BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016390
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/284 (63%), Positives = 216/284 (76%), Gaps = 3/284 (1%)
Query: 96 FDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 152
+ +TG LRP YP+ VP+YI+ PD+A E L+ +IK + + IE MR
Sbjct: 2 YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 61
Query: 153 ETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV 212
CR+AREVLD AA MI+PGVTT+EID VH A I YPSPLNY+ FPKSCCTSVNEV
Sbjct: 62 LVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEV 121
Query: 213 ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAI 272
ICHGIPD R L++GDIVN+D+T+Y G HGDLNET+FVG D+ +R+LVQ TYECL +AI
Sbjct: 122 ICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAI 181
Query: 273 SIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKV 332
VKPGVR+RE+G +I +HA +GFSVV+SYCGHGI +LFH APN+PHY++NKAVGVMK
Sbjct: 182 DAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKS 241
Query: 333 GQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
G FTIEPMI G W+D WPDGWTAVT DGKRSAQFEHTLLV+
Sbjct: 242 GHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVT 285
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/284 (63%), Positives = 216/284 (76%), Gaps = 3/284 (1%)
Query: 96 FDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 152
+ +TG LRP YP+ VP+YI+ PD+A E L+ +IK + + IE MR
Sbjct: 26 YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 85
Query: 153 ETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV 212
CR+AREVLD AA MI+PGVTT+EID VH A I YPSPLNY+ FPKSCCTSVNEV
Sbjct: 86 LVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEV 145
Query: 213 ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAI 272
ICHGIPD R L++GDIVN+D+T+Y G HGDLNET+FVG D+ +R+LVQ TYECL +AI
Sbjct: 146 ICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAI 205
Query: 273 SIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKV 332
VKPGVR+RE+G +I +HA +GFSVV+SYCGHGI +LFH APN+PHY++NKAVGVMK
Sbjct: 206 DAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKS 265
Query: 333 GQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
G FTIEPMI G W+D WPDGWTAVT DGKRSAQFEHTLLV+
Sbjct: 266 GHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVT 309
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 375 bits (962), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/284 (63%), Positives = 216/284 (76%), Gaps = 3/284 (1%)
Query: 96 FDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 152
+ +TG LRP YP+ VP+YI+ PD+A E L+ +IK + + IE MR
Sbjct: 1 YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 60
Query: 153 ETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV 212
CR+AREVLD AA MI+PGVTT+EID VH A I YPSPLNY+ FPKSCCTSVNEV
Sbjct: 61 LVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEV 120
Query: 213 ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAI 272
ICHGIPD R L++GDIVN+D+T+Y G HGDLNET+FVG D+ +R+LVQ TYECL +AI
Sbjct: 121 ICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAI 180
Query: 273 SIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKV 332
VKPGVR+RE+G +I +HA +GFSVV+SYCGHGI +LFH APN+PHY++NKAVGVMK
Sbjct: 181 DAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKS 240
Query: 333 GQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
G FTIEPMI G W+D WPDGWTAVT DGKRSAQFEHTLLV+
Sbjct: 241 GHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVT 284
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 328 bits (841), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 149/285 (52%), Positives = 205/285 (71%), Gaps = 3/285 (1%)
Query: 95 HFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRET 154
+F +TG +RP+P+S VP++IE PD+A+ P+ E + + + ++I+R+RE
Sbjct: 56 NFKFTGDVRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREA 115
Query: 155 CRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVIC 214
C + R+ LD A ++ PGVTTDEIDR VHE I YPS LNY+ FPKSCCTSVNE++C
Sbjct: 116 CILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIVC 175
Query: 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA---SRQLVQCTYECLEKA 271
HGIPD R L+ GDI+NID++V+YKGVH DLNETYFVG+ ++ ++LV+ Y L +A
Sbjct: 176 HGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVETCYFSLMEA 235
Query: 272 ISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMK 331
I KPG+ ++ IG +I+ + + FSVV+SY GHG+G+LFH P +PH+ +NKAVG+MK
Sbjct: 236 IKKCKPGMFYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPTVPHFKKNKAVGIMK 295
Query: 332 VGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
G FTIEPMIN G + D +WPD WT+ T+DGK SAQFEHTLL++
Sbjct: 296 PGHVFTIEPMINQGHYSDVLWPDQWTSATSDGKLSAQFEHTLLIT 340
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 314 bits (805), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 151/299 (50%), Positives = 202/299 (67%), Gaps = 11/299 (3%)
Query: 96 FDWTGTLRPYPISSKLTVPAYIELPDWA-LDGTPKVEPNSDLQHVVEI----------KT 144
FD+TG LRP I+ + VP++I PD+A G D V++ K
Sbjct: 6 FDFTGPLRPGKITPRRAVPSHILRPDYADRAGGVSASEEKDRGSKVKVYNIQFLHDDSKK 65
Query: 145 PDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKS 204
+I+R++ C+++REVLD A +PG+TTDE+DR+VHEAT+ YPSPLNY+ FPKS
Sbjct: 66 TAEIQRIKTVCQLSREVLDIATAAAKPGITTDELDRIVHEATVERNMYPSPLNYYGFPKS 125
Query: 205 CCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCT 264
CTSVNEVICHGIPDSR+LE+GDI+NIDV+ Y G HGDLNET F+G D+ S +LV
Sbjct: 126 VCTSVNEVICHGIPDSRELEEGDILNIDVSSYLNGFHGDLNETVFIGRPDDDSVRLVHAA 185
Query: 265 YECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRN 324
YECL I +VKP ++++G+ I A+ SVV++Y GHG+G LFH +P + HY+ N
Sbjct: 186 YECLCAGIGVVKPEALYKQVGDAIEACASQYQCSVVRTYTGHGVGHLFHTSPTVCHYANN 245
Query: 325 KAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAHTYYIF 383
K++G+M+ G FTIEPMIN G W+D WPD WT+ T DG+RSAQFEHT++V+ IF
Sbjct: 246 KSLGMMRPGHVFTIEPMINLGTWQDVTWPDKWTSTTKDGRRSAQFEHTMVVTNGGVEIF 304
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 134/275 (48%), Positives = 168/275 (61%), Gaps = 6/275 (2%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREV 161
L P +S VP +I P++ G P + S+ ++TP+ IE+MR RIA
Sbjct: 10 LSPGVLSPTRPVPNWIARPEYV--GKPAAQEGSEPW----VQTPEVIEKMRVAGRIAAGA 63
Query: 162 LDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSR 221
L A + + PGVTTDE+DR+ HE + G YPS L Y FPKSCCTS+NEVICHGIPDS
Sbjct: 64 LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDST 123
Query: 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRF 281
+ DGDIVNIDVT Y GVHGD N T+ G+ + R LV T E +AI+ VKPG
Sbjct: 124 VITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRAL 183
Query: 282 REIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPM 341
IG VI +A G++VV+ + GHGIG FH + HY + +M+ G TFTIEPM
Sbjct: 184 SVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPM 243
Query: 342 INAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
IN G +W DGWT VT D K +AQFEHTLLV+
Sbjct: 244 INLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVT 278
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 254 bits (650), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 134/275 (48%), Positives = 168/275 (61%), Gaps = 6/275 (2%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREV 161
L P +S VP +I P++ G P + S+ ++TP+ IE+MR RIA
Sbjct: 13 LSPGVLSPTRPVPNWIARPEYV--GKPAAQEGSEPW----VQTPEVIEKMRVAGRIAAGA 66
Query: 162 LDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSR 221
L A + + PGVTTDE+DR+ HE + G YPS L Y FPKSCCTS+NEVICHGIPDS
Sbjct: 67 LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDST 126
Query: 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRF 281
+ DGDIVNIDVT Y GVHGD N T+ G+ + R LV T E +AI+ VKPG
Sbjct: 127 VITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRAL 186
Query: 282 REIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPM 341
IG VI +A G++VV+ + GHGIG FH + HY + +M+ G TFTIEPM
Sbjct: 187 SVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPM 246
Query: 342 INAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
IN G +W DGWT VT D K +AQFEHTLLV+
Sbjct: 247 INLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVT 281
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 254 bits (650), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 134/275 (48%), Positives = 168/275 (61%), Gaps = 6/275 (2%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREV 161
L P +S VP +I P++ G P + S+ ++TP+ IE+MR RIA
Sbjct: 7 LSPGVLSPTRPVPNWIARPEYV--GKPAAQEGSEPW----VQTPEVIEKMRVAGRIAAGA 60
Query: 162 LDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSR 221
L A + + PGVTTDE+DR+ HE + G YPS L Y FPKSCCTS+NEVICHGIPDS
Sbjct: 61 LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDST 120
Query: 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRF 281
+ DGDIVNIDVT Y GVHGD N T+ G+ + R LV T E +AI+ VKPG
Sbjct: 121 VITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRAL 180
Query: 282 REIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPM 341
IG VI +A G++VV+ + GHGIG FH + HY + +M+ G TFTIEPM
Sbjct: 181 SVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPM 240
Query: 342 INAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
IN G +W DGWT VT D K +AQFEHTLLV+
Sbjct: 241 INLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVT 275
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 251 bits (642), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 133/275 (48%), Positives = 167/275 (60%), Gaps = 6/275 (2%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREV 161
L P +S VP +I P++ G P + S+ ++TP+ IE+MR RIA
Sbjct: 13 LSPGVLSPTRPVPNWIARPEYV--GKPAAQEGSEPW----VQTPEVIEKMRVAGRIAAGA 66
Query: 162 LDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSR 221
L A + + PGVTTDE+DR+ HE + G YPS L Y FPKSC TS+NEVICHGIPDS
Sbjct: 67 LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCSTSLNEVICHGIPDST 126
Query: 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRF 281
+ DGDIVNIDVT Y GVHGD N T+ G+ + R LV T E +AI+ VKPG
Sbjct: 127 VITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRAL 186
Query: 282 REIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPM 341
IG VI +A G++VV+ + GHGIG FH + HY + +M+ G TFTIEPM
Sbjct: 187 SVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPM 246
Query: 342 INAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
IN G +W DGWT VT D K +AQFEHTLLV+
Sbjct: 247 INLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVT 281
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 228 bits (580), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 151/239 (63%), Gaps = 2/239 (0%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 62 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 121
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG+ FH P
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQ 181
Query: 318 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
+ HY + V+K G TFTIEPM+NAG R DGWT T D SAQ+EHT++V+
Sbjct: 182 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVT 240
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 151/239 (63%), Gaps = 2/239 (0%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG+ FH P
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQ 182
Query: 318 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
+ HY + V+K G TFTIEPM+NAG R DGWT T D SAQ+EHT++V+
Sbjct: 183 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVT 241
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 151/239 (63%), Gaps = 2/239 (0%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG+ FH P
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQ 182
Query: 318 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
+ HY + V+K G TFTIEPM+NAG R DGWT T D SAQ+EHT++V+
Sbjct: 183 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVT 241
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 151/239 (63%), Gaps = 2/239 (0%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG+ FH P
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQ 182
Query: 318 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
+ HY + V+K G TFTIEPM+NAG R DGWT T D SAQ+EHT++V+
Sbjct: 183 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVT 241
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 150/239 (62%), Gaps = 2/239 (0%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 62 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 121
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQ 181
Query: 318 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
+ HY + V+K G TFTIEPM+NAG R DGWT T D SAQ+EHT++V+
Sbjct: 182 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVT 240
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 150/239 (62%), Gaps = 2/239 (0%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQ 182
Query: 318 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
+ HY + V+K G TFTIEPM+NAG R DGWT T D SAQ+EHT++V+
Sbjct: 183 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVT 241
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 150/239 (62%), Gaps = 2/239 (0%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQ 182
Query: 318 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
+ HY + V+K G TFTIEPM+NAG R DGWT T D SAQ+EHT++V+
Sbjct: 183 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVT 241
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 150/239 (62%), Gaps = 2/239 (0%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 62 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 121
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQ 181
Query: 318 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
+ HY + V+K G TFTIEPM+NAG R DGWT T D SAQ+EHT++V+
Sbjct: 182 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVT 240
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 150/239 (62%), Gaps = 2/239 (0%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 62 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 121
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQ 181
Query: 318 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
+ HY + V+K G TFTIEPM+NAG R DGWT T D SAQ+EHT++V+
Sbjct: 182 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVT 240
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 149/237 (62%), Gaps = 2/237 (0%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHF 200
IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L YH
Sbjct: 4 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 63
Query: 201 FPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 259
+PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG +
Sbjct: 64 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 123
Query: 260 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIP 319
L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P +
Sbjct: 124 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVL 183
Query: 320 HYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
HY + V+K G TFTIEPM+NAG R DGWT T D SAQ+EHT++V+
Sbjct: 184 HYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVT 240
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 149/237 (62%), Gaps = 2/237 (0%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHF 200
IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L YH
Sbjct: 2 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 61
Query: 201 FPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 259
+PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG +
Sbjct: 62 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 121
Query: 260 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIP 319
L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P +
Sbjct: 122 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVL 181
Query: 320 HYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
HY + V+K G TFTIEPM+NAG R DGWT T D SAQ+EHT++V+
Sbjct: 182 HYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVT 238
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 151/246 (61%), Gaps = 1/246 (0%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
+++I T +MR ++A E LD ++P VTT+ ++ + H + P+PLNY
Sbjct: 5 MIKIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNY 64
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
FPKS CTS+N V+CHGIP+ + L++GDIVNIDVTV G +GD + Y+VG+ +
Sbjct: 65 KGFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPK 124
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNI 318
+L+Q TY+ + K I +V+PG + +IG I +A +SVV+ Y GHGIG +FH P+I
Sbjct: 125 RLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSI 184
Query: 319 PHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWP-DGWTAVTADGKRSAQFEHTLLVSA 377
+Y RN +K G FT+EPMINAG + + DGWT T D SAQFEHT+ V+
Sbjct: 185 LNYGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTK 244
Query: 378 HTYYIF 383
+ IF
Sbjct: 245 DGFEIF 250
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 217 bits (553), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 151/246 (61%), Gaps = 1/246 (0%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
+++I T +MR ++A E LD ++P VTT+ ++ + H + P+PLNY
Sbjct: 5 MIKIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNY 64
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
FPKS CTS+N V+CHGIP+ + L++GDIVNIDVTV G +GD + Y+VG+ +
Sbjct: 65 KGFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPK 124
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNI 318
+L+Q TY+ + K I +V+PG + +IG I +A +SVV+ Y GHGIG +FH P+I
Sbjct: 125 RLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSI 184
Query: 319 PHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWP-DGWTAVTADGKRSAQFEHTLLVSA 377
+Y RN +K G FT+EPMINAG + + DGWT T D SAQFEHT+ V+
Sbjct: 185 LNYGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTK 244
Query: 378 HTYYIF 383
+ IF
Sbjct: 245 DGFEIF 250
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 143/246 (58%), Gaps = 1/246 (0%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
++ IKTP +IE+M++ + L ++I PG T +++ +V E P+ Y
Sbjct: 13 MIRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGY 72
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
+ + C SVNE + HG+P K+ ++GDIV++DV Y+G++GD TY VG DE
Sbjct: 73 GGYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERG 132
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
++LV+ T E LEKAI ++KPG+R ++ I GF+V++ Y GHG+G H P
Sbjct: 133 KELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQ 192
Query: 318 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSA 377
IP+Y V++ G T IEPM++ G WR + DGWTAVT DG R A FEHT+L++
Sbjct: 193 IPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITE 252
Query: 378 HTYYIF 383
+ I
Sbjct: 253 NGAEIL 258
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 167 bits (423), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 132/238 (55%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
++ +K+P +IE M E+ + +V I+PG+T+ +I+ V + + GG + + Y
Sbjct: 1 MITLKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGY 60
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
+ + C S+N+ ICHG P + L+DGD++ +D+ V KG D +Y VG +
Sbjct: 61 EGYKYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEID 120
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNI 318
+L++ T + L I + G R +IG I + G+ VV+ + GHGIG H +P I
Sbjct: 121 RLMEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMI 180
Query: 319 PHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
PHY +K G TIEPM+N G WR +M P+GWTA T DG S Q+EH+L ++
Sbjct: 181 PHYGEAGKGLRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAIT 238
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 154 bits (390), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 122/247 (49%), Gaps = 7/247 (2%)
Query: 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL 196
+ VE +TP +++ M I L A + GV+T E+D+V AG PS L
Sbjct: 29 KKTVEQRTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFL 88
Query: 197 NYHFFPKSCCTSVNEVICHGIPDSRK-LEDGDIVNIDVTVYYKGVHGDLNETYFVGNADE 255
YH FP S C+SVN+ + HGIP + L DGD+V+ID G HGD T+ VG
Sbjct: 89 GYHGFPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIP 148
Query: 256 ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS------GFSVVKSYCGHGIG 309
+ L + T +E I+ + PG R ++ I + F +V Y GHGIG
Sbjct: 149 SDEALSEATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFGIVDGYGGHGIG 208
Query: 310 ELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQF 369
H P +P+ ++ VG IEPM+ G + R+ D WT VT DG R+A +
Sbjct: 209 RSMHLDPFLPNEGAPGKGPLLAVGSVLAIEPMLTLGTTQTRVLADDWTVVTTDGSRAAHW 268
Query: 370 EHTLLVS 376
EHT+ V+
Sbjct: 269 EHTVAVT 275
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 2/237 (0%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
+KT ++++ ++E I +V + +PG+TT E+D + E G +P++ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLV 261
P C SVNE + HGIP R + +GD+VNIDV+ G + D ++ VG +D+ +Q V
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 262 -QCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAP-NIP 319
E AI+ VKPG + IG+ ++ A + V+K+ GHG+G H AP ++
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVL 182
Query: 320 HYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
+Y K ++ G IEP I++ + W T+D AQ EHT++V+
Sbjct: 183 NYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVT 239
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 15/201 (7%)
Query: 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTS 208
E++ + IA++V + A ++ RPG+ E+ + + + GG P+ FP S
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLS 55
Query: 209 VNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTY 265
+NE+ H P D+ L++GD + IDV V+ G D T VG ++ +L++
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAAK 112
Query: 266 ECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGEL-FHCAPNIPHYSRN 324
E L AIS+ + GV +E+G+ I GF + + GH I H +IP+ R
Sbjct: 113 EALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYRP 172
Query: 325 KAVGVMKVGQTFTIEPMINAG 345
V+K G F IEP G
Sbjct: 173 HDNYVLKEGDVFAIEPFATIG 193
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 15/201 (7%)
Query: 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTS 208
E++ + IA++V + A ++ RPG+ E+ + + + GG P+ FP S
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLS 55
Query: 209 VNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTY 265
+NE+ H P D+ L++GD + IDV V+ G D T VG ++ +L++
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAAK 112
Query: 266 ECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGEL-FHCAPNIPHYSRN 324
E L AIS+ + GV +E+G+ I GF + + GH I H +IP+ R
Sbjct: 113 EALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYRP 172
Query: 325 KAVGVMKVGQTFTIEPMINAG 345
V+K G F IEP G
Sbjct: 173 HDNYVLKEGDVFAIEPFATIG 193
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 12/203 (5%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
IKT ++IE + + C IA + + AA I G E+ V E + G P F
Sbjct: 124 IKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKV-EYLMKMNGAEKPA----F 178
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLV 261
+ + HG+ +++E GD+V ID+ Y + D+ T VG+ +E R++
Sbjct: 179 DTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIY 238
Query: 262 QCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS--VVKSYCGHGIGELFHCAPNIP 319
+ E ++A+ KPG+ +E+ + G+ + S GHG+G H P I
Sbjct: 239 EIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYGDYFIHS-LGHGVGLEIHEWPRIS 297
Query: 320 HYSRNKAVGVMKVGQTFTIEPMI 342
Y V+K G TIEP I
Sbjct: 298 QYDET----VLKEGMVITIEPGI 316
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 13/224 (5%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
IKT +I+ ++E +IA + IRPGV+ E+ + G S F
Sbjct: 130 IKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS-----F 184
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLV 261
+ + + HG+ + +E GD V +D YYKG D+ T VG + +++
Sbjct: 185 DIIVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIY 244
Query: 262 QCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYC-GHGIGELFHCAPNIPH 320
E + ++ +K G+ RE + + T G+ + GHGIG H AP +
Sbjct: 245 NIVLEAQLRGVNGIKAGLTGREADALTRDYITEKGYGEYFGHSTGHGIGLEIHEAPGLAF 304
Query: 321 YSRNKAVGVMKVGQTFTIEPMINA-GVWRDRMWPDGWTAVTADG 363
S V++ G T+EP I G+ R+ D VT++G
Sbjct: 305 RSDT----VLEPGMAVTVEPGIYIPGIGGVRIEDD--IIVTSEG 342
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 10/202 (4%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
IK+ +I+ + + C IA + + AA I G E+ V E + G P F
Sbjct: 127 IKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKV-EYLMKMNGAEKPA----F 181
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLV 261
+ + HG+ +++E GD+V ID+ Y+ + D+ T VG+ +E +++
Sbjct: 182 DTIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIY 241
Query: 262 QCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY-CGHGIGELFHCAPNIPH 320
+ E +KA+ KPG+ +E+ + G+ ++ GHG+G H P +
Sbjct: 242 EIVLEAQKKAVESAKPGITAKELDSIARNIIAEYGYGEYFNHSLGHGVGLEVHEWPRVSQ 301
Query: 321 YSRNKAVGVMKVGQTFTIEPMI 342
Y V++ G TIEP I
Sbjct: 302 YDET----VLREGMVITIEPGI 319
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 101/262 (38%), Gaps = 18/262 (6%)
Query: 121 DWALD----GTPKVEPNSDL-QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTT 175
DW + G +P S L + + IK ++++ M RIA +V + +T
Sbjct: 105 DWLIGIMKLGKFTFQPLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEI-------LTW 157
Query: 176 DEIDRVVHEATITAGGYPSPLNYHF-FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVT 234
D I E + L+ F + N H P RK+ GDI+ +D
Sbjct: 158 DLIGMKERELALKIELLIRELSDGIAFEPIVASGENAANPHHEPGERKIRKGDIIILDYG 217
Query: 235 VYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294
+KG D+ T +G DE ++ + + E A V+ G++ +++ +
Sbjct: 218 ARWKGYCSDITRTIGLGELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVISK 277
Query: 295 SGF-SVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWP 353
+G+ GHG+G H P Y ++K G TFTIEP I
Sbjct: 278 AGYGEYFIHRTGHGLGLDVHEEP----YIGPDGEVILKNGMTFTIEPGIYVPGLGGVRIE 333
Query: 354 DGWTAVTADGKRSAQFEHTLLV 375
D G+R + E L++
Sbjct: 334 DDIVVDEGKGRRLTKAERELII 355
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 90/211 (42%), Gaps = 10/211 (4%)
Query: 133 NSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY 192
+ +++ + +K +IE++++ I+ + IR G+T EI ++ E T+ G
Sbjct: 124 DDEVKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALL-EYTMRKEG- 181
Query: 193 PSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN 252
+ + S C S + HG + +E GD++ ID Y+ D+ +G
Sbjct: 182 AEGVAFDTIVASGCRSA---LPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGE 238
Query: 253 ADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY-CGHGIGEL 311
+ +++ E E+A+ I K GV + + V G+ + GHGIG
Sbjct: 239 PSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVAREFIREKGYGEFFGHSLGHGIGLE 298
Query: 312 FHCAPNIPHYSRNKAVGVMKVGQTFTIEPMI 342
H P I RN + + FT+EP I
Sbjct: 299 VHEGPAISF--RNDS--PLPENVVFTVEPGI 325
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILAYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V I YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG G + T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 10/151 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDS-RKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASR 258
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R
Sbjct: 229 YNTIVGSGENGCILHYTENECXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 288
Query: 259 QLVQCTYECLEKAISIVKPGVRFREI-GEVI 288
++ E LE ++ + +PG E+ GEV+
Sbjct: 289 EIYDIVLESLETSLRLYRPGTSILEVTGEVV 319
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 68/165 (41%), Gaps = 11/165 (6%)
Query: 215 HGIPDSRKLEDGDIVNIDVT-VYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAIS 273
HG D RKL+ GDIV +D+ Y G + D TY +G+ Q A+
Sbjct: 218 HGYSD-RKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVD 276
Query: 274 IVKPGVRFREIGEVINRHATMSGFSVVKSY-CGHGIGELFHCAPNIPHYSRNKAVGVMKV 332
V+PGV ++ +G + + GHGIG H P I + V
Sbjct: 277 AVRPGVTAAQVDAAARDVLADAGLAEYFVHRTGHGIGLCVHEEPYIVAGNELPLVA---- 332
Query: 333 GQTFTIEPMIN-AGVWRDRMWPDGWTAVTADGKRSAQFE-HTLLV 375
G F+IEP I G W R+ + VT +G S H L+V
Sbjct: 333 GMAFSIEPGIYFPGRWGARI--EDIVVVTENGALSVNNRPHELMV 375
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISI 274
H P RK+ GD+V D Y G D+ T VG E +++ + E E A+
Sbjct: 219 HHRPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTVVVGPPSEEVKKVYEIVKEAQETAVQK 278
Query: 275 VKPGVRFREIGEVINRHATMSGFSVVKSY-------CGHGIGELFHCAPNIPHYSRNKAV 327
V G+ EV++ AT G Y GHG+G H P I ++
Sbjct: 279 VAEGIP----AEVVD--ATARGIISKYGYGEYFIHRTGHGLGIDVHEEPYISPGNKK--- 329
Query: 328 GVMKVGQTFTIEPMI 342
++K G FTIEP I
Sbjct: 330 -ILKDGMVFTIEPGI 343
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 36/181 (19%)
Query: 207 TSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYE 266
+ +N H +RK+ GDI++++ G + L T F+ + + +L Q E
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 267 CLEKAISIVKPGVR----FREIGEVINRHATMSGFSVVKSY-CGHGIGELFHCAPNIPHY 321
E + ++KPG R RE+ E+ +H + +++ GH G L H +Y
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQ----YRTFGYGHSFGTLSH------YY 332
Query: 322 SRNKAV-------GVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLL 374
R + V++ G ++EPMI M P+G A G R EH +L
Sbjct: 333 GREAGLELREDIDTVLEPGMVVSMEPMI--------MLPEGLPG--AGGYR----EHDIL 378
Query: 375 V 375
+
Sbjct: 379 I 379
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 36/181 (19%)
Query: 207 TSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYE 266
+ +N H +RK+ GDI++++ G + L T F+ + + +L Q E
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 267 CLEKAISIVKPGVR----FREIGEVINRHATMSGFSVVKSY-CGHGIGELFHCAPNIPHY 321
E + ++KPG R RE+ E+ +H + +++ GH G L H +Y
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQ----YRTFGYGHSFGTLSH------YY 332
Query: 322 SRNKAV-------GVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLL 374
R + V++ G ++EPMI M P+G A G R EH +L
Sbjct: 333 GREAGLELREDIDTVLEPGMVVSMEPMI--------MLPEGLPG--AGGYR----EHDIL 378
Query: 375 V 375
+
Sbjct: 379 I 379
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 201 FPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA 256
FP S SVN +CH P L++GD+V ID+ V+ G ++ T+ +G A
Sbjct: 69 FPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQGT 126
Query: 257 S-----RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292
+++ + C E A+ +VKPG + ++ E N+ A
Sbjct: 127 QVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVA 167
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 201 FPKSCCTSVNEVICHGIPDSRK----LEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA 256
FP S SVN +CH P L++GD+V ID+ V+ G ++ T+ V A
Sbjct: 76 FPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGT 133
Query: 257 S-----RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292
+++ + C E A+ +VKPG + ++ E N+ A
Sbjct: 134 QVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVA 174
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 201 FPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA 256
FP S SVN +CH P L++GD+V ID+ V+ G ++ T+ V A
Sbjct: 83 FPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGT 140
Query: 257 S-----RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292
+++ + C E A+ +VKPG + ++ E N+ A
Sbjct: 141 QVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVA 181
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 194 SPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNA 253
S + +H F + N + H + ++++GD+V +D+ + D++ T F N
Sbjct: 218 SGIKHHAFNTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYT-FPANG 276
Query: 254 DEASR--QLVQCTYECLEKAISIVKPGVRFREIGE 286
+SR Q+ L++ I+KPG++F + E
Sbjct: 277 TFSSRQKQIYNIVLNALKETTEIIKPGLKFAALNE 311
>pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
pdb|1KP0|B Chain B, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
Length = 402
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 207 TSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYE 266
+ +N H R + GDI++++ G + L T F+ +AS +
Sbjct: 223 SGINTDGAHNPVTXRVVXRGDILSLNCFPMIFGYYTALERTLFLXXVXDASLXIWXKNTA 282
Query: 267 CLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY-CGHGIGELFHCAPNIPHYSRNK 325
+ + ++KPG R ++I +N +++ GH G L H +Y R
Sbjct: 283 VHRRGLXLIKPGARCKDIASELNXMYRXWDLLRYRTFGYGHSFGVLXH------YYGREA 336
Query: 326 AV-------GVMKVGQTFTIEPMI 342
V V++ G ++EPM+
Sbjct: 337 GVELREDIXTVLEPGMVVSMEPMV 360
>pdb|3ES5|A Chain A, Crystal Structure Of Partitivirus (Psv-F)
pdb|3ES5|B Chain B, Crystal Structure Of Partitivirus (Psv-F)
Length = 420
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 45 DCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP 104
DC K W H S+ + +L++ S LV + +R +G + +P
Sbjct: 202 DCSKLVWADHSSLSMIKRLASEKI---SQLVKQRYRVTDAQGHVYSVSMP---------- 248
Query: 105 YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVV 140
+LT A LPD+ D P V PNSD V+
Sbjct: 249 -----QLTDQA---LPDY-YDSIPDVAPNSDQLRVL 275
>pdb|1IBV|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At-170 C
pdb|1IBV|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At-170 C
pdb|1IBV|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At-170 C
pdb|1IBW|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At 25 C
pdb|1IBW|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At 25 C
pdb|1IBW|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At 25 C
Length = 228
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 98 WTG----TLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERM 151
W G + P I + +TV Y+ LP ++ G + P+ D++ + + P+ +E+M
Sbjct: 158 WIGFAYTMMEPGQIGNAITVAPYVSLPIDSIPGGSILTPDKDMEIMENLTMPEWLEKM 215
>pdb|1HQ6|B Chain B, Structure Of Pyruvoyl-dependent Histidine Decarboxylase At
Ph 8
pdb|1HQ6|D Chain D, Structure Of Pyruvoyl-dependent Histidine Decarboxylase At
Ph 8
pdb|1IBT|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At-170 C
pdb|1IBT|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At-170 C
pdb|1IBT|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At-170 C
pdb|1IBU|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At 25 C
pdb|1IBU|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At 25 C
pdb|1IBU|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At 25 C
pdb|1PYA|B Chain B, Refined Structure Of The Pyruvoyl-Dependent Histidine
Decarboxylase From Lactobacillus 30a
pdb|1PYA|D Chain D, Refined Structure Of The Pyruvoyl-Dependent Histidine
Decarboxylase From Lactobacillus 30a
pdb|1PYA|F Chain F, Refined Structure Of The Pyruvoyl-Dependent Histidine
Decarboxylase From Lactobacillus 30a
Length = 229
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 98 WTG----TLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERM 151
W G + P I + +TV Y+ LP ++ G + P+ D++ + + P+ +E+M
Sbjct: 159 WIGFAYTMMEPGQIGNAITVAPYVSLPIDSIPGGSILTPDKDMEIMENLTMPEWLEKM 216
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 149 ERMRETCRIAREVLDAAARMIRPG 172
+++ E ++ RE+L++AAR+++PG
Sbjct: 359 DKINEMSQLQRELLESAARLVKPG 382
>pdb|2WYB|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq With A Covalently Bound Dodecanoic Acid
pdb|2WYC|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq In Complex With 3-Oxo-Lauric Acid
pdb|2WYD|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq In Complex With Dodecanoic Acid
pdb|2WYE|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq Is An Ntn-Hydrolase With An Unusual
Substrate-Binding Pocket
pdb|3L91|B Chain B, Structure Of Pseudomonas Aerugionsa Pvdq Bound To
Octanoate
pdb|3L94|B Chain B, Structure Of Pvdq Covalently Acylated With Myristate
pdb|3SRA|B Chain B, Structure Of Pseudomonas Aerugionsa Pvdq Covalently
Acylated With Myristic Acid From Pvdiq
pdb|3SRB|B Chain B, Structure Of Pseudomonas Aeruginosa Pvdq Bound To Smer28
pdb|3SRC|B Chain B, Structure Of Pseudomonas Aeruginosa Pvdq Bound To Ns2028
Length = 546
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 94 PHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKV 130
PHF W G +R Y + LT+P +++ +L G P V
Sbjct: 22 PHFPWNGAMRFYQM--HLTIPGRLDVMGASLPGLPVV 56
>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain
Length = 52
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 4 GSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57
G+ AE SCV CG+ A +C C ++ +C+ C + W H+ +
Sbjct: 1 GAMDAERKEQSCVNCGREAMSECTGCHKVN-------YCSTFCQRKDWKDHQHI 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,602,976
Number of Sequences: 62578
Number of extensions: 531191
Number of successful extensions: 1595
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1448
Number of HSP's gapped (non-prelim): 71
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)