Citrus Sinensis ID: 016391

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
Protein Sequence
MSSMMEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSGGSISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPTLEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQPEAVRLNPARLSSSLYGPEESMISFDLGATQDCHSALSLLSKTSWGICEPKKVSQQHPTSTSLTNIPHAVMPAMAQGSPFASSEYRQMGKLSTEFQVHASSFHQDEGNYSQEIQLFRAPYESDFYPTVD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHcccHHHHHHcccccccccccEEEEccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHccEHHHcccccEEEEcccHHHHHHHcHHHccHHHHcHccHHHHHHHHcHHHHccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccc
Coil and Loop (DISEMBL)
mssmmewngktplqwdwENLIMFNAtaaenprktrqieweidgdggidstsffssgggdgsggsisdmGLASLSkssksasnnsssmgetktskfrLEASDDVLEDFDLKKefakaeptggsptleasvgsgepllglklgkrmyfedisaggngknssfpavcgsystsakrsrsnpqtTQAALCQVEgcgldlssakdyhrkhrvcenhskspkvivGGLERRFCQqcsrfhglsefdekKRSCRRRLSdhnarrrksqpeavrlnparlssslygpeesmisfdlgatQDCHSALSLlsktswgicepkkvsqqhptstsltniphavmpamaqgspfasseyrqmgklstEFQVHASsfhqdegnysQEIQLfrapyesdfyptvd
Flexible Loop (DISEMBL)
MSSMMEWNGKTPLQWDWENLIMFNATaaenprktRQIEWEIDGDGGIDSTSFFSSGGGDGSGGSISDMGLASLSKSsksasnnsssmgetktskfrleASDDVLEDFDLKKEfakaeptggsptleasvgsgEPLLGLKLGKRMYFEDISaggngknssfpAVCGSYStsakrsrsnPQTTQAALCQVEGCGLDLSSAKDYHRkhrvcenhskspkvivgGLERRFCQQCSrfhglsefdekkrscrrrlsdhnarrrksqpeavrlnparlssslygPEESMISFDLGATQDCHSALSLLSKTSWGICEPKKVSQQHPTSTSLTNIPHAVMPAMAQGSPFASSEYRQMGKLSTEFQVHASSFHQDEGNYSQEIQLfrapyesdfyptvd
Low Complexity Region (SEG)
MSSMMEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEidgdggidstsffssgggdgsggsisdMGlaslskssksasnnsssMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPTLEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQPEAVRLNPARLSSSLYGPEESMISFDLGATQDCHSALSLLSKTSWGICEPKKVSQQHPTSTSLTNIPHAVMPAMAQGSPFASSEYRQMGKLSTEFQVHASSFHQDEGNYSQEIQLFRAPYESDFYPTVD
Disordered region (IsUnstruct)
********GKTPLQWDWENLIMFNATAA********IEWEI**********************************************************************************************LGLKLGKRMYFEDI**********************************ALCQVEGCGLDLSSAKDYHRKHRVCEN***SPKVIVGGLERRFCQQCSRFHGL***********************************************ISFDLGATQDCHSALSLLSKTSWGIC******************************************************************LF*************
Disordered Region (DISOPRED)
********GKTPLQWDWENLIMF*******************************************************************************************************************KLGKRMYF****************************************QVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSC***********************************************************************************************************************************RAPYES**YPT**
Disordered Region (DISEMBL)
********GKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSGGSISDMGLAS*********************KFRLEASDDVLEDFDLKKEFAK************SVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVC******************AALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEF************************AVRLNPARLSSSLYGPEESMISFDLGATQDCHSALSLLSKTSWGICEP**********TSLTNIPHAVMPAMAQGSPFASSEYRQMGKLSTEFQVHASSFHQDEGNYSQEIQLFRAPYESDFYPTVD
Disordered Region (DISPRO)
***********PLQWDWENLIMFNATA******T*QIEWEIDGDGGIDSTSFF*******************************************************************************EPLLGLKLGKRMYFEDI********************************QAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRR*************************************************************************************************************************SQEIQLFRAPYESDFYPTVD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSMMEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSGGSISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPTLEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQPEAVRLNPARLSSSLYGPEESMISFDLGATQDCHSALSLLSKTSWGICEPKKVSQQHPTSTSLTNIPHAVMPAMAQGSPFASSEYRQMGKLSTEFQVHASSFHQDEGNYSQEIQLFRAPYESDFYPTVD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	390	2.2.26 [Sep-21-2011]
Q9S840	419	Squamosa promoter-binding	yes	no	0.623	0.579	0.557	4e-65
A2YGR5	475	Squamosa promoter-binding	N/A	no	0.682	0.56	0.457	9e-58
Q5Z818	475	Squamosa promoter-binding	yes	no	0.682	0.56	0.457	1e-57
A3A2Z8	469	Squamosa promoter-binding	no	no	0.715	0.594	0.479	3e-56
A2X0Q6	469	Squamosa promoter-binding	N/A	no	0.715	0.594	0.479	3e-56
Q8S9L0	396	Squamosa promoter-binding	no	no	0.641	0.631	0.476	2e-50
Q9FZK0	393	Squamosa promoter-binding	no	no	0.664	0.659	0.486	6e-50
Q6H509	251	Squamosa promoter-binding	no	no	0.258	0.402	0.683	5e-35
Q9M2Q6	354	Squamosa promoter-binding	no	no	0.448	0.494	0.429	6e-34
Q94JW8	405	Squamosa promoter-binding	no	no	0.238	0.229	0.655	7e-31

>sp|Q9S840|SPL2_ARATH Squamosa promoter-binding-like protein 2 OS=Arabidopsis thaliana GN=SPL2 PE=2 SV=1

 Score =  248 bits (634), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 145/260 (55%), Positives = 164/260 (63%), Gaps = 17/260 (6%)

Query: 5   MEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSG-GGDGSGG 63
           ME N K P QW+ ENLI F  + AE PRK + +EWEIDG    D TS +SS     GS G
Sbjct: 1   MECNAKPPFQWELENLISFGTSTAEVPRKLKPMEWEIDG---FDCTSLYSSSFAYAGSSG 57

Query: 64  SISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSP 123
           S     +A     S  +++ SSS  E +T  F  E  +       L  EFAK   T  SP
Sbjct: 58  S----DIAHAFSKSSKSTSISSSSAEVRTHNFTSETGES------LPGEFAKGIDT--SP 105

Query: 124 TLEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSN-PQTTQ 182
           +LE S GSG+P+LGLKLGKR YFED     N K    P    S S S  +   + PQ  Q
Sbjct: 106 SLELSFGSGDPVLGLKLGKRTYFEDFWEVENAKGLGLPVTLASSSVSPVKKSKSIPQRLQ 165

Query: 183 AALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEK 242
              CQVEGC LDLSSAKDYHRKHR+CENHSK PKV+V G+ERRFCQQCSRFH LSEFDEK
Sbjct: 166 TPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEK 225

Query: 243 KRSCRRRLSDHNARRRKSQP 262
           KRSCRRRLSDHNARRRK  P
Sbjct: 226 KRSCRRRLSDHNARRRKPNP 245

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Arabidopsis thaliana (taxid: 3702)

>sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1

 Score =  224 bits (571), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 125/273 (45%), Positives = 167/273 (61%), Gaps = 7/273 (2%)

Query: 5   MEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSGGS 64
           M WN K+P+ WDWEN   F     ENP+     E       G+   +          G  
Sbjct: 6   MNWNQKSPVFWDWENPAPFGPNTMENPKSIPHPEPR-----GVVVAAANHGSTNSSGGTF 60

Query: 65  ISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPT 124
            S   LA+ S  S  +++  SS     + +FR  +     ++     E  + E +G SP 
Sbjct: 61  TSSSELANGSSKSSLSASFDSSSKLGNSLEFRFASVKGHGKNMCKDGEAGRVEDSGTSPA 120

Query: 125 LEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQAA 184
           +  +V  GEP++GLKLGKR YFE++  G N K+SS  +     ST  K+ + + Q+TQ++
Sbjct: 121 V--AVSHGEPVIGLKLGKRTYFENVCGGQNVKSSSAASGVTCPSTVVKKMKVSQQSTQSS 178

Query: 185 LCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKR 244
            CQVEGC +DLSSA++YHRKH+VCE HSK+PKVIV GLERRFCQQCSRFHGL+EFD+KK+
Sbjct: 179 YCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKK 238

Query: 245 SCRRRLSDHNARRRKSQPEAVRLNPARLSSSLY 277
           SCRRRLSDHNARRRK Q EA+    +RL++  Y
Sbjct: 239 SCRRRLSDHNARRRKPQQEAISFGSSRLATMFY 271

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5Z818|SPL12_ORYSJ Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. japonica GN=SPL12 PE=2 SV=1

 Score =  224 bits (570), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 125/273 (45%), Positives = 167/273 (61%), Gaps = 7/273 (2%)

Query: 5   MEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSGGS 64
           M WN K+P+ WDWEN   F     ENP+     E       G+   +          G  
Sbjct: 6   MNWNQKSPVFWDWENPAPFGPNTMENPKSIPHPEPR-----GVVVAAANHGSTNSSGGTF 60

Query: 65  ISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPT 124
            S   LA+ S  S  +++  SS     + +FR  +     ++     E  + E +G SP 
Sbjct: 61  TSSSELANGSSKSSLSASFDSSSKLGNSLEFRFASVKGHGKNMCKDGEAGRVEDSGTSPA 120

Query: 125 LEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQAA 184
           +  +V  GEP++GLKLGKR YFE++  G N K+SS  +     ST  K+ + + Q+TQ++
Sbjct: 121 V--AVSHGEPVIGLKLGKRTYFENVCGGQNVKSSSAASGVTCPSTVVKKMKVSQQSTQSS 178

Query: 185 LCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKR 244
            CQVEGC +DLSSA++YHRKH+VCE HSK+PKVIV GLERRFCQQCSRFHGL+EFD+KK+
Sbjct: 179 YCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKK 238

Query: 245 SCRRRLSDHNARRRKSQPEAVRLNPARLSSSLY 277
           SCRRRLSDHNARRRK Q EA+    +RL++  Y
Sbjct: 239 SCRRRLSDHNARRRKPQQEAISFGSSRLATMFY 271

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A3A2Z8|SPL3_ORYSJ Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. japonica GN=SPL3 PE=2 SV=1

 Score =  219 bits (558), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 137/286 (47%), Positives = 175/286 (61%), Gaps = 7/286 (2%)

Query: 5   MEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSGGS 64
           M+WN K+ + WDWEN+     +A ENP+     E ++ G G +D     S     G+  S
Sbjct: 6   MDWNQKSSVLWDWENMPPIGNSANENPKNVMLAESKLAGVG-VD-IGHESGHSSGGTFSS 63

Query: 65  ISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPT 124
            S++G  S   S  ++ ++ S +G T      L  +     D ++ K  +K + TG S +
Sbjct: 64  SSEIGYGSSKSSISASIDSPSKVGNT----IELNFASAEEHDKNMDKGKSKVDDTGTSRS 119

Query: 125 LEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNS-SFPAVCGSYSTSAKRSRSNPQTTQA 183
              +    EPL+GLKLGKR YFED+  G N K+S S  +V       AK+ +   Q TQ 
Sbjct: 120 PVVAANRVEPLIGLKLGKRTYFEDVCGGQNVKSSPSGVSVATPSPGLAKKVKVAQQNTQN 179

Query: 184 ALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKK 243
             CQVEGC +DLSSAK YHRKHRVCE HSK+ KVIV GLERRFCQQCSRFHGL+EFD+KK
Sbjct: 180 PHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKK 239

Query: 244 RSCRRRLSDHNARRRKSQPEAVRLNPARLSSSLYGPEESMISFDLG 289
           RSCRRRL DHNARRRK QPEA+ L+ +RLS+ LYG      SF  G
Sbjct: 240 RSCRRRLHDHNARRRKPQPEAISLSSSRLSTLLYGDARQQASFLFG 285

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2X0Q6|SPL3_ORYSI Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. indica GN=SPL3 PE=2 SV=1

 Score =  219 bits (558), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 137/286 (47%), Positives = 175/286 (61%), Gaps = 7/286 (2%)

Query: 5   MEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSGGS 64
           M+WN K+ + WDWEN+     +A ENP+     E ++ G G +D     S     G+  S
Sbjct: 6   MDWNQKSSVLWDWENMPPIGNSANENPKNVMLAESKLAGVG-VD-IGHESGHSSGGTFSS 63

Query: 65  ISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPT 124
            S++G  S   S  ++ ++ S +G T      L  +     D ++ K  +K + TG S +
Sbjct: 64  SSEIGYGSSKSSISASIDSPSKVGNT----IELNFASAEEHDKNMDKGKSKVDDTGTSRS 119

Query: 125 LEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNS-SFPAVCGSYSTSAKRSRSNPQTTQA 183
              +    EPL+GLKLGKR YFED+  G N K+S S  +V       AK+ +   Q TQ 
Sbjct: 120 PVVAANRVEPLIGLKLGKRTYFEDVCGGQNVKSSPSGVSVATPSPGLAKKVKVAQQNTQN 179

Query: 184 ALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKK 243
             CQVEGC +DLSSAK YHRKHRVCE HSK+ KVIV GLERRFCQQCSRFHGL+EFD+KK
Sbjct: 180 PHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKK 239

Query: 244 RSCRRRLSDHNARRRKSQPEAVRLNPARLSSSLYGPEESMISFDLG 289
           RSCRRRL DHNARRRK QPEA+ L+ +RLS+ LYG      SF  G
Sbjct: 240 RSCRRRLHDHNARRRKPQPEAISLSSSRLSTLLYGDARQQASFLFG 285

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8S9L0|SPL10_ARATH Squamosa promoter-binding-like protein 10 OS=Arabidopsis thaliana GN=SPL10 PE=2 SV=2

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/258 (47%), Positives = 155/258 (60%), Gaps = 8/258 (3%)

Query: 5   MEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSGGS 64
           M+ N  +   WDWENLIM N +  EN +K +  EWE +   GI+S      G    S GS
Sbjct: 1   MDCNMVSSFPWDWENLIMSNQSKTENEKKQQSTEWEFEKGEGIESIVPDFLGFEKVSSGS 60

Query: 65  ISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPT 124
            +     ++SKSS+S S NSSS  + + +     +  D   + D    F + +P   S  
Sbjct: 61  ATSFWHTAVSKSSQSTSINSSSPEDKRCNLASQSSPGDSSSNID----FLQVKP---STA 113

Query: 125 LEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSA-KRSRSNPQTTQA 183
           LE  + S E  L LKLGKR Y E+     N   S+      + S  A K+++S  Q+ Q 
Sbjct: 114 LEVPIASAESDLCLKLGKRTYSEEFWGRNNNDLSAVSMNLLTPSVVARKKTKSCGQSMQV 173

Query: 184 ALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKK 243
             CQ++GC LDLSS+KDYHRKHRVCE HSK PKV+V GLERRFCQQCSRFH +SEFDEKK
Sbjct: 174 PRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKK 233

Query: 244 RSCRRRLSDHNARRRKSQ 261
           RSCR+RLS HNARRRK Q
Sbjct: 234 RSCRKRLSHHNARRRKPQ 251

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZK0|SPL11_ARATH Squamosa promoter-binding-like protein 11 OS=Arabidopsis thaliana GN=SPL11 PE=2 SV=2

 Score =  198 bits (503), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 131/269 (48%), Positives = 159/269 (59%), Gaps = 10/269 (3%)

Query: 5   MEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSGGS 64
           M+ N  +  QWDWE+LIM N +  E+  K    EWEI+   GI+S     SG    S GS
Sbjct: 1   MDCNMVSSSQWDWEHLIMSNPSRTEDDSKQLPTEWEIEKGEGIESIVPHFSGLERVSSGS 60

Query: 65  ISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASD-DVLEDFDLKKEFAKAEPTGGSP 123
            +     ++SKSS+S S NSSS  E K  K   E+S  D   + D  +  A   PT    
Sbjct: 61  ATSFWHTAVSKSSQSTSINSSS-PEAKRCKLASESSPGDSCSNIDFVQVKA---PTA--- 113

Query: 124 TLEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQA 183
            LE SV S E  L LKLGKR Y E+     N + S+      + S  A +S+   Q+   
Sbjct: 114 -LEVSVASAESDLCLKLGKRTYSEEYWGRNNNEISAVSMKLLTPSVVAGKSKLCGQSMPV 172

Query: 184 ALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKK 243
             CQ++GC LDLSSAK YHRKH+VCE HSK PKV V GLERRFCQQCSRFH +SEFDEKK
Sbjct: 173 PRCQIDGCELDLSSAKGYHRKHKVCEKHSKCPKVSVSGLERRFCQQCSRFHAVSEFDEKK 232

Query: 244 RSCRRRLSDHNARRRKSQPEAVRLNPARL 272
           RSCR+RLS HNARRRK Q     +NP R+
Sbjct: 233 RSCRKRLSHHNARRRKPQG-VFSMNPERV 260

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6H509|SPL4_ORYSJ Squamosa promoter-binding-like protein 4 OS=Oryza sativa subsp. japonica GN=SPL4 PE=2 SV=1

 Score =  149 bits (375), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 69/101 (68%), Positives = 76/101 (75%)

Query: 186 CQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRS 245
           CQVEGCG++L   KDYHRKHRVCE HSK P+V+V G ERRFCQQCSRFH LSEFD+KKRS
Sbjct: 68  CQVEGCGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKKRS 127

Query: 246 CRRRLSDHNARRRKSQPEAVRLNPARLSSSLYGPEESMISF 286
           CRRRL DHNARRRK Q +      AR  SSL   +   ISF
Sbjct: 128 CRRRLYDHNARRRKPQTDVFSYASARPPSSLLFDDNRQISF 168

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M2Q6|SPL15_ARATH Squamosa promoter-binding-like protein 15 OS=Arabidopsis thaliana GN=SPL15 PE=2 SV=1

 Score =  145 bits (365), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 88/205 (42%), Positives = 115/205 (56%), Gaps = 30/205 (14%)

Query: 138 LKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQAALCQVEGCGLDLSS 197
           L+ G+++YFED                GS S S  R  +  +++  A CQVEGC +DLS+
Sbjct: 27  LRFGQKIYFED----------------GSGSRSKNRVNTVRKSSTTARCQVEGCRMDLSN 70

Query: 198 AKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARR 257
            K Y+ +H+VC  HSKS KVIV GL +RFCQQCSRFH LSEFD +KRSCRRRL+ HN RR
Sbjct: 71  VKAYYSRHKVCCIHSKSSKVIVSGLHQRFCQQCSRFHQLSEFDLEKRSCRRRLACHNERR 130

Query: 258 RKSQPEAVRLNP--ARLSSSLYG-PEESMISFDLGATQDCHSALSLLSKT-SWGICEPKK 313
           RK QP         +R++ SLYG P  +MI   LG      +A S++ +   W I     
Sbjct: 131 RKPQPTTALFTSHYSRIAPSLYGNPNAAMIKSVLGDPTAWSTARSVMQRPGPWQI---NP 187

Query: 314 VSQQHPT-------STSLTNIPHAV 331
           V + HP        S+S T  P  +
Sbjct: 188 VRETHPHMNVLSHGSSSFTTCPEMI 212

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JW8|SPL6_ARATH Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2

 Score =  135 bits (339), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 75/93 (80%)

Query: 167 YSTSAKRSRSNPQTTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRF 226
           ++  +K+SR++   +Q  LCQV GC  DLSS+KDYH++HRVCE HSK+  VIV GLE+RF
Sbjct: 105 FALPSKKSRASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRF 164

Query: 227 CQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRK 259
           CQQCSRFH LSEFD+ KRSCRRRL+ HN RRRK
Sbjct: 165 CQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRK 197

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
225425402	477	PREDICTED: squamosa promoter-binding-lik	0.715	0.584	0.672	7e-92
147807238	496	hypothetical protein VITISV_001736 [Viti	0.938	0.737	0.528	1e-90
255547696	483	LIGULELESS1 protein, putative [Ricinus c	0.715	0.577	0.707	1e-85
444436392	488	SPL2-like protein [Eucalyptus cladocalyx	0.694	0.555	0.619	6e-80
242390089	485	transcription factor squamosa promoter b	0.694	0.558	0.615	5e-79
356565929	436	PREDICTED: squamosa promoter-binding-lik	0.715	0.639	0.552	6e-69
312282803	422	unnamed protein product [Thellungiella h	0.628	0.580	0.571	9e-69
363806996	443	uncharacterized protein LOC100796013 [Gl	0.794	0.699	0.512	4e-67
357462971	460	Squamosa promoter-binding-like protein [	0.651	0.552	0.570	6e-67
359484914	506	PREDICTED: LOW QUALITY PROTEIN: promoter	0.687	0.529	0.516	3e-65

>gi|225425402|ref|XP_002271312.1| PREDICTED: squamosa promoter-binding-like protein 12-like [Vitis vinifera]

 Score =  343 bits (881), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 189/281 (67%), Positives = 219/281 (77%), Gaps = 2/281 (0%)

Query: 3   SMMEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSG 62
           SMMEWN K P+QWDWENL +FNA + E P+K  Q +WEI+G+GGID+ SF+SSG G GSG
Sbjct: 5   SMMEWNAKAPVQWDWENLDIFNAKSTEIPKKL-QSDWEIEGEGGIDTGSFYSSGCGAGSG 63

Query: 63  GSISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGS 122
           GS SD+G A  SKSSKSAS +SSS    KTS F  EA  D  +DF+ K++  +AEPTG S
Sbjct: 64  GSGSDLGHAYSSKSSKSASIDSSSKVGIKTSNFTFEAFQDFSQDFNKKRDLERAEPTGSS 123

Query: 123 PTLEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQ 182
           P LEAS+GSGEPL+GLKLGKR YFED+SAG N K S F  +  S  T+AKRSR + Q   
Sbjct: 124 PNLEASIGSGEPLIGLKLGKRTYFEDVSAGANAKGSVFSVIPISSDTTAKRSRLSCQNAH 183

Query: 183 AALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEK 242
            + CQVEGC LDLS+AKDYHRKHRVCE+H+K PKVIVGGLERRFCQQCSRFH LSEFDEK
Sbjct: 184 VSRCQVEGCNLDLSTAKDYHRKHRVCESHTKCPKVIVGGLERRFCQQCSRFHSLSEFDEK 243

Query: 243 KRSCRRRLSDHNARRRKSQPEAVRLNPARLSSSLYGPEESM 283
           KRSCRRRLSDHNARRRK QPE ++ N ARL SS YG ++ M
Sbjct: 244 KRSCRRRLSDHNARRRKPQPEGIQSNSARL-SSFYGGKQQM 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807238|emb|CAN77427.1| hypothetical protein VITISV_001736 [Vitis vinifera]

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 213/403 (52%), Positives = 262/403 (65%), Gaps = 37/403 (9%)

Query: 15  WDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSGGSISDMGLASLS 74
           WDWENL +FNA + E P+K  Q +WEI+G+GGID+ SF+SSG G GSGGS SD+G A  S
Sbjct: 74  WDWENLDIFNAKSTEIPKKL-QSDWEIEGEGGIDTGSFYSSGCGAGSGGSGSDLGHAYSS 132

Query: 75  KSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPTLEASVGSGEP 134
           KSSKSAS +SSS    KTS F  EA  D  +DF+ K++  +AEPTG SP LEAS+GSGEP
Sbjct: 133 KSSKSASIDSSSKVGIKTSNFTFEAFQDFSQDFNKKRDLERAEPTGSSPNLEASIGSGEP 192

Query: 135 LLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQAALCQVEGCGLD 194
           L+GLKLGKR YFED+SAGGN K S F  +  S  T+AKRSR + Q    + CQVEGC LD
Sbjct: 193 LIGLKLGKRTYFEDVSAGGNAKGSVFSVIPISSDTTAKRSRLSCQNAHVSRCQVEGCNLD 252

Query: 195 LSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHN 254
           LS+AKDYHRKHRVCE+H+K PKVIVGGLERRFCQQCSRFH LSEFDEKKRSCRRRLSDHN
Sbjct: 253 LSTAKDYHRKHRVCESHTKCPKVIVGGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHN 312

Query: 255 ARRRKSQPEAVRLNPARLSSSLYGPEESMISFDLGATQDCHSALSLLSKTSW-------- 306
           ARRRK QPE ++ N ARL SS YG ++ M S  L +    H+  ++    SW        
Sbjct: 313 ARRRKPQPEGIQSNSARL-SSFYGGKQQM-SLVLSSVPIVHTRPAV--NPSWEGTCSKFT 368

Query: 307 ---GICEPKKVS----QQHPTSTSLTN-----------IPHA------VMPAMAQGSPFA 342
              G+  P        Q H   + L N           + H+      V+  ++QG   +
Sbjct: 369 QTKGLVRPGNTGGIDRQLHLPGSELQNGISTLCHDSSRLLHSKGAIAEVLNQVSQGMLHS 428

Query: 343 SSEYRQMGKLSTEFQVHASSFHQDEGNYSQEIQLFRAPYESDF 385
           +SE+ +    ST+ +VH      D   + QE +LF+APYES F
Sbjct: 429 TSEHWRTELPSTDSRVHILPSQGDGNTHFQEFKLFKAPYESGF 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547696|ref|XP_002514905.1| LIGULELESS1 protein, putative [Ricinus communis] gi|223545956|gb|EEF47459.1| LIGULELESS1 protein, putative [Ricinus communis]

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 203/287 (70%), Positives = 227/287 (79%), Gaps = 8/287 (2%)

Query: 3   SMMEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSG 62
           S+MEWN K P+QWDWENLIMFN T  ENP+K R  EWEIDG+ GIDS S +SSG G GSG
Sbjct: 5   SLMEWNTKPPIQWDWENLIMFNTTT-ENPKKLRVTEWEIDGEKGIDSGSIYSSGSGSGSG 63

Query: 63  GSIS--DMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTG 120
              S  D+GLASLSKSSKSAS NSSS+GE KTS F  EAS+   EDF+ KK F  A+PTG
Sbjct: 64  SGGSGSDLGLASLSKSSKSASINSSSIGEVKTSNFTFEASE-ATEDFNNKKAFT-AKPTG 121

Query: 121 GSPTLEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFP-AVCGSYSTSAKRSRSNPQ 179
            S T+EASVGSGEPLLGLKLGKR YFED+ AG N K+SSF  A+ GS  +  KRS+S+ Q
Sbjct: 122 TSSTIEASVGSGEPLLGLKLGKRTYFEDVCAGSNIKSSSFSSAIPGSSISPPKRSKSSSQ 181

Query: 180 TTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEF 239
            +    CQVEGC LDLSSAKDYHRKHRVCENHSK PKVIV GLERRFCQQCSRFHGLSEF
Sbjct: 182 ASSTPRCQVEGCNLDLSSAKDYHRKHRVCENHSKCPKVIVAGLERRFCQQCSRFHGLSEF 241

Query: 240 DEKKRSCRRRLSDHNARRRKSQPEAVRLNPARLSSSLYG--PEESMI 284
           DEKKRSCRRRLSDHNARRRK QPE++++N ARLSSS Y   P  S++
Sbjct: 242 DEKKRSCRRRLSDHNARRRKPQPESIQMNSARLSSSSYDERPHMSLV 288

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444436392|gb|AGE09564.1| SPL2-like protein [Eucalyptus cladocalyx]

 Score =  304 bits (778), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 174/281 (61%), Positives = 198/281 (70%), Gaps = 10/281 (3%)

Query: 3   SMMEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFF--SSGGGDG 60
           S+MEWN K PLQW+WENL+MF + A E  +  R  +W I+ +  ID  S F   +GGG  
Sbjct: 5   SLMEWNAKPPLQWEWENLMMFGSKATETSKPLRATDWGIEAEELIDPGSLFLYENGGGSS 64

Query: 61  SGGSISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDL---KKEFAKAE 117
           S  SI D G  S+SKSSKSAS NSSS  E K SKF +EA     E F L   KKE A  +
Sbjct: 65  SCTSI-DPGYTSVSKSSKSASVNSSSTDELKISKFSVEAH----EGFSLQSSKKELAVND 119

Query: 118 PTGGSPTLEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSN 177
            TG SP LE SV SGEPLL LKLGKR+YFE+     + K    P+V  S  T AKR++SN
Sbjct: 120 FTGMSPALEPSVCSGEPLLSLKLGKRIYFENTIDKDHVKTQDLPSVMKSPDTPAKRNKSN 179

Query: 178 PQTTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLS 237
            Q T A  CQVEGC LDLSSAKDYHRKHRVCE+HSK PKVIV G+ERRFCQQCSRFHGLS
Sbjct: 180 CQGTSAPRCQVEGCNLDLSSAKDYHRKHRVCESHSKCPKVIVSGIERRFCQQCSRFHGLS 239

Query: 238 EFDEKKRSCRRRLSDHNARRRKSQPEAVRLNPARLSSSLYG 278
           EFDEKKRSCR+RLSDHNARRRK  P+  +LNPARLS+  YG
Sbjct: 240 EFDEKKRSCRKRLSDHNARRRKPPPDVTQLNPARLSALFYG 280

Source: Eucalyptus cladocalyx

Species: Eucalyptus cladocalyx

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242390089|dbj|BAH80551.1| transcription factor squamosa promoter binding protein-like [Eucalyptus grandis]

 Score =  300 bits (769), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 173/281 (61%), Positives = 197/281 (70%), Gaps = 10/281 (3%)

Query: 3   SMMEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFF--SSGGGDG 60
           S+MEWN K PLQW+WENL+MF + A E  +  R  +W I+ +  ID  S F   +GGG  
Sbjct: 5   SLMEWNAKPPLQWEWENLMMFGSKATETSKPLRATDWGIEAEELIDPGSLFPYENGGGSS 64

Query: 61  SGGSISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDL---KKEFAKAE 117
           S  SI D G  S+SKSSKSAS NSSS  E K SKF +EA     E F L   KK  A  +
Sbjct: 65  SCTSI-DPGYTSVSKSSKSASVNSSSTDELKISKFSVEAH----EGFSLQSSKKGLAVND 119

Query: 118 PTGGSPTLEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSN 177
            TG SP LE SV SGEPLL LKLGKR+YFE+     + K    P+V  S  T AKR++SN
Sbjct: 120 FTGMSPALEPSVCSGEPLLSLKLGKRIYFENTIDKDHVKTQDLPSVMKSPDTPAKRNKSN 179

Query: 178 PQTTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLS 237
            Q T A  CQVEGC LDLSSAKDYHRKHRVCE+HSK PKVIV G+ERRFCQQCSRFHGLS
Sbjct: 180 CQGTSAPRCQVEGCNLDLSSAKDYHRKHRVCESHSKCPKVIVSGIERRFCQQCSRFHGLS 239

Query: 238 EFDEKKRSCRRRLSDHNARRRKSQPEAVRLNPARLSSSLYG 278
           EFDEKKRSCR+RLSDHNARRRK  P+  +LNPARLS+  YG
Sbjct: 240 EFDEKKRSCRKRLSDHNARRRKPPPDVTQLNPARLSALFYG 280

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565929|ref|XP_003551188.1| PREDICTED: squamosa promoter-binding-like protein 12-like [Glycine max]

 Score =  267 bits (683), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 167/302 (55%), Positives = 200/302 (66%), Gaps = 23/302 (7%)

Query: 5   MEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSGGS 64
           MEWN K+  QWDWE+L  FN  AAENPR  +  +   + D  I+    + SGG   SG  
Sbjct: 1   MEWNAKSLGQWDWEHL-FFNTKAAENPR-LQPTDCSSEADPEINVGLLYPSGGSACSG-- 56

Query: 65  ISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPT 124
            S++  AS S+SSKSASNNSSS G+++ S   LE S D   D   KKE    EP   SP 
Sbjct: 57  -SELIHASSSRSSKSASNNSSSNGDSRESILTLEGSQD---DSTGKKELCNGEPVETSPA 112

Query: 125 LEASVGSGEPLLGLKLGKRMYFEDISAGGNGKN-SSF--PAVCGSYSTSAKRSRSNPQTT 181
              S  SGEPLL LKLGKR+YFED+  G + K  SSF  P + G      K+ +++ QT 
Sbjct: 113 AVPSPVSGEPLLTLKLGKRLYFEDVCTGSDSKKPSSFEVPILSG------KKYKTSSQTV 166

Query: 182 QAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDE 241
           Q   CQVEGCGLDLSSAKDYHRKHRVCE HSKSPKV++ GLERRFCQQCSRFH LSEFD+
Sbjct: 167 QHPSCQVEGCGLDLSSAKDYHRKHRVCEAHSKSPKVVIAGLERRFCQQCSRFHALSEFDD 226

Query: 242 KKRSCRRRLSDHNARRRKSQPEAVRLNPARLSSSLYGPEESMISFDLGAT------QDCH 295
           KKRSCR+RLSDHNARRRK+QP++++LNP+ LSSS Y   + M  F    T      QD H
Sbjct: 227 KKRSCRQRLSDHNARRRKTQPDSIQLNPSALSSSPYDGRQIMSPFAFSRTATNLAWQDMH 286

Query: 296 SA 297
           S+
Sbjct: 287 SS 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282803|dbj|BAJ34267.1| unnamed protein product [Thellungiella halophila]

 Score =  266 bits (681), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 148/259 (57%), Positives = 170/259 (65%), Gaps = 14/259 (5%)

Query: 5   MEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSGGS 64
           ME N K PLQW+WENLI F  ++AE PRK R ++WEIDG    D TS +SS     + G 
Sbjct: 1   MECNAKPPLQWEWENLISFGTSSAEIPRKLRPMDWEIDG---FDCTSLYSSSFAAVAYGG 57

Query: 65  ISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPT 124
            S   LA     S  +++ SSS  E +T  F  EA +         +EF K   T  SP+
Sbjct: 58  SSGSDLAHAFSKSSKSTSISSSSAEVRTYNFTSEAGES--------EEFVKGMNT--SPS 107

Query: 125 LEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTS-AKRSRSNPQTTQA 183
           LE S GSG+P+LGLKLGKR YFED     N K S+ P    S S S  K+S+S  Q  Q 
Sbjct: 108 LELSFGSGDPVLGLKLGKRTYFEDFLDVENAKVSALPVSLASSSASPVKKSKSVSQRLQT 167

Query: 184 ALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKK 243
             CQVEGC LDLSSAKDYHRKHR+CENHSK PKV+V G+ERRFCQQCSRFH LSEFDEKK
Sbjct: 168 PHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKK 227

Query: 244 RSCRRRLSDHNARRRKSQP 262
           RSCRRRLSDHNARRRK  P
Sbjct: 228 RSCRRRLSDHNARRRKPNP 246

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806996|ref|NP_001242317.1| uncharacterized protein LOC100796013 [Glycine max] gi|255635964|gb|ACU18328.1| unknown [Glycine max]

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 164/320 (51%), Positives = 202/320 (63%), Gaps = 10/320 (3%)

Query: 5   MEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSGGS 64
           ME N K+  QWDWE+L  FN  AAENPR  +  +   + D  I+      SGG   SG  
Sbjct: 1   MECNAKSLGQWDWEHLFFFNTKAAENPR-LQPTDCSSEADREINVGMLHPSGGSACSG-- 57

Query: 65  ISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPT 124
            S++  AS S+SSKSASNNSSS G++K S   LE S D   D   KKE    EP   SP 
Sbjct: 58  -SELIHASSSRSSKSASNNSSSNGDSKASILTLEGSHD---DSTGKKELCNGEPIETSPA 113

Query: 125 LEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQAA 184
              S  SGEPLL LKLGKR+YFED+  G + K    P+      +S K+ +++ QT Q  
Sbjct: 114 AVPSPVSGEPLLTLKLGKRLYFEDVCTGSDSKK---PSSFDIPISSGKKHKTSSQTLQHP 170

Query: 185 LCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKR 244
            CQVE CGLDLSSAKDYHRKHRVCE HSKSPKV++ GLERRFCQQCSRFH LSEFD+KKR
Sbjct: 171 SCQVESCGLDLSSAKDYHRKHRVCEAHSKSPKVVITGLERRFCQQCSRFHALSEFDDKKR 230

Query: 245 SCRRRLSDHNARRRKSQPEAVRLNPARLSSSLYGPEESMISFDLGATQDCHSALSLLSKT 304
           SCRRRLSDHNARRRK QP++++LNP+ LSSS Y   + +  F    T    +   +  +T
Sbjct: 231 SCRRRLSDHNARRRKPQPDSIQLNPSALSSSPYDGRQIVSPFAFSRTATNLAWQDMHPQT 290

Query: 305 SWGICEPKKVSQQHPTSTSL 324
              + +P K   + P+  S+
Sbjct: 291 KEFLPKPAKAFNKIPSIVSM 310

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462971|ref|XP_003601767.1| Squamosa promoter-binding-like protein [Medicago truncatula] gi|355490815|gb|AES72018.1| Squamosa promoter-binding-like protein [Medicago truncatula]

 Score =  261 bits (666), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 158/277 (57%), Positives = 189/277 (68%), Gaps = 23/277 (8%)

Query: 5   MEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSGGS 64
           MEWN K+P QWDWENL   N+ AAE  R  +  +W ++ D  I+      SGG   SG S
Sbjct: 1   MEWNVKSPGQWDWENLFFLNSKAAETHR-LQSTDWSMEEDREINVGMLIPSGG---SGYS 56

Query: 65  ISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPT 124
           +S +  AS S+SSKSASNNSSS  ++KTS    E S D   +   KKE +K +P   SP 
Sbjct: 57  VSKLMHASSSRSSKSASNNSSSNEDSKTSMLTQEGSPD---NSTGKKESSKGDPIETSP- 112

Query: 125 LEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSS---FPAVCGSYSTSAKRSRSNPQTT 181
                 + EPLL LKLGKR+YFED+S G + K +S    P +CG    S+ ++  NP   
Sbjct: 113 ------AAEPLLTLKLGKRLYFEDVSTGSHSKKASSSAVPLLCGKKGKSSSQNMLNPS-- 164

Query: 182 QAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDE 241
               CQVEGCGLDLS AKDYHRKHR+C++HSKSP V+V GLERRFCQQCSRFH LSEFD+
Sbjct: 165 ----CQVEGCGLDLSFAKDYHRKHRICDSHSKSPVVVVAGLERRFCQQCSRFHDLSEFDD 220

Query: 242 KKRSCRRRLSDHNARRRKSQPEAVRLNPARLSSSLYG 278
           KKRSCRRRLSDHNARRRK QPEAV+LNP+ LSSS YG
Sbjct: 221 KKRSCRRRLSDHNARRRKPQPEAVKLNPSALSSSPYG 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484914|ref|XP_002267224.2| PREDICTED: LOW QUALITY PROTEIN: promoter-binding protein SPL10 [Vitis vinifera]

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/275 (51%), Positives = 182/275 (66%), Gaps = 7/275 (2%)

Query: 3   SMMEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSG 62
           S+MEWN +TP +WDWE L  FN  A E P + +    +I+ DGG+D+ S +SSGGG  SG
Sbjct: 5   SVMEWNLRTPSEWDWETLTAFNTKAFEFPGRVQLSNHDIEVDGGVDNGSVYSSGGGGFSG 64

Query: 63  GSISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGS 122
             +        S  S  + +  SS+ E    KFR    +D  +DF   KE  +   +G  
Sbjct: 65  SDLGH----GSSSRSSISVSGDSSLKE-GIKKFR--NVEDFHKDFSENKELIRVGSSGNC 117

Query: 123 PTLEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQ 182
           PT+  S GSGE ++GLKLGKR YFED+ A    K ++      S  ++ KR R++ Q++Q
Sbjct: 118 PTVGTSDGSGEAMIGLKLGKRTYFEDVCAASTAKTTTSSVNPASSVSATKRFRTSYQSSQ 177

Query: 183 AALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEK 242
              CQVEGC LDL SAKDYHR+HR+CENHSKSPKVIV GLERRFCQQCSRFH L+EFD+K
Sbjct: 178 TPRCQVEGCNLDLKSAKDYHRRHRICENHSKSPKVIVAGLERRFCQQCSRFHELTEFDDK 237

Query: 243 KRSCRRRLSDHNARRRKSQPEAVRLNPARLSSSLY 277
           KRSCRRRL+DHNARRR+  PE+++ +  RL SSLY
Sbjct: 238 KRSCRRRLNDHNARRRRPHPESIQFSSGRLPSSLY 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
TAIR|locus:2169248	419	SPL2 "squamosa promoter bindin	0.625	0.582	0.505	1.1e-66
TAIR|locus:2016014	396	SPL10 "squamosa promoter bindi	0.4	0.393	0.558	8.4e-52
TAIR|locus:2015999	393	SPL11 "squamosa promoter-like	0.448	0.445	0.526	1.7e-51
TAIR|locus:2059974	375	SPL9 "squamosa promoter bindin	0.387	0.402	0.518	5.7e-36
TAIR|locus:2095793	354	SPL15 "squamosa promoter bindi	0.523	0.576	0.418	7.4e-34
TAIR|locus:2026428	405	AT1G69170 [Arabidopsis thalian	0.238	0.229	0.655	1e-32
TAIR|locus:2159717	359	SPL13A "SQUAMOSA PROMOTER-BIND	0.523	0.568	0.389	9.8e-32
TAIR|locus:2832472	359	SPL13B "SQUAMOSA PROMOTER-BIND	0.523	0.568	0.389	9.8e-32
TAIR|locus:504956101	333	SPL8 "squamosa promoter bindin	0.307	0.360	0.511	6.8e-30
TAIR|locus:2037355	1035	SPL14 "squamosa promoter bindi	0.241	0.090	0.631	4e-28

TAIR|locus:2169248 SPL2 "squamosa promoter binding protein-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
 Identities = 131/259 (50%), Positives = 145/259 (55%)

Query:     5 MEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEXXXXXXXXXXXXXXXXXXXXXXXX 64
             ME N K P QW+ ENLI F  + AE PRK + +EWE                        
Sbjct:     1 MECNAKPPFQWELENLISFGTSTAEVPRKLKPMEWEIDGFDCTSLYSSSFAYAGSSGSDI 60

Query:    65 XXXMGXXXXXXXXXXXXXXXXXMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPT 124
                                     E +T  F  E  +       L  EFAK   T  SP+
Sbjct:    61 AHAFSKSSKSTSISSSSA------EVRTHNFTSETGES------LPGEFAKGIDT--SPS 106

Query:   125 LEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTS-AKRSRSNPQTTQA 183
             LE S GSG+P+LGLKLGKR YFED     N K    P    S S S  K+S+S PQ  Q 
Sbjct:   107 LELSFGSGDPVLGLKLGKRTYFEDFWEVENAKGLGLPVTLASSSVSPVKKSKSIPQRLQT 166

Query:   184 ALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKK 243
               CQVEGC LDLSSAKDYHRKHR+CENHSK PKV+V G+ERRFCQQCSRFH LSEFDEKK
Sbjct:   167 PHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKK 226

Query:   244 RSCRRRLSDHNARRRKSQP 262
             RSCRRRLSDHNARRRK  P
Sbjct:   227 RSCRRRLSDHNARRRKPNP 245

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2016014 SPL10 "squamosa promoter binding protein-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.4e-52, Sum P(3) = 8.4e-52
 Identities = 91/163 (55%), Positives = 110/163 (67%)

Query:   112 EFAKAEPTGGSPTLEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSA 171
             +F + +P   S  LE  + S E  L LKLGKR Y E+     N   S+      + S  A
Sbjct:   104 DFLQVKP---STALEVPIASAESDLCLKLGKRTYSEEFWGRNNNDLSAVSMNLLTPSVVA 160

Query:   172 -KRSRSNPQTTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQC 230
              K+++S  Q+ Q   CQ++GC LDLSS+KDYHRKHRVCE HSK PKV+V GLERRFCQQC
Sbjct:   161 RKKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQC 220

Query:   231 SRFHGLSEFDEKKRSCRRRLSDHNARRRKSQPEAV-RLNPARL 272
             SRFH +SEFDEKKRSCR+RLS HNARRRK  P+ V  LN  R+
Sbjct:   221 SRFHAVSEFDEKKRSCRKRLSHHNARRRK--PQGVFPLNSERV 261

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010358 "leaf shaping" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2015999 SPL11 "squamosa promoter-like 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 1.7e-51, Sum P(3) = 1.7e-51
 Identities = 98/186 (52%), Positives = 116/186 (62%)

Query:    89 ETKTSKFRLEASD-DVLEDFDLKKEFAKAEPTGGSPTLEASVGSGEPLLGLKLGKRMYFE 147
             E K  K   E+S  D   + D  +   KA PT     LE SV S E  L LKLGKR Y E
Sbjct:    84 EAKRCKLASESSPGDSCSNIDFVQ--VKA-PTA----LEVSVASAESDLCLKLGKRTYSE 136

Query:   148 DISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQAALCQVEGCGLDLSSAKDYHRKHRV 207
             +     N + S+      + S  A +S+   Q+     CQ++GC LDLSSAK YHRKH+V
Sbjct:   137 EYWGRNNNEISAVSMKLLTPSVVAGKSKLCGQSMPVPRCQIDGCELDLSSAKGYHRKHKV 196

Query:   208 CENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQPEAV-R 266
             CE HSK PKV V GLERRFCQQCSRFH +SEFDEKKRSCR+RLS HNARRRK  P+ V  
Sbjct:   197 CEKHSKCPKVSVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRK--PQGVFS 254

Query:   267 LNPARL 272
             +NP R+
Sbjct:   255 MNPERV 260

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2059974 SPL9 "squamosa promoter binding protein-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 86/166 (51%), Positives = 112/166 (67%)

Query:   115 KAEPTGGSPTLEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRS 174
             +AE +GGS T E+S  SG    GL  G+++YFED   GG+G +SS     G  S    R 
Sbjct:    15 QAE-SGGSST-ESSSFSG----GLMFGQKIYFED-GGGGSGSSSS-----GGRSNRRVRG 62

Query:   175 RSNPQTTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFH 234
               + Q+ Q   CQVEGCG+DL++AK Y+ +HRVC  HSK+PKV V G+E+RFCQQCSRFH
Sbjct:    63 GGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSRFH 122

Query:   235 GLSEFDEKKRSCRRRLSDHNARRRKSQPEAVRLNPAR---LSSSLY 277
              L EFD +KRSCRRRL+ HN RRRK QP ++ +  +R   ++ SLY
Sbjct:   123 QLPEFDLEKRSCRRRLAGHNERRRKPQPASLSVLASRYGRIAPSLY 168

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0048366 "leaf development" evidence=IMP;IDA

GO:2000025 "regulation of leaf formation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2095793 SPL15 "squamosa promoter binding protein-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 95/227 (41%), Positives = 124/227 (54%)

Query:   137 GLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQAALCQVEGCGLDLS 196
             GL+ G+++YFED  +G   KN          +T  K S     TT  A CQVEGC +DLS
Sbjct:    26 GLRFGQKIYFED-GSGSRSKNR--------VNTVRKSS-----TT--ARCQVEGCRMDLS 69

Query:   197 SAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNAR 256
             + K Y+ +H+VC  HSKS KVIV GL +RFCQQCSRFH LSEFD +KRSCRRRL+ HN R
Sbjct:    70 NVKAYYSRHKVCCIHSKSSKVIVSGLHQRFCQQCSRFHQLSEFDLEKRSCRRRLACHNER 129

Query:   257 RRKSQPEAVRLNP--ARLSSSLYG-PEESMISFDLGATQDCHSALSLLSKTS-WGICEPK 312
             RRK QP         +R++ SLYG P  +MI   LG      +A S++ +   W I  P 
Sbjct:   130 RRKPQPTTALFTSHYSRIAPSLYGNPNAAMIKSVLGDPTAWSTARSVMQRPGPWQI-NPV 188

Query:   313 KVSQQHPTSTSLTNIPHAVMPAMAQGSPFASSEYRQMGKLSTEFQVH 359
             + +  H    S  +      P M   +   SS    +  LS  + +H
Sbjct:   189 RETHPHMNVLSHGSSSFTTCPEMINNNSTDSS--CALSLLSNSYPIH 233

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0008361 "regulation of cell size" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
 Identities = 61/93 (65%), Positives = 75/93 (80%)

Query:   167 YSTSAKRSRSNPQTTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRF 226
             ++  +K+SR++   +Q  LCQV GC  DLSS+KDYH++HRVCE HSK+  VIV GLE+RF
Sbjct:   105 FALPSKKSRASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRF 164

Query:   227 CQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRK 259
             CQQCSRFH LSEFD+ KRSCRRRL+ HN RRRK
Sbjct:   165 CQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRK 197

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2159717 SPL13A "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13A" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 86/221 (38%), Positives = 124/221 (56%)

Query:    95 FRLEASDDVLEDFDLKKEFAKAEPT---GGSPTLEASVGSGEPLLGLKLGKRM-YF---E 147
             F+L  S   L  FD + + +  + +   GGS   +A   S +  LG  +G     F   E
Sbjct:     5 FKL--SSGYLSGFDQEPDLSPMDGSISFGGSSQSKADF-SFDLKLGRNIGNSSSVFGDTE 61

Query:   148 DISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQ-TTQAALCQVEGCGLDLSSAKDYHRKHR 206
              + +    K+S+     GS S+S+KR+R N   T Q  +C V+GC  D S+ ++YH++H+
Sbjct:    62 QVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHK 121

Query:   207 VCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQPEAVR 266
             VC+ HSK+P V + G ++RFCQQCSRFH L EFDE KRSCR+RL  HN RRRK QPE + 
Sbjct:   122 VCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIG 181

Query:   267 LNPARLSSSLYGPEESMISFDLGATQDCHSALSLLSKTSWG 307
               PA   +   G +  ++ F  G+        S+L+  SWG
Sbjct:   182 -RPANFFTGFQGSK--LLEFSGGS--HVFPTTSVLNP-SWG 216

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:2832472 SPL13B "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 86/221 (38%), Positives = 124/221 (56%)

Query:    95 FRLEASDDVLEDFDLKKEFAKAEPT---GGSPTLEASVGSGEPLLGLKLGKRM-YF---E 147
             F+L  S   L  FD + + +  + +   GGS   +A   S +  LG  +G     F   E
Sbjct:     5 FKL--SSGYLSGFDQEPDLSPMDGSISFGGSSQSKADF-SFDLKLGRNIGNSSSVFGDTE 61

Query:   148 DISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQ-TTQAALCQVEGCGLDLSSAKDYHRKHR 206
              + +    K+S+     GS S+S+KR+R N   T Q  +C V+GC  D S+ ++YH++H+
Sbjct:    62 QVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHK 121

Query:   207 VCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQPEAVR 266
             VC+ HSK+P V + G ++RFCQQCSRFH L EFDE KRSCR+RL  HN RRRK QPE + 
Sbjct:   122 VCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIG 181

Query:   267 LNPARLSSSLYGPEESMISFDLGATQDCHSALSLLSKTSWG 307
               PA   +   G +  ++ F  G+        S+L+  SWG
Sbjct:   182 -RPANFFTGFQGSK--LLEFSGGS--HVFPTTSVLNP-SWG 216

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:504956101 SPL8 "squamosa promoter binding protein-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 66/129 (51%), Positives = 79/129 (61%)

Query:   136 LGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQAALCQVEGCGLDL 195
             +GL LG R YF   SA     +  F +     S   +   +N  +T    CQ EGC  DL
Sbjct:   147 IGLNLGGRTYF---SAA----DDDFVSRLYRRSRPGESGMANSLSTPR--CQAEGCNADL 197

Query:   196 SSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNA 255
             S AK YHR+H+VCE HSK+  V+  GL +RFCQQCSRFH LSEFD  KRSCR+RL+DHN 
Sbjct:   198 SHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNR 257

Query:   256 RRRKSQPEA 264
             RRRK    A
Sbjct:   258 RRRKCHQSA 266

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 4.0e-28, Sum P(2) = 4.0e-28
 Identities = 60/95 (63%), Positives = 70/95 (73%)

Query:   172 KRSRSNPQTTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCS 231
             K+ RS        +CQV+ C  DLS AKDYHR+H+VCE HSK+ K +VG   +RFCQQCS
Sbjct:   106 KKVRSGSPGGNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCS 165

Query:   232 RFHGLSEFDEKKRSCRRRLSDHNARRRKS-QPEAV 265
             RFH LSEFDE KRSCRRRL+ HN RRRK+ QPE V
Sbjct:   166 RFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQPEEV 200

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	390
pfam03110	79	pfam03110, SBP, SBP domain	2e-54

>gnl|CDD|190527 pfam03110, SBP, SBP domain

 Score =  174 bits (442), Expect = 2e-54
 Identities = 61/79 (77%), Positives = 69/79 (87%)

Query: 185 LCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKR 244
            CQVEGCG DLS+AKDYHR+H+VCE HSK+P V+V GLE+RFCQQCSRFH LSEFDE KR
Sbjct: 1   RCQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKR 60

Query: 245 SCRRRLSDHNARRRKSQPE 263
           SCRRRL+ HN RRRK QP+
Sbjct: 61  SCRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	390
PF03110	79	SBP: SBP domain; InterPro: IPR004333 The SBP plant	100.0

>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []

Probab=100.00  E-value=4.9e-40  Score=265.71  Aligned_cols=78  Identities=67%  Similarity=1.219  Sum_probs=63.3

Q ss_pred             CeeeCCCccccccChhhhcccccchhccCCCeEEECCchhHHHhhhhcccCCcccccccchHHHHHHHHHhhhccCCc
Q 016391          185 LCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQP  262 (390)
Q Consensus       185 ~CQVeGC~~dLs~~k~Y~rRhrVCe~H~kAp~V~v~G~~qRFCQQCsRFH~L~EFDg~kRSCR~rLa~Hn~RRRk~q~  262 (390)
                      +||||||++||+.+|.||+||||||.|+|||+|+++|+++||||||+|||+|+|||+.|||||++|++||+||||+++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999999876

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	390
1ul4_A	94	Solution Structure Of The Dna-Binding Domain Of Squ		6e-24
1wj0_A	60	Solution Structure Of The Dna-Binding Domain Of Squ		9e-19
1ul5_A	88	Solution Structure Of The Dna-binding Domain Of Squ		9e-18

>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 58/75 (77%)
Query: 185 LCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKR 244
           LCQV+ C  D+  AK YHR+H+VCE H+K+  V + GL +RFCQQCSRFH L EFDE KR
Sbjct: 10  LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKR 69
Query: 245 SCRRRLSDHNARRRK 259
           SCRRRL+ HN RRRK
Sbjct: 70  SCRRRLAGHNERRRK 84

>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/58 (65%), Positives = 45/58 (77%)
Query: 183 AALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFD 240
           A  CQV+ CG DLS  KDYHR+H+VCE HSK+   +VGG+ +RFCQQCSRFH L EFD
Sbjct: 3   AICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88

Iteration: 1
 Score = 87.8 bits (216), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 52/76 (68%)
Query: 184 ALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKK 243
           A CQV  C  D+S  K YH++HRVC   + +  V++ G  +R+CQQC +FH L +FDE K
Sbjct: 4   ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGK 63
Query: 244 RSCRRRLSDHNARRRK 259
           RSCRR+L  HN RR++
Sbjct: 64  RSCRRKLERHNNRRKR 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	390
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	3e-40
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	2e-39
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	7e-34
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94

 Score =  137 bits (345), Expect = 3e-40
 Identities = 51/87 (58%), Positives = 63/87 (72%)

Query: 178 PQTTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLS 237
             ++   LCQV+ C  D+  AK YHR+H+VCE H+K+  V + GL +RFCQQCSRFH L 
Sbjct: 3   SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQ 62

Query: 238 EFDEKKRSCRRRLSDHNARRRKSQPEA 264
           EFDE KRSCRRRL+ HN RRRKS  E+
Sbjct: 63  EFDEAKRSCRRRLAGHNERRRKSSGES 89

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88

 Score =  134 bits (338), Expect = 2e-39
 Identities = 38/83 (45%), Positives = 53/83 (63%)

Query: 182 QAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDE 241
             A CQV  C  D+S  K YH++HRVC   + +  V++ G  +R+CQQC +FH L +FDE
Sbjct: 2   SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDE 61

Query: 242 KKRSCRRRLSDHNARRRKSQPEA 264
            KRSCRR+L  HN RR++   + 
Sbjct: 62  GKRSCRRKLERHNNRRKRKPVDK 84

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60

 Score =  119 bits (299), Expect = 7e-34
 Identities = 38/58 (65%), Positives = 45/58 (77%)

Query: 183 AALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFD 240
           A  CQV+ CG DLS  KDYHR+H+VCE HSK+   +VGG+ +RFCQQCSRFH L EFD
Sbjct: 3   AICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 56/394 (14%), Positives = 110/394 (27%), Gaps = 154/394 (39%)

Query: 101 DDVLEDFD-------LKKEFAKAEPTGGSPTLEASVGSGEPLLGLKL--------GKRMY 145
           D  +++FD        K   +K E       ++  + S + + G            + M 
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEE-------IDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 146 ---FEDISAGGNGKNSSF-----------PA-VCGSYSTSAKRSRSNPQ----------- 179
               E++       N  F           P+ +   Y     R  ++ Q           
Sbjct: 80  QKFVEEVLR----INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 180 ---TTQAALCQVE-----------GCG---LDLSSAKDYHRKHRVCEN-------HSKSP 215
                + AL ++            G G   + L     Y  + ++          +  SP
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 216 KVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQPEAVRLNPARLSSS 275
           + ++  L++   Q    +   S+      S   +L  H+ +         RL    L S 
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSD-----HSSNIKLRIHSIQAELR-----RL----LKSK 241

Query: 276 LYGPEESMI------------SFDLGA-----TQDCHSALSLLSKTSWGICEPKKVSQQH 318
            Y  E  ++            +F+L       T+       L + T         +S  H
Sbjct: 242 PY--ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT------TTHISLDH 293

Query: 319 PTSTSLT------------NIPHAVMPAMA-QGSPFASS--------------EYRQMG- 350
             S +LT            +     +P      +P   S               ++ +  
Sbjct: 294 H-SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 351 -KLSTEFQVHASSFHQDEGNYSQEIQLFRAPYES 383
            KL+T  +   SS +        E   +R  ++ 
Sbjct: 353 DKLTTIIE---SSLNV------LEPAEYRKMFDR 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	390
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	100.0
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	100.0
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	99.97

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=1.8e-43  Score=292.62  Aligned_cols=87  Identities=59%  Similarity=1.041  Sum_probs=80.4

Q ss_pred             CCCCCCeeeCCCccccccChhhhcccccchhccCCCeEEECCchhHHHhhhhcccCCcccccccchHHHHHHHHHhhhcc
Q 016391          180 TTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRK  259 (390)
Q Consensus       180 ~~~~~~CQVeGC~~dLs~~k~Y~rRhrVCe~H~kAp~V~v~G~~qRFCQQCsRFH~L~EFDg~kRSCR~rLa~Hn~RRRk  259 (390)
                      +.+.++||||||++||+.+|+||+||||||+|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||
T Consensus         5 ~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRRk   84 (94)
T 1ul4_A            5 SSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRK   84 (94)
T ss_dssp             ---CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCS
T ss_pred             CCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhcc
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccc
Q 016391          260 SQPEAVR  266 (390)
Q Consensus       260 ~q~~~~~  266 (390)
                      +++++..
T Consensus        85 ~~~~~~~   91 (94)
T 1ul4_A           85 SSGESGP   91 (94)
T ss_dssp             CCCC---
T ss_pred             CCCCcCC
Confidence            9999864

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=4.1e-42  Score=281.59  Aligned_cols=83  Identities=46%  Similarity=0.919  Sum_probs=78.6

Q ss_pred             CCCCeeeCCCccccccChhhhcccccchhccCCCeEEECCchhHHHhhhhcccCCcccccccchHHHHHHHHHhhhccCC
Q 016391          182 QAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQ  261 (390)
Q Consensus       182 ~~~~CQVeGC~~dLs~~k~Y~rRhrVCe~H~kAp~V~v~G~~qRFCQQCsRFH~L~EFDg~kRSCR~rLa~Hn~RRRk~q  261 (390)
                      ..++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++
T Consensus         2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~   81 (88)
T 1ul5_A            2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP   81 (88)
T ss_dssp             -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred             CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             ccc
Q 016391          262 PEA  264 (390)
Q Consensus       262 ~~~  264 (390)
                      ++.
T Consensus        82 ~~~   84 (88)
T 1ul5_A           82 VDK   84 (88)
T ss_dssp             CSS
T ss_pred             ccC
Confidence            654

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=99.97  E-value=1.6e-32  Score=211.21  Aligned_cols=59  Identities=64%  Similarity=1.203  Sum_probs=57.2

Q ss_pred             CCCCeeeCCCccccccChhhhcccccchhccCCCeEEECCchhHHHhhhhcccCCcccc
Q 016391          182 QAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFD  240 (390)
Q Consensus       182 ~~~~CQVeGC~~dLs~~k~Y~rRhrVCe~H~kAp~V~v~G~~qRFCQQCsRFH~L~EFD  240 (390)
                      +.++|||+||++||+.+|+|||||||||.|+|||+|+++|+++||||||+|||+|+|||
T Consensus         2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD   60 (60)
T 1wj0_A            2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   60 (60)
T ss_dssp             -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence            46899999999999999999999999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	390
d1ul5a_	86	g.72.1.1 (A:) Squamosa promoter binding protein-li	5e-47
d1ul4a_	81	g.72.1.1 (A:) Squamosa promoter binding protein-li	8e-47
d1wj0a_	58	g.72.1.1 (A:) Squamosa-promoter binding-like prote	4e-33

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  153 bits (388), Expect = 5e-47
 Identities = 38/81 (46%), Positives = 53/81 (65%)

Query: 184 ALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKK 243
           A CQV  C  D+S  K YH++HRVC   + +  V++ G  +R+CQQC +FH L +FDE K
Sbjct: 2   ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGK 61

Query: 244 RSCRRRLSDHNARRRKSQPEA 264
           RSCRR+L  HN RR++   + 
Sbjct: 62  RSCRRKLERHNNRRKRKPVDK 82

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  152 bits (386), Expect = 8e-47
 Identities = 51/79 (64%), Positives = 60/79 (75%)

Query: 185 LCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKR 244
           LCQV+ C  D+  AK YHR+H+VCE H+K+  V + GL +RFCQQCSRFH L EFDE KR
Sbjct: 3   LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKR 62

Query: 245 SCRRRLSDHNARRRKSQPE 263
           SCRRRL+ HN RRRKS  E
Sbjct: 63  SCRRRLAGHNERRRKSSGE 81

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  116 bits (291), Expect = 4e-33
 Identities = 38/58 (65%), Positives = 45/58 (77%)

Query: 183 AALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFD 240
           A  CQV+ CG DLS  KDYHR+H+VCE HSK+   +VGG+ +RFCQQCSRFH L EFD
Sbjct: 1   AICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	390
d1ul4a_	81	Squamosa promoter binding protein-like 4, DNA-bind	100.0
d1ul5a_	86	Squamosa promoter binding protein-like 7, DNA-bind	100.0
d1wj0a_	58	Squamosa-promoter binding-like protein 12, DNA-bin	99.97

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.1e-42  Score=279.47  Aligned_cols=80  Identities=64%  Similarity=1.141  Sum_probs=78.4

Q ss_pred             CCeeeCCCccccccChhhhcccccchhccCCCeEEECCchhHHHhhhhcccCCcccccccchHHHHHHHHHhhhccCCcc
Q 016391          184 ALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQPE  263 (390)
Q Consensus       184 ~~CQVeGC~~dLs~~k~Y~rRhrVCe~H~kAp~V~v~G~~qRFCQQCsRFH~L~EFDg~kRSCR~rLa~Hn~RRRk~q~~  263 (390)
                      ..||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+++|
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999885

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1e-42  Score=282.13  Aligned_cols=83  Identities=46%  Similarity=0.905  Sum_probs=80.7

Q ss_pred             CCCeeeCCCccccccChhhhcccccchhccCCCeEEECCchhHHHhhhhcccCCcccccccchHHHHHHHHHhhhccCCc
Q 016391          183 AALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQP  262 (390)
Q Consensus       183 ~~~CQVeGC~~dLs~~k~Y~rRhrVCe~H~kAp~V~v~G~~qRFCQQCsRFH~L~EFDg~kRSCR~rLa~Hn~RRRk~q~  262 (390)
                      .++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+++
T Consensus         1 ~~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~   80 (86)
T d1ul5a_           1 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV   80 (86)
T ss_dssp             CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred             CCeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc
Q 016391          263 EAV  265 (390)
Q Consensus       263 ~~~  265 (390)
                      ++.
T Consensus        81 ~~~   83 (86)
T d1ul5a_          81 DKG   83 (86)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            865

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.2e-32  Score=209.09  Aligned_cols=57  Identities=65%  Similarity=1.230  Sum_probs=55.9

Q ss_pred             CCeeeCCCccccccChhhhcccccchhccCCCeEEECCchhHHHhhhhcccCCcccc
Q 016391          184 ALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFD  240 (390)
Q Consensus       184 ~~CQVeGC~~dLs~~k~Y~rRhrVCe~H~kAp~V~v~G~~qRFCQQCsRFH~L~EFD  240 (390)
                      ..||||||++||+.+|+|||||||||.|+|||+|+|+|+++||||||+|||+|+|||
T Consensus         2 ~~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCsrFH~L~eFD   58 (58)
T d1wj0a_           2 ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   58 (58)
T ss_dssp             EECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             ceeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccCCcccccccC
Confidence            379999999999999999999999999999999999999999999999999999998