BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016392
         (390 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OTB|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
           (Thg1) - Dgtp Complex
 pdb|3OTB|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
           (Thg1) - Dgtp Complex
 pdb|3OTC|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
           (Thg1)- Native Ii
 pdb|3OTC|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
           (Thg1)- Native Ii
 pdb|3OTD|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
           (Thg1)- Nai Derivative
 pdb|3OTD|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
           (Thg1)- Nai Derivative
 pdb|3OTE|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
           (Thg1)- Native I
 pdb|3OTE|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
           (Thg1)- Native I
          Length = 269

 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/225 (44%), Positives = 145/225 (64%), Gaps = 10/225 (4%)

Query: 173 EPNDEQALNLMNSCAVAVLEEFEDITFAYGVSDEYSFVLKNASMFYQRQASEIVSVIVSF 232
           +PND +AL LM  CA  V+EE EDI  AYG SDEYSFV K  + +++R+AS+ ++ + S 
Sbjct: 44  KPNDSRALQLMTKCAQTVMEELEDIVIAYGQSDEYSFVFKRKTNWFKRRASKFMTHVASQ 103

Query: 233 FTSMYVVKWKEFFPQKKLNYPPSFDGRAVCYPSSDIIRDYLAWRQVDCHINNQYNTCFWM 292
           F S YV  W+++F  + L YPP FDGR V YPS+  ++DYL+WRQ DCHINN YNT FW 
Sbjct: 104 FASSYVFYWRDYFEDQPLLYPPGFDGRVVVYPSNQTLKDYLSWRQADCHINNLYNTVFWA 163

Query: 293 LV-KSGKSKSEAQGCLKGTQAREKNELLIQKFGIDYSKLPLMFRQGSSIFRARTEKSVAS 351
           L+ +SG +  +AQG L+GT A +KNE+L  +F I+Y+    M+R+G+ +   + ++ +  
Sbjct: 164 LIQQSGLTPVQAQGRLQGTLAADKNEILFSEFNINYNNELPMYRKGTVLIWQKVDEVMTK 223

Query: 352 ENKSSVEKVWNKVLVS---------HCNIIEPSFWMAHPSILNEE 387
           E K   E    K+ V+         HC+II  +FW  HP IL+E+
Sbjct: 224 EIKLPTEMEGKKMAVTRTRTKPVPLHCDIIGDAFWKEHPEILDED 268



 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/167 (50%), Positives = 111/167 (66%)

Query: 1   MANSKYEYVKSFEVEDEIFSPNLLVVRIHGRDFQRFSHDHGFEKPNDERALNLMNTCAVA 60
           MA SK+EYV+ FE +D   +   +VVR+ GR+F RF+  H F KPND RAL LM  CA  
Sbjct: 1   MAKSKFEYVRDFEADDTCLAHCWVVVRLDGRNFHRFAEKHNFAKPNDSRALQLMTKCAQT 60

Query: 61  VLEEYPDIVFSYGYSDEYSFVFKRTSKFYQRRASKILSLIVSFFTSVYVTKWKEFFPLKE 120
           V+EE  DIV +YG SDEYSFVFKR + +++RRASK ++ + S F S YV  W+++F  + 
Sbjct: 61  VMEELEDIVIAYGQSDEYSFVFKRKTNWFKRRASKFMTHVASQFASSYVFYWRDYFEDQP 120

Query: 121 FRYPPSFHSRVISCASIEVLQQYLAWRQNDCHVNNQYETCLWMLIKH 167
             YPP F  RV+   S + L+ YL+WRQ DCH+NN Y T  W LI+ 
Sbjct: 121 LLYPPGFDGRVVVYPSNQTLKDYLSWRQADCHINNLYNTVFWALIQQ 167


>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
           Carboxylase
          Length = 1236

 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 117 PLKEFRYPPSFHSRVISCASIEVLQQYLAWRQNDCHVNNQYETCLWMLIKHGKSENEP-- 174
           P+K+FR  P      ++  S     +   W +   +V+ +Y+  L  +I HGK  N+   
Sbjct: 373 PVKDFRPSPG----QLTSVSFPSWARVDTWVKKGTNVSAEYDPTLAKIIVHGKDRNDAIM 428

Query: 175 NDEQALN 181
              QALN
Sbjct: 429 KLNQALN 435


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,740,882
Number of Sequences: 62578
Number of extensions: 466592
Number of successful extensions: 993
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 975
Number of HSP's gapped (non-prelim): 18
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)