Query 016392
Match_columns 390
No_of_seqs 189 out of 437
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:26:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2721 Uncharacterized conser 100.0 1.1E-79 2.5E-84 566.8 18.3 253 7-388 1-260 (260)
2 COG4021 Uncharacterized conser 100.0 4.3E-70 9.4E-75 502.8 19.3 245 2-380 1-248 (249)
3 PF04446 Thg1: tRNAHis guanyly 100.0 1E-46 2.2E-51 331.5 11.7 131 5-135 1-135 (135)
4 PF14413 Thg1C: Thg1 C termina 100.0 1.8E-44 3.9E-49 311.5 7.8 117 265-384 1-120 (120)
5 PF04446 Thg1: tRNAHis guanyly 100.0 2E-32 4.3E-37 241.0 7.9 112 153-264 13-135 (135)
6 COG4021 Uncharacterized conser 99.9 1.8E-26 4E-31 213.8 0.0 133 41-189 48-183 (249)
7 KOG2721 Uncharacterized conser 99.8 1.7E-20 3.8E-25 174.4 3.7 132 45-188 47-181 (260)
8 PF14413 Thg1C: Thg1 C termina 99.3 1.2E-13 2.5E-18 119.9 -3.2 52 136-189 1-52 (120)
9 COG2123 RNase PH-related exori 16.3 53 0.0011 32.8 0.3 13 26-38 23-35 (272)
10 PF03683 UPF0175: Uncharacteri 15.9 5.6E+02 0.012 20.2 6.2 33 294-328 31-63 (76)
No 1
>KOG2721 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-79 Score=566.83 Aligned_cols=253 Identities=61% Similarity=1.061 Sum_probs=230.8
Q ss_pred hhhhhccccCCCCCCCeEEEEEeCCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHhCCCcEEEEeccceeeeeeeccc
Q 016392 7 EYVKSFEVEDEIFSPNLLVVRIHGRDFQRFSHDHGFEKPNDERALNLMNTCAVAVLEEYPDIVFSYGYSDEYSFVFKRTS 86 (390)
Q Consensus 7 e~~k~~E~~~~l~p~~~~vvRlDG~~F~kft~~~~f~kP~D~r~~~am~~t~~~l~~~~~~~~~ayt~SDEis~~f~~~~ 86 (390)
||||+||.++.++|.++|||||||++||+|++.|.|+||+|++++++|++||+.+|+++++|.+||++|||+
T Consensus 1 eYVksFE~~d~~lp~~~iVvRIDGr~FhrFs~~h~FeKPNDe~aLnLMnscA~~Vl~ef~DIv~AyG~SDEY-------- 72 (260)
T KOG2721|consen 1 EYVKSFEVEDEVLPPCWIVVRIDGRDFHRFSKVHEFEKPNDETALNLMNSCASAVLEEFPDIVFAYGYSDEY-------- 72 (260)
T ss_pred CchhhhhcccccccceEEEEEEcCcchhhhhhhhcccCCChHHHHHHHHHHHHHHHHhccceEEEeccCcce--------
Confidence 799999999999999999999999999999999999999999999999999999999888866666666666
Q ss_pred cccccchhhhhHHHHhhhHHHHHhhhhhccCCCCCCCCCcceeeeeeeCCHHHHHHHHHhhhhcccccccccceeeeeee
Q 016392 87 KFYQRRASKILSLIVSFFTSVYVTKWKEFFPLKEFRYPPSFHSRVISCASIEVLQQYLAWRQNDCHVNNQYETCLWMLIK 166 (390)
Q Consensus 87 ~~f~gRv~KL~Sv~aS~~Ss~f~~~l~~~~~~~~l~~p~~FDaRvi~lp~~e~v~~Yl~wRq~da~RN~ln~~~~~~Lr~ 166 (390)
T Consensus 73 -------------------------------------------------------------------------------- 72 (260)
T KOG2721|consen 73 -------------------------------------------------------------------------------- 72 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCchHHHHHHhHHHHHHHHhhhcceeeeecccceeeeeeeccccccccchhhhhHHHHHHHHhHhhhhhhhcCC
Q 016392 167 HGKSENEPNDEQALNLMNSCAVAVLEEFEDITFAYGVSDEYSFVLKNASMFYQRQASEIVSVIVSFFTSMYVVKWKEFFP 246 (390)
Q Consensus 167 eG~s~~kP~D~~~l~aM~~ta~~l~~~f~~i~~aYtqSDEIS~vf~~~~~~f~~R~~Kl~S~~aS~~Ss~f~~~~~~~fp 246 (390)
||||++.+.+|.||.+||+|.+||+|+|+|+++|.++||
T Consensus 73 -----------------------------------------SFV~kk~t~~fkRr~sKi~s~v~SfF~s~YV~~W~~ffp 111 (260)
T KOG2721|consen 73 -----------------------------------------SFVFKKSTELFKRRASKILSLVASFFASVYVTKWKKFFP 111 (260)
T ss_pred -----------------------------------------eeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 556777789999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeecCChhhHHHHHHHhhhhhhHhhhHHHHHHHHH-HcCCChhhHhhhccCCChHHHHHHHHHHhCC
Q 016392 247 QKKLNYPPSFDGRAVCYPSSDIIRDYLAWRQVDCHINNQYNTCFWMLV-KSGKSKSEAQGCLKGTQAREKNELLIQKFGI 325 (390)
Q Consensus 247 ~~~l~~p~~FD~Rvv~~P~~~~v~dYl~WRq~d~~rN~l~n~~~w~l~-~~G~s~~eA~~~L~G~~~~~k~ElLf~~~gI 325 (390)
+.+|.++|+||||+|+||+.+.++|||.|||+|||+||+||||||+|| ++|+|+.||++.|+||.+++|||+||++|||
T Consensus 112 ~~~L~y~PsFdgrvV~yps~q~LkdYLaWRq~DcHinNlYnT~fWmLv~ksG~t~~qaq~~Lkgt~s~ekneilf~efgi 191 (260)
T KOG2721|consen 112 HLKLLYAPSFDGRVVSYPSVQVLKDYLAWRQVDCHINNLYNTCFWMLVKKSGKTPSQAQEILKGTFSAEKNEILFSEFGI 191 (260)
T ss_pred CCccccCCCCCCcEEecccHHHHHHHHHHHhhcccccchhhHHHHHHHHHhCCChHHHHHHHHhhhhhhhhhHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999 6999999999999999999999999999999
Q ss_pred CCCCcccccccceEEEEeeee-cccc-----ccccccceeeeeeEEeecccCCCccccCcCCCccCCCC
Q 016392 326 DYSKLPLMFRQGSSIFRARTE-KSVA-----SENKSSVEKVWNKVLVSHCNIIEPSFWMAHPSILNEEP 388 (390)
Q Consensus 326 N~n~~P~~~r~Gs~i~r~~~~-~~~~-----~~~~~~~~~~R~~i~~~h~dii~~~fw~~~~~~l~~~~ 388 (390)
|||++|+++|+||++.|+.+. +.-. ..+...++..|.++...|++||||.||.+||.+|.+.+
T Consensus 192 nyn~~p~~~rkGs~l~rk~v~~~~~k~~~~~~~k~~~~~~~~~k~lp~~~~~i~d~f~~~~p~~~~~~~ 260 (260)
T KOG2721|consen 192 NYNNEPEMFRKGSILIRKKVKGQEWKINTEIQGKKLFVTYTRTKPLPLHVDIIGDDFWKEHPEILDEDS 260 (260)
T ss_pred ccCCchHHHhcccEEEEecCCcceeeechhcccceeeeeeccCcceeEEEEEecCcccccCchhhccCC
Confidence 999999999999999999772 1111 12234456677778889999999999999999998754
No 2
>COG4021 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.3e-70 Score=502.84 Aligned_cols=245 Identities=36% Similarity=0.631 Sum_probs=207.1
Q ss_pred CCCcchhhhhccccCCCCCCCeEEEEEeCCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHh-CCCcEEEEeccceeee
Q 016392 2 ANSKYEYVKSFEVEDEIFSPNLLVVRIHGRDFQRFSHDHGFEKPNDERALNLMNTCAVAVLEE-YPDIVFSYGYSDEYSF 80 (390)
Q Consensus 2 ~~~~~e~~k~~E~~~~l~p~~~~vvRlDG~~F~kft~~~~f~kP~D~r~~~am~~t~~~l~~~-~~~~~~ayt~SDEis~ 80 (390)
|+|+++|++++|....++|+++||+|||||+||+||+.|||+||||+++++||++||+.++.. +++|.++||+||||||
T Consensus 1 ~k~~~~~~~evya~~R~~P~t~iVlRiDGr~Fhk~tk~l~FeKPyD~~f~~lM~~tA~~lv~~~~~~i~LaYtfSDE~sf 80 (249)
T COG4021 1 AKSKFMYVREVYAHDRILPQTYIVLRIDGRGFHKFTKFLDFEKPYDERFLKLMNATAKNLVLKYGLDIILAYTFSDEISF 80 (249)
T ss_pred CCCcchhhhhhhhhhcCCCCceEEEEecChhhhHHHhhcCcCCcchHHHHHHHHHHHHHHHHHhCCCeEEEEecccceEE
Confidence 689999999999999999999999999999999999999999999999999999999966665 7888888888888877
Q ss_pred eeeccccccccchhhhhHHHHhhhHHHHHhhhhhccCCCCCCCCCcceeeeeeeCCHHHHHHHHHhhhhcccccccccce
Q 016392 81 VFKRTSKFYQRRASKILSLIVSFFTSVYVTKWKEFFPLKEFRYPPSFHSRVISCASIEVLQQYLAWRQNDCHVNNQYETC 160 (390)
Q Consensus 81 ~f~~~~~~f~gRv~KL~Sv~aS~~Ss~f~~~l~~~~~~~~l~~p~~FDaRvi~lp~~e~v~~Yl~wRq~da~RN~ln~~~ 160 (390)
+++.
T Consensus 81 l~~~---------------------------------------------------------------------------- 84 (249)
T COG4021 81 LLKS---------------------------------------------------------------------------- 84 (249)
T ss_pred Eeec----------------------------------------------------------------------------
Confidence 6444
Q ss_pred eeeeeecCCCCCCCchHHHHHHhHHHHHHHHhhhcceeeeecccceeeeeeeccccccccchhhhhHHHHHHHHhHhhhh
Q 016392 161 LWMLIKHGKSENEPNDEQALNLMNSCAVAVLEEFEDITFAYGVSDEYSFVLKNASMFYQRQASEIVSVIVSFFTSMYVVK 240 (390)
Q Consensus 161 ~~~Lr~eG~s~~kP~D~~~l~aM~~ta~~l~~~f~~i~~aYtqSDEIS~vf~~~~~~f~~R~~Kl~S~~aS~~Ss~f~~~ 240 (390)
++.+|+||++||.|+.||+|||+|+..
T Consensus 85 -----------------------------------------------------st~pF~gRveKL~Sv~~Sf~tS~f~r~ 111 (249)
T COG4021 85 -----------------------------------------------------STVPFNGRVEKLDSVFASFFTSAFTRL 111 (249)
T ss_pred -----------------------------------------------------CCccccchHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666
Q ss_pred hhhcCCCCCCCCCCCCCCceeecCChhhHHHHHHHhhhhhhHhhhHHHHHHHHHHcCCChhhHhhhccCCChHHHHHHHH
Q 016392 241 WKEFFPQKKLNYPPSFDGRAVCYPSSDIIRDYLAWRQVDCHINNQYNTCFWMLVKSGKSKSEAQGCLKGTQAREKNELLI 320 (390)
Q Consensus 241 ~~~~fp~~~l~~p~~FD~Rvv~~P~~~~v~dYl~WRq~d~~rN~l~n~~~w~l~~~G~s~~eA~~~L~G~~~~~k~ElLf 320 (390)
|.+++|.+ .+|+||+|+|.|| .+++.|||.|||.||||||||||+||+|+..|++++||+++|+||.+.+||||||
T Consensus 112 ~~~~~p~~---~~~sFDsR~V~~~-~~~i~dYf~wRQ~eawrN~L~s~tfW~L~~rgl~~~ea~erLrG~ks~e~heiLf 187 (249)
T COG4021 112 WAKFFPEK---HLPSFDSRCVAYP-LDTIPDYFHWRQVEAWRNNLYSTTFWQLIIRGLTPQEAEERLRGTKSNEKHEILF 187 (249)
T ss_pred hhccCCCC---CCCcccceEEecc-hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHcCCChHHHHHHhcccccchHHHHHH
Confidence 77777654 6799999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCcccccccceEEEEeeeeccccccccccce--eeeeeEEeecccCCCccccCcC
Q 016392 321 QKFGIDYSKLPLMFRQGSSIFRARTEKSVASENKSSVE--KVWNKVLVSHCNIIEPSFWMAH 380 (390)
Q Consensus 321 ~~~gIN~n~~P~~~r~Gs~i~r~~~~~~~~~~~~~~~~--~~R~~i~~~h~dii~~~fw~~~ 380 (390)
++||||||.+|+|||||+++||..+.... |...+... +.+..+...|+-.|++.||.-.
T Consensus 188 sefGIN~~r~P~wqkkG~~~yRvp~r~w~-p~~~~es~~~r~~~~~~i~~~~~iDe~fe~~~ 248 (249)
T COG4021 188 SEFGINYNREPEWQKKGVGVYRVPVRGWN-PIRDEESLVTRKGEILHINVIAQIDELFEGYM 248 (249)
T ss_pred HHhCCCcCCChHHHhcCceEEEccccccC-CcchhHHHHHhhhheeeeecceeccchhhhhc
Confidence 99999999999999999999999843332 43333333 3334455778888999999743
No 3
>PF04446 Thg1: tRNAHis guanylyltransferase; InterPro: IPR007537 The Thg1 protein from Saccharomyces cerevisiae (Baker's yeast) is responsible for adding a GMP residue to the 5' end of tRNA His [].; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=100.00 E-value=1e-46 Score=331.55 Aligned_cols=131 Identities=49% Similarity=0.942 Sum_probs=107.4
Q ss_pred cchhhhhccccCC--CCCCCeEEEEEeCCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHhCCCcEEEEeccceeeeee
Q 016392 5 KYEYVKSFEVEDE--IFSPNLLVVRIHGRDFQRFSHDHGFEKPNDERALNLMNTCAVAVLEEYPDIVFSYGYSDEYSFVF 82 (390)
Q Consensus 5 ~~e~~k~~E~~~~--l~p~~~~vvRlDG~~F~kft~~~~f~kP~D~r~~~am~~t~~~l~~~~~~~~~ayt~SDEis~~f 82 (390)
||||||.||.+.. |+|++|||||||||+|||||+.|+|+||||+|+++||++||++||++++++.+||||||||||||
T Consensus 1 k~~~vk~~E~~~~~~l~p~~~ivvRiDG~~F~kft~~~~f~KP~D~r~~~~M~~aa~~l~~~~~~~~~aY~~SDEiSfvf 80 (135)
T PF04446_consen 1 KYEYVKDFEQDDDLRLLPNTPIVVRIDGRGFHKFTKRHGFEKPNDERFLKAMNEAAKALMEEFPDIVLAYGQSDEISFVF 80 (135)
T ss_dssp -SGGGGGG----B----TTSEEEEEEEETTHHHHHHHTT--SS--HHHHHHHHHHHHHHHHHSSSEEEEEEETTEEEEEE
T ss_pred CccHHHhhccccccccCCCCeEEEEEeCcchhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEcCCeeEEEE
Confidence 7999999998887 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccchhhhhHHHHhhhHHHHHhhhhhccCCCCCC--CCCcceeeeeeeC
Q 016392 83 KRTSKFYQRRASKILSLIVSFFTSVYVTKWKEFFPLKEFR--YPPSFHSRVISCA 135 (390)
Q Consensus 83 ~~~~~~f~gRv~KL~Sv~aS~~Ss~f~~~l~~~~~~~~l~--~p~~FDaRvi~lp 135 (390)
.+..+.|+||++||+|++||++||+|+.+|.+++|+.+|. .|++||||+|++|
T Consensus 81 ~~~~~~f~~R~~Kl~S~~aS~~ss~f~~~~~~~~~~~~l~~~~~~~FD~R~v~~P 135 (135)
T PF04446_consen 81 RKSTPLFNRRVEKLVSVVASLFSSSFSFYWSKFFPDTPLEYPHPPSFDARVVCYP 135 (135)
T ss_dssp -TT--TTTTBHHHHHHHHHHHHHHHHHHTHHHH-SSS---S-----EEEEEEEES
T ss_pred CCCChhhcchhhhHHHHHHHHHHHHHHHHHHHhccCCccCCCCccccCccEEeCc
Confidence 9999999999999999999999999999999999998775 5599999999997
No 4
>PF14413 Thg1C: Thg1 C terminal domain; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=100.00 E-value=1.8e-44 Score=311.53 Aligned_cols=117 Identities=49% Similarity=0.877 Sum_probs=90.3
Q ss_pred ChhhHHHHHHHhhhhhhHhhhHHHHHHHHHHcCCChhhHhhhccCCChHHHHHHHHHHhCCCCCCcccccccceEEEEee
Q 016392 265 SSDIIRDYLAWRQVDCHINNQYNTCFWMLVKSGKSKSEAQGCLKGTQAREKNELLIQKFGIDYSKLPLMFRQGSSIFRAR 344 (390)
Q Consensus 265 ~~~~v~dYl~WRq~d~~rN~l~n~~~w~l~~~G~s~~eA~~~L~G~~~~~k~ElLf~~~gIN~n~~P~~~r~Gs~i~r~~ 344 (390)
+.++|+|||+|||+|||||||||||||+||++|+|++||++.|+||+++|||||||++||||||++|+||||||+|+|+.
T Consensus 1 ~~~~v~dYl~WRQ~D~hrN~l~~~~fw~Lv~~g~s~~ea~~~L~G~~~~~knElLf~~fGINyn~~P~~~RrGs~i~r~~ 80 (120)
T PF14413_consen 1 SDEEVRDYLSWRQADCHRNNLYNTCFWALVKSGFSPKEAHKRLKGTKSSDKNELLFSRFGINYNNLPAWFRRGSCIYREY 80 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHTT--HHHHHHHHHHCC---GGGS-HHHHH-EEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCCHHHHHHHHHHHhCCChhhCcHHHcCCeEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred eecccc-ccccccceeee--eeEEeecccCCCccccCcCCCcc
Q 016392 345 TEKSVA-SENKSSVEKVW--NKVLVSHCNIIEPSFWMAHPSIL 384 (390)
Q Consensus 345 ~~~~~~-~~~~~~~~~~R--~~i~~~h~dii~~~fw~~~~~~l 384 (390)
++. |.+++.+++.| ..+++.|+|||+++||++||+||
T Consensus 81 ---~~~~~~~~~~~~~~r~r~~~~~~~~d~i~~~Fw~~~~~~l 120 (120)
T PF14413_consen 81 ---EGYNPKTGEKVTVKRRRDWIIPLHSDIIGDEFWEEHPYLL 120 (120)
T ss_dssp -------SS--SEEEEEEECEEEEEE---SSSHHHHHH-TCCC
T ss_pred ---CCCCccccCcCcceeecccceecccCcccHHHHHhChhcC
Confidence 444 66666666555 45889999999999999999997
No 5
>PF04446 Thg1: tRNAHis guanylyltransferase; InterPro: IPR007537 The Thg1 protein from Saccharomyces cerevisiae (Baker's yeast) is responsible for adding a GMP residue to the 5' end of tRNA His [].; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=99.97 E-value=2e-32 Score=241.02 Aligned_cols=112 Identities=42% Similarity=0.783 Sum_probs=91.8
Q ss_pred ccccccceeeeeeecCCCC---------CCCchHHHHHHhHHHHHHHHhhhcceeeeecccceeeeeeeccccccccchh
Q 016392 153 VNNQYETCLWMLIKHGKSE---------NEPNDEQALNLMNSCAVAVLEEFEDITFAYGVSDEYSFVLKNASMFYQRQAS 223 (390)
Q Consensus 153 RN~ln~~~~~~Lr~eG~s~---------~kP~D~~~l~aM~~ta~~l~~~f~~i~~aYtqSDEIS~vf~~~~~~f~~R~~ 223 (390)
+..|-..|+.++|.||++| +||+|+++|++|++||.+||++++|+++||||||||||||.+++.+|+||++
T Consensus 13 ~~~l~p~~~ivvRiDG~~F~kft~~~~f~KP~D~r~~~~M~~aa~~l~~~~~~~~~aY~~SDEiSfvf~~~~~~f~~R~~ 92 (135)
T PF04446_consen 13 DLRLLPNTPIVVRIDGRGFHKFTKRHGFEKPNDERFLKAMNEAAKALMEEFPDIVLAYGQSDEISFVFRKSTPLFNRRVE 92 (135)
T ss_dssp B----TTSEEEEEEEETTHHHHHHHTT--SS--HHHHHHHHHHHHHHHHHSSSEEEEEEETTEEEEEE-TT--TTTTBHH
T ss_pred ccccCCCCeEEEEEeCcchhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEcCCeeEEEECCCChhhcchhh
Confidence 3346778899999999985 6999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhHhhhhhhhcCCCCCCCCC--CCCCCceeecC
Q 016392 224 EIVSVIVSFFTSMYVVKWKEFFPQKKLNYP--PSFDGRAVCYP 264 (390)
Q Consensus 224 Kl~S~~aS~~Ss~f~~~~~~~fp~~~l~~p--~~FD~Rvv~~P 264 (390)
||+|++||+|||.|+++|.++||+++|..+ |+||||+|+||
T Consensus 93 Kl~S~~aS~~ss~f~~~~~~~~~~~~l~~~~~~~FD~R~v~~P 135 (135)
T PF04446_consen 93 KLVSVVASLFSSSFSFYWSKFFPDTPLEYPHPPSFDARVVCYP 135 (135)
T ss_dssp HHHHHHHHHHHHHHHHTHHHH-SSS---S-----EEEEEEEES
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCccCCCCccccCccEEeCc
Confidence 999999999999999999999999877655 99999999998
No 6
>COG4021 Uncharacterized conserved protein [Function unknown]
Probab=99.92 E-value=1.8e-26 Score=213.80 Aligned_cols=133 Identities=31% Similarity=0.497 Sum_probs=119.7
Q ss_pred CCCCCcHHHHHHHHHHHH---HHHHHhCCCcEEEEeccceeeeeeeccccccccchhhhhHHHHhhhHHHHHhhhhhccC
Q 016392 41 GFEKPNDERALNLMNTCA---VAVLEEYPDIVFSYGYSDEYSFVFKRTSKFYQRRASKILSLIVSFFTSVYVTKWKEFFP 117 (390)
Q Consensus 41 ~f~kP~D~r~~~am~~t~---~~l~~~~~~~~~ayt~SDEis~~f~~~~~~f~gRv~KL~Sv~aS~~Ss~f~~~l~~~~~ 117 (390)
.|.+.|...+.++|.+.- ..++++++++++..+.|++. |+|||+||+||+||++||+|+..+.+++|
T Consensus 48 ~f~~lM~~tA~~lv~~~~~~i~LaYtfSDE~sfl~~~st~p----------F~gRveKL~Sv~~Sf~tS~f~r~~~~~~p 117 (249)
T COG4021 48 RFLKLMNATAKNLVLKYGLDIILAYTFSDEISFLLKSSTVP----------FNGRVEKLDSVFASFFTSAFTRLWAKFFP 117 (249)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecccceEEEeecCCcc----------ccchHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 577889999998888744 46788999999999998886 89999999999999999999998877776
Q ss_pred CCCCCCCCcceeeeeeeCCHHHHHHHHHhhhhcccccccccceeeeeeecCCCCCCCchHHHHHHhHHHHHH
Q 016392 118 LKEFRYPPSFHSRVISCASIEVLQQYLAWRQNDCHVNNQYETCLWMLIKHGKSENEPNDEQALNLMNSCAVA 189 (390)
Q Consensus 118 ~~~l~~p~~FDaRvi~lp~~e~v~~Yl~wRq~da~RN~ln~~~~~~Lr~eG~s~~kP~D~~~l~aM~~ta~~ 189 (390)
.+ ++++||||+|++| .+++++||.|||.|||||+|++|.||+||..|+..+++. .-++||++..+|
T Consensus 118 ~~---~~~sFDsR~V~~~-~~~i~dYf~wRQ~eawrN~L~s~tfW~L~~rgl~~~ea~--erLrG~ks~e~h 183 (249)
T COG4021 118 EK---HLPSFDSRCVAYP-LDTIPDYFHWRQVEAWRNNLYSTTFWQLIIRGLTPQEAE--ERLRGTKSNEKH 183 (249)
T ss_pred CC---CCCcccceEEecc-hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHcCCChHHHH--HHhcccccchHH
Confidence 54 7899999999998 999999999999999999999999999999999888665 889999998876
No 7
>KOG2721 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.7e-20 Score=174.41 Aligned_cols=132 Identities=45% Similarity=0.839 Sum_probs=107.9
Q ss_pred CcHHHHHHHHHHHHHHHHH--hCCCcEEEEeccceeeeeeeccccccccchhhhhHHHHhhhHHHHHhhhhhccCCCCCC
Q 016392 45 PNDERALNLMNTCAVAVLE--EYPDIVFSYGYSDEYSFVFKRTSKFYQRRASKILSLIVSFFTSVYVTKWKEFFPLKEFR 122 (390)
Q Consensus 45 P~D~r~~~am~~t~~~l~~--~~~~~~~ayt~SDEis~~f~~~~~~f~gRv~KL~Sv~aS~~Ss~f~~~l~~~~~~~~l~ 122 (390)
.|...+...|.+-..-++. .+++ +.|. |+.++.+|.+|-.||.|.+||+++|.+...|++++|+.+|.
T Consensus 47 LMnscA~~Vl~ef~DIv~AyG~SDE--YSFV--------~kk~t~~fkRr~sKi~s~v~SfF~s~YV~~W~~ffp~~~L~ 116 (260)
T KOG2721|consen 47 LMNSCASAVLEEFPDIVFAYGYSDE--YSFV--------FKKSTELFKRRASKILSLVASFFASVYVTKWKKFFPHLKLL 116 (260)
T ss_pred HHHHHHHHHHHhccceEEEeccCcc--eeee--------eccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 4566666666654433333 3565 3333 35667789999999999999999999999999999999999
Q ss_pred CCCcceeeeeeeCCHHHHHHHHHhhhhcccccccccceeeeeee-cCCCCCCCchHHHHHHhHHHHH
Q 016392 123 YPPSFHSRVISCASIEVLQQYLAWRQNDCHVNNQYETCLWMLIK-HGKSENEPNDEQALNLMNSCAV 188 (390)
Q Consensus 123 ~p~~FDaRvi~lp~~e~v~~Yl~wRq~da~RN~ln~~~~~~Lr~-eG~s~~kP~D~~~l~aM~~ta~ 188 (390)
.|++||+||+..|+.+...+||.|||.|||.|+++++|||+|++ .|++...+- ..+++-..+.+
T Consensus 117 y~PsFdgrvV~yps~q~LkdYLaWRq~DcHinNlYnT~fWmLv~ksG~t~~qaq--~~Lkgt~s~ek 181 (260)
T KOG2721|consen 117 YAPSFDGRVVSYPSVQVLKDYLAWRQVDCHINNLYNTCFWMLVKKSGKTPSQAQ--EILKGTFSAEK 181 (260)
T ss_pred cCCCCCCcEEecccHHHHHHHHHHHhhcccccchhhHHHHHHHHHhCCChHHHH--HHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999 788776443 56666665553
No 8
>PF14413 Thg1C: Thg1 C terminal domain; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=99.29 E-value=1.2e-13 Score=119.89 Aligned_cols=52 Identities=44% Similarity=0.804 Sum_probs=43.3
Q ss_pred CHHHHHHHHHhhhhcccccccccceeeeeeecCCCCCCCchHHHHHHhHHHHHH
Q 016392 136 SIEVLQQYLAWRQNDCHVNNQYETCLWMLIKHGKSENEPNDEQALNLMNSCAVA 189 (390)
Q Consensus 136 ~~e~v~~Yl~wRq~da~RN~ln~~~~~~Lr~eG~s~~kP~D~~~l~aM~~ta~~ 189 (390)
|.++|.+||.|||+|||||+|++||||+|+.+|.+.+++. ..|++|.++.++
T Consensus 1 ~~~~v~dYl~WRQ~D~hrN~l~~~~fw~Lv~~g~s~~ea~--~~L~G~~~~~kn 52 (120)
T PF14413_consen 1 SDEEVRDYLSWRQADCHRNNLYNTCFWALVKSGFSPKEAH--KRLKGTKSSDKN 52 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHH--HHHTT--HHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--HHHcCCCHHHHH
Confidence 4689999999999999999999999999999999998877 889999999866
No 9
>COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis]
Probab=16.30 E-value=53 Score=32.77 Aligned_cols=13 Identities=46% Similarity=0.974 Sum_probs=11.5
Q ss_pred EEEeCCCcccccc
Q 016392 26 VRIHGRDFQRFSH 38 (390)
Q Consensus 26 vRlDG~~F~kft~ 38 (390)
+|+|||+|+.|-.
T Consensus 23 ~R~DGR~~~efR~ 35 (272)
T COG2123 23 IRIDGRSFDEFRP 35 (272)
T ss_pred cccCCCCcccccc
Confidence 6999999999865
No 10
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=15.94 E-value=5.6e+02 Score=20.17 Aligned_cols=33 Identities=30% Similarity=0.267 Sum_probs=25.4
Q ss_pred HHcCCChhhHhhhccCCChHHHHHHHHHHhCCCCC
Q 016392 294 VKSGKSKSEAQGCLKGTQAREKNELLIQKFGIDYS 328 (390)
Q Consensus 294 ~~~G~s~~eA~~~L~G~~~~~k~ElLf~~~gIN~n 328 (390)
.++..|-.+|. ++-|++..+-.++|-++ ||.++
T Consensus 31 ~~g~iS~gkAA-elag~s~~eF~~~L~~~-gI~~~ 63 (76)
T PF03683_consen 31 EEGKISLGKAA-ELAGMSRWEFLELLKER-GIPIN 63 (76)
T ss_pred HcCCCCHHHHH-HHhCCCHHHHHHHHHHC-CCCCC
Confidence 35555776655 78899999999999865 99855
Done!