Query 016394
Match_columns 390
No_of_seqs 404 out of 2069
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 12:51:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 9.7E-58 3.3E-62 431.4 23.8 277 96-382 4-296 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.9E-55 6.7E-60 414.5 28.2 271 93-371 7-296 (297)
3 1okc_A ADP, ATP carrier protei 100.0 2.8E-34 9.7E-39 270.0 19.5 182 187-372 7-201 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2.1E-34 7.3E-39 271.6 16.6 179 189-374 3-194 (303)
5 3tgu_G UQCRQ, mitochondrial ub 26.9 70 0.0024 22.7 3.8 34 339-372 33-66 (81)
6 1pp9_G Ubiquinol-cytochrome C 15.5 1E+02 0.0035 21.8 2.6 35 338-372 32-66 (81)
7 3plv_C 66 kDa U4/U6.U5 small n 14.0 60 0.0021 16.7 0.8 12 5-16 10-21 (21)
8 3cx5_H Cytochrome B-C1 complex 13.4 2E+02 0.0069 20.9 3.8 37 338-374 42-78 (93)
9 2acm_A Mucin-1; auto-catalytic 13.1 34 0.0012 22.6 -0.4 20 325-344 40-59 (66)
10 1aep_A Apolipophorin III; lipo 10.6 77 0.0026 23.8 0.8 12 5-16 25-36 (161)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=9.7e-58 Score=431.36 Aligned_cols=277 Identities=23% Similarity=0.352 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHHhhhcchHHHhhHhhccCCC---------CCCCccHHHHHHHHHHhcCcccccccchHHHHhHHhhhhH
Q 016394 96 GAAAGGIAGAFTYVCLYPLDTIKTKLQTKGA---------SKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAI 166 (390)
Q Consensus 96 ~~~aG~~ag~~~~~~~~Pld~vK~r~Q~~~~---------~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 166 (390)
.+++|++||+++.+++||||+||+|+|++.. ...|.+.++++++|+++||++|||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999864 2368999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhccCCCCcchHhHHHHHHHHHHhhhhccHHHHHHHHhcCC-------CCChHHHHHHHHHHhcHhhc
Q 016394 167 YFGTCEFGKSFLSKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGA-------KGRSWEVLLKILEVDGILGL 239 (390)
Q Consensus 167 ~f~~ye~~k~~l~~~~~~~~~~~~~~aG~~ag~~~~~v~~Pld~iktr~q~~~-------~~~~~~~~~~i~~~~G~~gl 239 (390)
+|++||.+|+.+.+.....+....+++|++||+++.++++|+|++|+|+|++. +.+.++++++|+++||++||
T Consensus 84 ~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~gl 163 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGL 163 (303)
T ss_dssp TTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhh
Confidence 99999999998865422355677899999999999999999999999999864 35789999999999999999
Q ss_pred ccchHHHHHhHhcchhHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHhcccCcccchhh
Q 016394 240 YAGYSATLLRNLPAGVLSYSSFEYLKAAVLSRTKNANLKPIESVCCGALAGAISASITTPLDVVKTRLMTQVHGEAVNKI 319 (390)
Q Consensus 240 yrG~~~~l~r~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~PldviktR~q~~~~~~~~~~~ 319 (390)
|||+.++++|.+|+++++|.+||.+|+.+.+... ...+....+++|++||++++++++|+|+||+|||.+...
T Consensus 164 yrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~------ 236 (303)
T 2lck_A 164 WKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALG------ 236 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS------
T ss_pred hCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccc------
Confidence 9999999999999999999999999998764332 244567889999999999999999999999999998542
Q ss_pred hhhccCcHHHHHHHHHHhhChhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016394 320 AAVMYTGVTATVKQILKEEGWVGLTRGMAPRVVHSACFSAIGYFAFETARLTIMHQYLKKKEL 382 (390)
Q Consensus 320 ~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~llr~~p~~~i~~~~ye~~k~~~~~~~~~~~~~ 382 (390)
.|.++++|+++|+++||++|||||+.|+++|.+|.++++|.+||.+|+.+.+.+..+.+.
T Consensus 237 ---~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~~~~~~ 296 (303)
T 2lck_A 237 ---QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAP 296 (303)
T ss_dssp ---SCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHCC
T ss_pred ---ccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 289999999999999999999999999999999999999999999998776555444333
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.9e-55 Score=414.49 Aligned_cols=271 Identities=21% Similarity=0.317 Sum_probs=235.4
Q ss_pred HHHHHHHHHHHHHHHhhhcchHHHhhHhhccCCC------CCCCccHHHHHHHHHHhcCcccccccchHHHHhHHhhhhH
Q 016394 93 ALIGAAAGGIAGAFTYVCLYPLDTIKTKLQTKGA------SKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAI 166 (390)
Q Consensus 93 ~~~~~~aG~~ag~~~~~~~~Pld~vK~r~Q~~~~------~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 166 (390)
.+..+++|++||+++.++++|||+||+|+|++.. ...|++.++++++|+++||++|||||+.+++++.++..++
T Consensus 7 ~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 86 (297)
T 1okc_A 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL 86 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHH
Confidence 4667899999999999999999999999999853 2358899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhh-hhccCCC----CcchHhHHHHHHHHHHhhhhccHHHHHHHHhcCC--------CCChHHHHHHHHHH
Q 016394 167 YFGTCEFGKSFL-SKLEIYP----SVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGA--------KGRSWEVLLKILEV 233 (390)
Q Consensus 167 ~f~~ye~~k~~l-~~~~~~~----~~~~~~~aG~~ag~~~~~v~~Pld~iktr~q~~~--------~~~~~~~~~~i~~~ 233 (390)
+|++||.+|+.+ ...+... .....+++|++||++++++++|+|+||+|+|++. +.+.++++++|+++
T Consensus 87 ~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~ 166 (297)
T 1okc_A 87 NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKS 166 (297)
T ss_dssp HHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHh
Confidence 999999999954 3322211 2356789999999999999999999999999863 35788999999999
Q ss_pred hcHhhcccchHHHHHhHhcchhHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHhcccCc
Q 016394 234 DGILGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLSRTKNANLKPIESVCCGALAGAISASITTPLDVVKTRLMTQVHG 313 (390)
Q Consensus 234 ~G~~glyrG~~~~l~r~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~PldviktR~q~~~~~ 313 (390)
||++|||||+.++++|.+|+++++|.+||.+|+.+.+. ...+....+++|++||++++++++|+||||+|||++...
T Consensus 167 eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~---~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~ 243 (297)
T 1okc_A 167 DGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP---KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGR 243 (297)
T ss_dssp HCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred ccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999976432 234567889999999999999999999999999998543
Q ss_pred ccchhhhhhccCcHHHHHHHHHHhhChhhcccChHHHhHHHHHHHHHHHHHHHHHHHH
Q 016394 314 EAVNKIAAVMYTGVTATVKQILKEEGWVGLTRGMAPRVVHSACFSAIGYFAFETARLT 371 (390)
Q Consensus 314 ~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~llr~~p~~~i~~~~ye~~k~~ 371 (390)
.. ....|+++++|+++|+++||++|||||+.|+++|. +.++++|.+||.+|+.
T Consensus 244 ~~----~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 244 KG----ADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp CG----GGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred CC----CCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 21 12359999999999999999999999999999996 5789999999998875
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.8e-34 Score=269.98 Aligned_cols=182 Identities=24% Similarity=0.341 Sum_probs=158.4
Q ss_pred cchHhHHHHHHHHHHhhhhccHHHHHHHHhcCC----------CCChHHHHHHHHHHhcHhhcccchHHHHHhHhcchhH
Q 016394 187 VLIPPTAGAMGNIVSSAIMVPKELITQRMQAGA----------KGRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVL 256 (390)
Q Consensus 187 ~~~~~~aG~~ag~~~~~v~~Pld~iktr~q~~~----------~~~~~~~~~~i~~~~G~~glyrG~~~~l~r~~~~~~i 256 (390)
.+..+++|++||+++.++++|+|++|+|+|++. +.+.++++++|+++||++|||||+.+++++.+|.+++
T Consensus 7 ~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 86 (297)
T 1okc_A 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL 86 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHH
Confidence 456789999999999999999999999999863 4578899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCC---CChHHHHHHHHHHHHHHHHhhccHHHHHHHHhcccCcccchhhhhhccCcHHHHHHH
Q 016394 257 SYSSFEYLKAAVLSRTKNAN---LKPIESVCCGALAGAISASITTPLDVVKTRLMTQVHGEAVNKIAAVMYTGVTATVKQ 333 (390)
Q Consensus 257 ~f~~ye~~k~~~~~~~~~~~---~~~~~~~~~g~~ag~~a~~~t~PldviktR~q~~~~~~~~~~~~~~~y~~~~~~~~~ 333 (390)
+|.+||.+|+.+.+...... ......+++|++||++++++++|+|+||+|||++..... ....|.++++++++
T Consensus 87 ~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~----~~~~~~~~~~~~~~ 162 (297)
T 1okc_A 87 NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGA----AQREFTGLGNCITK 162 (297)
T ss_dssp HHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSST----TTCSCSSHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCC----cCcCCCCHHHHHHH
Confidence 99999999996543322211 123567899999999999999999999999999853211 12248999999999
Q ss_pred HHHhhChhhcccChHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016394 334 ILKEEGWVGLTRGMAPRVVHSACFSAIGYFAFETARLTI 372 (390)
Q Consensus 334 i~~~eG~~glyrG~~~~llr~~p~~~i~~~~ye~~k~~~ 372 (390)
|+++||++|||||+.++++|.+|.+++.|.+||.+|+.+
T Consensus 163 i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~ 201 (297)
T 1okc_A 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML 201 (297)
T ss_dssp HHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998854
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.1e-34 Score=271.57 Aligned_cols=179 Identities=20% Similarity=0.333 Sum_probs=160.5
Q ss_pred hHhHHHHHHHHHHhhhhccHHHHHHHHhcCC-------------CCChHHHHHHHHHHhcHhhcccchHHHHHhHhcchh
Q 016394 189 IPPTAGAMGNIVSSAIMVPKELITQRMQAGA-------------KGRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGV 255 (390)
Q Consensus 189 ~~~~aG~~ag~~~~~v~~Pld~iktr~q~~~-------------~~~~~~~~~~i~~~~G~~glyrG~~~~l~r~~~~~~ 255 (390)
..+++|++||+++.++++|+|++|+|+|++. +.+.++++++|+++||+++||||+.+++++.+|+.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999863 346789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHhcccCcccchhhhhhccCcHHHHHHHHH
Q 016394 256 LSYSSFEYLKAAVLSRTKNANLKPIESVCCGALAGAISASITTPLDVVKTRLMTQVHGEAVNKIAAVMYTGVTATVKQIL 335 (390)
Q Consensus 256 i~f~~ye~~k~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~PldviktR~q~~~~~~~~~~~~~~~y~~~~~~~~~i~ 335 (390)
++|.+||.+|+.+.+... ..+.+..+++|++||++++++++|+|+||+|||++..... ...|.++++++++|+
T Consensus 83 i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~-----~~~~~~~~~~~~~i~ 155 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGG-----GRRYQSTVEAYKTIA 155 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCC-----SSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCC-----CCCCCCHHHHHHHHH
Confidence 999999999998864322 3567889999999999999999999999999999864321 124899999999999
Q ss_pred HhhChhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016394 336 KEEGWVGLTRGMAPRVVHSACFSAIGYFAFETARLTIMH 374 (390)
Q Consensus 336 ~~eG~~glyrG~~~~llr~~p~~~i~~~~ye~~k~~~~~ 374 (390)
++||++|||||+.++++|.+|..++.|.+||.+|+.+.+
T Consensus 156 ~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~ 194 (303)
T 2lck_A 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK 194 (303)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999886643
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=26.89 E-value=70 Score=22.72 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=26.8
Q ss_pred ChhhcccChHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016394 339 GWVGLTRGMAPRVVHSACFSAIGYFAFETARLTI 372 (390)
Q Consensus 339 G~~glyrG~~~~llr~~p~~~i~~~~ye~~k~~~ 372 (390)
|+...+|-+.-+++.++|-.++.+.+|+..++.-
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 4555566666788899999999999999987743
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=15.46 E-value=1e+02 Score=21.85 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=27.4
Q ss_pred hChhhcccChHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016394 338 EGWVGLTRGMAPRVVHSACFSAIGYFAFETARLTI 372 (390)
Q Consensus 338 eG~~glyrG~~~~llr~~p~~~i~~~~ye~~k~~~ 372 (390)
.|+...+|-+.-+++..+|-.++.+.+|+..++..
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 34555666677788889999999999999987743
No 7
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=14.01 E-value=60 Score=16.69 Aligned_cols=12 Identities=58% Similarity=0.683 Sum_probs=8.6
Q ss_pred cccccCCCCCCC.....
Q 016394 5 LSASLGLPSPDP..... 16 (390)
Q Consensus 5 ~~~~~~~~~~~~..... 16 (390)
+=.+|||.++.+
T Consensus 10 ~r~~lGLkplp~..... 21 (21)
T 3plv_C 10 LRASLGLKLIPPxxxxx 26 (26)
T ss_dssp HHHHTTCCCCCC.....
T ss_pred HHHHcCCCCCCC.....
Confidence 346899988754
No 8
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=13.39 E-value=2e+02 Score=20.91 Aligned_cols=37 Identities=5% Similarity=-0.015 Sum_probs=30.0
Q ss_pred hChhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016394 338 EGWVGLTRGMAPRVVHSACFSAIGYFAFETARLTIMH 374 (390)
Q Consensus 338 eG~~glyrG~~~~llr~~p~~~i~~~~ye~~k~~~~~ 374 (390)
.|+...+|-+.-+++..+|-.++.+.+|+..++....
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~ 78 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEF 78 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHH
Confidence 4666777778888889999999999999998884433
No 9
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=13.12 E-value=34 Score=22.61 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=17.3
Q ss_pred CcHHHHHHHHHHhhChhhcc
Q 016394 325 TGVTATVKQILKEEGWVGLT 344 (390)
Q Consensus 325 ~~~~~~~~~i~~~eG~~gly 344 (390)
+++.+.+.+||+++|+.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56788899999999999886
No 10
>1aep_A Apolipophorin III; lipoprotein; 2.70A {Locusta migratoria} SCOP: a.63.1.1
Probab=10.62 E-value=77 Score=23.84 Aligned_cols=12 Identities=58% Similarity=1.132 Sum_probs=9.2
Q ss_pred cccccCCCCCCC
Q 016394 5 LSASLGLPSPDP 16 (390)
Q Consensus 5 ~~~~~~~~~~~~ 16 (390)
+-..||||.||+
T Consensus 25 i~eTLGLPtpde 36 (161)
T 1aep_A 25 LHETLGLPTPDE 36 (161)
T ss_dssp HGGGGGSSCTTH
T ss_pred HHHHcCCCCcHH
Confidence 346789999886
Done!