Query 016392
Match_columns 390
No_of_seqs 189 out of 437
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 12:49:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016392.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016392hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a7ia1 g.39.1.3 (A:8-35) Cyst 18.3 13 0.00092 21.9 0.1 10 26-35 16-25 (28)
2 d1eucb1 c.23.4.1 (B:246-393) S 13.2 37 0.0027 27.4 1.8 18 18-35 101-118 (148)
3 d2nu7b1 c.23.4.1 (B:239-388) S 11.1 52 0.0038 26.6 2.1 17 19-35 102-118 (150)
4 d1b8ta1 g.39.1.3 (A:1-35) Cyst 10.2 31 0.0022 21.2 0.2 10 26-35 23-32 (35)
5 d1e3ha1 a.4.9.1 (A:263-345) Po 8.6 23 0.0017 25.4 -1.1 7 26-32 76-82 (83)
6 d2nn6e1 d.14.1.4 (E:5-191) Exo 8.2 30 0.0022 27.9 -0.6 13 26-38 18-30 (187)
7 d2cuqa2 g.39.1.3 (A:8-42) Four 8.2 34 0.0025 21.3 -0.2 12 323-335 21-32 (35)
8 d2nn6b1 d.14.1.4 (B:6-150) Exo 8.2 31 0.0022 26.7 -0.5 12 26-37 6-17 (145)
9 d2ba0d1 d.14.1.4 (D:10-153) Ex 7.7 31 0.0023 26.5 -0.7 12 26-37 7-18 (144)
10 d2nn6c1 d.14.1.4 (C:7-187) Exo 7.6 31 0.0022 27.3 -0.8 13 26-38 16-28 (181)
No 1
>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=18.32 E-value=13 Score=21.95 Aligned_cols=10 Identities=50% Similarity=0.963 Sum_probs=8.7
Q ss_pred EEEeCCCccc
Q 016392 26 VRIHGRDFQR 35 (390)
Q Consensus 26 vRlDG~~F~k 35 (390)
|.-||++|||
T Consensus 16 vqc~grsfhk 25 (28)
T d1a7ia1 16 VQCDGRSFHR 25 (28)
T ss_dssp EEETTEEEES
T ss_pred eeecCceecc
Confidence 6679999998
No 2
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=13.23 E-value=37 Score=27.45 Aligned_cols=18 Identities=28% Similarity=0.384 Sum_probs=14.7
Q ss_pred CCCCCeEEEEEeCCCccc
Q 016392 18 IFSPNLLVVRIHGRDFQR 35 (390)
Q Consensus 18 l~p~~~~vvRlDG~~F~k 35 (390)
+.+..|+||||.|-+...
T Consensus 101 ~~~~iPiVVRL~Gtn~ee 118 (148)
T d1eucb1 101 LELKVPLVVRLEGTNVHE 118 (148)
T ss_dssp HTCCSCEEEEEESTTHHH
T ss_pred cCCCccEEEEeccCChHH
Confidence 457789999999987654
No 3
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.11 E-value=52 Score=26.56 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.1
Q ss_pred CCCCeEEEEEeCCCccc
Q 016392 19 FSPNLLVVRIHGRDFQR 35 (390)
Q Consensus 19 ~p~~~~vvRlDG~~F~k 35 (390)
.++.|||||+.|-+...
T Consensus 102 ~~~iPiVVRl~Gtn~ee 118 (150)
T d2nu7b1 102 GVNVPVVVRLEGNNAEL 118 (150)
T ss_dssp TCCSCEEEEEESTTHHH
T ss_pred CCCCcEEEEecCCCHHH
Confidence 46789999999998844
No 4
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.23 E-value=31 Score=21.23 Aligned_cols=10 Identities=30% Similarity=0.733 Sum_probs=8.6
Q ss_pred EEEeCCCccc
Q 016392 26 VRIHGRDFQR 35 (390)
Q Consensus 26 vRlDG~~F~k 35 (390)
|.-||++|||
T Consensus 23 vqc~g~sfhk 32 (35)
T d1b8ta1 23 VQCEGSSFHK 32 (35)
T ss_dssp EEETTEEECT
T ss_pred eeecCccccc
Confidence 5679999998
No 5
>d1e3ha1 a.4.9.1 (A:263-345) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 {Streptomyces antibioticus [TaxId: 1890]}
Probab=8.62 E-value=23 Score=25.45 Aligned_cols=7 Identities=57% Similarity=0.895 Sum_probs=5.4
Q ss_pred EEEeCCC
Q 016392 26 VRIHGRD 32 (390)
Q Consensus 26 vRlDG~~ 32 (390)
+|+|||+
T Consensus 76 ~RiDGR~ 82 (83)
T d1e3ha1 76 KRIDGRG 82 (83)
T ss_dssp BCTTSCB
T ss_pred CCCCCCC
Confidence 5888886
No 6
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.24 E-value=30 Score=27.90 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=10.7
Q ss_pred EEEeCCCcccccc
Q 016392 26 VRIHGRDFQRFSH 38 (390)
Q Consensus 26 vRlDG~~F~kft~ 38 (390)
+|.|||.|..+=.
T Consensus 18 iR~DGR~~~e~R~ 30 (187)
T d2nn6e1 18 LRVDGRGCEDYRC 30 (187)
T ss_dssp CCSSSCCSSCCCC
T ss_pred CCCCCcCCCCccC
Confidence 5999999988654
No 7
>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.20 E-value=34 Score=21.27 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=9.0
Q ss_pred hCCCCCCcccccc
Q 016392 323 FGIDYSKLPLMFR 335 (390)
Q Consensus 323 ~gIN~n~~P~~~r 335 (390)
-||.|.+.| |.|
T Consensus 21 GGvtY~dqp-WHk 32 (35)
T d2cuqa2 21 GGVTYRDQP-WHR 32 (35)
T ss_dssp CCEESSSSE-ECT
T ss_pred CceeecCCc-chh
Confidence 488888887 765
No 8
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.17 E-value=31 Score=26.70 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=9.7
Q ss_pred EEEeCCCccccc
Q 016392 26 VRIHGRDFQRFS 37 (390)
Q Consensus 26 vRlDG~~F~kft 37 (390)
+|+|||++..+=
T Consensus 6 ~R~DGR~~~e~R 17 (145)
T d2nn6b1 6 YRVDGRRAGELR 17 (145)
T ss_dssp BCSSSSCTTSCC
T ss_pred ccCCCCCCCCcc
Confidence 689999988864
No 9
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.67 E-value=31 Score=26.52 Aligned_cols=12 Identities=33% Similarity=0.877 Sum_probs=9.5
Q ss_pred EEEeCCCccccc
Q 016392 26 VRIHGRDFQRFS 37 (390)
Q Consensus 26 vRlDG~~F~kft 37 (390)
+|+|||.+..+=
T Consensus 7 ~R~DGR~~~e~R 18 (144)
T d2ba0d1 7 LRLDGRKFDELR 18 (144)
T ss_dssp CBTTSCCTTCCC
T ss_pred cCCCCCCCCCcc
Confidence 789999888753
No 10
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.65 E-value=31 Score=27.27 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=10.7
Q ss_pred EEEeCCCcccccc
Q 016392 26 VRIHGRDFQRFSH 38 (390)
Q Consensus 26 vRlDG~~F~kft~ 38 (390)
+|.|||.|..+=.
T Consensus 16 iR~DGR~~~e~R~ 28 (181)
T d2nn6c1 16 CRPDGRELGEFRT 28 (181)
T ss_dssp CCTTSCCSCCCCS
T ss_pred CCCCCcCCCCccC
Confidence 8999999988643
Done!