BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016394
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 122/288 (42%), Gaps = 32/288 (11%)
Query: 112 YPLDTIKTKLQTKG---------ASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTA 162
+PLDT K +LQ +G AS Y I +T+G Y+G+ A L +
Sbjct: 20 FPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMS 79
Query: 163 SSAIYFGTCEFGKSFLSKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAK-- 220
+++ G + K F +K + + AG+ ++ A+ P +++ R QA A+
Sbjct: 80 FASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG 139
Query: 221 -GRSWEVLLK----ILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLSRTKNA 275
GR ++ ++ I +GI GL+ G S + RN +++ +K +L A
Sbjct: 140 GGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLL----KA 195
Query: 276 NLKPIESVC---CGALAGAISASITTPLDVVKTRLMTQVHGEAVNKIAAVMYTGVTATVK 332
NL + C AG + I +P+DVVKTR M G+ Y
Sbjct: 196 NLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQ---------YHSAGHCAL 246
Query: 333 QILKEEGWVGLTRGMAPRVVHSACFSAIGYFAFETARLTIMHQYLKKK 380
+L++EG +G P + ++ + + +E + +M Y ++
Sbjct: 247 TMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSRE 294
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 7/156 (4%)
Query: 227 LLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLSRTKNANLKPIESVCCG 286
+L ++ +G LY G A L R + + ++ +K +++A + + G
Sbjct: 54 ILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIG--SRLLAG 111
Query: 287 ALAGAISASITTPLDVVKTRLMTQVHGEAVNKIAAVMYTGVTATVKQILKEEGWVGLTRG 346
+ GA++ ++ P DVVK R Q + Y K I +EEG GL +G
Sbjct: 112 STTGALAVAVAQPTDVVKVRFQAQARAGGGRR-----YQSTVEAYKTIAREEGIRGLWKG 166
Query: 347 MAPRVVHSACFSAIGYFAFETARLTIMHQYLKKKEL 382
+P V +A + ++ + T++ L +L
Sbjct: 167 TSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDL 202
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 111/263 (42%), Gaps = 34/263 (12%)
Query: 113 PLDTIKTKLQTKGASKM------YSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAI 166
P++ +K LQ + ASK Y D + + + +G L F+ G A ++ + A+
Sbjct: 27 PIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL 86
Query: 167 YFGTCE-FGKSFLSKLEIYPSVLI----PPTAGAMGNIVSSAIMVPKELITQRMQA---- 217
F + + + FL ++ + +G S + P + R+ A
Sbjct: 87 NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 146
Query: 218 GAKGRSW----EVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLSRTK 273
GA R + + KI + DG+ GLY G++ ++ + + ++ K +L K
Sbjct: 147 GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKG-MLPDPK 205
Query: 274 NANLKPIESVCCGALAGAISASITTPLDVVKTRLMTQVHGEAVNKIAAVMYTGVTATVKQ 333
N ++ I S A++ ++ P D V+ R+M Q + K A +MYTG ++
Sbjct: 206 NVHI--IVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ----SGRKGADIMYTGTVDCWRK 259
Query: 334 ILKEEG--------WVGLTRGMA 348
I K+EG W + RGM
Sbjct: 260 IAKDEGPKAFFKGAWSNVLRGMG 282
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 20/161 (12%)
Query: 107 TYVC-LYPLDTIKTKLQT---KGAS-KMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGST 161
T +C +YPLD +T+L KGA+ + ++ + I K F++ G+ G Y G + + G
Sbjct: 125 TSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGII 184
Query: 162 ASSAIYFGTCEFGKSFL---SKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQR--MQ 216
A YFG + K L + I S +I T A+ +VS P + + +R MQ
Sbjct: 185 IYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVS----YPFDTVRRRMMMQ 240
Query: 217 AGAKGR------SWEVLLKILEVDGILGLYAGYSATLLRNL 251
+G KG + + KI + +G + G + +LR +
Sbjct: 241 SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGM 281
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 7/148 (4%)
Query: 225 EVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVL---SRTKNANLKPIE 281
+ +++I + G L + G A ++R P L+++ + K L R K
Sbjct: 55 DCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAG 114
Query: 282 SVCCGALAGAISASITTPLDVVKTRLMTQVHGEAVNKIAAVMYTGVTATVKQILKEEGWV 341
++ G AGA S PLD +TRL V A + +TG+ + +I K +G
Sbjct: 115 NLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQR----EFTGLGNCITKIFKSDGLR 170
Query: 342 GLTRGMAPRVVHSACFSAIGYFAFETAR 369
GL +G V + A + ++TA+
Sbjct: 171 GLYQGFNVSVQGIIIYRAAYFGVYDTAK 198
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 277 LKPIESVCCGALAGAISASITTPLDVVKTRLMTQVHGEAVNKIAAVMYTGVTATVKQILK 336
L ++ G +A AIS + P++ VK L+ QV + A Y G+ V +I K
Sbjct: 5 LSFLKDFLAGGVAAAISKTAVAPIERVK--LLLQVQHASKQISAEKQYKGIIDCVVRIPK 62
Query: 337 EEGWVGLTRGMAPRVVH 353
E+G++ RG V+
Sbjct: 63 EQGFLSFWRGNLANVIR 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,794,998
Number of Sequences: 62578
Number of extensions: 352642
Number of successful extensions: 723
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 708
Number of HSP's gapped (non-prelim): 9
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)