.5E+02 0.005 21.5 5.9 40 157-200 11-52 (61)
340 1kbh_B CREB-binding protein, n 28.4 19 0.00065 25.7 1.0 18 276-293 28-45 (59)
341 2ejs_A Autocrine motility fact 27.8 1.2E+02 0.0042 21.6 5.3 40 157-200 11-52 (58)
342 1oai_A Nuclear RNA export fact 27.7 1.4E+02 0.0049 21.1 5.7 40 341-380 2-42 (59)
343 3hrd_D Nicotinate dehydrogenas 27.4 54 0.0018 28.3 4.0 27 2-29 4-30 (160)
344 4gmv_A RAS-associated and plec 27.3 2.3E+02 0.0077 26.5 8.6 69 4-74 34-112 (281)
345 3hk0_A Growth factor receptor- 27.2 1.3E+02 0.0044 27.8 6.9 57 4-63 11-74 (256)
346 1ntc_A Protein (nitrogen regul 27.1 19 0.00064 27.7 0.9 24 358-381 51-74 (91)
347 2v1y_A Phosphatidylinositol-4, 26.9 99 0.0034 24.9 5.2 71 3-76 21-104 (108)
348 2ylm_A Ubiquitin carboxyl-term 26.5 55 0.0019 33.5 4.5 70 3-75 132-216 (530)
349 1v8c_A MOAD related protein; r 26.5 1.6E+02 0.0053 25.4 6.9 56 15-74 17-81 (168)
350 1aua_A Phosphatidylinositol tr 26.4 80 0.0027 29.0 5.4 45 339-383 23-75 (296)
351 1cuk_A RUVA protein; DNA repai 26.3 35 0.0012 30.5 2.7 25 159-186 160-184 (203)
352 3kvh_A Protein syndesmos; NUDT 26.2 62 0.0021 29.2 4.2 45 151-198 159-203 (214)
353 1n62_A Carbon monoxide dehydro 25.7 62 0.0021 28.0 4.1 28 2-30 4-31 (166)
354 1g2h_A Transcriptional regulat 25.6 30 0.001 24.5 1.7 26 174-202 21-46 (61)
355 4g3o_A E3 ubiquitin-protein li 25.2 1.6E+02 0.0055 21.1 5.4 43 341-384 12-56 (58)
356 2zc2_A DNAD-like replication p 25.0 79 0.0027 23.2 4.1 31 341-371 17-48 (78)
357 1ffv_A CUTS, iron-sulfur prote 24.8 63 0.0022 27.9 4.0 28 2-30 4-31 (163)
358 1pqs_A Cell division control p 24.5 56 0.0019 24.7 3.1 36 13-51 3-43 (77)
359 2kkc_A Sequestosome-1; P62, PB 24.0 1.2E+02 0.0041 24.1 5.1 54 22-77 42-101 (102)
360 1umq_A Photosynthetic apparatu 23.6 42 0.0014 25.5 2.3 27 174-202 41-67 (81)
361 3lxf_A Ferredoxin; iron, iron- 23.5 81 0.0028 24.6 4.1 27 3-29 2-28 (104)
362 1g2h_A Transcriptional regulat 23.5 36 0.0012 24.0 1.8 23 358-381 21-43 (61)
363 1pgy_A SWA2P; UBA, ubiquitin, 23.3 90 0.0031 21.2 3.5 29 344-372 4-33 (47)
364 3onq_A Regulator of polyketide 23.3 48 0.0016 30.6 3.1 23 362-384 200-222 (262)
365 2l9b_A MRNA 3'-END-processing 23.1 83 0.0029 25.5 4.0 29 274-306 58-86 (109)
366 3kxe_C Antitoxin protein PARD- 21.9 97 0.0033 23.9 4.1 43 339-381 7-51 (88)
367 1jq4_A Methane monooxygenase c 21.9 78 0.0027 24.1 3.7 29 2-30 5-33 (98)
368 2nvu_B Maltose binding protein 21.9 1.1E+02 0.0039 32.5 6.1 61 13-74 713-789 (805)
369 3eye_A PTS system N-acetylgala 21.7 80 0.0027 27.4 4.0 21 338-358 123-143 (168)
370 2ejs_A Autocrine motility fact 21.7 2.1E+02 0.0071 20.4 5.5 38 348-386 15-54 (58)
371 1t3q_A Quinoline 2-oxidoreduct 21.6 78 0.0027 27.2 3.9 28 2-30 10-37 (168)
372 4fp9_B Mterf domain-containing 21.5 1.9E+02 0.0064 27.7 7.0 32 339-370 105-137 (335)
373 2wlb_A ETP1-FD, electron trans 21.4 1.2E+02 0.0042 23.2 4.8 29 1-29 3-31 (103)
374 1eto_A FIS, factor for inversi 21.2 46 0.0016 26.1 2.1 23 359-381 59-81 (98)
375 2cu1_A Mitogen-activated prote 20.8 2.4E+02 0.0082 22.5 6.2 44 4-53 9-53 (103)
376 3r8s_T 50S ribosomal protein L 20.7 2E+02 0.0069 22.4 5.8 41 11-54 27-68 (93)
377 3k6g_A Telomeric repeat-bindin 20.5 1.4E+02 0.0047 24.0 4.7 38 161-201 15-53 (111)
378 1ltl_A DNA replication initiat 20.3 48 0.0016 30.8 2.4 54 266-319 20-75 (279)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=5.5e-75 Score=580.30 Aligned_cols=347 Identities=41% Similarity=0.682 Sum_probs=245.8
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
+|+|+||+++|++|.|+|++++||.+||++|+.+.++..+++++|||||+||+|+|+++|++|||+++++|++|+++.+.
T Consensus 7 ~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~ 86 (368)
T 1oqy_A 7 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKA 86 (368)
T ss_dssp CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCS
T ss_pred eEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCC
Confidence 48999999999999999999999999999999943211199999999999999999999999999999999777776654
Q ss_pred CCCCCCCCC-CCCCCC--CCCCCCCCCCCCCCCCCCCCCC--CCCCCC--CCCCCCCCCCccCCCCCCCCCccccccccc
Q 016387 81 PTGEGSTRS-TAPTKA--PQSSAPTPAATPATAPQTAVPI--STEPTP--APTPAPASASVSSVSATSESGVYGHAASNL 153 (390)
Q Consensus 81 ~~~~~~~~~-~~~~~~--~~p~~~~~~~~~~~~p~~~~p~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l 153 (390)
.+....+++ .+.+.+ +++.+++++..+ ++... +. ++.+.. .++.+|..++.. .+..+....++.+.|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~s~l 162 (368)
T 1oqy_A 87 GQGTSAPPEASPTAAPESSTSFPPAPTSGM--SHPPP-AAREDKSPSEESAPTTSPESVSGS-VPSSGSSGREEDAASTL 162 (368)
T ss_dssp SSCCCCCSSCCCCCSSSCCCSCCCSSSCCC--CCCCS-SSSCCCCCSCSCCCCSSTTCSCCC-SCSCCCSCCCCCCCTTT
T ss_pred CCCCCCCcccCCCCCccccCCCCCCCCCCC--CCCCc-cccccCCccccCCCCCCCCccccc-ccccccccccccccccc
Confidence 433111111 111100 011000000000 00000 00 000000 000011111000 01111123355678999
Q ss_pred ccCcchHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhCCCCccccCcccCCCCCCCCCCCCCCCCCCCCCC
Q 016387 154 VAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPA 233 (390)
Q Consensus 154 ~~g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~GIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (390)
|+|++++++|++||+|| |+|++|++|||++|||+|||||||++|||++.+...+ . +. . . ...
T Consensus 163 ~~g~~~~~~i~~l~~MG---f~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~----~------~~-~-~---~~~ 224 (368)
T 1oqy_A 163 VTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHG----S------VQ-E-S---QVS 224 (368)
T ss_dssp CCTTTHHHHHHHHHTTT---CCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCC----C------CC-C-C---CSS
T ss_pred cCCcchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccC----C------cc-c-c---ccc
Confidence 99999999999999999 9999999999999999999999999999987432210 0 00 0 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHhhCCHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHhHHHH
Q 016387 234 PVTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADF 313 (390)
Q Consensus 234 ~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~L~~~P~~~~lrq~vq~NP~ll~~~l~~i~~~NPql~~~I~~n~e~f 313 (390)
. . .+.++.+.++++|||++|||++||++||+||++|++|||+|+++||+|+++|++||++|
T Consensus 225 --~--~---------------~~~~~~~~~~l~~Lr~~pqf~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~F 285 (368)
T 1oqy_A 225 --E--Q---------------PATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQF 285 (368)
T ss_dssp --C--C---------------CCSSCCSCCTTHHHHHSHHHHHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHH
T ss_pred --c--c---------------cCccccccchHHHHhcChHHHHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHH
Confidence 0 0 00011245789999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCc------ccccc--CCCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcC
Q 016387 314 LRLINEPVQGGEGNL------GDQLA--GLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385 (390)
Q Consensus 314 l~~l~~~~~~~~g~~------~~~~~--~~~~~~~~~t~ee~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~ 385 (390)
|+||++++++. +.+ .+... ......|++|+||+++|+||++|||+|.+||+||++|+||+++|+||||+|.
T Consensus 286 l~~l~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~t~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~~ 364 (368)
T 1oqy_A 286 IQMLNEPPGEL-ADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQN 364 (368)
T ss_dssp HHHHHSCCCCS-CSSCCCSSSSCCCSCCCTTCSSCCCCTTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHHH
T ss_pred HHHHcCccccc-ccccccccccccccccCCccccccCCCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhCc
Confidence 99999986421 111 00000 1112468999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 016387 386 HEFE 389 (390)
Q Consensus 386 ~d~~ 389 (390)
+|+|
T Consensus 365 ~d~~ 368 (368)
T 1oqy_A 365 FDDE 368 (368)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 8764
No 2
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=100.00 E-value=1.5e-37 Score=277.41 Aligned_cols=127 Identities=33% Similarity=0.563 Sum_probs=99.5
Q ss_pred CCCchHHhh-CCHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHhHHHHHHHhcCCCCCC------------CCC
Q 016387 261 GAGSLDFLR-NSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG------------EGN 327 (390)
Q Consensus 261 ~~~~~~~L~-~~P~~~~lrq~vq~NP~ll~~~l~~i~~~NPql~~~I~~n~e~fl~~l~~~~~~~------------~g~ 327 (390)
.++++++|| ++|+|++||++|++||++|++||++|+++||+|+++|++||++||+||+++..+. +|.
T Consensus 21 ~~~~l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLnep~~~~~~~m~~~~~~~~~g~ 100 (171)
T 2qsf_X 21 QGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGE 100 (171)
T ss_dssp -------CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHHHCCC-----------------
T ss_pred ccCCHHHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHhCcccchhhhhccccccccccc
Confidence 456799999 9999999999999999999999999999999999999999999999999886431 010
Q ss_pred c---cccc--------cCCCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 016387 328 L---GDQL--------AGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387 (390)
Q Consensus 328 ~---~~~~--------~~~~~~~~~~t~ee~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~~d 387 (390)
. .+.. ....+..+.+||||+++|+||++|||+|+.||+||++|||||++|+||||++++|
T Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~i~~tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~~d 171 (171)
T 2qsf_X 101 DIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDHAD 171 (171)
T ss_dssp --------------------EECCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC---
T ss_pred ccccccccccccccCCCCCCcccCCCCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 0 0000 0111246899999999999999999999999999999999999999999999765
No 3
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.2e-20 Score=154.23 Aligned_cols=78 Identities=28% Similarity=0.495 Sum_probs=70.8
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
||+|+||+++|++|.|+|++++||.+||++|+.+.| +++++|||+|+||.|+|+++|++|||++|++|+|++++++.
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~ 77 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS---CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKS 77 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT---SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC---
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCC
Confidence 899999999999999999999999999999999999 99999999999999999999999999999999999987654
Q ss_pred C
Q 016387 81 P 81 (390)
Q Consensus 81 ~ 81 (390)
.
T Consensus 78 ~ 78 (106)
T 3m62_B 78 T 78 (106)
T ss_dssp -
T ss_pred C
Confidence 3
No 4
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=99.78 E-value=6.5e-20 Score=140.87 Aligned_cols=62 Identities=50% Similarity=0.930 Sum_probs=58.8
Q ss_pred CCchHHhhCCHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHhHHHHHHHhcCCCCC
Q 016387 262 AGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 323 (390)
Q Consensus 262 ~~~~~~L~~~P~~~~lrq~vq~NP~ll~~~l~~i~~~NPql~~~I~~n~e~fl~~l~~~~~~ 323 (390)
.+++++||++|+|++||++|++||++|+++|++|+++||+|+++|++||++|++||+++.++
T Consensus 3 ~~~l~~Lr~~Pqf~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e~~~~ 64 (72)
T 1pve_A 3 HMPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 64 (72)
T ss_dssp TCTTGGGTTCTTTTTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHSCSCC
T ss_pred CchHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcCCccC
Confidence 45789999999999999999999999999999999999999999999999999999998753
No 5
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=99.78 E-value=3.6e-19 Score=132.78 Aligned_cols=59 Identities=51% Similarity=0.983 Sum_probs=56.6
Q ss_pred CchHHhhCCHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHhHHHHHHHhcCCC
Q 016387 263 GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV 321 (390)
Q Consensus 263 ~~~~~L~~~P~~~~lrq~vq~NP~ll~~~l~~i~~~NPql~~~I~~n~e~fl~~l~~~~ 321 (390)
+++++||++|+|++||++|++||++|+++|++|+++||+|+++|++||++|++||++++
T Consensus 2 ~~l~~Lr~~Pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~e~~ 60 (61)
T 2f4m_B 2 HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60 (61)
T ss_dssp CGGGGGTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTSCC
T ss_pred chHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcccC
Confidence 46899999999999999999999999999999999999999999999999999998764
No 6
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.76 E-value=1.5e-18 Score=139.10 Aligned_cols=76 Identities=29% Similarity=0.427 Sum_probs=71.7
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
+|+|+||+++|+++.|+|++++||.+||++|+.++| +++++|||+|+||.|+|+++|++|+| ++++|||+++.+..
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 499999999999999999999999999999999999 99999999999999999999999999 89999999986543
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=134.30 Aligned_cols=74 Identities=28% Similarity=0.358 Sum_probs=72.2
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~ 78 (390)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC---CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 99999999999999999999999999999999999 999999999999999999999999999999999999875
No 8
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.76 E-value=1.8e-18 Score=139.93 Aligned_cols=72 Identities=26% Similarity=0.348 Sum_probs=70.0
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEE
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v 75 (390)
||+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||+|+||+|+|+.+|++|+|++|++|++..
T Consensus 21 mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G---ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 21 MIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG---TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC---CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 699999999999999999999999999999999999 999999999999999999999999999999999863
No 9
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=4.6e-18 Score=138.18 Aligned_cols=77 Identities=47% Similarity=0.765 Sum_probs=72.7
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETV---QGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~---~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~ 78 (390)
|+|+||+++|+.+.++|++++||.+||++|+.. .| +|+++|||+|+||.|+|+++|++|||++|++|+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA---FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT---CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC---CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 799999999999999999999999999999999 67 999999999999999999999999999999999999876
Q ss_pred CCC
Q 016387 79 KRP 81 (390)
Q Consensus 79 ~~~ 81 (390)
+..
T Consensus 78 ~~~ 80 (95)
T 1uel_A 78 KAV 80 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 10
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=8.1e-19 Score=140.94 Aligned_cols=75 Identities=28% Similarity=0.517 Sum_probs=70.3
Q ss_pred CEEEEEEeCCCcEEEEEeC--CCCCHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCchhhhcc-CCCCEEEEEEe
Q 016387 1 MMKIFVKTLKGTSFDVEVK--PEDTVFDVKMKI-ETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKV-AENSFVVIMLT 76 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~--~~~TV~dLK~~I-~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI-~~~s~I~v~v~ 76 (390)
||+|+||+++|++|.|+|+ +++||.+||++| ++..| +|+++|||||+||+|+|+.+|++|+| .+|++|+|+++
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC---SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEEC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC---CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcC
Confidence 8999999999999988755 999999999999 98889 99999999999999999999999999 69999999987
Q ss_pred cC
Q 016387 77 KN 78 (390)
Q Consensus 77 k~ 78 (390)
+.
T Consensus 78 ~~ 79 (87)
T 2lxa_A 78 PN 79 (87)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 11
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.75 E-value=2.7e-18 Score=137.64 Aligned_cols=78 Identities=33% Similarity=0.541 Sum_probs=72.6
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~~ 81 (390)
|+|+||+++|+++.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999999988755
Q ss_pred C
Q 016387 82 T 82 (390)
Q Consensus 82 ~ 82 (390)
.
T Consensus 78 ~ 78 (88)
T 4fbj_B 78 G 78 (88)
T ss_dssp -
T ss_pred C
Confidence 3
No 12
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.75 E-value=4.8e-18 Score=134.39 Aligned_cols=77 Identities=40% Similarity=0.699 Sum_probs=70.6
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETV---QGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~---~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
+|+|+||+++|+.+.++|++++||.+||++|+.. .| +++++|||+|+||.|+|+++|++|||++|++|||++++
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT---CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC---CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 4999999999999999999999999999999998 77 99999999999999999999999999999999999987
Q ss_pred CCC
Q 016387 78 NKR 80 (390)
Q Consensus 78 ~~~ 80 (390)
+++
T Consensus 82 ~~~ 84 (85)
T 2wyq_A 82 TKA 84 (85)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 13
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=9.4e-18 Score=139.05 Aligned_cols=77 Identities=29% Similarity=0.377 Sum_probs=71.9
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
+|+|+||+.+|+ +.|+|++++||.+||++|+.++| +++++|||+|+||.|+|+++|++|+|+++++|||+++++..
T Consensus 17 ~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 17 LIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp EEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT---CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred eEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 499999999885 79999999999999999999999 99999999999999999999999999999999999987654
Q ss_pred C
Q 016387 81 P 81 (390)
Q Consensus 81 ~ 81 (390)
+
T Consensus 93 ~ 93 (106)
T 1wx7_A 93 A 93 (106)
T ss_dssp S
T ss_pred C
Confidence 3
No 14
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=5.6e-18 Score=134.94 Aligned_cols=72 Identities=39% Similarity=0.592 Sum_probs=70.5
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee-cCCCCchhhhccCCCCEEEEEEe
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKV-LKDDTTLEENKVAENSFVVIMLT 76 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~Gki-L~D~~tL~d~gI~~~s~I~v~v~ 76 (390)
|+|+||++.|+.+.++|++++||.+||++|+.+.| +|+++|||+|+||. |+|+++|++|||++|++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH---IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 99999999999999999999999999999999999 99999999999999 99999999999999999999985
No 15
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.74 E-value=6e-18 Score=136.17 Aligned_cols=75 Identities=41% Similarity=0.647 Sum_probs=72.4
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~ 78 (390)
.|+|+||+++|+++.|+|++++||.+||++|+..+| +++++|||+|+||.|+|+++|++|||++|++|+|++|.+
T Consensus 17 ~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 17 SMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp SEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred eEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 399999999999999999999999999999999999 999999999999999999999999999999999999864
No 16
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=3.1e-18 Score=140.73 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=69.7
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEE
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v 75 (390)
||+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||+|+||+|+|+.+|++|||+++++|+|+.
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G---ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 699999999999999999999999999999999999 999999999999999999999999999999999864
No 17
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.73 E-value=9.5e-18 Score=135.87 Aligned_cols=78 Identities=40% Similarity=0.624 Sum_probs=73.1
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~~ 81 (390)
|+|+||+++|+.+.|+|++++||.+||++|++.+| +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.+...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999987654
Q ss_pred C
Q 016387 82 T 82 (390)
Q Consensus 82 ~ 82 (390)
.
T Consensus 79 ~ 79 (96)
T 3k9o_B 79 D 79 (96)
T ss_dssp -
T ss_pred c
Confidence 3
No 18
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.73 E-value=5.8e-18 Score=138.90 Aligned_cols=74 Identities=26% Similarity=0.508 Sum_probs=69.3
Q ss_pred EEEEEEeCCCcEEEE--EeCCCCCHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCchhhhcc-CCCCEEEEEEec
Q 016387 2 MKIFVKTLKGTSFDV--EVKPEDTVFDVKMKI-ETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKV-AENSFVVIMLTK 77 (390)
Q Consensus 2 MkI~Vktl~g~~~~i--eV~~~~TV~dLK~~I-~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI-~~~s~I~v~v~k 77 (390)
|+|+||+++|++|.+ +|++++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| ++|++|+||+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC---SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC---CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 899999999998777 566999999999999 77778 99999999999999999999999999 999999999987
Q ss_pred C
Q 016387 78 N 78 (390)
Q Consensus 78 ~ 78 (390)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 19
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=3.6e-17 Score=130.62 Aligned_cols=78 Identities=23% Similarity=0.380 Sum_probs=73.4
Q ss_pred CEEEEEEeCCC-cEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecC
Q 016387 1 MMKIFVKTLKG-TSFDV-EVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (390)
Q Consensus 1 mMkI~Vktl~g-~~~~i-eV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~ 78 (390)
+|+|+||+++| +++.| +|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|||+++.+
T Consensus 7 ~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 7 GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD---VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp CEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC---CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC---cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 59999999999 69999 59999999999999999999 999999999999999999999999999999999999877
Q ss_pred CCC
Q 016387 79 KRP 81 (390)
Q Consensus 79 ~~~ 81 (390)
...
T Consensus 84 gG~ 86 (89)
T 1wy8_A 84 SGP 86 (89)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.72 E-value=1.5e-17 Score=132.15 Aligned_cols=76 Identities=34% Similarity=0.562 Sum_probs=73.0
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
.|+|+||+++|+++.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 12 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 12 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred cEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 399999999999999999999999999999999999 9999999999999999999999999999999999998754
No 21
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.7e-17 Score=135.64 Aligned_cols=76 Identities=39% Similarity=0.600 Sum_probs=73.1
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
.|+|+||+++|++|.|+|++++||.+||++|+.+++ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 22 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 22 PMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 489999999999999999999999999999999999 9999999999999999999999999999999999998764
No 22
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.9e-17 Score=137.28 Aligned_cols=77 Identities=21% Similarity=0.431 Sum_probs=73.5
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
+|+|+||+++|+++.++|++++||.+||.+|+.+.| +++++|||+|+||.|+|+++|++|||++|++|||+++++..
T Consensus 23 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 23 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG---VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC---CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 399999999999999999999999999999999999 99999999999999999999999999999999999987654
No 23
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.8e-17 Score=127.99 Aligned_cols=74 Identities=26% Similarity=0.363 Sum_probs=70.8
Q ss_pred CEEEEEEeCCCcEE-EEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 1 MMKIFVKTLKGTSF-DVE-VKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 1 mMkI~Vktl~g~~~-~ie-V~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
.|+|+||+++|+.+ .++ |++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|||++|++|||+++.
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g---ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH---VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 49999999999985 899 9999999999999999999 99999999999999999999999999999999999875
No 24
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.71 E-value=3e-17 Score=126.34 Aligned_cols=75 Identities=35% Similarity=0.579 Sum_probs=71.7
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
|+|+||+.+|+++.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|||+++++|+|+++.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 79999999999999999999999999999999999 9999999999999999999999999999999999998653
No 25
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=128.35 Aligned_cols=74 Identities=26% Similarity=0.418 Sum_probs=71.3
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
+|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+.+|++|||++|++|+|+++.
T Consensus 7 ~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 7 GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 499999999999999999999999999999999999 99999999999999999999999999999999999875
No 26
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.4e-17 Score=129.02 Aligned_cols=77 Identities=40% Similarity=0.624 Sum_probs=73.9
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
+|+|+||+++|+++.++|++++||.+||++|++.++ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 599999999999999999999999999999999999 99999999999999999999999999999999999987654
No 27
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=132.23 Aligned_cols=76 Identities=28% Similarity=0.339 Sum_probs=70.7
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+..
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC---SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999987653
No 28
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.6e-17 Score=129.37 Aligned_cols=77 Identities=29% Similarity=0.470 Sum_probs=73.7
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
+|+|+||+++|+++.++|++++||.+||++|++..+ +|+++|||+|+||.|+|+++|++|+|+++++|||+++.+..
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 7 GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC---CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC---CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 499999999999999999999999999999999999 99999999999999999999999999999999999987653
No 29
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2e-17 Score=130.52 Aligned_cols=77 Identities=39% Similarity=0.588 Sum_probs=72.4
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
+|+|+||+++|+++.++|++++||.+||++|++.++ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 489999999999999999999999999999999999 99999999999999999999999999999999999997654
No 30
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.5e-17 Score=132.26 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=71.9
Q ss_pred CEEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHh--CCCCCCCCCeEEEeCCeecCCCCchhhh--ccCCCCEEEEE
Q 016387 1 MMKIFVKTLKGT--SFDVEVKPEDTVFDVKMKIETVQ--GSDVYPAAQQMLIYQGKVLKDDTTLEEN--KVAENSFVVIM 74 (390)
Q Consensus 1 mMkI~Vktl~g~--~~~ieV~~~~TV~dLK~~I~~~~--g~~~ip~~~QkLi~~GkiL~D~~tL~d~--gI~~~s~I~v~ 74 (390)
+|+|+||+.+++ .+.|+|++++||.+||++|++++ + +++++|||||+||+|+|+++|++| +|+++++|||+
T Consensus 7 ~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~---i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 7 GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER---PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC---CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred EEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC---CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 389999999998 67788889999999999999998 8 999999999999999999999999 99999999999
Q ss_pred EecCCCC
Q 016387 75 LTKNKRP 81 (390)
Q Consensus 75 v~k~~~~ 81 (390)
++.+...
T Consensus 84 ~~~~gg~ 90 (93)
T 1wgd_A 84 CNVKSGP 90 (93)
T ss_dssp CCCCCCC
T ss_pred eCCCCCC
Confidence 9876543
No 31
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=130.36 Aligned_cols=71 Identities=31% Similarity=0.466 Sum_probs=69.0
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEe
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~ 76 (390)
|+|+||+++|+++.++|++++||.+||++|+++.| +|+++|||+|+||.|+|+.+|++||| +|++|||++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 89999999999999999999999999999999999 99999999999999999999999999 8999999875
No 32
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.70 E-value=5.3e-17 Score=124.97 Aligned_cols=75 Identities=41% Similarity=0.652 Sum_probs=72.1
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
|+|+||+.+|+.+.++|++++||.+||++|++.+| +|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++.+.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 79999999999999999999999999999999999 9999999999999999999999999999999999998653
No 33
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.70 E-value=4e-17 Score=127.50 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=72.5
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
|+|+||+.+|+++.++|++++||.+||++|+++.| +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g---i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998654
No 34
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=3.4e-17 Score=135.81 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=70.9
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---------------CCeEEEeCCeecC-CCCchhhhc
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPA---------------AQQMLIYQGKVLK-DDTTLEENK 64 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~---------------~~QkLi~~GkiL~-D~~tL~d~g 64 (390)
.|+|+||+++|++|.|+|++++||.+||++|+++.+ +++ +.|+|||+||+|. |+++|++||
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~---i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ---LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH---HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 499999999999999999999999999999999998 665 4679999999996 569999999
Q ss_pred cCCCCEEEEEEecCCC
Q 016387 65 VAENSFVVIMLTKNKR 80 (390)
Q Consensus 65 I~~~s~I~v~v~k~~~ 80 (390)
|++|++|||+++.+..
T Consensus 84 I~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 84 IRNRDEVSFIKKLGQK 99 (105)
T ss_dssp CCSSEEEEEEECSCSC
T ss_pred CCCCCEEEEEehhccC
Confidence 9999999999998765
No 35
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=8.4e-17 Score=132.53 Aligned_cols=77 Identities=23% Similarity=0.416 Sum_probs=71.0
Q ss_pred CEEEEEEeCCC----cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhhccCCCCEEEEEE
Q 016387 1 MMKIFVKTLKG----TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDD-TTLEENKVAENSFVVIML 75 (390)
Q Consensus 1 mMkI~Vktl~g----~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~-~tL~d~gI~~~s~I~v~v 75 (390)
+|+|+||+..+ ++|.|+|++++||.+||++|+.++| +++++|||+|+||.|+|+ ++|++|+|+++++|||+.
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG---VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC---CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC---cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 59999999754 7999999999999999999999999 999999999999999988 699999999999999998
Q ss_pred ecCCC
Q 016387 76 TKNKR 80 (390)
Q Consensus 76 ~k~~~ 80 (390)
+.+..
T Consensus 84 ~~~gg 88 (102)
T 1v5o_A 84 KDNVG 88 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76554
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=1e-16 Score=130.31 Aligned_cols=75 Identities=35% Similarity=0.449 Sum_probs=71.7
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhhccCCCCEEEEEEecCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDD-TTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~-~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
|+|+||+.+| ++.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+ ++|++|||+++++|+|+++.+..
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN---TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS---SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 8999999888 899999999999999999999999 999999999999999999 99999999999999999987654
No 37
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=8.7e-17 Score=130.35 Aligned_cols=74 Identities=30% Similarity=0.316 Sum_probs=68.7
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhhccCCCCEEEEEEecCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDD-TTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~-~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
+|+|+||+++|+.+.++|++++||.+||++|+... +++|||+|+||.|+|+ ++|++|||++|++|||++++++
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 7 GINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ------ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST------TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC------cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 49999999999999999999999999999998773 7899999999999999 9999999999999999998755
Q ss_pred C
Q 016387 80 R 80 (390)
Q Consensus 80 ~ 80 (390)
.
T Consensus 81 ~ 81 (95)
T 1wia_A 81 A 81 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 38
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=6.2e-17 Score=129.67 Aligned_cols=75 Identities=37% Similarity=0.661 Sum_probs=69.9
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|||+++++|+|+++.+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 39
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=8e-17 Score=132.29 Aligned_cols=74 Identities=22% Similarity=0.139 Sum_probs=66.1
Q ss_pred EEEEEEeCC----CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 2 MKIFVKTLK----GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 2 MkI~Vktl~----g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
..|.|+..+ ++++.|+|++++||.+||++|+++.| +|+++|||||+||+|+|+++|++|+|+++++|+||+ .
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g---ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~-l 91 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG---LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE-L 91 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT---CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC-C
T ss_pred EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC---cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE-E
Confidence 356777776 77899999999999999999999999 999999999999999999999999999999995554 4
Q ss_pred CC
Q 016387 78 NK 79 (390)
Q Consensus 78 ~~ 79 (390)
+.
T Consensus 92 rg 93 (100)
T 1wju_A 92 KQ 93 (100)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 40
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.69 E-value=1.1e-16 Score=133.81 Aligned_cols=76 Identities=41% Similarity=0.644 Sum_probs=73.2
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
+|+|+||+++|+.|.|+|++++||.+||.+|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|||+++.+.
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 499999999999999999999999999999999999 9999999999999999999999999999999999998764
No 41
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.68 E-value=8.6e-17 Score=131.29 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=72.7
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
|+|+||+++|+++.|+|.+++||.+||++|+.+.| +|+++|||+|+|+.|.|+++|++|+|+++++|+|+++.+.
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g---ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 42
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=5.3e-17 Score=131.81 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=72.1
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
+|+|+||+. |+.+.|+|++++||.+||++|+...+ +++++|||+|+||.|+|+++|++|+|+++++|||+++.+..
T Consensus 17 ~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 17 IIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH---CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC---SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred cEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 489999998 99999999999999999999999999 99999999999999999999999999999999999987654
No 43
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.1e-16 Score=131.54 Aligned_cols=76 Identities=29% Similarity=0.381 Sum_probs=71.5
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
+|+|+||+.+|+ +.|+|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|||+++++|+|+++.+..
T Consensus 22 ~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 22 LIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred eEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 489999999886 79999999999999999999999 99999999999999999999999999999999999987654
No 44
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.68 E-value=1.8e-16 Score=122.63 Aligned_cols=71 Identities=37% Similarity=0.624 Sum_probs=68.5
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEe
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~ 76 (390)
|+|+||+ +|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 8999999 899999999999999999999999999 9999999999999999999999999999999999875
No 45
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=129.86 Aligned_cols=75 Identities=27% Similarity=0.366 Sum_probs=71.2
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
+|+|+||+. |+.+.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++++.
T Consensus 25 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 25 IMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK---SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT---CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred eEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 389999998 88999999999999999999999999 9999999999999999999999999999999999997654
No 46
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.9e-16 Score=135.34 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=69.9
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
+|+|+||+. |+.+.|+|++++||.+||++|+.++| +++++|||+|+||+|+|+++|++|||++|++|+|+++++..
T Consensus 32 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 32 IIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK---SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC---SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred cEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC---cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 499999999 99999999999999999999999999 99999999999999999999999999999999999987654
Q ss_pred C
Q 016387 81 P 81 (390)
Q Consensus 81 ~ 81 (390)
.
T Consensus 108 ~ 108 (125)
T 1j8c_A 108 S 108 (125)
T ss_dssp -
T ss_pred C
Confidence 3
No 47
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.67 E-value=8.8e-18 Score=119.53 Aligned_cols=47 Identities=51% Similarity=0.897 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcCCCCC
Q 016387 343 TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 389 (390)
Q Consensus 343 t~ee~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~~d~~ 389 (390)
||||.++|+||++|||+|..||+||++|+||+++|+||||+++.|++
T Consensus 1 ~~~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~~ 47 (47)
T 1dv0_A 1 GSQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 47 (47)
T ss_dssp --CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCCC
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCCC
Confidence 68899999999999999999999999999999999999999987754
No 48
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.67 E-value=2.5e-16 Score=128.31 Aligned_cols=76 Identities=41% Similarity=0.643 Sum_probs=72.8
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
|+|+||+.+|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999987643
No 49
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.66 E-value=5.5e-17 Score=116.45 Aligned_cols=49 Identities=55% Similarity=0.981 Sum_probs=47.1
Q ss_pred ccccCcchHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhCCCC
Q 016387 152 NLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203 (390)
Q Consensus 152 ~l~~g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~GIP~ 203 (390)
+|++|+.+++.|++|++|| |+|++|++|||+++||++||||||++|||+
T Consensus 1 ~~~~~~~~~~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~e~L~~gip~ 49 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPG 49 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTT---CCHHHHHHHHHTTTSCSHHHHHHHHHCCCC
T ss_pred CCCCCccCHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4789999999999999999 999999999999999999999999999995
No 50
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=1.6e-16 Score=129.62 Aligned_cols=73 Identities=23% Similarity=0.334 Sum_probs=68.2
Q ss_pred CEEEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecC
Q 016387 1 MMKIFVKTLKGTSF-DVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (390)
Q Consensus 1 mMkI~Vktl~g~~~-~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~ 78 (390)
||+|+|| +.|+.| .|+|++++||.+||.+|++.+| +|+++|||+|+||.|+|+ +|++|+|+++++|+||.+..
T Consensus 7 ~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tg---ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 7 GYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTG---VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTC---CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 5899999 578999 6999999999999999999999 999999999999999999 99999999999999987644
No 51
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.48 E-value=6.1e-18 Score=131.00 Aligned_cols=75 Identities=28% Similarity=0.464 Sum_probs=72.2
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
|+|+||+.+|+++.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|||++|++|||+++.+.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG---VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 52
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=128.02 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=70.0
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
+|+|+||+ |+.+.++|++++||.+||++|+++.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 19 ~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 19 SMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG---IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp -CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT---CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred cEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC---cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 48999998 89999999999999999999999999 9999999999999999999999999999999999998754
No 53
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=8.9e-16 Score=129.50 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=66.2
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH------hCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCC--EEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETV------QGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENS--FVVI 73 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~------~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s--~I~v 73 (390)
|+|+||+++|+++.|+|++++||.+||++|+.. .+.. +++++|||||+||+|+|+.+|++|+|+.++ +|||
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p-~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhL 95 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQV-SSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL 95 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCC-CCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCC-CChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEE
Confidence 899999999999999999999999999999994 3411 369999999999999999999999998775 5666
Q ss_pred EEecC
Q 016387 74 MLTKN 78 (390)
Q Consensus 74 ~v~k~ 78 (390)
+++..
T Consensus 96 vlr~~ 100 (116)
T 1wgh_A 96 VARET 100 (116)
T ss_dssp EECSS
T ss_pred EccCC
Confidence 66554
No 54
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.65 E-value=9e-16 Score=128.22 Aligned_cols=76 Identities=41% Similarity=0.644 Sum_probs=72.9
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
+|+|+||+.+|+.+.++|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 35 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred eEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 499999999999999999999999999999999999 9999999999999999999999999999999999998764
No 55
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=9.1e-16 Score=123.60 Aligned_cols=74 Identities=28% Similarity=0.430 Sum_probs=68.2
Q ss_pred CEEEEEEeCCCcEEEEEeCCC-----CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCC-CCchhhhccCCCCEEEEE
Q 016387 1 MMKIFVKTLKGTSFDVEVKPE-----DTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKD-DTTLEENKVAENSFVVIM 74 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~-----~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D-~~tL~d~gI~~~s~I~v~ 74 (390)
||+|+||+ .|+.+.|+|+++ +||.+||++|+..+| +|+++|||+|+||.|+| +++|++|+|+++++|||+
T Consensus 7 ~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 7 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG---VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred eEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC---cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 59999997 588999999985 999999999999999 99999999999999998 568999999999999998
Q ss_pred EecC
Q 016387 75 LTKN 78 (390)
Q Consensus 75 v~k~ 78 (390)
.++.
T Consensus 83 ~~~~ 86 (92)
T 1wxv_A 83 GKKN 86 (92)
T ss_dssp SCCS
T ss_pred ecCC
Confidence 7643
No 56
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.64 E-value=8e-16 Score=138.00 Aligned_cols=77 Identities=39% Similarity=0.591 Sum_probs=73.2
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~~ 81 (390)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|++|++|||+++.+...
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999999987643
No 57
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=130.16 Aligned_cols=75 Identities=19% Similarity=0.303 Sum_probs=67.0
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHH------HhCCCCC--CCCCeEEEeCCeecCCCCchhhhccCCCC--E
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIET------VQGSDVY--PAAQQMLIYQGKVLKDDTTLEENKVAENS--F 70 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~------~~g~~~i--p~~~QkLi~~GkiL~D~~tL~d~gI~~~s--~ 70 (390)
+|+|+||+++|+++.|+|++++||.+||++|++ +.+ + ++++|||||+||+|+|+++|++|+|++++ +
T Consensus 17 ~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~---ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 17 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEE---QVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 93 (125)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCC---TTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred eEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccC---CCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 499999999999999999999999999999999 445 5 58999999999999999999999999877 5
Q ss_pred EEEEEecC
Q 016387 71 VVIMLTKN 78 (390)
Q Consensus 71 I~v~v~k~ 78 (390)
|||+++.+
T Consensus 94 lhlv~r~~ 101 (125)
T 2gow_A 94 MHLVARET 101 (125)
T ss_dssp EEEEECSC
T ss_pred EEEEecCC
Confidence 66666654
No 58
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=8.2e-16 Score=127.70 Aligned_cols=74 Identities=23% Similarity=0.198 Sum_probs=68.5
Q ss_pred EEEEEEeCCC---cEEEEEeC--------C-CCCHHHHHHHHHHHh--CCCCCCCCC-eEEEeCCeecCCCCchhhhccC
Q 016387 2 MKIFVKTLKG---TSFDVEVK--------P-EDTVFDVKMKIETVQ--GSDVYPAAQ-QMLIYQGKVLKDDTTLEENKVA 66 (390)
Q Consensus 2 MkI~Vktl~g---~~~~ieV~--------~-~~TV~dLK~~I~~~~--g~~~ip~~~-QkLi~~GkiL~D~~tL~d~gI~ 66 (390)
|+|+||+.++ ++|.|+|+ + ++||.+||++|+... | +++++ |||||+||.|+|+++|++|+|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g---ip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES---VPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT---CCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC---CChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 7899999998 88999954 4 499999999999999 8 99999 9999999999999999999999
Q ss_pred CCCEEEEEEecC
Q 016387 67 ENSFVVIMLTKN 78 (390)
Q Consensus 67 ~~s~I~v~v~k~ 78 (390)
++++|||+++.+
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998754
No 59
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.62 E-value=1.1e-15 Score=130.34 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=68.3
Q ss_pred EEEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhC--CCCCCC--CCeEEEeCCeecCCCCchhhhccCCC------CE
Q 016387 2 MKIFVKTLKGTSF-DVEVKPEDTVFDVKMKIETVQG--SDVYPA--AQQMLIYQGKVLKDDTTLEENKVAEN------SF 70 (390)
Q Consensus 2 MkI~Vktl~g~~~-~ieV~~~~TV~dLK~~I~~~~g--~~~ip~--~~QkLi~~GkiL~D~~tL~d~gI~~~------s~ 70 (390)
|+|+||+++|+.+ .+++++++||.+||++|+...+ ...+|+ ++|||||+||+|+|+++|++|+|.++ .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 8999999999988 6999999999999999966542 112775 89999999999999999999999998 56
Q ss_pred EEEEEecCCC
Q 016387 71 VVIMLTKNKR 80 (390)
Q Consensus 71 I~v~v~k~~~ 80 (390)
|||+++.+..
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 8888887654
No 60
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.62 E-value=6.5e-16 Score=126.88 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=64.6
Q ss_pred EEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHh-CCCCCCCCCeEEEeCCeecCCCCchhhh--ccCCCCEEEEE
Q 016387 2 MKIFVKTLKGT--SFDVEVKPEDTVFDVKMKIETVQ-GSDVYPAAQQMLIYQGKVLKDDTTLEEN--KVAENSFVVIM 74 (390)
Q Consensus 2 MkI~Vktl~g~--~~~ieV~~~~TV~dLK~~I~~~~-g~~~ip~~~QkLi~~GkiL~D~~tL~d~--gI~~~s~I~v~ 74 (390)
|+|+||+++|+ .+.|+|++++||.+||++|+++. |. .++++|||||+||+|+|+++|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~--pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK--PLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC--CCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC--CChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 89999999998 67899999999999999999974 51 456999999999999999999999 99999999975
No 61
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.62 E-value=1.6e-15 Score=133.69 Aligned_cols=76 Identities=28% Similarity=0.339 Sum_probs=72.5
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+.+|++|+|++|++|||+++.+..
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC---CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999998754
No 62
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.62 E-value=1.2e-15 Score=122.85 Aligned_cols=73 Identities=30% Similarity=0.453 Sum_probs=68.9
Q ss_pred CEEEEEEeCCCcEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCchhhhccCCCCEEEEEEe
Q 016387 1 MMKIFVKTLKGTSFDV-EVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI---YQGKVLKDDTTLEENKVAENSFVVIMLT 76 (390)
Q Consensus 1 mMkI~Vktl~g~~~~i-eV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi---~~GkiL~D~~tL~d~gI~~~s~I~v~v~ 76 (390)
+|+|+||. .|++|.| +|++++||.+||++|++++| +|+++|||+ |+||.|+|+.+|++|+|+++++|+||.+
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g---ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG---VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC---CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 48999995 7899999 99999999999999999999 999999999 9999999999999999999999999875
Q ss_pred c
Q 016387 77 K 77 (390)
Q Consensus 77 k 77 (390)
.
T Consensus 83 ~ 83 (90)
T 1v5t_A 83 R 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 63
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.61 E-value=8.1e-16 Score=129.81 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=65.2
Q ss_pred EEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccC-------CCCEEEE
Q 016387 2 MKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVA-------ENSFVVI 73 (390)
Q Consensus 2 MkI~Vktl~g~-~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~-------~~s~I~v 73 (390)
|.++|+...++ ++.|+|++++||.+||++|+.+.| +|+++|||||+||.|+|+++|++|||+ .+++|||
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg---IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 45555555565 589999999999999999999999 999999999999999999999999999 6999999
Q ss_pred EEe
Q 016387 74 MLT 76 (390)
Q Consensus 74 ~v~ 76 (390)
++|
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 998
No 64
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.3e-15 Score=126.58 Aligned_cols=76 Identities=37% Similarity=0.572 Sum_probs=73.0
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
++|+||+++|+++.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 58999999999999999999999999999999999 99999999999999999999999999999999999987654
No 65
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.61 E-value=1.5e-15 Score=126.86 Aligned_cols=76 Identities=24% Similarity=0.298 Sum_probs=72.7
Q ss_pred EEEEEEeC---CCcEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 2 MKIFVKTL---KGTSFDVEVKP-EDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 2 MkI~Vktl---~g~~~~ieV~~-~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
|+|+||+. +|+.+.++|++ ++||.+||++|+..+| +|+++|||+|+|+.|+|+++|++|+|++|++|+|+++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ---IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT---CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 89999998 88999999998 9999999999999999 99999999999999999999999999999999999987
Q ss_pred CCC
Q 016387 78 NKR 80 (390)
Q Consensus 78 ~~~ 80 (390)
+..
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 66
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=9.7e-16 Score=124.67 Aligned_cols=72 Identities=29% Similarity=0.459 Sum_probs=66.8
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
+|+|+|| +.|++|.|+|++++||.+||++|+..+| +|+++|||+|+||.| |+.+|++|+|+++++|||+.++
T Consensus 17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg---ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG---LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC---SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 4899999 6789999999999999999999999999 999999999999999 5569999999999999998754
No 67
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=3.6e-16 Score=128.69 Aligned_cols=72 Identities=36% Similarity=0.622 Sum_probs=68.3
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
|+|+||+ .|+.+.|+|++++||.+||++|++++| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS---CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 6788997 899999999999999999999999999 99999999999999999999999999999999999764
No 68
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.60 E-value=1e-15 Score=128.86 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=67.7
Q ss_pred EEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCC-------CCEEEE
Q 016387 2 MKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAE-------NSFVVI 73 (390)
Q Consensus 2 MkI~Vktl~g~-~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~-------~s~I~v 73 (390)
|.|+|+...++ ++.++|++++||.+||++|+.+.| +|+++|||||+||.|+|+++|++|||++ +++||+
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g---iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC---CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 56777766666 688999999999999999999999 9999999999999999999999999999 999999
Q ss_pred EEec
Q 016387 74 MLTK 77 (390)
Q Consensus 74 ~v~k 77 (390)
++|.
T Consensus 78 vlr~ 81 (118)
T 4ajy_B 78 AFRA 81 (118)
T ss_dssp EECC
T ss_pred EEec
Confidence 9986
No 69
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=134.23 Aligned_cols=75 Identities=41% Similarity=0.655 Sum_probs=72.4
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~ 78 (390)
+|+|+||+++|+++.|+|++++||.+||++|+.++| +|+++|||+|+|+.|+|+.+|++|||+++++|+|+++.+
T Consensus 20 ~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 20 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp CEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCccccccCCHhHcCCcccceeeeeeccc
Confidence 499999999999999999999999999999999999 999999999999999999999999999999999999764
No 70
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.60 E-value=2e-15 Score=133.07 Aligned_cols=73 Identities=29% Similarity=0.384 Sum_probs=70.9
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-e-CCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI-Y-QGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi-~-~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
|+|+||+++|+++.++|++++||.+||++|+...| +|+++|||+ | +|+.|+|+++|++|+|++|++|+++++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG---VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC---CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 89999999999999999999999999999999999 999999999 9 8999999999999999999999999973
No 71
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.59 E-value=2.5e-15 Score=137.00 Aligned_cols=77 Identities=39% Similarity=0.594 Sum_probs=74.1
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~~ 81 (390)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+.+|++|+|+++++|||+++.+...
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g---Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC---CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 99999999999999999999999999999999999 999999999999999999999999999999999999877643
No 72
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.59 E-value=3.9e-15 Score=118.56 Aligned_cols=70 Identities=27% Similarity=0.460 Sum_probs=65.9
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEe
Q 016387 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (390)
Q Consensus 4 I~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~ 76 (390)
+++++++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN---VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC---CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 456668999999999999999999999999999 9999999999999999999999999999999999874
No 73
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.7e-15 Score=123.43 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=69.1
Q ss_pred EEEEEE-eCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 2 MKIFVK-TLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 2 MkI~Vk-tl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
|.|+|+ +..++.+.++++++.||.+||++|+...+ +|++.|+|||+||+|+|+.+|++|||++|.+|||+++...
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~---iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG---IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT---CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC---CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 566776 55688999999999999999999999999 9999999999999999999999999999999999998643
No 74
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.57 E-value=8.6e-15 Score=121.17 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=68.6
Q ss_pred EEEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhcc-CCCCEEEEEEec
Q 016387 2 MKIFVKTLKG--TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKV-AENSFVVIMLTK 77 (390)
Q Consensus 2 MkI~Vktl~g--~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI-~~~s~I~v~v~k 77 (390)
|+|+|++..+ .++.|+|++++||.+||++|++++| +|++.|||+|+|+.|+|+++|.+||| ++|++||+++..
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G---ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG---FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC---CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 8999999875 6899999999999999999999999 99999999999999999999999999 599999999853
No 75
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.56 E-value=2.4e-16 Score=134.99 Aligned_cols=76 Identities=39% Similarity=0.606 Sum_probs=0.0
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
|+|+||+++|+++.|+|++++||.+||.+|+...| +|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++.+..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987764
No 76
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=4.4e-15 Score=119.28 Aligned_cols=70 Identities=21% Similarity=0.272 Sum_probs=64.1
Q ss_pred CEEEEEEeCCCcEE--EE-EeCCCCCHHHHHHHHHHH-hCCCCCCCCCeEEEeC--CeecCCCCchhhhccCCCCEEEE
Q 016387 1 MMKIFVKTLKGTSF--DV-EVKPEDTVFDVKMKIETV-QGSDVYPAAQQMLIYQ--GKVLKDDTTLEENKVAENSFVVI 73 (390)
Q Consensus 1 mMkI~Vktl~g~~~--~i-eV~~~~TV~dLK~~I~~~-~g~~~ip~~~QkLi~~--GkiL~D~~tL~d~gI~~~s~I~v 73 (390)
||+|+||+++|+.+ .| +|++++||.+||++|++. .| +++++|||+|. ||+|+|+++|++|+|+++++|||
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~---i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ---WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS---SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC---CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 69999999998775 58 999999999999999995 67 99999999976 99999999999999999999765
No 77
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.55 E-value=1.9e-14 Score=120.89 Aligned_cols=77 Identities=27% Similarity=0.433 Sum_probs=70.9
Q ss_pred EEEEEEeC----------CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEE
Q 016387 2 MKIFVKTL----------KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFV 71 (390)
Q Consensus 2 MkI~Vktl----------~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I 71 (390)
|+|+|+.. +|+++.|+|++++||.+||.+|+...| +|+++|||+|+|+.|+|+.+|++|+|+++++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG---MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS---CCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 67788875 478899999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 016387 72 VIMLTKNKRP 81 (390)
Q Consensus 72 ~v~v~k~~~~ 81 (390)
||+++.+...
T Consensus 103 ~lv~rl~GGk 112 (115)
T 1we7_A 103 HLALKERSGP 112 (115)
T ss_dssp EEEECCCSCC
T ss_pred EEEEEcCCCC
Confidence 9999987643
No 78
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.54 E-value=2.3e-14 Score=124.51 Aligned_cols=75 Identities=41% Similarity=0.656 Sum_probs=72.3
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
|+|+||+++|+.+.++|++++||.+||++|+.+.| +|+++|+|+|+|+.|+|+++|++|||+++++|||+++.+.
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 79
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.54 E-value=2e-14 Score=124.90 Aligned_cols=73 Identities=42% Similarity=0.677 Sum_probs=70.8
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
|+|+||+++|+.+.++|++++||.+||++|+..+| +|+++|+|+|+|+.|+|+.+|++|||+++++|+|+.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999864
No 80
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=129.86 Aligned_cols=75 Identities=41% Similarity=0.656 Sum_probs=69.7
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
|.|+||+++|+++.++|++++||.+||++|+.+.| +|+++|+|+|+|+.|+|+++|.+|+|++|++|||+++.+.
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhC---CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 81
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.53 E-value=1.1e-15 Score=134.86 Aligned_cols=77 Identities=39% Similarity=0.591 Sum_probs=0.0
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~~ 81 (390)
|+|+||+++|+++.|+|++++||.+||.+|+...| +|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++.+...
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877654
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.6e-14 Score=116.02 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=65.6
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY--QGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~--~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
|.++++++.|+++.|+|++++||.+||.+|++++| +|+++|||+| .|+ |+|+.+|++|+|+.|++|||++..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg---Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ---IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC---CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC---CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 66777779999999999999999999999999999 9999999996 565 999999999999999999987743
No 83
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.48 E-value=7.8e-14 Score=135.75 Aligned_cols=75 Identities=41% Similarity=0.655 Sum_probs=70.3
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecC
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~ 78 (390)
+|+|+||+++|+++.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|+|++|.+
T Consensus 233 ~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G---Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 489999999999999999999999999999999999 999999999999999999999999999999999998764
No 84
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.46 E-value=2.5e-13 Score=116.10 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcCC-CC
Q 016387 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMH-EF 388 (390)
Q Consensus 348 ~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~~-d~ 388 (390)
+.|++|++|||+|+.|++||.+|++|++.|++|||++.. |.
T Consensus 80 ~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~~d~ 121 (126)
T 2lbc_A 80 EIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEE 121 (126)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCcc
Confidence 459999999999999999999999999999999999987 54
No 85
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.43 E-value=1.6e-13 Score=109.71 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=64.9
Q ss_pred EEEEEEe--CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-------CCeecCCCCchhhhccCCCCEEE
Q 016387 2 MKIFVKT--LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY-------QGKVLKDDTTLEENKVAENSFVV 72 (390)
Q Consensus 2 MkI~Vkt--l~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~-------~GkiL~D~~tL~d~gI~~~s~I~ 72 (390)
++|.|.. .+.+.+++.+++++||.+||.+|+.++| +|+++|||+| .|+.|+|+++|++|||++|++||
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G---ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ih 79 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA---TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIH 79 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC---CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC---CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEE
Confidence 4556543 4566788999999999999999999999 9999999997 48999999999999999999999
Q ss_pred EEEecC
Q 016387 73 IMLTKN 78 (390)
Q Consensus 73 v~v~k~ 78 (390)
|+-+.|
T Consensus 80 lvd~~P 85 (86)
T 4b6w_A 80 VVDLQP 85 (86)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 997653
No 86
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.42 E-value=2.5e-13 Score=112.76 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=65.7
Q ss_pred EEEEEEeCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-----------e----cCCCCchhhhcc
Q 016387 2 MKIFVKTLKGTSFDVEVK-PEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGK-----------V----LKDDTTLEENKV 65 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~-~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~Gk-----------i----L~D~~tL~d~gI 65 (390)
|+|+||+.+|+. .|+|+ +++||.+||++|+.+++ +|++.|+|+|.|+ . ++|+++|++|||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g---ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ---IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC---CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC---cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 899999999965 79999 99999999999999999 9999999999988 3 588899999999
Q ss_pred CCCCEEEEEEe
Q 016387 66 AENSFVVIMLT 76 (390)
Q Consensus 66 ~~~s~I~v~v~ 76 (390)
++|++|||+..
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998865
No 87
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.42 E-value=6.3e-13 Score=108.19 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=63.0
Q ss_pred EEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--Ce---ec-CCCCchhhhccCCCCEEEE
Q 016387 2 MKIFVKTLKGT--SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ--GK---VL-KDDTTLEENKVAENSFVVI 73 (390)
Q Consensus 2 MkI~Vktl~g~--~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~--Gk---iL-~D~~tL~d~gI~~~s~I~v 73 (390)
++|+|++..++ .++++|++++||.+||++|+.++| +|+++|||+|. |+ .| +|+++|++|+|++|++|+|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G---iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG---GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC---SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC---cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 67888876654 788999999999999999999999 99999999997 55 34 8999999999999999998
Q ss_pred E
Q 016387 74 M 74 (390)
Q Consensus 74 ~ 74 (390)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 7
No 88
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.38 E-value=1.3e-12 Score=106.80 Aligned_cols=72 Identities=17% Similarity=0.052 Sum_probs=63.4
Q ss_pred EEEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCchhhhccCCCCEEE
Q 016387 2 MKIFVKTLKG--TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---KV----LKDDTTLEENKVAENSFVV 72 (390)
Q Consensus 2 MkI~Vktl~g--~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~G---ki----L~D~~tL~d~gI~~~s~I~ 72 (390)
++|.|++... +.++++|++++||.+||++|+.++| +|+++|||+|.| +. ++|+++|++|+|++|++|+
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G---ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ih 91 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG---TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLH 91 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC---CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC---cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEE
Confidence 6778876444 4789999999999999999999999 999999999988 33 4889999999999999999
Q ss_pred EEEe
Q 016387 73 IMLT 76 (390)
Q Consensus 73 v~v~ 76 (390)
|+-.
T Consensus 92 lvd~ 95 (97)
T 2kj6_A 92 IIDL 95 (97)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9864
No 89
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.38 E-value=1e-12 Score=106.52 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=64.5
Q ss_pred EEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCchhhhccCCCCEEEE
Q 016387 2 MKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---KV----LKDDTTLEENKVAENSFVVI 73 (390)
Q Consensus 2 MkI~Vktl~g~-~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~G---ki----L~D~~tL~d~gI~~~s~I~v 73 (390)
|+|+|+..... .++++|++++||.+||.+|+.++| +|+++|||+|.| +. |+|+++|++|||+++++|||
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g---ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG---SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC---SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC---CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 78888876553 688999999999999999999999 999999999986 54 58999999999999999998
Q ss_pred EEec
Q 016387 74 MLTK 77 (390)
Q Consensus 74 ~v~k 77 (390)
+-..
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 8643
No 90
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.37 E-value=5.2e-14 Score=127.88 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=0.4
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~~ 81 (390)
|+|+||+++|+++.|+|++++||.+||.+|+...| +|+++|+|||+|++|+|+.+|+ ++++|||+++.+...
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG---IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG---FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---cChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 89999999999999999999999999999999999 9999999999999999999998 889999999876543
No 91
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.34 E-value=2.1e-12 Score=99.99 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=42.9
Q ss_pred CcchHHHHHHHHHccCCCC-CHHHHHHHHHHHhCChHHHHHHHHhCCCCc
Q 016387 156 GNNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204 (390)
Q Consensus 156 g~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNpdrAveyL~~GIP~~ 204 (390)
...|++.|++|++|| | +|+.+++||++++||++||||||++|||+.
T Consensus 26 e~~ye~qi~qL~eMG---F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 26 EGRYQQELEELKALG---FANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp TTTSHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 357899999999999 9 899999999999999999999999998864
No 92
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.33 E-value=1.4e-12 Score=103.80 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=63.3
Q ss_pred EEEEEEeCCCcEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--CeecC---CCCchhhhccCCCCEEEEEE
Q 016387 2 MKIFVKTLKGTSFDVE-VKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ--GKVLK---DDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 2 MkI~Vktl~g~~~~ie-V~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~--GkiL~---D~~tL~d~gI~~~s~I~v~v 75 (390)
|+|+||+.+|+. .++ |++++||.+||.+|+++.| +++++|+|+|+ +|.|. |+++|++|||++|++|||..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g---i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG---IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC---CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC---CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 789999999954 577 9999999999999999999 99999999987 48874 67899999999999998875
Q ss_pred e
Q 016387 76 T 76 (390)
Q Consensus 76 ~ 76 (390)
.
T Consensus 77 ~ 77 (86)
T 2kzr_A 77 D 77 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.31 E-value=2e-12 Score=90.00 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=38.2
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhCC
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~GI 201 (390)
.++.|++|++|| |+|++|++||++++||+++|++||++||
T Consensus 4 ~e~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 4 KSLAVEELSGMG---FTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHTTT---SCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 378999999999 9999999999999999999999999986
No 94
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.31 E-value=2.5e-12 Score=99.45 Aligned_cols=44 Identities=39% Similarity=0.385 Sum_probs=40.9
Q ss_pred CcchHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhCCC
Q 016387 156 GNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (390)
Q Consensus 156 g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~GIP 202 (390)
...+++.|++||+|| |+|++|++|||+++||+|||||||++|+.
T Consensus 26 ~~~~ee~I~~L~eMG---F~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 26 VAASEEQIQKLVAMG---FDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp SCCCHHHHHHHHTTT---CCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CcccHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 356799999999999 99999999999999999999999999954
No 95
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.29 E-value=9e-12 Score=105.73 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=64.9
Q ss_pred EEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCchhhhccCCCCEEEE
Q 016387 2 MKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---KV----LKDDTTLEENKVAENSFVVI 73 (390)
Q Consensus 2 MkI~Vktl~g~-~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~G---ki----L~D~~tL~d~gI~~~s~I~v 73 (390)
|+|+|+...+. .++++|++++||.+||.+|+..+| +|+++|||+|.| +. ++|+++|.+|||++|++|||
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G---ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG---TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC---CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC---CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 78889876553 688999999999999999999999 999999999977 43 48899999999999999999
Q ss_pred EEec
Q 016387 74 MLTK 77 (390)
Q Consensus 74 ~v~k 77 (390)
+...
T Consensus 84 vd~~ 87 (122)
T 1t0y_A 84 VDVT 87 (122)
T ss_dssp EECT
T ss_pred EeCC
Confidence 9754
No 96
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.28 E-value=3.9e-12 Score=89.88 Aligned_cols=41 Identities=34% Similarity=0.489 Sum_probs=38.3
Q ss_pred cchHHHHHHHHHccCCCC-CHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 157 NNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 157 ~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
..|+..|++|++|| | +|+.+++||++++||++||||||++|
T Consensus 5 ~~~~~~i~~L~~MG---F~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 35789999999999 9 78899999999999999999999987
No 97
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=1.1e-11 Score=100.56 Aligned_cols=76 Identities=11% Similarity=0.194 Sum_probs=72.8
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
|+|+||+.+|+.+.+.|.+++++..||++++++.| ++++.+||+|.|+.|.++.|+++|++.++++|+|+++.+..
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 98
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.27 E-value=4.1e-12 Score=124.68 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=66.4
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI---YQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi---~~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
|+|+|| ++|++|.|+|++++||.+||++|++++| +|+++|||| |+||.|+|+.+|++|||++|++|+||.+.
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg---Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ---VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 789999 6899999999999999999999999999 999999999 89999999999999999999999999643
No 99
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.24 E-value=7.7e-12 Score=91.00 Aligned_cols=43 Identities=23% Similarity=0.351 Sum_probs=40.8
Q ss_pred cchHHHHHHHHHccCCCC-CHHHHHHHHHHHhCChHHHHHHHHhCCC
Q 016387 157 NNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSGIP 202 (390)
Q Consensus 157 ~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNpdrAveyL~~GIP 202 (390)
..|++.|++|++|| | +|+.|++||++++||++||||||++|++
T Consensus 9 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMG---FINREANLQALIATGGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 46899999999999 9 9999999999999999999999999965
No 100
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.22 E-value=6.2e-11 Score=100.05 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcC
Q 016387 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385 (390)
Q Consensus 345 ee~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~ 385 (390)
+....|.+|++|||++.++.+|+..|++|.+.|++|||..-
T Consensus 75 ~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 75 EFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 35567999999999999999999999999999999999753
No 101
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.22 E-value=1.1e-11 Score=97.86 Aligned_cols=44 Identities=30% Similarity=0.378 Sum_probs=41.0
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHh--C-CCCcc
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS--G-IPEQA 205 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~--G-IP~~~ 205 (390)
.++.|++||+|| |+|++|++|||+++||++||+|||++ | ||+.+
T Consensus 29 ~ee~I~~Lv~MG---F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~~~ 75 (83)
T 1veg_A 29 SQESINQLVYMG---FDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPDL 75 (83)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCTTS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCchhh
Confidence 488999999999 99999999999999999999999999 7 77654
No 102
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.22 E-value=5.3e-11 Score=91.69 Aligned_cols=71 Identities=11% Similarity=0.207 Sum_probs=68.4
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v 75 (390)
|+|+|++.+|+.+.+.|..++++..|++.++++.| +++..+||+|.|+.|.++.|.++|++.+|++|+|++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT---CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999 899999999999999999999999999999999873
No 103
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.20 E-value=6.7e-11 Score=95.45 Aligned_cols=76 Identities=11% Similarity=0.194 Sum_probs=72.3
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
|+|+||+.+|+.+.+.|.+++++..||+.++++.| +++..+||+|.|+.|.++.|.++|++.+|++|+|++.....
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT---CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 78999999999999999999999999999999999 89999999999999999999999999999999999987653
No 104
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.20 E-value=2.2e-11 Score=88.26 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=39.2
Q ss_pred cchHHHHHHHHHccCCCC-CHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 157 NNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 157 ~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
..|+..|++|++|| | +|+.|++||++++||++||||||++|
T Consensus 10 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 10 VRFQQQLEQLSAMG---FLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 56899999999999 9 99999999999999999999999986
No 105
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.18 E-value=2.3e-11 Score=84.61 Aligned_cols=38 Identities=37% Similarity=0.542 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhc
Q 016387 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384 (390)
Q Consensus 347 ~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~ 384 (390)
.++|++|++|||+|+.|++||.+|++|++.|++|||++
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 37899999999999999999999999999999999986
No 106
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.18 E-value=2.4e-11 Score=91.50 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=39.2
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhCCCC
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~GIP~ 203 (390)
.++.|++|++|| |+|++|++|||+++||++||++||+++..+
T Consensus 9 ~~~~I~~L~~MG---F~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEMG---FSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTTT---CCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 478999999999 999999999999999999999999999543
No 107
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.18 E-value=1.6e-10 Score=90.73 Aligned_cols=70 Identities=9% Similarity=0.240 Sum_probs=67.5
Q ss_pred EEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEE
Q 016387 2 MKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 2 MkI~Vktl~g~-~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~ 74 (390)
|+|+|++.+|+ .+.+.|..++++..|++.++++.| ++++.+||+|.|+.|.++.|.++|++.+|++|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG---LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT---CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 89999999996 899999999999999999999999 89999999999999999999999999999999986
No 108
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.16 E-value=3.4e-11 Score=91.22 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=41.4
Q ss_pred cchHHHHHHHHHccCCCC-CHHHHHHHHHHHhCChHHHHHHHHhCCCCc
Q 016387 157 NNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSGIPEQ 204 (390)
Q Consensus 157 ~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNpdrAveyL~~GIP~~ 204 (390)
..|+..|.+|++|| | +|+.+++|||+++||++||||||++++++.
T Consensus 17 ~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 17 VRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 46889999999999 9 788889999999999999999999998863
No 109
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.16 E-value=2.7e-11 Score=89.58 Aligned_cols=41 Identities=34% Similarity=0.489 Sum_probs=39.1
Q ss_pred cchHHHHHHHHHccCCCC-CHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 157 NNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 157 ~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
..|++.|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 15 ~~~~~qi~~L~~MG---F~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 56899999999999 9 79999999999999999999999998
No 110
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.15 E-value=1.5e-10 Score=93.74 Aligned_cols=74 Identities=11% Similarity=0.208 Sum_probs=70.2
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~ 78 (390)
|+|+|++.+|+.+.+.|..++++..|+..++++.| ++++.+||+|.|+.|.++.|+++|++.++++|+|+++.+
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC---CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 78999999999999999999999999999999999 899999999999999999999999999999999998764
No 111
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.14 E-value=1.6e-10 Score=95.48 Aligned_cols=76 Identities=11% Similarity=0.199 Sum_probs=72.1
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
|+|+|++.+|+.+.+.|..++++..||..++++.| +++..+||+|.|+.|.++.|..+|++.++++|+|++.....
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT---CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 78999999999999999999999999999999999 89999999999999999999999999999999999876653
No 112
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4e-11 Score=90.25 Aligned_cols=42 Identities=40% Similarity=0.722 Sum_probs=40.0
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhCCCC
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~GIP~ 203 (390)
.++.|++|++|| |+|++|++|||+++||++||+|||+.++++
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 9 PEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 588999999999 999999999999999999999999999775
No 113
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.08 E-value=2.9e-10 Score=94.82 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=71.5
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
|+|+|++.+|+.+.+.|..++++..||..++++.| +++..+||+|.|+.|.++.|.++|++.++++|+|++....
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g---i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG---ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT---CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999987654
No 114
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.08 E-value=9.3e-11 Score=88.21 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 016387 346 EREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEF 388 (390)
Q Consensus 346 e~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~~d~ 388 (390)
+.++|++|++|||+|+.|++||.+|++|++.|++|||++..+.
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 3567999999999999999999999999999999999986553
No 115
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.07 E-value=1.4e-10 Score=89.84 Aligned_cols=41 Identities=20% Similarity=0.463 Sum_probs=38.5
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhCCC
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~GIP 202 (390)
.++.|++|++|| |+|++|++|||+++||++||||||+++..
T Consensus 29 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 29 DQSSVDTLLSFG---FAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 478999999999 99999999999999999999999999843
No 116
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.06 E-value=6.7e-11 Score=89.27 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=40.9
Q ss_pred CcchHHHHHHHHHccCCCCCHHHHHHHHHHHhC-ChHHHHHHHHhCCCC
Q 016387 156 GNNLEGAIQQILDMGGGTWDRDTVVRALRAAYN-NPERAVEYLYSGIPE 203 (390)
Q Consensus 156 g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafn-NpdrAveyL~~GIP~ 203 (390)
|...+..|++|++|| |+|+.|++||++++| |+++|++||+.++++
T Consensus 6 ~~~~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 6 SGSSPSLLEPLLAMG---FPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp CCCSCSSHHHHHHTS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 344577899999999 999999999999999 999999999999875
No 117
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.06 E-value=1.4e-10 Score=79.10 Aligned_cols=39 Identities=31% Similarity=0.464 Sum_probs=36.2
Q ss_pred cchHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHH
Q 016387 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY 198 (390)
Q Consensus 157 ~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~ 198 (390)
+++++.|++|++|| |+|++|++||+++.||+++|++||+
T Consensus 2 ~~~~~~i~~L~~mG---f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMG---FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 35788999999999 9999999999999999999999995
No 118
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.05 E-value=4.9e-10 Score=92.82 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=69.4
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~ 78 (390)
|+|+|++ +|+.+.+.|..++++..||+.++++.| +++..+||+|.|+.|.++.|.++|++.++++|+|+++..
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g---i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC---CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 7899999 999999999999999999999999999 899999999999999999999999999999999998764
No 119
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.04 E-value=5.1e-10 Score=90.83 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=63.5
Q ss_pred CEEEEEEe---CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC------ee-c-CCCCchhhhccCCCC
Q 016387 1 MMKIFVKT---LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG------KV-L-KDDTTLEENKVAENS 69 (390)
Q Consensus 1 mMkI~Vkt---l~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~G------ki-L-~D~~tL~d~gI~~~s 69 (390)
|++|+|++ .+|+.+.+.+..++||.+||.+|+..+| +|+..|||+|.+ .+ | +|..+|.+|+|.+|+
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g---ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK---VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT---CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 36788875 4677899999999999999999999999 999999999863 22 5 567899999999999
Q ss_pred EEEEEEec
Q 016387 70 FVVIMLTK 77 (390)
Q Consensus 70 ~I~v~v~k 77 (390)
+|||....
T Consensus 86 ~I~V~d~~ 93 (97)
T 1wjn_A 86 CLLVRWSG 93 (97)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99998754
No 120
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.03 E-value=3.2e-10 Score=82.38 Aligned_cols=44 Identities=32% Similarity=0.462 Sum_probs=40.0
Q ss_pred CCHHHHHH--HHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhhcC
Q 016387 342 VTPEEREA--IERLEAMGF-DRAIVLEVFFACNKNEELAANYLLDHM 385 (390)
Q Consensus 342 ~t~ee~~a--i~rL~~lGF-~~~~~iqAy~ac~kne~~Aan~L~~~~ 385 (390)
.+||+++. |++|++||| +|+.|++||.+|++|++.|++|||++.
T Consensus 5 ~~pe~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 5 SMPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp CCTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred CChhhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35677665 999999999 999999999999999999999999875
No 121
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.6e-10 Score=88.46 Aligned_cols=43 Identities=26% Similarity=0.391 Sum_probs=40.0
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHhC-ChHHHHHHHHhCCCCc
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYN-NPERAVEYLYSGIPEQ 204 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafn-NpdrAveyL~~GIP~~ 204 (390)
.++.|++||+|| |+|++|++|||+.+| |+++|+|||++++++.
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 9 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 478999999999 999999999999997 7999999999998764
No 122
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.01 E-value=3.1e-10 Score=85.63 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhhcCCCCC
Q 016387 348 EAIERLEAMGFDRAIVLEVFFACNK-NEELAANYLLDHMHEFE 389 (390)
Q Consensus 348 ~ai~rL~~lGF~~~~~iqAy~ac~k-ne~~Aan~L~~~~~d~~ 389 (390)
..|++|++|||+++.|++||.+|++ |++.|++|||++..|.|
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 5699999999999999999999997 99999999999987765
No 123
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.01 E-value=2e-10 Score=86.64 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=37.7
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHhC-ChHHHHHHHHhCCC
Q 016387 160 EGAIQQILDMGGGTWDRDTVVRALRAAYN-NPERAVEYLYSGIP 202 (390)
Q Consensus 160 e~~I~~i~~MG~~~f~r~qv~~ALrAafn-NpdrAveyL~~GIP 202 (390)
+..|++|++|| |+|++|++|||++.| |+++|+|||++++-
T Consensus 20 e~~i~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 20 GSALDVLLSMG---FPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 57899999999 999999999999998 99999999999854
No 124
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.01 E-value=4.2e-10 Score=79.37 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=37.8
Q ss_pred CHHHHHH--HHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhhc
Q 016387 343 TPEEREA--IERLEAMGF-DRAIVLEVFFACNKNEELAANYLLDH 384 (390)
Q Consensus 343 t~ee~~a--i~rL~~lGF-~~~~~iqAy~ac~kne~~Aan~L~~~ 384 (390)
.||+++. |++|++||| +|+.|++|+.+|++|++.|++|||++
T Consensus 2 ~p~~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 2 DPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp CHHHHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred CHhHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 4677655 999999999 79999999999999999999999974
No 125
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.6e-10 Score=80.76 Aligned_cols=38 Identities=34% Similarity=0.581 Sum_probs=35.6
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
.++.|++|++|| |+|++|++|||++ ||+++|+|||++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~~-~n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMG---FTREHAMEALLNT-STMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHS-CSHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHc-CCHHHHHHHHHcC
Confidence 478999999999 9999999999999 6999999999864
No 126
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.00 E-value=3.8e-10 Score=83.07 Aligned_cols=48 Identities=27% Similarity=0.435 Sum_probs=45.4
Q ss_pred ccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 016387 340 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387 (390)
Q Consensus 340 ~~~t~ee~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~~d 387 (390)
..|++-|.++|+.|++|||++++++.|+-+|++|+|.|++|||+|++-
T Consensus 13 ~~ls~se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 13 QMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HTCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred HhhCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 568999999999999999999999999999999999999999999753
No 127
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.00 E-value=2.9e-10 Score=87.79 Aligned_cols=48 Identities=27% Similarity=0.358 Sum_probs=43.3
Q ss_pred ccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 016387 340 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387 (390)
Q Consensus 340 ~~~t~ee~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~~d 387 (390)
.+.+++..++|++|++|||+|+.|++||.+|++|++.|++|||++...
T Consensus 23 ~~~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 23 QGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CCCSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred ccCCcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 456777788899999999999999999999999999999999997543
No 128
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.00 E-value=2.3e-10 Score=86.32 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=38.7
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHh-CChHHHHHHHHhCCCCc
Q 016387 160 EGAIQQILDMGGGTWDRDTVVRALRAAY-NNPERAVEYLYSGIPEQ 204 (390)
Q Consensus 160 e~~I~~i~~MG~~~f~r~qv~~ALrAaf-nNpdrAveyL~~GIP~~ 204 (390)
++.|++||+|| |+|++|++|||+++ +|+++|++||++++++.
T Consensus 10 ~~~v~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 10 LTALESLIEMG---FPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCHHHHHHTTT---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 56899999999 99999999999995 89999999999997753
No 129
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.99 E-value=3.5e-10 Score=81.85 Aligned_cols=43 Identities=35% Similarity=0.533 Sum_probs=38.1
Q ss_pred CHHHH--HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhhcC
Q 016387 343 TPEER--EAIERLEAMGF-DRAIVLEVFFACNKNEELAANYLLDHM 385 (390)
Q Consensus 343 t~ee~--~ai~rL~~lGF-~~~~~iqAy~ac~kne~~Aan~L~~~~ 385 (390)
+|+++ ..|++|++||| +|+.|++||.+|++|++.|++|||+++
T Consensus 7 ~p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 7 NPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp STTTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred CchhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 34444 56999999999 999999999999999999999999874
No 130
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.99 E-value=4.6e-10 Score=76.46 Aligned_cols=39 Identities=33% Similarity=0.489 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHh
Q 016387 344 PEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 382 (390)
Q Consensus 344 ~ee~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~ 382 (390)
|+..+.|++|++|||+++.+++||.+|++|++.|++|||
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 455678999999999999999999999999999999997
No 131
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.99 E-value=5.5e-10 Score=88.84 Aligned_cols=43 Identities=28% Similarity=0.357 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcCCCCC
Q 016387 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 389 (390)
Q Consensus 347 ~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~~d~~ 389 (390)
.++|++|++|||+|+.|++||.+|++|++.|++|||++..|.|
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D 64 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVD 64 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCcc
Confidence 5669999999999999999999999999999999999988876
No 132
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.98 E-value=5.3e-10 Score=79.92 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcC
Q 016387 343 TPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385 (390)
Q Consensus 343 t~ee~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~ 385 (390)
.++..+.|++|++|||+|+.|+.||.+|++|.+.|++|||++.
T Consensus 5 ~~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~gi 47 (49)
T 1ify_A 5 GSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGI 47 (49)
T ss_dssp SHHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHCC
T ss_pred CccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 3556678999999999999999999999999999999999863
No 133
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.97 E-value=5.8e-10 Score=84.16 Aligned_cols=42 Identities=29% Similarity=0.440 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHh-CCCHHHHHHHHhhcCCCCC
Q 016387 348 EAIERLEAMGFDRAIVLEVFFAC-NKNEELAANYLLDHMHEFE 389 (390)
Q Consensus 348 ~ai~rL~~lGF~~~~~iqAy~ac-~kne~~Aan~L~~~~~d~~ 389 (390)
..|++|++|||+|..|++||++| ++|++.|++|||++..|.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d 53 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPD 53 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcc
Confidence 46999999999999999999999 7999999999999987654
No 134
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.95 E-value=6.2e-10 Score=81.94 Aligned_cols=38 Identities=24% Similarity=0.599 Sum_probs=36.6
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 160 EGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 160 e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
++.|..|++|| |.++|+++||++..||+|||+|||++-
T Consensus 20 ~e~V~~LvsMG---Fs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 20 RQCVETVVNMG---YSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 67899999999 999999999999999999999999976
No 135
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=4.9e-10 Score=88.78 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcCCCCC
Q 016387 346 EREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 389 (390)
Q Consensus 346 e~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~~d~~ 389 (390)
+.+.|++|++|||+++.|++||.+|++|++.|+||||++..|.+
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~d 72 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPT 72 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCST
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcc
Confidence 34679999999999999999999999999999999999876643
No 136
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=5.9e-10 Score=86.49 Aligned_cols=44 Identities=23% Similarity=0.420 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhhcCCCCC
Q 016387 346 EREAIERLEAMGFDRAIVLEVFFACNK-NEELAANYLLDHMHEFE 389 (390)
Q Consensus 346 e~~ai~rL~~lGF~~~~~iqAy~ac~k-ne~~Aan~L~~~~~d~~ 389 (390)
+.+.|++|++|||+|+.|++||++|++ |+|.|++|||++..|.+
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d 53 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPD 53 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 345799999999999999999999995 89999999999987654
No 137
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.94 E-value=1.2e-09 Score=82.64 Aligned_cols=50 Identities=26% Similarity=0.258 Sum_probs=43.9
Q ss_pred cccCCHHHHHH--HHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 016387 339 SIQVTPEEREA--IERLEAMGF-DRAIVLEVFFACNKNEELAANYLLDHMHEF 388 (390)
Q Consensus 339 ~~~~t~ee~~a--i~rL~~lGF-~~~~~iqAy~ac~kne~~Aan~L~~~~~d~ 388 (390)
.....||+++. |++|++||| +|+.+++|+.+|++|++.|++|||++..+.
T Consensus 10 ~~~~~pe~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 10 HSLQAPEVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp CSSCCHHHHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred CCCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 34557888776 999999999 899999999999999999999999987653
No 138
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.92 E-value=8e-10 Score=85.52 Aligned_cols=45 Identities=13% Similarity=0.292 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 016387 344 PEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEF 388 (390)
Q Consensus 344 ~ee~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~~d~ 388 (390)
+.+.+.|++|++|||+|+.|++||.+|++|++.|++|||++..|.
T Consensus 27 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~ 71 (73)
T 1wiv_A 27 DIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPS 71 (73)
T ss_dssp SSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 345567999999999999999999999999999999999997764
No 139
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.92 E-value=1.1e-09 Score=82.60 Aligned_cols=41 Identities=32% Similarity=0.410 Sum_probs=37.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhhcCCCCC
Q 016387 349 AIERLEAMGFDRAIVLEVFFACNK-NEELAANYLLDHMHEFE 389 (390)
Q Consensus 349 ai~rL~~lGF~~~~~iqAy~ac~k-ne~~Aan~L~~~~~d~~ 389 (390)
.|++|++|||+|+.|++|+++|++ |++.|+||||++..|.+
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d 53 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPS 53 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 599999999999999999999975 99999999999987643
No 140
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.91 E-value=1.4e-09 Score=77.41 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhc
Q 016387 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384 (390)
Q Consensus 348 ~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~ 384 (390)
+.|++|++|||+|+.||+|+..|++|+|+|+|+|++-
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 5799999999999999999999999999999999985
No 141
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.1e-09 Score=86.76 Aligned_cols=42 Identities=24% Similarity=0.398 Sum_probs=39.6
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhCCCC
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~GIP~ 203 (390)
.++.|++||+|| |+|++|++|||+++||+++|++||++++.+
T Consensus 29 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 29 DEAALRQLTEMG---FPENRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 578999999999 999999999999999999999999999664
No 142
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.91 E-value=9.8e-10 Score=87.28 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=39.3
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHh-CChHHHHHHHHhCCCC
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAY-NNPERAVEYLYSGIPE 203 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAaf-nNpdrAveyL~~GIP~ 203 (390)
.+.+|++||+|| |+|++|++|||+++ +|+++|++||++++++
T Consensus 29 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 29 NEEIVAQLVSMG---FSQLHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 478999999999 99999999999998 4999999999999775
No 143
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=4.7e-10 Score=84.38 Aligned_cols=42 Identities=24% Similarity=0.534 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 016387 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEF 388 (390)
Q Consensus 347 ~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~~d~ 388 (390)
.+.|++|++|||+|+.+++||.+|++|++.|++|||++..|.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 456999999999999999999999999999999999986554
No 144
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.89 E-value=1.8e-09 Score=78.62 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=37.2
Q ss_pred chHHHHHHHHHccCCCC-CHHHHHHHHHHHhCChHHHHHHHHhCC
Q 016387 158 NLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSGI 201 (390)
Q Consensus 158 ~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNpdrAveyL~~GI 201 (390)
.|++.|++|++|| | +++.+++||+++.+|.+||||||+++.
T Consensus 8 ~~~~~l~~L~~MG---F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 8 HFQVQLEQLRSMG---FLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp SSHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 5789999999999 9 556689999999999999999999884
No 145
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.86 E-value=2.3e-09 Score=79.16 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=39.6
Q ss_pred cCCHHHHHH--HHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhhcC
Q 016387 341 QVTPEEREA--IERLEAMGF-DRAIVLEVFFACNKNEELAANYLLDHM 385 (390)
Q Consensus 341 ~~t~ee~~a--i~rL~~lGF-~~~~~iqAy~ac~kne~~Aan~L~~~~ 385 (390)
...+|+++. |++|++||| +|+.|++||.+|++|++.|++|||++.
T Consensus 10 ~~~pe~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 10 ILDPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp GGSHHHHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred CCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 335677554 999999999 799999999999999999999999874
No 146
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.5e-09 Score=76.87 Aligned_cols=38 Identities=32% Similarity=0.576 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcC
Q 016387 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385 (390)
Q Consensus 347 ~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~ 385 (390)
.+.|++|++|||+++.+++||.+|+ |+|.|++|||+|+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 3569999999999999999999996 9999999999874
No 147
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.84 E-value=2.8e-09 Score=76.27 Aligned_cols=38 Identities=26% Similarity=0.380 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcC
Q 016387 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385 (390)
Q Consensus 348 ~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~ 385 (390)
..|++|++|||+|+.||+|+..|++|+|+|+|+|++.-
T Consensus 11 ~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 11 SEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34999999999999999999999999999999999863
No 148
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.84 E-value=3.3e-09 Score=87.74 Aligned_cols=43 Identities=30% Similarity=0.481 Sum_probs=39.7
Q ss_pred cchHHHHHHHHHccCCCC-CHHHHHHHHHHHhCChHHHHHHHHhCCC
Q 016387 157 NNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSGIP 202 (390)
Q Consensus 157 ~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNpdrAveyL~~GIP 202 (390)
..+++.|++|++|| | +|+.+++||+++++|++||||||++|.+
T Consensus 64 ~~~~~qL~qL~eMG---F~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 64 SQWQPQLQQLRDMG---IQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp CTTHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred cchHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 35789999999999 9 7899999999999999999999999954
No 149
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.82 E-value=3.7e-09 Score=90.11 Aligned_cols=41 Identities=37% Similarity=0.601 Sum_probs=39.6
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhCCC
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~GIP 202 (390)
.+..|++|++|| |+|++|++|||+++||++||++||++|++
T Consensus 78 ~e~~v~~L~~MG---F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSMG---FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHHT---SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 588999999999 99999999999999999999999999987
No 150
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.80 E-value=4e-09 Score=83.73 Aligned_cols=44 Identities=30% Similarity=0.449 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHh-CCCHHHHHHHHhhcCCCCC
Q 016387 346 EREAIERLEAMGFDRAIVLEVFFAC-NKNEELAANYLLDHMHEFE 389 (390)
Q Consensus 346 e~~ai~rL~~lGF~~~~~iqAy~ac-~kne~~Aan~L~~~~~d~~ 389 (390)
+..+|++|++|||+|..|++||++| ++|++.|+||||+|..|.+
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d 73 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPD 73 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCST
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccc
Confidence 4567999999999999999997776 5899999999999987643
No 151
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.79 E-value=5.7e-09 Score=82.36 Aligned_cols=41 Identities=32% Similarity=0.396 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 016387 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387 (390)
Q Consensus 347 ~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~~d 387 (390)
.+.|++|++|||+|+.|++||.+|++|++.|++|||+|.++
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 45699999999999999999999999999999999998764
No 152
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.76 E-value=1e-08 Score=74.66 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 016387 347 REAIERLEAMGF-DRAIVLEVFFACNKNEELAANYLLDHMHE 387 (390)
Q Consensus 347 ~~ai~rL~~lGF-~~~~~iqAy~ac~kne~~Aan~L~~~~~d 387 (390)
...|++|++||| +++.+++||.+|++|++.|++|||++...
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 345999999999 77789999999999999999999998654
No 153
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.75 E-value=1.1e-08 Score=79.07 Aligned_cols=46 Identities=28% Similarity=0.397 Sum_probs=39.4
Q ss_pred CHHHH--HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 016387 343 TPEER--EAIERLEAMGF-DRAIVLEVFFACNKNEELAANYLLDHMHEF 388 (390)
Q Consensus 343 t~ee~--~ai~rL~~lGF-~~~~~iqAy~ac~kne~~Aan~L~~~~~d~ 388 (390)
.+|++ ..|++|++||| +|+.|++||.+|++|++.|++|||++....
T Consensus 24 ~pe~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 24 FTEGRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp GTTTTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred CchHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 34443 34999999999 899999999999999999999999986543
No 154
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.73 E-value=9.8e-09 Score=81.61 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=36.9
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 160 EGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 160 e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
++.|++|++|| |+|++|++||++.++|+++|++||+..
T Consensus 22 ~~~I~qL~~MG---F~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMG---FPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 78999999999 999999999999999999999999987
No 155
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.71 E-value=6.5e-08 Score=81.05 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=69.2
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
|+|+|++.+|+.+.+.|..++++..|++..+++.| ++...+||+|.|+.|.++.|..++++.++++|.|++..
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G---l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC---CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 68899998999999999999999999999999999 99999999999999999999999999999999999753
No 156
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.69 E-value=3.7e-09 Score=74.83 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=38.5
Q ss_pred chHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhCC
Q 016387 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201 (390)
Q Consensus 158 ~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~GI 201 (390)
+.+++|++|++|| |+|.+|++||.+..+|.++|++||+++.
T Consensus 3 ~e~eaI~rL~~mG---F~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 3 QEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp CCHHHHTTTTTTT---CCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred chHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 4578999999999 9999999999999999999999999874
No 157
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.64 E-value=2.9e-08 Score=71.08 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhc
Q 016387 347 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDH 384 (390)
Q Consensus 347 ~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~ 384 (390)
...|.+|++|||+|+.|++|+..|+.|+|+|.|+|++-
T Consensus 8 e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 8 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34699999999999999999999999999999999984
No 158
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.64 E-value=3.1e-08 Score=70.47 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=35.6
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHh
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~ 199 (390)
.+..|+.||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 11 ~~~~Ia~Lm~mG---Fsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGEG---YAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 367999999999 99999999999999999999999973
No 159
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.59 E-value=5.5e-08 Score=69.56 Aligned_cols=38 Identities=29% Similarity=0.400 Sum_probs=35.5
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHh
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~ 199 (390)
.+..|+.||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 9 ~e~~I~~L~~lG---F~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 9 LSSEIERLMSQG---YSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp SHHHHHHHHHHT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 467799999999 99999999999999999999999974
No 160
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.55 E-value=7.9e-08 Score=66.39 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcC
Q 016387 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHM 385 (390)
Q Consensus 348 ~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~ 385 (390)
.+|.+|++|||+++.|++|+.-|+.|+|+|.|.|++.-
T Consensus 6 ~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~ 43 (46)
T 2oo9_A 6 SEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFA 43 (46)
T ss_dssp HHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 46999999999999999999999999999999999863
No 161
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.54 E-value=1.1e-07 Score=65.72 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=38.7
Q ss_pred CcchHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHh
Q 016387 156 GNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (390)
Q Consensus 156 g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~ 199 (390)
|+.+|..|..||+|| |+|+.|++||-.|-||.+-|-+.|+.
T Consensus 1 ~~~~e~~I~~L~s~G---f~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 1 GSQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp CCHHHHHHHHHHHTT---BCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 567899999999999 99999999999999999999999973
No 162
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.54 E-value=4.7e-08 Score=76.81 Aligned_cols=69 Identities=12% Similarity=0.181 Sum_probs=58.2
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee---c--CCCCchhhhccCCCCEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKV---L--KDDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~Gki---L--~D~~tL~d~gI~~~s~I~v~ 74 (390)
|.|.||+.+| .+.|+|++++||.+||++|.+.++ ++.+.|.|.++-.. | .++.+|+++||+.|+.|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~---i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG---FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC---CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC---CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 7899998877 788999999999999999999999 88888777654433 3 46789999999999999874
No 163
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.53 E-value=5.3e-08 Score=70.44 Aligned_cols=47 Identities=26% Similarity=0.235 Sum_probs=42.0
Q ss_pred CCHHHHHH--HHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 016387 342 VTPEEREA--IERLEAMGF-DRAIVLEVFFACNKNEELAANYLLDHMHEF 388 (390)
Q Consensus 342 ~t~ee~~a--i~rL~~lGF-~~~~~iqAy~ac~kne~~Aan~L~~~~~d~ 388 (390)
+.|||+++ |++|.+||| |++.+++|+..|++|++.|++.|++....+
T Consensus 3 ~~~ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 3 SGSSGQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp CSSCTTHHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred CCHHHhhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence 46778887 999999999 999999999999999999999999876544
No 164
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.47 E-value=5.5e-07 Score=82.41 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=70.9
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~~ 81 (390)
|+|+|+ .+|+.+.+.|..++++..||+..+++.| ++..++||+|.|+.|.++.|..++++.+|++|+|+.......
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G---i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS---SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC---CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 678887 5899999999999999999999999999 999999999999999999999999999999999999876644
No 165
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.45 E-value=1.2e-07 Score=79.77 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=37.7
Q ss_pred chHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 158 ~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
++.+.|.+|++|| |++++|+.||+...||.|||||||+++
T Consensus 75 ~~~~~v~~L~eMG---F~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 75 EFLQLMSKFKEMG---FELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3567899999999 999999999999999999999999987
No 166
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.42 E-value=2.3e-07 Score=76.69 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 016387 347 REAIERLEAMGF-DRAIVLEVFFACNKNEELAANYLLDHMH 386 (390)
Q Consensus 347 ~~ai~rL~~lGF-~~~~~iqAy~ac~kne~~Aan~L~~~~~ 386 (390)
...|++|++||| +|+.+|+||.+|++|++.|++|||+++.
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 346999999999 8899999999999999999999998753
No 167
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.41 E-value=4.4e-07 Score=82.04 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=69.8
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
|+|+|+ .+|+.+.+.|..++++..|++..+++.| +++..+||+|.|+.|.++.|..++++.++++|.|++.....
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG---L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT---CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC---CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 678887 4889999999999999999999999999 89999999999999999999999999999999999877654
No 168
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.39 E-value=2.8e-07 Score=66.04 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=36.7
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
.|..|..||+|| |+|+.|++||+.+-||.+-|-.+|+.=
T Consensus 7 ~e~~Ia~L~smG---fsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 7 LSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHTTT---CCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred ChHHHHHHHHcC---CCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 578999999999 999999999999999999999999854
No 169
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.38 E-value=2.8e-07 Score=84.47 Aligned_cols=74 Identities=26% Similarity=0.297 Sum_probs=56.4
Q ss_pred CHHHHHHHHHhHHHHHHHhcCCCCCCCCCccccccCCCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHH
Q 016387 299 NPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAA 378 (390)
Q Consensus 299 NPql~~~I~~n~e~fl~~l~~~~~~~~g~~~~~~~~~~~~~~~~t~ee~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aa 378 (390)
|++..++...|.+.|.+...+-... ... .....++-.+.|++|++|||+|+.|++|+..|++|++.|+
T Consensus 128 n~~aa~~~~~~~~~f~~~a~~~~~~--------~a~----~~~~~~~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~ 195 (201)
T 3k9o_A 128 DAVVANQYKQNPEMFKQTARLWAHV--------YAG----APVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETAT 195 (201)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHH--------HHC----CCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHH
T ss_pred cHHHHHHHHHCHHHHHHHHHHHHHH--------hcc----cccccchhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHH
Confidence 7788888888888888776432110 000 1112445567799999999999999999999999999999
Q ss_pred HHHhhc
Q 016387 379 NYLLDH 384 (390)
Q Consensus 379 n~L~~~ 384 (390)
++||++
T Consensus 196 e~L~~~ 201 (201)
T 3k9o_A 196 ELLLSN 201 (201)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 999985
No 170
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.21 E-value=9.1e-07 Score=81.03 Aligned_cols=43 Identities=33% Similarity=0.461 Sum_probs=40.1
Q ss_pred ccCcchHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHh
Q 016387 154 VAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (390)
Q Consensus 154 ~~g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~ 199 (390)
..+..+++.|++|++|| |+|++|+.||+...+|.++|+|||++
T Consensus 158 ~~~~~~eekV~~l~~MG---f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 158 VSSPEYTKKIENLCAMG---FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CCCHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34668899999999999 99999999999999999999999985
No 171
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.19 E-value=1.1e-05 Score=62.47 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=66.2
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEeCCeecCCCCchhhhccCCCCEEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAA-QQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~-~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v 75 (390)
+.+.+|+.+...+.+.|.++.||.+|-+..+.+.| ++++ .++|.|.|..|..+.++.+|++.+++.|-||+
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~---I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK---ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT---CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC---CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 56778888888899999999999999999999999 8999 99999999999999999999999999999885
No 172
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=98.14 E-value=2.1e-06 Score=81.40 Aligned_cols=75 Identities=25% Similarity=0.283 Sum_probs=58.8
Q ss_pred hCHHHHHHHHHhHHHHHHHhcCCCCCCCCCccccccCCCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHH
Q 016387 298 QNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELA 377 (390)
Q Consensus 298 ~NPql~~~I~~n~e~fl~~l~~~~~~~~g~~~~~~~~~~~~~~~~t~ee~~ai~rL~~lGF~~~~~iqAy~ac~kne~~A 377 (390)
-|++..++...|.+.|.+...+-... ... .....++-.+.|++|++|||+|+.+++|+..|++|++.|
T Consensus 179 ln~eaa~l~~~d~~~f~~~ar~~t~~--------yA~----~~~~~~~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A 246 (253)
T 3e46_A 179 QDAVVANQYKQNPEMFKQTARLWAHV--------YAG----APVSSPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETA 246 (253)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHH--------HHC----CSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHH
T ss_pred hhHHHHHHHHHCHHHHHHHHHHHHHH--------hcc----cccCcchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 48899999999999998886532210 000 112245566789999999999999999999999999999
Q ss_pred HHHHhhc
Q 016387 378 ANYLLDH 384 (390)
Q Consensus 378 an~L~~~ 384 (390)
.++||++
T Consensus 247 ~e~L~~~ 253 (253)
T 3e46_A 247 TELLLSN 253 (253)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999985
No 173
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.12 E-value=3.3e-06 Score=69.01 Aligned_cols=44 Identities=30% Similarity=0.566 Sum_probs=41.3
Q ss_pred cchHHHHHHHHHc-cCCCCCHHHHHHHHHHHhCChHHHHHHHHhCCCC
Q 016387 157 NNLEGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE 203 (390)
Q Consensus 157 ~~~e~~I~~i~~M-G~~~f~r~qv~~ALrAafnNpdrAveyL~~GIP~ 203 (390)
.++++.|+.||+| | |++++|+.||.-+.++.++|++||+.|.|+
T Consensus 37 ~d~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 37 ADFEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred ccHHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 3568999999999 9 999999999999999999999999999874
No 174
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.09 E-value=5.4e-06 Score=67.76 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 016387 345 EEREAIERLEAM-GFDRAIVLEVFFACNKNEELAANYLLDHMHE 387 (390)
Q Consensus 345 ee~~ai~rL~~l-GF~~~~~iqAy~ac~kne~~Aan~L~~~~~d 387 (390)
+-.+.|++|++| ||+++.|+.||..|++|++.|+++||+...|
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 445669999999 9999999999999999999999999988643
No 175
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.06 E-value=2.3e-05 Score=63.62 Aligned_cols=70 Identities=9% Similarity=0.219 Sum_probs=64.7
Q ss_pred EEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEE
Q 016387 2 MKIFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 2 MkI~Vktl~g~-~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~ 74 (390)
++|+|+..+|+ .+.+.|..+.++..|.+..+++.| +++...||+|.|..|..+.|..++++.++++|.|+
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g---~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG---LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT---CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 67888888885 788999999999999999999999 88999999999999999999999999999999886
No 176
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.06 E-value=5.2e-07 Score=82.64 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=0.4
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
|+|+| +.+|+.+.+.|..++++..|++..+++.| +++..+|++|.|+.|.++.|.+++++++|++|.|+......
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG---Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp ------------------------------------------------------------------------------C
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC---CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 67888 67888899999999999999999999999 89999999999999999999999999999999999876553
No 177
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.99 E-value=5.4e-06 Score=59.93 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=39.0
Q ss_pred CcchHHHHHHHHHccCCCC-CHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 156 GNNLEGAIQQILDMGGGTW-DRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 156 g~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
-+.|...+.+|.+|| | +++..++|||...+|.++||+.|+.+
T Consensus 6 ee~~a~~L~~L~eMG---F~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 6 SGQTAALMAHLFEMG---FCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp CTTHHHHHHHHHHHT---CCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 356788999999999 9 99999999999999999999999976
No 178
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.95 E-value=3.8e-06 Score=83.69 Aligned_cols=44 Identities=25% Similarity=0.377 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 016387 345 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEF 388 (390)
Q Consensus 345 ee~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~~d~ 388 (390)
+..++|++|++|||+|+.|+.|+.+|++|.+.|++|||++..|.
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~~ 210 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 210 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTTC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 34567999999999999999999999999999999999986553
No 179
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.84 E-value=1.1e-05 Score=71.79 Aligned_cols=41 Identities=29% Similarity=0.487 Sum_probs=38.5
Q ss_pred cchHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 157 ~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
++.+++|++|++|| |+|+.|++|+.++.+|.+.|++||+++
T Consensus 128 pee~eaI~rL~~mG---F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 128 PEDDQAISRLCELG---FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45678999999999 999999999999999999999999976
No 180
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.79 E-value=7.4e-05 Score=60.23 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=52.9
Q ss_pred EEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec--CCCCchhhhcc-CCCCEEEEEEe
Q 016387 4 IFVKTL-KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVL--KDDTTLEENKV-AENSFVVIMLT 76 (390)
Q Consensus 4 I~Vktl-~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL--~D~~tL~d~gI-~~~s~I~v~v~ 76 (390)
|.|=.+ .+..+.+.|.+++||..||++|++++| ++++.|+|+|.||.| ..++.-..|-- .+.+-|+++-+
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTg---Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhC---CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 344333 466788999999999999999999999 999999999999876 44556666643 34455555543
No 181
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.79 E-value=0.00015 Score=58.29 Aligned_cols=72 Identities=10% Similarity=0.178 Sum_probs=67.1
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
+.|+|+ .+|..+.+.|..+.....|.+..+.+.| +.+...|++|.|..+.++.|-.++++.++++|-+++.+
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~g---v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLG---VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHT---SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcC---CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 678888 4788899999999999999999999999 88999999999999999999999999999999999865
No 182
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.79 E-value=4.2e-05 Score=60.02 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=60.9
Q ss_pred EEEEEEe--CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCeEEEeCCeecCCCCchhhhccCCCCEEEE
Q 016387 2 MKIFVKT--LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPA---AQQMLIYQGKVLKDDTTLEENKVAENSFVVI 73 (390)
Q Consensus 2 MkI~Vkt--l~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~---~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v 73 (390)
++|+|.. ..++.|.+.++...||+.|+..+.+.++.+ .+. ...|+.-+|..|.++..|.+|+|++|+.|.+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~-~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVS-MPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCC-SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCC-cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 6778775 678999999999999999999999999844 222 2467888999999999999999999999876
No 183
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.75 E-value=6.8e-05 Score=68.94 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=68.9
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR 80 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~ 80 (390)
+.|+|+. +|+.+.+.|..++++..||+..+++.| ++..++||+|.|+.+.++.+-.++.+.++++|.++......
T Consensus 22 i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g---~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred EEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC---CChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence 5788887 778888999999999999999999999 99999999999999999999999999999999999876553
No 184
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.59 E-value=9.1e-05 Score=53.05 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=35.0
Q ss_pred chHHHHHHHHHccCCCCCHHHHHHHHHHHhC-ChHHHHHHHH
Q 016387 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYN-NPERAVEYLY 198 (390)
Q Consensus 158 ~~e~~I~~i~~MG~~~f~r~qv~~ALrAafn-NpdrAveyL~ 198 (390)
...++++.|++|| |+++-|++||+.+-| ..+-|+|||.
T Consensus 8 vn~qmlq~L~eMG---Fd~erae~Alk~Tg~~Gle~AmewL~ 46 (54)
T 2cos_A 8 VNRQMLQELVNAG---CDQEMAGRALKQTGSRSIEAALEYIS 46 (54)
T ss_dssp CCHHHHHHHHHHH---CCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4578999999999 999999999999877 7999999996
No 185
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.53 E-value=0.00017 Score=61.32 Aligned_cols=68 Identities=26% Similarity=0.291 Sum_probs=55.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-------------------------------------Ce
Q 016387 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAA-------------------------------------QQ 45 (390)
Q Consensus 3 kI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~-------------------------------------~Q 45 (390)
.|+|+.++|...++.|+.+.||.+++..|+.+.| ++.. ++
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig---I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT---CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC---CCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 4899999999999999999999999999999999 4422 34
Q ss_pred EEEe--CCeecCCCCchhhhccCCCCEEEE
Q 016387 46 MLIY--QGKVLKDDTTLEENKVAENSFVVI 73 (390)
Q Consensus 46 kLi~--~GkiL~D~~tL~d~gI~~~s~I~v 73 (390)
||-. .+.-|+++.+|.++||.++++|.+
T Consensus 90 kL~~dd~~~WLD~srtL~EQGI~e~~tllL 119 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRTLREQGVEEHETLLL 119 (128)
T ss_dssp SCCCSSSEEEECSSSCHHHHTCCTTSEEEE
T ss_pred HhcccCCCCcccCCCcHHHcCCCCCCEEEE
Confidence 4421 236678889999999999998644
No 186
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.49 E-value=0.00036 Score=55.64 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=69.1
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
|.|+|-..+++.+.|.|.++.|+.++-+..+.++| +.+++-.|.|++|.|+-+..+.-.||-+|..|.++.+.+.
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g---l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD---FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT---CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC---CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 58999999999999999999999999999999999 8888999999999999899999999999999999876543
No 187
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.49 E-value=1.5e-05 Score=78.76 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=0.0
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 79 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~ 79 (390)
+.|+|+. +|+.+.+.|..++++..|++..+++.| ++++.+|++|.|+.|.++.|.+++++++|++|.|+.....
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G---~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC---CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 5677776 677788999999999999999999999 8999999999999999999999999999999999986544
No 188
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.34 E-value=0.00087 Score=52.45 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=58.7
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC---CCCchhhhccCCCCEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVLK---DDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi--~~GkiL~---D~~tL~d~gI~~~s~I~v~ 74 (390)
.+|.||..+|+.+.-.+..++||.+|...|.. .+ +.....+|+ |-.|.|. .+++|.++|+.+..+|+|-
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG---FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT---CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC---CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 57899999999888889999999999999988 56 667888987 5678884 4689999999998888764
No 189
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.33 E-value=0.00046 Score=75.68 Aligned_cols=40 Identities=25% Similarity=0.541 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 016387 348 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHE 387 (390)
Q Consensus 348 ~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aan~L~~~~~d 387 (390)
+.|..|.+|||++.++++|+.+|++|.+.|++|||++..|
T Consensus 722 e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~ 761 (854)
T 3ihp_A 722 DCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDD 761 (854)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCccc
Confidence 3488899999999999999999999999999999998654
No 190
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.24 E-value=0.00025 Score=67.06 Aligned_cols=43 Identities=30% Similarity=0.422 Sum_probs=40.2
Q ss_pred ccCcchHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHh
Q 016387 154 VAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (390)
Q Consensus 154 ~~g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~ 199 (390)
+.+.+|++.|++|++|| |+|++|+.||+...+|.++|+|||+.
T Consensus 210 ~~~~~~~~~v~~l~~mg---f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 210 VSSPEYTKKIENLCAAG---FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp CCCHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 44668999999999999 99999999999999999999999985
No 191
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.22 E-value=4.8e-05 Score=75.98 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=0.0
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEecCCCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRP 81 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k~~~~ 81 (390)
+.|+|+. +|+...+.|..++++..||+..+++.| ++..+++++|.|+.|.++.|-+++++++|++|.|++......
T Consensus 31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g---~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 4567776 677778999999999999999999999 999999999999999999999999999999999998766543
No 192
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.20 E-value=0.0035 Score=51.62 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=59.8
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--C-CCchhhhccCCCCEEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVLK--D-DTTLEENKVAENSFVVIML 75 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi--~~GkiL~--D-~~tL~d~gI~~~s~I~v~v 75 (390)
.+|.||..+|+.+.-.+..++||.+|...|....+ .+.....|+ |-.|.|. | +++|+++|+.+..+|+|..
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG---NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT---TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC---CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 57999999999999999999999999999999877 556677776 6788886 3 6799999999877666554
No 193
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.71 E-value=0.0044 Score=52.24 Aligned_cols=70 Identities=17% Similarity=0.367 Sum_probs=59.2
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeec--CC-CCchhhhccCCCCEEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVL--KD-DTTLEENKVAENSFVVIML 75 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi--~~GkiL--~D-~~tL~d~gI~~~s~I~v~v 75 (390)
.+|.||..+|+.+.-.+..++||.+|...|... + ++....+|+ |-.|.| .| +++|.++|+.....|+|..
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~---~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H---CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 579999999999888999999999999999876 6 667788887 668988 34 6899999999888777653
No 194
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.60 E-value=0.017 Score=47.45 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=57.8
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC-C-CCchhhhccCCCCEEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVLK-D-DTTLEENKVAENSFVVIML 75 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi--~~GkiL~-D-~~tL~d~gI~~~s~I~v~v 75 (390)
.+|.||..+|+.+.-.+..++||.+|...|... + +.....+|+ |-.|.|. | +++|+++|+....+|+|-.
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G---YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T---CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 579999999998888899999999999999965 5 456778886 6688886 3 6899999999887776643
No 195
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.54 E-value=0.0033 Score=46.24 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=35.1
Q ss_pred HHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 016387 348 EAIERLEAM--GFDRAIVLEVFFACNKNEELAANYLLDHMHEF 388 (390)
Q Consensus 348 ~ai~rL~~l--GF~~~~~iqAy~ac~kne~~Aan~L~~~~~d~ 388 (390)
+.|+.|++| .++++.+..+|.+|++|.+.|+|.||+-.++.
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 458899999 44899999999999999999999999865543
No 196
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=96.36 E-value=0.00064 Score=62.82 Aligned_cols=73 Identities=22% Similarity=0.327 Sum_probs=16.2
Q ss_pred CHHHHHHHHHhHHHHHHHhcCCCCCCCCCccccccCCCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHH
Q 016387 299 NPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAA 378 (390)
Q Consensus 299 NPql~~~I~~n~e~fl~~l~~~~~~~~g~~~~~~~~~~~~~~~~t~ee~~ai~rL~~lGF~~~~~iqAy~ac~kne~~Aa 378 (390)
|++..++..+|.+.|.+...+-... .... .. ..+-.+.|++|++|||+++.++.|+..|++|++.|.
T Consensus 143 n~eaa~~~~~d~~~f~~~ar~~t~~--------ya~~----~~-~~~~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~ 209 (216)
T 2pwq_A 143 DAEVAKMYKENHALFVKTASVWTKT--------FATG----PK-EEPREVIIKKITEMGFSEDQAKNALIKANWNETLAL 209 (216)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHH--------HSCC----C--------------------------------------
T ss_pred cHHHHHHHHHCHHHHHHHHHHHHHH--------hcCC----Cc-ccchhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHH
Confidence 6777778888888887765432100 0000 00 012245699999999999999999999999999999
Q ss_pred HHHhhc
Q 016387 379 NYLLDH 384 (390)
Q Consensus 379 n~L~~~ 384 (390)
+.||+.
T Consensus 210 ~~l~~~ 215 (216)
T 2pwq_A 210 NTLLEN 215 (216)
T ss_dssp ------
T ss_pred HHHhcC
Confidence 999974
No 197
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.01 E-value=0.022 Score=48.02 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=54.3
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-CCchhhhccCCCCE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQGKVLKD-DTTLEENKVAENSF 70 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi--~~GkiL~D-~~tL~d~gI~~~s~ 70 (390)
.+|.||..+|+.+.-.+..++||.+|+..|...... +......|+ |-.|.|.| +++|.++|+....+
T Consensus 53 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~--~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 53 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA--MAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSG--GGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcC--CCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 468999999999988999999999999999886321 445677776 67899976 58999999987433
No 198
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.97 E-value=0.0052 Score=43.96 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhhcC
Q 016387 345 EEREAIERLEAMGFDRAIVLEVFFACNK-NEELAANYLLDHM 385 (390)
Q Consensus 345 ee~~ai~rL~~lGF~~~~~iqAy~ac~k-ne~~Aan~L~~~~ 385 (390)
+-+.-++.|.+||||++.|..|+-.++. ..+.|.+||+.-.
T Consensus 8 vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 8 VNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhc
Confidence 3345599999999999999999988764 8999999998643
No 199
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.91 E-value=0.0079 Score=44.17 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=37.4
Q ss_pred chHHHHHHHHHc--cCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 158 NLEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 158 ~~e~~I~~i~~M--G~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
..|+.|+.|.+| . ++++.|+..|++.-||.|+|++.|+.-
T Consensus 8 ~~ee~l~~L~emFP~---ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPN---MDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp SCHHHHHHHHHHCSS---SCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 358999999999 7 899999999999999999999999976
No 200
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.81 E-value=0.012 Score=44.29 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCC---ChHHHHHHHHHhCCCHHHHHHHHhhc
Q 016387 347 REAIERLEAMGF---DRAIVLEVFFACNKNEELAANYLLDH 384 (390)
Q Consensus 347 ~~ai~rL~~lGF---~~~~~iqAy~ac~kne~~Aan~L~~~ 384 (390)
..++++|++| | +++.+..+|.+|++|.+.|++.||+-
T Consensus 19 ~~~v~~L~~M-FP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 19 NQAMDDFKTM-FPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHHHHHHH-CSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4569999999 6 79999999999999999999999973
No 201
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=95.66 E-value=0.015 Score=41.03 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=36.1
Q ss_pred hHHHHHHHHHc--cCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 159 LEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 159 ~e~~I~~i~~M--G~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
-+..|+.|.+| . -++++|.++|+++.+|.|+|+..|+++
T Consensus 4 ~e~~v~~L~EMFP~---~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPA---ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSS---SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 47889999999 5 699999999999999999999999987
No 202
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=95.65 E-value=0.0019 Score=59.60 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=0.0
Q ss_pred chHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhCC
Q 016387 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201 (390)
Q Consensus 158 ~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~GI 201 (390)
.+++.|+++++|| |+|++|++||+..-.+.++|+|.|+.|+
T Consensus 176 ~~~~~v~~~~~mg---f~~~~~~~al~~~~~~~~~~~~~l~~~~ 216 (216)
T 2pwq_A 176 PREVIIKKITEMG---FSEDQAKNALIKANWNETLALNTLLENS 216 (216)
T ss_dssp --------------------------------------------
T ss_pred chhhHHHHHHHcC---CCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 4588999999999 9999999999999999999999999884
No 203
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.27 E-value=0.14 Score=40.08 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=60.1
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---CCeecCCCCchhhhccCCCCEEEEEEecC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY---QGKVLKDDTTLEENKVAENSFVVIMLTKN 78 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~---~GkiL~D~~tL~d~gI~~~s~I~v~v~k~ 78 (390)
+++.|.....+++.+.|++..++.+|--.|+++.. +.++.-.|.. .+..|+-+++|.||||++ ++.+=.++
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce---fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~ 84 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCE---FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR 84 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT---CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc---CChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence 57788888888889999999999999999999988 7788888864 567788899999999998 66665554
No 204
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.24 E-value=0.036 Score=41.67 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=39.2
Q ss_pred cCcchHHHHHHHHHc--cCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 155 AGNNLEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 155 ~g~~~e~~I~~i~~M--G~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
.+.+++++|+.|.+| - ++++-|+..|++.-+|.|+|++-|+.-
T Consensus 14 ~~~~~~~~v~~L~~MFP~---lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMFPN---MDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCSHHHHHHHHHHCSS---SCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 456789999999999 5 799999999999999999999999864
No 205
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.02 E-value=0.059 Score=40.89 Aligned_cols=49 Identities=16% Similarity=0.334 Sum_probs=43.5
Q ss_pred ccCcchHHHHHHHHHc--cCCCCCHHHHHHHHHHHhCChHHHHHHHHhC-CCCcc
Q 016387 154 VAGNNLEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG-IPEQA 205 (390)
Q Consensus 154 ~~g~~~e~~I~~i~~M--G~~~f~r~qv~~ALrAafnNpdrAveyL~~G-IP~~~ 205 (390)
+.+.+.+..|.+|.++ - |....|.++|+.-.+|+|+.|..|+.| +|.++
T Consensus 8 ~~~~~l~s~I~qV~DLfPd---LG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~L 59 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPD---LGEGFILACLEYYHYDPEQVINNILEERLAPTL 59 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCS---SCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTTT
T ss_pred CcHHHHHHHHHHHHHHccc---CCHHHHHHHHHHhCCCHHHHHHHHHccCCCHHH
Confidence 4677899999999998 5 779999999999778999999999999 77765
No 206
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=94.93 E-value=0.019 Score=52.76 Aligned_cols=74 Identities=12% Similarity=0.179 Sum_probs=46.9
Q ss_pred hCHHHHHHHHHhHHHHHHHhcCCC---CCCCCCccccccCCCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCH
Q 016387 298 QNPQLVRLIQEHQADFLRLINEPV---QGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNE 374 (390)
Q Consensus 298 ~NPql~~~I~~n~e~fl~~l~~~~---~~~~g~~~~~~~~~~~~~~~~t~ee~~ai~rL~~lGF~~~~~iqAy~ac~kne 374 (390)
.|++..++...|++.|.+...+-. ......... .. .....+-..+.+.|++|++|||+++.|++|+..|++|+
T Consensus 122 ln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~~~~~--~~--~~~~~~~g~~~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 122 QDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQK--GN--VEESDLYGIDHDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCSCCSS--CC--CSCSSCCCCSHHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred cCHHHHHHHHHCHHHHHHHHHHHHHHhccCCCcccc--cc--hhhhhhccccHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 367777777777887776643211 000000000 00 01123445567889999999999999999999999998
Q ss_pred H
Q 016387 375 E 375 (390)
Q Consensus 375 ~ 375 (390)
+
T Consensus 198 ~ 198 (215)
T 1tte_A 198 L 198 (215)
T ss_dssp C
T ss_pred c
Confidence 4
No 207
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.75 E-value=0.075 Score=39.83 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=42.1
Q ss_pred ccCCHHHHHHHHHHHHc-C-CChHHHHHHHHHhCCCHHHHHHHHhhcC
Q 016387 340 IQVTPEEREAIERLEAM-G-FDRAIVLEVFFACNKNEELAANYLLDHM 385 (390)
Q Consensus 340 ~~~t~ee~~ai~rL~~l-G-F~~~~~iqAy~ac~kne~~Aan~L~~~~ 385 (390)
..|+.+..+.|.+.+++ | -+...+++.+..|+||.+.|++..|++.
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred hhcChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 57899999999999997 8 5999999999999999999999999874
No 208
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.61 E-value=0.24 Score=36.94 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=46.4
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v 75 (390)
|+|+|..-. ....+++....||.+|.+++ + ++.....+..+|+++..+. -+++|+.|.++-
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~---~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----E---IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----T---CCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 888887433 24567788889999999876 5 5566777889999997665 578899988773
No 209
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=94.51 E-value=0.028 Score=61.65 Aligned_cols=41 Identities=39% Similarity=0.677 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 157 ~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
...++.|..|++|| |+++++++||++..||.+|||+||++.
T Consensus 718 ~~~~e~i~~l~~mG---f~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 718 PPPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp -CCHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 34578999999999 999999999999999999999999986
No 210
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.51 E-value=0.28 Score=40.41 Aligned_cols=64 Identities=23% Similarity=0.240 Sum_probs=45.7
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCeecCCC-------------CchhhhccCC
Q 016387 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYP------AAQQMLIY----QGKVLKDD-------------TTLEENKVAE 67 (390)
Q Consensus 11 g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip------~~~QkLi~----~GkiL~D~-------------~tL~d~gI~~ 67 (390)
+..+.+.|-..+||.++|+||-...-+. .| ++++.|-+ .|++|.|. .||..|+|.+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~-~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRG-QPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcC-CccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 3457778888999999999998765322 33 34556655 35777662 2689999999
Q ss_pred CCEEEEEE
Q 016387 68 NSFVVIML 75 (390)
Q Consensus 68 ~s~I~v~v 75 (390)
|.+|.++-
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99998764
No 211
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.37 E-value=0.11 Score=39.67 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=46.4
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~ 74 (390)
|+|+||........+++....||.+|-+ ..| ++++...+..||+++..+. +.+|+.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lg---l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVD---LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTC---CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcC---CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 7999997755556689999999998875 466 8888887888999987665 2347877765
No 212
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.17 E-value=0.11 Score=38.25 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=41.6
Q ss_pred ccCCHHHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhhcC
Q 016387 340 IQVTPEEREAIERLEAM-GFDRAIVLEVFFACNKNEELAANYLLDHM 385 (390)
Q Consensus 340 ~~~t~ee~~ai~rL~~l-GF~~~~~iqAy~ac~kne~~Aan~L~~~~ 385 (390)
..+++...+.|.+.+++ |-++..+++-+.+|+||.+.|++..|++.
T Consensus 9 ~~~s~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 9 SAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp CSSCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred hhcCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 46788888899999997 88999999999999999999999999874
No 213
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=93.85 E-value=0.092 Score=39.07 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=33.5
Q ss_pred HHHHHHHHHc-cCCCCCHHHHHHHHHHHhCChHHHHHHHH
Q 016387 160 EGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLY 198 (390)
Q Consensus 160 e~~I~~i~~M-G~~~f~r~qv~~ALrAafnNpdrAveyL~ 198 (390)
.+.|..|.++ | ....+|..||..+.+|.+.|++||-
T Consensus 10 ~~~Vk~LRe~TG---ag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 10 KELLMKLRRKTG---YSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp CHHHHHHHHHHC---CCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3689999997 8 9999999999999999999999996
No 214
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=93.72 E-value=0.11 Score=35.41 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=35.6
Q ss_pred HHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhhcC
Q 016387 346 EREAIERLEAM-GFDRAIVLEVFFACNKNEELAANYLLDHM 385 (390)
Q Consensus 346 e~~ai~rL~~l-GF~~~~~iqAy~ac~kne~~Aan~L~~~~ 385 (390)
..+.|.+.+++ |-++..+++-+.+|++|.+.|++..|+++
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45678998887 89999999999999999999999999874
No 215
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.67 E-value=0.31 Score=41.54 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=46.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CchhhhccCC
Q 016387 12 TSFDVEVKPEDTVFDVKMKIETVQGSDVYP------AAQQMLIY----QGK-VLKDD-------------TTLEENKVAE 67 (390)
Q Consensus 12 ~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip------~~~QkLi~----~Gk-iL~D~-------------~tL~d~gI~~ 67 (390)
..+.+.|-..|||.++|+||-+..-++ +| +++.-|-+ .|+ +|.|. .||..|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~-~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcC-CccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 357788889999999999998876543 43 33445544 344 47663 2799999999
Q ss_pred CCEEEEEEec
Q 016387 68 NSFVVIMLTK 77 (390)
Q Consensus 68 ~s~I~v~v~k 77 (390)
|.+|.++-+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999887654
No 216
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.52 E-value=0.34 Score=44.23 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=50.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEE--e-CC--eecCC-CCchhhhccCCCCEEEEEEecC
Q 016387 14 FDVEVKPEDTVFDVKMKIETVQGSDVYPAA-QQMLI--Y-QG--KVLKD-DTTLEENKVAENSFVVIMLTKN 78 (390)
Q Consensus 14 ~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~-~QkLi--~-~G--kiL~D-~~tL~d~gI~~~s~I~v~v~k~ 78 (390)
+++.++..+||.+|++++...++ ++.+ +.||- | .+ ..|.| +++|.+++|.++..|+|=++..
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~ 210 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFS---IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNE 210 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTT---CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred eEEEEcccchHHHHHHHHHHHhC---CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecC
Confidence 66788999999999999999999 8886 68883 4 22 45666 5799999999999998887753
No 217
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.22 E-value=0.52 Score=43.46 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=50.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEE-eC----CeecCC-CCchhhhccCCCCEEEEEEecC
Q 016387 14 FDVEVKPEDTVFDVKMKIETVQGSDVYPAA-QQMLI-YQ----GKVLKD-DTTLEENKVAENSFVVIMLTKN 78 (390)
Q Consensus 14 ~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~-~QkLi-~~----GkiL~D-~~tL~d~gI~~~s~I~v~v~k~ 78 (390)
+++.++..+||.+|+++++..++ ++.+ +.||- |. ...|.| +.+|.+++|.++..|.|=++.+
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN---IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT---CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred EEEEecccCcHHHHHHHHHHHhC---CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 55678999999999999999999 8887 68884 22 345666 5899999999999998887753
No 218
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=93.01 E-value=0.71 Score=36.57 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=48.5
Q ss_pred EEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCC--CCC------CCCCeEEEeCCeecCCCCchhhhccC
Q 016387 2 MKIFVKTLK------G-TSFDVEVKPEDTVFDVKMKIETVQGS--DVY------PAAQQMLIYQGKVLKDDTTLEENKVA 66 (390)
Q Consensus 2 MkI~Vktl~------g-~~~~ieV~~~~TV~dLK~~I~~~~g~--~~i------p~~~QkLi~~GkiL~D~~tL~d~gI~ 66 (390)
|+|+||.+. | ....+++....||.+|.+.+...... ..+ ......+..||+.... +.-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 889999874 3 46778888889999999999877420 000 0234567788988763 55688
Q ss_pred CCCEEEEE
Q 016387 67 ENSFVVIM 74 (390)
Q Consensus 67 ~~s~I~v~ 74 (390)
+|+.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998776
No 219
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=92.77 E-value=0.14 Score=36.10 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=34.5
Q ss_pred HHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 016387 347 REAIERLEAM--GFDRAIVLEVFFACNKNEELAANYLLDHMH 386 (390)
Q Consensus 347 ~~ai~rL~~l--GF~~~~~iqAy~ac~kne~~Aan~L~~~~~ 386 (390)
...++.|.+| .-++..+..+|.+|++|.+.|++.||+...
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 3568999999 347999999999999999999999998643
No 220
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=92.07 E-value=0.21 Score=37.09 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhhc
Q 016387 350 IERLEAM-GFDRAIVLEVFFACNKNEELAANYLLDH 384 (390)
Q Consensus 350 i~rL~~l-GF~~~~~iqAy~ac~kne~~Aan~L~~~ 384 (390)
|+.|.+. |.....|.+|+..|++|.+.|..||..+
T Consensus 13 Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 13 LMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7888876 9999999999999999999999999864
No 221
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=91.15 E-value=1.4 Score=37.09 Aligned_cols=65 Identities=28% Similarity=0.303 Sum_probs=46.6
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe-C---Ce-ecCCC-------------CchhhhccC
Q 016387 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYP------AAQQMLIY-Q---GK-VLKDD-------------TTLEENKVA 66 (390)
Q Consensus 11 g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip------~~~QkLi~-~---Gk-iL~D~-------------~tL~d~gI~ 66 (390)
+..+.+.|-..|||.++|+||-...-+. +| ++++.|-| . |+ +|.|. .||..|+|.
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKN-VPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTT-SCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhcc-CCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4457778888999999999998775432 33 35666655 2 34 46652 268999999
Q ss_pred CCCEEEEEEe
Q 016387 67 ENSFVVIMLT 76 (390)
Q Consensus 67 ~~s~I~v~v~ 76 (390)
+|.+|.++.+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988754
No 222
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=90.99 E-value=1.2 Score=43.37 Aligned_cols=93 Identities=15% Similarity=0.239 Sum_probs=54.2
Q ss_pred HHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHhHHHHHHHhcCCCCCCCCCccccccCCCCccccCCHHHHHH-HHHH-
Q 016387 276 VLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREA-IERL- 353 (390)
Q Consensus 276 ~lrq~vq~NP~ll~~~l~~i~~~NPql~~~I~~n~e~fl~~l~~~~~~~~g~~~~~~~~~~~~~~~~t~ee~~a-i~rL- 353 (390)
.+..+|..+|.+|.--+.. |+.+ =.|++-|+..... ....-...|..+.++.+.... +.-|
T Consensus 94 ~V~kiL~k~P~lL~~s~e~-----------L~~~-l~fL~~lGl~~~~-----i~~ll~~~P~lL~~s~e~i~~~v~~L~ 156 (335)
T 4fp9_B 94 PVCVVLKKSPQLLKLPIMQ-----------MRKR-SSYLQKLGLGEGK-----LKRVLYCCPEIFTMRQQDINDTVRLLK 156 (335)
T ss_dssp HHHHHHHHCGGGGGSCHHH-----------HHHH-HHHHHHTTCTTTT-----HHHHHHHCGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhChhhccCCHHH-----------HHHH-HHHHHHcCCCHHH-----HHHHHHhCchhhccChHHHHHHHHHHH
Confidence 4667888999887522221 3333 2455555443211 111111223466778887655 5556
Q ss_pred HHcCCChHHHHHHHHHh-------CCCHHHHHHHHhhcC
Q 016387 354 EAMGFDRAIVLEVFFAC-------NKNEELAANYLLDHM 385 (390)
Q Consensus 354 ~~lGF~~~~~iqAy~ac-------~kne~~Aan~L~~~~ 385 (390)
..|||+++.+..++..| ..+..--.+||...+
T Consensus 157 ~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~M 195 (335)
T 4fp9_B 157 EKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRM 195 (335)
T ss_dssp HTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTT
T ss_pred HHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHh
Confidence 47999999999998877 334555566666554
No 223
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=90.77 E-value=0.51 Score=35.38 Aligned_cols=65 Identities=5% Similarity=0.180 Sum_probs=43.8
Q ss_pred EEEEEEeCCCcE-EEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCchhhhccCCCCEEEEE
Q 016387 2 MKIFVKTLKGTS-FDVEVKPEDTVFDVKMKIETVQGSDVYPA--AQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 2 MkI~Vktl~g~~-~~ieV~~~~TV~dLK~~I~~~~g~~~ip~--~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~ 74 (390)
|+|+||.+..-. ..+++ ...||.+|++.+....+ +.. ....+..||+.+.+ .+.-+++|+.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~---l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG---LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT---TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC---HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 568888764311 34666 56899999999986543 221 44566778887543 24468899999877
No 224
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=90.66 E-value=0.81 Score=44.74 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=55.5
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCC-CCCCCCeEEEe------CCeecCCCCchhhhccCCCCEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSD-VYPAAQQMLIY------QGKVLKDDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~-~ip~~~QkLi~------~GkiL~D~~tL~d~gI~~~s~I~v~ 74 (390)
+.++|... +.+.++.++++.||.++.++|.++.... ..++++--|.. +|+=|++.++|+.|++.+++.|...
T Consensus 4 ~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 4 LSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 45556544 6778899999999999999998886510 12456666765 4566888899999999999988765
Q ss_pred E
Q 016387 75 L 75 (390)
Q Consensus 75 v 75 (390)
.
T Consensus 83 ~ 83 (371)
T 3ivf_A 83 K 83 (371)
T ss_dssp E
T ss_pred C
Confidence 4
No 225
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=90.64 E-value=0.47 Score=33.12 Aligned_cols=39 Identities=31% Similarity=0.464 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHH--cCCChHHHHHHHHHhCCCHHHHHHHHhhc
Q 016387 344 PEEREAIERLEA--MGFDRAIVLEVFFACNKNEELAANYLLDH 384 (390)
Q Consensus 344 ~ee~~ai~rL~~--lGF~~~~~iqAy~ac~kne~~Aan~L~~~ 384 (390)
|||. |++-.. -|=+|+..|+-+..++-|+++|+|-||+.
T Consensus 9 Pe~l--i~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 9 PEEL--ISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp CHHH--HHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred cHHH--HHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 4443 555444 38999999999999999999999999998
No 226
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=90.44 E-value=0.11 Score=37.25 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhhc
Q 016387 345 EEREAIERLEAM--GFDRAIVLEVFFACNKNEELAANYLLDH 384 (390)
Q Consensus 345 ee~~ai~rL~~l--GF~~~~~iqAy~ac~kne~~Aan~L~~~ 384 (390)
|-.++|+.|++| .+|++.+.-++.++++|.+.|+|.||+-
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 445669999999 6799999999999999999999999863
No 227
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=90.10 E-value=2.1 Score=33.25 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=39.0
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG 51 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~G 51 (390)
|+|+|..- -++-|.|..+.+..+|+.+|.++.+ ++.+..+|.|+-
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~---l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLE---LRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTT---CCGGGCCEEECC
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhC---CCcceeEEEeeC
Confidence 56666643 6889999999999999999999999 888999999964
No 228
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=89.51 E-value=0.41 Score=36.23 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=25.1
Q ss_pred hHHhhCCHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHH
Q 016387 265 LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQ 307 (390)
Q Consensus 265 ~~~L~~~P~~~~lrq~vq~NP~ll~~~l~~i~~~NPql~~~I~ 307 (390)
+..++++|++.++-+-+++||..+..++ +||.+...|+
T Consensus 22 i~~im~DP~~~~~lq~~~~NP~~~~k~~-----~nP~v~~~i~ 59 (71)
T 2llw_A 22 VAAIMQDPVMQSILQQAQQNPAALQEHM-----KNPEVFKKIQ 59 (71)
T ss_dssp HHHHHTCTHHHHHHHHHHHCHHHHHHHH-----HSHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHCHHHHHHHH-----hCHHHHHHHH
Confidence 3446667777777777777777665533 3777777665
No 229
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=89.47 E-value=1.5 Score=36.43 Aligned_cols=64 Identities=31% Similarity=0.419 Sum_probs=44.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe-CC---e-ecCCC-------------CchhhhccCCC
Q 016387 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYP------AAQQMLIY-QG---K-VLKDD-------------TTLEENKVAEN 68 (390)
Q Consensus 13 ~~~ieV~~~~TV~dLK~~I~~~~g~~~ip------~~~QkLi~-~G---k-iL~D~-------------~tL~d~gI~~~ 68 (390)
.+.+.|-..+||..+|+||-...-+. .| .+++.|-+ .| + +|.|. .||..|+|.+|
T Consensus 28 ~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 28 EVPVKILNCDTITQVKEKILDAIFKN-VPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred ceEeeeecCCchHHHHHHHHHHHhcC-CCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 46777878999999999998765322 33 34555644 23 3 45541 26899999999
Q ss_pred CEEEEEEec
Q 016387 69 SFVVIMLTK 77 (390)
Q Consensus 69 s~I~v~v~k 77 (390)
.+|.++-+.
T Consensus 107 atl~l~~~~ 115 (117)
T 4e74_A 107 SVVALVSKQ 115 (117)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999887653
No 230
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=89.36 E-value=0.33 Score=34.40 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHccCCCCCHHH--HHHHHHHHhCChHHHHHHHH
Q 016387 157 NNLEGAIQQILDMGGGTWDRDT--VVRALRAAYNNPERAVEYLY 198 (390)
Q Consensus 157 ~~~e~~I~~i~~MG~~~f~r~q--v~~ALrAafnNpdrAveyL~ 198 (390)
+..+++|.+|++|| |+-+- ..+.|.+..+|..+|++.|-
T Consensus 8 ~rl~~al~qMl~MG---F~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 8 PRLIESLSQMLSMG---FSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHHHTTT---CCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred hHHHHHHHHHHHcC---CCccccHHHHHHHHccCCHHHHHHHhh
Confidence 34789999999999 96554 47999999999999999873
No 231
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=89.30 E-value=0.54 Score=38.75 Aligned_cols=69 Identities=13% Similarity=0.112 Sum_probs=43.3
Q ss_pred EEEEEEeCC------C--cEEEEEeCC---CCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-Ce------ecCCCC---ch
Q 016387 2 MKIFVKTLK------G--TSFDVEVKP---EDTVFDVKMKIETVQGSDVYPAAQQMLIYQ-GK------VLKDDT---TL 60 (390)
Q Consensus 2 MkI~Vktl~------g--~~~~ieV~~---~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~-Gk------iL~D~~---tL 60 (390)
|+|+|+... | +.+.++++. ..||.+|...|.+.+. ..+.+|+.. |+ +|-++. .|
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL-----KERPELFIQGDSVRPGILVLINDADWELL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC-----CSCHHHHCCSSSCCSSEEEEESSSBHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc-----chhHhhCccCCcccCCeEEEECCeeeecc
Confidence 999999864 3 356788873 3699999999988753 223333221 22 222332 22
Q ss_pred --hhhccCCCCEEEEEE
Q 016387 61 --EENKVAENSFVVIML 75 (390)
Q Consensus 61 --~d~gI~~~s~I~v~v 75 (390)
.++-+++|+.|.++-
T Consensus 87 ~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 87 GELDYQLQDQDSILFIS 103 (114)
T ss_dssp CTTTCBCCSSEEEEEEE
T ss_pred CCcCcCCCCCCEEEEeC
Confidence 346799999987764
No 232
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=88.87 E-value=0.29 Score=42.64 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=32.9
Q ss_pred chHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHH
Q 016387 158 NLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY 198 (390)
Q Consensus 158 ~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~ 198 (390)
.+...|.+|++.| -|+|++|+.||+...+|.++|+--|-
T Consensus 101 ~R~~K~~eL~s~G--~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 101 TRRRKVQELQSLG--FGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHHHHTT--CCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3455788899999 33999999999999999999997663
No 233
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=88.65 E-value=0.77 Score=36.44 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=28.0
Q ss_pred CEEEEEEeCC-------C-cEEEEEeC--CCCCHHHHHHHHHHHhC
Q 016387 1 MMKIFVKTLK-------G-TSFDVEVK--PEDTVFDVKMKIETVQG 36 (390)
Q Consensus 1 mMkI~Vktl~-------g-~~~~ieV~--~~~TV~dLK~~I~~~~g 36 (390)
||+|+||... | +..++++. ...||.+|+..+.++..
T Consensus 1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~ 46 (99)
T 2qjl_A 1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMI 46 (99)
T ss_dssp CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTC
T ss_pred CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCc
Confidence 7999998753 2 45667776 67899999999998864
No 234
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=88.64 E-value=2.7 Score=32.28 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=41.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCCeEEEeCCeecCCCCchhhhccCCCCEEEEE
Q 016387 12 TSFDVEVKPEDTVFDVKMKIETVQGSDVYP----------AAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 12 ~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip----------~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~ 74 (390)
+...+++....||.+|++.+...+.. +. .....+..||+.... +.-+++|+.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~--~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPA--LESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGG--GHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcH--HHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 56788888788999999999887531 10 012567779988865 4458889999877
No 235
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=88.24 E-value=0.75 Score=36.09 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=42.5
Q ss_pred EEEEEEeCCCcEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPE-DTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~-~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v 75 (390)
|+|+| +|+. +++... .||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++|+.|.++-
T Consensus 21 M~I~v---NGe~--~el~~~~~Tv~dLL~~L----~---~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 21 HMLQL---NGKD--VKWKKDTGTIQDLLASY----Q---LENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp -CEEE---TTEE--ECCSSSCCBHHHHHHHT----T---CTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred eEEEE---CCEE--EECCCCCCcHHHHHHHh----C---CCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 55555 3654 455665 8999998876 5 556677788999998643 33445689999998874
No 236
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=87.93 E-value=1.1 Score=34.95 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=38.9
Q ss_pred ccCCHHHHHH----HHHHHH-cC--CChHHHHHHHHHhCCCHHHHHHHHhhc
Q 016387 340 IQVTPEEREA----IERLEA-MG--FDRAIVLEVFFACNKNEELAANYLLDH 384 (390)
Q Consensus 340 ~~~t~ee~~a----i~rL~~-lG--F~~~~~iqAy~ac~kne~~Aan~L~~~ 384 (390)
.+|++.|+.. ++++.+ +| .++...++|-+.|+=|.+.|.||+|+.
T Consensus 24 ~~Ls~~d~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 24 HQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 4689988877 677776 47 699999999999999999999999964
No 237
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=86.82 E-value=1.7 Score=33.93 Aligned_cols=44 Identities=20% Similarity=0.082 Sum_probs=34.2
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCC
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI-YQG 51 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi-~~G 51 (390)
|||+|- .++..|-|.|..+.+..+||.||..+.. + +...|+ |++
T Consensus 13 ~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk---~--~~~~l~~ykd 57 (85)
T 1ip9_A 13 TKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRID---T--DNFKLQTKLF 57 (85)
T ss_dssp EEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHT---S--SCEEEEECCS
T ss_pred eEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhc---c--cceEEEEecC
Confidence 666665 3466899999999999999999999988 4 455554 444
No 238
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=86.74 E-value=1.9 Score=34.13 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=43.1
Q ss_pred CEEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-----C----Ce-------EEEeCCeecCCC
Q 016387 1 MMKIFVKTLK------G-TSFDVEVKPEDTVFDVKMKIETVQGSDVYPA-----A----QQ-------MLIYQGKVLKDD 57 (390)
Q Consensus 1 mMkI~Vktl~------g-~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~-----~----~Q-------kLi~~GkiL~D~ 57 (390)
||+|+|+... | +.+.++ ..||.+|.+.+...... +.. . .. .+..||+.....
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~--l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~ 77 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPA--LKYVIFEKGDEKSEILILCGSINILINGNNIRHL 77 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGG--GTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChh--HHHHHhcccccccceeccccccEEEECCEEcccc
Confidence 7899999874 3 344444 58999999999887420 111 1 23 566788766322
Q ss_pred CchhhhccCCCCEEEEE
Q 016387 58 TTLEENKVAENSFVVIM 74 (390)
Q Consensus 58 ~tL~d~gI~~~s~I~v~ 74 (390)
. -.+.-+++|+.|.++
T Consensus 78 ~-~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 78 E-GLETLLKDSDEIGIL 93 (99)
T ss_dssp T-STTSCCCTTEEEEEE
T ss_pred C-CCCCCCCCCCEEEEE
Confidence 1 123457899998776
No 239
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=86.66 E-value=1 Score=31.90 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHcCCChH--HHHHHHHHhCCCHHHHHHHHh
Q 016387 343 TPEEREAIERLEAMGFDRA--IVLEVFFACNKNEELAANYLL 382 (390)
Q Consensus 343 t~ee~~ai~rL~~lGF~~~--~~iqAy~ac~kne~~Aan~L~ 382 (390)
.|.=.++|.++.+|||+-+ ---+.+.++++|+..|.+-|-
T Consensus 7 D~rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 7 DPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp CHHHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred ChHHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 3444677999999999433 345899999999999998774
No 240
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=86.35 E-value=0.38 Score=36.56 Aligned_cols=39 Identities=26% Similarity=0.538 Sum_probs=27.7
Q ss_pred HHhhCCHHHH--HHHHHHHhCccchHHHHHHHhhhCH-HHHHHHHHh
Q 016387 266 DFLRNSPQFQ--VLRAMVQANPQLLQPMLQELGKQNP-QLVRLIQEH 309 (390)
Q Consensus 266 ~~L~~~P~~~--~lrq~vq~NP~ll~~~l~~i~~~NP-ql~~~I~~n 309 (390)
+.+++||++. -|.++-++||++++ +.++|| +|+++|++.
T Consensus 20 ~~vqqNP~lL~~lLqqL~~~NPqL~q-----~I~~n~e~Fl~ll~e~ 61 (72)
T 1pve_A 20 QIIQQNPSLLPALLQQIGRENPQLLQ-----QISQHQEHFIQMLNEP 61 (72)
T ss_dssp HHHTTCGGGHHHHHHHHHTTCHHHHH-----HHHTTHHHHHHHHHSC
T ss_pred HHHHHCHHHHHHHHHHHHhHCHHHHH-----HHHHCHHHHHHHHcCC
Confidence 4566799875 56778889998765 556675 488888643
No 241
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=85.61 E-value=0.83 Score=33.38 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=30.8
Q ss_pred hHHhhCCHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHH
Q 016387 265 LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQ 307 (390)
Q Consensus 265 ~~~L~~~P~~~~lrq~vq~NP~ll~~~l~~i~~~NPql~~~I~ 307 (390)
+..++++|+|.+.-+-+++||..++. -.+||.+.+.|+
T Consensus 14 ~~~~m~dP~~~~~lq~i~~NP~~~~~-----~~~dP~v~~~~~ 51 (62)
T 2lnm_A 14 VAMAFQNPRVQAALMECSENPMNIMK-----YQNDKEVMDVFN 51 (62)
T ss_dssp HHHHTTSHHHHHHHHHHTTCGGGHHH-----HTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHCHHHHHH-----HHhChHHHHHHH
Confidence 45667889999999999999998764 345999998886
No 242
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=85.45 E-value=0.89 Score=39.58 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHh
Q 016387 347 REAIERLEAMGF-DRAIVLEVFFACNKNEELAANYLL 382 (390)
Q Consensus 347 ~~ai~rL~~lGF-~~~~~iqAy~ac~kne~~Aan~L~ 382 (390)
+..++.|.++|| +++++++|+....+|++.|..-|=
T Consensus 103 ~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 103 RRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 445999999997 999999999999999999987763
No 243
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=84.71 E-value=2.6 Score=32.72 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=43.7
Q ss_pred EEEEEEeCC------CcEEEEEeCCCCCHHHHHHHHHHHhCC----------CCCCCCCeEEEeCCeecCCCCchhhhcc
Q 016387 2 MKIFVKTLK------GTSFDVEVKPEDTVFDVKMKIETVQGS----------DVYPAAQQMLIYQGKVLKDDTTLEENKV 65 (390)
Q Consensus 2 MkI~Vktl~------g~~~~ieV~~~~TV~dLK~~I~~~~g~----------~~ip~~~QkLi~~GkiL~D~~tL~d~gI 65 (390)
|+|+|+... |+...+++ ...||.+|++.+..++.. +.-......+..||+...+..-+ +.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 678888653 43334665 457999999999887531 00001135666788876542222 3468
Q ss_pred CCCCEEEEE
Q 016387 66 AENSFVVIM 74 (390)
Q Consensus 66 ~~~s~I~v~ 74 (390)
++|+.|.++
T Consensus 79 ~~gDeV~i~ 87 (93)
T 3dwg_C 79 ADGDSVTIL 87 (93)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999998877
No 244
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=84.58 E-value=2.2 Score=32.17 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=37.2
Q ss_pred cCCHHHHHH-HHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhhcC
Q 016387 341 QVTPEEREA-IERLEAM--GFDRAIVLEVFFACNKNEELAANYLLDHM 385 (390)
Q Consensus 341 ~~t~ee~~a-i~rL~~l--GF~~~~~iqAy~ac~kne~~Aan~L~~~~ 385 (390)
.++..++.. |.++++| -+...-+.+.+..++.|.|.++|.||++.
T Consensus 7 ~~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 7 GMCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp CCSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 345555554 9999998 46789999999999999999999999964
No 245
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=84.16 E-value=5 Score=37.49 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=54.3
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCeEEEe---CCe--ecCCCCchhhhccCCCCEEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPA-AQQMLIY---QGK--VLKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~-~~QkLi~---~Gk--iL~D~~tL~d~gI~~~s~I~v~v 75 (390)
|.|.|..++| ++.+.|+...|+.+|-..|....| +.. +-.-|.| +|. -|+.++.|.+.+++.+..+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIG---LREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcC---CCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 6889999988 688999999999999999999999 432 2334544 343 36777888887766666666666
Q ss_pred ecC
Q 016387 76 TKN 78 (390)
Q Consensus 76 ~k~ 78 (390)
|++
T Consensus 78 r~k 80 (294)
T 1ef1_A 78 RAK 80 (294)
T ss_dssp EES
T ss_pred EEE
Confidence 554
No 246
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=83.95 E-value=2.7 Score=32.75 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=50.4
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 16 ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
-.++-..++..||+.++.+.+ +.-+.-.+...+..|+++++|.+-+|+-...|.+.+--
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~---i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQ---CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHC---SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhccccCcHHHHHHHHHHHhc---CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 345567789999999999999 77888888888888999999999999988888877654
No 247
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.48 E-value=2.2 Score=31.64 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=35.5
Q ss_pred HHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 016387 346 EREAIERLEAM-GFDRAIVLEVFFACNKNEELAANYLLDHMH 386 (390)
Q Consensus 346 e~~ai~rL~~l-GF~~~~~iqAy~ac~kne~~Aan~L~~~~~ 386 (390)
+.+.|.+.+++ |-++..+.+.+-+|+||.+.|++..|++..
T Consensus 17 ~q~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 17 HQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 33569998887 889999999999999999999999998643
No 248
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=83.33 E-value=5.6 Score=37.59 Aligned_cols=73 Identities=14% Similarity=0.101 Sum_probs=54.2
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCeEEEe--CCe--ecCCCCchhhhccCCCCEEEEEEe
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPA-AQQMLIY--QGK--VLKDDTTLEENKVAENSFVVIMLT 76 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~-~~QkLi~--~Gk--iL~D~~tL~d~gI~~~s~I~v~v~ 76 (390)
+.+.|..++| ++.+.|+.+.|+.+|=..|....| +.. +-.-|.| +|. -|+.++.|.+.+++.+..+.+..+
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLG---LRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhC---CCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 5788999998 788999999999999999999999 432 3334444 443 377788888877666666655555
Q ss_pred cC
Q 016387 77 KN 78 (390)
Q Consensus 77 k~ 78 (390)
.+
T Consensus 99 ~k 100 (314)
T 1h4r_A 99 AK 100 (314)
T ss_dssp ES
T ss_pred EE
Confidence 43
No 249
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=82.63 E-value=5.3 Score=31.41 Aligned_cols=47 Identities=6% Similarity=0.143 Sum_probs=37.4
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCe
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQ-QMLIYQGK 52 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~-QkLi~~Gk 52 (390)
|+|++. ..|..+.+.|+++.+..+|.++|.+.++ +...+ ..|.|...
T Consensus 7 vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~---~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCS---FDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTT---CCSSCCEEEEECCS
T ss_pred EEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhC---CCCCCeEEEEEECC
Confidence 666666 4578889999999999999999999988 65444 67778653
No 250
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=81.58 E-value=0.61 Score=34.24 Aligned_cols=35 Identities=26% Similarity=0.563 Sum_probs=23.6
Q ss_pred hhCCHHHH--HHHHHHHhCccchHHHHHHHhhhCHH-HHHHHH
Q 016387 268 LRNSPQFQ--VLRAMVQANPQLLQPMLQELGKQNPQ-LVRLIQ 307 (390)
Q Consensus 268 L~~~P~~~--~lrq~vq~NP~ll~~~l~~i~~~NPq-l~~~I~ 307 (390)
+++||++. -|.++-++||++++ +.++||+ |+++|+
T Consensus 20 vq~NP~~L~~lLqql~~~nP~l~~-----~I~~n~e~Fl~ll~ 57 (61)
T 2f4m_B 20 IQQNPSLLPALLQQIGRENPQLLQ-----QISQHQEHFIQMLN 57 (61)
T ss_dssp HHHCGGGHHHHHHHHHHHCHHHHH-----HHHHSHHHHHHHHT
T ss_pred HHHCHHHHHHHHHHHHhHCHHHHH-----HHHHCHHHHHHHHc
Confidence 34488864 56678889998765 4556754 777764
No 251
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=80.95 E-value=1.5 Score=33.51 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=43.7
Q ss_pred EEEEEEeCCCcEEEEEeC--CCCCHHHHHHHHHHHhCCCCCC-CCCeEEEeCCeecCCCCchhhhccCCCCEEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVK--PEDTVFDVKMKIETVQGSDVYP-AAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~--~~~TV~dLK~~I~~~~g~~~ip-~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v 75 (390)
|+|+|. |+.+. +. ...||.+|.+.+ + ++ +...-+.++|.++..+ ...++-+++|+.|.++-
T Consensus 1 M~I~vN---Ge~~e--~~~~~~~Tl~~LL~~l----~---~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTVN---GKPST--VDGAESLNVTELLSAL----K---VAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEET---TEEEE--CSSCSCEEHHHHHHHH----T---CSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC
T ss_pred CEEEEC---CEEEE--cCCCCCCcHHHHHHHc----C---CCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe
Confidence 566554 76554 45 568999988754 5 66 6667788999998654 45566789999998774
No 252
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=80.80 E-value=2.9 Score=30.56 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=40.7
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEe
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLT 76 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~ 76 (390)
|+|+|+..+|+. +++....|+.+|-+.|....+ ....-...+|++..-+ +-+++|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~-----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG-----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH-----HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc-----cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 567777667876 466778999999888854433 1122234688876654 44556777777653
No 253
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=79.75 E-value=2.1 Score=31.21 Aligned_cols=61 Identities=11% Similarity=0.263 Sum_probs=41.8
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v 75 (390)
|+|+| +|+. +++....||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++|+.|.++-
T Consensus 1 m~i~v---Ng~~--~~~~~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILF---NDQA--MQCAAGQTVHELLEQL----D---QRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CCEEE---SSCE--ECCCTTCCHHHHHHHH----T---CCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred CEEEE---CCEE--EEcCCCCcHHHHHHHc----C---CCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 45544 4665 4556778999999876 4 556677788899988642 22334578899888763
No 254
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=78.77 E-value=6.9 Score=41.05 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=44.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CchhhhccCCC
Q 016387 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYP------AAQQMLIY----QGK-VLKDD-------------TTLEENKVAEN 68 (390)
Q Consensus 13 ~~~ieV~~~~TV~dLK~~I~~~~g~~~ip------~~~QkLi~----~Gk-iL~D~-------------~tL~d~gI~~~ 68 (390)
.+.+.|-..|||.++|+||-...-++ +| +++..|-+ .|+ +|.|. .||..|+|.+|
T Consensus 275 ~i~VkVLdCDTItQVKeKiLDavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 275 GVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred ceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 47778888999999999998664322 33 24445544 233 46653 27999999999
Q ss_pred CEEEEEEec
Q 016387 69 SFVVIMLTK 77 (390)
Q Consensus 69 s~I~v~v~k 77 (390)
.+|.++-+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999876543
No 255
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=77.93 E-value=2 Score=31.44 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=24.7
Q ss_pred CcchHHHHHHHHHccCCCCCHHHHHHHHHHH
Q 016387 156 GNNLEGAIQQILDMGGGTWDRDTVVRALRAA 186 (390)
Q Consensus 156 g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAa 186 (390)
+...+++|.-|+.+| |.+.++.+|++..
T Consensus 14 ~~~~~ea~~AL~aLG---Y~~~ea~kav~~v 41 (62)
T 1ixs_A 14 SEAAEEAVMALAALG---FKEAQARAVVLDL 41 (62)
T ss_dssp CHHHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 345678999999999 9999999999886
No 256
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=77.47 E-value=1.8 Score=32.53 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=42.6
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v 75 (390)
|+|+| +|+.+. + ...||.+|.+. .+ +++...-+.++|.++..+ ...+.-+++|+.|.++-
T Consensus 1 M~I~v---NG~~~e--~-~~~Tl~~LL~~----l~---~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTI---NGEQRE--V-QSASVAALMTE----LD---CTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEE---TTEEEC--C-CCSBHHHHHHH----TT---CCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEEC
T ss_pred CEEEE---CCEEEE--c-CCCcHHHHHHH----cC---CCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEc
Confidence 45555 366554 4 56899998764 46 777788888999988643 34456788999998874
No 257
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=77.14 E-value=1.5 Score=40.04 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=21.4
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHH
Q 016387 160 EGAIQQILDMGGGTWDRDTVVRALRA 185 (390)
Q Consensus 160 e~~I~~i~~MG~~~f~r~qv~~ALrA 185 (390)
+..|+++++|| |+++.|+.||+-
T Consensus 170 ~~~v~~~~~mg---~~~~~~~~al~~ 192 (215)
T 1tte_A 170 HDLIDEFESQG---FEKDKIVEVLRR 192 (215)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHH
Confidence 67999999999 999999999965
No 258
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=77.10 E-value=2.1 Score=29.42 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=29.7
Q ss_pred HHHHHHHHc-CCCh-HHHHHHHHHhCCCHHHHHHHH
Q 016387 348 EAIERLEAM-GFDR-AIVLEVFFACNKNEELAANYL 381 (390)
Q Consensus 348 ~ai~rL~~l-GF~~-~~~iqAy~ac~kne~~Aan~L 381 (390)
+.|.+++++ |-+. +.+++-+.+|+||.+.|++-.
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f 42 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAINGV 42 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 458899998 9865 999999999999999998744
No 259
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=76.91 E-value=8.2 Score=35.63 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=29.3
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHH-------Hh-CChHHHHHHHHh-CCC
Q 016387 160 EGAIQQILDMGGGTWDRDTVVRALRA-------AY-NNPERAVEYLYS-GIP 202 (390)
Q Consensus 160 e~~I~~i~~MG~~~f~r~qv~~ALrA-------af-nNpdrAveyL~~-GIP 202 (390)
...|+.|.+|| ++..++.+..+. .. .|...-++||.. |++
T Consensus 6 s~~l~~L~~lG---v~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~ 54 (270)
T 3m66_A 6 SETLQKLVLLG---VDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIE 54 (270)
T ss_dssp HHHHHHHHHTT---CCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCC
T ss_pred hHHHHHHHHcC---CCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCC
Confidence 47899999999 999999887655 22 255667788853 444
No 260
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=76.49 E-value=8.6 Score=40.05 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=55.2
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCeEEEeC---C--eecCCCCchhhhccCCCCEEEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYP-AAQQMLIYQ---G--KVLKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip-~~~QkLi~~---G--kiL~D~~tL~d~gI~~~s~I~v~v 75 (390)
|.|.|..++| ++.|.|+.+.|+.+|=..|+...| +. .+-.-|.|. | .-|+.+++|.+.+++.+..+.+..
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~Lg---L~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIG---LREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcC---CCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 6788999988 778999999999999999999999 43 233455442 2 246677888888777666666666
Q ss_pred ecCC
Q 016387 76 TKNK 79 (390)
Q Consensus 76 ~k~~ 79 (390)
+.+-
T Consensus 81 Rvkf 84 (575)
T 2i1j_A 81 RAKF 84 (575)
T ss_dssp EESS
T ss_pred EEEE
Confidence 6543
No 261
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=76.47 E-value=0.61 Score=38.21 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=42.2
Q ss_pred EEEEEEeCC------CcEEEEEeCC----CCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CC--e------ecCCCCch--
Q 016387 2 MKIFVKTLK------GTSFDVEVKP----EDTVFDVKMKIETVQGSDVYPAAQQMLIY-QG--K------VLKDDTTL-- 60 (390)
Q Consensus 2 MkI~Vktl~------g~~~~ieV~~----~~TV~dLK~~I~~~~g~~~ip~~~QkLi~-~G--k------iL~D~~tL-- 60 (390)
|+|+||... |+...++++. ..||.+|-..|.+... ..+-+|+. +| + +|-++...
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~-----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV-----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC-----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc-----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 778888764 4555677763 2599999888887753 22333331 23 1 34344333
Q ss_pred ---hhhccCCCCEEEEEE
Q 016387 61 ---EENKVAENSFVVIML 75 (390)
Q Consensus 61 ---~d~gI~~~s~I~v~v 75 (390)
.+|-+++|+.|.++-
T Consensus 80 l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp HTSSCCCCCSSCEEEEEE
T ss_pred cCCcccCCCCcCEEEEeC
Confidence 246799999977753
No 262
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=76.39 E-value=11 Score=36.55 Aligned_cols=72 Identities=24% Similarity=0.236 Sum_probs=52.0
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---------eecCCCCchhhhccCCCCEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---------KVLKDDTTLEENKVAENSFVV 72 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~G---------kiL~D~~tL~d~gI~~~s~I~ 72 (390)
+.++|..++|....+.|+...|+.+|-..|+...|. ...+..-|.+.. .-|+-+++|.+.++.....++
T Consensus 86 ~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 86 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI--TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC--SCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 578899999999999999999999999999999993 234445665532 234556677776665555554
Q ss_pred EEE
Q 016387 73 IML 75 (390)
Q Consensus 73 v~v 75 (390)
+.+
T Consensus 164 frv 166 (371)
T 3ivf_A 164 LRR 166 (371)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 263
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=76.24 E-value=12 Score=31.24 Aligned_cols=61 Identities=25% Similarity=0.222 Sum_probs=40.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHh----CCCCCCC----CCeEEEe-C---CeecCC----------C----Cchhhhcc
Q 016387 12 TSFDVEVKPEDTVFDVKMKIETVQ----GSDVYPA----AQQMLIY-Q---GKVLKD----------D----TTLEENKV 65 (390)
Q Consensus 12 ~~~~ieV~~~~TV~dLK~~I~~~~----g~~~ip~----~~QkLi~-~---GkiL~D----------~----~tL~d~gI 65 (390)
..+.+.|-..|||.++|+||-... + +|. +++.|-| . |.+|.| . .||..|+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~---~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V 115 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNG---SPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI 115 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHS---SCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCC---CcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence 357788888999999999996542 4 443 3444433 1 233332 1 26788999
Q ss_pred CCCCEEEEEE
Q 016387 66 AENSFVVIML 75 (390)
Q Consensus 66 ~~~s~I~v~v 75 (390)
.+|.+|.++.
T Consensus 116 ~Dgatlal~k 125 (126)
T 3kuz_A 116 SNGSTIKVFK 125 (126)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEee
Confidence 9999997763
No 264
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=76.04 E-value=5 Score=33.64 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeec-----CC--CCchhhhccCCCCEEEEEE
Q 016387 21 EDTVFDVKMKIETVQGSDVYPAAQQMLIY--QGKVL-----KD--DTTLEENKVAENSFVVIML 75 (390)
Q Consensus 21 ~~TV~dLK~~I~~~~g~~~ip~~~QkLi~--~GkiL-----~D--~~tL~d~gI~~~s~I~v~v 75 (390)
..|+.+|-+.|..++| +. ++..++- ..+.| .| +++|+++||+.|++|.|+=
T Consensus 19 ~~TL~dLV~~l~~~~g---y~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYS---YP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHT---CC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcC---CC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4799999888988899 65 3555542 34454 23 4799999999999998874
No 265
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=76.01 E-value=5.5 Score=30.92 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=35.2
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
+..-+.+|-+.=|.+.++.+.+.|--..-+|++||++|+++.
T Consensus 34 L~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 34 LYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 444567777765678999999999999999999999999964
No 266
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=75.72 E-value=12 Score=39.22 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=49.3
Q ss_pred EEEEEEeCC---CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC----------
Q 016387 2 MKIFVKTLK---GTSFDVEVKPEDTVFDVKMKIETVQGSDVYP------AAQQMLIY----QGK-VLKDD---------- 57 (390)
Q Consensus 2 MkI~Vktl~---g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip------~~~QkLi~----~Gk-iL~D~---------- 57 (390)
|.|.|-... ...+.+.|-..|||.++|+||-+..-++ .| +++..|-+ .|+ +|.|.
T Consensus 234 ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~w 312 (627)
T 3ig3_A 234 LTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKG-IPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDW 312 (627)
T ss_dssp EEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTE
T ss_pred EEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCccceeEeeCCCCceeeccCCccccccCce
Confidence 445554333 2457788889999999999998765322 33 34555543 233 45542
Q ss_pred ---CchhhhccCCCCEEEEEEec
Q 016387 58 ---TTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 58 ---~tL~d~gI~~~s~I~v~v~k 77 (390)
.||..|+|.+|.+|.++-+.
T Consensus 313 krLNTL~HY~V~Dga~v~L~p~~ 335 (627)
T 3ig3_A 313 KRVNSLAHYQVTDGSLVALVPKQ 335 (627)
T ss_dssp EECCBTTTTTCCTTCEEEEEEC-
T ss_pred eEecchhhcCCCCCceEEEEecc
Confidence 26899999999999987654
No 267
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=75.68 E-value=3.8 Score=31.16 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=33.1
Q ss_pred HHHHHHHc-CC-ChHHHHHHHHHhCCCHHHHHHHHhhcC
Q 016387 349 AIERLEAM-GF-DRAIVLEVFFACNKNEELAANYLLDHM 385 (390)
Q Consensus 349 ai~rL~~l-GF-~~~~~iqAy~ac~kne~~Aan~L~~~~ 385 (390)
-|++|+++ |. |-...-+||-|.++|...|+-||-+..
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 49999998 88 888888999999999999999998753
No 268
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=73.09 E-value=6.9 Score=26.16 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=33.0
Q ss_pred hHHHHHHHHHc-cCCCCCHHHHHHHHHHHhCChHHHHHHHHh
Q 016387 159 LEGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (390)
Q Consensus 159 ~e~~I~~i~~M-G~~~f~r~qv~~ALrAafnNpdrAveyL~~ 199 (390)
.++.|.+.++. | -+++.++.-|.++.+|.++||...+.
T Consensus 5 ~~~~i~~F~~iTg---~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 5 RQDALREFVAVTG---AEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHHHTC---CCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---cCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 56789999998 5 68999999999999999999985543
No 269
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=72.37 E-value=5.9 Score=29.25 Aligned_cols=54 Identities=9% Similarity=0.085 Sum_probs=39.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe--EEEeCCeecCCCCchhhhccCCCCEEEEE
Q 016387 12 TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQ--MLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 12 ~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~Q--kLi~~GkiL~D~~tL~d~gI~~~s~I~v~ 74 (390)
+...+++....||.+|.+.+...... .... .+..||+....+ .-+++|+.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~----~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ----INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG----GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc----hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35667777778999999999877430 1233 677899988754 468899998876
No 270
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=72.22 E-value=1.5 Score=31.36 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHc--cCCCCCHHHHHHHHHHHhCChHHHHHHHHh
Q 016387 157 NNLEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (390)
Q Consensus 157 ~~~e~~I~~i~~M--G~~~f~r~qv~~ALrAafnNpdrAveyL~~ 199 (390)
.+.++.|++|.+| . ++++-+...|++--+|.|-||+.|+.
T Consensus 10 ~e~~~~~~~L~~MFP~---lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 10 NERKDTLNTLQNMFPD---MDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHHSTT---SCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHHccc---CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4578899999999 5 89999999999999999999999873
No 271
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=74.27 E-value=0.8 Score=38.16 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=32.2
Q ss_pred HHHHHHHc-CC-ChHHHHHHHHHhCCCHHHHHHHHhhc
Q 016387 349 AIERLEAM-GF-DRAIVLEVFFACNKNEELAANYLLDH 384 (390)
Q Consensus 349 ai~rL~~l-GF-~~~~~iqAy~ac~kne~~Aan~L~~~ 384 (390)
-|++|+++ |. |-+..-+||-||++|...|+.||-++
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 38899998 88 68888899999999999999999765
No 272
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=71.58 E-value=9.3 Score=29.84 Aligned_cols=47 Identities=21% Similarity=0.084 Sum_probs=32.3
Q ss_pred CEEEEEEeCCCcE-EEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEE-EeC
Q 016387 1 MMKIFVKTLKGTS-FDVEVK-PEDTVFDVKMKIETVQGSDVYPAAQQML-IYQ 50 (390)
Q Consensus 1 mMkI~Vktl~g~~-~~ieV~-~~~TV~dLK~~I~~~~g~~~ip~~~QkL-i~~ 50 (390)
|..|+.|....+. ..|.++ ...+|.+||+.|..+.+ +-..+.-| ||+
T Consensus 6 mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k---l~~~dfDL~i~n 55 (86)
T 2c7h_A 6 MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK---LKAADCDLQITN 55 (86)
T ss_dssp BEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT---CCTTTEEEEEEE
T ss_pred eeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC---CCCCcccEEEeC
Confidence 5567777766654 457777 56799999999998887 33344444 443
No 273
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=71.49 E-value=16 Score=29.30 Aligned_cols=72 Identities=19% Similarity=0.064 Sum_probs=49.7
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE------eCCeecCCCCchhhh----ccCCCCEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI------YQGKVLKDDTTLEEN----KVAENSFV 71 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi------~~GkiL~D~~tL~d~----gI~~~s~I 71 (390)
.-|+|-..+|....|.|+..+|+.++-+++..+.++. . ...--|+ +--+.|+|+..|-+. .+.....+
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~-~-~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~ 87 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL-S-DETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRF 87 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC-C-CCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEE
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC-C-CCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEE
Confidence 3466667899999999999999999999999998842 1 2222332 133778998765444 45556666
Q ss_pred EEEE
Q 016387 72 VIML 75 (390)
Q Consensus 72 ~v~v 75 (390)
++..
T Consensus 88 ~F~k 91 (100)
T 1wgr_A 88 VFRK 91 (100)
T ss_dssp EECS
T ss_pred EEec
Confidence 5543
No 274
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=70.98 E-value=21 Score=26.31 Aligned_cols=56 Identities=7% Similarity=0.078 Sum_probs=36.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCC--CCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEE
Q 016387 13 SFDVEVKPEDTVFDVKMKIETVQGS--DVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 13 ~~~ieV~~~~TV~dLK~~I~~~~g~--~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~ 74 (390)
.+.++ ....||.+|++.+...... ..+......+..||+.... +.-+++|+.|.++
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 45555 5677999999998755210 0011234567889998764 4468899998876
No 275
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=70.23 E-value=4.9 Score=36.15 Aligned_cols=37 Identities=30% Similarity=0.268 Sum_probs=33.3
Q ss_pred HHHHHHHHHc-cCCCCCHHHHHHHHHHHhCChHHHHHHHHh
Q 016387 160 EGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (390)
Q Consensus 160 e~~I~~i~~M-G~~~f~r~qv~~ALrAafnNpdrAveyL~~ 199 (390)
-.+|.+|-++ | ..=-+|..||..+.+|.|.|++||--
T Consensus 4 a~~VKeLRe~TG---agmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 4 MELIKKLREATG---AGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3679999998 7 88889999999999999999999963
No 276
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=70.07 E-value=6.1 Score=31.83 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHhCCCHHHHHHHH
Q 016387 341 QVTPEEREAIERLEA-MGFDRAIVLEVFFACNKNEELAANYL 381 (390)
Q Consensus 341 ~~t~ee~~ai~rL~~-lGF~~~~~iqAy~ac~kne~~Aan~L 381 (390)
.+++|+ |+.+++ .|-+|..+++||..|++|.--|.-+|
T Consensus 63 ~i~~ed---i~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDD---IELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHH---HHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHH---HHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 467777 444443 69999999999999999999888766
No 277
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=69.97 E-value=14 Score=34.81 Aligned_cols=70 Identities=10% Similarity=-0.033 Sum_probs=49.1
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--eecCCCCchhhhccCCCCEEEE
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ---G--KVLKDDTTLEENKVAENSFVVI 73 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~---G--kiL~D~~tL~d~gI~~~s~I~v 73 (390)
|.+.|..++|....+.|+...|+.+|=..|....|. ...+-.-|.|. | .-|+.++.|.+......-.+++
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~f 92 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNL--LEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTF 92 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTC--SSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEE
Confidence 678999999999999999999999999999999993 22333455442 3 2367778887764333333433
No 278
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=68.85 E-value=5.7 Score=32.01 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=32.0
Q ss_pred HHHHHHHHH-ccCCCCCHHHHHHHHHHHhCChHHHHHHHH
Q 016387 160 EGAIQQILD-MGGGTWDRDTVVRALRAAYNNPERAVEYLY 198 (390)
Q Consensus 160 e~~I~~i~~-MG~~~f~r~qv~~ALrAafnNpdrAveyL~ 198 (390)
++.|.-+|+ +| -+|+++++||+.+.||.=.|+-||.
T Consensus 66 ~edi~lv~~q~~---vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 66 EDDIELVMNQTG---ASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 567888888 58 9999999999999999999999883
No 279
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=68.29 E-value=20 Score=28.88 Aligned_cols=69 Identities=10% Similarity=0.175 Sum_probs=48.3
Q ss_pred EEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCee--cCCCCchhhhccCCCCEEEEEEe
Q 016387 5 FVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI---YQGKV--LKDDTTLEENKVAENSFVVIMLT 76 (390)
Q Consensus 5 ~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi---~~Gki--L~D~~tL~d~gI~~~s~I~v~v~ 76 (390)
.|-..+...+++.+....|+.+|+..+.++.+ +..+.++|+ ++|.. |+++..--.-.+.-+..|++..+
T Consensus 13 ~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 13 HVYITEHSYVSVKAKVSSIAQEILKVVAEKIQ---YAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EEECSSSCEEEECCCTTCBSHHHHHHHHHHHT---SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEEeccCceEEEEEeccchHHHHHHHHHHHhc---CCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 44555677788889999999999999999998 666678875 67754 45543322223445667877665
No 280
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=68.24 E-value=19 Score=34.57 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=41.9
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC-eecCC-CCchhhhccC
Q 016387 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG-KVLKD-DTTLEENKVA 66 (390)
Q Consensus 11 g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~G-kiL~D-~~tL~d~gI~ 66 (390)
-....+.+.+..|+.+||++|+..++ ++++.|.|+|.+ +..-+ .+....|.-.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~---i~~~~q~~l~~~~~~~~~~~~~~~~~~~~ 375 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKT 375 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHC---CCSTTEEEESSSSEECCCSSCBTTSSCCC
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcC---CChhhhHHHhcCCCCCCCCCCccccCCCC
Confidence 34567888999999999999999999 999999999998 44434 4456666543
No 281
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=67.69 E-value=5.4 Score=38.05 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=33.3
Q ss_pred HHHHHHHHc-cCCCCCHHHHHHHHHHHhCChHHHHHHHHh
Q 016387 161 GAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS 199 (390)
Q Consensus 161 ~~I~~i~~M-G~~~f~r~qv~~ALrAafnNpdrAveyL~~ 199 (390)
.+|++|-++ | +.=-+|..||..+.+|.|.|+|||--
T Consensus 6 ~~VKeLRe~TG---agmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 6 ELLMKLRRKTG---YSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 579999998 7 88899999999999999999999984
No 282
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=65.49 E-value=2.9 Score=31.29 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=26.2
Q ss_pred HhhCCHHHHHHHHHHHhCccchHH-HHHHHhhhCHHHHHHHH
Q 016387 267 FLRNSPQFQVLRAMVQANPQLLQP-MLQELGKQNPQLVRLIQ 307 (390)
Q Consensus 267 ~L~~~P~~~~lrq~vq~NP~ll~~-~l~~i~~~NPql~~~I~ 307 (390)
.++..|.|.++-+-|++||+.+.. . .+||.+.+.|.
T Consensus 27 ~~~~DP~~~~~lq~i~~NP~~i~~~~-----~~dPrv~~~l~ 63 (71)
T 2llv_A 27 EMMKDPQLVAKLIGYKQNPQAIGQDL-----FTDPRLMTIMA 63 (71)
T ss_dssp HHHHSCTHHHHHHHHHHSCTTHHHHT-----TTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHCHHHHHHHH-----hhCcHHHHHHH
Confidence 344667788888888899988753 2 35888888775
No 283
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.44 E-value=9.4 Score=27.65 Aligned_cols=40 Identities=35% Similarity=0.409 Sum_probs=34.2
Q ss_pred chHHHHHHHHHc-cCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 158 NLEGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 158 ~~e~~I~~i~~M-G~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
..++.|.+.|++ | -+++.++.-|.++-+|.++||...+..
T Consensus 14 ~~~e~i~qF~~iTg---~~~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 14 ALKGLIQQFTTITG---ASESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp HHHHHHHHHHHHTC---CCHHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 457789999997 6 679999999999999999999866543
No 284
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=62.77 E-value=8.5 Score=27.66 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=39.1
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEE
Q 016387 9 LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 9 l~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v 75 (390)
++|+.+ ++ ...||.+|.+.+ + ++.....+..+|+++..+ .-.+.-+++|+.|.++-
T Consensus 4 vNg~~~--~~-~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPR--PL-EGKTLKEVLEEM----G---VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEE--CC-TTCCHHHHHHHH----T---BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEE--Ec-CCCcHHHHHHHc----C---CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 456665 44 568999999877 4 556667778899988643 22334588999998873
No 285
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=62.18 E-value=46 Score=25.94 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=43.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeec-CCCCchhhh--ccCCCCEEEEEEec
Q 016387 14 FDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY-QGKVL-KDDTTLEEN--KVAENSFVVIMLTK 77 (390)
Q Consensus 14 ~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~-~GkiL-~D~~tL~d~--gI~~~s~I~v~v~k 77 (390)
..+-|+.+.||..|...|..+.+ +.+++--.+| +...+ ..+.+++++ .-+++.+|+|.-..
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~---l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys~ 86 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLK---LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCK 86 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTT---CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEES
T ss_pred cEEEcCCCCCHHHHHHHHHHHhC---CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 34667889999999999999988 6666544444 66555 446677665 33478888887654
No 286
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=59.91 E-value=6.9 Score=31.27 Aligned_cols=59 Identities=12% Similarity=0.221 Sum_probs=40.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-----------CeEEEeCC-eecCC------CCchhhhccCCCCEEEEE
Q 016387 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYPAA-----------QQMLIYQG-KVLKD------DTTLEENKVAENSFVVIM 74 (390)
Q Consensus 13 ~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~-----------~QkLi~~G-kiL~D------~~tL~d~gI~~~s~I~v~ 74 (390)
...|+|++++|+.+|-+.|.+.-. +-.. ...|++.+ ..|+. +++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~---~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSAS---LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTT---CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChH---hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 456899999999999999998533 2111 22333333 23332 467999999999998873
No 287
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=59.70 E-value=8 Score=32.35 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=29.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 016387 14 FDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY 49 (390)
Q Consensus 14 ~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~ 49 (390)
..+.|-.+.||.+||..|+...| ++++.|||-+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg---~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhC---CCcccEEEEE
Confidence 35678889999999999999999 9999999853
No 288
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=57.59 E-value=15 Score=29.21 Aligned_cols=70 Identities=10% Similarity=-0.047 Sum_probs=45.9
Q ss_pred CEEEEEEeC--C-CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEE
Q 016387 1 MMKIFVKTL--K-GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 1 mMkI~Vktl--~-g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v 75 (390)
||+|.|-.. . +..+.+++....||.++-+...-......+.....++-.+|++... +.-+++|+.|-++-
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~-----d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKL-----TDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCT-----TCBCCTTCEEEECC
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCC-----CccCCCCCEEEEEe
Confidence 355655432 2 3346678889999999988875432210044456788888988873 44578899998774
No 289
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=56.48 E-value=12 Score=39.87 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=41.4
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC-eecCCCCchhhh
Q 016387 10 KGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQG-KVLKDDTTLEEN 63 (390)
Q Consensus 10 ~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~G-kiL~D~~tL~d~ 63 (390)
..+.+.+.+.++.|+.+||.+|+..+| ++++.|.|++.+ -.+........|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~---i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTG---IPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSC---CCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhC---CCHHHHHHHhccCCCCCCCcchhhh
Confidence 345567889999999999999999999 999999999865 445555566665
No 290
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=54.74 E-value=36 Score=28.12 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=45.3
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC------CeEEE---eCCee--cCCCC--chhhhccCCCCE
Q 016387 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAA------QQMLI---YQGKV--LKDDT--TLEENKVAENSF 70 (390)
Q Consensus 4 I~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~------~QkLi---~~Gki--L~D~~--tL~d~gI~~~s~ 70 (390)
..|-..+...+++.+....|+.+|+..+.++.+ +..+ +++|+ ++|.. |+++. ....++ -+..
T Consensus 12 ~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~--~NgR 86 (120)
T 2dhz_A 12 CRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQ---YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALG--INSH 86 (120)
T ss_dssp ECEECTTSCCCCEEECTTCCHHHHHHHHHHHST---TCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSC--SSEE
T ss_pred EEEEeccCceEEEEEeccccHHHHHHHHHHHhc---cccccccccCceEEEEEccCCcEeecCCcceEEEeecc--ccce
Confidence 344445666677888899999999999999998 4333 67774 67743 45443 334444 4567
Q ss_pred EEEEEe
Q 016387 71 VVIMLT 76 (390)
Q Consensus 71 I~v~v~ 76 (390)
|++..+
T Consensus 87 Lfvc~k 92 (120)
T 2dhz_A 87 LFACTR 92 (120)
T ss_dssp EEEECT
T ss_pred EEEeeh
Confidence 766643
No 291
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=53.93 E-value=68 Score=26.06 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=41.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeecCCCCchhhh--cc-CCCCEEEEEEec
Q 016387 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQ-MLIYQGKVLKDDTTLEEN--KV-AENSFVVIMLTK 77 (390)
Q Consensus 16 ieV~~~~TV~dLK~~I~~~~g~~~ip~~~Q-kLi~~GkiL~D~~tL~d~--gI-~~~s~I~v~v~k 77 (390)
+-|..+.||.+|...|....+ +.+++- -|+.++....-+.+++++ .. .++.+|+|....
T Consensus 49 flVp~~~tv~~f~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQ---LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHhhHHhhc---CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 356678899999999999988 555554 444466544566777776 23 357899988764
No 292
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=53.90 E-value=29 Score=33.19 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=27.4
Q ss_pred chHHHHHHHHHccCCCCCHHHHHHHH----HHHhCChHHHHHHHH
Q 016387 158 NLEGAIQQILDMGGGTWDRDTVVRAL----RAAYNNPERAVEYLY 198 (390)
Q Consensus 158 ~~e~~I~~i~~MG~~~f~r~qv~~AL----rAafnNpdrAveyL~ 198 (390)
+.+..|..|.++| +++++++++- ...-.|||.-++||.
T Consensus 18 ~~~~~v~~L~s~G---l~~~~~~~~~p~l~~~s~~~~~~vl~fL~ 59 (343)
T 3mva_O 18 KNEDLLKNLLTMG---VDIDMARKRQPGVFHRMITNEQDLKMFLL 59 (343)
T ss_dssp --CCHHHHHHHHT---CCHHHHHHHCGGGGGCSCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHcC---CCHHHHHHhCchhhccCcccHHHHHHHHH
Confidence 3467899999999 9999887652 123357888888885
No 293
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=53.77 E-value=42 Score=34.39 Aligned_cols=69 Identities=16% Similarity=0.054 Sum_probs=47.5
Q ss_pred EEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCeEE--EeCCee---cCCCCchhhhccCCCCEE
Q 016387 2 MKIFVKTLKGT--SFDVEVKPEDTVFDVKMKIETVQGSDVYP---AAQQML--IYQGKV---LKDDTTLEENKVAENSFV 71 (390)
Q Consensus 2 MkI~Vktl~g~--~~~ieV~~~~TV~dLK~~I~~~~g~~~ip---~~~QkL--i~~Gki---L~D~~tL~d~gI~~~s~I 71 (390)
|+|++-....+ .+.+-|..+.||.||-..+..+.+ ++ ....|| +|+||+ +.++.+|+.+.=....++
T Consensus 340 ~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~---~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~ 416 (530)
T 2ylm_A 340 FKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVE---LGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTF 416 (530)
T ss_dssp EEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCC---CCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEE
T ss_pred EEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcC---CCcCCcccEEEEEEECCEEEEecCCCcccccccccccceE
Confidence 67776644333 466777889999999999999888 54 567777 588875 577888876532214444
Q ss_pred EE
Q 016387 72 VI 73 (390)
Q Consensus 72 ~v 73 (390)
.+
T Consensus 417 ri 418 (530)
T 2ylm_A 417 RI 418 (530)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 294
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=52.23 E-value=5.2 Score=30.05 Aligned_cols=48 Identities=23% Similarity=0.465 Sum_probs=34.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEE
Q 016387 15 DVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 15 ~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~ 74 (390)
.+++....||.+|.+.+ + ++.....+..+|+++..+ .-|++|+.|.++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~---~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----G---FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----T---CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----C---CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35666778999998765 4 555666788999998765 457788877654
No 295
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=52.23 E-value=39 Score=25.33 Aligned_cols=58 Identities=7% Similarity=0.163 Sum_probs=36.4
Q ss_pred EEeCCCCCHHHHHHHHHHHhCC--CC--C----CCCCeEEEeCCeecCCCCchhhhccCCCCEEEEE
Q 016387 16 VEVKPEDTVFDVKMKIETVQGS--DV--Y----PAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 16 ieV~~~~TV~dLK~~I~~~~g~--~~--i----p~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~ 74 (390)
++++...||.+|.+.+...... .. + ......+..||+...... -.+.-+++|+.|.++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEe
Confidence 4566668999999999877320 00 0 013456778888775221 123458899998876
No 296
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=51.98 E-value=53 Score=25.34 Aligned_cols=72 Identities=14% Similarity=0.077 Sum_probs=52.2
Q ss_pred EEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHh-CCCC-CCCCCeEEEeCCee--cCCCCchhhhccCCCCEEEEEE
Q 016387 4 IFVKTLKGT-SFDVEVKPEDTVFDVKMKIETVQ-GSDV-YPAAQQMLIYQGKV--LKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 4 I~Vktl~g~-~~~ieV~~~~TV~dLK~~I~~~~-g~~~-ip~~~QkLi~~Gki--L~D~~tL~d~gI~~~s~I~v~v 75 (390)
|+.+..+.- ..-+.|+..+|+.++-++++.-. |... -.+.-.+..++|.. |.++.++.+-||+.-+.|.++.
T Consensus 6 l~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 6 VHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred eEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 444433332 24578999999999999997542 3221 11236678899988 9999999999999999998765
No 297
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=51.56 E-value=82 Score=24.36 Aligned_cols=73 Identities=19% Similarity=0.109 Sum_probs=45.0
Q ss_pred CEEEEEEeCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCC-CCCCCC-eE---EEe-CCeecCCCCchhhhccCCCCEEEE
Q 016387 1 MMKIFVKTLKGTSFDVEVK-PEDTVFDVKMKIETVQGSD-VYPAAQ-QM---LIY-QGKVLKDDTTLEENKVAENSFVVI 73 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~-~~~TV~dLK~~I~~~~g~~-~ip~~~-Qk---Li~-~GkiL~D~~tL~d~gI~~~s~I~v 73 (390)
.|||+|+.. +..+.|-+. ...||..|-++-..++-+. ...++. .. |-+ .|-+|+.+..|.+. +.++++|.-
T Consensus 2 ~MKvtV~fg-~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A 79 (85)
T 2ns5_A 2 EFKVTVCFG-RTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVA 79 (85)
T ss_dssp CEEEEEEET-TEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEE
T ss_pred ccEEEEEEC-CEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEE
Confidence 489999953 555666663 4569999877665443210 011222 22 223 78899988888886 457777765
Q ss_pred EE
Q 016387 74 ML 75 (390)
Q Consensus 74 ~v 75 (390)
+.
T Consensus 80 ~~ 81 (85)
T 2ns5_A 80 VF 81 (85)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 298
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=51.13 E-value=59 Score=27.11 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=42.3
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCCeec-CCCCchhhh--cc-CCCCEEEEEEec
Q 016387 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI-YQGKVL-KDDTTLEEN--KV-AENSFVVIMLTK 77 (390)
Q Consensus 16 ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi-~~GkiL-~D~~tL~d~--gI-~~~s~I~v~v~k 77 (390)
+-|..+.||.+|...|....+ +.+++--.+ |.++.+ .-+.+++++ .- .++.+|+|..+.
T Consensus 57 flVp~~~tv~qf~~~iRkrL~---l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 120 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQ---LNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYAS 120 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhC---CCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 457889999999999999998 666665545 655555 456677766 22 357788887653
No 299
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=50.67 E-value=18 Score=25.74 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=32.7
Q ss_pred cccccCcchHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhCCC
Q 016387 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (390)
Q Consensus 151 s~l~~g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~GIP 202 (390)
|.++.+..+.+.+.+ |+|+-+.+||+...+|..+|.+.| ||.
T Consensus 4 ~~~~~~~~l~~~l~~--------~E~~~i~~aL~~~~gn~~~aA~~L--Gis 45 (63)
T 3e7l_A 4 SYLLKIKELKEAKKE--------FEKIFIEEKLREYDYDLKRTAEEI--GID 45 (63)
T ss_dssp CTTTTCSCHHHHHHH--------HHHHHHHHHHHHTTTCHHHHHHHH--TCC
T ss_pred HHhccCCCHHHHHHH--------HHHHHHHHHHHHhCCCHHHHHHHH--CcC
Confidence 344555566666553 789999999999999999999988 665
No 300
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=49.87 E-value=11 Score=25.78 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCccchHHHHHHHh
Q 016387 274 FQVLRAMVQANPQLLQPMLQELG 296 (390)
Q Consensus 274 ~~~lrq~vq~NP~ll~~~l~~i~ 296 (390)
=+++-.++++||+++-.+|.|-.
T Consensus 19 qqqvl~ILksnPqLMAAfIkQR~ 41 (47)
T 1zoq_C 19 QQQVLNILKSNPQLMAAFIKQRT 41 (47)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCHHHHHHHHHHHH
Confidence 35677788888888877776654
No 301
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=49.79 E-value=20 Score=25.90 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHh
Q 016387 344 PEEREAIERLEAMGFDRAIVLEVFFAC 370 (390)
Q Consensus 344 ~ee~~ai~rL~~lGF~~~~~iqAy~ac 370 (390)
+...++++-|..|||.+..+-+|.-.+
T Consensus 15 ~~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 15 EAAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 334579999999999999988888776
No 302
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=49.40 E-value=79 Score=24.34 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=48.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHH-hCCCC--CCCCCeEEEeCC--eecCCCCchhhhccCCCCEEEEEEe
Q 016387 14 FDVEVKPEDTVFDVKMKIETV-QGSDV--YPAAQQMLIYQG--KVLKDDTTLEENKVAENSFVVIMLT 76 (390)
Q Consensus 14 ~~ieV~~~~TV~dLK~~I~~~-~g~~~--ip~~~QkLi~~G--kiL~D~~tL~d~gI~~~s~I~v~v~ 76 (390)
.-+.|+.++|+.++-++++-- .|... -|-.-.+..++| +.|..+.++.+-||+.-+.|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 447899999999999999743 23221 122245667888 8999999999999999999988753
No 303
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=49.32 E-value=33 Score=24.71 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=37.7
Q ss_pred cCcchHHHHHHHHHc--cCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 155 AGNNLEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 155 ~g~~~e~~I~~i~~M--G~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
.-+.++.+|+.+.+| - ++++++..-|+-. +|++.-+|=++.|
T Consensus 13 ~~sql~~Mve~V~~mFPq---v~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 13 FQGQLNAMAHQIQEMFPQ---VPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHHCTT---SCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcCC---CCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 345788999999999 5 7999999999998 9999999999988
No 304
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.05 E-value=39 Score=24.76 Aligned_cols=43 Identities=21% Similarity=0.112 Sum_probs=35.8
Q ss_pred cchHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 157 NNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 157 ~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
.+.++.|.+.+++-|. =+.+.++.-|..+-+|.++||...+.+
T Consensus 16 ~~~~e~i~qF~~ITg~-~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 16 QEQTEKLLQFQDLTGI-ESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHHCC-SCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHhCC-CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4567899999998532 378899999999999999999877766
No 305
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=48.88 E-value=27 Score=28.72 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=41.7
Q ss_pred CEEEEEEeCCC-------cEEEEEeC--C---------CCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee--cCCC
Q 016387 1 MMKIFVKTLKG-------TSFDVEVK--P---------EDTVFDVKMKIETVQGSDVYPAAQQMLIYQG---KV--LKDD 57 (390)
Q Consensus 1 mMkI~Vktl~g-------~~~~ieV~--~---------~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~G---ki--L~D~ 57 (390)
||.++||..-. ....+.++ + ..+...|+.+|...+.. +......|.|.. -. +..+
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~--L~~~~f~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSD 95 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSH
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCH
Confidence 67777776542 33334443 2 24899999999999842 555567777753 22 2222
Q ss_pred -CchhhhccCCCCEEEEEEec
Q 016387 58 -TTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 58 -~tL~d~gI~~~s~I~v~v~k 77 (390)
.....+.......+.|.++.
T Consensus 96 eEL~~Al~~~~~~~lRlyVke 116 (117)
T 2ktr_A 96 EELTMAMSYVKDDIFRIYIKE 116 (117)
T ss_dssp HHHHHHHHHCCSSEEEEEEEE
T ss_pred HHHHHHHHhcCCCeEEEEEEe
Confidence 22222333334577777654
No 306
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=47.50 E-value=25 Score=27.99 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=33.9
Q ss_pred EEEEEEeCC-------CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-----CCeEEEeCC
Q 016387 2 MKIFVKTLK-------GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPA-----AQQMLIYQG 51 (390)
Q Consensus 2 MkI~Vktl~-------g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~-----~~QkLi~~G 51 (390)
|+|+|..-+ +..+.|-|.++.+..+|..+|..+.+ ++. ...||-|+.
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~---~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKIS---NTHNNNISPITKIKYQD 64 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHH---HHCSSCCCCCCCEEEEC
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHc---CCccccccceeEEEEEc
Confidence 556665432 45789999999999999999999988 431 234666654
No 307
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=47.02 E-value=61 Score=25.51 Aligned_cols=59 Identities=8% Similarity=0.010 Sum_probs=40.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCCCchhhh--ccCCCCEEEEEEec
Q 016387 14 FDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVL-KDDTTLEEN--KVAENSFVVIMLTK 77 (390)
Q Consensus 14 ~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL-~D~~tL~d~--gI~~~s~I~v~v~k 77 (390)
-.+-|+.+.||..|...|..+.+ +. ..-|+.+...+ ..+.+++++ ..+++.+|+|..+.
T Consensus 30 ~KflV~~~~t~~~~~~~lRkrL~---l~--alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Ys~ 91 (96)
T 1wz3_A 30 SKFKVSGSDKFANVIDFLRRQLH---SD--SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYAC 91 (96)
T ss_dssp CEEEEETTSBTHHHHHHHHHHHT---CS--SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEEES
T ss_pred cEEEeCCCCcHHHHHHHHHHhcC---Cc--eEEEEECCcccCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 34567889999999999999988 55 45553344244 456677766 34557788887654
No 308
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=46.97 E-value=49 Score=24.93 Aligned_cols=63 Identities=25% Similarity=0.338 Sum_probs=43.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 3 kI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
.|+|.+.+|+.+ ++....|+.|+=..|....+.. -.--..+|+...-+ +-+++|+.|.++..+
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~-----~v~AkVNG~~v~L~-----~~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNR-----MIGAKVDGRIVPID-----YKVKTGEIIDVLTTK 69 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHT-----EEEEEETTEEECTT-----CBCCTTCBEEEEECC
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcc-----eEEEEECCEEcCCC-----cccCCCCEEEEEccC
Confidence 578888899775 5677889999988887766521 12223478766543 456788888887543
No 309
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=46.84 E-value=19 Score=26.97 Aligned_cols=41 Identities=15% Similarity=0.299 Sum_probs=24.6
Q ss_pred hHHhhCCHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHhHH
Q 016387 265 LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQA 311 (390)
Q Consensus 265 ~~~L~~~P~~~~lrq~vq~NP~ll~~~l~~i~~~NPql~~~I~~n~e 311 (390)
+..+++.|.++.+ .+||++. .+|+++.+ ||+.+.-...||.
T Consensus 13 ~~~~m~dPEi~~i----m~DP~~~-~~lq~~~~-NP~~~~k~~~nP~ 53 (71)
T 2llw_A 13 YQRAMKDPEVAAI----MQDPVMQ-SILQQAQQ-NPAALQEHMKNPE 53 (71)
T ss_dssp HHHHHHSHHHHHH----HTCTHHH-HHHHHHHH-CHHHHHHHHHSHH
T ss_pred HHHHhcCHHHHHH----hCCHHHH-HHHHHHHH-CHHHHHHHHhCHH
Confidence 4445567775433 3688754 45566444 7877766666654
No 310
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.82 E-value=1.1e+02 Score=24.01 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 22 DTVFDVKMKIETVQGSDVYPAAQQMLIY--QGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 22 ~TV~dLK~~I~~~~g~~~ip~~~QkLi~--~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
.+..+|+.|...+++ ++....+|+. .|..++|+.-+..+ +..++.|++.+
T Consensus 28 ~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALV---IATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 379999999999999 7655667754 58888776544432 35566666654
No 311
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=45.20 E-value=1.1e+02 Score=23.86 Aligned_cols=59 Identities=5% Similarity=0.005 Sum_probs=42.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCCCchhhh--ccCCCCEEEEEEec
Q 016387 14 FDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVL-KDDTTLEEN--KVAENSFVVIMLTK 77 (390)
Q Consensus 14 ~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~GkiL-~D~~tL~d~--gI~~~s~I~v~v~k 77 (390)
..+-|+.+.||..|...|..+.+ + +..-|+.+...+ ..+.+++++ .-+++.+|+|.-..
T Consensus 25 ~KflV~~~~t~~~~v~~lRkrL~---l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys~ 86 (91)
T 3w1s_C 25 SVCKISMSQSFAMVILFLKRRLK---M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYCA 86 (91)
T ss_dssp -EEEEETTSBHHHHHHHHHHHHT---C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEEC
T ss_pred cEEEcCCCCCHHHHHHHHHHhhC---C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEeC
Confidence 34568899999999999999988 5 555555577654 446677665 34568888887653
No 312
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=44.62 E-value=52 Score=27.82 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=36.8
Q ss_pred hHHHHHHHhhhCHHHHHHHHHhHHHHHHHhcCCCCCCCCCccccccCCCCccccCCHHHHHH-----HHHHHHcCCCh
Q 016387 288 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREA-----IERLEAMGFDR 360 (390)
Q Consensus 288 l~~~l~~i~~~NPql~~~I~~n~e~fl~~l~~~~~~~~g~~~~~~~~~~~~~~~~t~ee~~a-----i~rL~~lGF~~ 360 (390)
|+.++.+|. .|++++...++|+.++.- -.||+||++| +.+|..+|-+-
T Consensus 37 LNkf~~sL~--~~~~RerF~aDpeA~l~~-----------------------~gLTeEEr~AV~~rD~~~L~~lGgn~ 89 (139)
T 1b4u_A 37 LNQFAMSLM--KAENRERFKADESAYLDE-----------------------WNLTPAAKAAVLARDYNAMIDEGGNV 89 (139)
T ss_dssp HHHHHHHTT--SHHHHHHHHHCHHHHHHT-----------------------TTCCHHHHHHHHHTCHHHHHHTTCCH
T ss_pred HHHHHHHHC--CHHHHHHHHhCHHHHHHH-----------------------cCCCHHHHHHHHcCCHHHHHHcCCCH
Confidence 367788886 499999999999888753 3469999999 56688888653
No 313
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=43.88 E-value=71 Score=25.61 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=40.2
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeecCCCCchhhh--cc-CCCCEEEEEEe
Q 016387 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQ-MLIYQGKVLKDDTTLEEN--KV-AENSFVVIMLT 76 (390)
Q Consensus 16 ieV~~~~TV~dLK~~I~~~~g~~~ip~~~Q-kLi~~GkiL~D~~tL~d~--gI-~~~s~I~v~v~ 76 (390)
+-|..+.||.+|...|....+ +.+++- -|+.++....-+.+|+++ .. .++.+|+|...
T Consensus 48 flVp~~~tv~~~~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhc---CCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEEe
Confidence 456678899999999999988 655553 554466544556777776 22 34778888753
No 314
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=43.12 E-value=83 Score=26.02 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=42.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCCeecCCCCchhhh--ccC-CCCEEEEEEec
Q 016387 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI-YQGKVLKDDTTLEEN--KVA-ENSFVVIMLTK 77 (390)
Q Consensus 16 ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi-~~GkiL~D~~tL~d~--gI~-~~s~I~v~v~k 77 (390)
+-|..+.||.+|...|..... +.+++--.+ .++....-+.+++++ .-+ ++.+|+|..+.
T Consensus 57 flVp~~~tv~qf~~~IRkrl~---L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEES
T ss_pred EEcCCCCEeeeehhhhHhhcC---CCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecC
Confidence 457889999999999999988 666664444 466555667777776 233 67789888764
No 315
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=43.10 E-value=12 Score=26.63 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 016387 358 FDRAIVLEVFFACNKNEELAANYL 381 (390)
Q Consensus 358 F~~~~~iqAy~ac~kne~~Aan~L 381 (390)
|.++.+.+|+..|++|...||..|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 467889999999999999998876
No 316
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=42.73 E-value=1.3e+02 Score=25.42 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=44.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe----EEE-----------------eCCeec-CCCCchhhhccCCCCE
Q 016387 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQ----MLI-----------------YQGKVL-KDDTTLEENKVAENSF 70 (390)
Q Consensus 13 ~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~Q----kLi-----------------~~GkiL-~D~~tL~d~gI~~~s~ 70 (390)
.+.|-...++|+.+|-..|.+.... .+...- ++| +.|+.- +|++||.+++..-|+.
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~--ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy 132 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPE--ARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY 132 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGG--GGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCcc--ccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE
Confidence 3667778999999999999877431 111111 223 334433 4679999999999999
Q ss_pred EEEEEecC
Q 016387 71 VVIMLTKN 78 (390)
Q Consensus 71 I~v~v~k~ 78 (390)
|.|-+..+
T Consensus 133 idvaI~pP 140 (143)
T 4a6q_A 133 LDIAITPP 140 (143)
T ss_dssp EEEEEECG
T ss_pred EEEEEeCC
Confidence 99988643
No 317
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=42.29 E-value=36 Score=32.33 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=38.2
Q ss_pred cccCCHHHHHHHHHHHHc----C----CChHHHHHHHHHhCCCHHHHHHHHhh
Q 016387 339 SIQVTPEEREAIERLEAM----G----FDRAIVLEVFFACNKNEELAANYLLD 383 (390)
Q Consensus 339 ~~~~t~ee~~ai~rL~~l----G----F~~~~~iqAy~ac~kne~~Aan~L~~ 383 (390)
.-.||+++.++|++|+++ | .|....++=+.||+.|++.|...|.+
T Consensus 32 ~~~lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~ 84 (320)
T 3q8g_A 32 PGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVE 84 (320)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467999999999988765 4 47788899999999999999998854
No 318
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=42.15 E-value=53 Score=33.47 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=43.8
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeC--C--eecCCCCchhh
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPA--AQQMLIYQ--G--KVLKDDTTLEE 62 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~--~~QkLi~~--G--kiL~D~~tL~d 62 (390)
|.+.|..++|....+.|+...|+.+|-..|....| +.. +..-|.+. + +.|+++..+.|
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg---L~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA---MEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT---CTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC---CCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 67899999999999999999999999999999999 543 34455442 2 22566555443
No 319
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=41.29 E-value=1.2e+02 Score=24.68 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=41.7
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCCCchhhh--cc-CCCCEEEEEEec
Q 016387 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY-QGKVLKDDTTLEEN--KV-AENSFVVIMLTK 77 (390)
Q Consensus 16 ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~-~GkiL~D~~tL~d~--gI-~~~s~I~v~v~k 77 (390)
+-|..+.||.+|...|....+ +.+++--.+| ++....-+.+++++ .- .++.+|+|....
T Consensus 51 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIM---LPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhC---cCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 447889999999999999988 6665544444 66545566777766 22 356788887754
No 320
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=40.66 E-value=1.4e+02 Score=23.83 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=54.0
Q ss_pred EEEEEEeCCC---cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---CeecCCCCchhhhccCCCCEEEEEE
Q 016387 2 MKIFVKTLKG---TSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ---GKVLKDDTTLEENKVAENSFVVIML 75 (390)
Q Consensus 2 MkI~Vktl~g---~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~---GkiL~D~~tL~d~gI~~~s~I~v~v 75 (390)
++|+|...+. ..+++.|..+.-|+-|--+|-++.... -...+--|-.- -..|+-..+|..|||..+..+++.-
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~-~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIA-QDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCS-SCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccc-cchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 5788887554 558899999999999999998777521 22334444332 2356778899999999999998875
Q ss_pred e
Q 016387 76 T 76 (390)
Q Consensus 76 ~ 76 (390)
.
T Consensus 99 ~ 99 (102)
T 2kmc_A 99 Q 99 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 321
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.45 E-value=52 Score=24.03 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=32.8
Q ss_pred HHHHHHHHc-cCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 161 GAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 161 ~~I~~i~~M-G~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
+.|.+.+++ | =+++.++.-|.++-+|.++||...+..
T Consensus 19 ~~i~qF~~iTg---~~~~~A~~~Le~~~WdLe~Al~~ff~~ 56 (66)
T 2dzl_A 19 VMINQFVLAAG---CAADQAKQLLQAAHWQFETALSTFFQE 56 (66)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHTTTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 789999997 6 799999999999999999999877643
No 322
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=40.36 E-value=14 Score=28.27 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 016387 359 DRAIVLEVFFACNKNEELAANYL 381 (390)
Q Consensus 359 ~~~~~iqAy~ac~kne~~Aan~L 381 (390)
.+..+.+||..|++|...||..|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 46777899999999999999876
No 323
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=39.92 E-value=1.3e+02 Score=24.56 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=43.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCchhhh--cc-CCCCEEEEEEec
Q 016387 16 VEVKPEDTVFDVKMKIETVQGSDVYPAAQ-QMLIYQGKVLKDDTTLEEN--KV-AENSFVVIMLTK 77 (390)
Q Consensus 16 ieV~~~~TV~dLK~~I~~~~g~~~ip~~~-QkLi~~GkiL~D~~tL~d~--gI-~~~s~I~v~v~k 77 (390)
+-|..+.||.+|...|....+ +.+++ .-|+.++....-+.+++++ .- .++.+|+|....
T Consensus 52 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~ 114 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQ---LEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSG 114 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHHHHHHhC---CCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 457889999999999999998 66665 4444577766667777776 23 357789887754
No 324
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=38.64 E-value=88 Score=25.71 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=46.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHH-hCCC----CCCCCCeEEEeCCeecC--CCCchhhhccCCCCEEEEE
Q 016387 14 FDVEVKPEDTVFDVKMKIETV-QGSD----VYPAAQQMLIYQGKVLK--DDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 14 ~~ieV~~~~TV~dLK~~I~~~-~g~~----~ip~~~QkLi~~GkiL~--D~~tL~d~gI~~~s~I~v~ 74 (390)
+.+-|.++.+..+|-+.+-.- ++.+ .+..++-.+..+|+... .+++|.+.||..++.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 678899999999998877533 3311 14566668889999985 4689999999999988765
No 325
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=37.29 E-value=55 Score=26.28 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHc----CCChHHHHHHHHHhCCCHHHHHHHHhhc
Q 016387 343 TPEEREAIERLEAM----GFDRAIVLEVFFACNKNEELAANYLLDH 384 (390)
Q Consensus 343 t~ee~~ai~rL~~l----GF~~~~~iqAy~ac~kne~~Aan~L~~~ 384 (390)
+||--++|++|..| .-|--.|.|||+-..++.+.|..||+..
T Consensus 7 ~~~vg~~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~ 52 (111)
T 3k6g_A 7 QPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASG 52 (111)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred CCcccHHHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCC
Confidence 44444557666655 4488899999999999999999999875
No 326
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=35.81 E-value=31 Score=27.09 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=23.3
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHH
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVK 28 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK 28 (390)
|++|+|...+|+.+.|++....||.+.=
T Consensus 6 m~~V~~~~~~g~~~~v~~~~g~tLL~aa 33 (108)
T 2bt6_A 6 KITVHFINRDGETLTTKGKIGDSLLDVV 33 (108)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHH
Confidence 5788998788998899999999987653
No 327
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=34.75 E-value=76 Score=22.63 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=36.3
Q ss_pred chHHHHHHHHHc-cCCCCCHHHHHHHHHHHhCChHHHHHHHHh----C-CCCc
Q 016387 158 NLEGAIQQILDM-GGGTWDRDTVVRALRAAYNNPERAVEYLYS----G-IPEQ 204 (390)
Q Consensus 158 ~~e~~I~~i~~M-G~~~f~r~qv~~ALrAafnNpdrAveyL~~----G-IP~~ 204 (390)
+.+++|..+... | -..+=+...|.-.-.|.+||+.-... | ||++
T Consensus 6 ~q~~mv~~~s~~Tg---mn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 6 EQQEMLQAFSTQSG---MNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCSCGG
T ss_pred HHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHH
Confidence 457888888887 7 88999999999999999999965432 4 9875
No 328
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.27 E-value=94 Score=23.50 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=32.5
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
....+++|-|.- |--|-.-...||+|+.+|...||-+|..-
T Consensus 24 ~q~lLnQLrEIT-GiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 24 QQTFLNQLREIT-GINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHHS-CCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 356789999983 22366666789999999999999999754
No 329
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=33.47 E-value=1.1e+02 Score=24.26 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHhCCCCCCC--CCeEEE--eCCeecCCCCchhhhccCCCCEEEEEEec
Q 016387 22 DTVFDVKMKIETVQGSDVYPA--AQQMLI--YQGKVLKDDTTLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 22 ~TV~dLK~~I~~~~g~~~ip~--~~QkLi--~~GkiL~D~~tL~d~gI~~~s~I~v~v~k 77 (390)
.+..+|+.|...+++ ++. ...+|+ ..|..++|+.-+..+ . ..++.+++.+
T Consensus 37 ~SL~EL~~K~~~~l~---l~~~~~~~~lvLeeDGT~VddEeYF~tL--p-~nT~lmvL~~ 90 (100)
T 1f2r_I 37 SSLEELRSKACELLA---IDKSLTPITLVLAEDGTIVDDDDYFLCL--P-SNTKFVALAC 90 (100)
T ss_dssp SSHHHHHHHHHHHHC---CCGGGCSCEEEESSSCCBCCSSSSSSSS--C-SCCEEEEECS
T ss_pred CCHHHHHHHHHHHhc---cCCCCCceEEEEeeCCcEEechhHhhcC--C-CCCEEEEEcC
Confidence 379999999999999 654 235554 469998877554432 2 4455555543
No 330
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=33.39 E-value=93 Score=21.60 Aligned_cols=38 Identities=29% Similarity=0.310 Sum_probs=32.7
Q ss_pred HHHHHHHHHc--cCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 160 EGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 160 e~~I~~i~~M--G~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
|..|++.-.. | -+|+-++|-|+-..=|++.||.-|++.
T Consensus 10 e~li~q~q~VLqg---ksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 10 EELISQAQVVLQG---KSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHHHHSTT---CCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcC---CcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 6777776654 7 999999999999999999999999875
No 331
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=33.37 E-value=21 Score=25.64 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=24.3
Q ss_pred hHHhhCCHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHhHH
Q 016387 265 LDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQA 311 (390)
Q Consensus 265 ~~~L~~~P~~~~lrq~vq~NP~ll~~~l~~i~~~NPql~~~I~~n~e 311 (390)
++.|+++|.+..+. +||++++ .|++|. +||+-++-...||.
T Consensus 5 ~~kl~~dPe~~~~m----~dP~~~~-~lq~i~-~NP~~~~~~~~dP~ 45 (62)
T 2lnm_A 5 ISKIMENPDVAMAF----QNPRVQA-ALMECS-ENPMNIMKYQNDKE 45 (62)
T ss_dssp HHHHTTSHHHHHHT----TSHHHHH-HHHHHT-TCGGGHHHHTTCHH
T ss_pred HHHHHcChHHHHHc----CCHHHHH-HHHHHH-HCHHHHHHHHhChH
Confidence 45667777754332 5777654 555554 37776666655554
No 332
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=33.01 E-value=38 Score=29.46 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=36.5
Q ss_pred cchHHHHHHH-HHccCCCCCH---HHHHHHHHHHhCC-hHHHHHHHHhC--CCCc
Q 016387 157 NNLEGAIQQI-LDMGGGTWDR---DTVVRALRAAYNN-PERAVEYLYSG--IPEQ 204 (390)
Q Consensus 157 ~~~e~~I~~i-~~MG~~~f~r---~qv~~ALrAafnN-pdrAveyL~~G--IP~~ 204 (390)
+.-+..|+.| .+-| |.+ ++|+.||+..-.+ |..=++||..| ||.+
T Consensus 61 s~~~~Lv~~l~~e~G---i~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N 112 (168)
T 3cz6_A 61 SQAEKLVQDLCDETG---IRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPN 112 (168)
T ss_dssp TCHHHHHHHHHHHHC---BCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTT
T ss_pred hhHHHHHHHHHHHhC---cccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCC
Confidence 3457889999 7789 976 5777899988889 88888999999 6765
No 333
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=32.02 E-value=98 Score=32.54 Aligned_cols=46 Identities=11% Similarity=0.001 Sum_probs=39.1
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY 49 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~ 49 (390)
|.+.|..++|....++|+...|+.+|-..|+...|. ...+..-|.|
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL--~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISL--KDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC--SSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC--cccccceeEE
Confidence 678999999999999999999999999999999994 2345566655
No 334
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=31.12 E-value=41 Score=26.44 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=22.7
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHH
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVK 28 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK 28 (390)
|++|+|...+|+.+.|++....||.+.=
T Consensus 5 m~~v~~~~~~g~~~~~~~~~g~tlL~aa 32 (109)
T 2y5c_A 5 VVNVVFVDRSGQRIPVSGRVGDNVLHLA 32 (109)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred cEEEEEEcCCCCEEEEEECCCCcHHHHH
Confidence 3578887788999899999999998753
No 335
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=29.86 E-value=36 Score=27.17 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=20.0
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHH
Q 016387 162 AIQQILDMGGGTWDRDTVVRALRAA 186 (390)
Q Consensus 162 ~I~~i~~MG~~~f~r~qv~~ALrAa 186 (390)
.|++.++|| |++..|.++++--
T Consensus 30 vV~~alemG---f~~~~V~~~v~~k 51 (104)
T 2kna_A 30 MVQEAIRMG---FSFKDIKKIMEEK 51 (104)
T ss_dssp HHHHHHHTT---CCHHHHHHHHHHH
T ss_pred HHHHHHHcC---ccHHHHHHHHHHH
Confidence 799999999 9999999999763
No 336
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=29.76 E-value=33 Score=31.06 Aligned_cols=26 Identities=8% Similarity=0.239 Sum_probs=23.5
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHHh
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAAY 187 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAaf 187 (390)
.++++.-|+.+| |.+.++.+|++...
T Consensus 164 ~~ea~~AL~~LG---y~~~ea~~av~~~~ 189 (212)
T 2ztd_A 164 RSPVVEALVGLG---FAAKQAEEATDTVL 189 (212)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 468999999999 99999999998873
No 337
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=29.55 E-value=74 Score=21.55 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=29.9
Q ss_pred chHHHHHHHHHc-cCCCCC-HHHHHHHHHHHhCChHHHHH
Q 016387 158 NLEGAIQQILDM-GGGTWD-RDTVVRALRAAYNNPERAVE 195 (390)
Q Consensus 158 ~~e~~I~~i~~M-G~~~f~-r~qv~~ALrAafnNpdrAve 195 (390)
+.++.|.+..++ | -+ -++++.=|.+...|.+.||.
T Consensus 4 d~de~ia~F~~iTG---~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 4 DREMILADFQACTG---IENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp CHHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHHT
T ss_pred cHHHHHHHHHHHHC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 568899999999 6 66 49999999999999999974
No 338
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=29.32 E-value=44 Score=27.48 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=23.9
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHH
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVK 28 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK 28 (390)
|.+|+|...+|....|++....||.+.-
T Consensus 21 M~~Vt~~~~~G~~~~v~~~~G~tLL~aa 48 (126)
T 3hui_A 21 MAKINFVDHTGETRTVEVEEGATVMEAA 48 (126)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHH
T ss_pred ceEEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 5789999889988899999999998754
No 339
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.99 E-value=1.5e+02 Score=21.47 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=36.3
Q ss_pred cchHHHHHHHHHc--cCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 157 NNLEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 157 ~~~e~~I~~i~~M--G~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
++++.+|.++.+| - ++++.+..-|+-. +|.+.-+|=++.|
T Consensus 11 ~ql~~mv~~V~~mfP~---vp~~~I~~DL~~T-gsVe~TienILeG 52 (61)
T 2ekf_A 11 VQLATLAQRVKEVLPH---VPLGVIQRDLAKT-GCVDLTITNLLEG 52 (61)
T ss_dssp CCHHHHHHHHHHHCSS---SCHHHHHHHHHTS-CCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCC---CCHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 5678999999999 5 7999999999876 5999999999999
No 340
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=28.39 E-value=19 Score=25.73 Aligned_cols=18 Identities=22% Similarity=0.586 Sum_probs=8.2
Q ss_pred HHHHHHHhCccchHHHHH
Q 016387 276 VLRAMVQANPQLLQPMLQ 293 (390)
Q Consensus 276 ~lrq~vq~NP~ll~~~l~ 293 (390)
++-.++++||+++-.+|.
T Consensus 28 qvl~ILksNPqLMAAfIK 45 (59)
T 1kbh_B 28 QVLNILKSNPQLMAAFIK 45 (59)
T ss_dssp HHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHH
Confidence 334444445544444444
No 341
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.85 E-value=1.2e+02 Score=21.63 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=36.2
Q ss_pred cchHHHHHHHHHc--cCCCCCHHHHHHHHHHHhCChHHHHHHHHhC
Q 016387 157 NNLEGAIQQILDM--GGGTWDRDTVVRALRAAYNNPERAVEYLYSG 200 (390)
Q Consensus 157 ~~~e~~I~~i~~M--G~~~f~r~qv~~ALrAafnNpdrAveyL~~G 200 (390)
+..+.+|+++.+| - ++++.+..-|+-.- |.+.-+|=++.|
T Consensus 11 ~q~~~mv~~V~~mfP~---vp~~~I~~DL~~Tg-sVe~TienILeG 52 (58)
T 2ejs_A 11 SQLNAMAHQIQEMFPQ---VPYHLVLQDLQLTR-SVEITTDNILEG 52 (58)
T ss_dssp CHHHHHHHHHHHHCCS---SCHHHHHHHHHHHC-SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCC---CCHHHHHHHHHHhC-CHHHHHHHHHhc
Confidence 5678999999999 5 79999999998866 999999999988
No 342
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=27.74 E-value=1.4e+02 Score=21.15 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHH
Q 016387 341 QVTPEEREAIERLEAM-GFDRAIVLEVFFACNKNEELAANY 380 (390)
Q Consensus 341 ~~t~ee~~ai~rL~~l-GF~~~~~iqAy~ac~kne~~Aan~ 380 (390)
.|+++...-|.+|... |-..+-....+..|++|-+.|..-
T Consensus 2 ~ls~~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 42 (59)
T 1oai_A 2 TLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQA 42 (59)
T ss_dssp CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4788888888888876 889999999999999999998864
No 343
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=27.41 E-value=54 Score=28.26 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=23.0
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKM 29 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~ 29 (390)
|+|+++ ++|+.+.+++++..|+.++-.
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 678886 789999999999999988754
No 344
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=27.30 E-value=2.3e+02 Score=26.53 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=46.1
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eC----CeecCCCCchhhh----ccCCCCEEEE
Q 016387 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLI--YQ----GKVLKDDTTLEEN----KVAENSFVVI 73 (390)
Q Consensus 4 I~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi--~~----GkiL~D~~tL~d~----gI~~~s~I~v 73 (390)
|+|-..+|....|.|+++.|+.||-..+..+.+. .....--|+ |. -+.|.|...|-+. .......+++
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~--~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHC--GYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCC--CCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCC--CCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 5555568889999999999999999988888773 222333332 21 2778888766554 4445555544
Q ss_pred E
Q 016387 74 M 74 (390)
Q Consensus 74 ~ 74 (390)
.
T Consensus 112 ~ 112 (281)
T 4gmv_A 112 M 112 (281)
T ss_dssp E
T ss_pred E
Confidence 4
No 345
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=27.22 E-value=1.3e+02 Score=27.78 Aligned_cols=57 Identities=18% Similarity=0.086 Sum_probs=37.3
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---C----CeecCCCCchhhh
Q 016387 4 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIY---Q----GKVLKDDTTLEEN 63 (390)
Q Consensus 4 I~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~---~----GkiL~D~~tL~d~ 63 (390)
|+|-.-+|....|.|+++.|+.+|-..+..+.+ +....-..+| . -+.|.|...+-+.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~---~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSH---SVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC----------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcC---CCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 555567888999999999999999988888766 3222222222 1 3678887665544
No 346
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=27.07 E-value=19 Score=27.68 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 016387 358 FDRAIVLEVFFACNKNEELAANYL 381 (390)
Q Consensus 358 F~~~~~iqAy~ac~kne~~Aan~L 381 (390)
|.+..+.++|..|++|...||..|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 457888999999999999999876
No 347
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=26.90 E-value=99 Score=24.92 Aligned_cols=71 Identities=14% Similarity=0.238 Sum_probs=45.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-------CCeEEEe---CCee--cCCC-CchhhhccCCCC
Q 016387 3 KIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPA-------AQQMLIY---QGKV--LKDD-TTLEENKVAENS 69 (390)
Q Consensus 3 kI~Vktl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~-------~~QkLi~---~Gki--L~D~-~tL~d~gI~~~s 69 (390)
.|.+=..+|-.+.++++.+.|+.+||+.+.++-+. +|. +.-.+.. .|.+ |.|+ +.|.++..- -.
T Consensus 21 ~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~--~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~p 97 (108)
T 2v1y_A 21 LVECLLPNGMIVTLECLREATLITIKHELFKEARK--YPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QP 97 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGG--STTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SS
T ss_pred EEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHh--CchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ce
Confidence 34455568988999999999999999999877432 222 1112221 2444 7564 788887765 34
Q ss_pred EEEEEEe
Q 016387 70 FVVIMLT 76 (390)
Q Consensus 70 ~I~v~v~ 76 (390)
.+.|+-+
T Consensus 98 iLklver 104 (108)
T 2v1y_A 98 FLKVIEP 104 (108)
T ss_dssp EEEEECC
T ss_pred EEEEEee
Confidence 5555543
No 348
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=26.53 E-value=55 Score=33.55 Aligned_cols=70 Identities=13% Similarity=0.302 Sum_probs=51.8
Q ss_pred EEEEEeCC--CcEEE----EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC----C--eecC-CCCchhhh--ccCC
Q 016387 3 KIFVKTLK--GTSFD----VEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQ----G--KVLK-DDTTLEEN--KVAE 67 (390)
Q Consensus 3 kI~Vktl~--g~~~~----ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~----G--kiL~-D~~tL~d~--gI~~ 67 (390)
-|++|..+ .+++. +-|+..++|.+|-..|.+..| +|++.--.+|. + ..|+ .+.++.++ .|.+
T Consensus 132 LlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g---~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~ 208 (530)
T 2ylm_A 132 MLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAG---FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMD 208 (530)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHT---CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCT
T ss_pred EEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEecCCCceeEcccccccHHHHHhcccC
Confidence 45666543 23333 567889999999999999999 88886655563 2 3467 47799999 9999
Q ss_pred CCEEEEEE
Q 016387 68 NSFVVIML 75 (390)
Q Consensus 68 ~s~I~v~v 75 (390)
|+.|++=.
T Consensus 209 GdII~fQ~ 216 (530)
T 2ylm_A 209 GDIIVFQK 216 (530)
T ss_dssp TEEEEEEE
T ss_pred CCEEEEEe
Confidence 99876654
No 349
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=26.49 E-value=1.6e+02 Score=25.36 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=37.4
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCC---------CCCeEEEeCCeecCCCCchhhhccCCCCEEEEE
Q 016387 15 DVEVKPEDTVFDVKMKIETVQGSDVYP---------AAQQMLIYQGKVLKDDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 15 ~ieV~~~~TV~dLK~~I~~~~g~~~ip---------~~~QkLi~~GkiL~D~~tL~d~gI~~~s~I~v~ 74 (390)
.++++. .||.+|.+.+...+.. +. .....+..||+......- .+.-|++|+.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~--l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPA--LKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGG--GHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChh--hhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEE
Confidence 456665 8999999999877320 10 134567788888765322 24468999998876
No 350
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=26.44 E-value=80 Score=29.04 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=36.6
Q ss_pred cccCCHHHHHHHHHHHHc----C----CChHHHHHHHHHhCCCHHHHHHHHhh
Q 016387 339 SIQVTPEEREAIERLEAM----G----FDRAIVLEVFFACNKNEELAANYLLD 383 (390)
Q Consensus 339 ~~~~t~ee~~ai~rL~~l----G----F~~~~~iqAy~ac~kne~~Aan~L~~ 383 (390)
.-++|+++.++|+.|.+. | .+....++=+.||+.|++.|...|.+
T Consensus 23 ~~~l~~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~ 75 (296)
T 1aua_A 23 PGNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFEN 75 (296)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Confidence 346899999998888653 4 37788889999999999999998754
No 351
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=26.31 E-value=35 Score=30.52 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=23.2
Q ss_pred hHHHHHHHHHccCCCCCHHHHHHHHHHH
Q 016387 159 LEGAIQQILDMGGGTWDRDTVVRALRAA 186 (390)
Q Consensus 159 ~e~~I~~i~~MG~~~f~r~qv~~ALrAa 186 (390)
.++++.-|+.+| |.+.++.+|++..
T Consensus 160 ~~ea~~AL~~LG---y~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALG---YKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 478999999999 9999999999986
No 352
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=26.24 E-value=62 Score=29.24 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=40.1
Q ss_pred cccccCcchHHHHHHHHHccCCCCCHHHHHHHHHHHhCChHHHHHHHH
Q 016387 151 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY 198 (390)
Q Consensus 151 s~l~~g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNpdrAveyL~ 198 (390)
.+|+ |..+++.+..|...| -.+++++..||+++.--...|+++|+
T Consensus 159 nsFi-g~ar~qLl~aL~~l~--ll~~~~~~~a~~~~~~~~~~~~~~~~ 203 (214)
T 3kvh_A 159 NAFV-STAKCQLLFALKVLN--MMPEEKLVEALAAATEKQKKALEKLL 203 (214)
T ss_dssp SCBC-TTHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhH-HHHHHHHHHHHHHcC--CCCHHHHHHHHHhccCcchhHHHhhC
Confidence 4455 888999999999999 33999999999999999999999996
No 353
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=25.74 E-value=62 Score=27.98 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=23.6
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMK 30 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~ 30 (390)
|+|+|+ ++|+.+.+++++..||.++-..
T Consensus 4 ~~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 4 AHIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 677776 6899999999999999987654
No 354
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=25.59 E-value=30 Score=24.47 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHhCChHHHHHHHHhCCC
Q 016387 174 WDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (390)
Q Consensus 174 f~r~qv~~ALrAafnNpdrAveyL~~GIP 202 (390)
|+|+-+.+||+.. +|..+|.+.| ||.
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L--GIs 46 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL--GVS 46 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT--TSC
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh--CCC
Confidence 7899999999999 9999999987 665
No 355
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=25.16 E-value=1.6e+02 Score=21.06 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhhc
Q 016387 341 QVTPEEREAIERLEAM--GFDRAIVLEVFFACNKNEELAANYLLDH 384 (390)
Q Consensus 341 ~~t~ee~~ai~rL~~l--GF~~~~~iqAy~ac~kne~~Aan~L~~~ 384 (390)
.++..=...++++.+| -++++.+..-+..+ +|++.+++.+|+.
T Consensus 12 ~~~sql~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 12 YFQGQLNAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 3444444558899988 46899999999988 9999999998874
No 356
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=24.96 E-value=79 Score=23.20 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=26.6
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHhC
Q 016387 341 QVTPEEREAIERLEA-MGFDRAIVLEVFFACN 371 (390)
Q Consensus 341 ~~t~ee~~ai~rL~~-lGF~~~~~iqAy~ac~ 371 (390)
.+|+-|++.|..+.. .||+.+.+..|+.-|-
T Consensus 17 ~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~ 48 (78)
T 2zc2_A 17 MLSPFELEDLQKTVSDDKTDPDLVRSALREAV 48 (78)
T ss_dssp CCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 578999999988775 6999999999998883
No 357
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=24.81 E-value=63 Score=27.85 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=23.1
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMK 30 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~ 30 (390)
|.|+|+ ++|+.+.+++++..||.++-..
T Consensus 4 ~~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 4 KIITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 567776 6899999999999999987654
No 358
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=24.47 E-value=56 Score=24.69 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=28.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CCCeEEEeCC
Q 016387 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYP-----AAQQMLIYQG 51 (390)
Q Consensus 13 ~~~ieV~~~~TV~dLK~~I~~~~g~~~ip-----~~~QkLi~~G 51 (390)
.+.|-|.++.+..+|..+|..+.+ .. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~---~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKIS---NTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTT---TTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHc---ccccccccceeEEEEEc
Confidence 578899999999999999999988 43 2556676654
No 359
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=23.99 E-value=1.2e+02 Score=24.13 Aligned_cols=54 Identities=6% Similarity=0.084 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee--cCCCC-chhhhccCCCCEEEEEEec
Q 016387 22 DTVFDVKMKIETVQGSDVYPAAQQMLIYQG---KV--LKDDT-TLEENKVAENSFVVIMLTK 77 (390)
Q Consensus 22 ~TV~dLK~~I~~~~g~~~ip~~~QkLi~~G---ki--L~D~~-tL~d~gI~~~s~I~v~v~k 77 (390)
.|...|+.+|...+.. +......|.|.. -. +.++. ....+.......+-|.++.
T Consensus 42 ~s~~~L~~~V~~lFp~--l~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~~~~lRlyVke 101 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 101 (102)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred ccHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEc
Confidence 4799999999999752 445567777753 22 23322 2222333335677777764
No 360
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=23.61 E-value=42 Score=25.52 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHhCChHHHHHHHHhCCC
Q 016387 174 WDRDTVVRALRAAYNNPERAVEYLYSGIP 202 (390)
Q Consensus 174 f~r~qv~~ALrAafnNpdrAveyL~~GIP 202 (390)
|+|+-+.+||+..-+|..+|.+.| ||.
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~L--GIS 67 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRL--NMH 67 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH--TSC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh--CCC
Confidence 788889999999999999999988 654
No 361
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=23.51 E-value=81 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=23.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 016387 3 KIFVKTLKGTSFDVEVKPEDTVFDVKM 29 (390)
Q Consensus 3 kI~Vktl~g~~~~ieV~~~~TV~dLK~ 29 (390)
+|+|...+|+.+.|++....||.+.-.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 689999999999999999999987543
No 362
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=23.46 E-value=36 Score=24.03 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 016387 358 FDRAIVLEVFFACNKNEELAANYL 381 (390)
Q Consensus 358 F~~~~~iqAy~ac~kne~~Aan~L 381 (390)
|.+..+.+++..| +|...||..|
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh
Confidence 3467778899999 9999999876
No 363
>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.30 E-value=90 Score=21.21 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=21.6
Q ss_pred HHHHHH-HHHHHHcCCChHHHHHHHHHhCC
Q 016387 344 PEEREA-IERLEAMGFDRAIVLEVFFACNK 372 (390)
Q Consensus 344 ~ee~~a-i~rL~~lGF~~~~~iqAy~ac~k 372 (390)
.|.++- |-||+.||.+-+.+..-|..--.
T Consensus 4 DEvkDmEiAkLMSLGl~id~A~~~Ye~gi~ 33 (47)
T 1pgy_A 4 DEVKDMEIARLMSLGLSIEEATEFYENDVT 33 (47)
T ss_dssp HHHHHHHHHHHHHHCCCSHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHccCChhhHHHHHHcCch
Confidence 455555 99999999998888877765433
No 364
>3onq_A Regulator of polyketide synthase expression; structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Bifidobacterium adolescentis}
Probab=23.28 E-value=48 Score=30.59 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhc
Q 016387 362 IVLEVFFACNKNEELAANYLLDH 384 (390)
Q Consensus 362 ~~iqAy~ac~kne~~Aan~L~~~ 384 (390)
..+++|+.|++|...||..|+=|
T Consensus 200 ~TL~~yl~~~~~~~~tA~~L~iH 222 (262)
T 3onq_A 200 LTVSTFLKYGSSLENTAKELNVH 222 (262)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTSC
T ss_pred HHHHHHHHcCCCHHHHHHHhCCC
Confidence 57899999999999999999744
No 365
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=23.09 E-value=83 Score=25.47 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCccchHHHHHHHhhhCHHHHHHH
Q 016387 274 FQVLRAMVQANPQLLQPMLQELGKQNPQLVRLI 306 (390)
Q Consensus 274 ~~~lrq~vq~NP~ll~~~l~~i~~~NPql~~~I 306 (390)
+.+|++++..||+.... |-.+||||.-.|
T Consensus 58 L~qmK~~~~~nP~~a~~----LL~q~PQLAyAl 86 (109)
T 2l9b_A 58 LQKFQEWTRAHPEDAAS----LLELCPQLSFVT 86 (109)
T ss_dssp HHHHHHHHHHCHHHHHH----HHHHCHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHH----HHHHCchHHHHH
Confidence 45889999999986554 445688887655
No 366
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=21.95 E-value=97 Score=23.92 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=34.2
Q ss_pred cccCCHHHHHHHHHHHHcC-C-ChHHHHHHHHHhCCCHHHHHHHH
Q 016387 339 SIQVTPEEREAIERLEAMG-F-DRAIVLEVFFACNKNEELAANYL 381 (390)
Q Consensus 339 ~~~~t~ee~~ai~rL~~lG-F-~~~~~iqAy~ac~kne~~Aan~L 381 (390)
.|.|+++-..-|+.+++-| | ++..||+..+-.....+.....|
T Consensus 7 sIsL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~~l~~L 51 (88)
T 3kxe_C 7 SVVLGDHFQAFIDSQVADGRYGSASEVIRAGLRLLEENEAKLAAL 51 (88)
T ss_dssp EECCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 5889999999999999987 7 89999999887776665544443
No 367
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=21.94 E-value=78 Score=24.15 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=22.8
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMK 30 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~ 30 (390)
++|+|...++....+++....||.+.-..
T Consensus 5 ~~v~~~~~~~~~~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 5 HTITAVTEDGESLRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEEETTTEEEEEEEESCCTHHHHHHH
T ss_pred EEEEEEecCCCcEEEEeCCCChHHHHHHH
Confidence 57788776777888999999999876543
No 368
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=21.94 E-value=1.1e+02 Score=32.50 Aligned_cols=61 Identities=10% Similarity=0.186 Sum_probs=40.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC--------CeEEEeCCe--ec----C--CCCchhhhccCCCCEEEEE
Q 016387 13 SFDVEVKPEDTVFDVKMKIETVQGSDVYPAA--------QQMLIYQGK--VL----K--DDTTLEENKVAENSFVVIM 74 (390)
Q Consensus 13 ~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~--------~QkLi~~Gk--iL----~--D~~tL~d~gI~~~s~I~v~ 74 (390)
...+.++.+.|+.+|-+.|+.+.... +..- ..+++|... .| + -+++|+++||++|+.|+|.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQ-MKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTC-CSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccC-cccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 35577888889999988888853310 2111 246666532 21 1 2578999999999998775
No 369
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=21.67 E-value=80 Score=27.39 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=18.9
Q ss_pred ccccCCHHHHHHHHHHHHcCC
Q 016387 338 QSIQVTPEEREAIERLEAMGF 358 (390)
Q Consensus 338 ~~~~~t~ee~~ai~rL~~lGF 358 (390)
..+.+++||.++++.|.++|.
T Consensus 123 ~~V~v~~ed~~~lk~L~~~Gv 143 (168)
T 3eye_A 123 SKVYVDDQDLTDLRFIKQRGV 143 (168)
T ss_dssp TTEEECHHHHHHHHHHHHTTC
T ss_pred ccEeeCHHHHHHHHHHHHCCC
Confidence 357899999999999999995
No 370
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.66 E-value=2.1e+02 Score=20.44 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=32.1
Q ss_pred HHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 016387 348 EAIERLEAM--GFDRAIVLEVFFACNKNEELAANYLLDHMH 386 (390)
Q Consensus 348 ~ai~rL~~l--GF~~~~~iqAy~ac~kne~~Aan~L~~~~~ 386 (390)
..++++.+| -++++.+..-+.-++ |++++.+.+|+...
T Consensus 15 ~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGrl 54 (58)
T 2ejs_A 15 AMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGRI 54 (58)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcCC
Confidence 348999998 468999999998888 99999999998653
No 371
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=21.56 E-value=78 Score=27.18 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.3
Q ss_pred EEEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 016387 2 MKIFVKTLKGTSFDVEVKPEDTVFDVKMK 30 (390)
Q Consensus 2 MkI~Vktl~g~~~~ieV~~~~TV~dLK~~ 30 (390)
|.|+|+ ++|+.+.+++++..||.++-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 677776 6899999999999999887654
No 372
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=21.46 E-value=1.9e+02 Score=27.72 Aligned_cols=32 Identities=13% Similarity=0.359 Sum_probs=22.6
Q ss_pred cccCCHHHHHH-HHHHHHcCCChHHHHHHHHHh
Q 016387 339 SIQVTPEEREA-IERLEAMGFDRAIVLEVFFAC 370 (390)
Q Consensus 339 ~~~~t~ee~~a-i~rL~~lGF~~~~~iqAy~ac 370 (390)
....+.+.+.. |+-|+.+||+++.+...+..|
T Consensus 105 lL~~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~ 137 (335)
T 4fp9_B 105 LLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCC 137 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCTTTTHHHHHHHC
T ss_pred hccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34455555444 999999999888777666655
No 373
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=21.37 E-value=1.2e+02 Score=23.21 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=23.3
Q ss_pred CEEEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 016387 1 MMKIFVKTLKGTSFDVEVKPEDTVFDVKM 29 (390)
Q Consensus 1 mMkI~Vktl~g~~~~ieV~~~~TV~dLK~ 29 (390)
+++|+|...+|+.+.+++....||.+.-.
T Consensus 3 ~~~v~~~~~~g~~~~~~~~~g~tlL~a~~ 31 (103)
T 2wlb_A 3 GIKVFFVTPEGREIMIEGNEGDSILDLAH 31 (103)
T ss_dssp CEEEEEECTTCCEEEEEECTTCBHHHHHH
T ss_pred ceEEEEEeCCCCEEEEEECCCCHHHHHHH
Confidence 36788887788888899999999987643
No 374
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=21.24 E-value=46 Score=26.14 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 016387 359 DRAIVLEVFFACNKNEELAANYL 381 (390)
Q Consensus 359 ~~~~~iqAy~ac~kne~~Aan~L 381 (390)
.+..+.+||..|++|...||..|
T Consensus 59 Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 59 EQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 46778899999999999999876
No 375
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=20.80 E-value=2.4e+02 Score=22.48 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=34.8
Q ss_pred EEEEe-CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee
Q 016387 4 IFVKT-LKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKV 53 (390)
Q Consensus 4 I~Vkt-l~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLi~~Gki 53 (390)
|.||. ..|.++.|.+....+..+|..|+...+| ...-|.|-...
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fG------q~ldL~y~n~E 53 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG------QSMDLHYTNNE 53 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHS------SCEEEEECSSS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhC------CeeeEEEecce
Confidence 44443 3678899999999999999999999999 36677776543
No 376
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=20.72 E-value=2e+02 Score=22.37 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=34.1
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeE-EEeCCeec
Q 016387 11 GTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQM-LIYQGKVL 54 (390)
Q Consensus 11 g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~Qk-Li~~GkiL 54 (390)
...+.+.|+...|=.++|+.|+..++ +.+.... ++..||.=
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~---VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFE---VEVEVVNTLVVKGKVK 68 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSC---CCCCEEEEEEECCCBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceEEEEEEEeCCcee
Confidence 36899999999999999999999999 7777764 46777643
No 377
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=20.49 E-value=1.4e+02 Score=23.97 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=31.8
Q ss_pred HHHHHHHH-ccCCCCCHHHHHHHHHHHhCChHHHHHHHHhCC
Q 016387 161 GAIQQILD-MGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI 201 (390)
Q Consensus 161 ~~I~~i~~-MG~~~f~r~qv~~ALrAafnNpdrAveyL~~GI 201 (390)
+.|.+||+ .. -+--.|.+||-...++..+|-.||++|+
T Consensus 15 ~~i~~lMeef~---~DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 15 KIIRQLMEKFN---LDLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHh---hhHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 44555554 57 7999999999999999999999999984
No 378
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=20.28 E-value=48 Score=30.82 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=39.8
Q ss_pred HHhhCCHHHHHHHHHHHhCcc--chHHHHHHHhhhCHHHHHHHHHhHHHHHHHhcC
Q 016387 266 DFLRNSPQFQVLRAMVQANPQ--LLQPMLQELGKQNPQLVRLIQEHQADFLRLINE 319 (390)
Q Consensus 266 ~~L~~~P~~~~lrq~vq~NP~--ll~~~l~~i~~~NPql~~~I~~n~e~fl~~l~~ 319 (390)
+||++.-+..+|+++++.++. -|.-=+..|..-||+|+..|..||..++.++..
T Consensus 20 ~Fl~~~~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~ 75 (279)
T 1ltl_A 20 EFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQ 75 (279)
T ss_dssp HHTTSHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHH
Confidence 577664467888888855444 233234667778999999999999999999754
Done!