Query 016392
Match_columns 390
No_of_seqs 189 out of 437
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:49:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3otd_A TRNA(His) guanylyltrans 100.0 2.5E-95 9E-100 696.1 18.8 258 1-387 1-268 (269)
2 3otd_A TRNA(His) guanylyltrans 99.9 3E-29 1E-33 240.1 2.1 141 42-194 50-195 (269)
3 2k0m_A Uncharacterized protein 9.5 1.1E+02 0.0036 25.1 1.3 14 156-169 73-86 (104)
4 2cxy_A BAF250B subunit, HBAF25 9.0 1.3E+02 0.0044 24.8 1.6 49 86-134 3-53 (125)
5 1qp2_A Protein (PSAE protein); 7.1 1.6E+02 0.0056 22.5 1.3 20 19-38 31-50 (70)
6 1x4o_A Splicing factor 4; stru 7.0 2.8E+02 0.0095 21.1 2.7 27 41-67 8-34 (78)
7 2kk0_A AT-rich interactive dom 6.6 2.5E+02 0.0084 23.8 2.4 48 87-134 17-66 (145)
8 2k36_A Protein K7; viral prote 6.5 1.8E+02 0.0061 25.2 1.4 12 267-278 28-39 (149)
9 1whu_A Polynucleotide phosphor 6.2 92 0.0031 24.8 -0.6 10 26-35 92-101 (104)
10 3nwn_A Kinesin-like protein KI 6.0 3.5E+02 0.012 26.3 3.4 29 176-204 86-114 (359)
No 1
>3otd_A TRNA(His) guanylyltransferase; polymerase-like PALM domain, catalytic carboxylates; 2.28A {Homo sapiens} PDB: 3otc_A 3otb_A 3ote_A
Probab=100.00 E-value=2.5e-95 Score=696.14 Aligned_cols=258 Identities=47% Similarity=0.906 Sum_probs=227.0
Q ss_pred CCCCcchhhhhccccCCCCCCCeEEEEEeCCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHhCCCcEEEEeccceeee
Q 016392 1 MANSKYEYVKSFEVEDEIFSPNLLVVRIHGRDFQRFSHDHGFEKPNDERALNLMNTCAVAVLEEYPDIVFSYGYSDEYSF 80 (390)
Q Consensus 1 ~~~~~~e~~k~~E~~~~l~p~~~~vvRlDG~~F~kft~~~~f~kP~D~r~~~am~~t~~~l~~~~~~~~~ayt~SDEis~ 80 (390)
||||||||||.||.++.|+|++|||||||||+|||||+.|+|+||||+|+++||++||+.||+.+++|.+||||||||||
T Consensus 1 ma~sk~eyvr~fE~~d~llp~~~iVVRiDGr~F~kfs~~~~F~KPnD~r~l~lM~~aA~~lm~~~~~i~~aYg~SDEiSf 80 (269)
T 3otd_A 1 MAKSKFEYVRDFEADDTCLAHCWVVVRLDGRNFHRFAEKHNFAKPNDSRALQLMTKCAQTVMEELEDIVIAYGQSDEYSF 80 (269)
T ss_dssp --CCSSGGGGGGCCCCBCCTTSEEEEEEEETTHHHHHHHTTCCSSCCHHHHHHHHHHHHHHHHHSSSEEEEEEETTEEEE
T ss_pred CCCccchhhhhhccccccCCCCeEEEEEeCCccchhhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEecCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999887888888777766
Q ss_pred eeeccccccccchhhhhHHHHhhhHHHHHhhhhhccCCCCCCCCCcceeeeeeeCCHHHHHHHHHhhhhcccccccccce
Q 016392 81 VFKRTSKFYQRRASKILSLIVSFFTSVYVTKWKEFFPLKEFRYPPSFHSRVISCASIEVLQQYLAWRQNDCHVNNQYETC 160 (390)
Q Consensus 81 ~f~~~~~~f~gRv~KL~Sv~aS~~Ss~f~~~l~~~~~~~~l~~p~~FDaRvi~lp~~e~v~~Yl~wRq~da~RN~ln~~~ 160 (390)
|
T Consensus 81 v------------------------------------------------------------------------------- 81 (269)
T 3otd_A 81 V------------------------------------------------------------------------------- 81 (269)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred E-------------------------------------------------------------------------------
Confidence 5
Q ss_pred eeeeeecCCCCCCCchHHHHHHhHHHHHHHHhhhcceeeeecccceeeeeeeccccccccchhhhhHHHHHHHHhHhhhh
Q 016392 161 LWMLIKHGKSENEPNDEQALNLMNSCAVAVLEEFEDITFAYGVSDEYSFVLKNASMFYQRQASEIVSVIVSFFTSMYVVK 240 (390)
Q Consensus 161 ~~~Lr~eG~s~~kP~D~~~l~aM~~ta~~l~~~f~~i~~aYtqSDEIS~vf~~~~~~f~~R~~Kl~S~~aS~~Ss~f~~~ 240 (390)
|.+.+.+|+||++||+|++||+|||.|+++
T Consensus 82 --------------------------------------------------f~~~~~~f~rR~~KL~S~~aS~fSs~y~~~ 111 (269)
T 3otd_A 82 --------------------------------------------------FKRKTNWFKRRASKFMTHVASQFASSYVFY 111 (269)
T ss_dssp --------------------------------------------------ECTTCCTTTTBHHHHHHHHHHHHHHHHHHT
T ss_pred --------------------------------------------------ECCCChhhcchhHHHHHHHHHHHHHHHHHH
Confidence 555667889999999999999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCceeecCChhhHHHHHHHhhhhhhHhhhHHHHHHHHH-HcCCChhhHhhhccCCChHHHHHHH
Q 016392 241 WKEFFPQKKLNYPPSFDGRAVCYPSSDIIRDYLAWRQVDCHINNQYNTCFWMLV-KSGKSKSEAQGCLKGTQAREKNELL 319 (390)
Q Consensus 241 ~~~~fp~~~l~~p~~FD~Rvv~~P~~~~v~dYl~WRq~d~~rN~l~n~~~w~l~-~~G~s~~eA~~~L~G~~~~~k~ElL 319 (390)
|+++||+++|.+||+||||+|+||+.++++|||+|||+|||||||||||||+|| ++|+|++||+++|+||.++||||||
T Consensus 112 w~~~fp~~~L~~pp~FD~Rvv~~P~~~~v~dYl~WRQ~D~h~Nnlynt~fw~Lv~~~G~s~~eA~~~L~Gt~s~dknEiL 191 (269)
T 3otd_A 112 WRDYFEDQPLLYPPGFDGRVVVYPSNQTLKDYLSWRQADCHINNLYNTVFWALIQQSGLTPVQAQGRLQGTLAADKNEIL 191 (269)
T ss_dssp HHHHCSSSCCCSCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHhCCCccccCCCCCceeEEeCCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHcCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHhCCCCCCcccccccceEEEEeeeecccc---------ccccccceeeeeeEEeecccCCCccccCcCCCccCCC
Q 016392 320 IQKFGIDYSKLPLMFRQGSSIFRARTEKSVA---------SENKSSVEKVWNKVLVSHCNIIEPSFWMAHPSILNEE 387 (390)
Q Consensus 320 f~~~gIN~n~~P~~~r~Gs~i~r~~~~~~~~---------~~~~~~~~~~R~~i~~~h~dii~~~fw~~~~~~l~~~ 387 (390)
|++||||||++|+||||||+|+|+.++.... .+.+.++++.|++|+++|+|||+|+||++|||||.++
T Consensus 192 f~~fGINyn~~P~~~rkGs~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~dii~d~fw~~~~~~l~~~ 268 (269)
T 3otd_A 192 FSEFNINYNNELPMYRKGTVLIWQKVDEVMTKEIKLPTEMEGKKMAVTRTRTKPVPLHCDIIGDAFWKEHPEILDED 268 (269)
T ss_dssp HHHHCCCGGGSCHHHHHCEEEEEC---------------------------CCEEEECCCCSSHHHHHHCTHHHHSC
T ss_pred HHHcCCChhhCcHhHcceEEEEEeeeecccccccccccccccccccccccccceeEEecCCcCchhhhhCchhccCC
Confidence 9999999999999999999999998775432 1234556777788999999999999999999999865
No 2
>3otd_A TRNA(His) guanylyltransferase; polymerase-like PALM domain, catalytic carboxylates; 2.28A {Homo sapiens} PDB: 3otc_A 3otb_A 3ote_A
Probab=99.95 E-value=3e-29 Score=240.15 Aligned_cols=141 Identities=30% Similarity=0.598 Sum_probs=124.1
Q ss_pred CCCCcHHHHHHHHHHHH--HHHHHhCCCcEEEEeccceeeeeeeccccccccchhhhhHHHHhhhHHHHHhhhhhccCCC
Q 016392 42 FEKPNDERALNLMNTCA--VAVLEEYPDIVFSYGYSDEYSFVFKRTSKFYQRRASKILSLIVSFFTSVYVTKWKEFFPLK 119 (390)
Q Consensus 42 f~kP~D~r~~~am~~t~--~~l~~~~~~~~~ayt~SDEis~~f~~~~~~f~gRv~KL~Sv~aS~~Ss~f~~~l~~~~~~~ 119 (390)
+-+.|...+..+|.+-. ...+++++++++.|..+ ..+|+||++||+|++||++||+|+.+|++++|+.
T Consensus 50 ~l~lM~~aA~~lm~~~~~i~~aYg~SDEiSfvf~~~----------~~~f~rR~~KL~S~~aS~fSs~y~~~w~~~fp~~ 119 (269)
T 3otd_A 50 ALQLMTKCAQTVMEELEDIVIAYGQSDEYSFVFKRK----------TNWFKRRASKFMTHVASQFASSYVFYWRDYFEDQ 119 (269)
T ss_dssp HHHHHHHHHHHHHHHSSSEEEEEEETTEEEEEECTT----------CCTTTTBHHHHHHHHHHHHHHHHHHTHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEecCcEEEEEECCC----------ChhhcchhHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 45578888888888622 44566899999999873 4579999999999999999999999999999999
Q ss_pred CCCCCCcceeeeeeeCCHHHHHHHHHhhhhcccccccccceeeeee-ecCCCCCCCchHHHHHHhHHHHHH--HHhhh
Q 016392 120 EFRYPPSFHSRVISCASIEVLQQYLAWRQNDCHVNNQYETCLWMLI-KHGKSENEPNDEQALNLMNSCAVA--VLEEF 194 (390)
Q Consensus 120 ~l~~p~~FDaRvi~lp~~e~v~~Yl~wRq~da~RN~ln~~~~~~Lr-~eG~s~~kP~D~~~l~aM~~ta~~--l~~~f 194 (390)
+|+.|++||||||++|+.+++.+||.|||.|||||+|+|||||+|+ ++|++.+++. ..|+++.++.++ |+++|
T Consensus 120 ~L~~pp~FD~Rvv~~P~~~~v~dYl~WRQ~D~h~Nnlynt~fw~Lv~~~G~s~~eA~--~~L~Gt~s~dknEiLf~~f 195 (269)
T 3otd_A 120 PLLYPPGFDGRVVVYPSNQTLKDYLSWRQADCHINNLYNTVFWALIQQSGLTPVQAQ--GRLQGTLAADKNEILFSEF 195 (269)
T ss_dssp CCCSCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHH--HHHTTCCHHHHHHHHHHHH
T ss_pred cccCCCCCceeEEeCCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHH--HHHcCCcHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999 6899987664 889999998865 44443
No 3
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=9.49 E-value=1.1e+02 Score=25.07 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=12.4
Q ss_pred cccceeeeeeecCC
Q 016392 156 QYETCLWMLIKHGK 169 (390)
Q Consensus 156 ln~~~~~~Lr~eG~ 169 (390)
..+.|||.+|.||-
T Consensus 73 ~~srCFfvvR~DGt 86 (104)
T 2k0m_A 73 YGTQCFWILRTDGS 86 (104)
T ss_dssp SSCEEEEEEETTSC
T ss_pred CCCcEEEEEEeCCC
Confidence 46899999999996
No 4
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=8.97 E-value=1.3e+02 Score=24.85 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=35.2
Q ss_pred ccccccchhhhhHHHHhhhHHHHHhhhhhccC--CCCCCCCCcceeeeeee
Q 016392 86 SKFYQRRASKILSLIVSFFTSVYVTKWKEFFP--LKEFRYPPSFHSRVISC 134 (390)
Q Consensus 86 ~~~f~gRv~KL~Sv~aS~~Ss~f~~~l~~~~~--~~~l~~p~~FDaRvi~l 134 (390)
...|.-|+|+|..+-+.--...|-..|.+++. ...+..++.+++|.+.|
T Consensus 3 ~~~f~~r~Q~L~el~~~~~~~~Fl~~L~~F~~~rG~~~~~~P~i~gk~lDL 53 (125)
T 2cxy_A 3 SGSSGEKITKVYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDL 53 (125)
T ss_dssp ----CCBTTHHHHSCCCTTHHHHHHHHHHHHHHTTCCCCBCCEETTEECCH
T ss_pred CCccccceeeHHhccCchhHHHHHHHHHHHHHHcCCCCCCCeeECCEeecH
Confidence 45688899999999987666677777766663 34466778899999988
No 5
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=7.08 E-value=1.6e+02 Score=22.48 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=15.8
Q ss_pred CCCCeEEEEEeCCCcccccc
Q 016392 19 FSPNLLVVRIHGRDFQRFSH 38 (390)
Q Consensus 19 ~p~~~~vvRlDG~~F~kft~ 38 (390)
.-.-|++||.||.++.....
T Consensus 31 ~~~ypV~VrFekvNy~g~~T 50 (70)
T 1qp2_A 31 GIKYPVIVRFEKVNYSGINT 50 (70)
T ss_dssp SCSCSEEEECSSCCSSCCSE
T ss_pred CcEeeEEEEecccccccccc
Confidence 34569999999999977553
No 6
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=7.04 E-value=2.8e+02 Score=21.07 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 016392 41 GFEKPNDERALNLMNTCAVAVLEEYPD 67 (390)
Q Consensus 41 ~f~kP~D~r~~~am~~t~~~l~~~~~~ 67 (390)
...-|-|+..+..+..+|.++.+.+++
T Consensus 8 ~v~pP~d~~~~~iIdktA~fVaknG~~ 34 (78)
T 1x4o_A 8 KVSPPEDEEAKNLAEKLARFIADGGPE 34 (78)
T ss_dssp CSCCCSCHHHHHHHHHHHHHHHHSCTT
T ss_pred CCcCcCCHHHHHHHHHHHHHHHHcCHH
Confidence 356789999999999999999998876
No 7
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=6.60 E-value=2.5e+02 Score=23.81 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=37.8
Q ss_pred cccccchhhhhHHHHhhhHHHHHhhhhhccC--CCCCCCCCcceeeeeee
Q 016392 87 KFYQRRASKILSLIVSFFTSVYVTKWKEFFP--LKEFRYPPSFHSRVISC 134 (390)
Q Consensus 87 ~~f~gRv~KL~Sv~aS~~Ss~f~~~l~~~~~--~~~l~~p~~FDaRvi~l 134 (390)
-.|.-|+|+|..+-+.--...|-..|.+++. ...+..++.+++|.+.|
T Consensus 17 f~F~~r~q~L~eL~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~vDL 66 (145)
T 2kk0_A 17 WTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDL 66 (145)
T ss_dssp CCCCCCCTHHHHTTCCHHHHHHHHHHHHHHHHTTCCCSSCCEETTEECCH
T ss_pred ceecCccccHhhccCchhHHHHHHHHHHHHHHcCCCCccceeECCEEecH
Confidence 3577899999999887767778777777663 34466788999999988
No 8
>2k36_A Protein K7; viral protein; NMR {Vaccinia virus} PDB: 3jrv_A
Probab=6.46 E-value=1.8e+02 Score=25.21 Aligned_cols=12 Identities=42% Similarity=1.185 Sum_probs=9.9
Q ss_pred hhHHHHHHHhhh
Q 016392 267 DIIRDYLAWRQV 278 (390)
Q Consensus 267 ~~v~dYl~WRq~ 278 (390)
..+.+||.||+-
T Consensus 28 ~il~~Yf~WR~~ 39 (149)
T 2k36_A 28 DLIDEYITWRNH 39 (149)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhcc
Confidence 457799999995
No 9
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=6.15 E-value=92 Score=24.79 Aligned_cols=10 Identities=40% Similarity=0.454 Sum_probs=8.0
Q ss_pred EEEeCCCccc
Q 016392 26 VRIHGRDFQR 35 (390)
Q Consensus 26 vRlDG~~F~k 35 (390)
+|+|||+...
T Consensus 92 ~RiDGR~~de 101 (104)
T 1whu_A 92 KRCDGRDSGP 101 (104)
T ss_dssp CSCCCCCSSC
T ss_pred cCCCCCCccc
Confidence 6999998754
No 10
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=5.96 E-value=3.5e+02 Score=26.33 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=20.7
Q ss_pred hHHHHHHhHHHHHHHHhhhcceeeeeccc
Q 016392 176 DEQALNLMNSCAVAVLEEFEDITFAYGVS 204 (390)
Q Consensus 176 D~~~l~aM~~ta~~l~~~f~~i~~aYtqS 204 (390)
++.+-.....-...+++-++.++|||||+
T Consensus 86 ~~Vy~~~~~plv~~~l~G~N~tifAYGQT 114 (359)
T 3nwn_A 86 DLVYETVAKDVVSQALDGYNGTIMCYGQT 114 (359)
T ss_dssp HHHHHHHTHHHHHHHHTTCCEEEEEEEST
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 34444444555667778889999999996
Done!