Query 016390
Match_columns 390
No_of_seqs 364 out of 1721
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:25:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2738 Putative methionine am 100.0 2E-114 4E-119 802.4 29.7 355 10-386 4-360 (369)
2 PLN03158 methionine aminopepti 100.0 2E-103 4E-108 785.4 39.2 379 6-386 3-381 (396)
3 COG0024 Map Methionine aminope 100.0 3E-63 6.6E-68 464.8 28.5 249 140-388 3-254 (255)
4 PRK12897 methionine aminopepti 100.0 1.2E-57 2.6E-62 432.4 29.0 247 140-386 2-248 (248)
5 PRK07281 methionine aminopepti 100.0 1.7E-57 3.7E-62 438.4 29.4 251 139-389 1-283 (286)
6 PRK12318 methionine aminopepti 100.0 7.6E-56 1.7E-60 428.7 31.0 248 140-388 41-291 (291)
7 PRK12896 methionine aminopepti 100.0 1.9E-55 4.1E-60 418.3 29.5 249 138-386 6-255 (255)
8 TIGR00500 met_pdase_I methioni 100.0 3.9E-55 8.4E-60 414.6 29.6 246 141-386 2-247 (247)
9 PRK05716 methionine aminopepti 100.0 7E-55 1.5E-59 413.7 29.4 251 139-389 2-252 (252)
10 cd01086 MetAP1 Methionine Amin 100.0 1.7E-50 3.6E-55 380.6 28.2 238 148-385 1-238 (238)
11 PRK09795 aminopeptidase; Provi 100.0 4.6E-50 9.9E-55 400.1 25.8 227 136-388 121-353 (361)
12 COG0006 PepP Xaa-Pro aminopept 100.0 3.3E-48 7.2E-53 389.7 24.9 231 133-389 145-379 (384)
13 PRK15173 peptidase; Provisiona 100.0 9.6E-48 2.1E-52 377.7 25.7 227 135-388 88-317 (323)
14 PRK10879 proline aminopeptidas 100.0 1.5E-47 3.3E-52 390.2 26.9 236 136-388 167-423 (438)
15 cd01090 Creatinase Creatine am 100.0 4.6E-47 1E-51 355.7 25.7 225 148-385 1-228 (228)
16 PRK14575 putative peptidase; P 100.0 8.5E-47 1.8E-51 381.8 26.1 227 135-388 171-400 (406)
17 cd01087 Prolidase Prolidase. E 100.0 1.2E-46 2.7E-51 355.6 24.8 223 148-385 1-243 (243)
18 TIGR02993 ectoine_eutD ectoine 100.0 5.9E-47 1.3E-51 381.3 23.4 229 135-388 151-385 (391)
19 PRK14576 putative endopeptidas 100.0 3.9E-46 8.5E-51 376.8 26.0 227 135-388 170-399 (405)
20 TIGR00495 crvDNA_42K 42K curve 100.0 2.6E-44 5.6E-49 360.0 28.7 248 140-388 11-339 (389)
21 PRK13607 proline dipeptidase; 100.0 6.8E-44 1.5E-48 363.2 24.6 246 136-388 155-441 (443)
22 cd01092 APP-like Similar to Pr 100.0 2.3E-43 5E-48 324.4 24.9 207 148-380 1-208 (208)
23 cd01085 APP X-Prolyl Aminopept 100.0 7.5E-42 1.6E-46 319.5 23.7 209 149-382 5-221 (224)
24 PF00557 Peptidase_M24: Metall 100.0 2.7E-41 5.8E-46 311.0 23.0 204 149-377 1-207 (207)
25 PTZ00053 methionine aminopepti 100.0 6.1E-41 1.3E-45 338.5 26.9 238 140-387 150-468 (470)
26 PRK08671 methionine aminopepti 100.0 9.4E-41 2E-45 323.6 26.9 227 147-385 1-291 (291)
27 cd01089 PA2G4-like Related to 100.0 5.6E-41 1.2E-45 314.4 24.2 214 148-385 1-228 (228)
28 cd01091 CDC68-like Related to 100.0 6.3E-41 1.4E-45 316.7 23.5 227 148-385 1-243 (243)
29 TIGR00501 met_pdase_II methion 100.0 6E-40 1.3E-44 318.4 26.2 229 145-385 2-295 (295)
30 cd01088 MetAP2 Methionine Amin 100.0 7E-40 1.5E-44 317.6 26.2 226 148-385 1-291 (291)
31 cd01066 APP_MetAP A family inc 100.0 6.1E-40 1.3E-44 298.9 24.0 206 148-380 1-207 (207)
32 KOG2414 Putative Xaa-Pro amino 100.0 5E-39 1.1E-43 310.4 17.9 230 137-385 223-471 (488)
33 KOG2737 Putative metallopeptid 100.0 7.3E-36 1.6E-40 285.8 15.1 248 137-388 180-469 (492)
34 KOG1189 Global transcriptional 99.9 2.9E-24 6.4E-29 220.1 17.5 244 126-388 121-380 (960)
35 KOG2413 Xaa-Pro aminopeptidase 99.9 5.3E-21 1.1E-25 193.9 17.2 224 136-381 301-537 (606)
36 KOG2775 Metallopeptidase [Gene 99.8 1.9E-20 4.2E-25 175.2 15.8 235 143-387 80-395 (397)
37 COG5406 Nucleosome binding fac 99.7 2.2E-17 4.7E-22 167.0 14.9 243 130-388 158-420 (1001)
38 KOG2776 Metallopeptidase [Gene 99.7 1.8E-16 3.9E-21 152.1 20.2 246 141-388 14-342 (398)
39 PLN03144 Carbon catabolite rep 99.4 4.4E-13 9.6E-18 140.4 4.6 50 13-62 63-113 (606)
40 PF01753 zf-MYND: MYND finger; 98.0 2.7E-06 5.9E-11 56.6 1.6 36 15-57 1-36 (37)
41 KOG1710 MYND Zn-finger and ank 97.5 3E-05 6.6E-10 73.6 1.3 40 13-59 320-360 (396)
42 cd01066 APP_MetAP A family inc 97.5 0.0019 4.1E-08 58.2 12.6 102 149-252 102-204 (207)
43 PLN03158 methionine aminopepti 97.4 0.001 2.3E-08 67.4 10.6 116 240-377 127-247 (396)
44 cd01086 MetAP1 Methionine Amin 97.4 0.0014 3E-08 61.5 10.9 103 255-377 2-105 (238)
45 cd01092 APP-like Similar to Pr 97.2 0.0064 1.4E-07 55.4 12.0 101 149-251 103-204 (208)
46 cd01088 MetAP2 Methionine Amin 97.1 0.0039 8.5E-08 60.7 10.6 98 255-377 2-100 (291)
47 PRK05716 methionine aminopepti 97.0 0.0079 1.7E-07 56.9 11.7 100 150-252 119-240 (252)
48 TIGR00500 met_pdase_I methioni 96.9 0.014 3E-07 55.2 12.2 100 150-252 117-238 (247)
49 PRK15173 peptidase; Provisiona 96.9 0.013 2.9E-07 57.9 12.2 102 150-251 203-305 (323)
50 PRK12896 methionine aminopepti 96.9 0.007 1.5E-07 57.3 9.9 110 244-377 4-120 (255)
51 PRK14575 putative peptidase; P 96.7 0.02 4.4E-07 58.4 12.2 99 150-252 286-389 (406)
52 PRK12897 methionine aminopepti 96.7 0.017 3.8E-07 54.7 10.9 100 150-252 118-239 (248)
53 cd01090 Creatinase Creatine am 96.6 0.03 6.5E-07 52.5 12.2 101 150-252 110-220 (228)
54 PRK09795 aminopeptidase; Provi 96.6 0.031 6.8E-07 56.0 13.1 106 144-251 235-341 (361)
55 PRK14576 putative endopeptidas 96.6 0.028 6.2E-07 57.3 12.5 100 150-251 285-387 (405)
56 cd01091 CDC68-like Related to 96.5 0.026 5.6E-07 53.6 10.9 100 149-252 119-234 (243)
57 TIGR02993 ectoine_eutD ectoine 96.5 0.027 5.9E-07 57.1 11.6 98 150-251 271-373 (391)
58 PRK12318 methionine aminopepti 96.4 0.039 8.4E-07 53.8 11.8 86 150-238 159-247 (291)
59 cd01087 Prolidase Prolidase. E 96.4 0.038 8.3E-07 52.0 11.5 103 150-252 104-235 (243)
60 PRK07281 methionine aminopepti 96.4 0.038 8.2E-07 53.7 11.3 85 150-237 149-237 (286)
61 PRK08671 methionine aminopepti 96.1 0.11 2.3E-06 50.7 12.9 95 150-251 102-205 (291)
62 cd01089 PA2G4-like Related to 95.9 0.085 1.8E-06 49.3 11.0 99 149-252 120-220 (228)
63 PF00557 Peptidase_M24: Metall 95.8 0.12 2.5E-06 47.2 11.3 98 255-376 1-99 (207)
64 TIGR00495 crvDNA_42K 42K curve 95.8 0.083 1.8E-06 53.6 11.1 104 256-377 21-130 (389)
65 COG0024 Map Methionine aminope 95.4 0.12 2.5E-06 49.4 9.8 87 255-344 12-101 (255)
66 TIGR00501 met_pdase_II methion 95.4 0.17 3.7E-06 49.4 11.3 98 255-377 6-104 (295)
67 COG0006 PepP Xaa-Pro aminopept 95.4 0.18 3.8E-06 50.9 11.7 112 137-252 252-367 (384)
68 KOG2738 Putative methionine am 95.3 0.086 1.9E-06 50.8 8.3 86 255-344 123-211 (369)
69 PRK10879 proline aminopeptidas 94.3 0.53 1.2E-05 48.5 12.1 101 151-251 284-410 (438)
70 PTZ00053 methionine aminopepti 94.2 0.44 9.6E-06 49.4 11.2 98 256-376 160-262 (470)
71 PF04438 zf-HIT: HIT zinc fing 93.2 0.05 1.1E-06 34.4 1.4 29 12-48 2-30 (30)
72 cd01085 APP X-Prolyl Aminopept 92.0 3 6.6E-05 38.9 12.3 96 152-251 114-215 (224)
73 PF09889 DUF2116: Uncharacteri 90.9 0.19 4.1E-06 36.9 2.3 34 24-59 4-37 (59)
74 PRK13607 proline dipeptidase; 90.7 2.6 5.7E-05 43.5 11.4 88 152-239 271-391 (443)
75 PRK00418 DNA gyrase inhibitor; 85.5 0.57 1.2E-05 34.8 1.8 29 22-50 5-36 (62)
76 KOG2857 Predicted MYND Zn-fing 85.2 2.3 5E-05 36.6 5.6 29 12-48 5-34 (157)
77 PRK01343 zinc-binding protein; 82.1 0.83 1.8E-05 33.3 1.5 26 24-50 10-35 (57)
78 KOG2776 Metallopeptidase [Gene 81.5 6.6 0.00014 39.1 7.9 93 256-378 23-133 (398)
79 KOG1189 Global transcriptional 79.8 6.8 0.00015 42.6 7.8 98 151-252 259-368 (960)
80 PF13824 zf-Mss51: Zinc-finger 79.1 2.4 5.2E-05 30.7 3.0 38 15-59 2-43 (55)
81 COG3024 Uncharacterized protei 77.8 1.5 3.2E-05 32.6 1.7 13 38-50 25-37 (65)
82 PF03884 DUF329: Domain of unk 76.8 0.93 2E-05 33.1 0.4 27 24-50 3-32 (57)
83 KOG3612 PHD Zn-finger protein 76.1 0.93 2E-05 47.1 0.3 37 15-60 530-566 (588)
84 cd02249 ZZ Zinc finger, ZZ typ 68.7 1.5 3.2E-05 30.3 -0.2 37 14-58 2-41 (46)
85 cd01666 TGS_DRG_C TGS_DRG_C: 68.6 18 0.00039 27.8 5.8 52 169-231 21-73 (75)
86 PF02069 Metallothio_Pro: Prok 68.1 2.4 5.2E-05 30.3 0.8 27 24-50 8-39 (52)
87 PF06467 zf-FCS: MYM-type Zinc 59.1 6.4 0.00014 26.3 1.6 35 13-49 7-42 (43)
88 PRK04023 DNA polymerase II lar 58.9 5.6 0.00012 44.6 1.9 38 4-44 618-656 (1121)
89 KOG2775 Metallopeptidase [Gene 58.4 54 0.0012 32.2 8.1 83 255-343 86-174 (397)
90 COG4306 Uncharacterized protei 53.8 2.4 5.2E-05 35.8 -1.5 21 11-31 27-47 (160)
91 cd02341 ZZ_ZZZ3 Zinc finger, Z 50.1 6.2 0.00013 27.7 0.3 38 14-58 2-43 (48)
92 COG3350 Uncharacterized conser 49.0 7.1 0.00015 28.0 0.5 11 39-49 28-38 (53)
93 cd02335 ZZ_ADA2 Zinc finger, Z 46.6 5.7 0.00012 27.8 -0.3 29 14-50 2-34 (49)
94 PF07305 DUF1454: Protein of u 45.2 1E+02 0.0023 28.1 7.3 74 254-341 114-187 (200)
95 cd02340 ZZ_NBR1_like Zinc fing 44.3 8.4 0.00018 26.3 0.3 34 14-58 2-38 (43)
96 PF13248 zf-ribbon_3: zinc-rib 44.2 12 0.00025 22.6 0.9 18 12-29 2-22 (26)
97 COG5406 Nucleosome binding fac 44.0 77 0.0017 34.2 7.2 74 158-235 307-385 (1001)
98 PF00254 FKBP_C: FKBP-type pep 43.8 34 0.00075 26.6 3.8 52 220-280 2-60 (94)
99 PRK14890 putative Zn-ribbon RN 43.8 12 0.00026 27.4 1.0 22 14-35 27-48 (59)
100 PF12855 Ecl1: Life-span regul 43.3 13 0.00029 25.5 1.1 17 37-53 21-37 (43)
101 COG1996 RPC10 DNA-directed RNA 43.2 9.6 0.00021 26.9 0.4 22 9-30 3-31 (49)
102 cd02345 ZZ_dah Zinc finger, ZZ 43.0 7.9 0.00017 27.2 -0.0 37 14-58 2-44 (49)
103 KOG2858 Uncharacterized conser 43.0 10 0.00022 37.7 0.7 35 7-49 12-47 (390)
104 COG2888 Predicted Zn-ribbon RN 42.3 12 0.00026 27.5 0.8 21 15-35 30-50 (61)
105 PF09538 FYDLN_acid: Protein o 42.0 12 0.00026 31.0 0.9 22 12-33 9-36 (108)
106 PF09297 zf-NADH-PPase: NADH p 40.6 11 0.00024 23.8 0.4 20 12-31 3-29 (32)
107 PF05184 SapB_1: Saposin-like 40.4 55 0.0012 21.1 3.8 34 154-187 3-36 (39)
108 COG4068 Uncharacterized protei 39.2 13 0.00029 27.2 0.6 23 24-48 9-31 (64)
109 PF12773 DZR: Double zinc ribb 39.2 19 0.00041 24.9 1.5 31 11-43 11-47 (50)
110 cd04938 TGS_Obg-like TGS_Obg-l 38.7 57 0.0012 25.1 4.2 47 169-231 28-74 (76)
111 PRK14891 50S ribosomal protein 38.1 15 0.00033 31.2 0.9 37 11-50 3-41 (131)
112 PF10571 UPF0547: Uncharacteri 37.0 17 0.00038 22.0 0.8 17 14-30 2-21 (26)
113 cd02334 ZZ_dystrophin Zinc fin 36.3 11 0.00024 26.6 -0.2 29 14-50 2-34 (49)
114 PRK00398 rpoP DNA-directed RNA 36.0 17 0.00036 24.9 0.7 21 11-31 2-29 (46)
115 cd02344 ZZ_HERC2 Zinc finger, 35.9 12 0.00025 26.0 -0.1 35 14-58 2-40 (45)
116 PRK01490 tig trigger factor; P 35.4 1.7E+02 0.0037 29.9 8.4 75 172-279 131-209 (435)
117 cd02338 ZZ_PCMF_like Zinc fing 35.2 12 0.00026 26.3 -0.1 29 14-50 2-34 (49)
118 TIGR00115 tig trigger factor. 34.0 1.9E+02 0.0041 29.3 8.4 75 172-279 119-198 (408)
119 PF03833 PolC_DP2: DNA polymer 33.2 14 0.00031 40.8 0.0 40 4-47 647-687 (900)
120 PRK14559 putative protein seri 32.0 26 0.00057 38.0 1.8 31 12-44 15-46 (645)
121 PRK14714 DNA polymerase II lar 31.5 22 0.00047 41.2 1.1 24 141-164 837-860 (1337)
122 PF13717 zinc_ribbon_4: zinc-r 31.5 23 0.00051 23.1 0.8 20 12-31 2-33 (36)
123 smart00659 RPOLCX RNA polymera 30.4 23 0.00051 24.3 0.7 19 12-30 2-26 (44)
124 PF05142 DUF702: Domain of unk 29.8 20 0.00043 31.5 0.3 17 12-28 4-20 (154)
125 PF11023 DUF2614: Protein of u 29.4 21 0.00046 29.7 0.4 21 12-32 69-94 (114)
126 TIGR02300 FYDLN_acid conserved 29.4 26 0.00056 29.8 1.0 21 12-32 9-35 (129)
127 COG4416 Com Mu-like prophage p 29.2 16 0.00034 26.3 -0.3 22 13-34 5-35 (60)
128 PF04181 RPAP2_Rtr1: Rtr1/RPAP 29.1 26 0.00057 27.0 0.9 12 39-50 59-70 (79)
129 cd02339 ZZ_Mind_bomb Zinc fing 28.9 17 0.00037 25.1 -0.2 35 14-58 2-40 (45)
130 PF02829 3H: 3H domain; Inter 28.8 1.3E+02 0.0027 24.5 4.8 68 228-297 22-96 (98)
131 PF09506 Salt_tol_Pase: Glucos 28.7 2E+02 0.0043 28.8 6.9 52 143-194 97-148 (381)
132 TIGR02098 MJ0042_CXXC MJ0042 f 27.6 31 0.00067 22.4 0.9 20 12-31 2-33 (38)
133 PF03604 DNA_RNApol_7kD: DNA d 26.8 34 0.00075 21.9 1.0 17 14-30 2-24 (32)
134 PF10415 FumaraseC_C: Fumarase 26.7 87 0.0019 22.5 3.2 35 150-184 10-49 (55)
135 PF04945 YHS: YHS domain; Int 26.5 27 0.00059 23.9 0.5 12 39-50 25-36 (47)
136 TIGR02399 salt_tol_Pase glucos 26.5 2.2E+02 0.0048 28.6 6.8 52 143-194 103-154 (389)
137 COG1054 Predicted sulfurtransf 26.1 49 0.0011 32.4 2.3 47 4-55 235-285 (308)
138 PF10122 Mu-like_Com: Mu-like 26.0 23 0.00049 25.2 0.0 23 13-35 5-36 (51)
139 PF01155 HypA: Hydrogenase exp 25.9 21 0.00046 29.6 -0.2 23 12-34 70-97 (113)
140 PF07754 DUF1610: Domain of un 25.9 33 0.00072 20.5 0.7 8 23-30 16-23 (24)
141 PRK12380 hydrogenase nickel in 25.2 35 0.00076 28.4 1.0 23 12-34 70-97 (113)
142 PF12631 GTPase_Cys_C: Catalyt 25.1 1.5E+02 0.0033 22.3 4.5 42 253-294 10-51 (73)
143 PF03477 ATP-cone: ATP cone do 25.1 39 0.00085 26.2 1.3 35 157-191 40-74 (90)
144 PF13719 zinc_ribbon_5: zinc-r 23.5 40 0.00087 22.1 0.9 9 23-31 25-33 (37)
145 TIGR00100 hypA hydrogenase nic 22.6 42 0.00091 27.9 1.0 23 12-34 70-97 (115)
146 PF14205 Cys_rich_KTR: Cystein 22.4 36 0.00078 24.6 0.5 21 14-34 6-39 (55)
147 PF09723 Zn-ribbon_8: Zinc rib 22.3 45 0.00098 22.4 1.0 23 13-35 6-38 (42)
148 cd01669 TGS_Ygr210_C TGS_Ygr21 22.3 2.3E+02 0.0049 21.7 5.0 48 169-231 27-74 (76)
149 PF02824 TGS: TGS domain; Int 21.7 96 0.0021 22.4 2.7 46 169-231 13-58 (60)
150 PF14446 Prok-RING_1: Prokaryo 21.5 46 0.00099 24.1 0.9 21 11-31 4-29 (54)
151 TIGR00354 polC DNA polymerase, 20.7 45 0.00098 37.6 1.0 33 7-42 620-653 (1095)
152 KOG2611 Neurochondrin/leucine- 20.4 49 0.0011 34.6 1.2 70 225-294 583-662 (698)
153 PRK00464 nrdR transcriptional 20.3 2.5E+02 0.0055 24.7 5.5 39 154-192 84-122 (154)
154 KOG1705 Uncharacterized conser 20.1 41 0.00089 26.9 0.4 33 12-46 43-76 (110)
155 COG0544 Tig FKBP-type peptidyl 20.1 2E+02 0.0043 29.9 5.5 45 172-240 131-175 (441)
No 1
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-114 Score=802.45 Aligned_cols=355 Identities=62% Similarity=1.061 Sum_probs=341.4
Q ss_pred cccccccc--cCCccccccchhhccCCCCCCCcccChhHhhhhhHHHHHhhhhhccCCCCCCCCCCccccccchhcccCC
Q 016390 10 TTSLSCVR--CGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQ 87 (390)
Q Consensus 10 ~~~~~c~~--c~~~~~~~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (390)
.....|++ |++++.||||+|+|++|+ .+|||+|+|||.+|.+||++|.++.. ...+
T Consensus 4 ~~~~~c~~~~c~~~a~l~Cp~c~~~~i~--~~~fc~q~cf~~~w~~hK~~h~~~~~--------------------~~~~ 61 (369)
T KOG2738|consen 4 IAKISCEGLQCGSEASLQCPTCLKLGIK--SAYFCAQECFKNSWLSHKKLHRKALR--------------------IRKE 61 (369)
T ss_pred chhceeeccccCChhhccCchhhhcCCC--cccccCchhhhcchhhhhhhcccchh--------------------hhhh
Confidence 45678977 999999999999999998 58999999999999999999975310 2235
Q ss_pred ccCCCCCCCcccCccccccCCCCccCCCCCCCCccccCCCCCcCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016390 88 ARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAAR 167 (390)
Q Consensus 88 ~~~~~~~~~~~~g~~~p~~~~~~~~vp~~i~~p~y~~~g~~~~e~~~~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~ 167 (390)
+.|+||+.|.|+|+||||+++|+|.||+||+||+|+.+|++.+|+.....+.+.|+++++|+.||+||+|++++|+.|..
T Consensus 62 g~~~p~p~~~~~g~Lr~~pvsprr~VP~hI~rPdya~~g~s~se~~~~~s~~i~i~~~e~ie~mR~ac~LarevLd~Aa~ 141 (369)
T KOG2738|consen 62 GQYNPWPKFRFTGPLRPGPVSPRRPVPDHIPRPDYADSGVSLSEQPEISSNEIKILDPEGIEGMRKACRLAREVLDYAAT 141 (369)
T ss_pred ccCCCCccccccCCccccCCCCCCcCCccCCCCchhhcCCcccccccccccceeccCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67899999999999999999999999999999999999999999888777778999999999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCCeEEEeeeeeeCcEEeeeeeE
Q 016390 168 MIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNET 247 (390)
Q Consensus 168 ~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT 247 (390)
+++||+|++|||+++|++++++|+|||||||++||+++|+|+|+++|||+|+.|+||+||+|+||++++++|||+|+++|
T Consensus 142 ~v~PgvTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEviCHGIPD~RpLedGDIvNiDVtvY~~GyHGDlneT 221 (369)
T KOG2738|consen 142 LVRPGVTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEVICHGIPDSRPLEDGDIVNIDVTVYLNGYHGDLNET 221 (369)
T ss_pred hcCCCccHHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhheeecCCCCcCcCCCCCEEeEEEEEEeccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCceeccceeeecCCccccCCCCCCCCCCCCc
Q 016390 248 YFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAV 327 (390)
Q Consensus 248 ~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~~~~~GHgIG~~~he~P~i~~~~~~~~~ 327 (390)
|+||+++++.++|++.++||++.||+.+|||++|+||++.|++++.++||++++.|||||||..||..|+|+||++++..
T Consensus 222 ffvG~Vde~~k~LVkvT~EcL~kaI~~~kpGv~freiG~iI~kha~~~g~sVVr~ycGHGig~~FH~~PnipHya~n~a~ 301 (369)
T KOG2738|consen 222 FFVGNVDEKAKKLVKVTRECLEKAIAIVKPGVSFREIGNIIQKHATKNGYSVVRSYCGHGIGRVFHCAPNIPHYAKNKAP 301 (369)
T ss_pred eEeeccCHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhhhcCceeehhhhccccccccccCCCchhhcccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeCCceeeccCC
Q 016390 328 GVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAHTYYIFVHV 386 (390)
Q Consensus 328 ~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe~G~EvLT~~ 386 (390)
++|++||+|||||||+.|+|++.+|||+||++|.||.+++|||||+|||++|+||||..
T Consensus 302 GvM~~G~tFTIEPmit~G~~~d~tWPD~WT~vTaDG~~sAQFEhTlLVT~tG~EILT~r 360 (369)
T KOG2738|consen 302 GVMKPGQTFTIEPMITIGTWEDITWPDDWTAVTADGKRSAQFEHTLLVTETGCEILTKR 360 (369)
T ss_pred ceeecCceEEeeeeecccccccccCCCCceEEecCCceecceeeEEEEecccceehhcc
Confidence 99999999999999999999999999999999999999999999999999999999975
No 2
>PLN03158 methionine aminopeptidase; Provisional
Probab=100.00 E-value=1.8e-103 Score=785.36 Aligned_cols=379 Identities=83% Similarity=1.401 Sum_probs=355.1
Q ss_pred CccccccccccccCCccccccchhhccCCCCCCCcccChhHhhhhhHHHHHhhhhhccCCCCCCCCCCccccccchhccc
Q 016390 6 DAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKK 85 (390)
Q Consensus 6 ~~~~~~~~~c~~c~~~~~~~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (390)
+++++.+++|++|+|+|+||||+|+|+|+++..||||||+|||.||++||.+|+.++... ......+..+.|+||+..
T Consensus 3 ~~~~~~~~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~~~~--~~~~~~~~~~~~~~~~~~ 80 (396)
T PLN03158 3 EALTTSPLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKSVHTKAKLSS--IGQNSDAPAEGWLYCLKK 80 (396)
T ss_pred cccCCCcccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHHHHHHHHHhhhhcc--cccccccccccccccccc
Confidence 456777888999999999999999999998778999999999999999999997543210 011122345689999988
Q ss_pred CCccCCCCCCCcccCccccccCCCCccCCCCCCCCccccCCCCCcCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 016390 86 GQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAA 165 (390)
Q Consensus 86 ~~~~~~~~~~~~~~g~~~p~~~~~~~~vp~~i~~p~y~~~g~~~~e~~~~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~a 165 (390)
+...++||++|+|||+||||+++|++.||+||++|+|+.+|.|..+....+.+.|.|||++||+.||+|++|++++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~p~y~~~~~~~~~~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a 160 (396)
T PLN03158 81 GQARTSKLPDFDWTGPLRPYPISPRRVVPDHIPKPDWALDGTPKIEPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAA 160 (396)
T ss_pred cccccCCCCCCCCCcccccCCCCCCCCCCccCCCCccccCCCCccccccccccceeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999998887666788899999999999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCCeEEEeeeeeeCcEEeeee
Q 016390 166 ARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLN 245 (390)
Q Consensus 166 ~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~ 245 (390)
.++++||+||.||+++++++++++|+||+++||.+||+++|+|+|++++||+|++++|++||+|+||++++++||++|++
T Consensus 161 ~~~irpGvTe~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svcts~N~~i~Hgip~~r~L~~GDiV~iDvg~~~~GY~aD~t 240 (396)
T PLN03158 161 ARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDLN 240 (396)
T ss_pred HHHccCCCCHHHHHHHHHHHHHHcCCccccccccCCCceeeecccccccCCCCCCccCCCCCEEEEEEeEEECCEEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCceeccceeeecCCccccCCCCCCCCCCC
Q 016390 246 ETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNK 325 (390)
Q Consensus 246 RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~~~~~GHgIG~~~he~P~i~~~~~~~ 325 (390)
|||+||+++++++++++++++|++++|+++|||++++||+++++++++++||+++++|+|||||+.+||.|+|++|.+++
T Consensus 241 RT~~VG~~~~e~~~l~e~~~eal~~aI~~vkPGv~~~dI~~~i~~~~~~~G~~~v~~~~GHGIG~~~He~P~i~~~~~~~ 320 (396)
T PLN03158 241 ETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVVKSYCGHGIGELFHCAPNIPHYARNK 320 (396)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCccCCccCCccccccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeCCceeeccCC
Q 016390 326 AVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAHTYYIFVHV 386 (390)
Q Consensus 326 ~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe~G~EvLT~~ 386 (390)
..++|+|||||||||||+.|.+++.+|||+||++|.||.+++|||||||||++|+|+||..
T Consensus 321 ~~~~l~~GMVfTIEP~i~~g~~~~~~~~d~wt~~t~dG~~~aq~E~tvlVTe~G~EiLT~~ 381 (396)
T PLN03158 321 AVGVMKAGQVFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTAR 381 (396)
T ss_pred CCCEecCCcEEEECCeeccCcccceecCCCceEEecCCceeeEeeeEEEEeCCcceECCCC
Confidence 7789999999999999999999999999999999999999999999999999999999973
No 3
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-63 Score=464.78 Aligned_cols=249 Identities=44% Similarity=0.699 Sum_probs=239.6
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCC
Q 016390 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD 219 (390)
Q Consensus 140 r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~ 219 (390)
+.+|+++||+.||+|++|++++++.+.+.++||+|+.||+++++++++++|++|++++|.+||..+|+|+|+++|||+|+
T Consensus 3 i~ikt~~eiek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe~v~HgiP~ 82 (255)
T COG0024 3 ISIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNEVVAHGIPG 82 (255)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhheeeecCCC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCC-HHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCC
Q 016390 220 -SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNAD-EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297 (390)
Q Consensus 220 -~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~-~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~ 297 (390)
+++|++||+|+||+|+.++||++|.++||.||+.+ +..++|.+++++|++++|+.+|||++++||+++|+++++++||
T Consensus 83 d~~vlk~GDiv~IDvg~~~dG~~~Dsa~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l~~Ig~aIq~~~~~~G~ 162 (255)
T COG0024 83 DKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGF 162 (255)
T ss_pred CCcccCCCCEEEEEEEEEECCeeeeEEEEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999999666 5777799999999999999999999999999999999999999
Q ss_pred ceeccceeeecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccC-CCceEEeeCCeeeEEEEEEEEEe
Q 016390 298 SVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWP-DGWTAVTADGKRSAQFEHTLLVS 376 (390)
Q Consensus 298 ~~~~~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~-d~wt~~t~~g~~~~~~EdtvlVT 376 (390)
++++.|+|||||..+|+.|+++||.++....+|++|||||||||++.|++....++ |+|+++|.||..++||||||+||
T Consensus 163 ~vVr~~~GHgig~~~He~p~ip~y~~~~~~~~l~~Gmv~aIEPmi~~G~~~~~~~~~d~Wt~~t~d~~~~aq~EHTv~Vt 242 (255)
T COG0024 163 SVVRNLTGHGIGRELHEEPSIPNYGKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPSDRWTLVTKDGSLSAQFEHTVIVT 242 (255)
T ss_pred EEeecccCCccCcccCCCCeeccccCCCCCcccCCCCEEEEeeEEEcCCCceEecCCCCeEEEeCCCCEEeEEEEEEEEe
Confidence 99999999999999999999999987666789999999999999999999999999 99999999999999999999999
Q ss_pred CCceeeccCCcc
Q 016390 377 AHTYYIFVHVFY 388 (390)
Q Consensus 377 e~G~EvLT~~p~ 388 (390)
++|+|+||..+.
T Consensus 243 ~~g~eilT~~~~ 254 (255)
T COG0024 243 EDGCEILTLRPE 254 (255)
T ss_pred CCCcEEeeCCCC
Confidence 999999998764
No 4
>PRK12897 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=1.2e-57 Score=432.41 Aligned_cols=247 Identities=33% Similarity=0.561 Sum_probs=234.7
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCC
Q 016390 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD 219 (390)
Q Consensus 140 r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~ 219 (390)
..|||++||+.||+|+++++++++++.+.++||+||.||++.++..+.++|+.....+|.+||.++++|.|+..+|+.|+
T Consensus 2 ~~iKs~~EI~~~r~A~~i~~~~~~~~~~~~~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~i~~g~n~~~~H~~p~ 81 (248)
T PRK12897 2 ITIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICASVNDEMCHAFPA 81 (248)
T ss_pred ceeCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccCCCCcceEeccCCEeecCCCC
Confidence 57999999999999999999999999999999999999999999999999998765667789989999999999999999
Q ss_pred CCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCce
Q 016390 220 SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV 299 (390)
Q Consensus 220 ~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~ 299 (390)
+++|++||+|++|+++.++||++|++|||++|+++++++++|++++++++++++.+|||++++||++++++++++.||..
T Consensus 82 ~~~l~~Gd~V~iD~g~~~~GY~sD~tRT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~g~~~ 161 (248)
T PRK12897 82 DVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSV 161 (248)
T ss_pred CcccCCCCEEEEEeeEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eccceeeecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeCCc
Q 016390 300 VKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAHT 379 (390)
Q Consensus 300 ~~~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe~G 379 (390)
.++++|||||+.+||.|.++++.+.++..+|++||||||||+++.|......|.|+|++.+.+|.+++|+||||+||++|
T Consensus 162 ~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~l~~Gmv~tiEP~~~~~~~~~~~~~~~~~~~~~~g~~g~r~edtv~Vt~~G 241 (248)
T PRK12897 162 ARDFTGHGIGKEIHEEPAIFHFGKQGQGPELQEGMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITKDG 241 (248)
T ss_pred CCCeEECccCCcccCCCccCCCCCCCCCCCcCCCCEEEECCeEecCCCceEECCCCcEEEcCCCCeEeecceEEEEeCCc
Confidence 88999999999999999998765556678999999999999999887777788999999999999999999999999999
Q ss_pred eeeccCC
Q 016390 380 YYIFVHV 386 (390)
Q Consensus 380 ~EvLT~~ 386 (390)
+|+||..
T Consensus 242 ~e~lt~~ 248 (248)
T PRK12897 242 PIILTKL 248 (248)
T ss_pred cEEeecC
Confidence 9999974
No 5
>PRK07281 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=1.7e-57 Score=438.39 Aligned_cols=251 Identities=27% Similarity=0.495 Sum_probs=234.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCC----CcCCceeeeCCCCccc
Q 016390 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY----HFFPKSCCTSVNEVIC 214 (390)
Q Consensus 139 ~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~----~~fp~~v~~g~n~~~~ 214 (390)
|+.|||++||+.||+|++|++++++++.+.++||+||.||++.++..+.++|++|..+++ .+||.++|+|.|+.++
T Consensus 1 m~~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~pG~te~ei~~~~~~~~~~~g~~~~~~G~~~~~~~f~~~v~~G~n~~~~ 80 (286)
T PRK07281 1 MITLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPYATCCGLNDEVA 80 (286)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCcccccCCCCcccCCCcceEEecccccc
Confidence 457999999999999999999999999999999999999999999999999998877654 5699999999999999
Q ss_pred cCCCCCCcCCCCCeEEEeeee---------------------------eeCcEEeeeeeEEEecCCCHHHHHHHHHHHHH
Q 016390 215 HGIPDSRKLEDGDIVNIDVTV---------------------------YYKGVHGDLNETYFVGNADEASRQLVQCTYEC 267 (390)
Q Consensus 215 Hg~p~~r~L~~GDiV~iD~g~---------------------------~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a 267 (390)
|+.|++++|++||+|+||+++ .++||++|++|||++|++++++++++++++++
T Consensus 81 H~~p~~~~l~~Gd~v~iD~g~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~gy~~D~~rT~~vG~~~~~~~~l~~~~~ea 160 (286)
T PRK07281 81 HAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEA 160 (286)
T ss_pred CCCCCCcCcCCCCEEEEEecccccccccccccccccccccccccccccccCCEEeeeEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999999999999999997 48999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcHhHHHHHHHHHHHHcCCceeccceeeecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCc
Q 016390 268 LEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVW 347 (390)
Q Consensus 268 ~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~~~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~ 347 (390)
++++|+.+|||++++||++++++++++.||..+++++|||||+.+||.|.++++.+.+...+|+|||||+|||+++.+.+
T Consensus 161 ~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~~~~~~GHGIGl~~hE~P~i~~~~~~~~~~~Le~GMV~tiEPgiy~~~~ 240 (286)
T PRK07281 161 MYRGIEQAVVGNRIGDIGAAIQEYAESRGYGVVRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMVLTIEPMINTGTW 240 (286)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHcCCccCCCeeeeeCCCccCCCCcCCCcccCCCCCEECCCCEEEECCeeEcCCc
Confidence 99999999999999999999999999999998888999999999999999987655567789999999999999999766
Q ss_pred c-ccccCCCceEEeeCCeeeEEEEEEEEEeCCceeeccCCccC
Q 016390 348 R-DRMWPDGWTAVTADGKRSAQFEHTLLVSAHTYYIFVHVFYV 389 (390)
Q Consensus 348 ~-~~~~~d~wt~~t~~g~~~~~~EdtvlVTe~G~EvLT~~p~~ 389 (390)
. ...++|+||+++.+|..++|+|||||||++|+|+||..+..
T Consensus 241 ~~~~~~~~gw~~~~~~g~~gvr~EdtvlVT~~G~e~LT~~~~~ 283 (286)
T PRK07281 241 EIDTDMKTGWAHKTLDGGLSCQYEHQFVITKDGPVILTSQGEE 283 (286)
T ss_pred ceecccCCCceEEecCCCcEEEeccEEEEeCCcceECCCCCcc
Confidence 4 33478999999999999999999999999999999987653
No 6
>PRK12318 methionine aminopeptidase; Provisional
Probab=100.00 E-value=7.6e-56 Score=428.69 Aligned_cols=248 Identities=44% Similarity=0.752 Sum_probs=231.1
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCC--cCCceeeeCCCCccccCC
Q 016390 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH--FFPKSCCTSVNEVICHGI 217 (390)
Q Consensus 140 r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~--~fp~~v~~g~n~~~~Hg~ 217 (390)
++|||++||+.||+|++|++++++++.+.++||+||.||++++++.+.+.|+.|+.++|. +||.++++|.|+.++|+.
T Consensus 41 i~IKs~~EIe~~R~Aa~I~~~a~~a~~~~irpG~tE~Eiaa~~~~~~~~~G~~~~~~~~~~~~f~~~v~~g~n~~~~H~~ 120 (291)
T PRK12318 41 IIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYGSPPFPKTICTSLNEVICHGI 120 (291)
T ss_pred eEECCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCccccccCCCCCCcceEeeccceeecCC
Confidence 469999999999999999999999999999999999999999999999999988877774 599999999999999999
Q ss_pred CCCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCC
Q 016390 218 PDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297 (390)
Q Consensus 218 p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~ 297 (390)
|++++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++.+|||++++||++++++++++.||
T Consensus 121 p~~~~l~~GD~V~vD~g~~~~GY~aDitRT~~vG~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a~~~~~~~~G~ 200 (291)
T PRK12318 121 PNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGF 200 (291)
T ss_pred CCCCccCCCCEEEEEEeEEECcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccceeeecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccC-CCceEEeeCCeeeEEEEEEEEEe
Q 016390 298 SVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWP-DGWTAVTADGKRSAQFEHTLLVS 376 (390)
Q Consensus 298 ~~~~~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~-d~wt~~t~~g~~~~~~EdtvlVT 376 (390)
....+++|||||+.+||.|.++.+. +.+..+|++||||+|||+++.+.+....++ |+|++.+.||..++|+||||+||
T Consensus 201 ~~~~~~~GHgIGl~~hE~P~i~~~~-~~~~~~L~~GMV~~iEP~i~~~~~~g~~~~~~~~~~~~~~g~~~~~~edtv~VT 279 (291)
T PRK12318 201 SVVDQFVGHGVGIKFHENPYVPHHR-NSSKIPLAPGMIFTIEPMINVGKKEGVIDPINHWEARTCDNQPSAQWEHTILIT 279 (291)
T ss_pred ccCCCcccCCcCccccCCCcccCcC-CCCCCEeCCCCEEEECCEEEcCCCceEEecCCCcEEEecCCCeeeeeeeEEEEc
Confidence 9778889999999999999998653 456689999999999999998755444444 88999999999999999999999
Q ss_pred CCceeeccCCcc
Q 016390 377 AHTYYIFVHVFY 388 (390)
Q Consensus 377 e~G~EvLT~~p~ 388 (390)
++|+|+||..|.
T Consensus 280 e~G~e~LT~~~~ 291 (291)
T PRK12318 280 ETGYEILTLLDK 291 (291)
T ss_pred CCcceeCCCCCC
Confidence 999999999874
No 7
>PRK12896 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=1.9e-55 Score=418.31 Aligned_cols=249 Identities=39% Similarity=0.658 Sum_probs=235.2
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCC
Q 016390 138 HVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGI 217 (390)
Q Consensus 138 ~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~ 217 (390)
++++|||++||+.||+|+++++++++.+.+.++||+||.||++.+.+.+.++|+.+++..+.+||.++++|.|...+|+.
T Consensus 6 ~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~h~~ 85 (255)
T PRK12896 6 RGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCISVNEEVAHGI 85 (255)
T ss_pred CceeECCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHCCCEeCcccCCCCCcceEecCCCeeEecC
Confidence 45789999999999999999999999999999999999999999999999999998877788899999999999999999
Q ss_pred CCCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCC
Q 016390 218 PDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297 (390)
Q Consensus 218 p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~ 297 (390)
|++++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++.+|||++++||++++++++++.|+
T Consensus 86 p~~~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~G~ 165 (255)
T PRK12896 86 PGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGY 165 (255)
T ss_pred CCCccCCCCCEEEEEEeEEECcEEEeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccceeeecCCccccCCCCC-CCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEe
Q 016390 298 SVVKSYCGHGIGELFHCAPNIP-HYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376 (390)
Q Consensus 298 ~~~~~~~GHgIG~~~he~P~i~-~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVT 376 (390)
...++++|||||+.+||.|.+. ++....++.+|++||||+|||+++.|..+...|+|+|++.+.+|.+++|+|||||||
T Consensus 166 ~~~~~~~GHgiG~~~he~p~~~~~~~~~~~~~~le~GmV~~iEp~i~~g~~~~~~~~~~~~~~~~~~~~~~~~edtv~vt 245 (255)
T PRK12896 166 SVVRDLTGHGVGRSLHEEPSVILTYTDPLPNRLLRPGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVT 245 (255)
T ss_pred EeccCcccCCcCcccccCCCccccCCCCCCCCEecCCcEEEEeceEEcCCCceEEcCCCCEEEecCCCeEEEEEEEEEEc
Confidence 9888899999999999999543 343345678999999999999999998888999999999999999999999999999
Q ss_pred CCceeeccCC
Q 016390 377 AHTYYIFVHV 386 (390)
Q Consensus 377 e~G~EvLT~~ 386 (390)
++|+|+||..
T Consensus 246 ~~G~e~Lt~~ 255 (255)
T PRK12896 246 RDGPEILTDR 255 (255)
T ss_pred CCcceecCCC
Confidence 9999999974
No 8
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=100.00 E-value=3.9e-55 Score=414.61 Aligned_cols=246 Identities=47% Similarity=0.795 Sum_probs=233.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCC
Q 016390 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDS 220 (390)
Q Consensus 141 ~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~ 220 (390)
+|||++||++||+|++|++++++.+.+.++||+||.||++.+++.+.++|+.+...++.+||.++++|.|..++|+.|++
T Consensus 2 ~iKs~~Ei~~~r~A~~i~~~~~~~~~~~i~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~H~~~~~ 81 (247)
T TIGR00500 2 SLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCISVNEVVIHGIPDK 81 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHCCCCccccCCCCCCceeEeccccEEEecCCCC
Confidence 69999999999999999999999999999999999999999999999999988777778899999999999999999999
Q ss_pred CcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCcee
Q 016390 221 RKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300 (390)
Q Consensus 221 r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~ 300 (390)
++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++.+|||++++||++++++++++.|+...
T Consensus 82 ~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~ 161 (247)
T TIGR00500 82 KVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVV 161 (247)
T ss_pred cccCCCCEEEEEEEEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccceeeecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeCCce
Q 016390 301 KSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAHTY 380 (390)
Q Consensus 301 ~~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe~G~ 380 (390)
++++|||||+.+||.|.++.+....++.+|++||||+|||+++.+......++++|++...+|.+++|+|||||||++|+
T Consensus 162 ~~~~GHgiG~~~~e~p~i~~~~~~~~~~~l~~gmv~~iEp~i~~~~~~~~~~~~~~~~~~~~~~~g~ried~v~Vt~~G~ 241 (247)
T TIGR00500 162 REYCGHGIGRKFHEEPQIPNYGKKFTNVRLKEGMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITDNGP 241 (247)
T ss_pred cCccCCccCcccCCCCccCCcCcCCCCCEecCCCEEEEeeEEEcCCCcEEECCCCCEEEccCCCeEEEEeEEEEEcCCcc
Confidence 88899999999999999887654556789999999999999999877777788999999999999999999999999999
Q ss_pred eeccCC
Q 016390 381 YIFVHV 386 (390)
Q Consensus 381 EvLT~~ 386 (390)
|+||.+
T Consensus 242 e~Lt~~ 247 (247)
T TIGR00500 242 EILTER 247 (247)
T ss_pred EEccCC
Confidence 999974
No 9
>PRK05716 methionine aminopeptidase; Validated
Probab=100.00 E-value=7e-55 Score=413.74 Aligned_cols=251 Identities=50% Similarity=0.804 Sum_probs=238.1
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCC
Q 016390 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP 218 (390)
Q Consensus 139 ~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p 218 (390)
+..|||++||+.||+|++|++++++.+.+.++||+||.||++.+.+.+.++|+.+.+.++..||.++++|.|+..+|+.|
T Consensus 2 ~~~iKs~~Ei~~~r~A~~i~~~~~~~a~~~i~pG~se~ela~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~~~~h~~~ 81 (252)
T PRK05716 2 AITIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGFPKSICTSVNEVVCHGIP 81 (252)
T ss_pred ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHCCCEecccCCCCCCcCeEecccceeecCCC
Confidence 35799999999999999999999999999999999999999999999999998877666778888999999999999999
Q ss_pred CCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCc
Q 016390 219 DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS 298 (390)
Q Consensus 219 ~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~ 298 (390)
++++|++||+|.+|+++.++||++|++|||++|+++++++++++++.++++++++.+|||++++||+++++++++++|+.
T Consensus 82 ~~~~l~~Gd~v~id~g~~~~gY~~d~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~g~~ 161 (252)
T PRK05716 82 SDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFS 161 (252)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccceeeecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeCC
Q 016390 299 VVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAH 378 (390)
Q Consensus 299 ~~~~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe~ 378 (390)
..++++|||||+.+||.|.++.|...+++.+|+|||||+|||+++.+.+....|+++|++.+.+|.+++++||||+||++
T Consensus 162 ~~~~~~GHgiG~~~~e~p~~~~~~~~~~~~~le~Gmv~~vEp~i~~~~~~~~~~~~~~~~~~~~g~~g~~~ed~v~Vt~~ 241 (252)
T PRK05716 162 VVREYCGHGIGRKFHEEPQIPHYGAPGDGPVLKEGMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTED 241 (252)
T ss_pred eecCccccccCCccCCCCccCcCCCCCCCCEecCCCEEEEccEEEcCCCceEEcCCCCEEEccCCCcEEeeeeEEEEcCC
Confidence 87888999999999999998877556678899999999999999998888888999999999999999999999999999
Q ss_pred ceeeccCCccC
Q 016390 379 TYYIFVHVFYV 389 (390)
Q Consensus 379 G~EvLT~~p~~ 389 (390)
|+|+||..|+.
T Consensus 242 G~e~Lt~~~~~ 252 (252)
T PRK05716 242 GPEILTLRPEE 252 (252)
T ss_pred ccEEeeCCCCC
Confidence 99999999863
No 10
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00 E-value=1.7e-50 Score=380.60 Aligned_cols=238 Identities=53% Similarity=0.857 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCC
Q 016390 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (390)
Q Consensus 148 Ie~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GD 227 (390)
|+.||+|+++++++++++.+.++||+||.||++.+.+.+.++|+.+..+++..||..+++|.|+..+|+.|++++|++||
T Consensus 1 I~~lr~A~~i~~~~~~~~~~~~~pG~tE~ev~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~l~~Gd 80 (238)
T cd01086 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICTSVNEVVCHGIPDDRVLKDGD 80 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCcceecCCCCceeCCCCCCcccCCCC
Confidence 68999999999999999999999999999999999999999999988777888998999999999999999999999999
Q ss_pred eEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCceeccceeee
Q 016390 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHG 307 (390)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~~~~~GHg 307 (390)
+|.+|+++.++||++|++|||++|+++++++++++.+.++++++++++|||++++||++++++++++.|+....+++|||
T Consensus 81 ~v~id~g~~~~GY~ad~~RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~G~~~~~~~~GHg 160 (238)
T cd01086 81 IVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHG 160 (238)
T ss_pred EEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcceecCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777889999
Q ss_pred cCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeCCceeeccC
Q 016390 308 IGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAHTYYIFVH 385 (390)
Q Consensus 308 IG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe~G~EvLT~ 385 (390)
||+.+||.|.+..+....++.+|++||||+|||+++.+.+....|+++|+..+.+|.+++|+|||||||++|+|+||.
T Consensus 161 iG~~~~e~p~~~~~~~~~~~~~le~Gmv~~iep~i~~~~~~~~~~~~~~~~~~~~g~~g~~~edtv~Vte~G~e~Lt~ 238 (238)
T cd01086 161 IGRKFHEEPQIPNYGRPGTGPKLKPGMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITEDGPEILTL 238 (238)
T ss_pred CCCccccCCCcCCccCCCCCCEecCCCEEEEeeEEECCCCceEECCCCCEEEcCCCCEEEeeeeEEEEcCCcceeCCC
Confidence 999999999987555556789999999999999999988888889999999988999999999999999999999985
No 11
>PRK09795 aminopeptidase; Provisional
Probab=100.00 E-value=4.6e-50 Score=400.10 Aligned_cols=227 Identities=23% Similarity=0.385 Sum_probs=210.3
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCcccc
Q 016390 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (390)
Q Consensus 136 ~~~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H 215 (390)
+..+|+|||++||+.||+|++|++++++.+.+.++||+||.||++.++..+.++|+.+. +|+++|++|.|...+|
T Consensus 121 ~~~lR~iKs~~Ei~~~r~a~~i~~~~~~~~~~~i~~G~tE~e~~~~~~~~~~~~G~~~~-----~f~~iv~sG~~~~~ph 195 (361)
T PRK09795 121 PDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKA-----SFDTIVASGWRGALPH 195 (361)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHCCCCcC-----CCCeEEEEeccccccC
Confidence 46789999999999999999999999999999999999999999999999999998753 6888999999999999
Q ss_pred CCCCCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecC--CCH---HHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHH
Q 016390 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN--ADE---ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINR 290 (390)
Q Consensus 216 g~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~--~~~---~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~ 290 (390)
+.|++++|++||+|++|+|+.|+||++|++|||++|. +++ +++++|+++.++++++++.+|||++++||++++++
T Consensus 196 ~~~~~~~l~~gd~v~~d~g~~~~gY~sd~tRt~~~g~~~~~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~ 275 (361)
T PRK09795 196 GKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARR 275 (361)
T ss_pred CCCCCceecCCCEEEEEeccccCCEeecceEEEEeCCcCCchhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999973 333 37899999999999999999999999999999999
Q ss_pred HHHHcCCc-eeccceeeecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEE
Q 016390 291 HATMSGFS-VVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQF 369 (390)
Q Consensus 291 ~~~~~G~~-~~~~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~ 369 (390)
++++.||. ...|.+|||||+.+||.|.+. .+++.+|++||||+|||++|. +|.+++|+
T Consensus 276 ~~~~~g~~~~~~h~~GHgiGl~~he~p~i~----~~~~~~l~~gmv~~iEpgiy~-----------------~~~~gvri 334 (361)
T PRK09795 276 VITEAGYGDYFGHNTGHAIGIEVHEDPRFS----PRDTTTLQPGMLLTVEPGIYL-----------------PGQGGVRI 334 (361)
T ss_pred HHHHcCCCccCCCCCCccCCccccCCCCcC----CCCCCCcCCCCEEEECCEEEe-----------------CCCCEEEE
Confidence 99999997 456789999999999999885 356789999999999999986 36678999
Q ss_pred EEEEEEeCCceeeccCCcc
Q 016390 370 EHTLLVSAHTYYIFVHVFY 388 (390)
Q Consensus 370 EdtvlVTe~G~EvLT~~p~ 388 (390)
||||+||++|+|+||..|+
T Consensus 335 Ed~v~vt~~G~e~Lt~~~~ 353 (361)
T PRK09795 335 EDVVLVTPQGAEVLYAMPK 353 (361)
T ss_pred eeEEEECCCCcEeCcCCCc
Confidence 9999999999999999886
No 12
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-48 Score=389.70 Aligned_cols=231 Identities=28% Similarity=0.448 Sum_probs=213.7
Q ss_pred CCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCc
Q 016390 133 NSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV 212 (390)
Q Consensus 133 ~~~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~ 212 (390)
...+..+|+|||+.||+.||+|+++++.++..+++.++||+||.||.+.++..+++.|+... +|+++|++|.|..
T Consensus 145 ~~~i~~lR~iKs~~EI~~ir~A~~i~~~a~~~~~~~~~~g~tE~ev~a~l~~~~~~~G~~~~-----sf~~iv~~G~n~a 219 (384)
T COG0006 145 SDLVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGP-----SFDTIVASGENAA 219 (384)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCcc-----CcCcEEecccccc
Confidence 33457799999999999999999999999999999999999999999999999999996542 5889999999999
Q ss_pred cccCCCCCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHH
Q 016390 213 ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292 (390)
Q Consensus 213 ~~Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~ 292 (390)
++|+.|+++.+++||+|+||+|+.|+||++|+||||++|+++++++++|+.++++++++++++|||++++||+.++++++
T Consensus 220 ~pH~~~~~~~~~~gd~vliD~G~~~~gY~sDiTRT~~~G~~~~~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar~~i 299 (384)
T COG0006 220 LPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVL 299 (384)
T ss_pred CcCCCCCcccccCCCEEEEEeeeEECCccccceeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCc-eeccceeeecC--CccccCCC-CCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEE
Q 016390 293 TMSGFS-VVKSYCGHGIG--ELFHCAPN-IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQ 368 (390)
Q Consensus 293 ~~~G~~-~~~~~~GHgIG--~~~he~P~-i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~ 368 (390)
.+.|+. ...|.+|||+| +.+||.|. +. ..+..+|+|||||++||+++. +|.+|++
T Consensus 300 ~~~g~~~~~~h~~GHgvG~~l~vhE~p~~~~----~~~~~~L~~GMv~t~Epg~y~-----------------~g~~Gir 358 (384)
T COG0006 300 EKAGYGLYFLHGTGHGVGFVLDVHEHPQYLS----PGSDTTLEPGMVFSIEPGIYI-----------------PGGGGVR 358 (384)
T ss_pred HhcCCcccccCCccccCCCCcccCcCccccC----CCCCccccCCcEEEecccccc-----------------CCCceEE
Confidence 998876 33455999999 99999995 54 467889999999999998876 4888999
Q ss_pred EEEEEEEeCCceeeccCCccC
Q 016390 369 FEHTLLVSAHTYYIFVHVFYV 389 (390)
Q Consensus 369 ~EdtvlVTe~G~EvLT~~p~~ 389 (390)
+||+|+||++|+|+||..|..
T Consensus 359 IEd~vlVte~G~e~LT~~~~~ 379 (384)
T COG0006 359 IEDTVLVTEDGFEVLTRVPKE 379 (384)
T ss_pred EEEEEEEcCCCceecccCCcc
Confidence 999999999999999976653
No 13
>PRK15173 peptidase; Provisional
Probab=100.00 E-value=9.6e-48 Score=377.66 Aligned_cols=227 Identities=22% Similarity=0.329 Sum_probs=204.7
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccc
Q 016390 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVIC 214 (390)
Q Consensus 135 ~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~ 214 (390)
.+.++|+|||++||+.||+|+++++++++.+.+.++||+||.||++.++.++.+.|... +..|+ ++.+|.+ ..+
T Consensus 88 ~i~~lR~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~~G~tE~el~a~~~~~~~~~g~~~----~~~~~-~i~~G~~-~~~ 161 (323)
T PRK15173 88 IFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETH----FSRFH-LISVGAD-FSP 161 (323)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCC----CCCCc-EEEECCC-Ccc
Confidence 45789999999999999999999999999999999999999999999988888776532 11233 5666766 568
Q ss_pred cCCCCCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHH
Q 016390 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (390)
Q Consensus 215 Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~ 294 (390)
|+.|++++|++||+|++|+++.++||++|++|||++|+++++++++|+++.++++++++.+|||++++||++++++++++
T Consensus 162 h~~~~~~~l~~Gd~V~iD~g~~~~GY~aDitRT~~vG~p~~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~ 241 (323)
T PRK15173 162 KLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKK 241 (323)
T ss_pred CCCCCCCccCCCCEEEEEeCccCCCEeeeeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc-eeccceeeecCC--ccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEE
Q 016390 295 SGFS-VVKSYCGHGIGE--LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEH 371 (390)
Q Consensus 295 ~G~~-~~~~~~GHgIG~--~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~Ed 371 (390)
.|+. ..++++|||||+ .+||.|.+.. .++.+|++||||+|||+++. .|.+++++||
T Consensus 242 ~G~~~~~~~~~GHGiG~~lg~~E~P~i~~----~~~~~Le~GMV~tiEPgiy~-----------------~g~ggvriED 300 (323)
T PRK15173 242 SGLPNYNRGHLGHGNGVFLGLEESPFVST----HATESFTSGMVLSLETPYYG-----------------YNLGSIMIED 300 (323)
T ss_pred cCCccccCCCCCCcCCCCCCcCCCCCCCC----CCCCccCCCCEEEECCEEEc-----------------CCCcEEEEee
Confidence 9997 566789999996 7899999863 45689999999999999885 2556899999
Q ss_pred EEEEeCCceeeccCCcc
Q 016390 372 TLLVSAHTYYIFVHVFY 388 (390)
Q Consensus 372 tvlVTe~G~EvLT~~p~ 388 (390)
||+||++|+|+||..|.
T Consensus 301 tvlVTe~G~e~LT~~p~ 317 (323)
T PRK15173 301 MILINKEGIEFLSKLPR 317 (323)
T ss_pred EEEEcCCcceeCCCCCc
Confidence 99999999999999885
No 14
>PRK10879 proline aminopeptidase P II; Provisional
Probab=100.00 E-value=1.5e-47 Score=390.23 Aligned_cols=236 Identities=20% Similarity=0.298 Sum_probs=206.4
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCcccc
Q 016390 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (390)
Q Consensus 136 ~~~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H 215 (390)
+.++|+|||++||+.||+|++++.+++.++++.++||+||.||++.+...+.++|+... +|+.+|++|.|..++|
T Consensus 167 l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~~~pG~tE~ei~a~~~~~~~~~G~~~~-----~~~~iv~~G~na~~~H 241 (438)
T PRK10879 167 VHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARYP-----SYNTIVGSGENGCILH 241 (438)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHCCCCCC-----CCCcEEEEcCcccccc
Confidence 45689999999999999999999999999999999999999999999999999987532 5788999999999999
Q ss_pred CCCCCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEe-cCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHH-
Q 016390 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT- 293 (390)
Q Consensus 216 g~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~v-G~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~- 293 (390)
+.|++++|++||+|+||+|+.++||++|++|||+| |+++++++++|++++++++++|+.+|||+++++|++++.+++.
T Consensus 242 ~~~~~~~l~~GDlVliD~G~~~~GY~sDitRT~~v~G~~s~~q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~ 321 (438)
T PRK10879 242 YTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVS 321 (438)
T ss_pred CCCCccccCCCCEEEEEeCeEECCEEEEeEEEEEECCcCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 8999999999999999999999999999999999999886653
Q ss_pred ---H--------------cCCc-eeccceeeecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCC
Q 016390 294 ---M--------------SGFS-VVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDG 355 (390)
Q Consensus 294 ---~--------------~G~~-~~~~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~ 355 (390)
+ .++. ...|.+||+||+.+|+.|.+. .+...+|+|||||||||+||.... ..||+.
T Consensus 322 ~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iGldvHd~~~~~----~~~~~~L~~GmV~tvEPgiY~~~~--~~~~~~ 395 (438)
T PRK10879 322 GLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDVHDVGVYG----QDRSRILEPGMVLTVEPGLYIAPD--ADVPEQ 395 (438)
T ss_pred HHHHhCCcCCCHHHHHHhccCccccCCCCccccCcCcCcCCCcC----CCCCCcCCCCCEEEECCEEEECCC--cCcccc
Confidence 2 3333 345669999999999988764 345689999999999999997421 123333
Q ss_pred ceEEeeCCeeeEEEEEEEEEeCCceeeccC-Ccc
Q 016390 356 WTAVTADGKRSAQFEHTLLVSAHTYYIFVH-VFY 388 (390)
Q Consensus 356 wt~~t~~g~~~~~~EdtvlVTe~G~EvLT~-~p~ 388 (390)
| ...|+|+||||+||++|+|+||. .|+
T Consensus 396 ~------~~~GiRiED~VlVT~~G~e~LT~~~pk 423 (438)
T PRK10879 396 Y------RGIGIRIEDDIVITETGNENLTASVVK 423 (438)
T ss_pred c------CccEEEeccEEEECCCcCeEcCccCCC
Confidence 2 33589999999999999999995 554
No 15
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=100.00 E-value=4.6e-47 Score=355.68 Aligned_cols=225 Identities=20% Similarity=0.214 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCC-CCCcCCceeeeCCCCccccCCCCCCcCCCC
Q 016390 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL-NYHFFPKSCCTSVNEVICHGIPDSRKLEDG 226 (390)
Q Consensus 148 Ie~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l-~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~G 226 (390)
|+.||+|++|++++++++.+.++||+||.||++.+++++.++|+...+. .+..+.+++++|.|+..+|+.|++++|++|
T Consensus 1 I~~ir~Aa~i~d~~~~~~~~~i~pG~tE~ei~a~~~~~~~~~ga~~~~~~~~~~~~~~v~~G~~~~~~H~~~~~r~l~~G 80 (228)
T cd01090 1 IALIRHGARIADIGGAAVVEAIREGVPEYEVALAGTQAMVREIAKTFPEVELMDTWTWFQSGINTDGAHNPVTNRKVQRG 80 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCcccccCcceEEEeeccccccCCCCCCcccCCC
Confidence 6899999999999999999999999999999999999999998753222 233344578999999999999999999999
Q ss_pred CeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCcee-cccee
Q 016390 227 DIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV-KSYCG 305 (390)
Q Consensus 227 DiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~-~~~~G 305 (390)
|+|++|+++.++||++|++|||++|+++++++++++++.++++++++.+|||++++||+++++++++++||... .+.+|
T Consensus 81 D~v~~d~g~~~~GY~ad~~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~G~~~~~~~~~G 160 (228)
T cd01090 81 DILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRYRTFGYG 160 (228)
T ss_pred CEEEEEEeEEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999853 45689
Q ss_pred eecCCccccCCCC-CCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeCCceeecc
Q 016390 306 HGIGELFHCAPNI-PHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAHTYYIFV 384 (390)
Q Consensus 306 HgIG~~~he~P~i-~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe~G~EvLT 384 (390)
||||+.+||.|.- ..+...+++.+|+|||||+|||+++.+.+ .+|.+++++||||+||++|+|+||
T Consensus 161 HgiGl~~he~~~~~g~~~~~~~~~~Le~GMV~~iEP~i~~~~~-------------~~g~gG~ried~v~Vt~~G~e~Lt 227 (228)
T cd01090 161 HSFGVLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPEG-------------QPGAGGYREHDILVINENGAENIT 227 (228)
T ss_pred cccccccccCCCccccccCCCCCCccCCCCEEEECCEEeeccc-------------CCCCcEEEeeeEEEECCCccccCc
Confidence 9999999998631 10112356789999999999999986311 136779999999999999999998
Q ss_pred C
Q 016390 385 H 385 (390)
Q Consensus 385 ~ 385 (390)
.
T Consensus 228 ~ 228 (228)
T cd01090 228 G 228 (228)
T ss_pred C
Confidence 4
No 16
>PRK14575 putative peptidase; Provisional
Probab=100.00 E-value=8.5e-47 Score=381.78 Aligned_cols=227 Identities=22% Similarity=0.320 Sum_probs=205.8
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccc
Q 016390 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVIC 214 (390)
Q Consensus 135 ~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~ 214 (390)
.+.++|+|||++||+.||+|+++++++++++.+.++||+||.||++.+++++.+.|.... ..| .++.+|.+ ..+
T Consensus 171 ~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~~----~~~-~~v~~G~~-~~~ 244 (406)
T PRK14575 171 IFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHF----SRF-HLISVGAD-FSP 244 (406)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCcC----CcC-ceEEECCC-ccc
Confidence 456789999999999999999999999999999999999999999999999888776431 122 36777776 568
Q ss_pred cCCCCCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHH
Q 016390 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (390)
Q Consensus 215 Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~ 294 (390)
|+.|++++|++||+|++|+|+.++||++|++|||++|+++++++++|+++.++++++++++|||++++||++++++++++
T Consensus 245 h~~~~~~~l~~Gd~v~iD~g~~~~GY~sditRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~~~ 324 (406)
T PRK14575 245 KLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKK 324 (406)
T ss_pred CCCCCCCcCCCCCEEEEEeceEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc-eeccceeeecCC--ccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEE
Q 016390 295 SGFS-VVKSYCGHGIGE--LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEH 371 (390)
Q Consensus 295 ~G~~-~~~~~~GHgIG~--~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~Ed 371 (390)
.||. ..++++|||||+ .+||.|.+.. ++..+|++||||+|||++|. .|.+++++||
T Consensus 325 ~G~~~~~~~~~GHGiG~~lg~~e~P~i~~----~~~~~Le~GMv~tiEpgiy~-----------------~g~gGvriED 383 (406)
T PRK14575 325 SGLPNYNRGHLGHGNGVFLGLEESPFVST----HATESFTSGMVLSLETPYYG-----------------YNLGSIMIED 383 (406)
T ss_pred cCCccccCCCCCCcccCCCCCccCCCCCC----CCCCCcCCCCEEEECCeeec-----------------CCCcEEEEEe
Confidence 9997 556789999995 8899999873 56789999999999999886 2567899999
Q ss_pred EEEEeCCceeeccCCcc
Q 016390 372 TLLVSAHTYYIFVHVFY 388 (390)
Q Consensus 372 tvlVTe~G~EvLT~~p~ 388 (390)
||+||++|+|+||..|.
T Consensus 384 tvlVT~~G~e~LT~~p~ 400 (406)
T PRK14575 384 MILINKEGIEFLSKLPR 400 (406)
T ss_pred EEEEcCCCcccCCCCCc
Confidence 99999999999999885
No 17
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=100.00 E-value=1.2e-46 Score=355.59 Aligned_cols=223 Identities=24% Similarity=0.305 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCC
Q 016390 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (390)
Q Consensus 148 Ie~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GD 227 (390)
|++||+|+++++++++++.+.++||+||.||++.+++.+.++|+.+ .|+.++++|.|...+|+.|++++|++||
T Consensus 1 i~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~G~~~------~~~~~v~~g~~~~~~H~~~~~~~l~~Gd 74 (243)
T cd01087 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARL------AYSYIVAAGSNAAILHYVHNDQPLKDGD 74 (243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCCc------CCCCeEEECCCccccCCCcCCCcCCCCC
Confidence 6899999999999999999999999999999999999999999873 4778999999999999999999999999
Q ss_pred eEEEeeeeeeCcEEeeeeeEEEe-cCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCC---------
Q 016390 228 IVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF--------- 297 (390)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~v-G~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~--------- 297 (390)
+|+||+++.++||++|++|||++ |+++++++++++++.++++++++.+|||++++||++++++++++.|+
T Consensus 75 ~v~vD~g~~~~GY~ad~~Rt~~vgg~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~~~~ 154 (243)
T cd01087 75 LVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDV 154 (243)
T ss_pred EEEEEeCceECCEeeeeeEEEEeCCcCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCcccCch
Confidence 99999999999999999999999 69999999999999999999999999999999999999999987632
Q ss_pred ----------ceeccceeeecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeE
Q 016390 298 ----------SVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSA 367 (390)
Q Consensus 298 ----------~~~~~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~ 367 (390)
....|.+|||||+.+||.|.+. ...+++.+|++||||+|||+++.+...... ++.| +.+++
T Consensus 155 ~~~~~~~~~~~~~~h~~GhgiGl~~~e~p~~~--~~~~~~~~l~~GMv~~iEp~iy~~~~~~~~-~~~~------~~~g~ 225 (243)
T cd01087 155 DEIVESGAYAKFFPHGLGHYLGLDVHDVGGYL--RYLRRARPLEPGMVITIEPGIYFIPDLLDV-PEYF------RGGGI 225 (243)
T ss_pred HhhhhhhhhhhhcCCCCccccCcccccCcccc--ccCCCCCCCCCCCEEEECCEEEeCCccccc-cccc------ceeEE
Confidence 2445669999999999999772 113567899999999999999874321111 2222 56799
Q ss_pred EEEEEEEEeCCceeeccC
Q 016390 368 QFEHTLLVSAHTYYIFVH 385 (390)
Q Consensus 368 ~~EdtvlVTe~G~EvLT~ 385 (390)
|+|||||||++|+|+||+
T Consensus 226 ~ied~v~Vt~~G~e~Lt~ 243 (243)
T cd01087 226 RIEDDVLVTEDGPENLTR 243 (243)
T ss_pred EeeeEEEEcCCcceeCcC
Confidence 999999999999999995
No 18
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=100.00 E-value=5.9e-47 Score=381.35 Aligned_cols=229 Identities=18% Similarity=0.220 Sum_probs=200.2
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHc-CCCCCCCCCCcCCceeeeCCCCcc
Q 016390 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA-GGYPSPLNYHFFPKSCCTSVNEVI 213 (390)
Q Consensus 135 ~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~-g~~ps~l~~~~fp~~v~~g~n~~~ 213 (390)
.+.++|+|||++||+.||+|++|++++++.+.+.++||+||.||.+.+.+..... ..+.+ .+..|..++.+|.|...
T Consensus 151 ~~~~lR~iKs~~EI~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~~~~~g~--~~~~~~~iv~sG~~~a~ 228 (391)
T TIGR02993 151 LVNWQRAVKSETEISYMRVAARIVEKMHQRIFERIEPGMRKCDLVADIYDAGIRGVDGFGG--DYPAIVPLLPSGADASA 228 (391)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhhcccCcCC--CcCCcccccccCccccC
Confidence 4577899999999999999999999999999999999999999999887654321 10100 12235557789999999
Q ss_pred ccCCCCCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHH
Q 016390 214 CHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT 293 (390)
Q Consensus 214 ~Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~ 293 (390)
+|+.|++++|++||+|+||+++.|+||++|++|||++|+++++++++|+++.++++++++++|||++++||+++++++++
T Consensus 229 pH~~~~~~~l~~gd~v~iD~g~~~~GY~sD~tRT~~vG~p~~~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~~~~~~~ 308 (391)
T TIGR02993 229 PHLTWDDSPMKVGEGTFFEIAGCYKRYHCPLSRTVFLGKPTQAFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAFFAVLK 308 (391)
T ss_pred CCCCCCCCcccCCCEEEEEeeeecccCccceeEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeccceeeecCCccccC-----CCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEE
Q 016390 294 MSGFSVVKSYCGHGIGELFHCA-----PNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQ 368 (390)
Q Consensus 294 ~~G~~~~~~~~GHgIG~~~he~-----P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~ 368 (390)
++|+.. .|++|||||+.+|+. |.+. .++..+|++||||||||++|.+ | .|++
T Consensus 309 ~~G~~~-~h~~GhgiGl~~~~~~~e~~~~l~----~~~~~~L~~GMv~tvEpgiy~~-----------------~-~Gvr 365 (391)
T TIGR02993 309 KYGIHK-DSRTGYPIGLSYPPDWGERTMSLR----PGDNTVLKPGMTFHFMTGLWME-----------------D-WGLE 365 (391)
T ss_pred HcCCcc-CCCceeeeccCcCCCCCCcccccc----CCCCceecCCCEEEEcceeEeC-----------------C-CCeE
Confidence 999976 467999999998742 3443 4567899999999999998862 3 3689
Q ss_pred EEEEEEEeCCceeeccCCcc
Q 016390 369 FEHTLLVSAHTYYIFVHVFY 388 (390)
Q Consensus 369 ~EdtvlVTe~G~EvLT~~p~ 388 (390)
+||||+||++|+|+||..|.
T Consensus 366 ied~v~VT~~G~e~Lt~~p~ 385 (391)
T TIGR02993 366 ITESILITETGVECLSSVPR 385 (391)
T ss_pred EeeEEEECCCcceecccCCc
Confidence 99999999999999999885
No 19
>PRK14576 putative endopeptidase; Provisional
Probab=100.00 E-value=3.9e-46 Score=376.80 Aligned_cols=227 Identities=22% Similarity=0.317 Sum_probs=206.5
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccc
Q 016390 135 DLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVIC 214 (390)
Q Consensus 135 ~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~ 214 (390)
.+.++|+|||++||+.||+|++++++++..+.+.++||+||.||.+.++..+.+.|... +..| .++++|.| ..+
T Consensus 170 ~l~~lR~iKs~~EI~~~r~A~~i~~~~~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~----~~~~-~~v~~G~~-~~~ 243 (405)
T PRK14576 170 LFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETN----FSRF-NLISVGDN-FSP 243 (405)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCc----CCCC-CEEEECCc-ccC
Confidence 35678999999999999999999999999999999999999999999999999887531 1123 47888887 568
Q ss_pred cCCCCCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHH
Q 016390 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (390)
Q Consensus 215 Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~ 294 (390)
|+.|++++|++||+|++|+++.++||++|++|||++|+++++++++|+++.++++++++++|||++++||++++++++++
T Consensus 244 h~~~~~~~l~~Gd~v~~d~g~~~~GY~sd~tRT~~~G~p~~~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~~ 323 (405)
T PRK14576 244 KIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKT 323 (405)
T ss_pred CCCCCCcccCCCCEEEEEeceeECCEEeeeeEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc-eeccceeeecC--CccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEE
Q 016390 295 SGFS-VVKSYCGHGIG--ELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEH 371 (390)
Q Consensus 295 ~G~~-~~~~~~GHgIG--~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~Ed 371 (390)
.||. ..++++||||| +.+||.|.+. .+++.+|++||||+|||.++. .|.+++++||
T Consensus 324 ~G~~~~~~~~~GHgiG~~l~~~e~P~i~----~~~~~~Le~GMv~~vEp~~y~-----------------~g~ggvriED 382 (405)
T PRK14576 324 SGLPHYNRGHLGHGDGVFLGLEEVPFVS----TQATETFCPGMVLSLETPYYG-----------------IGVGSIMLED 382 (405)
T ss_pred cCCccccCCCCCCCCCCCCCcCcCCCcC----CCCCCccCCCCEEEECCceee-----------------cCCCEEEEee
Confidence 9997 45678999999 7889999875 356789999999999998775 3678999999
Q ss_pred EEEEeCCceeeccCCcc
Q 016390 372 TLLVSAHTYYIFVHVFY 388 (390)
Q Consensus 372 tvlVTe~G~EvLT~~p~ 388 (390)
||+||++|+|+||..|.
T Consensus 383 tvlVTe~G~e~LT~~p~ 399 (405)
T PRK14576 383 MILITDSGFEFLSKLDR 399 (405)
T ss_pred EEEECCCccccCCCCCc
Confidence 99999999999999885
No 20
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=100.00 E-value=2.6e-44 Score=360.00 Aligned_cols=248 Identities=19% Similarity=0.256 Sum_probs=217.1
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCC----CCcCCceeeeCCCCcccc
Q 016390 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLN----YHFFPKSCCTSVNEVICH 215 (390)
Q Consensus 140 r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~----~~~fp~~v~~g~n~~~~H 215 (390)
-.+|+++||+.||+|++|++++|+.+.+.++||+|+.||++.+++.+.++++. .+.+ +.+|+..+|+|+|+.++|
T Consensus 11 ~~i~~~~eI~~~r~Aa~Ia~~~l~~~~~~ikpG~t~~el~~~~~~~i~~~~a~-~~~~~~~~~~g~afpt~vSvN~~v~H 89 (389)
T TIGR00495 11 YSLSNPEVVTKYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAK-IFKKEKEMEKGIAFPTCISVNNCVGH 89 (389)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhh-hhcccccccCCCCCCeEEecCCeeeC
Confidence 36899999999999999999999999999999999999999999999887653 2211 334444466789999999
Q ss_pred CCC--C--CCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecC-----CCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHH
Q 016390 216 GIP--D--SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-----ADEASRQLVQCTYECLEKAISIVKPGVRFREIGE 286 (390)
Q Consensus 216 g~p--~--~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~-----~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~ 286 (390)
++| + ++.|++||+|+||+|+.++||++|++|||+||+ ++++++++++++++|++++|+.+|||++++||++
T Consensus 90 ~~P~~~d~~~~Lk~GDvVkIDlG~~idGY~aD~arTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~~~dI~~ 169 (389)
T TIGR00495 90 FSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTE 169 (389)
T ss_pred CCCCCCCCCcCcCCCCEEEEEEEEEECCEEEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 999 2 489999999999999999999999999999995 5788999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeccceeeecCCcccc-CCCC-CCCCC----CCCcccccCCcEEEEccccccCCccccccCCCce---
Q 016390 287 VINRHATMSGFSVVKSYCGHGIGELFHC-APNI-PHYSR----NKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWT--- 357 (390)
Q Consensus 287 ~i~~~~~~~G~~~~~~~~GHgIG~~~he-~P~i-~~~~~----~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt--- 357 (390)
+++++++++||.++++++|||||..+|+ .|.| +++.. ......|++||||+||||++.|......++|.||
T Consensus 170 ai~~v~~~~G~~~v~~~~gH~igr~~~~g~~~Ii~~~~~~~~~~~~~~~le~gev~aIEp~vs~G~g~v~~~~~~~tiy~ 249 (389)
T TIGR00495 170 AINKVAHSYGCTPVEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVSTGEGKAKDADQRTTIYK 249 (389)
T ss_pred HHHHHHHHcCCeecCCceeecccceeccCCCeeeecCCccccCCCCCCEecCCCEEEEeeeecCCCceEEECCCeeEEEE
Confidence 9999999999999999999999999998 7885 55431 1245799999999999999999887776766666
Q ss_pred -----------------------------------------------------------EEeeCCeeeEEEEEEEEEeCC
Q 016390 358 -----------------------------------------------------------AVTADGKRSAQFEHTLLVSAH 378 (390)
Q Consensus 358 -----------------------------------------------------------~~t~~g~~~~~~EdtvlVTe~ 378 (390)
+..++|...+|||+||+|+++
T Consensus 250 ~~~~~~y~lk~~~sr~~l~ei~~~f~~~PF~~R~l~~~~~~~~gl~e~~~~~~l~~ypvl~e~~g~~Vaqf~~Tv~v~~~ 329 (389)
T TIGR00495 250 RDPSKTYGLKMKASRAFFSEIERRFDAMPFTLRNFEDEKRARMGLVECVKHELLQPYPVLYEKEGEFVAQFKFTVLLMPN 329 (389)
T ss_pred ECCCCCcCCCCHHHHHHHHHHHHhCCCCCcchHHhcchhhHHHHHHHHHHCCCcccCCceEeeCCCeEEEEEEEEEECCC
Confidence 245678899999999999999
Q ss_pred ceeeccCCcc
Q 016390 379 TYYIFVHVFY 388 (390)
Q Consensus 379 G~EvLT~~p~ 388 (390)
|+++||..|+
T Consensus 330 g~~~~t~~~~ 339 (389)
T TIGR00495 330 GPMRITSGEF 339 (389)
T ss_pred CcEEeCCCCC
Confidence 9999999753
No 21
>PRK13607 proline dipeptidase; Provisional
Probab=100.00 E-value=6.8e-44 Score=363.18 Aligned_cols=246 Identities=17% Similarity=0.164 Sum_probs=198.6
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCcccc
Q 016390 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (390)
Q Consensus 136 ~~~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H 215 (390)
+..+|+|||++||+.||+|++++.++++.+++.++||+||.||++.+.... ..++ . ...|+.+|++|.|..++|
T Consensus 155 l~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~i~pG~tE~ei~~~~~~~~-~~~~--~---~~~y~~iva~G~naa~~H 228 (443)
T PRK13607 155 LHYHRAYKTDYELACMREAQKIAVAGHRAAKEAFRAGMSEFDINLAYLTAT-GQRD--N---DVPYGNIVALNEHAAVLH 228 (443)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh-CCCC--c---CCCCCcEEEecCcceEec
Confidence 356899999999999999999999999999999999999999998654332 2222 1 236888999999999999
Q ss_pred CCCCCC-cCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHH--
Q 016390 216 GIPDSR-KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA-- 292 (390)
Q Consensus 216 g~p~~r-~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~-- 292 (390)
+.|+++ ++++||+|+||+|+.++||++|++|||+ |+++++++++|+++.+|++++++.+|||++++||+.++.+++
T Consensus 229 ~~~~~~~~~~~Gd~vliD~Ga~~~GY~sDiTRTf~-g~~~~~~~~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~ 307 (443)
T PRK13607 229 YTKLDHQAPAEMRSFLIDAGAEYNGYAADITRTYA-AKEDNDFAALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAK 307 (443)
T ss_pred CCccCCCCCCCCCEEEEEeeEEECCEEecceEEEe-cCCCHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 999884 6899999999999999999999999999 888999999999999999999999999999999999987665
Q ss_pred --HHcCCc----------------eeccceeeecCCccccCCCCCCC------------CCCCCcccccCCcEEEEcccc
Q 016390 293 --TMSGFS----------------VVKSYCGHGIGELFHCAPNIPHY------------SRNKAVGVMKVGQTFTIEPMI 342 (390)
Q Consensus 293 --~~~G~~----------------~~~~~~GHgIG~~~he~P~i~~~------------~~~~~~~~l~~GmvftIEP~i 342 (390)
.+.|+. ...|.+||+||+.+||.+.+..+ .......+|+|||||||||+|
T Consensus 308 ~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iGldvHd~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~GmV~TvEPGi 387 (443)
T PRK13607 308 LLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAGFMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLTIEPGL 387 (443)
T ss_pred HHHHcCCCCCCCHHHHHhCCCceEecCCCccCccCcccccCCCcccccccccccccccccccccCCcCCCCcEEEECCee
Confidence 444443 34577999999999998654211 001245799999999999999
Q ss_pred ccCCccccccCC-------CceEE-eeCCeeeEEEEEEEEEeCCceeeccCCcc
Q 016390 343 NAGVWRDRMWPD-------GWTAV-TADGKRSAQFEHTLLVSAHTYYIFVHVFY 388 (390)
Q Consensus 343 ~~g~~~~~~~~d-------~wt~~-t~~g~~~~~~EdtvlVTe~G~EvLT~~p~ 388 (390)
|+.......|.. +|..+ .-.+.+|+|+||+||||++|+|+||..-+
T Consensus 388 Y~~~~ll~~~~~~~~~~~in~~~i~~~~~~GGvRIED~vlVT~~G~e~Lt~~~~ 441 (443)
T PRK13607 388 YFIDSLLAPLREGPFSKHFNWQKIDALKPFGGIRIEDNVVVHENGVENMTRDLK 441 (443)
T ss_pred eeChhhhchhhhhhhhhhccHHHHHhhcCCCEEeecceEEEcCCCCeECChhhc
Confidence 984321111111 23221 11356799999999999999999997543
No 22
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=100.00 E-value=2.3e-43 Score=324.36 Aligned_cols=207 Identities=30% Similarity=0.485 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCC
Q 016390 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (390)
Q Consensus 148 Ie~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GD 227 (390)
|++||+|++++++++.++.+.++||+||.||.+.+++.+.++|+++ .+||+++++|.|...+|+.|++++|++||
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~-----~~~~~~v~~g~~~~~~h~~~~~~~l~~gd 75 (208)
T cd01092 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEG-----PSFDTIVASGPNSALPHGVPSDRKIEEGD 75 (208)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC-----CCCCcEEEECccccccCCCCCCcCcCCCC
Confidence 6899999999999999999999999999999999999999999864 26899999999999999999999999999
Q ss_pred eEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCce-eccceee
Q 016390 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV-VKSYCGH 306 (390)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~-~~~~~GH 306 (390)
+|+||+++.++||++|++|||++|+++++++++++++.++++++++.+|||++++||+++++++++++|+.. ..+.+||
T Consensus 76 ~v~id~g~~~~gy~~d~~RT~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~g~~~~~~~~~Gh 155 (208)
T cd01092 76 LVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEYFIHRTGH 155 (208)
T ss_pred EEEEEeeeeECCEeccceeEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCccccCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999863 4566999
Q ss_pred ecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeCCce
Q 016390 307 GIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAHTY 380 (390)
Q Consensus 307 gIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe~G~ 380 (390)
|||+.+||.|.+. .+++.+|++||||+|||+++. ++.+++++||||+||++|+
T Consensus 156 ~iG~~~~e~p~i~----~~~~~~l~~gmv~~iep~~~~-----------------~~~~g~~~ed~v~vt~~g~ 208 (208)
T cd01092 156 GVGLEVHEAPYIS----PGSDDVLEEGMVFTIEPGIYI-----------------PGKGGVRIEDDVLVTEDGC 208 (208)
T ss_pred ccCcccCcCCCcC----CCCCCCcCCCCEEEECCeEEe-----------------cCCCEEEeeeEEEECCCCC
Confidence 9999999999875 356789999999999998875 3567899999999999995
No 23
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=100.00 E-value=7.5e-42 Score=319.47 Aligned_cols=209 Identities=18% Similarity=0.190 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCC---CCcC
Q 016390 149 ERMRETCRIAREVLDAAARMIRPG--VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SRKL 223 (390)
Q Consensus 149 e~mR~A~~ia~~~l~~a~~~i~pG--vTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~---~r~L 223 (390)
+.||.+..+ .++++.+.+.++|| +||.||++.+++.+...|.++. .+||.+||+|.|+.++|+.|+ +++|
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~i~~G~~~tE~eiaa~~~~~~~~~g~~~~----~~f~~~v~~g~n~~~~H~~p~~~~~r~l 79 (224)
T cd01085 5 AHIRDGVAL-VEFLAWLEQEVPKGETITELSAADKLEEFRRQQKGYVG----LSFDTISGFGPNGAIVHYSPTEESNRKI 79 (224)
T ss_pred HHHHHHHHH-HHHHHHHHHHhccCCCEeHHHHHHHHHHHHHHcCCCcC----CCcceEEEecCccCcCCCCcCcccCccc
Confidence 356666666 59999999999999 9999999999988877765532 368999999999999999999 9999
Q ss_pred CCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhc-CCCCcHhHHHHHHHHHHHHcCCceecc
Q 016390 224 EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIV-KPGVRFREIGEVINRHATMSGFSVVKS 302 (390)
Q Consensus 224 ~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~-kPG~~~~eI~~~i~~~~~~~G~~~~~~ 302 (390)
++||+|+||+++.++||++|++|||++|+++++++++++++++++.++++.+ +||++.++|.+++++++.+.|+.+ .+
T Consensus 80 ~~GD~V~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~g~~~-~h 158 (224)
T cd01085 80 SPDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDY-GH 158 (224)
T ss_pred CCCCEEEEEeCccCCCcccccEEeecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCC-CC
Confidence 9999999999999999999999999999999999999999999999999988 499999999999999999999874 45
Q ss_pred ceeeecC--CccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeCCce
Q 016390 303 YCGHGIG--ELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAHTY 380 (390)
Q Consensus 303 ~~GHgIG--~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe~G~ 380 (390)
++||||| +.+||.|.++ +. .++..+|++||||+|||+++. +|..++++||||+||++|+
T Consensus 159 ~~GHgIG~~l~~hE~P~i~-~~-~~~~~~L~~GmvftiEP~iy~-----------------~g~~gvried~v~Vt~~G~ 219 (224)
T cd01085 159 GTGHGVGSFLNVHEGPQSI-SP-APNNVPLKAGMILSNEPGYYK-----------------EGKYGIRIENLVLVVEAET 219 (224)
T ss_pred CCCCCCCCCCcCCCCCCcC-Cc-CCCCCCcCCCCEEEECCEeEe-----------------CCCeEEEeeEEEEEeeCCc
Confidence 6999999 5889999885 21 346689999999999999986 3677899999999999998
Q ss_pred ee
Q 016390 381 YI 382 (390)
Q Consensus 381 Ev 382 (390)
.-
T Consensus 220 ~~ 221 (224)
T cd01085 220 TE 221 (224)
T ss_pred CC
Confidence 53
No 24
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=100.00 E-value=2.7e-41 Score=311.03 Aligned_cols=204 Identities=34% Similarity=0.507 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH-HHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCC
Q 016390 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEA-TITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (390)
Q Consensus 149 e~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~-~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GD 227 (390)
|+||+|++|++++++++++.++||+||.||.+.+.++ +.++|... .+|+.++++|.|...+|+.|++++|++||
T Consensus 1 e~~R~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~~g~~~-----~~~~~~~~~g~~~~~~~~~~~~~~l~~gd 75 (207)
T PF00557_consen 1 ECMRKAARIADAAMEAAMEALRPGMTEYEIAAAIERAMLRRHGGEE-----PAFPPIVGSGPNTDLPHYTPTDRRLQEGD 75 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCBHHHHHHHHHHHHHHHTTTTE-----ESSESEEEECCCCGETTTBCCSSBESTTE
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHcCCCc-----ccCCceEecCCcceecceeccceeeecCC
Confidence 6899999999999999999999999999999999998 56667432 36888999999999999999999999999
Q ss_pred eEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCC-ceeccceee
Q 016390 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVKSYCGH 306 (390)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~-~~~~~~~GH 306 (390)
+|+||+++.++||++|++||+++| ++++++++++.++++++.+++.+|||++++||++++.++++++|| ....+.+||
T Consensus 76 ~v~id~~~~~~gy~~d~~Rt~~~G-~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~g~~~~~~~~~GH 154 (207)
T PF00557_consen 76 IVIIDFGPRYDGYHADIARTFVVG-PTPEQRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEEYGLEEPYPHGLGH 154 (207)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESS-SHHHHHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHHTTEGEEBTSSSEE
T ss_pred cceeeccceeeeeEeeeeeEEEEe-ecccccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHhhcccceeeecccc
Confidence 999999999999999999999999 999999999999999999999999999999999999999999999 566778999
Q ss_pred ecCCccccC-CCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeC
Q 016390 307 GIGELFHCA-PNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSA 377 (390)
Q Consensus 307 gIG~~~he~-P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe 377 (390)
|||+.+|+. |++.. .+++.+|++||||+|||+++.. ++.+++++||||+|||
T Consensus 155 ~iG~~~~~~~P~i~~---~~~~~~l~~gmv~~iep~~~~~----------------~~~~g~~~ed~v~Vte 207 (207)
T PF00557_consen 155 GIGLEFHEPGPNIAR---PGDDTVLEPGMVFAIEPGLYFI----------------PGWGGVRFEDTVLVTE 207 (207)
T ss_dssp EESSSSSEEEEEESS---TTTSSB--TTBEEEEEEEEEEE----------------TTSEEEEEBEEEEEES
T ss_pred cccccccccceeeec---ccccceecCCCceeEeeeEEcc----------------CCCcEEEEEEEEEECc
Confidence 999999997 98863 3577899999999999987741 3556999999999997
No 25
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=100.00 E-value=6.1e-41 Score=338.48 Aligned_cols=238 Identities=22% Similarity=0.290 Sum_probs=204.8
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHc----CCCCCCCCCCcCCceeeeCCCCcccc
Q 016390 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA----GGYPSPLNYHFFPKSCCTSVNEVICH 215 (390)
Q Consensus 140 r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~----g~~ps~l~~~~fp~~v~~g~n~~~~H 215 (390)
+..+|++||+.||+|++|++++++.+.+.|+||+|+.||+..++..+.+. |+.. ..+||+ ++|.|++.+|
T Consensus 150 ~~~~s~~EI~~~R~AaeIa~~vl~~~~~~IkpG~se~EIa~~ie~~ir~~~~~~G~~~----g~aFPt--~vS~N~~aaH 223 (470)
T PTZ00053 150 LEKLSEEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADGLKC----GWAFPT--GCSLNHCAAH 223 (470)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcCCcc----cCCCCc--eeecCccccC
Confidence 45589999999999999999999999999999999999999888866543 5432 247987 4589999999
Q ss_pred CCCC---CCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHH
Q 016390 216 GIPD---SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292 (390)
Q Consensus 216 g~p~---~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~ 292 (390)
++|+ +++|++||+|.||+|+.++||++|++|||++| ++++++++++.+|++++|+.++||++++||+++|++++
T Consensus 224 ~tP~~gd~~vLk~GDvVkID~G~~vdGYiaD~ArTv~vg---~~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AIqevi 300 (470)
T PTZ00053 224 YTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFN---PKYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVI 300 (470)
T ss_pred CCCCCCCCcEecCCCeEEEEEeEEECCEEEeEEEEEEeC---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9996 68999999999999999999999999999997 68999999999999999999999999999999999999
Q ss_pred HHcCCc---------eeccceeeecCC-ccccCCCCCCCCCCCCcccccCCcEEEEccccccCCcccc------------
Q 016390 293 TMSGFS---------VVKSYCGHGIGE-LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDR------------ 350 (390)
Q Consensus 293 ~~~G~~---------~~~~~~GHgIG~-~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~------------ 350 (390)
+++||. .+++++|||||+ .+|+.|.+|.+. .....+|++||||+|||+++.|.....
T Consensus 301 es~G~e~~Gk~f~~k~I~nltGHgIG~y~iHe~k~iP~v~-~~~~~~LeeGmVfaIEPf~stG~G~v~~~~~~siY~~~~ 379 (470)
T PTZ00053 301 ESYEVEIKGKTYPIKSIRNLNGHSIGPYIIHGGKSVPIVK-GGENTRMEEGELFAIETFASTGRGYVNEDLECSHYMKDP 379 (470)
T ss_pred HHcCCcccCcccccccccCCcccCCCCccccCCCcCCeeC-CCCCCEecCCCEEEEcceeeCCCCeEecCCCceeeeEcC
Confidence 999974 468899999997 899988888764 456789999999999999998765211
Q ss_pred ------------------------------ccCCCce----------------------EEeeCCeeeEEEEEEEEEeCC
Q 016390 351 ------------------------------MWPDGWT----------------------AVTADGKRSAQFEHTLLVSAH 378 (390)
Q Consensus 351 ------------------------------~~~d~wt----------------------~~t~~g~~~~~~EdtvlVTe~ 378 (390)
.|-++-+ ++..+|.+.+||||||||+++
T Consensus 380 ~~~~~~lk~~~ar~ll~~I~~~f~tlPF~~R~l~~~~~~~~~~gl~~lv~~giv~~Yp~L~e~~G~~VAQfehTvll~p~ 459 (470)
T PTZ00053 380 GAEFVPLRLPKAKQLLKHINTNFGTLAFCRRWLDRLGQDRHLLALKQLVDAGIVNPYPPLCDVRGSYTSQMEHTILLRPT 459 (470)
T ss_pred cCCcCCCCCHHHHHHHHHHHHHCCCCCcchhhhhccchhHHHHHHHHHHHCCCcccCCccCccCCCEEeEEEEEEEECCC
Confidence 1111110 245678899999999999999
Q ss_pred ceeeccCCc
Q 016390 379 TYYIFVHVF 387 (390)
Q Consensus 379 G~EvLT~~p 387 (390)
|.|+||+..
T Consensus 460 ~~~vis~g~ 468 (470)
T PTZ00053 460 CKEVLSRGD 468 (470)
T ss_pred CCEecCCCC
Confidence 999999763
No 26
>PRK08671 methionine aminopeptidase; Provisional
Probab=100.00 E-value=9.4e-41 Score=323.63 Aligned_cols=227 Identities=30% Similarity=0.501 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCC---CCcC
Q 016390 147 QIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SRKL 223 (390)
Q Consensus 147 EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~---~r~L 223 (390)
+|+.||+|++|++++++.+.+.++||+|+.||++.+++.+.++|+.++ ||..+ +.|+..+|+.|. +++|
T Consensus 1 ~i~~~r~A~~I~~~~~~~~~~~i~pG~se~ei~~~~~~~i~~~g~~~a------fp~~v--s~n~~~~H~~p~~~d~~~l 72 (291)
T PRK08671 1 ELEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FPCNI--SINEVAAHYTPSPGDERVF 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCccC------CCCEE--eeCCCccCCCCCCCCCccc
Confidence 589999999999999999999999999999999999999999998764 78555 568888999986 6899
Q ss_pred CCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCceeccc
Q 016390 224 EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY 303 (390)
Q Consensus 224 ~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~~~~ 303 (390)
++||+|+||+|+.++||++|++||+++| ++++++++++.+|++++++.+|||++++||+++++++++++||..+.++
T Consensus 73 ~~GDvV~iD~G~~~dGY~aD~arT~~vG---~~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~~G~~~~~~~ 149 (291)
T PRK08671 73 PEGDVVKLDLGAHVDGYIADTAVTVDLG---GKYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNL 149 (291)
T ss_pred CCCCEEEEEEeEEECCEEEEEEEEEEeC---hhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccCCC
Confidence 9999999999999999999999999998 4788999999999999999999999999999999999999999988889
Q ss_pred eeeecCC-ccccCCCCCCCCCCCCcccccCCcEEEEccccccCCcccc--------------------------------
Q 016390 304 CGHGIGE-LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDR-------------------------------- 350 (390)
Q Consensus 304 ~GHgIG~-~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~-------------------------------- 350 (390)
+|||||+ .+|+.|.+|.+. ..++.+|++||||+|||+++.|.....
T Consensus 150 ~GHgiG~~~~he~p~ip~~~-~~~~~~le~GmV~aIEp~~t~G~G~v~~~~~~~iy~~~~~~~~k~~~~r~~~~~i~~~~ 228 (291)
T PRK08671 150 TGHGLERYELHAGPSIPNYD-EGGGVKLEEGDVYAIEPFATDGEGKVVEGPEVEIYSLLRNRPVRLPAARKLLEEIEEEY 228 (291)
T ss_pred cccCcCCCcccCCCccCccC-CCCCceeCCCCEEEEcceEECCCCeEecCCceEEEeecCCCCCCCHHHHHHHHHHHHHC
Confidence 9999996 799999998754 456789999999999999988754221
Q ss_pred -ccC-------CCce--------------------EEeeCCeeeEEEEEEEEEeCCceeeccC
Q 016390 351 -MWP-------DGWT--------------------AVTADGKRSAQFEHTLLVSAHTYYIFVH 385 (390)
Q Consensus 351 -~~~-------d~wt--------------------~~t~~g~~~~~~EdtvlVTe~G~EvLT~ 385 (390)
++| |... ++.++|...+||||||+||++|++++|.
T Consensus 229 ~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~~yp~l~e~~~~~vaq~~~Tv~v~~~g~~~~t~ 291 (291)
T PRK08671 229 NTLPFAERWLEGLFGEDKLELRRLLKAGALYGYPVLKEVKGGLVSQAEHTVIVTEDGCEVTTK 291 (291)
T ss_pred CCCCcchHHhhccchhhHHHHHHHHHCCCcccCCccEecCCCEEEEEEEEEEECCCCcEEecC
Confidence 112 1111 2457788999999999999999999985
No 27
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=100.00 E-value=5.6e-41 Score=314.44 Aligned_cols=214 Identities=24% Similarity=0.384 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCC--CCC-CCCC--CcCCceeeeCCCCccccCCC----
Q 016390 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGG--YPS-PLNY--HFFPKSCCTSVNEVICHGIP---- 218 (390)
Q Consensus 148 Ie~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~--~ps-~l~~--~~fp~~v~~g~n~~~~Hg~p---- 218 (390)
+++||+|++|++++++.+.+.++||+||.||+..+++.+.+... ++. ..++ ..||. +++.|+..+|+.|
T Consensus 1 ~~~~r~A~~I~~~~~~~~~~~i~pG~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~~--~v~~n~~~~H~~p~~~~ 78 (228)
T cd01089 1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPT--CISVNNCVCHFSPLKSD 78 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhhcccccCcccccCCCCcCe--EeccCceeecCCCCCCC
Confidence 46899999999999999999999999999998888877777322 322 1222 34554 4457999999996
Q ss_pred CCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCH-----HHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHH
Q 016390 219 DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADE-----ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT 293 (390)
Q Consensus 219 ~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~-----~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~ 293 (390)
++++|++||+|+||+|+.++||++|++|||++|++++ +++++++++.++++++++.+|||++++||+++++++++
T Consensus 79 ~~~~l~~Gd~v~iD~g~~~~GY~sD~tRT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~ 158 (228)
T cd01089 79 ATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIV 158 (228)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEEEEEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999998875 89999999999999999999999999999999999999
Q ss_pred HcCCceeccceeeecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEE
Q 016390 294 MSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTL 373 (390)
Q Consensus 294 ~~G~~~~~~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~Edtv 373 (390)
++||.++..++||++|..+.-.|... +-..+|++||||++||+++. +|.+++++||||
T Consensus 159 ~~G~~~~~~~~~h~~g~~~~~~~~~~-----~~~~~l~~gmvf~~ep~~~~-----------------~g~~~~~~~~Tv 216 (228)
T cd01089 159 DYGCTPVEGVLSHQLKRVVSSGEGKA-----KLVECVKHGLLFPYPVLYEK-----------------EGEVVAQFKLTV 216 (228)
T ss_pred HcCCEEecCccccCcCceEecCCCCc-----cchhhccCCcccccceeEcc-----------------CCCeEEEEEEEE
Confidence 99999999999999998554443221 23578999999999998876 588899999999
Q ss_pred EEeCCceeeccC
Q 016390 374 LVSAHTYYIFVH 385 (390)
Q Consensus 374 lVTe~G~EvLT~ 385 (390)
+||++|+|+||.
T Consensus 217 ~vt~~G~e~lt~ 228 (228)
T cd01089 217 LLTPNGVTVLTG 228 (228)
T ss_pred EEcCCCCeeCCC
Confidence 999999999984
No 28
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=100.00 E-value=6.3e-41 Score=316.74 Aligned_cols=227 Identities=14% Similarity=0.174 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hccCC--CCHHHHHHHHHHHHHHcCCCCCCCC----CCcCCceeeeCCCC-cccc
Q 016390 148 IERMRETCRIAREVLDAAAR-----MIRPG--VTTDEIDRVVHEATITAGGYPSPLN----YHFFPKSCCTSVNE-VICH 215 (390)
Q Consensus 148 Ie~mR~A~~ia~~~l~~a~~-----~i~pG--vTe~ei~~~v~~~~~~~g~~ps~l~----~~~fp~~v~~g~n~-~~~H 215 (390)
|+.||+|++++..+|...+. .|.+| +|+.+|+..++..+.+.+.....++ -..||++|++|.|. ...|
T Consensus 1 ~~~~~~a~~~~~~~~~~~~~~~~~~~id~~~~~t~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~y~~iv~sG~~~~~l~h 80 (243)
T cd01091 1 LNNIKKASDATVDVLKKFFVDEVEEIIDQEKKVTHSKLSDKVEKAIEDKKKYKAKLDPEQLDWCYPPIIQSGGNYDLLKS 80 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhCchhhhcCCCHHHcCcccCCeEeECcCcccCCC
Confidence 46899999999999976555 89999 9999999999999998875421111 25799999999998 8999
Q ss_pred CCCCCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHc
Q 016390 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS 295 (390)
Q Consensus 216 g~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~ 295 (390)
+.++++.++.|++|++|+|++|+|||+|++|||++| ++++++++|++++++++++|+.+|||++++||++++.+++++.
T Consensus 81 ~~~s~~~~~~~~~vl~d~G~~y~gY~sditRT~~v~-p~~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~~ 159 (243)
T cd01091 81 SSSSDKLLYHFGVIICSLGARYKSYCSNIARTFLID-PTSEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKK 159 (243)
T ss_pred CCCCccccCCCCEEEEEeCcccCCEeecceEEEEcC-CCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999997 7999999999999999999999999999999999999999998
Q ss_pred CCcee---ccceeeecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEE
Q 016390 296 GFSVV---KSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHT 372 (390)
Q Consensus 296 G~~~~---~~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~Edt 372 (390)
|.... .+.+|||||+.+||.|.+.. .++..+|++||||+|||+++.-.. ...+++ .++.+++++|||
T Consensus 160 ~~~~~~~~~~~~GHgiGle~hE~~~~l~---~~~~~~L~~GMvf~vepGi~~~~~-~~~~~~------~~~~~gv~ieDt 229 (243)
T cd01091 160 KPELEPNFTKNLGFGIGLEFRESSLIIN---AKNDRKLKKGMVFNLSIGFSNLQN-PEPKDK------ESKTYALLLSDT 229 (243)
T ss_pred ChhHHHhCcCCcccccCcccccCccccC---CCCCCCcCCCCEEEEeCCcccccC-ccccCc------cCCeeEEEEEEE
Confidence 75533 34599999999999886532 356789999999999999973110 001111 236789999999
Q ss_pred EEEeCCce-eeccC
Q 016390 373 LLVSAHTY-YIFVH 385 (390)
Q Consensus 373 vlVTe~G~-EvLT~ 385 (390)
|+||++|+ |+||.
T Consensus 230 V~Vt~~G~~~~LT~ 243 (243)
T cd01091 230 ILVTEDEPAIVLTN 243 (243)
T ss_pred EEEcCCCCceecCC
Confidence 99999999 99985
No 29
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=100.00 E-value=6e-40 Score=318.39 Aligned_cols=229 Identities=28% Similarity=0.410 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCC---CC
Q 016390 145 PDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SR 221 (390)
Q Consensus 145 ~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~---~r 221 (390)
-+||+.||+|++|++++++.+.+.++||+|+.||++.+++.+.++|+.+ +||.++ +.|+..+|+.|. ++
T Consensus 2 ~~~i~~~r~A~~I~~~~~~~~~~~i~~G~se~el~~~~e~~~~~~g~~~------aFp~~v--s~n~~~~H~~p~~~d~~ 73 (295)
T TIGR00501 2 IERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEP------AFPCNI--SINECAAHFTPKAGDKT 73 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC------CCCcce--ecCCEeeCCCCCCCcCc
Confidence 4799999999999999999999999999999999999999999999885 588765 579999999995 67
Q ss_pred cCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCceec
Q 016390 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVK 301 (390)
Q Consensus 222 ~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~~ 301 (390)
.|++||+|+||+|+.++||++|++|||++|+ .++++++++.+|++++++.+|||++++||+++++++++++||..+.
T Consensus 74 ~l~~GDvV~iD~G~~~dGY~aD~arT~~vG~---~~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi~~~G~~~i~ 150 (295)
T TIGR00501 74 VFKDGDVVKLDLGAHVDGYIADTAITVDLGD---QYDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPIS 150 (295)
T ss_pred cCCCCCEEEEEEeEEECCEEEEEEEEEEeCc---HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeeec
Confidence 8999999999999999999999999999985 3789999999999999999999999999999999999999999888
Q ss_pred cceeeecC-CccccCCCCCCCCCCCCcccccCCcEEEEccccccCCcccc------------------------------
Q 016390 302 SYCGHGIG-ELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDR------------------------------ 350 (390)
Q Consensus 302 ~~~GHgIG-~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~------------------------------ 350 (390)
+++||||| +..|+.+.+|.+. .+...+|++||||+|||+++.|.....
T Consensus 151 ~~~GHgig~~~~h~g~~ip~i~-~~~~~~le~GmV~aIEP~~~~G~G~v~~~~~~~iy~~~~~~~~k~~~~r~~l~~i~~ 229 (295)
T TIGR00501 151 NLTGHSMAPYRLHGGKSIPNVK-ERDTTKLEEGDVVAIEPFATDGVGYVTDGGEVSIYAFLAERPVRLDSARNLLKTIDE 229 (295)
T ss_pred CCCCcceecccccCCCccCeec-CCCCCEeCCCCEEEEceeEECCcCeEecCCCeEEEeECCCCCCCCHHHHHHHHHHHH
Confidence 99999999 4789887777553 345789999999999999887654211
Q ss_pred ---ccC------CC-----ce-----------------EEeeCCeeeEEEEEEEEEeCCceeeccC
Q 016390 351 ---MWP------DG-----WT-----------------AVTADGKRSAQFEHTLLVSAHTYYIFVH 385 (390)
Q Consensus 351 ---~~~------d~-----wt-----------------~~t~~g~~~~~~EdtvlVTe~G~EvLT~ 385 (390)
++| ++ +. +..++|...+||||||+|+++|++++|.
T Consensus 230 ~~~~~pF~~r~l~~~~~~~~~~~l~~~~~~~~~~~yp~l~e~~g~~vaq~~~Tv~v~~~g~~~~t~ 295 (295)
T TIGR00501 230 NYGTLPFARRWLDKLGDEKYLFALNNLIRHGLIYDYPVLNEISGGYVAQWEHTILVEEHGKEVTTK 295 (295)
T ss_pred HCCCCCcchhHhcccchhHHHHHHHHHHHCCCccCCCccEeeCCCEEEEEEEEEEECCCccEEcCC
Confidence 112 11 00 2457888999999999999999999985
No 30
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00 E-value=7e-40 Score=317.56 Aligned_cols=226 Identities=30% Similarity=0.426 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCC---CcCC
Q 016390 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDS---RKLE 224 (390)
Q Consensus 148 Ie~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~---r~L~ 224 (390)
++.||+|++|++++++++.+.++||+||.||++.+++.+.++|+.+ +||. ++|.|+..+|+.|+. ++|+
T Consensus 1 ~~~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G~~~------afp~--~is~n~~~~H~~p~~~d~~~l~ 72 (291)
T cd01088 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGP------AFPV--NLSINECAAHYTPNAGDDTVLK 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCCC------CCCc--eeccCCEeeCCCCCCCCCcccC
Confidence 3689999999999999999999999999999999999999999765 4774 468999999999964 8999
Q ss_pred CCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCceeccce
Q 016390 225 DGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYC 304 (390)
Q Consensus 225 ~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~~~~~ 304 (390)
+||+|+||+|+.++||++|++|||++|+ +++++++++++|++++|+.+|||++++||+++++++++++||..+.+++
T Consensus 73 ~GDvV~iD~G~~~dGY~sD~arT~~vg~---~~~~l~ea~~~A~~~ai~~ikPG~~~~dV~~ai~~~i~~~G~~~~~~~~ 149 (291)
T cd01088 73 EGDVVKLDFGAHVDGYIADSAFTVDFDP---KYDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLT 149 (291)
T ss_pred CCCEEEEEEEEEECCEEEEEEEEEecCh---hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCEEeecCC
Confidence 9999999999999999999999999985 7889999999999999999999999999999999999999999888999
Q ss_pred eeecCC-ccccCCCCCCCCCCCCcccccCCcEEEEccccccCCcccc---------------------------------
Q 016390 305 GHGIGE-LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDR--------------------------------- 350 (390)
Q Consensus 305 GHgIG~-~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~--------------------------------- 350 (390)
|||||+ .+|+.|.+|.+.. ....+|++||||+|||+++.|.....
T Consensus 150 GHgig~~~~h~~~~ip~~~~-~~~~~le~gmV~aIEp~~s~G~G~v~~~~~~~iy~~~~~~~~~~~~~r~~~~~i~~~~~ 228 (291)
T cd01088 150 GHSIERYRLHAGKSIPNVKG-GEGTRLEEGDVYAIEPFATTGKGYVHDGPECSIYMLNRDKPLRLPRARKLLDVIYENFG 228 (291)
T ss_pred ccCccCccccCCCccCccCC-CCCCEeCCCCEEEEceeEECCCCeeecCCceEEEEEcCCCCCCCHHHHHHHHHHHHHCC
Confidence 999994 7999988887643 35789999999999999988765321
Q ss_pred ccC------CCc-----e-----------------EEeeCCeeeEEEEEEEEEeCCceeeccC
Q 016390 351 MWP------DGW-----T-----------------AVTADGKRSAQFEHTLLVSAHTYYIFVH 385 (390)
Q Consensus 351 ~~~------d~w-----t-----------------~~t~~g~~~~~~EdtvlVTe~G~EvLT~ 385 (390)
++| ++- . +..++|...+||||||+|+++|++++|.
T Consensus 229 ~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~~~y~~l~e~~g~~vaq~~~T~~v~~~g~~~~t~ 291 (291)
T cd01088 229 TLPFARRWLDRLGETKLLMALKNLCKAGIVYPYPVLKEISGGYVAQFEHTIIVREDGKEVTTR 291 (291)
T ss_pred CCCcChHHhhccchhhHHHHHHHHHHCCCcccCCccEeeCCCeEEEEEEEEEECCCCcEecCC
Confidence 111 111 0 2457899999999999999999999985
No 31
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=100.00 E-value=6.1e-40 Score=298.86 Aligned_cols=206 Identities=32% Similarity=0.531 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCC
Q 016390 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (390)
Q Consensus 148 Ie~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GD 227 (390)
|+.||+|+++++++++.+.+.++||+||.||.+.+++.+.++|+++ .|+.++.+|.|...+|+.|++++|++||
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~------~~~~~v~~g~~~~~~h~~~~~~~i~~gd 74 (207)
T cd01066 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYP------AGPTIVGSGARTALPHYRPDDRRLQEGD 74 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC------CCCcEEEECccccCcCCCCCCCCcCCCC
Confidence 5789999999999999999999999999999999999999999843 4677888888889999999999999999
Q ss_pred eEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCC-ceeccceee
Q 016390 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVKSYCGH 306 (390)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~-~~~~~~~GH 306 (390)
+|++|+++.++||++|++|||++|+++++++++++.+.++++++++.+|||+++.||++++++++++.|+ ....+++||
T Consensus 75 ~v~~d~g~~~~gy~~d~~rt~~~g~~~~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~g~~~~~~~~~Gh 154 (207)
T cd01066 75 LVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGH 154 (207)
T ss_pred EEEEEeceeECCCccceeceeEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCccccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 466778999
Q ss_pred ecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeCCce
Q 016390 307 GIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAHTY 380 (390)
Q Consensus 307 gIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe~G~ 380 (390)
+||+.+||.|.+. .....+|++||||+|||+++. ++..++++||||+||++|+
T Consensus 155 ~iG~~~~e~~~~~----~~~~~~l~~gmv~~iep~~~~-----------------~~~~g~~~ed~v~vt~~g~ 207 (207)
T cd01066 155 GIGLEIHEPPVLK----AGDDTVLEPGMVFAVEPGLYL-----------------PGGGGVRIEDTVLVTEDGP 207 (207)
T ss_pred ccCcccCCCCCcC----CCCCCCcCCCCEEEECCEEEE-----------------CCCcEEEeeeEEEEeCCCC
Confidence 9999999999854 356789999999999998876 2467899999999999985
No 32
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-39 Score=310.35 Aligned_cols=230 Identities=20% Similarity=0.278 Sum_probs=205.7
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccC
Q 016390 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG 216 (390)
Q Consensus 137 ~~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg 216 (390)
..+|.||||.|++.||+||.|+.+++...+..-|++..|..|.+.++..++.+|+.- .+||+.|+.|.|....|+
T Consensus 223 ~~lRlIKSpaEl~~Mr~a~~I~sq~~~~~m~~sr~~~~E~~l~a~~eye~r~rGad~-----~AYpPVVAgG~na~tIHY 297 (488)
T KOG2414|consen 223 ERLRLIKSPAELELMREACNIASQTFSETMFGSRDFHNEAALSALLEYECRRRGADR-----LAYPPVVAGGKNANTIHY 297 (488)
T ss_pred HHHHccCCHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhhHhhhhhhheeecCccc-----cccCCeeecCcccceEEE
Confidence 467999999999999999999999999999999999999999999999999999864 479999999999999999
Q ss_pred CCCCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEe-cCCCHHHHHHHHHHHHHHHHHHHhcCC--CCcHhHHHHHHHHH--
Q 016390 217 IPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKP--GVRFREIGEVINRH-- 291 (390)
Q Consensus 217 ~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~v-G~~~~~~~~l~~~~~~a~~~ai~~~kP--G~~~~eI~~~i~~~-- 291 (390)
.-++..|.++|+|++|.|+.++||.+|++|||.+ |+.++.|++||+++...++..|+.|+| |.+.++|+....+.
T Consensus 298 ~~Nnq~l~d~emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~~~~g~sL~~l~~~s~~Ll~ 377 (488)
T KOG2414|consen 298 VRNNQLLKDDEMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLG 377 (488)
T ss_pred eecccccCCCcEEEEecCcccCceEccceeccCCCCccCcHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 899999999999999999999999999 99999999876544
Q ss_pred --HHHcCCc------------eeccceeeecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCce
Q 016390 292 --ATMSGFS------------VVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWT 357 (390)
Q Consensus 292 --~~~~G~~------------~~~~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt 357 (390)
+++.|.. ...|+.||-+|+++|+-|.++. ...|+|||||||||++|.+.- ..||..|
T Consensus 378 ~~Lk~lGI~kt~~ee~~~~~klcPHhVgHyLGmDVHD~p~v~r------~~pL~pg~ViTIEPGvYIP~d--~d~P~~F- 448 (488)
T KOG2414|consen 378 QELKELGIRKTDREEMIQAEKLCPHHVGHYLGMDVHDCPTVSR------DIPLQPGMVITIEPGVYIPED--DDPPEEF- 448 (488)
T ss_pred HHHHHhCcccchHHHHHhhhhcCCcccchhcCcccccCCCCCC------CccCCCCceEEecCceecCcc--CCCchHh-
Confidence 4555653 2356799999999999999873 369999999999999998532 2355444
Q ss_pred EEeeCCeeeEEEEEEEEEeCCceeeccC
Q 016390 358 AVTADGKRSAQFEHTLLVSAHTYYIFVH 385 (390)
Q Consensus 358 ~~t~~g~~~~~~EdtvlVTe~G~EvLT~ 385 (390)
...|+|+||.|+|+|+|+|+||.
T Consensus 449 -----rGIGiRIEDDV~i~edg~evLT~ 471 (488)
T KOG2414|consen 449 -----RGIGIRIEDDVAIGEDGPEVLTA 471 (488)
T ss_pred -----cCceEEeecceEeccCCceeehh
Confidence 34589999999999999999995
No 33
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=100.00 E-value=7.3e-36 Score=285.77 Aligned_cols=248 Identities=19% Similarity=0.258 Sum_probs=203.0
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccC
Q 016390 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG 216 (390)
Q Consensus 137 ~~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg 216 (390)
.+.|.|||+.||+.||.|++|+++++.+++++++||+.|.++...+......+|+-.. .+|..++|+|.|..+.|+
T Consensus 180 ~E~RviKs~~EieviRya~kISseaH~~vM~~~~pg~~Eyq~eslF~hh~y~~GGcRh----~sYtcIc~sG~ns~vLHY 255 (492)
T KOG2737|consen 180 AECRVIKSSLEIEVIRYANKISSEAHIEVMRAVRPGMKEYQLESLFLHHSYSYGGCRH----LSYTCICASGDNSAVLHY 255 (492)
T ss_pred hhheeeCCHHHHHHHHHHHhhccHHHHHHHHhCCchHhHHhHHHHHHHhhhccCCccc----cccceeeecCCCcceeec
Confidence 4679999999999999999999999999999999999999999999988888876332 368889999999999998
Q ss_pred ----CCCCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEe-cCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHH
Q 016390 217 ----IPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH 291 (390)
Q Consensus 217 ----~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~v-G~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~ 291 (390)
.|+++.+++||.+++|+|+.|.+|.+|+|++|++ |+.+++|+.+|++++.++.++++++|||+...|++....++
T Consensus 256 gha~apNd~~iqdgd~cLfDmGaey~~yaSDITcsFP~nGKFTadqk~VYnaVLda~navm~a~KpGv~W~Dmh~La~kv 335 (492)
T KOG2737|consen 256 GHAGAPNDRTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKFTADQKLVYNAVLDASNAVMEAMKPGVWWVDMHKLAEKV 335 (492)
T ss_pred cccCCCCCcccCCCCEEEEecCcceeeeecccceeccCCCccchhHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 8999999999999999999999999999999999 79999999999999999999999999999999999876554
Q ss_pred ----HHHcCC---------------ceeccceeeecCCccccCCC---------CCCCCCCCCcccccCCcEEEEccccc
Q 016390 292 ----ATMSGF---------------SVVKSYCGHGIGELFHCAPN---------IPHYSRNKAVGVMKVGQTFTIEPMIN 343 (390)
Q Consensus 292 ----~~~~G~---------------~~~~~~~GHgIG~~~he~P~---------i~~~~~~~~~~~l~~GmvftIEP~i~ 343 (390)
+++.|. -...|-.||-||+++|+--- .|........+.|++|||+||||++|
T Consensus 336 lle~laq~gIl~gdvd~m~~ar~~~vF~PHGLGH~lGlDvHDvGGyp~~~~rp~~P~l~~LR~aR~L~e~MviTvEPGcY 415 (492)
T KOG2737|consen 336 LLEHLAQMGILKGDVDEMVEARLGAVFMPHGLGHFLGLDVHDVGGYPEGVERPDEPGLRSLRTARHLKEGMVITVEPGCY 415 (492)
T ss_pred HHHHHHhcCceeccHHHHHHhccCeeeccccccccccccccccCCCCCCCCCCCcchhhhhhhhhhhhcCcEEEecCChh
Confidence 444443 13355689999999997321 12222223457999999999999988
Q ss_pred cCCccc-cccCCCce-------E-EeeCCeeeEEEEEEEEEeCCceeeccCCcc
Q 016390 344 AGVWRD-RMWPDGWT-------A-VTADGKRSAQFEHTLLVSAHTYYIFVHVFY 388 (390)
Q Consensus 344 ~g~~~~-~~~~d~wt-------~-~t~~g~~~~~~EdtvlVTe~G~EvLT~~p~ 388 (390)
+-.+-. ...-|.=+ + ..-.+.+|+|+||.|+||.+|+|.||..|.
T Consensus 416 Fi~~Ll~ealadp~~~~f~n~e~~~rfr~~GGVRIEdDv~vt~~G~enlt~vpr 469 (492)
T KOG2737|consen 416 FIDFLLDEALADPARAEFLNREVLQRFRGFGGVRIEDDVVVTKSGIENLTCVPR 469 (492)
T ss_pred HHHHHHHHHhcChHhhhhhhHHHHHHhhccCceEeeccEEEeccccccccCCCC
Confidence 743310 00111000 0 012478899999999999999999999874
No 34
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=99.92 E-value=2.9e-24 Score=220.10 Aligned_cols=244 Identities=17% Similarity=0.273 Sum_probs=197.2
Q ss_pred CCCCcCCCCccccccccCCHHHHHHHHHHHHHHHHHHHH-----HHHhccCC--CCHHHHHHHHHHHHHHc----CCCCC
Q 016390 126 GTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDA-----AARMIRPG--VTTDEIDRVVHEATITA----GGYPS 194 (390)
Q Consensus 126 g~~~~e~~~~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~-----a~~~i~pG--vTe~ei~~~v~~~~~~~----g~~ps 194 (390)
|....++...+..+..||++.||+.+|+|++++...|.. ...+|..| +|...|...+..++.+. |..|.
T Consensus 121 ~fn~vDis~~ls~l~avKDd~Ei~~irksa~~s~~vm~k~~~~~~~~aiD~ekkvthskLsD~~e~~I~~~k~s~~l~~~ 200 (960)
T KOG1189|consen 121 GFNKVDISLGLSKLFAVKDDEEIANIRKSAAASSAVMNKYLVDELVEAIDEEKKVTHSKLSDLMESAIEDKKYSPGLDPD 200 (960)
T ss_pred CCceeehhhhhhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhccccCcccCcc
Confidence 444444444567889999999999999999999999983 33445554 67777888888777664 33332
Q ss_pred CCCCCcCCceeeeCCC-CccccCCCCCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 016390 195 PLNYHFFPKSCCTSVN-EVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAIS 273 (390)
Q Consensus 195 ~l~~~~fp~~v~~g~n-~~~~Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~ 273 (390)
.+ -+-||+++.+|.+ ..-.....++..| + +|+-.+|++|++||++++|||+| +|+.++++.|+..+.+++++++
T Consensus 201 ~~-d~cY~PIiqSGg~ydlk~sa~s~~~~L--~-~I~cs~G~RynsYCSNv~RT~Li-dpssemq~nY~fLl~aqe~il~ 275 (960)
T KOG1189|consen 201 LL-DMCYPPIIQSGGKYDLKPSAVSDDNHL--H-VILCSLGIRYNSYCSNVSRTYLI-DPSSEMQENYEFLLAAQEEILK 275 (960)
T ss_pred cc-ccccChhhhcCCccccccccccccccc--c-eEEeeccchhhhhhccccceeee-cchHHHHHHHHHHHHHHHHHHH
Confidence 22 2468999999987 4455666778888 4 88999999999999999999999 7899999999999999999999
Q ss_pred hcCCCCcHhHHHHHHHHHHHHcCCceeccc---eeeecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCcccc
Q 016390 274 IVKPGVRFREIGEVINRHATMSGFSVVKSY---CGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDR 350 (390)
Q Consensus 274 ~~kPG~~~~eI~~~i~~~~~~~G~~~~~~~---~GHgIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~ 350 (390)
.||||+..++||.++.+++++.+...+..+ .|.|||++|+|.-.+.+ .+++.+|++||||.|.-++..-+.
T Consensus 276 ~lrpG~ki~dVY~~~l~~v~k~~Pel~~~~~k~lG~~iGlEFREssl~in---aKnd~~lk~gmvFni~lGf~nl~n--- 349 (960)
T KOG1189|consen 276 LLRPGTKIGDVYEKALDYVEKNKPELVPNFTKNLGFGIGLEFRESSLVIN---AKNDRVLKKGMVFNISLGFSNLTN--- 349 (960)
T ss_pred hhcCCCchhHHHHHHHHHHHhcCcchhhhhhhhcccccceeeeccccccc---ccchhhhccCcEEEEeeccccccC---
Confidence 999999999999999999999998754433 79999999999877654 477899999999999987765221
Q ss_pred ccCCCceEEeeCCeeeEEEEEEEEEeCCce-eeccCCcc
Q 016390 351 MWPDGWTAVTADGKRSAQFEHTLLVSAHTY-YIFVHVFY 388 (390)
Q Consensus 351 ~~~d~wt~~t~~g~~~~~~EdtvlVTe~G~-EvLT~~p~ 388 (390)
| ...+.+++.+.|||||+++++ ++||..++
T Consensus 350 --~------~~~~~yaL~l~DTvlv~e~~p~~vLT~~~K 380 (960)
T KOG1189|consen 350 --P------ESKNSYALLLSDTVLVGEDPPAEVLTDSAK 380 (960)
T ss_pred --c------ccccchhhhccceeeecCCCcchhhcccch
Confidence 1 112458899999999999999 99998654
No 35
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.86 E-value=5.3e-21 Score=193.93 Aligned_cols=224 Identities=18% Similarity=0.203 Sum_probs=185.1
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHh----ccCC--CCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeee-C
Q 016390 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARM----IRPG--VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT-S 208 (390)
Q Consensus 136 ~~~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~----i~pG--vTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~-g 208 (390)
...++++|+++|++.||.|----..|+.+.+.. +.-| +||.+++..+++.=..+..+.. -+|+++..+ |
T Consensus 301 i~~~kAiKN~~E~~gmr~shirD~~Alve~~~wle~~~~~g~~itE~~~A~kle~fR~~~~~fmg----lSFeTIS~s~G 376 (606)
T KOG2413|consen 301 ISRAKAIKNDDELKGMRNSHIRDGAALVEYFAWLEKELHKGYTITEYDAADKLEEFRSRQDHFMG----LSFETISSSVG 376 (606)
T ss_pred HHHHHHhcChHHhhhhhhcchhhHHHHHHHHHHHhhhhhcCcccchhhHHHHHHHHHHhhccccC----cCcceeeccCC
Confidence 345678999999999988754444445444443 4456 8999999999988777665543 369998866 9
Q ss_pred CCCccccCCCCC---CcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCC-CCcHhHH
Q 016390 209 VNEVICHGIPDS---RKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKP-GVRFREI 284 (390)
Q Consensus 209 ~n~~~~Hg~p~~---r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kP-G~~~~eI 284 (390)
.|.++.|+.|.. +.+.+..+.++|-|+.|.-=..|+|||+.+|+|++++++.|-.++...-+..++.-| |+..+.+
T Consensus 377 ~NgAviHYsP~~e~n~~i~~~kiyL~DSGaQY~DGTTDvTRT~HfgePs~eek~~yT~VLkGhi~la~~vFP~~t~g~~l 456 (606)
T KOG2413|consen 377 PNGAVIHYSPPAETNRIVSPDKIYLCDSGAQYLDGTTDVTRTVHFGEPTAEEKEAYTLVLKGHIALARAVFPKGTKGSVL 456 (606)
T ss_pred CCceeeecCCCccccceecCceEEEEccCcccccCccceeEEEecCCCCHHHHHHHHHHHHhhhHhhhcccCCCCCcchh
Confidence 999999999964 589999999999999976669999999999999999999999999998888877655 7888888
Q ss_pred HHHHHHHHHHcCCceeccceeeecCC--ccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeC
Q 016390 285 GEVINRHATMSGFSVVKSYCGHGIGE--LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTAD 362 (390)
Q Consensus 285 ~~~i~~~~~~~G~~~~~~~~GHgIG~--~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~ 362 (390)
...++..+.+.|..+-+. +|||||. .+||.|....|..-.+...|++||++++||+.|. +
T Consensus 457 D~laR~~LW~~gLDy~Hg-TGHGVG~fLnVhE~P~~is~r~~~~~~~l~ag~~~s~EPGYY~-----------------d 518 (606)
T KOG2413|consen 457 DALARSALWKAGLDYGHG-TGHGVGSFLNVHEGPIGIGYRPYSSNFPLQAGMVFSIEPGYYK-----------------D 518 (606)
T ss_pred HHHHHHHHHhhccccCCC-CCcccccceEeccCCceeeeeecCCCchhcCceEeccCCcccc-----------------c
Confidence 999999999999988655 9999995 6899998776653345678999999999998886 6
Q ss_pred CeeeEEEEEEEEEeCCcee
Q 016390 363 GKRSAQFEHTLLVSAHTYY 381 (390)
Q Consensus 363 g~~~~~~EdtvlVTe~G~E 381 (390)
|.+|+|+|+.++|.+.+..
T Consensus 519 g~fGIRienv~~vvd~~~~ 537 (606)
T KOG2413|consen 519 GEFGIRIENVVEVVDAGTK 537 (606)
T ss_pred CcceEEEeeEEEEEecccc
Confidence 9999999999999776543
No 36
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=99.85 E-value=1.9e-20 Score=175.21 Aligned_cols=235 Identities=24% Similarity=0.309 Sum_probs=190.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----HcCCCCCCCCCCcCCceeeeCCCCccccCCC
Q 016390 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI----TAGGYPSPLNYHFFPKSCCTSVNEVICHGIP 218 (390)
Q Consensus 143 Ks~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~----~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p 218 (390)
...+...-+|+|+++.+++-..+.+.|+||||..||...++...+ +.|.. +.-+||+.+ |.|.+..|+.|
T Consensus 80 ~~~~i~~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~gl~----aGi~FPtG~--SlN~cAAHyTp 153 (397)
T KOG2775|consen 80 TESDIYQDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENGLN----AGIGFPTGC--SLNHCAAHYTP 153 (397)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhcccc----ccccCCCcc--cccchhhhcCC
Confidence 345667789999999999999999999999999999999876544 33322 234788654 67999999999
Q ss_pred C---CCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHc
Q 016390 219 D---SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS 295 (390)
Q Consensus 219 ~---~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~ 295 (390)
+ ..+|+.+|+..||+|...+|-..|.+.|+.+ ++....|+.+++++...+|+...-.++..||+++|+++++.+
T Consensus 154 NaGd~tVLqydDV~KiDfGthi~GrIiDsAFTv~F---~p~~d~Ll~AvreaT~tGIkeaGiDvRlcdiG~aiqEVmeSy 230 (397)
T KOG2775|consen 154 NAGDKTVLKYDDVMKIDFGTHIDGRIIDSAFTVAF---NPKYDPLLAAVREATNTGIKEAGIDVRLCDIGEAIQEVMESY 230 (397)
T ss_pred CCCCceeeeecceEEEeccccccCeEeeeeeEEee---CccccHHHHHHHHHHhhhhhhcCceeeehhhhHHHHHHhhhe
Confidence 6 4689999999999999999999999999987 567788999999999999999999999999999999999997
Q ss_pred CCc---------eeccceeeecCC-ccccCCCCCCCCCCCCcccccCCcEEEEccccccCCcccc---------------
Q 016390 296 GFS---------VVKSYCGHGIGE-LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDR--------------- 350 (390)
Q Consensus 296 G~~---------~~~~~~GHgIG~-~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~--------------- 350 (390)
-.. .++++.||+|+. .+|..-.+|.. +++....|++|..|+||.+-+.|.....
T Consensus 231 EvEi~Gk~~~VKpIrnLnGHSI~~yrIH~gksVPiV-kgge~trmee~e~yAIETFgSTGkG~v~ddmecSHymkn~~~~ 309 (397)
T KOG2775|consen 231 EVEINGKTYQVKPIRNLNGHSIAQYRIHGGKSVPIV-KGGEQTRMEEGEIYAIETFGSTGKGYVHDDMECSHYMKNFELG 309 (397)
T ss_pred EEEeCCceecceeccccCCCcccceEeecCccccee-cCCcceeecCCeeEEEEeeccCCcceecCCcccchhhhhcccc
Confidence 542 467889999996 46776666643 3567889999999999998777654210
Q ss_pred ---------------------------ccCCCce----------------------EEeeCCeeeEEEEEEEEEeCCcee
Q 016390 351 ---------------------------MWPDGWT----------------------AVTADGKRSAQFEHTLLVSAHTYY 381 (390)
Q Consensus 351 ---------------------------~~~d~wt----------------------~~t~~g~~~~~~EdtvlVTe~G~E 381 (390)
.|-|..+ +...+|.+.+|||||||..+.+-|
T Consensus 310 ~vplrl~~~K~ll~~I~knfgTLaFcrR~lDrlGetKyLmAlk~Lc~~Giv~pyPPLcDi~G~ytAQfEHTIll~pt~KE 389 (397)
T KOG2775|consen 310 HVPLRLQRSKGLLNTIDKNFGTLAFCRRWLDRLGETKYLMALKNLCDMGIVQPYPPLCDIKGSYTAQFEHTILLSPTGKE 389 (397)
T ss_pred ccccccHHHHHHHHHHhhccccccccHHHHHHhhhHHHHHHHHhhhhcccccCCCcccccCcceeeeeceeeEecchhcc
Confidence 1111111 234579999999999999999999
Q ss_pred eccCCc
Q 016390 382 IFVHVF 387 (390)
Q Consensus 382 vLT~~p 387 (390)
|+|+..
T Consensus 390 VvsrGD 395 (397)
T KOG2775|consen 390 VVSRGD 395 (397)
T ss_pred hhcccC
Confidence 999753
No 37
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=99.74 E-value=2.2e-17 Score=167.01 Aligned_cols=243 Identities=14% Similarity=0.181 Sum_probs=183.5
Q ss_pred cCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhc---cCC---CCHHHHHHHHHHHHHHcC------CCCCCCC
Q 016390 130 VEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMI---RPG---VTTDEIDRVVHEATITAG------GYPSPLN 197 (390)
Q Consensus 130 ~e~~~~~~~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i---~pG---vTe~ei~~~v~~~~~~~g------~~ps~l~ 197 (390)
++++..+..+..+|+.+||+.+|.+++.....|+...+.+ --| +|...+...+...+.+-. ..-+.++
T Consensus 158 ~DvslgLsk~~~~KD~~E~an~~~ss~~s~~~M~~~~~em~~~~D~~~kit~~KlsD~mes~iddv~f~q~~s~~l~~~~ 237 (1001)
T COG5406 158 SDVSLGLSKMFLTKDAEEIANCRASSAASSVLMRYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKSLKLGDID 237 (1001)
T ss_pred hhhhhhhhHHhccccHHHHhhccccchHHHHHHHHHHHHHHHHHhhhhhhccchHHHHhhhhcchhhhhhhcCccccccc
Confidence 4444455778899999999999999999999988543332 222 444455444443322111 0111111
Q ss_pred ----CCcCCceeeeCCC-CccccCCCCCCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHH
Q 016390 198 ----YHFFPKSCCTSVN-EVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAI 272 (390)
Q Consensus 198 ----~~~fp~~v~~g~n-~~~~Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai 272 (390)
-+-|.+++.+|.. ...+..+..++.|. ||+|+..+|.+|+|||+.++|||++ +|+.++++-|+.++.+|...+
T Consensus 238 ~d~lew~ytpiiqsg~~~Dl~psa~s~~~~l~-gd~vl~s~GiRYn~YCSn~~RT~l~-dp~~e~~~Ny~fl~~lQk~i~ 315 (1001)
T COG5406 238 LDQLEWCYTPIIQSGGSIDLTPSAFSFPMELT-GDVVLLSIGIRYNGYCSNMSRTILT-DPDSEQQKNYEFLYMLQKYIL 315 (1001)
T ss_pred hhhhhhhcchhhccCceeecccccccCchhhc-CceEEEEeeeeeccccccccceEEe-CCchHhhhhHHHHHHHHHHHH
Confidence 1346778888865 44455555666675 8999999999999999999999999 799999999999999999999
Q ss_pred HhcCCCCcHhHHHHHHHHHHHHcCCceeccc---eeeecCCccccCCCCCCCCCCCCcccccCCcEEEEccccccCCccc
Q 016390 273 SIVKPGVRFREIGEVINRHATMSGFSVVKSY---CGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRD 349 (390)
Q Consensus 273 ~~~kPG~~~~eI~~~i~~~~~~~G~~~~~~~---~GHgIG~~~he~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~ 349 (390)
..+|||....+||..+.+++++.|.....+| .|-+||+.|++.-.+.+ .++.++|+.||+|.|.-++..-..
T Consensus 316 ~~~rpG~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~igiefR~s~~~~n---vkn~r~lq~g~~fnis~gf~nl~~-- 390 (1001)
T COG5406 316 GLVRPGTDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIGIEFRSSQKPFN---VKNGRVLQAGCIFNISLGFGNLIN-- 390 (1001)
T ss_pred hhcCCCCCchhHHHHHHHHHHhcCCccCchHhhhhhhhcccccccccccee---ccCCceeccccEEEEeecccccCC--
Confidence 9999999999999999999999998765554 79999999998765554 356689999999999886654211
Q ss_pred cccCCCceEEeeCCeeeEEEEEEEEEeCCceeeccCCcc
Q 016390 350 RMWPDGWTAVTADGKRSAQFEHTLLVSAHTYYIFVHVFY 388 (390)
Q Consensus 350 ~~~~d~wt~~t~~g~~~~~~EdtvlVTe~G~EvLT~~p~ 388 (390)
|- ....+..++-||+-|+-+-+.++|..|+
T Consensus 391 ---~~------~~Nnyal~l~dt~qi~ls~p~~~t~~~k 420 (1001)
T COG5406 391 ---PH------PKNNYALLLIDTEQISLSNPIVFTDSPK 420 (1001)
T ss_pred ---CC------cccchhhhhccceEeecCCceecccCcc
Confidence 10 1244788999999999888999999885
No 38
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=99.74 E-value=1.8e-16 Score=152.10 Aligned_cols=246 Identities=20% Similarity=0.279 Sum_probs=187.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcC--CCCC---CCCCCcCCceeeeCCCCcccc
Q 016390 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG--GYPS---PLNYHFFPKSCCTSVNEVICH 215 (390)
Q Consensus 141 ~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g--~~ps---~l~~~~fp~~v~~g~n~~~~H 215 (390)
.+-++.-+..+|-|++|+..+|..+.+.+.||++..||...-...+.++- .|-. .--.-+||+ |.++|+++||
T Consensus 14 tia~~~vvtKYk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT--~Isvnncv~h 91 (398)
T KOG2776|consen 14 TIANDSVVTKYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPT--SISVNNCVCH 91 (398)
T ss_pred ccccHHHHhhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccc--eecccceeec
Confidence 56688999999999999999999999999999999999887777665531 1221 111236885 5578999999
Q ss_pred CCCC----CCcCCCCCeEEEeeeeeeCcEEeeeeeEEEecC-----CCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHH
Q 016390 216 GIPD----SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-----ADEASRQLVQCTYECLEKAISIVKPGVRFREIGE 286 (390)
Q Consensus 216 g~p~----~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~-----~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~ 286 (390)
+.|- +..|++||+|.||+|++.+||.+-++.|++|+. ++....+++.++..|.+++++.++||.+-.+|.+
T Consensus 92 ~sPlksd~~~~Lk~GDvVKIdLG~HiDGfiA~vaHT~VV~~~~~~~vtG~kADvI~AAh~A~eaa~rllkpgn~n~~vT~ 171 (398)
T KOG2776|consen 92 FSPLKSDADYTLKEGDVVKIDLGVHIDGFIALVAHTIVVGPAPDTPVTGRKADVIAAAHLAAEAALRLLKPGNTNTQVTR 171 (398)
T ss_pred cCcCCCCCcccccCCCEEEEEeeeeeccceeeeeeeEEeccCCCCcccCchhHHHHHHHHHHHHHHHHhCCCCCCchhhH
Confidence 9982 578999999999999999999999999999984 4568899999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeccceeeecCCcccc-CCCCCCCC-----CCCCcccccCCcEEEEccccccCCcccc----------
Q 016390 287 VINRHATMSGFSVVKSYCGHGIGELFHC-APNIPHYS-----RNKAVGVMKVGQTFTIEPMINAGVWRDR---------- 350 (390)
Q Consensus 287 ~i~~~~~~~G~~~~~~~~GHgIG~~~he-~P~i~~~~-----~~~~~~~l~~GmvftIEP~i~~g~~~~~---------- 350 (390)
+|.+.+.++++..+....-|-.=..+-+ .+.|.... +.-....++.+.|+++....+.|.....
T Consensus 172 ~i~k~aas~~c~pVegmlshql~~~~idGeKtIi~n~sdqq~~~~e~~~fe~~Evya~Di~~stg~~~~K~~~~~~~t~y 251 (398)
T KOG2776|consen 172 AIVKTAASYGCKPVEGMLSHQLKQHVIDGEKTIIQNPSDQQKKEHEKTEFEEHEVYAIDILVSTGEGSPKEGDDRAPTIY 251 (398)
T ss_pred HHHHHHHHhCCcccccchhHHHHhhhhcCCceEecCcchhhhccccccccccceeEEEEEEEecCCCcccccccccceeE
Confidence 9999999999986655455544333322 12222111 1123357788888888876666543111
Q ss_pred ---------------------------ccCCCce--------------------------EEeeCCeeeEEEEEEEEEeC
Q 016390 351 ---------------------------MWPDGWT--------------------------AVTADGKRSAQFEHTLLVSA 377 (390)
Q Consensus 351 ---------------------------~~~d~wt--------------------------~~t~~g~~~~~~EdtvlVTe 377 (390)
..|.... ....+|...+||+.|||+..
T Consensus 252 ~kd~~~~y~LKlKaSR~~~seI~k~~g~~PF~~rs~~~e~r~rmGl~Ec~~~~ll~p~pVl~~kp~~~vaqfk~TvllmP 331 (398)
T KOG2776|consen 252 YKDESVSYMLKLKASRALLSEIKKKFGVMPFTLRSLEEEFRARLGLVECTNHGLLVPYPVLYEKPGEFVAQFKFTVLLMP 331 (398)
T ss_pred EeccchHHHHHHHHHHHHHHHHHhhcCcccccccchhhHHHhhhhhHHhccCccccccceeecCCcchhhheeeEEEecc
Confidence 1111100 13567889999999999999
Q ss_pred CceeeccCCcc
Q 016390 378 HTYYIFVHVFY 388 (390)
Q Consensus 378 ~G~EvLT~~p~ 388 (390)
+|.-.||..|.
T Consensus 332 ng~~~l~~~p~ 342 (398)
T KOG2776|consen 332 NGSLRLTGSPF 342 (398)
T ss_pred CCCccccCCCC
Confidence 99999998664
No 39
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.35 E-value=4.4e-13 Score=140.35 Aligned_cols=50 Identities=34% Similarity=0.783 Sum_probs=44.0
Q ss_pred ccccc-cCCccccccchhhccCCCCCCCcccChhHhhhhhHHHHHhhhhhc
Q 016390 13 LSCVR-CGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAK 62 (390)
Q Consensus 13 ~~c~~-c~~~~~~~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~~~~ 62 (390)
.+|.- =+|+|+||||+|+|+|+++..||||||+|||.+|++||.+|+.+.
T Consensus 63 ~~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~ 113 (606)
T PLN03144 63 AVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRVLHERAA 113 (606)
T ss_pred eeEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHHHHHHHHHHhh
Confidence 34555 478999999999999998778999999999999999999998654
No 40
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.00 E-value=2.7e-06 Score=56.63 Aligned_cols=36 Identities=39% Similarity=1.065 Sum_probs=30.5
Q ss_pred ccccCCccccccchhhccCCCCCCCcccChhHhhhhhHHHHHh
Q 016390 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57 (390)
Q Consensus 15 c~~c~~~~~~~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~ 57 (390)
|..|++++.+.|+.|.. .+|||++|++.+|..||..
T Consensus 1 C~~C~~~~~~~C~~C~~-------~~YCs~~Cq~~~w~~Hk~~ 36 (37)
T PF01753_consen 1 CAVCGKPALKRCSRCKS-------VYYCSEECQRADWPYHKFE 36 (37)
T ss_dssp -TTTSSCSSEEETTTSS-------SEESSHHHHHHHHHHHCCT
T ss_pred CcCCCCCcCCcCCCCCC-------EEecCHHHHHHHHHHHhhh
Confidence 66799988889999963 6999999999999999853
No 41
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=97.54 E-value=3e-05 Score=73.63 Aligned_cols=40 Identities=38% Similarity=0.903 Sum_probs=34.9
Q ss_pred ccccccCCccc-cccchhhccCCCCCCCcccChhHhhhhhHHHHHhhh
Q 016390 13 LSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (390)
Q Consensus 13 ~~c~~c~~~~~-~~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~ 59 (390)
..|.+||.+.. .+|..|+. .-||+|+|+|-.|-.||++.+
T Consensus 320 ~fCstCG~~ga~KrCs~CKa-------v~YCdqeCQk~hWf~HKK~C~ 360 (396)
T KOG1710|consen 320 QFCSTCGHPGAKKRCSQCKA-------VAYCDQECQKFHWFIHKKVCS 360 (396)
T ss_pred ccccccCCCCccchhhhhHH-------HHHHHHHHHHhhhHHHHHHHH
Confidence 35888998774 99999985 369999999999999999986
No 42
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=97.49 E-value=0.0019 Score=58.17 Aligned_cols=102 Identities=25% Similarity=0.297 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCCe
Q 016390 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDI 228 (390)
Q Consensus 149 e~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDi 228 (390)
+.+|++.+.+.++++.+.+.++||++..||.+.+++.+.+.|........ +...+.....+...-...++.+|++|.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~g~~~~~~~~--~Gh~iG~~~~e~~~~~~~~~~~l~~gmv 179 (207)
T cd01066 102 DEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHR--TGHGIGLEIHEPPVLKAGDDTVLEPGMV 179 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCccccCCCC--CccccCcccCCCCCcCCCCCCCcCCCCE
Confidence 57788999999999999999999999999999999999999864211111 1112222222211111124579999999
Q ss_pred EEEeeeeeeC-cEEeeeeeEEEecC
Q 016390 229 VNIDVTVYYK-GVHGDLNETYFVGN 252 (390)
Q Consensus 229 V~iD~g~~~~-GY~~D~~RT~~vG~ 252 (390)
+.|+.+.+.. ++..-+..|++|.+
T Consensus 180 ~~iep~~~~~~~~g~~~ed~v~vt~ 204 (207)
T cd01066 180 FAVEPGLYLPGGGGVRIEDTVLVTE 204 (207)
T ss_pred EEECCEEEECCCcEEEeeeEEEEeC
Confidence 9999999977 58888999999863
No 43
>PLN03158 methionine aminopeptidase; Provisional
Probab=97.41 E-value=0.001 Score=67.40 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=81.3
Q ss_pred EEeeeeeEEEecCCC--HHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCce-eccceee--ecCCcccc
Q 016390 240 VHGDLNETYFVGNAD--EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV-VKSYCGH--GIGELFHC 314 (390)
Q Consensus 240 Y~~D~~RT~~vG~~~--~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~-~~~~~GH--gIG~~~he 314 (390)
.++++.++..|..+. +.++++.+.+.++++++++.++||++-.||..++++.+.++|... ..++.+. ++....
T Consensus 127 ~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a~~~irpGvTe~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svcts~-- 204 (396)
T PLN03158 127 PNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSV-- 204 (396)
T ss_pred cccccccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCccccccccCCCceeeecc--
Confidence 356777778886655 567888999999999999999999999999999999988776432 1111111 111111
Q ss_pred CCCCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeC
Q 016390 315 APNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSA 377 (390)
Q Consensus 315 ~P~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe 377 (390)
...+.|+. .+.++|++|+++.|+.+.+. +|. .+.+..|++|++
T Consensus 205 N~~i~Hgi--p~~r~L~~GDiV~iDvg~~~-----------------~GY-~aD~tRT~~VG~ 247 (396)
T PLN03158 205 NEVICHGI--PDARKLEDGDIVNVDVTVYY-----------------KGC-HGDLNETFFVGN 247 (396)
T ss_pred cccccCCC--CCCccCCCCCEEEEEEeEEE-----------------CCE-EEeEEeEEEcCC
Confidence 12344542 24578999999999987654 454 458899999964
No 44
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=97.41 E-value=0.0014 Score=61.46 Aligned_cols=103 Identities=20% Similarity=0.257 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCceec-cceeeecCCccccCCCCCCCCCCCCcccccCC
Q 016390 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVK-SYCGHGIGELFHCAPNIPHYSRNKAVGVMKVG 333 (390)
Q Consensus 255 ~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~~-~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~G 333 (390)
+.++++.+.+.++++++++.++||++-.||..++.+.+.++|..... .+.++...........++|+. ..+.+|++|
T Consensus 2 ~~lr~A~~i~~~~~~~~~~~~~pG~tE~ev~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~~~~l~~G 79 (238)
T cd01086 2 EGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICTSVNEVVCHGI--PDDRVLKDG 79 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCcceecCCCCceeCCC--CCCcccCCC
Confidence 35788999999999999999999999999999999999999875211 001110000000011234432 245799999
Q ss_pred cEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeC
Q 016390 334 QTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSA 377 (390)
Q Consensus 334 mvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe 377 (390)
+++.++.+... +|. .+.+..|+.|.+
T Consensus 80 d~v~id~g~~~-----------------~GY-~ad~~RT~~~G~ 105 (238)
T cd01086 80 DIVNIDVGVEL-----------------DGY-HGDSARTFIVGE 105 (238)
T ss_pred CEEEEEEEEEE-----------------CCE-EEEEEEEEECCC
Confidence 99999986544 354 568999999975
No 45
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=97.15 E-value=0.0064 Score=55.44 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCCe
Q 016390 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDI 228 (390)
Q Consensus 149 e~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDi 228 (390)
+.+|++.+.+.++++.+.+.++||++-.||.+.+++.+.+.|..+......++ .+.....+...-...++++|++|.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~g~~~~~~~~~Gh--~iG~~~~e~p~i~~~~~~~l~~gmv 180 (208)
T cd01092 103 DELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEYFIHRTGH--GVGLEVHEAPYISPGSDDVLEEGMV 180 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCccccCCCCCcc--ccCcccCcCCCcCCCCCCCcCCCCE
Confidence 36678889999999999999999999999999999999998864321111111 1111111111001124689999999
Q ss_pred EEEeeeeeeCcE-EeeeeeEEEec
Q 016390 229 VNIDVTVYYKGV-HGDLNETYFVG 251 (390)
Q Consensus 229 V~iD~g~~~~GY-~~D~~RT~~vG 251 (390)
+.|+.+.+..|+ -.-+..|++|.
T Consensus 181 ~~iep~~~~~~~~g~~~ed~v~vt 204 (208)
T cd01092 181 FTIEPGIYIPGKGGVRIEDDVLVT 204 (208)
T ss_pred EEECCeEEecCCCEEEeeeEEEEC
Confidence 999999886554 33467788875
No 46
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=97.10 E-value=0.0039 Score=60.68 Aligned_cols=98 Identities=21% Similarity=0.256 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCceeccceeeecCCccccCCCCCCCCCC-CCcccccCC
Q 016390 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRN-KAVGVMKVG 333 (390)
Q Consensus 255 ~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~~~~~GHgIG~~~he~P~i~~~~~~-~~~~~l~~G 333 (390)
+.+++..+.+.++++++++.++||++..||...+++.+.+.|... ++.++.... +.++||..+ .++.+|++|
T Consensus 2 ~~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G~~~-----afp~~is~n--~~~~H~~p~~~d~~~l~~G 74 (291)
T cd01088 2 EKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGP-----AFPVNLSIN--ECAAHYTPNAGDDTVLKEG 74 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCCC-----CCCceeccC--CEeeCCCCCCCCCcccCCC
Confidence 357888999999999999999999999999999999999998532 222222222 234455432 345789999
Q ss_pred cEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeC
Q 016390 334 QTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSA 377 (390)
Q Consensus 334 mvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe 377 (390)
+++.|+.+... +| +.+-...|+.+.+
T Consensus 75 DvV~iD~G~~~-----------------dG-Y~sD~arT~~vg~ 100 (291)
T cd01088 75 DVVKLDFGAHV-----------------DG-YIADSAFTVDFDP 100 (291)
T ss_pred CEEEEEEEEEE-----------------CC-EEEEEEEEEecCh
Confidence 99999986654 35 3556777877754
No 47
>PRK05716 methionine aminopeptidase; Validated
Probab=97.02 E-value=0.0079 Score=56.86 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCc--cccC-C-CCCCcCCC
Q 016390 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHG-I-PDSRKLED 225 (390)
Q Consensus 150 ~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~--~~Hg-~-p~~r~L~~ 225 (390)
..|++.+.+.++++++.+.++||++-.||.+.+++.+.+.|..+. .++.++. +.....+. +.++ . .++.+|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~g~~~~-~~~~GHg--iG~~~~e~p~~~~~~~~~~~~~le~ 195 (252)
T PRK05716 119 EDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVV-REYCGHG--IGRKFHEEPQIPHYGAPGDGPVLKE 195 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeee-cCccccc--cCCccCCCCccCcCCCCCCCCEecC
Confidence 457788888999999999999999999999999999999886542 2222222 22222211 1221 2 24678999
Q ss_pred CCeEEEeeeeee------------------CcEEeeeeeEEEecC
Q 016390 226 GDIVNIDVTVYY------------------KGVHGDLNETYFVGN 252 (390)
Q Consensus 226 GDiV~iD~g~~~------------------~GY~~D~~RT~~vG~ 252 (390)
|.++.|+.+.+. +++..-+..|++|.+
T Consensus 196 Gmv~~vEp~i~~~~~~~~~~~~~~~~~~~~g~~g~~~ed~v~Vt~ 240 (252)
T PRK05716 196 GMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTE 240 (252)
T ss_pred CCEEEEccEEEcCCCceEEcCCCCEEEccCCCcEEeeeeEEEEcC
Confidence 999999988864 345666788888864
No 48
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=96.91 E-value=0.014 Score=55.16 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCc--cccCC--CCCCcCCC
Q 016390 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHGI--PDSRKLED 225 (390)
Q Consensus 150 ~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~--~~Hg~--p~~r~L~~ 225 (390)
.+|++.+++.++++.+++.++||++-.||...+.+.+.+.|..+. .++.++ .+.....+. +..+. .++.+|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~-~~~~GH--giG~~~~e~p~i~~~~~~~~~~~l~~ 193 (247)
T TIGR00500 117 EAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVV-REYCGH--GIGRKFHEEPQIPNYGKKFTNVRLKE 193 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec-cCccCC--ccCcccCCCCccCCcCcCCCCCEecC
Confidence 357788888999999999999999999999999999999886542 122222 233222221 12211 23678999
Q ss_pred CCeEEEeeeeee------------------CcEEeeeeeEEEecC
Q 016390 226 GDIVNIDVTVYY------------------KGVHGDLNETYFVGN 252 (390)
Q Consensus 226 GDiV~iD~g~~~------------------~GY~~D~~RT~~vG~ 252 (390)
|.++.|+.+.+. +++..-+..|++|.+
T Consensus 194 gmv~~iEp~i~~~~~~~~~~~~~~~~~~~~~~~g~ried~v~Vt~ 238 (247)
T TIGR00500 194 GMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITD 238 (247)
T ss_pred CCEEEEeeEEEcCCCcEEECCCCCEEEccCCCeEEEEeEEEEEcC
Confidence 999999988775 245566778888853
No 49
>PRK15173 peptidase; Provisional
Probab=96.87 E-value=0.013 Score=57.86 Aligned_cols=102 Identities=11% Similarity=0.106 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCCeE
Q 016390 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIV 229 (390)
Q Consensus 150 ~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDiV 229 (390)
..|++.+++.++++.+++.++||++-.||...+.+.+.+.|.......+.++...+..|..+.-.-...++.+|++|.++
T Consensus 203 ~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~~G~~~~~~~~~GHGiG~~lg~~E~P~i~~~~~~~Le~GMV~ 282 (323)
T PRK15173 203 ITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEESPFVSTHATESFTSGMVL 282 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCCCCCcCCCCCCcCCCCCCCCCCCCccCCCCEE
Confidence 45788889999999999999999999999999999999988532211111221111123333211111245789999999
Q ss_pred EEeeeeeeCcE-EeeeeeEEEec
Q 016390 230 NIDVTVYYKGV-HGDLNETYFVG 251 (390)
Q Consensus 230 ~iD~g~~~~GY-~~D~~RT~~vG 251 (390)
.|..+.+..|. -.-+..|++|.
T Consensus 283 tiEPgiy~~g~ggvriEDtvlVT 305 (323)
T PRK15173 283 SLETPYYGYNLGSIMIEDMILIN 305 (323)
T ss_pred EECCEEEcCCCcEEEEeeEEEEc
Confidence 99999874443 35678899985
No 50
>PRK12896 methionine aminopeptidase; Reviewed
Probab=96.87 E-value=0.007 Score=57.33 Aligned_cols=110 Identities=18% Similarity=0.215 Sum_probs=74.8
Q ss_pred eeeEEEecCCCH--HHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCceecc-cee----eecCCccccCC
Q 016390 244 LNETYFVGNADE--ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKS-YCG----HGIGELFHCAP 316 (390)
Q Consensus 244 ~~RT~~vG~~~~--~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~~~-~~G----HgIG~~~he~P 316 (390)
-.|++.|-++.+ ..+++.+.+.++++++++.++||++-.||...+...+.+.|...... +.+ -.+|.. .
T Consensus 4 ~~~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n----~ 79 (255)
T PRK12896 4 EGRGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCISVN----E 79 (255)
T ss_pred cCCceeECCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHCCCEeCcccCCCCCcceEecCC----C
Confidence 357887854443 56678888888899999999999999999999999999988752110 011 111211 1
Q ss_pred CCCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeC
Q 016390 317 NIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSA 377 (390)
Q Consensus 317 ~i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe 377 (390)
.++|+. .+..+|++|.++.++.+... +| +.+.+.-|+++.+
T Consensus 80 ~~~h~~--p~~~~l~~Gd~v~iD~g~~~-----------------~g-Y~aD~~RT~~vG~ 120 (255)
T PRK12896 80 EVAHGI--PGPRVIKDGDLVNIDVSAYL-----------------DG-YHGDTGITFAVGP 120 (255)
T ss_pred eeEecC--CCCccCCCCCEEEEEEeEEE-----------------Cc-EEEeeEEEEECCC
Confidence 223432 23478999999999986654 23 4567788888753
No 51
>PRK14575 putative peptidase; Provisional
Probab=96.68 E-value=0.02 Score=58.36 Aligned_cols=99 Identities=11% Similarity=0.165 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceee--eCCCC--ccccCCCCCCcCCC
Q 016390 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNE--VICHGIPDSRKLED 225 (390)
Q Consensus 150 ~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~--~g~n~--~~~Hg~p~~r~L~~ 225 (390)
..|++.+++.++++.++++++||++-.||++.+.+.+.+.|.......+ +...+. .|..+ .+.+ -++.+|++
T Consensus 286 ~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~~~~G~~~~~~~~--~GHGiG~~lg~~e~P~i~~--~~~~~Le~ 361 (406)
T PRK14575 286 ITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGH--LGHGNGVFLGLEESPFVST--HATESFTS 361 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCC--CCCcccCCCCCccCCCCCC--CCCCCcCC
Confidence 3577888899999999999999999999999999999988753221111 222232 23332 1112 24578999
Q ss_pred CCeEEEeeeeeeCcE-EeeeeeEEEecC
Q 016390 226 GDIVNIDVTVYYKGV-HGDLNETYFVGN 252 (390)
Q Consensus 226 GDiV~iD~g~~~~GY-~~D~~RT~~vG~ 252 (390)
|.++.|..+.+..|. -.-+..|++|.+
T Consensus 362 GMv~tiEpgiy~~g~gGvriEDtvlVT~ 389 (406)
T PRK14575 362 GMVLSLETPYYGYNLGSIMIEDMILINK 389 (406)
T ss_pred CCEEEECCeeecCCCcEEEEEeEEEEcC
Confidence 999999999886543 356789999953
No 52
>PRK12897 methionine aminopeptidase; Reviewed
Probab=96.67 E-value=0.017 Score=54.68 Aligned_cols=100 Identities=14% Similarity=0.169 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCC--ccccCC-C-CCCcCCC
Q 016390 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE--VICHGI-P-DSRKLED 225 (390)
Q Consensus 150 ~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~--~~~Hg~-p-~~r~L~~ 225 (390)
..|++.+++.++++.+++.++||++..|++..+.+.+.+.|.... .++.++ .+..+..+ .+.+.. + +..+|++
T Consensus 118 ~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~g~~~~-~~~~GH--giGl~~hE~P~i~~~~~~~~~~~l~~ 194 (248)
T PRK12897 118 EAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVA-RDFTGH--GIGKEIHEEPAIFHFGKQGQGPELQE 194 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHcCCccC-CCeEEC--ccCCcccCCCccCCCCCCCCCCCcCC
Confidence 356777889999999999999999999999999999998885432 222222 23223222 122222 2 3468999
Q ss_pred CCeEEEeeeeee-----------------Cc-EEeeeeeEEEecC
Q 016390 226 GDIVNIDVTVYY-----------------KG-VHGDLNETYFVGN 252 (390)
Q Consensus 226 GDiV~iD~g~~~-----------------~G-Y~~D~~RT~~vG~ 252 (390)
|.++.|..+.+. +| +..-+..|++|.+
T Consensus 195 Gmv~tiEP~~~~~~~~~~~~~~~~~~~~~~g~~g~r~edtv~Vt~ 239 (248)
T PRK12897 195 GMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITK 239 (248)
T ss_pred CCEEEECCeEecCCCceEECCCCcEEEcCCCCeEeecceEEEEeC
Confidence 999999998872 44 5667788888853
No 53
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=96.65 E-value=0.03 Score=52.50 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCcccc---C--CCCCCcCC
Q 016390 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH---G--IPDSRKLE 224 (390)
Q Consensus 150 ~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H---g--~p~~r~L~ 224 (390)
..|++.+++.++++.+.+.++||++-.||++.+.+.+.++|...... ..+...+.....+...+ . .-++.+|+
T Consensus 110 ~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~G~~~~~~--~~~GHgiGl~~he~~~~~g~~~~~~~~~~Le 187 (228)
T cd01090 110 AHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRYRT--FGYGHSFGVLSHYYGREAGLELREDIDTVLE 187 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCcccc--cccCcccccccccCCCccccccCCCCCCccC
Confidence 36788889999999999999999999999999999999988543211 11222232222222111 0 11358899
Q ss_pred CCCeEEEeeeeeeC----cE-EeeeeeEEEecC
Q 016390 225 DGDIVNIDVTVYYK----GV-HGDLNETYFVGN 252 (390)
Q Consensus 225 ~GDiV~iD~g~~~~----GY-~~D~~RT~~vG~ 252 (390)
+|.++.|+.+.+.. |. ---+..|++|.+
T Consensus 188 ~GMV~~iEP~i~~~~~~~g~gG~ried~v~Vt~ 220 (228)
T cd01090 188 PGMVVSMEPMIMLPEGQPGAGGYREHDILVINE 220 (228)
T ss_pred CCCEEEECCEEeecccCCCCcEEEeeeEEEECC
Confidence 99999999998863 32 233788888853
No 54
>PRK09795 aminopeptidase; Provisional
Probab=96.64 E-value=0.031 Score=55.95 Aligned_cols=106 Identities=18% Similarity=0.190 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcC
Q 016390 144 TPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKL 223 (390)
Q Consensus 144 s~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L 223 (390)
.+++-+.+|++-+++.++.+.+.+.++||++-.||++.+.+.+.+.|.........++ .+.....+.......++.+|
T Consensus 235 ~~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~~~~~~g~~~~~~h~~GH--giGl~~he~p~i~~~~~~~l 312 (361)
T PRK09795 235 VSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGH--AIGIEVHEDPRFSPRDTTTL 312 (361)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCccCCCCCCc--cCCccccCCCCcCCCCCCCc
Confidence 3555567889999999999999999999999999999999999988753321111111 22222222111111246899
Q ss_pred CCCCeEEEeeeeeeCcE-EeeeeeEEEec
Q 016390 224 EDGDIVNIDVTVYYKGV-HGDLNETYFVG 251 (390)
Q Consensus 224 ~~GDiV~iD~g~~~~GY-~~D~~RT~~vG 251 (390)
++|.++.|+.+.+..|. -.-+..|++|.
T Consensus 313 ~~gmv~~iEpgiy~~~~~gvriEd~v~vt 341 (361)
T PRK09795 313 QPGMLLTVEPGIYLPGQGGVRIEDVVLVT 341 (361)
T ss_pred CCCCEEEECCEEEeCCCCEEEEeeEEEEC
Confidence 99999999999987654 34567788885
No 55
>PRK14576 putative endopeptidase; Provisional
Probab=96.58 E-value=0.028 Score=57.26 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceee--eCCCCccccCCCCCCcCCCCC
Q 016390 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNEVICHGIPDSRKLEDGD 227 (390)
Q Consensus 150 ~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~--~g~n~~~~Hg~p~~r~L~~GD 227 (390)
..|++.+++.+++++++++++||++-.||+..+.+.+.+.|.......+.+ .++. .|..+......-++.+|++|.
T Consensus 285 ~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~~~G~~~~~~~~~G--HgiG~~l~~~e~P~i~~~~~~~Le~GM 362 (405)
T PRK14576 285 LTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSGLPHYNRGHLG--HGDGVFLGLEEVPFVSTQATETFCPGM 362 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCCCC--CCCCCCCCcCcCCCcCCCCCCccCCCC
Confidence 467788889999999999999999999999999999999885322111112 2222 333332111112467899999
Q ss_pred eEEEeeeeeeCc-EEeeeeeEEEec
Q 016390 228 IVNIDVTVYYKG-VHGDLNETYFVG 251 (390)
Q Consensus 228 iV~iD~g~~~~G-Y~~D~~RT~~vG 251 (390)
++.++.+.+..| .-.-+..|++|.
T Consensus 363 v~~vEp~~y~~g~ggvriEDtvlVT 387 (405)
T PRK14576 363 VLSLETPYYGIGVGSIMLEDMILIT 387 (405)
T ss_pred EEEECCceeecCCCEEEEeeEEEEC
Confidence 999998776544 334478899985
No 56
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=96.52 E-value=0.026 Score=53.57 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCce----eeeCCCCccccCCC-CCCcC
Q 016390 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKS----CCTSVNEVICHGIP-DSRKL 223 (390)
Q Consensus 149 e~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~----v~~g~n~~~~Hg~p-~~r~L 223 (390)
+.+|++.+++.++.+++.+.++||++-.||.+.+.+.+.+.+..-. ..|++. +.....+....-.+ ++++|
T Consensus 119 ~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~~~~~~~----~~~~~~~GHgiGle~hE~~~~l~~~~~~~L 194 (243)
T cd01091 119 SEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKKKPELE----PNFTKNLGFGIGLEFRESSLIINAKNDRKL 194 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhChhHH----HhCcCCcccccCcccccCccccCCCCCCCc
Confidence 3567788999999999999999999999999999999888652111 012222 22222332111112 35899
Q ss_pred CCCCeEEEeeeee-e----------CcEEeeeeeEEEecC
Q 016390 224 EDGDIVNIDVTVY-Y----------KGVHGDLNETYFVGN 252 (390)
Q Consensus 224 ~~GDiV~iD~g~~-~----------~GY~~D~~RT~~vG~ 252 (390)
++|.++.|..|.+ . +.|-.-+..|++|.+
T Consensus 195 ~~GMvf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~Vt~ 234 (243)
T cd01091 195 KKGMVFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVTE 234 (243)
T ss_pred CCCCEEEEeCCcccccCccccCccCCeeEEEEEEEEEEcC
Confidence 9999999999987 3 257778899999964
No 57
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=96.48 E-value=0.027 Score=57.08 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCcc----ccCCC-CCCcCC
Q 016390 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVI----CHGIP-DSRKLE 224 (390)
Q Consensus 150 ~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~----~Hg~p-~~r~L~ 224 (390)
.+|++.+++.+++++++++++||+|-.||++.+.+.+.+.|... ....+++ +..+..... +.-.| ++.+|+
T Consensus 271 ~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~~~~~~~~~G~~~--~h~~Ghg--iGl~~~~~~~e~~~~l~~~~~~~L~ 346 (391)
T TIGR02993 271 AFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAFFAVLKKYGIHK--DSRTGYP--IGLSYPPDWGERTMSLRPGDNTVLK 346 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCcc--CCCceee--eccCcCCCCCCccccccCCCCceec
Confidence 46778889999999999999999999999999999999988643 1222332 221111000 00012 357899
Q ss_pred CCCeEEEeeeeeeCcEEeeeeeEEEec
Q 016390 225 DGDIVNIDVTVYYKGVHGDLNETYFVG 251 (390)
Q Consensus 225 ~GDiV~iD~g~~~~GY~~D~~RT~~vG 251 (390)
+|.++.|.-+.+..|+..-+..|++|.
T Consensus 347 ~GMv~tvEpgiy~~~~Gvried~v~VT 373 (391)
T TIGR02993 347 PGMTFHFMTGLWMEDWGLEITESILIT 373 (391)
T ss_pred CCCEEEEcceeEeCCCCeEEeeEEEEC
Confidence 999999999999888766788899995
No 58
>PRK12318 methionine aminopeptidase; Provisional
Probab=96.42 E-value=0.039 Score=53.79 Aligned_cols=86 Identities=20% Similarity=0.245 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCc--cccCCC-CCCcCCCC
Q 016390 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHGIP-DSRKLEDG 226 (390)
Q Consensus 150 ~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~--~~Hg~p-~~r~L~~G 226 (390)
.+|++.+++.++++.+++.++||++-.||++.+.+.+.+.|.... ..+.++ .+.....+. +.+..+ ++.+|++|
T Consensus 159 ~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a~~~~~~~~G~~~~-~~~~GH--gIGl~~hE~P~i~~~~~~~~~~L~~G 235 (291)
T PRK12318 159 IKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVV-DQFVGH--GVGIKFHENPYVPHHRNSSKIPLAPG 235 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccC-CCcccC--CcCccccCCCcccCcCCCCCCEeCCC
Confidence 457888899999999999999999999999999999999886421 112222 233332221 222222 24689999
Q ss_pred CeEEEeeeeeeC
Q 016390 227 DIVNIDVTVYYK 238 (390)
Q Consensus 227 DiV~iD~g~~~~ 238 (390)
.++.|+.+.+..
T Consensus 236 MV~~iEP~i~~~ 247 (291)
T PRK12318 236 MIFTIEPMINVG 247 (291)
T ss_pred CEEEECCEEEcC
Confidence 999999888754
No 59
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=96.42 E-value=0.038 Score=51.96 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcC----CCC------------CCCCCCcCCceeeeCCCCcc
Q 016390 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG----GYP------------SPLNYHFFPKSCCTSVNEVI 213 (390)
Q Consensus 150 ~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g----~~p------------s~l~~~~fp~~v~~g~n~~~ 213 (390)
.+|++.+.+.++++.+.+.++||++-.||.+.+.+.+.+.+ ..+ ..+..+.+...+.....+..
T Consensus 104 ~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiGl~~~e~p 183 (243)
T cd01087 104 EQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHDVG 183 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCcccCchHhhhhhhhhhhhcCCCCccccCcccccCc
Confidence 45677888999999999999999999999999988887653 111 01100111222222222221
Q ss_pred cc--CCCCCCcCCCCCeEEEeeeeeeCc-----------EEeeeeeEEEecC
Q 016390 214 CH--GIPDSRKLEDGDIVNIDVTVYYKG-----------VHGDLNETYFVGN 252 (390)
Q Consensus 214 ~H--g~p~~r~L~~GDiV~iD~g~~~~G-----------Y~~D~~RT~~vG~ 252 (390)
.. ...++.+|++|.++.|..+.+..+ +-.-+..|++|.+
T Consensus 184 ~~~~~~~~~~~l~~GMv~~iEp~iy~~~~~~~~~~~~~~~g~~ied~v~Vt~ 235 (243)
T cd01087 184 GYLRYLRRARPLEPGMVITIEPGIYFIPDLLDVPEYFRGGGIRIEDDVLVTE 235 (243)
T ss_pred cccccCCCCCCCCCCCEEEECCEEEeCCcccccccccceeEEEeeeEEEEcC
Confidence 11 112457899999999999998654 5667788998853
No 60
>PRK07281 methionine aminopeptidase; Reviewed
Probab=96.36 E-value=0.038 Score=53.74 Aligned_cols=85 Identities=11% Similarity=0.126 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCc--cccC-CC-CCCcCCC
Q 016390 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHG-IP-DSRKLED 225 (390)
Q Consensus 150 ~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~--~~Hg-~p-~~r~L~~ 225 (390)
..|++.+++.++++.+++.++||++-.||++.+.+.+.++|... ..++.++ .|.....+. +.+. .+ ++.+|++
T Consensus 149 ~~~~l~~~~~ea~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~-~~~~~GH--GIGl~~hE~P~i~~~~~~~~~~~Le~ 225 (286)
T PRK07281 149 EVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRGYGV-VRDLVGH--GVGPTMHEEPMVPNYGTAGRGLRLRE 225 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-CCCeeee--eCCCccCCCCcCCCcccCCCCCEECC
Confidence 35789999999999999999999999999999999998876532 1122222 122222221 2222 12 3468999
Q ss_pred CCeEEEeeeeee
Q 016390 226 GDIVNIDVTVYY 237 (390)
Q Consensus 226 GDiV~iD~g~~~ 237 (390)
|.++.|..+.+.
T Consensus 226 GMV~tiEPgiy~ 237 (286)
T PRK07281 226 GMVLTIEPMINT 237 (286)
T ss_pred CCEEEECCeeEc
Confidence 999999999875
No 61
>PRK08671 methionine aminopeptidase; Provisional
Probab=96.08 E-value=0.11 Score=50.71 Aligned_cols=95 Identities=26% Similarity=0.292 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccC--------CCCCC
Q 016390 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG--------IPDSR 221 (390)
Q Consensus 150 ~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg--------~p~~r 221 (390)
..+++.+.+.++++.+++.++||++..||.+.+++.+.+.|..+. .+..++. .|.+ ..|. ..++.
T Consensus 102 ~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~~G~~~~-~~~~GHg----iG~~--~~he~p~ip~~~~~~~~ 174 (291)
T PRK08671 102 KYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPI-RNLTGHG----LERY--ELHAGPSIPNYDEGGGV 174 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-CCCcccC----cCCC--cccCCCccCccCCCCCc
Confidence 456788888999999999999999999999999999999987653 2222221 1211 1222 12357
Q ss_pred cCCCCCeEEEeeeee-eCcEEeeeeeEEEec
Q 016390 222 KLEDGDIVNIDVTVY-YKGVHGDLNETYFVG 251 (390)
Q Consensus 222 ~L~~GDiV~iD~g~~-~~GY~~D~~RT~~vG 251 (390)
+|++|+++.|+..+. -.|+..|-.+|-+..
T Consensus 175 ~le~GmV~aIEp~~t~G~G~v~~~~~~~iy~ 205 (291)
T PRK08671 175 KLEEGDVYAIEPFATDGEGKVVEGPEVEIYS 205 (291)
T ss_pred eeCCCCEEEEcceEECCCCeEecCCceEEEe
Confidence 899999999998765 467777777776654
No 62
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=95.92 E-value=0.085 Score=49.29 Aligned_cols=99 Identities=17% Similarity=0.227 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCC-CCCcCCceeeeCCCCccccCCCCCCcCCCCC
Q 016390 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL-NYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (390)
Q Consensus 149 e~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l-~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GD 227 (390)
...+++.+.+.++++++++.++||++-.||+..+.+.+.+.|..+..- ..+.+...+.++.+... -..+|++|.
T Consensus 120 ~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~~~G~~~~~~~~~h~~g~~~~~~~~~~~-----~~~~l~~gm 194 (228)
T cd01089 120 GKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVVSSGEGKAK-----LVECVKHGL 194 (228)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCEEecCccccCcCceEecCCCCcc-----chhhccCCc
Confidence 467788889999999999999999999999999999999998532210 00111112232221110 146799999
Q ss_pred eEEEeeeeeeCc-EEeeeeeEEEecC
Q 016390 228 IVNIDVTVYYKG-VHGDLNETYFVGN 252 (390)
Q Consensus 228 iV~iD~g~~~~G-Y~~D~~RT~~vG~ 252 (390)
++.+....+..| +..-+..|++|.+
T Consensus 195 vf~~ep~~~~~g~~~~~~~~Tv~vt~ 220 (228)
T cd01089 195 LFPYPVLYEKEGEVVAQFKLTVLLTP 220 (228)
T ss_pred ccccceeEccCCCeEEEEEEEEEEcC
Confidence 999999998765 7788999999963
No 63
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=95.83 E-value=0.12 Score=47.18 Aligned_cols=98 Identities=21% Similarity=0.258 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHH-HHHcCCceeccceeeecCCccccCCCCCCCCCCCCcccccCC
Q 016390 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH-ATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVG 333 (390)
Q Consensus 255 ~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~-~~~~G~~~~~~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~G 333 (390)
+..|++.+.+.++++++++.++||++-.||...+.+. +.+.|........-=+.|. ...++|+. .+.+.|++|
T Consensus 1 e~~R~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~~g~~~~~~~~~~~~g~----~~~~~~~~--~~~~~l~~g 74 (207)
T PF00557_consen 1 ECMRKAARIADAAMEAAMEALRPGMTEYEIAAAIERAMLRRHGGEEPAFPPIVGSGP----NTDLPHYT--PTDRRLQEG 74 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCBHHHHHHHHHHHHHHHTTTTEESSESEEEECC----CCGETTTB--CCSSBESTT
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHcCCCcccCCceEecCC----cceeccee--ccceeeecC
Confidence 3578899999999999999999999999999999987 6777744221101111222 11224442 246789999
Q ss_pred cEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEe
Q 016390 334 QTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376 (390)
Q Consensus 334 mvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVT 376 (390)
+++.|+-.... +.+.+.+.-|+++.
T Consensus 75 d~v~id~~~~~------------------~gy~~d~~Rt~~~G 99 (207)
T PF00557_consen 75 DIVIIDFGPRY------------------DGYHADIARTFVVG 99 (207)
T ss_dssp EEEEEEEEEEE------------------TTEEEEEEEEEESS
T ss_pred Ccceeecccee------------------eeeEeeeeeEEEEe
Confidence 99999976554 23456677888763
No 64
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=95.81 E-value=0.083 Score=53.64 Aligned_cols=104 Identities=18% Similarity=0.207 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCceecc--ceeeecCCc--cccCCCCCCCCCC--CCccc
Q 016390 256 ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKS--YCGHGIGEL--FHCAPNIPHYSRN--KAVGV 329 (390)
Q Consensus 256 ~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~~~--~~GHgIG~~--~he~P~i~~~~~~--~~~~~ 329 (390)
.+++.-+.+.++++++++.++||++..||.+.+++.+++.+-..... ...+|++.- +--.-.++||... +...+
T Consensus 21 ~~r~Aa~Ia~~~l~~~~~~ikpG~t~~el~~~~~~~i~~~~a~~~~~~~~~~~g~afpt~vSvN~~v~H~~P~~~d~~~~ 100 (389)
T TIGR00495 21 KYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAKIFKKEKEMEKGIAFPTCISVNNCVGHFSPLKSDQDYI 100 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCeEEecCCeeeCCCCCCCCCCcC
Confidence 46677788888999999999999999999999988888754221110 011222210 0012234555421 23478
Q ss_pred ccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeC
Q 016390 330 MKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSA 377 (390)
Q Consensus 330 l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe 377 (390)
|++|.++.|+-+... +| +.+-+.+|+.|.+
T Consensus 101 Lk~GDvVkIDlG~~i-----------------dG-Y~aD~arTv~vG~ 130 (389)
T TIGR00495 101 LKEGDVVKIDLGCHI-----------------DG-FIALVAHTFVVGV 130 (389)
T ss_pred cCCCCEEEEEEEEEE-----------------CC-EEEEEEEEEEECC
Confidence 999999999987654 34 4677899999974
No 65
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=95.40 E-value=0.12 Score=49.38 Aligned_cols=87 Identities=22% Similarity=0.226 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCce-ecccee--eecCCccccCCCCCCCCCCCCccccc
Q 016390 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV-VKSYCG--HGIGELFHCAPNIPHYSRNKAVGVMK 331 (390)
Q Consensus 255 ~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~-~~~~~G--HgIG~~~he~P~i~~~~~~~~~~~l~ 331 (390)
+.+++.-+.+.++++++.+.++||++..||.+.++++++++|.-. ...+-| -.+.+.+-+ .+.|+..+ +..+|+
T Consensus 12 ek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe--~v~HgiP~-d~~vlk 88 (255)
T COG0024 12 EKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNE--VVAHGIPG-DKKVLK 88 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhh--eeeecCCC-CCcccC
Confidence 356777778888999999999999999999999999999866432 112112 222222211 12333323 678999
Q ss_pred CCcEEEEcccccc
Q 016390 332 VGQTFTIEPMINA 344 (390)
Q Consensus 332 ~GmvftIEP~i~~ 344 (390)
+|.++.|.-++..
T Consensus 89 ~GDiv~IDvg~~~ 101 (255)
T COG0024 89 EGDIVKIDVGAHI 101 (255)
T ss_pred CCCEEEEEEEEEE
Confidence 9999999987665
No 66
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=95.39 E-value=0.17 Score=49.36 Aligned_cols=98 Identities=17% Similarity=0.208 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCceeccceeeecCCccccCCCCCCCCCC-CCcccccCC
Q 016390 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRN-KAVGVMKVG 333 (390)
Q Consensus 255 ~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~~~~~GHgIG~~~he~P~i~~~~~~-~~~~~l~~G 333 (390)
+..++.-+.+.++++.+++.++||++..||...+++.+.+.|... .| .-.|.. ....+||..+ .++.+|++|
T Consensus 6 ~~~r~A~~I~~~~~~~~~~~i~~G~se~el~~~~e~~~~~~g~~~--aF-p~~vs~----n~~~~H~~p~~~d~~~l~~G 78 (295)
T TIGR00501 6 EKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEP--AF-PCNISI----NECAAHFTPKAGDKTVFKDG 78 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC--CC-Ccceec----CCEeeCCCCCCCcCccCCCC
Confidence 356778888999999999999999999999999999999988652 11 111111 1122333222 235689999
Q ss_pred cEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeC
Q 016390 334 QTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSA 377 (390)
Q Consensus 334 mvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe 377 (390)
.++.|+.+... +| +.+-+..|+.+.+
T Consensus 79 DvV~iD~G~~~-----------------dG-Y~aD~arT~~vG~ 104 (295)
T TIGR00501 79 DVVKLDLGAHV-----------------DG-YIADTAITVDLGD 104 (295)
T ss_pred CEEEEEEeEEE-----------------CC-EEEEEEEEEEeCc
Confidence 99999986543 45 4667888988864
No 67
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=95.37 E-value=0.18 Score=50.95 Aligned_cols=112 Identities=26% Similarity=0.265 Sum_probs=75.6
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceee--eCCCCccc
Q 016390 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNEVIC 214 (390)
Q Consensus 137 ~~~r~vKs~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~--~g~n~~~~ 214 (390)
.+...+..+.+ .+|+.-.++.+++++++++++||++-.||++.+.+.+.+.|.-..... ++...+. ..+.+...
T Consensus 252 TRT~~~G~~~~--~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar~~i~~~g~~~~~~h--~~GHgvG~~l~vhE~p~ 327 (384)
T COG0006 252 TRTFPIGKPSD--EQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYFLH--GTGHGVGFVLDVHEHPQ 327 (384)
T ss_pred eeEEecCCCCH--HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcCCcccccC--CccccCCCCcccCcCcc
Confidence 33444543332 346888899999999999999999999999999999999664322111 1111222 11111110
Q ss_pred cCCC-CCCcCCCCCeEEEeeeeee-CcEEeeeeeEEEecC
Q 016390 215 HGIP-DSRKLEDGDIVNIDVTVYY-KGVHGDLNETYFVGN 252 (390)
Q Consensus 215 Hg~p-~~r~L~~GDiV~iD~g~~~-~GY~~D~~RT~~vG~ 252 (390)
.-.| ++.+|++|-++.++.+.++ +.+-.-+..+++|.+
T Consensus 328 ~~~~~~~~~L~~GMv~t~Epg~y~~g~~GirIEd~vlVte 367 (384)
T COG0006 328 YLSPGSDTTLEPGMVFSIEPGIYIPGGGGVRIEDTVLVTE 367 (384)
T ss_pred ccCCCCCccccCCcEEEeccccccCCCceEEEEEEEEEcC
Confidence 1112 4679999999999999874 558888999999965
No 68
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.086 Score=50.81 Aligned_cols=86 Identities=20% Similarity=0.243 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCcee-ccce--eeecCCccccCCCCCCCCCCCCccccc
Q 016390 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV-KSYC--GHGIGELFHCAPNIPHYSRNKAVGVMK 331 (390)
Q Consensus 255 ~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~-~~~~--GHgIG~~~he~P~i~~~~~~~~~~~l~ 331 (390)
+.+++..+.+++++++|...+|||++-.||.+++.+.+-++|.-.. .+|- --++-..+.|- |-|.. -+.++||
T Consensus 123 e~mR~ac~LarevLd~Aa~~v~PgvTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEv--iCHGI--PD~RpLe 198 (369)
T KOG2738|consen 123 EGMRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEV--ICHGI--PDSRPLE 198 (369)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhhe--eecCC--CCcCcCC
Confidence 3567788889999999999999999999999999998888764321 1111 11111111111 11111 1457999
Q ss_pred CCcEEEEcccccc
Q 016390 332 VGQTFTIEPMINA 344 (390)
Q Consensus 332 ~GmvftIEP~i~~ 344 (390)
.|..+.|..-+|.
T Consensus 199 dGDIvNiDVtvY~ 211 (369)
T KOG2738|consen 199 DGDIVNIDVTVYL 211 (369)
T ss_pred CCCEEeEEEEEEe
Confidence 9999999998876
No 69
>PRK10879 proline aminopeptidase P II; Provisional
Probab=94.32 E-value=0.53 Score=48.53 Aligned_cols=101 Identities=24% Similarity=0.345 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----HcCCCCCC-------CCC-CcCCcee----eeCCCCccc
Q 016390 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI----TAGGYPSP-------LNY-HFFPKSC----CTSVNEVIC 214 (390)
Q Consensus 151 mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~----~~g~~ps~-------l~~-~~fp~~v----~~g~n~~~~ 214 (390)
.|++.+++.++++++++.++||++-.+|...+.+.+. +.|.-+.. ..+ ..|+..+ ...+.+...
T Consensus 284 q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iGldvHd~~~ 363 (438)
T PRK10879 284 QREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDVHDVGV 363 (438)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhCCcCCCHHHHHHhccCccccCCCCccccCcCcCcCCC
Confidence 4677788889999999999999999999888775543 33432100 000 0123222 221222111
Q ss_pred cCCCCCCcCCCCCeEEEeeeeeeC----------cEEeeeeeEEEec
Q 016390 215 HGIPDSRKLEDGDIVNIDVTVYYK----------GVHGDLNETYFVG 251 (390)
Q Consensus 215 Hg~p~~r~L~~GDiV~iD~g~~~~----------GY~~D~~RT~~vG 251 (390)
....++++|++|-++.|..|.+.. |+..-+..|++|.
T Consensus 364 ~~~~~~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~GiRiED~VlVT 410 (438)
T PRK10879 364 YGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDIVIT 410 (438)
T ss_pred cCCCCCCcCCCCCEEEECCEEEECCCcCcccccCccEEEeccEEEEC
Confidence 111135799999999999999863 4666788899985
No 70
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=94.22 E-value=0.44 Score=49.37 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHc----CCceeccceeeecCCccccCCCCCCCCCC-CCcccc
Q 016390 256 ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS----GFSVVKSYCGHGIGELFHCAPNIPHYSRN-KAVGVM 330 (390)
Q Consensus 256 ~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~----G~~~~~~~~GHgIG~~~he~P~i~~~~~~-~~~~~l 330 (390)
.+++..+.+..+++.+++.++||++..||...+++.+++. |......| .-++++. -..+||..+ ++..+|
T Consensus 160 ~~R~AaeIa~~vl~~~~~~IkpG~se~EIa~~ie~~ir~~~~~~G~~~g~aF-Pt~vS~N----~~aaH~tP~~gd~~vL 234 (470)
T PTZ00053 160 DLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADGLKCGWAF-PTGCSLN----HCAAHYTPNTGDKTVL 234 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcCCcccCCC-CceeecC----ccccCCCCCCCCCcEe
Confidence 3566777778888888999999999999999887765543 43211111 1123321 123444322 345799
Q ss_pred cCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEe
Q 016390 331 KVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376 (390)
Q Consensus 331 ~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVT 376 (390)
+.|.++.|+-+... +|. .+-...||.+.
T Consensus 235 k~GDvVkID~G~~v-----------------dGY-iaD~ArTv~vg 262 (470)
T PTZ00053 235 TYDDVCKLDFGTHV-----------------NGR-IIDCAFTVAFN 262 (470)
T ss_pred cCCCeEEEEEeEEE-----------------CCE-EEeEEEEEEeC
Confidence 99999999986554 343 45677888774
No 71
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=93.22 E-value=0.05 Score=34.39 Aligned_cols=29 Identities=38% Similarity=1.151 Sum_probs=22.1
Q ss_pred cccccccCCccccccchhhccCCCCCCCcccChhHhh
Q 016390 12 SLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFK 48 (390)
Q Consensus 12 ~~~c~~c~~~~~~~c~~c~~~~~~~~~~~~c~q~cf~ 48 (390)
...|..|++++.-.||.|.. .+||-+|+|
T Consensus 2 ~~~C~vC~~~~kY~Cp~C~~--------~~CSl~C~k 30 (30)
T PF04438_consen 2 RKLCSVCGNPAKYRCPRCGA--------RYCSLACYK 30 (30)
T ss_dssp -EEETSSSSEESEE-TTT----------EESSHHHHH
T ss_pred cCCCccCcCCCEEECCCcCC--------ceeCcEeEC
Confidence 35688899988899999874 599999997
No 72
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=91.98 E-value=3 Score=38.87 Aligned_cols=96 Identities=17% Similarity=0.083 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceee--eCCCCc--cccCCCCCCcCCCC
Q 016390 152 RETCRIAREVLDAAARMI-RPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNEV--ICHGIPDSRKLEDG 226 (390)
Q Consensus 152 R~A~~ia~~~l~~a~~~i-~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~--~g~n~~--~~Hg~p~~r~L~~G 226 (390)
|++..++.++..++.+.+ +||++-.+|++.+.+.+.+.|.+- ....++ .|. ....+. +.+...++++|++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~g~~~--~h~~GH--gIG~~l~~hE~P~i~~~~~~~~~L~~G 189 (224)
T cd01085 114 KRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDY--GHGTGH--GVGSFLNVHEGPQSISPAPNNVPLKAG 189 (224)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCC--CCCCCC--CCCCCCcCCCCCCcCCcCCCCCCcCCC
Confidence 445555566667777766 599999999999999988877531 000111 222 122221 11011245789999
Q ss_pred CeEEEeeeeeeC-cEEeeeeeEEEec
Q 016390 227 DIVNIDVTVYYK-GVHGDLNETYFVG 251 (390)
Q Consensus 227 DiV~iD~g~~~~-GY~~D~~RT~~vG 251 (390)
.++.|.-+.+.. .+..-+..|++|.
T Consensus 190 mvftiEP~iy~~g~~gvried~v~Vt 215 (224)
T cd01085 190 MILSNEPGYYKEGKYGIRIENLVLVV 215 (224)
T ss_pred CEEEECCEeEeCCCeEEEeeEEEEEe
Confidence 999999999864 4556688888885
No 73
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=90.88 E-value=0.19 Score=36.95 Aligned_cols=34 Identities=24% Similarity=0.634 Sum_probs=26.0
Q ss_pred cccchhhccCCCCCCCcccChhHhhhhhHHHHHhhh
Q 016390 24 LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (390)
Q Consensus 24 ~~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~ 59 (390)
..||.|-+. |+. ..-|||++|-+..++.+|+..+
T Consensus 4 kHC~~CG~~-Ip~-~~~fCS~~C~~~~~k~qk~~~~ 37 (59)
T PF09889_consen 4 KHCPVCGKP-IPP-DESFCSPKCREEYRKRQKRMRK 37 (59)
T ss_pred CcCCcCCCc-CCc-chhhhCHHHHHHHHHHHHHHHH
Confidence 457777643 432 5689999999999999998875
No 74
>PRK13607 proline dipeptidase; Provisional
Probab=90.68 E-value=2.6 Score=43.53 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH----HHcCCCCC-------CCCC--CcCCce----eeeCCCCccc
Q 016390 152 RETCRIAREVLDAAARMIRPGVTTDEIDRVVHEAT----ITAGGYPS-------PLNY--HFFPKS----CCTSVNEVIC 214 (390)
Q Consensus 152 R~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~----~~~g~~ps-------~l~~--~~fp~~----v~~g~n~~~~ 214 (390)
++..+++.++++++++.++||++-.||+..+++.+ .+.|.... .-++ ..||.. +...+.+.-.
T Consensus 271 ~~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iGldvHd~~~ 350 (443)
T PRK13607 271 AALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAG 350 (443)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhCCCceEecCCCccCccCcccccCCC
Confidence 46788899999999999999999999998887555 44443310 0001 113332 2222222210
Q ss_pred c----------------CCCCCCcCCCCCeEEEeeeeeeCc
Q 016390 215 H----------------GIPDSRKLEDGDIVNIDVTVYYKG 239 (390)
Q Consensus 215 H----------------g~p~~r~L~~GDiV~iD~g~~~~G 239 (390)
. ..-+.++|++|.++.|.-|.|+.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~l~~~~~L~~GmV~TvEPGiY~~~ 391 (443)
T PRK13607 351 FMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLTIEPGLYFID 391 (443)
T ss_pred cccccccccccccccccccccCCcCCCCcEEEECCeeeeCh
Confidence 0 111357999999999999999865
No 75
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=85.49 E-value=0.57 Score=34.76 Aligned_cols=29 Identities=21% Similarity=0.482 Sum_probs=20.2
Q ss_pred cccccchhhccCC---CCCCCcccChhHhhhh
Q 016390 22 AHLQCPKCMELKL---PREGAAFCTQDCFKAS 50 (390)
Q Consensus 22 ~~~~c~~c~~~~~---~~~~~~~c~q~cf~~~ 50 (390)
.+..||+|.|.-. ......|||+-|-.-+
T Consensus 5 ~~v~CP~C~k~~~w~~~~~~rPFCS~RCk~ID 36 (62)
T PRK00418 5 ITVNCPTCGKPVEWGEISPFRPFCSKRCQLID 36 (62)
T ss_pred ccccCCCCCCcccccCCCCcCCcccHHHHhhh
Confidence 4578999988743 1124579999998655
No 76
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=85.23 E-value=2.3 Score=36.63 Aligned_cols=29 Identities=38% Similarity=1.075 Sum_probs=22.3
Q ss_pred cccccccCC-ccccccchhhccCCCCCCCcccChhHhh
Q 016390 12 SLSCVRCGK-PAHLQCPKCMELKLPREGAAFCTQDCFK 48 (390)
Q Consensus 12 ~~~c~~c~~-~~~~~c~~c~~~~~~~~~~~~c~q~cf~ 48 (390)
..+|.-|.+ +.+-+||.|. ..|||-.|||
T Consensus 5 t~tC~ic~e~~~KYKCpkC~--------vPYCSl~CfK 34 (157)
T KOG2857|consen 5 TTTCVICLESEIKYKCPKCS--------VPYCSLPCFK 34 (157)
T ss_pred eeeehhhhcchhhccCCCCC--------Cccccchhhh
Confidence 345766887 4479999997 3599999984
No 77
>PRK01343 zinc-binding protein; Provisional
Probab=82.09 E-value=0.83 Score=33.29 Aligned_cols=26 Identities=27% Similarity=0.703 Sum_probs=19.0
Q ss_pred cccchhhccCCCCCCCcccChhHhhhh
Q 016390 24 LQCPKCMELKLPREGAAFCTQDCFKAS 50 (390)
Q Consensus 24 ~~c~~c~~~~~~~~~~~~c~q~cf~~~ 50 (390)
..||+|.|.-.. ....|||+-|-.-+
T Consensus 10 ~~CP~C~k~~~~-~~rPFCS~RC~~iD 35 (57)
T PRK01343 10 RPCPECGKPSTR-EAYPFCSERCRDID 35 (57)
T ss_pred CcCCCCCCcCcC-CCCcccCHHHhhhh
Confidence 567777776553 35689999998655
No 78
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=81.46 E-value=6.6 Score=39.12 Aligned_cols=93 Identities=23% Similarity=0.302 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHH--------HHH-----cCCce-----eccceeeecCCccccCCC
Q 016390 256 ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH--------ATM-----SGFSV-----VKSYCGHGIGELFHCAPN 317 (390)
Q Consensus 256 ~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~--------~~~-----~G~~~-----~~~~~GHgIG~~~he~P~ 317 (390)
..+..-+.+..++...++.|+||++..||-..-... +++ .|... +.+..+ |-.|.
T Consensus 23 KYk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT~Isvnncv~-------h~sPl 95 (398)
T KOG2776|consen 23 KYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPTSISVNNCVC-------HFSPL 95 (398)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccceecccceee-------ccCcC
Confidence 345556677788888899999999999986554333 332 12221 111112 22333
Q ss_pred CCCCCCCCCcccccCCcEEEEccccccCCccccccCCCceEEeeCCeeeEEEEEEEEEeCC
Q 016390 318 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAH 378 (390)
Q Consensus 318 i~~~~~~~~~~~l~~GmvftIEP~i~~g~~~~~~~~d~wt~~t~~g~~~~~~EdtvlVTe~ 378 (390)
. .+.+.+|++|.++-|.-++.. || +.+-+.||++|++.
T Consensus 96 k-----sd~~~~Lk~GDvVKIdLG~Hi-----------------DG-fiA~vaHT~VV~~~ 133 (398)
T KOG2776|consen 96 K-----SDADYTLKEGDVVKIDLGVHI-----------------DG-FIALVAHTIVVGPA 133 (398)
T ss_pred C-----CCCcccccCCCEEEEEeeeee-----------------cc-ceeeeeeeEEeccC
Confidence 2 345789999999999987765 44 45678999999864
No 79
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=79.81 E-value=6.8 Score=42.59 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCC----C-ccccCCCCCCcCCC
Q 016390 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVN----E-VICHGIPDSRKLED 225 (390)
Q Consensus 151 mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n----~-~~~Hg~p~~r~L~~ 225 (390)
|.++...--.+.+++..+++||..-.+|...+...+.+.+-.-. ..|++.+.+|.. + .+.-+.-++++|+.
T Consensus 259 mq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~~Pel~----~~~~k~lG~~iGlEFREssl~inaKnd~~lk~ 334 (960)
T KOG1189|consen 259 MQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKNKPELV----PNFTKNLGFGIGLEFRESSLVINAKNDRVLKK 334 (960)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCcchh----hhhhhhcccccceeeecccccccccchhhhcc
Confidence 56777777778888899999999999999999999988764332 135555444322 1 11222235699999
Q ss_pred CCeEEEeeeee-------eCcEEeeeeeEEEecC
Q 016390 226 GDIVNIDVTVY-------YKGVHGDLNETYFVGN 252 (390)
Q Consensus 226 GDiV~iD~g~~-------~~GY~~D~~RT~~vG~ 252 (390)
|.+++|.+|.. .+-|.--++-|+.||+
T Consensus 335 gmvFni~lGf~nl~n~~~~~~yaL~l~DTvlv~e 368 (960)
T KOG1189|consen 335 GMVFNISLGFSNLTNPESKNSYALLLSDTVLVGE 368 (960)
T ss_pred CcEEEEeeccccccCcccccchhhhccceeeecC
Confidence 99999999875 3457777899999984
No 80
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=79.13 E-value=2.4 Score=30.71 Aligned_cols=38 Identities=24% Similarity=0.859 Sum_probs=29.4
Q ss_pred ccccCC----ccccccchhhccCCCCCCCcccChhHhhhhhHHHHHhhh
Q 016390 15 CVRCGK----PAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (390)
Q Consensus 15 c~~c~~----~~~~~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~ 59 (390)
|.-|.+ ...+.||.| ||| ++||++-.+.+...|+.+..
T Consensus 2 Cpv~~~~~~~~v~~~Cp~c---Gip----thcS~ehw~~D~e~H~~~c~ 43 (55)
T PF13824_consen 2 CPVCKKDLPAHVNFECPDC---GIP----THCSEEHWEDDYEEHRQLCE 43 (55)
T ss_pred CCCCccccccccCCcCCCC---CCc----CccCHHHHHHhHHHHHHHHH
Confidence 555665 555888877 676 89999999999899988764
No 81
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.78 E-value=1.5 Score=32.56 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=10.0
Q ss_pred CCcccChhHhhhh
Q 016390 38 GAAFCTQDCFKAS 50 (390)
Q Consensus 38 ~~~~c~q~cf~~~ 50 (390)
...|||+-|.-=+
T Consensus 25 frPFCSkRCklID 37 (65)
T COG3024 25 FRPFCSKRCKLID 37 (65)
T ss_pred cCcchhHhhhhcc
Confidence 5679999997544
No 82
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=76.76 E-value=0.93 Score=33.10 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=13.3
Q ss_pred cccchhhccCCC---CCCCcccChhHhhhh
Q 016390 24 LQCPKCMELKLP---REGAAFCTQDCFKAS 50 (390)
Q Consensus 24 ~~c~~c~~~~~~---~~~~~~c~q~cf~~~ 50 (390)
..||+|.|.-.. -....|||+-|-.-+
T Consensus 3 v~CP~C~k~~~~~~~n~~rPFCS~RCk~iD 32 (57)
T PF03884_consen 3 VKCPICGKPVEWSPENPFRPFCSERCKLID 32 (57)
T ss_dssp EE-TTT--EEE-SSSSS--SSSSHHHHHHH
T ss_pred ccCCCCCCeecccCCCCcCCcccHhhcccC
Confidence 356666655332 024569999997544
No 83
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=76.10 E-value=0.93 Score=47.08 Aligned_cols=37 Identities=24% Similarity=0.854 Sum_probs=28.9
Q ss_pred ccccCCccccccchhhccCCCCCCCcccChhHhhhhhHHHHHhhhh
Q 016390 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLK 60 (390)
Q Consensus 15 c~~c~~~~~~~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h~~ 60 (390)
|.+|.++|-+-| |- ..-|||-+|+.+.|++|++.++.
T Consensus 530 C~nC~~EAiy~C--CW-------NTSYCsveCQQ~HW~~H~ksCrr 566 (588)
T KOG3612|consen 530 CYNCLDEAIYHC--CW-------NTSYCSVECQQGHWPEHRKSCRR 566 (588)
T ss_pred HHhhhHHHHHHh--hc-------cccccCcchhhccchhHhhhhcc
Confidence 777777777555 22 34589999999999999998864
No 84
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=68.71 E-value=1.5 Score=30.32 Aligned_cols=37 Identities=27% Similarity=0.539 Sum_probs=26.4
Q ss_pred cccccCCccc---cccchhhccCCCCCCCcccChhHhhhhhHHHHHhh
Q 016390 14 SCVRCGKPAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (390)
Q Consensus 14 ~c~~c~~~~~---~~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h 58 (390)
.|.+|+++.. .+|-.|.. |--.++||......|+.-|
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d--------~dLC~~Cf~~~~~~H~~~H 41 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCED--------FDLCSSCYAKGKKGHPPDH 41 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCC--------CcCHHHHHCcCcCCCCCCC
Confidence 5888888654 67888864 3447899998875665555
No 85
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=68.58 E-value=18 Score=27.83 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=33.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCC-ccccCCCCCCcCCCCCeEEE
Q 016390 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE-VICHGIPDSRKLEDGDIVNI 231 (390)
Q Consensus 169 i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~-~~~Hg~p~~r~L~~GDiV~i 231 (390)
++.|.|-.+++..+|..+.++=.+ ....|.+. ....-.+-+.+|++||+|.|
T Consensus 21 L~~GaTV~D~a~~iH~di~~~f~~-----------A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI 73 (75)
T cd01666 21 LRRGSTVEDVCNKIHKDLVKQFKY-----------ALVWGSSVKHSPQRVGLDHVLEDEDVVQI 73 (75)
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCe-----------eEEeccCCcCCCeECCCCCEecCCCEEEE
Confidence 466999999999999877664222 12222221 11233456789999999987
No 86
>PF02069 Metallothio_Pro: Prokaryotic metallothionein; InterPro: IPR000518 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. An empirical classification into three classes was proposed by Kojima [], with class III MTs including atypical polypeptides composed of gamma-glutamylcysteinyl units. Class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. The MT superfamily is subdivided into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects [], e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Family 14 consists of prokaryota MTs. Its members are recognised by the sequence pattern K-C-A-C-x(2)-C-L-C.The taxonomic range of the members extends to cyanobacteria. Known characteristics are: 53 to 56 AAs; 9 conserved Cys; one conserved tyrosine residue; one conserved histidine residue; contain other unusual residues. ; GO: 0046872 metal ion binding; PDB: 1JJD_A.
Probab=68.08 E-value=2.4 Score=30.33 Aligned_cols=27 Identities=26% Similarity=0.861 Sum_probs=17.2
Q ss_pred cccchhh-----ccCCCCCCCcccChhHhhhh
Q 016390 24 LQCPKCM-----ELKLPREGAAFCTQDCFKAS 50 (390)
Q Consensus 24 ~~c~~c~-----~~~~~~~~~~~c~q~cf~~~ 50 (390)
-.||.|. +..|.+++-|||||.|-+..
T Consensus 8 CaC~~C~C~V~~~~Ai~~dGk~YCS~aCA~gH 39 (52)
T PF02069_consen 8 CACPSCSCVVSEEEAIQKDGKYYCSEACANGH 39 (52)
T ss_dssp -SSTT----B-TTTSEESSS-EESSHHHHHTS
T ss_pred ecCCCCEeEECchHhHHhCCEeeecHHHhccC
Confidence 3467775 45666678899999998653
No 87
>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.
Probab=59.06 E-value=6.4 Score=26.34 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=16.5
Q ss_pred ccccccCCccccccc-hhhccCCCCCCCcccChhHhhh
Q 016390 13 LSCVRCGKPAHLQCP-KCMELKLPREGAAFCTQDCFKA 49 (390)
Q Consensus 13 ~~c~~c~~~~~~~c~-~c~~~~~~~~~~~~c~q~cf~~ 49 (390)
..|..|++.....=- .-...+- ..-.|||+.|...
T Consensus 7 ~~C~~C~~~~~~~~~~~~~~~~g--~~~~FCS~~C~~~ 42 (43)
T PF06467_consen 7 KTCSYCKKYIPNKPTMIEVQYDG--KMKQFCSQSCLSS 42 (43)
T ss_dssp EE-TTT--EEECCC----EE-TT--TTSCCSSHHHHHH
T ss_pred CcCcccCCcccCCCccccccccC--cccChhCHHHHhh
Confidence 457778775532210 1222222 2468999999864
No 88
>PRK04023 DNA polymerase II large subunit; Validated
Probab=58.86 E-value=5.6 Score=44.63 Aligned_cols=38 Identities=26% Similarity=0.522 Sum_probs=25.7
Q ss_pred CCCccccccccccccCCccc-cccchhhccCCCCCCCcccCh
Q 016390 4 GSDAAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQ 44 (390)
Q Consensus 4 ~~~~~~~~~~~c~~c~~~~~-~~c~~c~~~~~~~~~~~~c~q 44 (390)
|.-..+...+.|..||+.+. .+||.|-+.-- ..+||..
T Consensus 618 g~~eVEVg~RfCpsCG~~t~~frCP~CG~~Te---~i~fCP~ 656 (1121)
T PRK04023 618 GTIEVEIGRRKCPSCGKETFYRRCPFCGTHTE---PVYRCPR 656 (1121)
T ss_pred CceeecccCccCCCCCCcCCcccCCCCCCCCC---cceeCcc
Confidence 44455666788999998764 88888877622 3566654
No 89
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=58.39 E-value=54 Score=32.19 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHH----HHHcCCceeccceeeecCCcc-ccCCCCCCCC-CCCCcc
Q 016390 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH----ATMSGFSVVKSYCGHGIGELF-HCAPNIPHYS-RNKAVG 328 (390)
Q Consensus 255 ~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~----~~~~G~~~~~~~~GHgIG~~~-he~P~i~~~~-~~~~~~ 328 (390)
.+.++..++-+.+...+...+|||++.-||-+.++.- +.+.|...- .|...|..+ |++ .||. +.++..
T Consensus 86 ~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~gl~aG---i~FPtG~SlN~cA---AHyTpNaGd~t 159 (397)
T KOG2775|consen 86 QDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENGLNAG---IGFPTGCSLNHCA---AHYTPNAGDKT 159 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhcccccc---ccCCCcccccchh---hhcCCCCCCce
Confidence 4566777777888888889999999999998877654 445555422 233333222 222 2222 245668
Q ss_pred cccCCcEEEEccccc
Q 016390 329 VMKVGQTFTIEPMIN 343 (390)
Q Consensus 329 ~l~~GmvftIEP~i~ 343 (390)
+|+...|.-|.-+..
T Consensus 160 VLqydDV~KiDfGth 174 (397)
T KOG2775|consen 160 VLKYDDVMKIDFGTH 174 (397)
T ss_pred eeeecceEEEecccc
Confidence 999999988886443
No 90
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.84 E-value=2.4 Score=35.82 Aligned_cols=21 Identities=33% Similarity=0.877 Sum_probs=17.7
Q ss_pred ccccccccCCccccccchhhc
Q 016390 11 TSLSCVRCGKPAHLQCPKCME 31 (390)
Q Consensus 11 ~~~~c~~c~~~~~~~c~~c~~ 31 (390)
+...|+-||..+-+|||.|..
T Consensus 27 ~eafcskcgeati~qcp~csa 47 (160)
T COG4306 27 MEAFCSKCGEATITQCPICSA 47 (160)
T ss_pred HHHHHhhhchHHHhcCCccCC
Confidence 346798899999999999975
No 91
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=50.15 E-value=6.2 Score=27.72 Aligned_cols=38 Identities=32% Similarity=0.599 Sum_probs=26.6
Q ss_pred cccccCC-ccc---cccchhhccCCCCCCCcccChhHhhhhhHHHHHhh
Q 016390 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (390)
Q Consensus 14 ~c~~c~~-~~~---~~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h 58 (390)
.|.+|++ +.. .+|..|..- .|=-.|+||...= .||.-|
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~------d~DlC~~C~~~~~-~H~~~H 43 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDG------DFDLCQDCVVKGE-SHQEDH 43 (48)
T ss_pred CCCCCCCCccccceEECCCCCCC------CCccCHHHHhCcC-CCCCCC
Confidence 5888988 554 788888742 3445789998764 666666
No 92
>COG3350 Uncharacterized conserved protein [Function unknown]
Probab=49.03 E-value=7.1 Score=27.97 Aligned_cols=11 Identities=27% Similarity=0.878 Sum_probs=8.8
Q ss_pred CcccChhHhhh
Q 016390 39 AAFCTQDCFKA 49 (390)
Q Consensus 39 ~~~c~q~cf~~ 49 (390)
=|||||+|-..
T Consensus 28 YYFcse~~~~~ 38 (53)
T COG3350 28 YYFCSEECKEK 38 (53)
T ss_pred EEEeCHHHHHH
Confidence 48999999644
No 93
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=46.63 E-value=5.7 Score=27.84 Aligned_cols=29 Identities=28% Similarity=0.721 Sum_probs=20.8
Q ss_pred cccccCCccc----cccchhhccCCCCCCCcccChhHhhhh
Q 016390 14 SCVRCGKPAH----LQCPKCMELKLPREGAAFCTQDCFKAS 50 (390)
Q Consensus 14 ~c~~c~~~~~----~~c~~c~~~~~~~~~~~~c~q~cf~~~ 50 (390)
.|.+|.++.. .+|..|.. |-..++||...
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d--------~dLC~~Cf~~g 34 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPD--------FDLCLECFSAG 34 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCC--------cchhHHhhhCc
Confidence 4888887553 77888864 44578999765
No 94
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=45.24 E-value=1e+02 Score=28.05 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHHcCCceeccceeeecCCccccCCCCCCCCCCCCcccccCC
Q 016390 254 DEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVG 333 (390)
Q Consensus 254 ~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~~G~~~~~~~~GHgIG~~~he~P~i~~~~~~~~~~~l~~G 333 (390)
+++++..-..+.+-+.+.++..-|..+..+.-+.+++.+.+..-. +|.-|-+|-. -+|.. +++ +.|
T Consensus 114 ~~e~kaar~~a~~YmaAl~r~F~Ptls~eQs~~kl~~lL~~gk~~---~yy~q~~GAi----RYVva--d~g-----ekg 179 (200)
T PF07305_consen 114 GPEQKAARALAIEYMAALMRQFEPTLSPEQSQEKLQKLLTKGKGS---RYYSQTEGAI----RYVVA--DNG-----EKG 179 (200)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHcCCCC---cceeeccCce----EEEEe--cCC-----Cce
Confidence 467777777788888888899999999999999999998875432 3455666631 12221 122 679
Q ss_pred cEEEEccc
Q 016390 334 QTFTIEPM 341 (390)
Q Consensus 334 mvftIEP~ 341 (390)
++|+|||.
T Consensus 180 lTFAVEPI 187 (200)
T PF07305_consen 180 LTFAVEPI 187 (200)
T ss_pred eEEEeeee
Confidence 99999994
No 95
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=44.33 E-value=8.4 Score=26.30 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=23.8
Q ss_pred cccccCCccc---cccchhhccCCCCCCCcccChhHhhhhhHHHHHhh
Q 016390 14 SCVRCGKPAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (390)
Q Consensus 14 ~c~~c~~~~~---~~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h 58 (390)
.|.+|+++.. .+|..|.. |.-.++||... .| .-|
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d--------~dLC~~C~~~~--~H-~~H 38 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPD--------YDLCESCEAKG--VH-PEH 38 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCC--------ccchHHhhCcC--CC-CCC
Confidence 5888988664 67777763 55678999876 55 444
No 96
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=44.18 E-value=12 Score=22.57 Aligned_cols=18 Identities=33% Similarity=0.994 Sum_probs=9.0
Q ss_pred cccccccCCccc---cccchh
Q 016390 12 SLSCVRCGKPAH---LQCPKC 29 (390)
Q Consensus 12 ~~~c~~c~~~~~---~~c~~c 29 (390)
...|..||++.. .-||.|
T Consensus 2 ~~~Cp~Cg~~~~~~~~fC~~C 22 (26)
T PF13248_consen 2 EMFCPNCGAEIDPDAKFCPNC 22 (26)
T ss_pred cCCCcccCCcCCcccccChhh
Confidence 345666665432 445555
No 97
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=43.97 E-value=77 Score=34.20 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCC--CC---ccccCCCCCCcCCCCCeEEEe
Q 016390 158 AREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSV--NE---VICHGIPDSRKLEDGDIVNID 232 (390)
Q Consensus 158 a~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~--n~---~~~Hg~p~~r~L~~GDiV~iD 232 (390)
.-.+.+.....++||.+-.+|...+...+.+.|-.-.| +|-..+..+. .. ..+-..-++|+||.|++++|.
T Consensus 307 l~~lQk~i~~~~rpG~~~g~iY~~~~~yi~~~~pel~p----nF~~nvG~~igiefR~s~~~~nvkn~r~lq~g~~fnis 382 (1001)
T COG5406 307 LYMLQKYILGLVRPGTDSGIIYSEAEKYISSNGPELGP----NFIYNVGLMIGIEFRSSQKPFNVKNGRVLQAGCIFNIS 382 (1001)
T ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHHHhcCCccCc----hHhhhhhhhccccccccccceeccCCceeccccEEEEe
Confidence 33344556668999999999999999999988764332 2333333222 11 112233456999999999999
Q ss_pred eee
Q 016390 233 VTV 235 (390)
Q Consensus 233 ~g~ 235 (390)
+|-
T Consensus 383 ~gf 385 (1001)
T COG5406 383 LGF 385 (1001)
T ss_pred ecc
Confidence 853
No 98
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=43.80 E-value=34 Score=26.59 Aligned_cols=52 Identities=27% Similarity=0.284 Sum_probs=38.1
Q ss_pred CCcCCCCCeEEEeeeeee-CcEEeeee------eEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 016390 220 SRKLEDGDIVNIDVTVYY-KGVHGDLN------ETYFVGNADEASRQLVQCTYECLEKAISIVKPGVR 280 (390)
Q Consensus 220 ~r~L~~GDiV~iD~g~~~-~GY~~D~~------RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~~ 280 (390)
++..++||.|.|++.++. +|-.-|-+ .+|.+|.- ....+++.++..+++|-.
T Consensus 2 ~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~---------~~i~g~e~al~~m~~Ge~ 60 (94)
T PF00254_consen 2 PRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSG---------QVIPGLEEALIGMKVGEK 60 (94)
T ss_dssp SSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSS---------SSSHHHHHHHTTSBTTEE
T ss_pred CccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccC---------ccccchhhhcccccCCCE
Confidence 356789999999999987 77777766 57777741 134467788888888743
No 99
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=43.75 E-value=12 Score=27.45 Aligned_cols=22 Identities=32% Similarity=0.791 Sum_probs=11.8
Q ss_pred cccccCCccccccchhhccCCC
Q 016390 14 SCVRCGKPAHLQCPKCMELKLP 35 (390)
Q Consensus 14 ~c~~c~~~~~~~c~~c~~~~~~ 35 (390)
.|.+||+..--+|..|-|++.+
T Consensus 27 ~CPnCG~~~I~RC~~CRk~~~~ 48 (59)
T PRK14890 27 LCPNCGEVIIYRCEKCRKQSNP 48 (59)
T ss_pred eCCCCCCeeEeechhHHhcCCc
Confidence 4555555444556666665553
No 100
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=43.28 E-value=13 Score=25.47 Aligned_cols=17 Identities=18% Similarity=0.692 Sum_probs=13.6
Q ss_pred CCCcccChhHhhhhhHH
Q 016390 37 EGAAFCTQDCFKASWTS 53 (390)
Q Consensus 37 ~~~~~c~q~cf~~~w~~ 53 (390)
+.+-|||++|-..++..
T Consensus 21 ~~~lYCSe~Cr~~D~~~ 37 (43)
T PF12855_consen 21 DGSLYCSEECRLKDQEK 37 (43)
T ss_pred CCccccCHHHHhHhhhc
Confidence 47899999999887543
No 101
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=43.25 E-value=9.6 Score=26.93 Aligned_cols=22 Identities=32% Similarity=0.991 Sum_probs=17.0
Q ss_pred ccccccccccCCccc-------cccchhh
Q 016390 9 ETTSLSCVRCGKPAH-------LQCPKCM 30 (390)
Q Consensus 9 ~~~~~~c~~c~~~~~-------~~c~~c~ 30 (390)
+++..+|..||+.-. .+||-|-
T Consensus 3 ~~~~Y~C~~Cg~~~~~~~~~~~irCp~Cg 31 (49)
T COG1996 3 AMMEYKCARCGREVELDQETRGIRCPYCG 31 (49)
T ss_pred ceEEEEhhhcCCeeehhhccCceeCCCCC
Confidence 466788999998543 7899885
No 102
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=43.05 E-value=7.9 Score=27.21 Aligned_cols=37 Identities=27% Similarity=0.643 Sum_probs=24.0
Q ss_pred cccccCC-ccc---cccchhhccCCCCCCCcccChhHhhhhh--HHHHHhh
Q 016390 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASW--TSHKSVH 58 (390)
Q Consensus 14 ~c~~c~~-~~~---~~c~~c~~~~~~~~~~~~c~q~cf~~~w--~~hk~~h 58 (390)
.|.+|.+ +.. .+|-.|.. |--.++||...= ..|+.-|
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d--------ydLC~~Cf~~~~~~~~H~~~H 44 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRD--------YSLCLGCYTKGRETKRHNSLH 44 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCC--------cCchHHHHhCCCcCCCCCCCC
Confidence 5888988 554 77888854 445789997542 3444444
No 103
>KOG2858 consensus Uncharacterized conserved protein [General function prediction only]
Probab=42.98 E-value=10 Score=37.69 Aligned_cols=35 Identities=31% Similarity=0.741 Sum_probs=27.4
Q ss_pred ccccccccccccCCccc-cccchhhccCCCCCCCcccChhHhhh
Q 016390 7 AAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQDCFKA 49 (390)
Q Consensus 7 ~~~~~~~~c~~c~~~~~-~~c~~c~~~~~~~~~~~~c~q~cf~~ 49 (390)
-.+.+.-.|..|+++.. -.||.|+ +-+|+=+|-|.
T Consensus 12 ~~~~~~vlCgVClknE~KYkCPRCl--------~rtCsLeCskk 47 (390)
T KOG2858|consen 12 GGGLHSVLCGVCLKNEPKYKCPRCL--------ARTCSLECSKK 47 (390)
T ss_pred ccccchhhhhhcccCcccccCcchh--------hhheecccccc
Confidence 34556677988999885 8999998 45899999853
No 104
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=42.26 E-value=12 Score=27.47 Aligned_cols=21 Identities=38% Similarity=0.956 Sum_probs=10.0
Q ss_pred ccccCCccccccchhhccCCC
Q 016390 15 CVRCGKPAHLQCPKCMELKLP 35 (390)
Q Consensus 15 c~~c~~~~~~~c~~c~~~~~~ 35 (390)
|.+||+..--+|-+|-|+|.+
T Consensus 30 CPnCGe~~I~Rc~~CRk~g~~ 50 (61)
T COG2888 30 CPNCGEVEIYRCAKCRKLGNP 50 (61)
T ss_pred CCCCCceeeehhhhHHHcCCc
Confidence 444444444445555555543
No 105
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=42.04 E-value=12 Score=30.97 Aligned_cols=22 Identities=32% Similarity=0.774 Sum_probs=15.9
Q ss_pred cccccccCC-----ccc-cccchhhccC
Q 016390 12 SLSCVRCGK-----PAH-LQCPKCMELK 33 (390)
Q Consensus 12 ~~~c~~c~~-----~~~-~~c~~c~~~~ 33 (390)
+|+|.+||+ +.. ..||.|-..-
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCCCCcc
Confidence 689999997 222 6799887653
No 106
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=40.57 E-value=11 Score=23.80 Aligned_cols=20 Identities=40% Similarity=1.017 Sum_probs=11.7
Q ss_pred cccccccCCccc-------cccchhhc
Q 016390 12 SLSCVRCGKPAH-------LQCPKCME 31 (390)
Q Consensus 12 ~~~c~~c~~~~~-------~~c~~c~~ 31 (390)
.+-|..||.++. ++||.|-.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 467888987653 88998854
No 107
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=40.44 E-value=55 Score=21.06 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 016390 154 TCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI 187 (390)
Q Consensus 154 A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~ 187 (390)
.|.+...++..+...++...|+.+|...+++.+.
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~ 36 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTEEEIKKALEKACN 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHh
Confidence 4677888899999999999999999999998774
No 108
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=39.18 E-value=13 Score=27.16 Aligned_cols=23 Identities=22% Similarity=0.625 Sum_probs=17.4
Q ss_pred cccchhhccCCCCCCCcccChhHhh
Q 016390 24 LQCPKCMELKLPREGAAFCTQDCFK 48 (390)
Q Consensus 24 ~~c~~c~~~~~~~~~~~~c~q~cf~ 48 (390)
..|+.|-+.--+ +--|||.+|..
T Consensus 9 ~HC~VCg~aIp~--de~~CSe~C~e 31 (64)
T COG4068 9 RHCVVCGKAIPP--DEQVCSEECGE 31 (64)
T ss_pred ccccccCCcCCC--ccchHHHHHHH
Confidence 568888875333 67899999984
No 109
>PF12773 DZR: Double zinc ribbon
Probab=39.15 E-value=19 Score=24.88 Aligned_cols=31 Identities=35% Similarity=0.840 Sum_probs=22.6
Q ss_pred ccccccccCCccc------cccchhhccCCCCCCCcccC
Q 016390 11 TSLSCVRCGKPAH------LQCPKCMELKLPREGAAFCT 43 (390)
Q Consensus 11 ~~~~c~~c~~~~~------~~c~~c~~~~~~~~~~~~c~ 43 (390)
..+.|..||.+.. +.||.|....-+ ...||.
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~--~~~fC~ 47 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAENPP--NAKFCP 47 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCCCcC--CcCccC
Confidence 3577988987554 669999988444 567774
No 110
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=38.71 E-value=57 Score=25.06 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=30.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCCeEEE
Q 016390 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNI 231 (390)
Q Consensus 169 i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDiV~i 231 (390)
++.|.|-.+++..+|..+.+.=.+ .+-.+ ......+..|++||+|.|
T Consensus 28 l~~g~tv~d~a~~IH~d~~~~F~~-----------A~v~~-----~~~vg~d~~l~d~DVv~i 74 (76)
T cd04938 28 VKKGTTVGDVARKIHGDLEKGFIE-----------AVGGR-----RRLEGKDVILGKNDILKF 74 (76)
T ss_pred EcCCCCHHHHHHHHhHHHHhccEE-----------EEEcc-----CEEECCCEEecCCCEEEE
Confidence 456889999999999866653211 11122 122334678999999987
No 111
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=38.12 E-value=15 Score=31.22 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=20.7
Q ss_pred ccccccccCCccccccchh--hccCCCCCCCcccChhHhhhh
Q 016390 11 TSLSCVRCGKPAHLQCPKC--MELKLPREGAAFCTQDCFKAS 50 (390)
Q Consensus 11 ~~~~c~~c~~~~~~~c~~c--~~~~~~~~~~~~c~q~cf~~~ 50 (390)
....|.-||..+---.-+- .+-|. ..+|||..|.|..
T Consensus 3 ~~e~CsFcG~kIyPG~G~~fVR~DGk---vf~FcssKC~k~f 41 (131)
T PRK14891 3 ETRTCDYTGEEIEPGTGTMFVRKDGT---VLHFVDSKCEKNY 41 (131)
T ss_pred ceeeecCcCCcccCCCCcEEEecCCC---EEEEecHHHHHHH
Confidence 3467888988553111111 12222 3699999997543
No 112
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=36.97 E-value=17 Score=22.04 Aligned_cols=17 Identities=35% Similarity=0.995 Sum_probs=11.5
Q ss_pred cccccCCccc---cccchhh
Q 016390 14 SCVRCGKPAH---LQCPKCM 30 (390)
Q Consensus 14 ~c~~c~~~~~---~~c~~c~ 30 (390)
.|..|++... ..||.|-
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG 21 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCG 21 (26)
T ss_pred cCCCCcCCchhhcCcCCCCC
Confidence 5777887654 6677764
No 113
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=36.31 E-value=11 Score=26.60 Aligned_cols=29 Identities=31% Similarity=0.738 Sum_probs=19.8
Q ss_pred cccccCC-ccc---cccchhhccCCCCCCCcccChhHhhhh
Q 016390 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKAS 50 (390)
Q Consensus 14 ~c~~c~~-~~~---~~c~~c~~~~~~~~~~~~c~q~cf~~~ 50 (390)
.|.+|++ +.. .+|-.|.. |--.|+||...
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d--------~DLC~~Cf~~g 34 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFN--------YDLCQSCFFSG 34 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCC--------cCchHHHHhCC
Confidence 5888886 343 77888864 33479999543
No 114
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=35.96 E-value=17 Score=24.94 Aligned_cols=21 Identities=33% Similarity=0.980 Sum_probs=15.1
Q ss_pred ccccccccCCcc-------ccccchhhc
Q 016390 11 TSLSCVRCGKPA-------HLQCPKCME 31 (390)
Q Consensus 11 ~~~~c~~c~~~~-------~~~c~~c~~ 31 (390)
....|.+||... .+.||.|-.
T Consensus 2 ~~y~C~~CG~~~~~~~~~~~~~Cp~CG~ 29 (46)
T PRK00398 2 AEYKCARCGREVELDEYGTGVRCPYCGY 29 (46)
T ss_pred CEEECCCCCCEEEECCCCCceECCCCCC
Confidence 346799998743 388998863
No 115
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=35.85 E-value=12 Score=25.98 Aligned_cols=35 Identities=29% Similarity=0.786 Sum_probs=23.4
Q ss_pred cccccCC-ccc---cccchhhccCCCCCCCcccChhHhhhhhHHHHHhh
Q 016390 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (390)
Q Consensus 14 ~c~~c~~-~~~---~~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h 58 (390)
.|.+|+. +.. .+|-.|.. |-..+.||.. +.|..-|
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~d--------yDLC~~Cf~~--~~H~~~H 40 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDD--------FDFCENCFKT--RKHNTRH 40 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCC--------ccchHHhhCC--CCcCCCC
Confidence 5888886 443 77888874 4558999987 3454444
No 116
>PRK01490 tig trigger factor; Provisional
Probab=35.44 E-value=1.7e+02 Score=29.89 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCCeEEEeeeeeeCcEEeee----eeE
Q 016390 172 GVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDL----NET 247 (390)
Q Consensus 172 GvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDiV~iD~g~~~~GY~~D~----~RT 247 (390)
-+|+.+|+..+.+....++-+ .+.+++++.||.|.||+....+|=.-+- ..+
T Consensus 131 ~vtde~vd~~i~~l~~~~a~~------------------------~~~~~~~~~gD~V~vd~~~~~~g~~~~~~~~~~~~ 186 (435)
T PRK01490 131 EVTDEDVDEELERLRKQFATL------------------------VPVERPAENGDRVTIDFVGSIDGEEFEGGKAEDFS 186 (435)
T ss_pred CCCHHHHHHHHHHHHHhCCcc------------------------ccccccCCCCCEEEEEEEEEECCEECcCCCCCceE
Confidence 357788888888766654422 1224678999999999999887744222 356
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016390 248 YFVGNADEASRQLVQCTYECLEKAISIVKPGV 279 (390)
Q Consensus 248 ~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~ 279 (390)
|.+|... ....++.++--+++|-
T Consensus 187 ~~lg~~~---------~~~~fee~L~G~k~Ge 209 (435)
T PRK01490 187 LELGSGR---------FIPGFEEQLVGMKAGE 209 (435)
T ss_pred EEEcCCC---------cchhHHHHhCCCCCCC
Confidence 6677310 1233445555566663
No 117
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=35.23 E-value=12 Score=26.25 Aligned_cols=29 Identities=28% Similarity=0.707 Sum_probs=20.0
Q ss_pred cccccC-Cccc---cccchhhccCCCCCCCcccChhHhhhh
Q 016390 14 SCVRCG-KPAH---LQCPKCMELKLPREGAAFCTQDCFKAS 50 (390)
Q Consensus 14 ~c~~c~-~~~~---~~c~~c~~~~~~~~~~~~c~q~cf~~~ 50 (390)
.|.+|+ ++.. .+|-.|.. |--.++||...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d--------~dlC~~Cf~~~ 34 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYD--------YDLCADCYDSG 34 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCC--------CccchhHHhCC
Confidence 488888 4553 77777754 44578999765
No 118
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=34.04 E-value=1.9e+02 Score=29.30 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCC-CCCcCCCCCeEEEeeeeeeCcEEeeee----e
Q 016390 172 GVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP-DSRKLEDGDIVNIDVTVYYKGVHGDLN----E 246 (390)
Q Consensus 172 GvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p-~~r~L~~GDiV~iD~g~~~~GY~~D~~----R 246 (390)
-+|+.+|++.+.+....++-+- + ++++++.||.|.+|+....+|=.-+-+ .
T Consensus 119 ~vtde~vd~~i~~l~~~~a~~~------------------------~~~~~~~~~gD~V~v~~~~~~dg~~~~~~~~~~~ 174 (408)
T TIGR00115 119 EVTDEDVDEELEKLREQNATLV------------------------PVERRAAEKGDRVTIDFEGFIDGEAFEGGKAENF 174 (408)
T ss_pred CCCHHHHHHHHHHHHHhCCccc------------------------cccccccCCCCEEEEEEEEEECCEECcCCCCCCe
Confidence 3588888888888777665321 1 235789999999999988776443322 3
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016390 247 TYFVGNADEASRQLVQCTYECLEKAISIVKPGV 279 (390)
Q Consensus 247 T~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~ 279 (390)
+|.+|.. .....++.++.-++.|-
T Consensus 175 ~~~lg~~---------~~~~~~ee~L~G~k~Gd 198 (408)
T TIGR00115 175 SLELGSG---------QFIPGFEEQLVGMKAGE 198 (408)
T ss_pred EEEECCC---------CcchhHHHHhCCCCCCC
Confidence 6667631 12234455555566663
No 119
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=33.25 E-value=14 Score=40.84 Aligned_cols=40 Identities=33% Similarity=0.733 Sum_probs=0.0
Q ss_pred CCCccccccccccccCCccc-cccchhhccCCCCCCCcccChhHh
Q 016390 4 GSDAAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQDCF 47 (390)
Q Consensus 4 ~~~~~~~~~~~c~~c~~~~~-~~c~~c~~~~~~~~~~~~c~q~cf 47 (390)
|+-.+|...|.|..||+.+- ..||.|-..-.+ .|+|. .|-
T Consensus 647 g~i~vei~~r~Cp~Cg~~t~~~~Cp~CG~~T~~---~~~Cp-~C~ 687 (900)
T PF03833_consen 647 GTIEVEIGRRRCPKCGKETFYNRCPECGSHTEP---VYVCP-DCG 687 (900)
T ss_dssp ---------------------------------------------
T ss_pred CeeEEeeecccCcccCCcchhhcCcccCCcccc---ceecc-ccc
Confidence 34567777899999999885 889999876544 56664 344
No 120
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=31.98 E-value=26 Score=38.03 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=24.2
Q ss_pred cccccccCCccc-cccchhhccCCCCCCCcccCh
Q 016390 12 SLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQ 44 (390)
Q Consensus 12 ~~~c~~c~~~~~-~~c~~c~~~~~~~~~~~~c~q 44 (390)
.+.|..||.+-. ..||.|-+..-+ ..-||.+
T Consensus 15 akFC~~CG~~l~~~~Cp~CG~~~~~--~~~fC~~ 46 (645)
T PRK14559 15 NRFCQKCGTSLTHKPCPQCGTEVPV--DEAHCPN 46 (645)
T ss_pred CccccccCCCCCCCcCCCCCCCCCc--ccccccc
Confidence 467999999865 789999988655 6778864
No 121
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=31.51 E-value=22 Score=41.18 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=15.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHH
Q 016390 141 EIKTPDQIERMRETCRIAREVLDA 164 (390)
Q Consensus 141 ~vKs~~EIe~mR~A~~ia~~~l~~ 164 (390)
.|.+..--+.|-+.++..+..|+.
T Consensus 837 iil~~~aa~yl~~va~fiDdLL~k 860 (1337)
T PRK14714 837 IVLSDGAAEYLLKVAKFVDDLLEK 860 (1337)
T ss_pred EEcchHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777666654
No 122
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=31.51 E-value=23 Score=23.11 Aligned_cols=20 Identities=25% Similarity=0.796 Sum_probs=13.3
Q ss_pred cccccccCC------------ccccccchhhc
Q 016390 12 SLSCVRCGK------------PAHLQCPKCME 31 (390)
Q Consensus 12 ~~~c~~c~~------------~~~~~c~~c~~ 31 (390)
.-.|.+|+. ...++|+.|..
T Consensus 2 ~i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred EEECCCCCCEEeCCHHHCCCCCcEEECCCCCC
Confidence 346777875 22388998864
No 123
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=30.38 E-value=23 Score=24.31 Aligned_cols=19 Identities=26% Similarity=0.808 Sum_probs=13.8
Q ss_pred cccccccCCcc------ccccchhh
Q 016390 12 SLSCVRCGKPA------HLQCPKCM 30 (390)
Q Consensus 12 ~~~c~~c~~~~------~~~c~~c~ 30 (390)
...|..||.+. .++||.|-
T Consensus 2 ~Y~C~~Cg~~~~~~~~~~irC~~CG 26 (44)
T smart00659 2 IYICGECGRENEIKSKDVVRCRECG 26 (44)
T ss_pred EEECCCCCCEeecCCCCceECCCCC
Confidence 35788898844 37888885
No 124
>PF05142 DUF702: Domain of unknown function (DUF702) ; InterPro: IPR007818 This is a family of plant proteins of unknown function.
Probab=29.81 E-value=20 Score=31.51 Aligned_cols=17 Identities=35% Similarity=0.943 Sum_probs=12.9
Q ss_pred cccccccCCccccccch
Q 016390 12 SLSCVRCGKPAHLQCPK 28 (390)
Q Consensus 12 ~~~c~~c~~~~~~~c~~ 28 (390)
...|+.||++|++-|+.
T Consensus 4 g~~CqdCGNqAkk~C~~ 20 (154)
T PF05142_consen 4 GISCQDCGNQAKKDCSH 20 (154)
T ss_pred CcchhhhcchhhcCCCc
Confidence 35799999999855553
No 125
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=29.43 E-value=21 Score=29.67 Aligned_cols=21 Identities=33% Similarity=0.815 Sum_probs=15.9
Q ss_pred cccccccCCccc-----cccchhhcc
Q 016390 12 SLSCVRCGKPAH-----LQCPKCMEL 32 (390)
Q Consensus 12 ~~~c~~c~~~~~-----~~c~~c~~~ 32 (390)
+-.|.+|+|+++ -+|+.|.+.
T Consensus 69 ~V~CP~C~K~TKmLGr~D~CM~C~~p 94 (114)
T PF11023_consen 69 QVECPNCGKQTKMLGRVDACMHCKEP 94 (114)
T ss_pred eeECCCCCChHhhhchhhccCcCCCc
Confidence 456999999885 678888754
No 126
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=29.43 E-value=26 Score=29.83 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=15.2
Q ss_pred cccccccCCcc------ccccchhhcc
Q 016390 12 SLSCVRCGKPA------HLQCPKCMEL 32 (390)
Q Consensus 12 ~~~c~~c~~~~------~~~c~~c~~~ 32 (390)
+|+|.+||+-- -..||.|-..
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~ 35 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQ 35 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCc
Confidence 58899998722 2778888765
No 127
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=29.19 E-value=16 Score=26.28 Aligned_cols=22 Identities=36% Similarity=1.044 Sum_probs=15.8
Q ss_pred ccccccCC---cc------ccccchhhccCC
Q 016390 13 LSCVRCGK---PA------HLQCPKCMELKL 34 (390)
Q Consensus 13 ~~c~~c~~---~~------~~~c~~c~~~~~ 34 (390)
-.|.-|+| .+ ...||.|+.++-
T Consensus 5 iRC~~CnKlLa~a~~~~yle~KCPrCK~vN~ 35 (60)
T COG4416 5 IRCAKCNKLLAEAEGQAYLEKKCPRCKEVNE 35 (60)
T ss_pred eehHHHhHHHHhcccceeeeecCCccceeee
Confidence 46888988 22 277999998754
No 128
>PF04181 RPAP2_Rtr1: Rtr1/RPAP2 family; InterPro: IPR007308 This entry represents a domain found in PAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 proteins. Its function is not known however it is thought to be a zinc finger.
Probab=29.09 E-value=26 Score=26.99 Aligned_cols=12 Identities=58% Similarity=1.423 Sum_probs=10.6
Q ss_pred CcccChhHhhhh
Q 016390 39 AAFCTQDCFKAS 50 (390)
Q Consensus 39 ~~~c~q~cf~~~ 50 (390)
+-|||..||+++
T Consensus 59 ~~fCS~~C~~~s 70 (79)
T PF04181_consen 59 SKFCSKDCYKAS 70 (79)
T ss_pred cCcCCHHHHHHH
Confidence 489999999886
No 129
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=28.90 E-value=17 Score=25.13 Aligned_cols=35 Identities=23% Similarity=0.571 Sum_probs=22.2
Q ss_pred cccccCC-cc---ccccchhhccCCCCCCCcccChhHhhhhhHHHHHhh
Q 016390 14 SCVRCGK-PA---HLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (390)
Q Consensus 14 ~c~~c~~-~~---~~~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk~~h 58 (390)
.|.+|++ +. .-+|-.|.. |--.++||.. +.|+.-|
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~d--------yDLC~~C~~~--~~H~~~H 40 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPN--------YDLCTTCYHG--DKHDLEH 40 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCC--------ccchHHHhCC--CCCCCCC
Confidence 5888885 33 377887753 4557899974 3444444
No 130
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=28.84 E-value=1.3e+02 Score=24.50 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=48.5
Q ss_pred eEEEeeeeeeCcEEeeeeeEEEecCCCHHHHHHHHHHHHHHHHHHHhcCCCC-------cHhHHHHHHHHHHHHcCC
Q 016390 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGV-------RFREIGEVINRHATMSGF 297 (390)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~~a~~~ai~~~kPG~-------~~~eI~~~i~~~~~~~G~ 297 (390)
-..+|+.+.+.+|- .+++.+.+-. ..+.++.++...+.....+..+--|+ +-.+..+.|.+.+++.||
T Consensus 22 g~V~DV~veHp~YG-~i~~~L~i~s-r~Dv~~Fi~~l~~~~~~~Ls~LT~GvH~HtI~a~~~e~l~~I~~~L~~~G~ 96 (98)
T PF02829_consen 22 GRVLDVIVEHPVYG-EITGNLNISS-RRDVDKFIEKLEKSKAKPLSSLTGGVHYHTIEAPDEEDLDKIEEALKKKGF 96 (98)
T ss_dssp -EEEEEEEEETTTE-EEEEEEEE-S-HHHHHHHHHHHHH--S--STTGGGGEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CEEEEEEEeCCCCc-EEEEEEecCC-HHHHHHHHHHHhccCCcchHHhcCCEeeEEEEECCHHHHHHHHHHHHHCCC
Confidence 34459999999988 9999999953 56677777777777666777776663 567788999999999997
No 131
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=28.70 E-value=2e+02 Score=28.83 Aligned_cols=52 Identities=12% Similarity=0.248 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCC
Q 016390 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPS 194 (390)
Q Consensus 143 Ks~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps 194 (390)
-|+.||+.+-++-..-+..+..-...+-|..++.||...++.++.+.-+.|.
T Consensus 97 Vs~~El~FLa~vP~~m~~~L~~~l~~~~p~l~~~~i~~~~~~sVldt~~SPT 148 (381)
T PF09506_consen 97 VSDAELAFLAAVPERMEALLKEFLPAILPELSQEEIEKLIEASVLDTRVSPT 148 (381)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCc
Confidence 4899999999999999999999999999999999999999999998877664
No 132
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=27.55 E-value=31 Score=22.39 Aligned_cols=20 Identities=25% Similarity=0.793 Sum_probs=12.7
Q ss_pred cccccccCC------------ccccccchhhc
Q 016390 12 SLSCVRCGK------------PAHLQCPKCME 31 (390)
Q Consensus 12 ~~~c~~c~~------------~~~~~c~~c~~ 31 (390)
...|..|+. ....+||.|..
T Consensus 2 ~~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~ 33 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQLGANGGKVRCGKCGH 33 (38)
T ss_pred EEECCCCCCEEEeCHHHcCCCCCEEECCCCCC
Confidence 346777776 11278888865
No 133
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=26.78 E-value=34 Score=21.86 Aligned_cols=17 Identities=35% Similarity=1.118 Sum_probs=11.7
Q ss_pred cccccCCccc------cccchhh
Q 016390 14 SCVRCGKPAH------LQCPKCM 30 (390)
Q Consensus 14 ~c~~c~~~~~------~~c~~c~ 30 (390)
+|..||.+.. ++||.|-
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG 24 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECG 24 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS
T ss_pred CCCcCCCeeEcCCCCcEECCcCC
Confidence 5777887543 7888774
No 134
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=26.67 E-value=87 Score=22.51 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHH---HHHh-ccCC-CCHHHHHHHHHH
Q 016390 150 RMRETCRIAREVLDA---AARM-IRPG-VTTDEIDRVVHE 184 (390)
Q Consensus 150 ~mR~A~~ia~~~l~~---a~~~-i~pG-vTe~ei~~~v~~ 184 (390)
.+.+|++|+.+++.. +.+. ++-| +|+.|+++++.-
T Consensus 10 GYe~aa~iAk~A~~~g~svre~v~~~g~lt~ee~d~ll~p 49 (55)
T PF10415_consen 10 GYEKAAEIAKEALAEGRSVREVVLEEGLLTEEELDELLDP 49 (55)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHTTSS-HHHHHHHTSH
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHcCH
Confidence 578899999998875 2222 3456 899999988753
No 135
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=26.54 E-value=27 Score=23.93 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=9.4
Q ss_pred CcccChhHhhhh
Q 016390 39 AAFCTQDCFKAS 50 (390)
Q Consensus 39 ~~~c~q~cf~~~ 50 (390)
-+|||++|-...
T Consensus 25 Y~FCS~~C~~~F 36 (47)
T PF04945_consen 25 YYFCSEGCKEKF 36 (47)
T ss_dssp EEESSHHHHHHH
T ss_pred EEEcCHHHHHHH
Confidence 489999997543
No 136
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase. Proteins in this family are glucosylglycerol-phosphate phosphatase, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=26.54 E-value=2.2e+02 Score=28.58 Aligned_cols=52 Identities=13% Similarity=0.281 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCC
Q 016390 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPS 194 (390)
Q Consensus 143 Ks~~EIe~mR~A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ps 194 (390)
-|+.||+.+-++-..-+..+..-...+-|..++.||...++.++.+.-..|.
T Consensus 103 Vs~~El~FLa~vP~~m~~~L~~~l~~~~p~l~~~~i~~~~~~aVldt~~SPT 154 (389)
T TIGR02399 103 VSKEEVDFLAAVPDLMRPSLEQIVKKIFPNLVQEEIQTHASKSVLDTRFSPT 154 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCc
Confidence 4899999999999999999999999999999999999999999998877664
No 137
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=26.10 E-value=49 Score=32.37 Aligned_cols=47 Identities=17% Similarity=0.425 Sum_probs=33.6
Q ss_pred CCCccccccccccccCCccc----cccchhhccCCCCCCCcccChhHhhhhhHHHH
Q 016390 4 GSDAAETTSLSCVRCGKPAH----LQCPKCMELKLPREGAAFCTQDCFKASWTSHK 55 (390)
Q Consensus 4 ~~~~~~~~~~~c~~c~~~~~----~~c~~c~~~~~~~~~~~~c~q~cf~~~w~~hk 55 (390)
.-|..+..-..|..|..+.. ++|+-|...-. ..|+.+|....=..+.
T Consensus 235 ~~~l~~~~~~~C~~C~~p~~~~~~~~~~~~~~~~~-----~~C~~ec~~~~~~r~~ 285 (308)
T COG1054 235 PIGLVEGDHTPCDNCRNPLCNLLFISCEYCEGKYC-----GCCSDECSEEPRLRYE 285 (308)
T ss_pred cCcccCCCcchhhhcCCCCCHHHhhcchhhhcccC-----CCccHHHhhhhhhHHH
Confidence 44556666678999999886 77888886544 4899999876543333
No 138
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=26.02 E-value=23 Score=25.24 Aligned_cols=23 Identities=26% Similarity=0.885 Sum_probs=16.0
Q ss_pred ccccccCC---c------cccccchhhccCCC
Q 016390 13 LSCVRCGK---P------AHLQCPKCMELKLP 35 (390)
Q Consensus 13 ~~c~~c~~---~------~~~~c~~c~~~~~~ 35 (390)
-.|..|++ . ...+||.|..++.-
T Consensus 5 iRC~~CnklLa~~g~~~~leIKCpRC~tiN~~ 36 (51)
T PF10122_consen 5 IRCGHCNKLLAKAGEVIELEIKCPRCKTINHV 36 (51)
T ss_pred eeccchhHHHhhhcCccEEEEECCCCCccceE
Confidence 45777876 1 13789999987653
No 139
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=25.91 E-value=21 Score=29.61 Aligned_cols=23 Identities=26% Similarity=0.813 Sum_probs=14.9
Q ss_pred cccccccCCccc-----cccchhhccCC
Q 016390 12 SLSCVRCGKPAH-----LQCPKCMELKL 34 (390)
Q Consensus 12 ~~~c~~c~~~~~-----~~c~~c~~~~~ 34 (390)
...|..||+.-. ..||.|....+
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSPDV 97 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS-E
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCCCc
Confidence 456999998553 78999987653
No 140
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=25.86 E-value=33 Score=20.51 Aligned_cols=8 Identities=38% Similarity=1.190 Sum_probs=5.7
Q ss_pred ccccchhh
Q 016390 23 HLQCPKCM 30 (390)
Q Consensus 23 ~~~c~~c~ 30 (390)
...||.|-
T Consensus 16 ~f~CPnCG 23 (24)
T PF07754_consen 16 PFPCPNCG 23 (24)
T ss_pred eEeCCCCC
Confidence 37788874
No 141
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=25.17 E-value=35 Score=28.35 Aligned_cols=23 Identities=30% Similarity=0.738 Sum_probs=15.6
Q ss_pred cccccccCCcc-----ccccchhhccCC
Q 016390 12 SLSCVRCGKPA-----HLQCPKCMELKL 34 (390)
Q Consensus 12 ~~~c~~c~~~~-----~~~c~~c~~~~~ 34 (390)
...|..||... .+.||.|...++
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCHGERL 97 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCCCCCc
Confidence 35688898743 266999986554
No 142
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=25.15 E-value=1.5e+02 Score=22.25 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHH
Q 016390 253 ADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (390)
Q Consensus 253 ~~~~~~~l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~ 294 (390)
.+.+++.+.+.+.+.++.+++.++.|.+..=+...++.+.+.
T Consensus 10 ~~~Rq~~~L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~ 51 (73)
T PF12631_consen 10 TNARQRQLLEQALEHLEDALEALENGLPLDLVAEDLREALES 51 (73)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999997766555555555444
No 143
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=25.06 E-value=39 Score=26.23 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCC
Q 016390 157 IAREVLDAAARMIRPGVTTDEIDRVVHEATITAGG 191 (390)
Q Consensus 157 ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~ 191 (390)
|+.++.....+..+.++|+.||..++...+.+.|.
T Consensus 40 i~~~V~~~l~~~~~~~is~~eI~~~v~~~L~~~~~ 74 (90)
T PF03477_consen 40 IASEVENKLYDSGKEEISTEEIQDIVENALMEEGF 74 (90)
T ss_dssp HHHHHHTC-ST----TEEHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhccCCCeeHHHHHHHHHHHHHcCCh
Confidence 33333333333333399999999999999997763
No 144
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=23.46 E-value=40 Score=22.05 Aligned_cols=9 Identities=44% Similarity=1.279 Sum_probs=6.4
Q ss_pred ccccchhhc
Q 016390 23 HLQCPKCME 31 (390)
Q Consensus 23 ~~~c~~c~~ 31 (390)
.++||.|..
T Consensus 25 ~vrC~~C~~ 33 (37)
T PF13719_consen 25 KVRCPKCGH 33 (37)
T ss_pred EEECCCCCc
Confidence 378888864
No 145
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=22.63 E-value=42 Score=27.93 Aligned_cols=23 Identities=30% Similarity=0.859 Sum_probs=16.2
Q ss_pred cccccccCCccc-----cccchhhccCC
Q 016390 12 SLSCVRCGKPAH-----LQCPKCMELKL 34 (390)
Q Consensus 12 ~~~c~~c~~~~~-----~~c~~c~~~~~ 34 (390)
...|..|++... ..||.|....+
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (115)
T TIGR00100 70 ECECEDCSEEVSPEIDLYRCPKCHGIML 97 (115)
T ss_pred EEEcccCCCEEecCCcCccCcCCcCCCc
Confidence 356888987442 66999987654
No 146
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=22.36 E-value=36 Score=24.59 Aligned_cols=21 Identities=43% Similarity=0.963 Sum_probs=14.2
Q ss_pred cccccCCcc-------------ccccchhhccCC
Q 016390 14 SCVRCGKPA-------------HLQCPKCMELKL 34 (390)
Q Consensus 14 ~c~~c~~~~-------------~~~c~~c~~~~~ 34 (390)
.|..||+.+ -|-||.|++..+
T Consensus 6 ~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~Etl 39 (55)
T PF14205_consen 6 LCPICGNKTRLKIREDTVLKNFPLYCPKCKQETL 39 (55)
T ss_pred ECCCCCCccceeeecCceeccccccCCCCCceEE
Confidence 577788533 167999987654
No 147
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.33 E-value=45 Score=22.43 Aligned_cols=23 Identities=26% Similarity=0.830 Sum_probs=15.9
Q ss_pred ccccccCC----------ccccccchhhccCCC
Q 016390 13 LSCVRCGK----------PAHLQCPKCMELKLP 35 (390)
Q Consensus 13 ~~c~~c~~----------~~~~~c~~c~~~~~~ 35 (390)
..|..||. .....||.|....+.
T Consensus 6 y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~~~~ 38 (42)
T PF09723_consen 6 YRCEECGHEFEVLQSISEDDPVPCPECGSTEVR 38 (42)
T ss_pred EEeCCCCCEEEEEEEcCCCCCCcCCCCCCCceE
Confidence 46888884 234889999875443
No 148
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=22.25 E-value=2.3e+02 Score=21.73 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=30.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCCeEEE
Q 016390 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNI 231 (390)
Q Consensus 169 i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDiV~i 231 (390)
++.|.|-.|++..+|..+.+. |-..+. ..| ..-.+-+.+|++||+|.|
T Consensus 27 l~~GaTv~D~A~~IHtdi~~~-----------f~~Ai~-~k~---~~~vg~~~~L~dgDvV~I 74 (76)
T cd01669 27 LPKGSTARDLAYAIHTDIGDG-----------FLHAID-ART---GRRVGEDYELKHRDVIKI 74 (76)
T ss_pred ECCCCCHHHHHHHHHHHHHhc-----------ceeeEE-eeC---CEEeCCCcEecCCCEEEE
Confidence 466899999999999777643 110111 111 233455778999999987
No 149
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=21.68 E-value=96 Score=22.44 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=30.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCCeEEE
Q 016390 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNI 231 (390)
Q Consensus 169 i~pGvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDiV~i 231 (390)
+..|.|-.|++..++..+.++= +..-+|. .-..-+++|++||.|.|
T Consensus 13 ~~~g~T~~d~A~~I~~~l~~~~--------------~~A~Vng---~~vdl~~~L~~~d~v~i 58 (60)
T PF02824_consen 13 LPEGSTVLDVAYSIHSSLAKRA--------------VAAKVNG---QLVDLDHPLEDGDVVEI 58 (60)
T ss_dssp EETTBBHHHHHHHHSHHHHHCE--------------EEEEETT---EEEETTSBB-SSEEEEE
T ss_pred CCCCCCHHHHHHHHCHHHHhhe--------------eEEEEcC---EECCCCCCcCCCCEEEE
Confidence 5679999999999999887741 1222332 11234688999999876
No 150
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.51 E-value=46 Score=24.05 Aligned_cols=21 Identities=33% Similarity=0.860 Sum_probs=16.6
Q ss_pred ccccccccCCccc-----cccchhhc
Q 016390 11 TSLSCVRCGKPAH-----LQCPKCME 31 (390)
Q Consensus 11 ~~~~c~~c~~~~~-----~~c~~c~~ 31 (390)
...+|..||++-+ .+||.|..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~Cga 29 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGA 29 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCC
Confidence 4567999999773 88999975
No 151
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=20.75 E-value=45 Score=37.58 Aligned_cols=33 Identities=33% Similarity=0.688 Sum_probs=26.7
Q ss_pred ccccccccccccCCccc-cccchhhccCCCCCCCccc
Q 016390 7 AAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFC 42 (390)
Q Consensus 7 ~~~~~~~~c~~c~~~~~-~~c~~c~~~~~~~~~~~~c 42 (390)
.+|-..|+|..||+.+- ..||.|-..-.+ .++|
T Consensus 620 ~vev~~RKCPkCG~yTlk~rCP~CG~~Te~---~~pc 653 (1095)
T TIGR00354 620 EVEIAIRKCPQCGKESFWLKCPVCGELTEQ---LYYG 653 (1095)
T ss_pred EEEEEEEECCCCCcccccccCCCCCCcccc---ccce
Confidence 45666799999999885 999999977544 6889
No 152
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=20.41 E-value=49 Score=34.59 Aligned_cols=70 Identities=23% Similarity=0.254 Sum_probs=46.4
Q ss_pred CCCeEEEeeeeeeCcEEeeeeeEEEecC--------CCHHHHH--HHHHHHHHHHHHHHhcCCCCcHhHHHHHHHHHHHH
Q 016390 225 DGDIVNIDVTVYYKGVHGDLNETYFVGN--------ADEASRQ--LVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (390)
Q Consensus 225 ~GDiV~iD~g~~~~GY~~D~~RT~~vG~--------~~~~~~~--l~~~~~~a~~~ai~~~kPG~~~~eI~~~i~~~~~~ 294 (390)
.+|.-.+-+++.|.||++|+++-++.|- .-|.... +-...-+..-..++.++||..-.++-.+-+.++.+
T Consensus 583 snD~taLvvS~aYkG~WsDLsELWFLGMQt~~G~lPLvPWLs~~AL~S~W~e~ivk~L~kVk~~tl~~nv~sAYe~~L~q 662 (698)
T KOG2611|consen 583 SNDPTALVVSIAYKGYWSDLSELWFLGMQTMCGVLPLVPWLSEFALESGWAEGIVKTLKKVKIGTLPANVKSAYEDFLSQ 662 (698)
T ss_pred cCCCceEEeehhhhhhhhhHHHHHHHhHHHHcCcccchhhhcHHHHhcccHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 3677777799999999999999999871 1122221 12223344555678889998777776666555443
No 153
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=20.32 E-value=2.5e+02 Score=24.68 Aligned_cols=39 Identities=13% Similarity=0.005 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCC
Q 016390 154 TCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY 192 (390)
Q Consensus 154 A~~ia~~~l~~a~~~i~pGvTe~ei~~~v~~~~~~~g~~ 192 (390)
+..++.++...+......++|..||..++.+.|.+.|-.
T Consensus 84 ~~~i~~~V~~~l~~~~~~~IsveEIqDiVE~~L~~~~~~ 122 (154)
T PRK00464 84 IEAAVSRIERQLRASGEREVPSKEIGELVMEELKKLDEV 122 (154)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCE
Confidence 344555555555555556899999999999999998753
No 154
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=20.15 E-value=41 Score=26.86 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=23.7
Q ss_pred cccccccCCccc-cccchhhccCCCCCCCcccChhH
Q 016390 12 SLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQDC 46 (390)
Q Consensus 12 ~~~c~~c~~~~~-~~c~~c~~~~~~~~~~~~c~q~c 46 (390)
-|+|+.|+--.. ..|..|--.|+. ..|||..-|
T Consensus 43 VRiC~eC~~Gs~q~~ciic~~~gV~--d~~yc~ect 76 (110)
T KOG1705|consen 43 VRICDECNYGSYQGRCVICGGVGVS--DAYYCKECT 76 (110)
T ss_pred eeeehhcCCccccCceEEecCCccc--chHHHHHHH
Confidence 366777755433 679999998887 689987544
No 155
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=20.14 E-value=2e+02 Score=29.90 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCCcCCceeeeCCCCccccCCCCCCcCCCCCeEEEeeeeeeCcE
Q 016390 172 GVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGV 240 (390)
Q Consensus 172 GvTe~ei~~~v~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~Hg~p~~r~L~~GDiV~iD~g~~~~GY 240 (390)
-+|+.+|+..+......+.-+ .|.++.++.||.|.||+.+..+|=
T Consensus 131 ev~d~dvd~~L~~l~~~~a~~------------------------~~~e~~a~~gD~v~IDf~g~iDg~ 175 (441)
T COG0544 131 EVTDEDVDEELEKLRKRFATL------------------------EPVEGAAENGDRVTIDFEGSVDGE 175 (441)
T ss_pred ccCHHHHHHHHHHHHHhcCcc------------------------cccccccccCCEEEEEEEEEEcCe
Confidence 357888888887655543211 122222899999999999877663
Done!