RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016390
(390 letters)
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 772 bits (1995), Expect = 0.0
Identities = 314/373 (84%), Positives = 341/373 (91%), Gaps = 2/373 (0%)
Query: 4 GSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKL 63
+A T+ L+C RC KPAHLQCPKC+ELKLPREGA+FC+QDCFKA+W+SHKSVH KAKL
Sbjct: 1 MEEALTTSPLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKSVHTKAKL 60
Query: 64 SAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWA 123
S+ G+NS +EGW YC+KKGQART KLP FDWTG LRPYPIS + VP +I PDWA
Sbjct: 61 SS--IGQNSDAPAEGWLYCLKKGQARTSKLPDFDWTGPLRPYPISPRRVVPDHIPKPDWA 118
Query: 124 LDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVH 183
LDGTPK+EPNSDLQH VEIKTP+QI+RMRETCRIAREVLDAAAR I+PGVTTDEIDRVVH
Sbjct: 119 LDGTPKIEPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVH 178
Query: 184 EATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGD 243
EATI AGGYPSPLNYHFFPKSCCTSVNEVICHGIPD+RKLEDGDIVN+DVTVYYKG HGD
Sbjct: 179 EATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGD 238
Query: 244 LNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY 303
LNET+FVGN DEASRQLV+CTYECLEKAI+IVKPGVR+RE+GEVINRHATMSG SVVKSY
Sbjct: 239 LNETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVVKSY 298
Query: 304 CGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADG 363
CGHGIGELFHCAPNIPHY+RNKAVGVMK GQ FTIEPMINAGVWRDRMWPDGWTAVTADG
Sbjct: 299 CGHGIGELFHCAPNIPHYARNKAVGVMKAGQVFTIEPMINAGVWRDRMWPDGWTAVTADG 358
Query: 364 KRSAQFEHTLLVS 376
KRSAQFEHTLLV+
Sbjct: 359 KRSAQFEHTLLVT 371
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 391 bits (1008), Expect = e-137
Identities = 125/228 (54%), Positives = 151/228 (66%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
IE MRE RI EVLD A+ I+PGVTT E+D++ HE G YP+PL Y+ FPKS CT
Sbjct: 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICT 60
Query: 208 SVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYEC 267
SVNEV+CHGIPD R L+DGDIVNIDV V G HGD T+ VG E +++LV+ T E
Sbjct: 61 SVNEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEA 120
Query: 268 LEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAV 327
L K I VKPG R +IG I ++A +G+SVV+ + GHGIG FH P IP+Y R
Sbjct: 121 LYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHGIGRKFHEEPQIPNYGRPGTG 180
Query: 328 GVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLV 375
+K G FTIEPMIN G + PDGWT VT DG SAQFEHT+L+
Sbjct: 181 PKLKPGMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLI 228
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 372 bits (959), Expect = e-130
Identities = 125/245 (51%), Positives = 154/245 (62%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
+ IKTP++IE+MR R+A EVLD ++PGVTT E+DR+ E G P+PL Y
Sbjct: 2 AITIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
H FPKS CTSVNEV+CHGIP + L++GDIVNIDVTV G HGD + T+ VG +
Sbjct: 62 HGFPKSICTSVNEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDK 121
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNI 318
+L + T E L I+ VKPG R +IG I ++A GFSVV+ YCGHGIG FH P I
Sbjct: 122 RLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVVREYCGHGIGRKFHEEPQI 181
Query: 319 PHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAH 378
PHY V+K G FTIEPMINAG + DGWT VT DG SAQ+EHT+ V+
Sbjct: 182 PHYGAPGDGPVLKEGMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTED 241
Query: 379 TYYIF 383
I
Sbjct: 242 GPEIL 246
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 333 bits (855), Expect = e-114
Identities = 110/243 (45%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
++ IKTP++IE+MRE +IA + L A +++PGVTT E+D + E G YP+ L Y
Sbjct: 2 MISIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIP-DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-ADEA 256
FP C SVNEV+ HGIP D + L++GDIV IDV + G GD T+ VG +DE
Sbjct: 62 KGFPFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDED 121
Query: 257 SRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAP 316
+++L++ T E L I VKPG R +IG I +A GFSVV++ GHGIG H P
Sbjct: 122 AKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVVRNLTGHGIGRELHEEP 181
Query: 317 NIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWP-DGWTAVTADGKRSAQFEHTLLV 375
+IP+Y ++ +K G F IEPMIN G P D WT VT DG SAQFEHT++V
Sbjct: 182 SIPNYGKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPSDRWTLVTKDGSLSAQFEHTVIV 241
Query: 376 SAH 378
+
Sbjct: 242 TED 244
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 317 bits (815), Expect = e-108
Identities = 115/239 (48%), Positives = 153/239 (64%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
+ +K+PD+IE++R+ R+A EVL+ R ++PGV+T E+DR+ + G P+ L Y+
Sbjct: 1 ISLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYY 60
Query: 200 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 259
FP S C SVNEV+ HGIPD + L+DGDIVNIDV V Y G HGD +T+ VG + +
Sbjct: 61 GFPGSVCISVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEK 120
Query: 260 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIP 319
L++CT E L KAI KPG R EIG I ++A GFSVV+ YCGHGIG FH P IP
Sbjct: 121 LLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVVREYCGHGIGRKFHEEPQIP 180
Query: 320 HYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAH 378
+Y + +K G FTIEPM+N G DGWT T DG SAQFEHT++++ +
Sbjct: 181 NYGKKFTNVRLKEGMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITDN 239
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 299 bits (767), Expect = e-101
Identities = 97/244 (39%), Positives = 134/244 (54%), Gaps = 1/244 (0%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
+EIK+P ++E+MR+ RI L + + PG+TT E+DR+ + G PSP Y+
Sbjct: 8 MEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYY 67
Query: 200 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 259
FP S C SVNE + HGIP R ++DGD+VNIDV+ Y G HGD T+ VG E + +
Sbjct: 68 GFPGSTCISVNEEVAHGIPGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEK 127
Query: 260 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN-I 318
L + E L I VK G +IG I A +G+SVV+ GHG+G H P+ I
Sbjct: 128 LCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVVRDLTGHGVGRSLHEEPSVI 187
Query: 319 PHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAH 378
Y+ +++ G T +EP +N G DGWT VT D SAQFEHT++V+
Sbjct: 188 LTYTDPLPNRLLRPGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTRD 247
Query: 379 TYYI 382
I
Sbjct: 248 GPEI 251
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 243 bits (622), Expect = 1e-78
Identities = 110/249 (44%), Positives = 154/249 (61%), Gaps = 4/249 (1%)
Query: 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL 196
Q+ + IKTP+QIE++R+ C++ +LDA + GVTT+E+D + E P+PL
Sbjct: 38 QYDIIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPL 97
Query: 197 NYHF--FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNAD 254
NY FPK+ CTS+NEVICHGIP+ L++GDI+NIDV+ G +GD + +G
Sbjct: 98 NYGSPPFPKTICTSLNEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVS 157
Query: 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHC 314
E +++ Q + ECL AI+I+KPG+ EIGEVI A GFSVV + GHG+G FH
Sbjct: 158 EIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQFVGHGVGIKFHE 217
Query: 315 APNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWP-DGWTAVTADGKRSAQFEHTL 373
P +PH+ RN + + G FTIEPMIN G + P + W A T D + SAQ+EHT+
Sbjct: 218 NPYVPHH-RNSSKIPLAPGMIFTIEPMINVGKKEGVIDPINHWEARTCDNQPSAQWEHTI 276
Query: 374 LVSAHTYYI 382
L++ Y I
Sbjct: 277 LITETGYEI 285
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 195 bits (499), Expect = 4e-61
Identities = 75/228 (32%), Positives = 97/228 (42%), Gaps = 23/228 (10%)
Query: 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTS 208
E MR+ RIA L+AA IRPGVT E+ + A + GG FP +
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGA----RGPAFPPIVASG 56
Query: 209 VNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECL 268
N + H IP R L+DGD+V IDV Y G H D+ T+ VG R+L + E
Sbjct: 57 PNAAVPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEAVLEAQ 116
Query: 269 EKAISIVKPGVRFREIGEVINRHATMSGFS-VVKSYCGHGIGELFHCAPNIPHYSRNKAV 327
E AI+ VKPGV ++ G+ GHGIG H P+ SR
Sbjct: 117 EAAIAAVKPGVTGGDVDAAAREVLEEGGYGEYFPHGLGHGIGLDVH--DEGPYISRGGND 174
Query: 328 GVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLV 375
V++ G FTIEP I G + E T+LV
Sbjct: 175 RVLEPGMVFTIEPGI----------------YFIPGWGGVRIEDTVLV 206
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 159 bits (404), Expect = 1e-46
Identities = 81/238 (34%), Positives = 125/238 (52%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
++ IKT ++I+ M E+ ++ A++++PG+TT EI+ V G Y
Sbjct: 1 MITIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGY 60
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
+ +P + C SVN+ +CH P L +GDIV ID+ V G D TY VG + +
Sbjct: 61 NGYPYAICASVNDEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAE 120
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNI 318
+L+ L K I G R +IG I + GFSV + + GHGIG+ H P I
Sbjct: 121 KLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVARDFTGHGIGKEIHEEPAI 180
Query: 319 PHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVS 376
H+ + ++ G TIEP++N G+ ++ +GWTA T DGK SAQ+EHT+ ++
Sbjct: 181 FHFGKQGQGPELQEGMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAIT 238
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 147 bits (374), Expect = 1e-42
Identities = 64/236 (27%), Positives = 96/236 (40%), Gaps = 32/236 (13%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
I R+R+ IA + AAA IRPGVT E+ + +A AGGYP+
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYPAG--------PTIV 52
Query: 208 SVNEV--ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTY 265
+ H PD R+L++GD+V +D+ Y G H DL T+ +G + R+L +
Sbjct: 53 GSGARTALPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVR 112
Query: 266 ECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVK-SYCGHGIGELFHCAPNIPHYSRN 324
E E A++ ++PGV E+ G GHGIG H P +
Sbjct: 113 EAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGHGIGLEIHEPPVLKAGDD- 171
Query: 325 KAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVSAHTY 380
V++ G F +EP + G + E T+LV+
Sbjct: 172 ---TVLEPGMVFAVEPGLY-----------------LPGGGGVRIEDTVLVTEDGP 207
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 136 bits (344), Expect = 2e-36
Identities = 62/206 (30%), Positives = 93/206 (45%), Gaps = 15/206 (7%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGG-YPSPLNYHF 200
IK+P +I ++R+ IA L+AA IRPG+T EI + A G PS
Sbjct: 154 IKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGPS------ 207
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQL 260
F + N + H P RKL DGD+V ID+ Y G D+ T+ +G + R++
Sbjct: 208 FDTIVASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREI 267
Query: 261 VQCTYECLEKAISIVKPGVRFREIGE----VINRHATMSGFSVVKSYCGHGIGELFHCAP 316
+ E E AI+ ++PGV E+ V+ + F + GHG+G
Sbjct: 268 YEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYF--LHGT-GHGVG-FVLDVH 323
Query: 317 NIPHYSRNKAVGVMKVGQTFTIEPMI 342
P Y + ++ G F+IEP I
Sbjct: 324 EHPQYLSPGSDTTLEPGMVFSIEPGI 349
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 123 bits (312), Expect = 1e-32
Identities = 65/198 (32%), Positives = 96/198 (48%), Gaps = 18/198 (9%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
+E+ E +IA +V + AA++I+PG ++ V G P+ FP C
Sbjct: 2 LEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FP--CNI 53
Query: 208 SVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCT 264
S+NEV H P D R +GD+V +D+ + G D T +G E LV+ +
Sbjct: 54 SINEVAAHYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLGGKYE---DLVEAS 110
Query: 265 YECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIG--ELFHCAPNIPHYS 322
E LE AI +V+PGV EIG VI GF +++ GHG+ EL H P+IP+Y
Sbjct: 111 EEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNLTGHGLERYEL-HAGPSIPNY- 168
Query: 323 RNKAVGVMKVGQTFTIEP 340
++ G + IEP
Sbjct: 169 DEGGGVKLEEGDVYAIEP 186
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
Length = 286
Score = 119 bits (300), Expect = 4e-31
Identities = 68/270 (25%), Positives = 109/270 (40%), Gaps = 32/270 (11%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL-- 196
++ +K+ +IE M + +I+PGV E++ V P +
Sbjct: 1 MITLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGV 60
Query: 197 --NYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDV--------------------- 233
+P + C +N+ + H P L++GD++ +D+
Sbjct: 61 DGAMMDYPYATCCGLNDEVAHAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNV 120
Query: 234 ------TVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEV 287
T Y+G D Y VG + + L+ T E + + I G R +IG
Sbjct: 121 EQMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAA 180
Query: 288 INRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVW 347
I +A G+ VV+ GHG+G H P +P+Y ++ G TIEPMIN G W
Sbjct: 181 IQEYAESRGYGVVRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMVLTIEPMINTGTW 240
Query: 348 R-DRMWPDGWTAVTADGKRSAQFEHTLLVS 376
D GW T DG S Q+EH +++
Sbjct: 241 EIDTDMKTGWAHKTLDGGLSCQYEHQFVIT 270
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 111 bits (280), Expect = 7e-29
Identities = 63/208 (30%), Positives = 90/208 (43%), Gaps = 34/208 (16%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY-PSPLNYHFFPKSCC 206
IE +R+ RIA + + I+PG+T E+ + G PS F
Sbjct: 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEGPS------FDTIVA 54
Query: 207 TSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYE 266
+ N + HG+P RK+E+GD+V ID Y G D+ T VG + +++ + E
Sbjct: 55 SGPNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLE 114
Query: 267 CLEKAISIVKPGVRFREIG----EVINR--------HATMSGFSVVKSYCGHGIGELFHC 314
+ AI VKPGV +E+ +VI H T GHG+G H
Sbjct: 115 AQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEYFIHRT-----------GHGVGLEVHE 163
Query: 315 APNIPHYSRNKAVGVMKVGQTFTIEPMI 342
AP I S V++ G FTIEP I
Sbjct: 164 APYISPGSD----DVLEEGMVFTIEPGI 187
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 103 bits (260), Expect = 2e-25
Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 20/199 (10%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
+E+ RE I R+V A +I+PG+T EI V G P+ FP +
Sbjct: 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGPA------FPVNL-- 52
Query: 208 SVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVH--GDLNETYFVGNADEASRQLVQ 262
S+NE H P D L++GD+V +D G H G + ++ F + D L++
Sbjct: 53 SINECAAHYTPNAGDDTVLKEGDVVKLDF-----GAHVDGYIADSAFTVDFDPKYDDLLE 107
Query: 263 CTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGE-LFHCAPNIPHY 321
E L AI P VR EIGE I GF +++ GH I H +IP+
Sbjct: 108 AAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLTGHSIERYRLHAGKSIPNV 167
Query: 322 SRNKAVGVMKVGQTFTIEP 340
+ ++ G + IEP
Sbjct: 168 -KGGEGTRLEEGDVYAIEP 185
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 101 bits (254), Expect = 2e-24
Identities = 55/203 (27%), Positives = 82/203 (40%), Gaps = 16/203 (7%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
E+ E +I +V AA I PGV E+ V G P+ FP C
Sbjct: 5 AEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEPA------FP--CNI 56
Query: 208 SVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCT 264
S+NE H P D +DGD+V +D+ + V G + +T + + LV+
Sbjct: 57 SINECAAHFTPKAGDKTVFKDGDVVKLDLGAH---VDGYIADTAITVDLGDQYDNLVKAA 113
Query: 265 YECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGE-LFHCAPNIPHYSR 323
+ L AI ++ GVR EIG+ I G + + GH + H +IP+
Sbjct: 114 KDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPISNLTGHSMAPYRLHGGKSIPNVKE 173
Query: 324 NKAVGVMKVGQTFTIEPMINAGV 346
++ G IEP GV
Sbjct: 174 RDTT-KLEEGDVVAIEPFATDGV 195
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 68.4 bits (167), Expect = 1e-12
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 39/220 (17%)
Query: 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEI---------DRVVHEA---TIT 188
+IKTP+++E++R C IA + R I+ G++ EI + +A TI
Sbjct: 126 QIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFDTIV 185
Query: 189 AGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETY 248
A G+ L HG + + G+ V +D Y+G D+ T
Sbjct: 186 ASGWRGALP-----------------HGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTL 228
Query: 249 FVGNADEASRQ-----LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY 303
V ++ + Q + AIS ++PGVR +++ + R T +G+ +
Sbjct: 229 LVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGH 288
Query: 304 -CGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMI 342
GH IG H P +S ++ G T+EP I
Sbjct: 289 NTGHAIGIEVHED---PRFSPRDTT-TLQPGMLLTVEPGI 324
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 62.6 bits (153), Expect = 3e-11
Identities = 52/214 (24%), Positives = 84/214 (39%), Gaps = 30/214 (14%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
IE MR+ C I+ E AA + RPG++ E++ E + G +Y
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEF-EYEFRSRGARLAYSYI-----VAA 54
Query: 208 SVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYE 266
N I H + + + L+DGD+V ID Y G D+ T+ V G + R+L +
Sbjct: 55 GSNAAILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLA 114
Query: 267 CLEKAISIVKPGVRFREI----GEVINRH-----------ATMSGFSVVKSYCGHGIGEL 311
+ AI+ KPGV + +I V+ + + HG+G
Sbjct: 115 AQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHY 174
Query: 312 F----H-CAPNIPHYSRNKAVGVMKVGQTFTIEP 340
H + + R + ++ G TIEP
Sbjct: 175 LGLDVHDVGGYLRYLRRAR---PLEPGMVITIEP 205
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 62.0 bits (150), Expect = 1e-10
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 130 VEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA 189
V+ +S + IK+P +I+R+R++ I + A+++IR G T+ E+ A +
Sbjct: 83 VDSSSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVM-- 140
Query: 190 GGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYF 249
S HF + + IP + K GD++ D V G D+ T+
Sbjct: 141 ----SKSETHFSRFHLISVGADFSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFV 196
Query: 250 VGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVKSYCGHGI 308
VG E +R++ Q E +S+V PGV+ +++ + SG + + + GHG
Sbjct: 197 VGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGN 256
Query: 309 G 309
G
Sbjct: 257 G 257
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 62.4 bits (151), Expect = 1e-10
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 130 VEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA 189
V+ +S + IK+P +I+R+R++ I + A+++IR G T+ E+ A +
Sbjct: 166 VDSSSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVM-- 223
Query: 190 GGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYF 249
S HF + + IP + K GD++ D V G D+ T+
Sbjct: 224 ----SKSETHFSRFHLISVGADFSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFV 279
Query: 250 VGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVKSYCGHGI 308
VG E +R++ Q E +S+V PGV+ +++ + SG + + + GHG
Sbjct: 280 VGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGN 339
Query: 309 G 309
G
Sbjct: 340 G 340
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 60.9 bits (148), Expect = 4e-10
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 8/151 (5%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I+ A RPG+ +++ + HE YPS Y+
Sbjct: 173 FKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARYPS---YNT 229
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
S N I H + ++ DGD+V ID YKG GD+ T+ V G A R+
Sbjct: 230 IVGS---GENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQRE 286
Query: 260 LVQCTYECLEKAISIVKPGVRFREIGEVINR 290
+ E LE ++ + +PG RE+ + R
Sbjct: 287 IYDIVLESLETSLRLYRPGTSIREVTGEVVR 317
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 58.9 bits (142), Expect = 2e-09
Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 21/192 (10%)
Query: 126 GTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEA 185
G V+ + + IK+P +IE +R++ I + +AA+ IR G T E+ A
Sbjct: 161 GLKLVDSTALFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAA 220
Query: 186 TITAGGYPSPLNYHFFPKSCCTSVNEVICHG-------IPDSRKLEDGDIVNIDVTVYYK 238
++ FP++ + N +I G I D+ + GD++ D +
Sbjct: 221 VMS------------FPETNFSRFN-LISVGDNFSPKIIADTTPAKVGDLIKFDCGIDVA 267
Query: 239 GVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS 298
G DL T+ +G D+ ++Q+ E +S+V PGV+ + + + SG
Sbjct: 268 GYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSGLP 327
Query: 299 -VVKSYCGHGIG 309
+ + GHG G
Sbjct: 328 HYNRGHLGHGDG 339
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 53.4 bits (128), Expect = 8e-08
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 201 FPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA 256
FP C SVN + H P L++GD+V ID+ + G + T+ VG A E
Sbjct: 77 FPT--CISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEE 134
Query: 257 S-----RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGH 306
++ + E A+ +VKPG ++ E IN+ A G + V+ H
Sbjct: 135 PVTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVEGMLSH 189
Score = 28.3 bits (63), Expect = 7.4
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 158 AREVLDAAARMIRPGVT----TDEIDRVVH 183
A +AA R+++PG T T+ I++V H
Sbjct: 147 AHLAAEAALRLVKPGNTNTQVTEAINKVAH 176
>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog;
Provisional.
Length = 606
Score = 49.3 bits (118), Expect = 2e-06
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSS 73
V +PA LQC C++ KLP + C+ CF +W H+ +H +A A EN +
Sbjct: 66 SVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRVLHERA---ASAVRENGN 121
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 46.9 bits (112), Expect = 5e-06
Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 30/166 (18%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEI----DRVVHEATITAGGYPSPLNYH---F 200
+ + + +IA +VL + PG ++ D+++ E Y
Sbjct: 1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEEL--GKVYKKEKKLEKGIA 58
Query: 201 FPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVYYKGVHGD-----LNETYFVG 251
FP C SVN +CH P + L+DGD+V ID+ G H D + T VG
Sbjct: 59 FPT--CISVNNCVCHFSPLKSDATYTLKDGDVVKIDL-----GCHIDGYIAVVAHTIVVG 111
Query: 252 NADEASR-----QLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292
E ++ + LE A+ +++PG + +I E I +
Sbjct: 112 AEAETPVTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVI 157
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea.
Length = 228
Score = 46.8 bits (111), Expect = 6e-06
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 28/169 (16%)
Query: 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISI 274
H +RK++ GDI++++ G + L T F+ +A ++ + E+ + +
Sbjct: 69 HNPVTNRKVQRGDILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLEL 128
Query: 275 VKPGVRFREIGEVINRHATMSGFSVVKSY-CGHGIGELFHCAPNIPHYSRNKAV------ 327
+KPG R ++I +N +++ GH G L H +Y R +
Sbjct: 129 IKPGARCKDIAAELNEMYREHDLLRYRTFGYGHSFGVLSH------YYGREAGLELREDI 182
Query: 328 -GVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLV 375
V++ G ++EPMI M P+G A G R EH +LV
Sbjct: 183 DTVLEPGMVVSMEPMI--------MLPEGQPG--AGGYR----EHDILV 217
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 45.5 bits (108), Expect = 3e-05
Identities = 50/215 (23%), Positives = 79/215 (36%), Gaps = 35/215 (16%)
Query: 146 DQIERMRETCRIAREVLDAAARMIRPGVT----TDEIDRVVHEATITAGGYPSPLNYHFF 201
+Q + +R + R+V A +I+PGV + I+ E I A G F
Sbjct: 156 EQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRE-LIEADGLKCGWA---F 211
Query: 202 PKSCCTSVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVH--GDLNETYFVGNADEA 256
P C S+N H P D L D+ +D G H G + + F +
Sbjct: 212 PTGC--SLNHCAAHYTPNTGDKTVLTYDDVCKLDF-----GTHVNGRIIDCAFTVAFNPK 264
Query: 257 SRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV-----------VKSYCG 305
L+Q T + I VR +IG I + + V +++ G
Sbjct: 265 YDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQE--VIESYEVEIKGKTYPIKSIRNLNG 322
Query: 306 HGIGE-LFHCAPNIPHYSRNKAVGVMKVGQTFTIE 339
H IG + H ++P + M+ G+ F IE
Sbjct: 323 HSIGPYIIHGGKSVPIVKGGENT-RMEEGELFAIE 356
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 38.0 bits (88), Expect = 0.006
Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 18/176 (10%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATIT-----AGGYPS-- 194
+K+P +I MR RI + I PG+ ++ +++A I G YP+
Sbjct: 158 VKSPTEIAYMRIAARIVENMHQRIFERIEPGMRKCDLVAEIYDAGIRGADGFGGDYPAIV 217
Query: 195 PLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNAD 254
PL P + + H D ++ G+ ++ YK H L+ T F+G
Sbjct: 218 PL----LP----SGADASAPHLTWDDSPMKKGEGTFFEIAGCYKRYHCPLSRTVFLGKPT 269
Query: 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVK-SYCGHGIG 309
+A + E +E ++ KPG +I + + + K S G+ IG
Sbjct: 270 QAFLDAEKAVLEGMEAGLAAAKPGNTCEDIANAF--FKVLKKYGIHKDSRTGYPIG 323
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger.
Length = 39
Score = 33.9 bits (78), Expect = 0.007
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 15 CVRCGKPAH--LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58
C CGK A L+C +C +C+++C KA W HK
Sbjct: 1 CAVCGKEALKLLRCSRCK-------SVYYCSKECQKADWPYHKKEC 39
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 35.2 bits (82), Expect = 0.051
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 21/73 (28%)
Query: 144 TPDQIERMRETCRIAREVLDAAA------RMIRPG--VTTD-EIDRVVHEATITAGGYPS 194
T R+ R+ RE++ A R I PG V TD EID V E TA
Sbjct: 417 TEQDWREFRDAIRLTREIMAQPALDPYRGREISPGADVQTDEEIDAFVREHAETA----- 471
Query: 195 PLNYHFFPKSCCT 207
YH P CT
Sbjct: 472 ---YH--P--SCT 477
>gnl|CDD|176893 cd08884, RHO_alpha_C_GbcA-like, C-terminal catalytic domain of GbcA
(glycine betaine catabolism A) from Pseudomonas
aeruginosa PAO1 and related aromatic ring hydroxylating
dioxygenases. C-terminal catalytic domain of GbcA
(glycine betaine catabolism A) from Pseudomonas
aeruginosa PAO1 and related Rieske-type non-heme iron
aromatic ring-hydroxylating oxygenases (RHOs, also known
as aromatic ring hydroxylating dioxygenases). RHOs
utilize non-heme Fe(II) to catalyze the addition of
hydroxyl groups to the aromatic ring, an initial step in
the oxidative degradation of aromatic compounds. RHOs
are composed of either two or three protein components,
and are comprised of an electron transport chain (ETC)
and an oxygenase. The ETC transfers reducing equivalents
from the electron donor to the oxygenase component,
which in turn transfers electrons to the oxygen
molecules. The oxygenase components are oligomers,
either (alpha)n or (alpha)n(beta)n. The alpha subunits
are the catalytic components and have an N-terminal
domain, which binds a Rieske-like 2Fe-2S cluster, and a
C-terminal domain which binds the non-heme Fe(II). The
Fe(II) is co-ordinated by conserved His and Asp
residues. GbcA is involved in glycine betaine (GB)
catabolism in Pseudomonas aeruginosa; it may remove a
methyl group from GB via a dioxygenase mechanism,
producing dimethylglycine and formaldehyde. This
subfamily belongs to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket.
Length = 205
Score = 33.8 bits (78), Expect = 0.079
Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 23/97 (23%)
Query: 310 ELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRD-RM-WPDGWTAVTADGKRSA 367
E +HCA P +R+ + + +P +R R G + T DGK A
Sbjct: 31 ECYHCAGVHPELARS----LSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAVA 86
Query: 368 -----------------QFEHTLLVSAHTYYIFVHVF 387
+ H ++
Sbjct: 87 PPLPGLTEADDRGALYYTLYPNSFLHLHPDHVVTFRV 123
>gnl|CDD|224842 COG1931, COG1931, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 140
Score = 31.6 bits (72), Expect = 0.28
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG------GY 192
V E +T +ER+RE R + +LD A ++ G+T +E+ +++ G
Sbjct: 42 VGEGRTLKSLERLRELLR-KQRILDTARMVLEKGLTGNEVTFYLNKQAAYVGRVNFVEED 100
Query: 193 PSPL 196
SPL
Sbjct: 101 ESPL 104
>gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics].
Length = 132
Score = 30.6 bits (69), Expect = 0.68
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 176 DEIDRVVHEATITAGGYPSPLNYHFFPKS 204
+E+++++ + TI GG +N PKS
Sbjct: 93 EELNKLLGDVTIAQGGVLPNINPGLLPKS 121
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 30.5 bits (69), Expect = 1.3
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 225 DGDIVNIDVTVYYKGVHGDLNETYF-VGNADEASRQLVQ 262
D IV++D V Y+ D + + V NA+ A RQLVQ
Sbjct: 83 DNVIVSVDAVVQYRVT--DPQKAVYNVENAEAALRQLVQ 119
>gnl|CDD|234956 PRK01490, tig, trigger factor; Provisional.
Length = 435
Score = 30.9 bits (71), Expect = 1.4
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 217 IPDSRKLEDGDIVNIDVTVYYKGV 240
+P R E+GD V ID G
Sbjct: 152 VPVERPAENGDRVTIDFVGSIDGE 175
>gnl|CDD|234035 TIGR02860, spore_IV_B, stage IV sporulation protein B. SpoIVB, the
stage IV sporulation protein B of endospore-forming
bacteria such as Bacillus subtilis, is a serine
proteinase, expressed in the spore (rather than mother
cell) compartment, that participates in a proteolytic
activation cascade for Sigma-K. It appears to be
universal among endospore-forming bacteria and occurs
nowhere else [Cellular processes, Sporulation and
germination].
Length = 402
Score = 30.4 bits (69), Expect = 1.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 215 HGI--PDSRK---LEDGDIVNIDVTVYYKGVHG 242
H I D+ K +E+G IVN +T KG G
Sbjct: 220 HVITDIDTGKPISVENGQIVNSSITSIEKGRRG 252
>gnl|CDD|217823 pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes
2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is
required for propionate catabolism. It catalyzes the
third step of the 2-methylcitric acid cycle.
Length = 445
Score = 30.4 bits (69), Expect = 1.8
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 155 CRIAREVLDAAARMIRP-GVTTDEIDRVV---HEATITAGGYPSPLN 197
R A DAA + R G DEI+ + E I P
Sbjct: 267 ERHAHSAADAALALRREEGDRADEIESIEIETFEVAIRIINKRGPPA 313
>gnl|CDD|206093 pfam13922, PHD_3, PHD domain of transcriptional enhancer, Asx.
This is the DNA-binding domain on the additional sex
combs-like 1 proteins. The Asx protein acts as an
enhancer of trithorax and polycomb in displaying
bidirectional homoeotic phenotypes in Drosophila,
suggesting that it is required for maintenance of both
activation and silencing of Hox genes. Asx is required
for normal adult haematopoiesis and its function
depends on its cellular context.
Length = 64
Score = 27.5 bits (61), Expect = 2.5
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 1 MAGGSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKAS 50
G + AE T+ C C A + C +C AFC DC S
Sbjct: 17 NFSGENTAEATANKCA-CRLKAMVICQQC---------GAFCHDDCIGPS 56
>gnl|CDD|203013 pfam04438, zf-HIT, HIT zinc finger. This presumed zinc finger
contains up to 6 cysteine residues that could
coordinate zinc. The domain is named after the HIT
protein. This domain is also found in the Thyroid
receptor interacting protein 3 (TRIP-3) that
specifically interacts with the ligand binding domain
of the thyroid receptor.
Length = 30
Score = 26.4 bits (59), Expect = 2.5
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 8/34 (23%)
Query: 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFK 48
C CG P+ +CP+C G +C+ +C+K
Sbjct: 5 CSVCGNPSKYRCPRC--------GVRYCSLECYK 30
>gnl|CDD|227872 COG5585, COG5585, NAD+--asparagine ADP-ribosyltransferase [Signal
transduction mechanisms].
Length = 417
Score = 29.8 bits (67), Expect = 2.7
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 13/135 (9%)
Query: 156 RIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215
+ A +VL A G I R +H T+ + C V +
Sbjct: 177 KYANQVLKA------IGAKLSGITRQLH-GTVAGVKEAEVGEFPPVHPGCRNGFGGVKEN 229
Query: 216 GIPDSRKLED-----GDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEK 270
+ D + L+ D+ D+ Y K D NE + ++L + L+
Sbjct: 230 FVKDPKSLDQNPNIHDDLGKKDLKNYTKDPRADENEKLRQTQDRDLGKKLRKTGMPALKN 289
Query: 271 AISIVKPG-VRFREI 284
++P VR R+
Sbjct: 290 GEGQIRPKEVRIRKK 304
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved
proteins from bacteria to humans that generally catalyze
the transfer of gamma-phosphates of a nucleoside
triphosphate (NTP) donor onto a nucleoside diphosphate
(NDP) acceptor through a phosphohistidine intermediate.
The mammalian nm23/NDP kinase gene family can be divided
into two distinct groups. The group I genes encode
proteins that generally have highly homologous
counterparts in other organisms and possess the classic
enzymatic activity of a kinase. This group includes
vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its
counterparts in bacteria, archea and other eukaryotes.
NDP kinases exist in two different quaternary
structures; all known eukaryotic enzymes are hexamers,
while some bacterial enzymes are tetramers, as in
Myxococcus. They possess the NDP kinase active site
motif (NXXH[G/A]SD) and the nine residues that are most
essential for catalysis.
Length = 130
Score = 28.6 bits (65), Expect = 3.0
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 269 EKAISIVKP-GVRFREIGEVINR 290
E+ + I+KP GV+ IGE+I+R
Sbjct: 1 ERTLVIIKPDGVQRGLIGEIISR 23
>gnl|CDD|224978 COG2067, FadL, Long-chain fatty acid transport protein [Lipid
metabolism].
Length = 440
Score = 29.7 bits (67), Expect = 3.3
Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 23/107 (21%)
Query: 38 GAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFD 97
G A+ D + + V + K G S ++ G A
Sbjct: 225 GVAYEINDNNRIGLSYRSKVKMDFK------GGYESSLNLGMAGLPIGPLA--------- 269
Query: 98 WTGTLRPYPISSKLTVPAYIEL-------PDWALDGTPKVEPNSDLQ 137
G + P L++PA EL WA+ G+ K S
Sbjct: 270 -LGGVTPGSGKLTLSLPASAELSGQHKVADQWAIHGSVKWTDWSSFD 315
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domain found
associated with pfam00732.
Length = 139
Score = 28.1 bits (63), Expect = 4.9
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 125 DGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHE 184
G P ++PN P + +R R+AR +L AA + PG
Sbjct: 15 LGLPVIDPNYL-------SDPADLAALRAALRLARRILAAALVELTPGPVEVVPGAAEAS 67
>gnl|CDD|227919 COG5632, COG5632, N-acetylmuramoyl-L-alanine amidase [Cell envelope
biogenesis, outer membrane].
Length = 302
Score = 28.6 bits (64), Expect = 5.2
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 94 PHFDWTGTLRPYPISSKLTVPAY 116
H DW+G L P K A
Sbjct: 139 KHKDWSGKLCPARYLDKGRWDAV 161
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 28.9 bits (65), Expect = 5.6
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 149 ERMRETCRIAREVLDAAARM----IRPGVTTDEIDR------VVHEATITAGGYPSPLNY 198
+R R +A+ AA + +RPG + R A + G Y P+N+
Sbjct: 9 DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNW 68
Query: 199 HFFP 202
HF P
Sbjct: 69 HFKP 72
>gnl|CDD|232831 TIGR00115, tig, trigger factor. Trigger factor is a
ribosome-associated molecular chaperone and is the first
chaperone to interact with nascent polypeptide. Trigger
factor can bind at the same time as the signal
recognition particle (SRP), but is excluded by the SRP
receptor (FtsY). The central domain of trigger factor
has peptidyl-prolyl cis/trans isomerase activity. This
protein is found in a single copy in virtually every
bacterial genome [Protein fate, Protein folding and
stabilization].
Length = 408
Score = 28.7 bits (65), Expect = 5.7
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 219 DSRKLEDGDIVNIDVTVYYKGV 240
+ R E GD V ID + G
Sbjct: 143 ERRAAEKGDRVTIDFEGFIDGE 164
>gnl|CDD|222530 pfam14082, DUF4263, Domain of unknown function (DUF4263). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria, archaea,
eukaryotes and viruses. Proteins in this family are
typically between 244 and 403 amino acids in length.
Length = 162
Score = 28.0 bits (63), Expect = 6.0
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 130 VEPNSDLQHVVEIKTPDQ---IERMRETCRIAREVLDAAARMIR 170
+ +SD +VEIK P+ + R + E+ A ++++
Sbjct: 52 ADKDSDNLVLVEIKRPNTNLFTKTPRGNGAPSAELSGAISQILD 95
>gnl|CDD|188804 cd09420, LIM3_Prickle, The third LIM domain of Prickle. The
third LIM domain of Prickle: Prickle contains three
C-terminal LIM domains and a N-terminal PET domain.
Prickles have been implicated in roles of regulating
tissue polarity or planar cell polarity (PCP). PCP
establishment requires the conserved
Frizzled/Dishevelled PCP pathway. Prickle interacts
with Dishevelled, thereby modulating
Frizzled/Dishevelled activity and PCP signaling. Two
forms of prickles have been identified; namely prickle
1 and prickle 2. Prickle 1 and prickle 2 are
differentially expressed. While prickle 1 is expressed
in fetal heart and hematological malignancies, prickle
2 is found in fetal brain, adult cartilage, pancreatic
islet, and some types of timorous cells. LIM domains
are 50-60 amino acids in size and share two
characteristic zinc finger motifs. The two zinc fingers
contain eight conserved residues, mostly cysteines and
histidines, which coordinately bond to two zinc atoms.
LIM domains function as adaptors or scaffolds to
support the assembly of multimeric protein complexes.
Length = 59
Score = 26.2 bits (58), Expect = 6.2
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 8 AETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDC 46
A C +C K L P LP++G +C++ C
Sbjct: 26 ATEKCFCCAQCKKSL-LGRPF-----LPKQGQIYCSRAC 58
>gnl|CDD|233843 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'.
This family consists of the archaeal A' subunit of the
DNA-directed RNA polymerase. The example from
Methanocaldococcus jannaschii contains an intein.
Length = 867
Score = 28.9 bits (65), Expect = 6.5
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 26/68 (38%)
Query: 104 PYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLD 163
P I+ +LTVP + TP I+ +RE +
Sbjct: 338 PEQIAKELTVPERV--------------------------TPWNIDELREYVLNGPDSWP 371
Query: 164 AAARMIRP 171
A +IRP
Sbjct: 372 GANYVIRP 379
>gnl|CDD|129632 TIGR00541, hisDCase_pyru, histidine decarboxylase, pyruvoyl type.
This enzyme converts histadine to histamine in a single
step by catalyzing the release of CO2. This type is
synthesized as an inactive single chain precursor, then
cleaved into two chains. The Ser at the new N-terminus
at the cleavage site is converted to a pyruvoyl group
essential for activity. This type of histidine
decarboxylase appears is known so far only in some
Gram-positive bacteria, where it may play a role in
amino acid catabolism. There is also a pyridoxal
phosphate type histidine decarboxylase, as found in
human, where histamine is a biologically active amine
[Energy metabolism, Amino acids and amines].
Length = 310
Score = 28.4 bits (63), Expect = 6.9
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERM 151
+ P I + +T Y+ L A+ G + P+ D + + I P+ ++ M
Sbjct: 250 MEPGEIGNAITCAPYVSLAIDAIPGGSILTPDEDFEILENISLPEWLDDM 299
>gnl|CDD|225971 COG3437, COG3437, Response regulator containing a CheY-like
receiver domain and an HD-GYP domain [Transcription /
Signal transduction mechanisms].
Length = 360
Score = 28.1 bits (63), Expect = 8.8
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 131 EPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHE 184
P+S L T ++ E M+ + E+L ++ R+++ EI R HE
Sbjct: 228 IPDSIL-LKPGKLTSEEFEIMKGHPILGAEILKSSERLMQVAA---EIARHHHE 277
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.432
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,695,699
Number of extensions: 1867866
Number of successful extensions: 1987
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1913
Number of HSP's successfully gapped: 62
Length of query: 390
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 291
Effective length of database: 6,546,556
Effective search space: 1905047796
Effective search space used: 1905047796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)