BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016389
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Query: 206 DIGILVVNCSLFNPTPSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNW 265
DI LVV + P + +V LR ++R L GC AG A+ LAKDL + +
Sbjct: 147 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 206
Query: 266 NTYAVVVSTENITQNWYFGNKKS---MLIPNCLFRVGCSAVLLSNKRKDRRQAKYRLVHI 322
+VV+ E +T ++ G + L+ LF G +AV++ D + + +V
Sbjct: 207 GARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSA 265
Query: 323 VRTHKGADDKAFRCVYQEQDDQGKTG 348
+T D A + E+ G G
Sbjct: 266 AQTIIPESDHALNMRFTERRLDGVLG 291
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Query: 206 DIGILVVNCSLFNPTPSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNW 265
DI LVV + P + +V LR ++R L GC AG A+ LAKDL + +
Sbjct: 117 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 176
Query: 266 NTYAVVVSTENITQNWYFGNKKS---MLIPNCLFRVGCSAVLLSNKRKDRRQAKYRLVHI 322
+VV+ E +T ++ G + L+ LF G +AV++ D + + +V
Sbjct: 177 GARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSA 235
Query: 323 VRTHKGADDKAFRCVYQEQDDQGKTG 348
+T D A + E+ G G
Sbjct: 236 AQTIIPESDHALNMRFTERRLDGVLG 261
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%)
Query: 206 DIGILVVNCSLFNPTPSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNW 265
+IG+LV+ S P + IV + L +I + MGC+A + A+ A + ++ +
Sbjct: 134 EIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHP 193
Query: 266 NTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGCSAVLL 305
A+VV E + N F + + ++ + LF GC+A+++
Sbjct: 194 AMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVI 233
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%)
Query: 206 DIGILVVNCSLFNPTPSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNW 265
+IG+LV+ S P + IV + L +I + MGC+A + A+ A + ++ +
Sbjct: 134 EIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHP 193
Query: 266 NTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGCSAVLL 305
A+VV E + N F + + ++ + LF GC+A+++
Sbjct: 194 AMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVI 233
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 184 EAEQVMYGALDNLFSNTNVNPKDIGILV-VNCSLFNPTPSLSAMIVNKYRLRGNIRSYNL 242
EA+ + + + + DI +++ V+C+ F PSL+A ++N+ R +
Sbjct: 83 EAKSRVPAVIQRALDDAELLATDIDVIIYVSCTGFM-MPSLTAWLINEMGFDSTTRQIPI 141
Query: 243 GGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTE 275
+GC+AG A++ A D A++V+ E
Sbjct: 142 AQLGCAAGGAAINRAHDFCTAYPEANALIVACE 174
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKSM--L 290
L +++ Y + GC AG + LAKDL + N + ++V +EN + + ++ M L
Sbjct: 151 LDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTSVTFRGPSETDMDSL 210
Query: 291 IPNCLFRVGCSAVLLSN 307
+ LF G +A+++ +
Sbjct: 211 VGQALFADGAAAIIIGS 227
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 221 PSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQN 280
P +V L +++ Y L G +AG + LAKDL + N + ++V +E IT
Sbjct: 143 PGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDLAENNKGSRVLIVCSE-ITAI 201
Query: 281 WYFG---NKKSMLIPNCLFRVGCSAVLLSN 307
+ G N L+ LF G +A+++ +
Sbjct: 202 LFHGPNENHLDSLVAQALFGDGAAALIVGS 231
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 210 LVVNCSLFNPTPSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYA 269
L+V C P + L +++ + +GC AG + LAKD+ + N
Sbjct: 123 LIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARV 182
Query: 270 VVVSTENITQNWYFGNKKSML---IPNCLFRVGCSAVLL 305
++V +E +T + G ++ L I LF G +AV++
Sbjct: 183 LIVCSE-MTTTCFRGPSETHLDSMIGQALFGDGAAAVIV 220
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKSM--- 289
LR ++ Y + GC AG + LAKDL + N +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 290 LIPNCLFRVGCSAVLLSN 307
L+ LF G +A+++ +
Sbjct: 209 LVGQALFGDGAAALIVGS 226
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 203 NPKDIGILVVNCSLFNPT-PSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLL 261
PK ++ CS P P + LR ++ + GC AG + LAKDL
Sbjct: 123 QPKSKITHLIVCSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLA 182
Query: 262 QVNWNTYAVVVSTENITQNWYFGNKKSM---LIPNCLFRVGCSAVLLSN 307
+ N +VV +E +T + G + L+ LF G +A+++ +
Sbjct: 183 ENNKGARVLVVCSE-VTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGS 230
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 221 PSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQN 280
P + N L ++R L GC AG + AKDL + N +VV +E IT
Sbjct: 725 PGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSE-ITVV 783
Query: 281 WYFGNKKSM---LIPNCLFRVGCSAVLLSN 307
+ G + L+ LF G +AV++ +
Sbjct: 784 TFRGPSEDALDSLVGQALFGDGSAAVIVGS 813
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 119 YKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRKILERSGLGEETYFPEAMHAIPPKPSM 178
Y+ KA YD F EHS+ + S+L +E G ET+FP+ ++ P+
Sbjct: 118 YEVDQQYKAHYDYFAEHSRSAANNRISTLVXYLNDVEEGG---ETFFPKLNLSVHPRKGX 174
Query: 179 A 179
A
Sbjct: 175 A 175
>pdb|2JI4|A Chain A, Human Phosphoribosylpyrophosphate Synthetase - Associated
Protein 41 (Pap41)
Length = 379
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
Query: 138 LTGDFDESSLEFQRKILERSG--LGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDN 195
+ + + S +E +KI ER G +G+ + E P + + +E +
Sbjct: 33 FSANSNSSCMELSKKIAERLGVEMGKVQVYQE-----PNRETRVQIQESVRGKDVFIIQT 87
Query: 196 LFSNTNVNPKDIGILVVNC------SLFNPTPSLSAMIVNKYRLRGNIRSYNLGGMGCSA 249
+ + N ++ I+V C S+ P K R RG+I S L M C A
Sbjct: 88 VSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKA 147
Query: 250 G---VIAVDLAKDLLQVNWN 266
G +I +DL + +Q +N
Sbjct: 148 GLTHLITMDLHQKEIQGFFN 167
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 86/202 (42%), Gaps = 20/202 (9%)
Query: 121 PPHNL-KASYDKFMEHSKLTGDFDESSLEFQ-RKILERSGLGEE-TYFPEAMHAIPPK-- 175
PP+ + +++Y F + ++TG+ + L+ + ++I ERS + + Y E + P
Sbjct: 49 PPNAVDQSTYPDF--YFRITGNEHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVC 106
Query: 176 -----PSMAAARE----EAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFNPT-PSLSA 225
PS+ A + E ++ A + + I L+ CS P P
Sbjct: 107 AFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQEWGQSKSGITHLIF-CSTTTPDLPGADF 165
Query: 226 MIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGN 285
+ L +++ + GC AG + +AKDL + N +V+ +E + +
Sbjct: 166 EVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPS 225
Query: 286 KKSM--LIPNCLFRVGCSAVLL 305
+ + L+ LF G SA+++
Sbjct: 226 ETHLDSLVGQALFGDGASALIV 247
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 86/202 (42%), Gaps = 20/202 (9%)
Query: 121 PPHNL-KASYDKFMEHSKLTGDFDESSLEFQ-RKILERSGLGEE-TYFPEAMHAIPPK-- 175
PP+ + +++Y F + ++TG+ + L+ + ++I ERS + + Y E + P
Sbjct: 33 PPNAVDQSTYPDF--YFRITGNEHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVC 90
Query: 176 -----PSMAAARE----EAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFNPT-PSLSA 225
PS+ A + E ++ A + + I L+ CS P P
Sbjct: 91 AFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQEWGQSKSGITHLIF-CSTTTPDLPGADF 149
Query: 226 MIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGN 285
+ L +++ + GC AG + +AKDL + N +V+ +E + +
Sbjct: 150 EVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPS 209
Query: 286 KKSM--LIPNCLFRVGCSAVLL 305
+ + L+ LF G SA+++
Sbjct: 210 ETHLDSLVGQALFGDGASALIV 231
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 210 LVVNCSLFNPTPSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYA 269
L+V C P + L +++ + +GC AG + LAKD+ + N
Sbjct: 123 LIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARV 182
Query: 270 VVVSTENITQNWYFGNKKSML---IPNCLFRVGCSAVLL 305
++V +E +T + G ++ L I + G +AV++
Sbjct: 183 LIVCSE-MTTTCFRGPSETHLDSMIGQAILGDGAAAVIV 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,424,183
Number of Sequences: 62578
Number of extensions: 452224
Number of successful extensions: 1263
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1250
Number of HSP's gapped (non-prelim): 22
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)