Query 016396
Match_columns 390
No_of_seqs 308 out of 1548
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 12:53:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h38_A TRNA nucleotidyl transf 100.0 9.5E-57 3.3E-61 459.6 25.1 235 70-327 13-251 (441)
2 1vfg_A A-adding enzyme, poly A 100.0 2.7E-56 9.4E-61 450.6 24.4 223 83-328 2-227 (390)
3 1ou5_A TRNA CCA-adding enzyme, 100.0 1E-55 3.5E-60 453.4 19.6 262 72-379 55-321 (448)
4 1miw_A TRNA CCA-adding enzyme; 100.0 2.1E-55 7.2E-60 446.1 20.2 218 81-327 9-228 (404)
5 3aql_A Poly(A) polymerase; tra 100.0 6.5E-56 2.2E-60 451.0 13.7 275 70-379 15-303 (415)
6 2la3_A Uncharacterized protein 96.4 0.04 1.4E-06 49.9 12.4 129 81-248 22-164 (191)
7 4e8j_A Lincosamide resistance 93.5 0.11 3.8E-06 45.8 5.8 53 81-139 12-67 (161)
8 2fcl_A Hypothetical protein TM 91.7 0.51 1.8E-05 41.6 7.9 60 73-139 15-76 (169)
9 3nyb_A Poly(A) RNA polymerase 90.6 2.4 8.3E-05 40.9 12.2 98 68-174 30-137 (323)
10 4e8f_A Poly(A) RNA polymerase 76.0 13 0.00043 37.1 10.0 97 68-175 53-163 (405)
11 2ikf_A RNA uridylyl transferas 67.1 30 0.001 33.4 10.3 46 74-121 47-93 (353)
12 1q79_A Poly(A) polymerase alph 66.6 31 0.001 35.5 10.6 77 92-177 93-172 (514)
13 1no5_A Hypothetical protein HI 64.4 12 0.00043 29.9 5.9 48 70-122 7-54 (114)
14 2hhp_A Poly(A) polymerase; tem 59.6 42 0.0014 34.6 10.1 77 93-178 81-160 (530)
15 1jms_A Terminal deoxynucleotid 56.4 22 0.00076 35.0 7.1 60 75-138 178-243 (381)
16 1ylq_A Putative nucleotidyltra 55.5 19 0.00064 28.0 5.3 40 80-121 4-44 (96)
17 3pq1_A Poly(A) RNA polymerase; 52.7 1E+02 0.0035 31.2 11.4 51 68-120 143-197 (464)
18 2ihm_A POL MU, DNA polymerase 51.1 23 0.00077 34.7 6.1 65 69-138 153-221 (360)
19 2bcq_A DNA polymerase lambda; 48.7 28 0.00095 33.7 6.3 52 68-124 145-197 (335)
20 2fmp_A DNA polymerase beta; nu 46.1 38 0.0013 32.7 6.8 50 68-122 148-198 (335)
21 1wot_A Putative minimal nucleo 40.5 33 0.0011 26.6 4.5 42 77-121 10-51 (98)
22 2rff_A Putative nucleotidyltra 37.2 55 0.0019 26.2 5.4 27 94-122 34-60 (111)
23 3djb_A Hydrolase, HD family; a 36.3 15 0.00052 33.4 2.1 38 341-380 28-65 (223)
24 2ba3_A NIKA; dimer, bacterial 36.1 23 0.00077 24.2 2.5 34 68-109 18-51 (51)
25 3gw7_A Uncharacterized protein 35.7 28 0.00095 32.0 3.8 37 340-378 27-63 (239)
26 2qgs_A Protein Se1688; alpha-h 34.4 20 0.00069 32.3 2.6 18 362-379 48-65 (225)
27 3dto_A BH2835 protein; all alp 33.3 15 0.00053 33.4 1.6 19 362-380 47-65 (223)
28 3b0x_A DNA polymerase beta fam 33.3 61 0.0021 33.5 6.3 119 69-210 157-284 (575)
29 4fh3_A Poly(A) RNA polymerase 32.2 61 0.0021 30.8 5.8 52 68-121 25-80 (349)
30 3b57_A LIN1889 protein; Q92AN1 31.0 16 0.00055 32.5 1.3 19 362-380 47-65 (209)
31 3irh_A HD domain protein; phos 28.6 19 0.00063 36.9 1.4 18 363-380 124-141 (480)
32 2ibn_A Inositol oxygenase; red 26.1 26 0.00089 32.6 1.8 34 343-380 61-95 (250)
33 2pbe_A AAD6, aminoglycoside 6- 25.8 1.3E+02 0.0044 28.3 6.7 52 75-127 5-57 (294)
34 2o08_A BH1327 protein; putativ 25.6 23 0.0008 30.7 1.4 15 365-379 43-57 (188)
35 2pjq_A Uncharacterized protein 25.4 16 0.00056 33.1 0.3 19 362-380 52-70 (231)
36 3ccg_A HD superfamily hydrolas 24.6 25 0.00086 30.6 1.4 16 365-380 44-59 (190)
37 2ogi_A Hypothetical protein SA 24.0 26 0.00089 30.7 1.4 16 365-380 51-66 (196)
38 1r89_A TRNA nucleotidyltransfe 23.5 2E+02 0.0067 28.9 7.8 96 68-176 12-114 (437)
39 3kq5_A Hypothetical cytosolic 21.2 20 0.0007 35.6 0.0 17 363-379 103-119 (393)
40 2b4v_A RNA editing complex pro 20.6 1.3E+02 0.0044 30.4 5.9 42 78-122 43-86 (468)
41 2hek_A Hypothetical protein; p 20.4 40 0.0014 33.1 1.9 16 364-379 75-90 (371)
No 1
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=100.00 E-value=9.5e-57 Score=459.62 Aligned_cols=235 Identities=30% Similarity=0.489 Sum_probs=207.3
Q ss_pred eecChhhHHHHHHHHHHHHhcCCCceEEEEcchhhhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCcCCCceEEe
Q 016396 70 IELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVI 149 (390)
Q Consensus 70 i~l~~~e~~i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi 149 (390)
..|++....+++.+.+.+++.| +++|+|||||||+|||++++|+||+|++. +.++++.+.+.+ +..++
T Consensus 13 ~~lp~~~~~~l~~l~~~~~~~G--~~aylVGG~VRD~LLg~~~~D~Di~t~~~-~~~~~~~~~~~~---------~~~~~ 80 (441)
T 3h38_A 13 ERVDPKILNLFRLLGKFGDEVN--MPVYVVGGFVRDLLLGIKNLDIDIVVEGN-ALEFAEYAKRFL---------PGKLV 80 (441)
T ss_dssp HHSCHHHHHHHHHHHHHHHHTT--CCEEEETHHHHHHHHTCCCCCEEEEESSC-HHHHHHHHHTTS---------CEEEE
T ss_pred HhCCHHHHHHHHHHHHHHHHcC--CeEEEEcHHHHHHHCCCCCCCeeEEeCCC-HHHHHHHHHHHc---------CCEec
Confidence 3588999999999988888775 78999999999999999999999999985 667766554432 11222
Q ss_pred cCCCCCCceeeEEEEEE-cCEEEEeeecccccccCCCCCcccccCCHHHHHhcCCCCccceeeecC---CCceecCcccc
Q 016396 150 PSNPDQSKHLETATMKL-YDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNIN---TSSVEDLTGRG 225 (390)
Q Consensus 150 ~~n~~~~~~~~t~~~~~-~~~~iD~~~~R~e~y~~~~r~P~v~~gti~eDl~RRDFTINAla~~l~---~~~i~D~~g~G 225 (390)
. +++|+|+++.+ +|..+||+++|+|.|..+|++|.|+++|+++||.|||||||||||+++ .|.++||+| |
T Consensus 81 ~-----g~~~gt~~v~~~~g~~~ev~t~R~e~~~~~~~~p~V~~~~l~eDl~RRDFTINAla~~~~~~~~g~liD~~g-G 154 (441)
T 3h38_A 81 K-----HDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPKDFGLLIDFFG-G 154 (441)
T ss_dssp C-----CSSTTEEEEEETTSCEEEEEECCEECCSSSSSCCEESCCCHHHHHHTSSBGGGSCEEECSGGGTTEEECSSS-H
T ss_pred c-----CCcCcEEEEEEeCCeEEEEecccccccCCCCCCCccCCCCHHHHHHhccchhhhhhcccCCCCCCeEeCCCC-C
Confidence 1 35679999999 789999999999999999999999999999999999999999999987 378999998 9
Q ss_pred HHHhhCCCeecCCCCCcccccChhhHHHHHHHHhhcCCCCcHHHHHHhhcHHHHHHHhccCCHHHHHHHHHHHhcCCCHH
Q 016396 226 IADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPV 305 (390)
Q Consensus 226 ~~DL~~~~IR~v~~p~~~F~eDPlRILRa~Rfaarlgf~Id~~T~~ai~~~~~~~~Ll~~vs~ERI~~El~kiL~~~~~~ 305 (390)
++||++|+||++++ .+|.|||+||||++|||++|||+|+++|..+|++. ....++.++|+|||+.|+.|||.+++|.
T Consensus 155 ~~DL~~~~iR~v~~--~~F~eDplRiLRa~Rfaa~lgf~i~~~t~~~i~~~-~~~~~l~~is~eRi~~El~kll~~~~~~ 231 (441)
T 3h38_A 155 YRDLKEGVIRVLHT--LSFVDDPTRILRAIRFEQRFDFRIEETTERLLKQA-VEEGYLERTTGPRLRQELEKILEEKNPL 231 (441)
T ss_dssp HHHHHTTEECBSST--THHHHCTTHHHHHHHHHHHTTCEECHHHHHHHHHH-HHTTHHHHSCHHHHHHHHHHHHTSSCHH
T ss_pred HHHHhCCEEEECCC--CChhhCHHHHHHHHHHHHHhCCCCChHHHHHHHHH-HhhchhccCCHHHHHHHHHHHHcCCCHH
Confidence 99999999999975 58999999999999999999999999999999864 2234667899999999999999999999
Q ss_pred HHHHHHHHcCcchHHhcCCCCC
Q 016396 306 KAMTHICGLTLFWIVFKLPLQV 327 (390)
Q Consensus 306 ~~L~lL~~~glL~~if~~Pe~~ 327 (390)
.++++|+++|+|..+| |++.
T Consensus 232 ~~l~~l~~~glL~~i~--Pel~ 251 (441)
T 3h38_A 232 KSIRRMAQFDVIKHLF--PKTY 251 (441)
T ss_dssp HHHHHHHHTTHHHHHS--TTCC
T ss_pred HHHHHHHHcCChHHhC--cccc
Confidence 9999999999999999 9964
No 2
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=2.7e-56 Score=450.65 Aligned_cols=223 Identities=27% Similarity=0.412 Sum_probs=188.8
Q ss_pred HHHHHHhcCCCceEEEEcchhhhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCcCCCceEEecCCCCCCceeeEE
Q 016396 83 LLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETA 162 (390)
Q Consensus 83 l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi~~n~~~~~~~~t~ 162 (390)
+.+++++. |+++|+|||||||+|||++++|+||+|++. +.+|++.+.+.+.. .+.+ +++|+|+
T Consensus 2 ~~~~~~~~--g~~~y~VGG~VRD~llg~~~~D~Di~~~~~-~~~~~~~~~~~~~~-------~~~~-------~~~~~t~ 64 (390)
T 1vfg_A 2 VGQIAKEM--GLRAYIVGGVVRDILLGKEVWDVDFVVEGN-AIELAKELARRHGV-------NVHP-------FPEFGTA 64 (390)
T ss_dssp HHHHHHHT--TCCEEEETHHHHHHHTTCCCSEEEEEESSC-HHHHHHHHHHHHTC-------CCEE-------ETTTTEE
T ss_pred hHHHHHHc--CCeEEEEChHHHHHHcCCCCCCEEEEEeCC-hHHHHHHHHHHcCC-------ceee-------cCCCcEE
Confidence 34566666 478999999999999999999999999984 78888888887621 1111 2457999
Q ss_pred EEEEcCEEEEeeecccccccCCCCCcccccCCHHHHHhcCCCCccceeeecCC---CceecCccccHHHhhCCCeecCCC
Q 016396 163 TMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINT---SSVEDLTGRGIADLKHGKIVTPLP 239 (390)
Q Consensus 163 ~~~~~~~~iD~~~~R~e~y~~~~r~P~v~~gti~eDl~RRDFTINAla~~l~~---~~i~D~~g~G~~DL~~~~IR~v~~ 239 (390)
++.++|..+||+++|+|.|+.+|++|+|+++|+++||.|||||||||||++++ |.++||+| |++||++|+||++++
T Consensus 65 ~v~~~~~~~e~~~~R~e~~~~~~~~p~v~~~~l~~Dl~RRDfTiNAla~~~~~~~~g~l~D~~~-G~~DL~~~~ir~v~~ 143 (390)
T 1vfg_A 65 HLKIGKLKLEFATARRETYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNLEDYGTLIDYFG-GLRDLKDKVIRVLHP 143 (390)
T ss_dssp EEEETTEEEEEEECCSCC---------CCCCCHHHHHHTSSBGGGSCEEECCGGGTTCEECSSC-HHHHHHTTEECBSST
T ss_pred EEEECCEEEEEeccCcccCCCCCCCCccCCCCHHHHHhhCCCchhheeecccCCCCCeEEeCCC-CHHHHhCCeeEeCCc
Confidence 99999999999999999999999999999999999999999999999999874 78999998 999999999999964
Q ss_pred CCcccccChhhHHHHHHHHhhcCCCCcHHHHHHhhcHHHHHHHhccCCHHHHHHHHHHHhcCCCHHHHHHHHHHcCcchH
Q 016396 240 PKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWI 319 (390)
Q Consensus 240 p~~~F~eDPlRILRa~Rfaarlgf~Id~~T~~ai~~~~~~~~Ll~~vs~ERI~~El~kiL~~~~~~~~L~lL~~~glL~~ 319 (390)
.+|.|||+||||++|||+++||.|+++|+++|++. ....++..+|.||++.|+.|||.++++..+++.|+++|+|..
T Consensus 144 --~~F~eDPlRiLRa~Rfaa~~gf~i~~~T~~~i~~~-~~~~~l~~~s~eRi~~El~kiL~~~~~~~~l~~l~~~glL~~ 220 (390)
T 1vfg_A 144 --VSFIEDPVRILRALRFAGRLNFKLSRSTEKLLKQA-VNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEE 220 (390)
T ss_dssp --THHHHCTTHHHHHHHHHHHHTCEECHHHHHHHHHH-HHTTGGGTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTCHHH
T ss_pred --cchhhCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhhhhhhccCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHH
Confidence 69999999999999999999999999999999864 222367789999999999999999999999999999999999
Q ss_pred HhcCCCCCC
Q 016396 320 VFKLPLQVE 328 (390)
Q Consensus 320 if~~Pe~~~ 328 (390)
+| |++..
T Consensus 221 ~l--Pe~~~ 227 (390)
T 1vfg_A 221 II--EGFQW 227 (390)
T ss_dssp HS--TTCCC
T ss_pred Hh--Hhhhh
Confidence 99 99643
No 3
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=1e-55 Score=453.41 Aligned_cols=262 Identities=28% Similarity=0.346 Sum_probs=201.4
Q ss_pred cChhhHHHHHHHHHHHHhcCCCceEEEEcchhhhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCcCCCceEEecC
Q 016396 72 LTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPS 151 (390)
Q Consensus 72 l~~~e~~i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi~~ 151 (390)
+++.-.. |.+.+++. |+++|+|||||||+|||++++|+||+|++. +++ +.+.|...| +.++
T Consensus 55 ~~~~~~~----i~~~l~~~--g~~~ylVGG~VRD~LLg~~~~D~Di~~~~~-p~~----~~~~~~~~g------~~~~-- 115 (448)
T 1ou5_A 55 FTEGLKS----LTELFVKE--NHELRIAGGAVRDLLNGVKPQDIDFATTAT-PTQ----MKEMFQSAG------IRMI-- 115 (448)
T ss_dssp SCTTHHH----HHHHHHHT--TCCEEEESTTTHHHHHTSCCSSCEEEESSC-HHH----HHHHHTTTT------CCBC--
T ss_pred HHHHHHH----HHHHHHhc--CCeEEEeCHHHHHHHcCCCCCCEEEEeCCC-HHH----HHHHHHHcC------Cccc--
Confidence 4554444 45555555 578999999999999999999999999874 544 555554332 2222
Q ss_pred CCCCCceeeEEEEEEcCEEEEeeecccccccCCCCCcccccC-CHHHHHhcCCCCccceeeecCCCceecCccccHHHhh
Q 016396 152 NPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFG-TAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLK 230 (390)
Q Consensus 152 n~~~~~~~~t~~~~~~~~~iD~~~~R~e~y~~~~r~P~v~~g-ti~eDl~RRDFTINAla~~l~~~~i~D~~g~G~~DL~ 230 (390)
|..++.++|+++.++|..+||+++|+|.|+ +||+|+|+|+ ++++||.||||||||||||+ +|.++||+| |++||+
T Consensus 116 -~~~g~~~gt~~v~~~~~~~ev~t~R~~~~~-~~r~~~v~~~~~l~eDl~RRDFTINAla~~~-~g~l~D~~g-G~~DL~ 191 (448)
T 1ou5_A 116 -NNRGEKHGTITARLHEENFEITTLRIDVTT-DGRHAEVEFTTDWQKDAERRDLTINSMFLGF-DGTLFDYFN-GYEDLK 191 (448)
T ss_dssp -CCCCTTCCCEEECTTTTCEEEEECCS-------------SSCCSSCCGGGSSBGGGSCEECS-SCBEECSSS-HHHHTT
T ss_pred -cCcCcccceEEEEECCEEEEEEeecccccc-cCCCCccccCccHHHHHHHcCCChhheeECC-CCCEeCCCC-CHHHHh
Confidence 211345699999999999999999999885 8999999997 79999999999999999999 789999998 999999
Q ss_pred CCCeecCCCCCcccccChhhHHHHHHHHhhc--CC-CCcHHHHHHhhcHHHHHHHhccCCHHHHHHHHHHHhcCCCHHHH
Q 016396 231 HGKIVTPLPPKATFLDDPLRVLRAIRFGARF--DF-ILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKA 307 (390)
Q Consensus 231 ~~~IR~v~~p~~~F~eDPlRILRa~Rfaarl--gf-~Id~~T~~ai~~~~~~~~Ll~~vs~ERI~~El~kiL~~~~~~~~ 307 (390)
+|+||++++|.++|.|||+||||++|||++| || .|+++|+++|++. ...+..+|.|||+.||.|||.++++..+
T Consensus 192 ~~~IR~v~d~~~rF~EDPLRiLRa~RFaarl~~gf~~I~~~T~~ai~~~---~~~L~~is~ERi~~El~kiL~~~~~~~~ 268 (448)
T 1ou5_A 192 NKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAEN---AKGLAGISGERIWVELKKILVGNHVNHL 268 (448)
T ss_dssp TTCCCBSSTTTTTSSSCTTHHHHHHHHHHHSCSSSSCCCHHHHHHHHHS---CTTGGGSCSHHHHHHHHHHHTSTTHHHH
T ss_pred CCeEEecCChHHhhhhCHHHHHHHHHHHHHcCcCCCCcCHHHHHHHHHH---HHHHhhCCHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999999999999 96 9999999999865 3456789999999999999999999999
Q ss_pred HHHHHHcCcchHH-hcCCCCCCcchhhhhhhcccchHHHHHHHHHHhcCCCCCcccchhHHHHhhhccccCce
Q 016396 308 MTHICGLTLFWIV-FKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTT 379 (390)
Q Consensus 308 L~lL~~~glL~~i-f~~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~llAaLlhp~gk~~ 379 (390)
++.|+++|+|..+ | |++.... .+.+++.... .. ....+..|||||||+++..
T Consensus 269 l~~L~~~GlL~~i~l--Pe~~~i~--------------~~~~~l~~~~--~~--~~~~~l~lAaLlhDi~ka~ 321 (448)
T 1ou5_A 269 IHLIYDLDVAPYIGL--PANASLE--------------EFDKVSKNVD--GF--SPKPVTLLASLFKVQDDVT 321 (448)
T ss_dssp HHHHHHTTCGGGGTC--CCCSCCH--------------HHHHHHHHHT--TS--CCCHHHHHGGGCCSTTTTH
T ss_pred HHHHHHCCCceEecC--cchhhHH--------------HHHHHHHHHH--hc--CCCHHHHHHHHhcChHHHH
Confidence 9999999999999 8 9864321 1123333222 11 1234556899999998753
No 4
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=100.00 E-value=2.1e-55 Score=446.06 Aligned_cols=218 Identities=26% Similarity=0.361 Sum_probs=184.6
Q ss_pred HHHHHHHHhcCCCceEEEEcchhhhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCcCCCceEEecCCCCCCceee
Q 016396 81 SCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLE 160 (390)
Q Consensus 81 ~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi~~n~~~~~~~~ 160 (390)
..+.+.+++. |+++|+|||||||+|||++++|+||+|++. ++ ++.+.+. +.+.+ ++.|+
T Consensus 9 ~~i~~~l~~~--g~~~y~VGG~VRD~lLg~~~~D~Di~~~~~-~~----~~~~~~~-------~~~~~-------g~~~g 67 (404)
T 1miw_A 9 LGIIQQLKQH--GYDAYFVGGAVRDLLLGRPIGDVDIATSAL-PE----DVMAIFP-------KTIDV-------GSKHG 67 (404)
T ss_dssp HHHHHHHHHT--TCCEEEESHHHHHHHHTCCCCCCEEEESSC-HH----HHHHHCS-------SEEEE-------EGGGT
T ss_pred HHHHHHHHhC--CCeEEEECHHHHHHHcCCCCCCEEEEeCCC-HH----HHHHHhh-------hhccc-------CcCCC
Confidence 3455666666 478999999999999999999999999875 44 4445442 11111 24579
Q ss_pred EEEEEEcCEEEEeeecccccccCCCCCc-cccc-CCHHHHHhcCCCCccceeeecCCCceecCccccHHHhhCCCeecCC
Q 016396 161 TATMKLYDLWIDFVNLRCEDYSENSRIP-TMRF-GTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPL 238 (390)
Q Consensus 161 t~~~~~~~~~iD~~~~R~e~y~~~~r~P-~v~~-gti~eDl~RRDFTINAla~~l~~~~i~D~~g~G~~DL~~~~IR~v~ 238 (390)
|+++..+|..+||+++|+|.|+.++|+| .|+| +|+++||.||||||||||||+ +|.++||+| |++||++|+||+++
T Consensus 68 t~~v~~~~~~~ev~t~R~e~~~~~~~~p~~v~~~~~l~~Dl~RRDfTiNAla~~~-~g~l~D~~~-G~~Dl~~~~ir~~~ 145 (404)
T 1miw_A 68 TVVVVHKGKAYEVTTFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAIAMDE-YGTIIDPFG-GREAIRRRIIRTVG 145 (404)
T ss_dssp EEEEEETTEEEEEEECEECC---------CCEECSCHHHHHHTSSBSGGGCEECT-TCCEECTTC-HHHHHHHTEECBSS
T ss_pred eEEEEECCeEEEEeeecccCCCCCCcCCcccccCCcHHHHHHhCCCCcchheeCC-CCCEeCCCC-CHHHHhCCeeeecC
Confidence 9999999999999999999999999999 5888 699999999999999999998 788999998 99999999999999
Q ss_pred CCCcccccChhhHHHHHHHHhhcCCCCcHHHHHHhhcHHHHHHHhccCCHHHHHHHHHHHhcCCCHHHHHHHHHHcCcch
Q 016396 239 PPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFW 318 (390)
Q Consensus 239 ~p~~~F~eDPlRILRa~Rfaarlgf~Id~~T~~ai~~~~~~~~Ll~~vs~ERI~~El~kiL~~~~~~~~L~lL~~~glL~ 318 (390)
+|.++|.|||+||||++|||+++||.|+++|+++|+.. ..++..+|.|||+.||.|||.++++..+++.|+++|+|.
T Consensus 146 ~p~~~f~eDPlRiLRa~Rfaa~lgf~i~~~T~~ai~~~---~~~l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll~ 222 (404)
T 1miw_A 146 EAEKRFREDALRMMRAVRFVSELGFALAPDTEQAIVQN---APLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNA 222 (404)
T ss_dssp CHHHHHHHCTHHHHHHHHHHHHHCCEECHHHHHHHHHH---GGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTT
T ss_pred ChHhhHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HhhhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcchh
Confidence 98899999999999999999999999999999999864 456788999999999999999999999999999999999
Q ss_pred HHhcCCCCC
Q 016396 319 IVFKLPLQV 327 (390)
Q Consensus 319 ~if~~Pe~~ 327 (390)
. + |++.
T Consensus 223 ~-l--Pe~~ 228 (404)
T 1miw_A 223 Y-L--PGLA 228 (404)
T ss_dssp S-S--TTCS
T ss_pred h-C--cchh
Confidence 7 6 8864
No 5
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=100.00 E-value=6.5e-56 Score=450.98 Aligned_cols=275 Identities=25% Similarity=0.360 Sum_probs=212.4
Q ss_pred eecChhhHHHHHHHHHHHHhcCCCceEEEEcchhhhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCcCCCceEEe
Q 016396 70 IELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVI 149 (390)
Q Consensus 70 i~l~~~e~~i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi 149 (390)
..+++....|++.+ ++. |+++|+|||||||+|||++|+|+||+|++. ++ ++++.|.... .+
T Consensus 15 ~~~~~~~~~v~~~l----~~~--G~~~ylVGG~VRD~LLg~~~~D~Di~t~a~-p~----~~~~~f~~~~--------~~ 75 (415)
T 3aql_A 15 KDISENALKVMYRL----NKA--GYEAWLVGGGVRDLLLGKKPKDFDVTTNAT-PE----QVRKLFRNCR--------LV 75 (415)
T ss_dssp GGGSCSCHHHHHHH----HHT--TCCEEEETHHHHHHHHSSCCSCCEEEESSC-HH----HHHHHTTTSC--------CC
T ss_pred HhCCHHHHHHHHHH----HHC--CCeEEEECHHHHHHHcCCCCCCEEEEcCCC-HH----HHHHHhhhCe--------Ee
Confidence 35677777776554 444 578999999999999999999999999985 54 4555553210 11
Q ss_pred cCCCCCCceeeEEEEEEcCEEEEeeecccccccC-----------CCCCc-ccccCCHHHHHhcCCCCccceeeecCCCc
Q 016396 150 PSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSE-----------NSRIP-TMRFGTAEEDAYRRDLTINSLFYNINTSS 217 (390)
Q Consensus 150 ~~n~~~~~~~~t~~~~~~~~~iD~~~~R~e~y~~-----------~~r~P-~v~~gti~eDl~RRDFTINAla~~l~~~~ 217 (390)
++.|+|+++.+++..+|++++|+|.|.. +|+++ .+.++|+++||.||||||||||||+.++.
T Consensus 76 ------g~~f~~~~v~~~~~~~ev~t~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~tl~eDl~RRDFTINAla~~~~~~~ 149 (415)
T 3aql_A 76 ------GRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFT 149 (415)
T ss_dssp ------CCSSSCCEEESSSCEEEEEECCC-----------------------CCCCCHHHHHTTSSBSGGGCEEETTTCC
T ss_pred ------cccCCEEEEEECCcEEEEeeecccccccccccccccccCCCcccccccCCCHHHHHhcCCccceeEEEeCCCCe
Confidence 3457888988889999999999987642 34443 46789999999999999999999999999
Q ss_pred eecCccccHHHhhCCCeecCCCCCcccccChhhHHHHHHHHhhcCCCCcHHHHHHhhcHHHHHHHhccCCHHHHHHHHHH
Q 016396 218 VEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDL 297 (390)
Q Consensus 218 i~D~~g~G~~DL~~~~IR~v~~p~~~F~eDPlRILRa~Rfaarlgf~Id~~T~~ai~~~~~~~~Ll~~vs~ERI~~El~k 297 (390)
++||+| |++||++|+||++++|.++|.|||+||||++|||+++||.|+++|+++|+.. ..++..+|.||++.||.|
T Consensus 150 l~D~~g-G~~DL~~~~Ir~v~~p~~~F~eDPlRiLRa~Rfaarlgf~i~~~T~~ai~~~---~~~l~~is~eRi~~E~~k 225 (415)
T 3aql_A 150 VRDYVG-GMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRL---ATLLNDIPPAHLFEESLK 225 (415)
T ss_dssp EECSSS-HHHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHTTCEECHHHHTHHHHH---GGGGGGSCHHHHHHHHHH
T ss_pred eeCCCC-CHHHHhCCeEEecCChhhhhhhCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---HHhhhcCChHHHHHHHHH
Confidence 999998 9999999999999988899999999999999999999999999999999864 566788999999999999
Q ss_pred HhcCCCHHHHHHHHHHcCcchHHhcCCCCCCcchhhhhhhcccchHHHHHHHHHHhcCCCC-CcccchhHHHHhhhc-cc
Q 016396 298 MVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTF-NDDQRRLSQYAALFL-PF 375 (390)
Q Consensus 298 iL~~~~~~~~L~lL~~~glL~~if~~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~llAaLlh-p~ 375 (390)
||.++++..++++|+++|+|..+| |++.......+ ..++.....|++.+++..-. .......++|||||| |+
T Consensus 226 iL~~~~~~~~l~~l~~~GlL~~~l--Pe~~~i~~~~q----~~h~~~v~~h~L~~~d~~i~~~~~~~~~L~lAALLH~di 299 (415)
T 3aql_A 226 LLQAGYGYETYKLLCEYHLFQPLF--PTITRYFTENG----DSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPL 299 (415)
T ss_dssp HHTSSCHHHHHHHHHHTTCSTTTC--HHHHTTCCSSS----CCHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTHHHH
T ss_pred HHcCCCHHHHHHHHHHcCChHHhc--hhHHHHhccCC----cchHHHHHHHHHHHHHHHHhcCCCCCHHHHHhHhcCcch
Confidence 999999999999999999999999 88543321111 12234445566665431100 012235666999999 89
Q ss_pred cCce
Q 016396 376 RNTT 379 (390)
Q Consensus 376 gk~~ 379 (390)
+|..
T Consensus 300 ~K~~ 303 (415)
T 3aql_A 300 LETA 303 (415)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9864
No 6
>2la3_A Uncharacterized protein; ATP binding, CTP binding, structural genomics, PSI-biology, structure initiative; NMR {Streptococcus pneumoniae}
Probab=96.39 E-value=0.04 Score=49.92 Aligned_cols=129 Identities=17% Similarity=0.203 Sum_probs=74.0
Q ss_pred HHHHHHHHhcCCCceEEEEcchhhhh----hhCCC----CCCeEEEEcC-CChHHHHHHHHHHHHhcCCcCCCceEEecC
Q 016396 81 SCLLNTLRHFNLETVLRVAGGWVRDK----LLGKD----CYDIDIALDN-MMGSEFATKVAEYLSATGETAPSGFGVIPS 151 (390)
Q Consensus 81 ~~l~~~l~~~~~~~~~ylVGG~VRD~----LLg~~----~~DiDia~~~-~~~~~f~~~l~~~l~~~g~~~~~~~~vi~~ 151 (390)
-.+++.+++.+.. +.||++|+||.. |-|++ .+|||++--. ....+--..+.+.+...-.. +
T Consensus 22 m~iL~~~~~L~Lp-d~~laAG~vrn~VWn~L~g~~~~~~i~DiDviYFD~d~s~e~e~~~e~~L~~~~p~----~----- 91 (191)
T 2la3_A 22 MAILTIIRDLGLK-DSWLAAGSVRNFIWNLLSDKSPFDHETDIDVIFFDPDFSYEETLLLEKKLREDFPQ----Y----- 91 (191)
T ss_dssp HHHHHHHHHTCCS-SCEEETHHHHHHHHGGGTTSCTTCCCSEEEEEECCTTSCHHHHHHHHHHHHHHCTT----S-----
T ss_pred HHHHHHHHHcCCc-hhhhhhhhhHhhHHHHhcCCCCCCCCCceeEEEECCCCCHHHHHHHHHHHHHhCCC----C-----
Confidence 4567777788764 579999999965 55664 4899998854 22233233344444332110 1
Q ss_pred CCCCCceeeEEEEEEcCEEEEeee-cccccccCCCCCcccccCCHHHHHhcCC-CCccceeeecCCC---ceecCccccH
Q 016396 152 NPDQSKHLETATMKLYDLWIDFVN-LRCEDYSENSRIPTMRFGTAEEDAYRRD-LTINSLFYNINTS---SVEDLTGRGI 226 (390)
Q Consensus 152 n~~~~~~~~t~~~~~~~~~iD~~~-~R~e~y~~~~r~P~v~~gti~eDl~RRD-FTINAla~~l~~~---~i~D~~g~G~ 226 (390)
..++-+ +|-... ..+.-| +.+ -+|+..+= -|.-|++..+..+ +++=|+ |+
T Consensus 92 ------------------~weVkNQArmHl~-~~~~~P---y~S-s~dAis~wpe~~TAvGvrl~~~~~lel~AP~--Gl 146 (191)
T 2la3_A 92 ------------------QWELKNQVYMHQH-SPHTAS---YTS-SRDAMSKYPERCTAVGLRLNEELDFELYVPY--GL 146 (191)
T ss_dssp ------------------EEEEEESTTTTSS-SSSCCC---CSS-HHHHHTTSSSTTTSCEEECCTTSCCEEECTT--CT
T ss_pred ------------------CEEEEeceecccC-CCCCCC---CcC-HHHHHHhchhhheeEEEEECCCCcEEEECCc--CH
Confidence 112211 110000 001111 223 45566665 5888999998653 578887 89
Q ss_pred HHhhCCCeecCCCCCcccccCh
Q 016396 227 ADLKHGKIVTPLPPKATFLDDP 248 (390)
Q Consensus 227 ~DL~~~~IR~v~~p~~~F~eDP 248 (390)
+||-+++||.. -.|.+|+
T Consensus 147 ~dlf~~~vrpn----p~~~~~~ 164 (191)
T 2la3_A 147 EDILNFQVRPT----PHFLENE 164 (191)
T ss_dssp HHHHTTEECCC----HHHHTCH
T ss_pred HHHhcCeeecC----ccccccc
Confidence 99999999952 3555543
No 7
>4e8j_A Lincosamide resistance protein; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: MSE LN0; 1.82A {Staphylococcus haemolyticus} PDB: 4e8i_A* 4fo1_A*
Probab=93.45 E-value=0.11 Score=45.78 Aligned_cols=53 Identities=34% Similarity=0.563 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCCceEEEEcchhhhhhhCC---CCCCeEEEEcCCChHHHHHHHHHHHHhcC
Q 016396 81 SCLLNTLRHFNLETVLRVAGGWVRDKLLGK---DCYDIDIALDNMMGSEFATKVAEYLSATG 139 (390)
Q Consensus 81 ~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~---~~~DiDia~~~~~~~~f~~~l~~~l~~~g 139 (390)
..+++.++..+ .+.||+|||-=|+++|+ +-+|+||.+.... .+.+.+.|...|
T Consensus 12 ~evl~~l~~~~--v~~~i~GGwAvD~~~G~~tR~H~DiDi~v~~~d----~~~l~~~L~~~G 67 (161)
T 4e8j_A 12 FYILDLFEHMK--VTYWLDGGWGVDVLTGKQQREHRDIDIDFDAQH----TQKVIQKLEDIG 67 (161)
T ss_dssp HHHHHHHHHHT--CCEEEEHHHHHHHHHTSCCSCCSEEEEEEEGGG----HHHHHHHHHHTT
T ss_pred HHHHHHHHhCC--CcEEEEcHhhhhHhcCCCCCcCCCeEEeecHHh----HHHHHHHHHHCC
Confidence 34566677665 66799999999999995 4689999996532 355667777655
No 8
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=91.73 E-value=0.51 Score=41.60 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=38.7
Q ss_pred ChhhHHHHHHHHHHHHhcCCCceEEEEcchhhhhhhCCC--CCCeEEEEcCCChHHHHHHHHHHHHhcC
Q 016396 73 TDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD--CYDIDIALDNMMGSEFATKVAEYLSATG 139 (390)
Q Consensus 73 ~~~e~~i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~--~~DiDia~~~~~~~~f~~~l~~~l~~~g 139 (390)
.+.-.+.+..+.+.|+..+ .+ |++||..--.+-|.+ ++||||.++.. + ++.+.+.|...|
T Consensus 15 ~~~~~~~L~~i~~~L~~~~--V~-~~l~Gs~Al~~~G~~~~~~DIDi~i~~~---d-a~~~~~~L~~~g 76 (169)
T 2fcl_A 15 RPEYLRVLRXIYDRLXNEX--VN-WVVTGSLSFALQGVPVEVHDIDIQTDEE---G-AYEIERIFSEFV 76 (169)
T ss_dssp CHHHHHHHHHHHHHHTTSS--CC-EEEEHHHHHHHTTCCCCCCSEEEEECHH---H-HHHHHHHTGGGE
T ss_pred cHHHHHHHHHHHHHHHhcC--CC-EEEeHHHHHHHcCCCCCCCccEEEeccc---C-HHHHHHHHHHHh
Confidence 3444566666677776654 44 555555556888864 89999999642 2 466777776544
No 9
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=90.64 E-value=2.4 Score=40.89 Aligned_cols=98 Identities=16% Similarity=0.169 Sum_probs=59.6
Q ss_pred cceecChhhHHHH----HHHHHHHHhcCCCceEEEEcchhhhhhhCCCCCCeEEEEcCCCh----HHHHHHHHHHHHhcC
Q 016396 68 DKIELTDTETKIF----SCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMG----SEFATKVAEYLSATG 139 (390)
Q Consensus 68 ~~i~l~~~e~~i~----~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~~~~~----~~f~~~l~~~l~~~g 139 (390)
..+.-|++|.+.. +.+.+++++.-.+.++++.|-+++.. +.+..|+|+++....+ .++...+.+.+...+
T Consensus 30 ~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~--~~~~SDiDl~v~~~~~~~~~~~~l~~l~~~L~~~~ 107 (323)
T 3nyb_A 30 AYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDL--YLPGSDIDCVVTSELGGKESRNNLYSLASHLKKKN 107 (323)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTTC--CCTTSCEEEEECSSCCGGGHHHHHHHHHHHHHHTT
T ss_pred HHhCcCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccCC--CCCCCCceEEEecCCCChhHHHHHHHHHHHHhhCC
Confidence 3445577776444 44555555554467899999999974 5566999999976532 235566777776644
Q ss_pred CcCCCceEEecCCCCCCceeeEEEEE--EcCEEEEee
Q 016396 140 ETAPSGFGVIPSNPDQSKHLETATMK--LYDLWIDFV 174 (390)
Q Consensus 140 ~~~~~~~~vi~~n~~~~~~~~t~~~~--~~~~~iD~~ 174 (390)
.. ..+.+|. + ....+.++. ..|..+|++
T Consensus 108 ~~--~~v~~I~-~----ArVPIIk~~~~~~gi~vDIs 137 (323)
T 3nyb_A 108 LA--TEVEVVA-K----ARVPIIKFVEPHSGIHIAVS 137 (323)
T ss_dssp SC--SSCEEEE-S----SSCEEEEEEETTTTEEEEEE
T ss_pred Cc--eEEEEEe-c----cCCCEEEEEEcCCCceEEEE
Confidence 32 2333442 1 123555555 357788886
No 10
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=76.03 E-value=13 Score=37.09 Aligned_cols=97 Identities=18% Similarity=0.120 Sum_probs=58.8
Q ss_pred cceecChhhHHHHH----HHHHHHHhcCCCceEEEEcchhhhhhhCCCCCCeEEEEcCCCh---HHHHHHHHHHHHhcCC
Q 016396 68 DKIELTDTETKIFS----CLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMG---SEFATKVAEYLSATGE 140 (390)
Q Consensus 68 ~~i~l~~~e~~i~~----~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~~~~~---~~f~~~l~~~l~~~g~ 140 (390)
..+..|++|....+ .+.+++++.-.+.+++++|-+++.+-+ +..|+|+++....+ .++..++.+.+...+
T Consensus 53 ~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~--~~SDiDl~v~~~~~~~~~~~l~~l~~~L~~~~- 129 (405)
T 4e8f_A 53 NEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLAL--KNSDMDLCVLMDSRVQSDTIALQFYEELIAEG- 129 (405)
T ss_dssp HHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCB--SSCCEEEEEECCC---CTTHHHHHHHHHHHTT-
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCC--CCCCEEEEEEecCCCCHHHHHHHHHHHHHhcC-
Confidence 45677888865444 444455554456789999999998744 55799999876432 235556666665532
Q ss_pred cCCCceEEecCCCCCCceeeEEEEEE---c----CEEEEeee
Q 016396 141 TAPSGFGVIPSNPDQSKHLETATMKL---Y----DLWIDFVN 175 (390)
Q Consensus 141 ~~~~~~~vi~~n~~~~~~~~t~~~~~---~----~~~iD~~~ 175 (390)
..+..|. .....+.++.+ . |+.+|++-
T Consensus 130 ---~~v~~i~-----~ArVPIIK~~~d~~~g~~~gi~~DIs~ 163 (405)
T 4e8f_A 130 ---FEGKFLQ-----RARIPIIKLTSDTKNGFGASFQCDIGF 163 (405)
T ss_dssp ---EEEEEEE-----ETTEEEEEEEEESSSSCCTTCCEEEEE
T ss_pred ---CeeEEec-----cCCCcEEEEEeccCCCccCceEEEEee
Confidence 1222221 11235666664 2 78888873
No 11
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=67.06 E-value=30 Score=33.39 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEcch-hhhhhhCCCCCCeEEEEcC
Q 016396 74 DTETKIFSCLLNTLRHFNLETVLRVAGGW-VRDKLLGKDCYDIDIALDN 121 (390)
Q Consensus 74 ~~e~~i~~~l~~~l~~~~~~~~~ylVGG~-VRD~LLg~~~~DiDia~~~ 121 (390)
+.-+++++.+.+.+++...+.++++.|-+ |..+ +.+..|+|+++..
T Consensus 47 ~~r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl--~lp~SDIDl~v~~ 93 (353)
T 2ikf_A 47 RHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGV--HEKGSDVDFVVLN 93 (353)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCEEEEESHHHHHSS--CCTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEEEecCccccCC--CCCCcceeEEEee
Confidence 34456778888888887778899999999 5654 5667899999853
No 12
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=66.62 E-value=31 Score=35.51 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=47.9
Q ss_pred CCceEEEEcchhhhhhhCCCCCCeEEEEcCCC---hHHHHHHHHHHHHhcCCcCCCceEEecCCCCCCceeeEEEEEEcC
Q 016396 92 LETVLRVAGGWVRDKLLGKDCYDIDIALDNMM---GSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYD 168 (390)
Q Consensus 92 ~~~~~ylVGG~VRD~LLg~~~~DiDia~~~~~---~~~f~~~l~~~l~~~g~~~~~~~~vi~~n~~~~~~~~t~~~~~~~ 168 (390)
.+.+++.+|-+.-..- .+..|||+++-+.. .++|...+.+.+..... . ..+..|. .....+.++...|
T Consensus 93 ~~~~v~~FGS~~lG~~--~p~SDID~~~v~p~~~~~~dff~~l~~~L~~~~~-v-~~v~~I~-----~A~VPIIK~~~~g 163 (514)
T 1q79_A 93 VGGKIFTFGSYRLGVH--TKGADIDALCVAPRHVDRSDFFTSFYDKLKLQEE-V-KDLRAVE-----EAFVPVIKLCFDG 163 (514)
T ss_dssp CBCEEEEEHHHHHTCC--CTTCCEEEEEEECTTSCHHHHTTHHHHHHHTCTT-E-EEEEEET-----TSSSCEEEEEETT
T ss_pred CCceEEEeeeeccCCC--CCCCceeEEEecCCcCCHHHHHHHHHHHHhcCcc-C-ceEEEec-----CCcccEEEEEECC
Confidence 3578998877665444 35689999876642 24565666666654321 1 2344442 1234677788889
Q ss_pred EEEEeeecc
Q 016396 169 LWIDFVNLR 177 (390)
Q Consensus 169 ~~iD~~~~R 177 (390)
+.+|++-.+
T Consensus 164 i~vDL~f~~ 172 (514)
T 1q79_A 164 IEIDILFAR 172 (514)
T ss_dssp EEEEEEEEE
T ss_pred eeEEEEEec
Confidence 999987655
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=64.43 E-value=12 Score=29.94 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=31.5
Q ss_pred eecChhhHHHHHHHHHHHHhcCCCceEEEEcchhhhhhhCCCCCCeEEEEcCC
Q 016396 70 IELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNM 122 (390)
Q Consensus 70 i~l~~~e~~i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~~~ 122 (390)
+.+++++. +.+.+.+++......+|+-|-++|.- ..+-.||||++...
T Consensus 7 ~~l~~~~~---~~i~~~l~~~~~v~~v~LFGS~ArG~--~~~~SDIDl~V~~~ 54 (114)
T 1no5_A 7 LDIKSEEL---AIVKTILQQLVPDYTVWAFGSRVKGK--AKKYSDLDLAIISE 54 (114)
T ss_dssp CCSCHHHH---HHHHHHHHHHCTTSEEEEEGGGTTTC--CCTTCCEEEEEECS
T ss_pred cCCCHHHH---HHHHHHHHHhCCCCEEEEEeccCCCC--CCCCCCeEEEEEeC
Confidence 44555443 34555665543345899999999964 23458999998654
No 14
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=59.62 E-value=42 Score=34.61 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=48.9
Q ss_pred CceEEEEcchhhhhhhCCCCCCeEEEEcCC---ChHHHHHHHHHHHHhcCCcCCCceEEecCCCCCCceeeEEEEEEcCE
Q 016396 93 ETVLRVAGGWVRDKLLGKDCYDIDIALDNM---MGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDL 169 (390)
Q Consensus 93 ~~~~ylVGG~VRD~LLg~~~~DiDia~~~~---~~~~f~~~l~~~l~~~g~~~~~~~~vi~~n~~~~~~~~t~~~~~~~~ 169 (390)
+.+++++|-+.-..- .+..|||+++.+. ..++|...+.+.+..... . ..+..|. .....+.++...|.
T Consensus 81 ~~~V~~FGSy~lG~~--~p~SDID~~v~~p~~~~~~dff~~l~~~L~~~~~-v-~~v~~I~-----~A~VPIIK~~~~gi 151 (530)
T 2hhp_A 81 GGKIFTYGSYRLGVH--GPGSDIDTLVVVPKHVTREDFFTVFDSLLRERKE-L-DEIAPVP-----DAFVPIIKIKFSGI 151 (530)
T ss_dssp BCEEEEEHHHHHTCC--CTTCCEEEEEEECTTCCHHHHHHHHHHHHHTCTT-E-EEEEEET-----TSSSCEEEEEETTE
T ss_pred CceEEEecccccCCC--CCCCceeEEEecCCcCCHHHHHHHHHHHHhcCCC-C-ceEEEec-----CCcccEEEEEECCE
Confidence 478998877765444 4568999988664 234666667776654221 1 2344442 12346777888999
Q ss_pred EEEeeeccc
Q 016396 170 WIDFVNLRC 178 (390)
Q Consensus 170 ~iD~~~~R~ 178 (390)
.+|++-.+.
T Consensus 152 ~vDL~f~~~ 160 (530)
T 2hhp_A 152 SIDLICARL 160 (530)
T ss_dssp EEEEEEEEC
T ss_pred eeEEEEecc
Confidence 999987664
No 15
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=56.44 E-value=22 Score=35.03 Aligned_cols=60 Identities=18% Similarity=0.346 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHhcCCCceEEEEcchhhhhhhCCC-CCCeEEEEcCCChHH-----HHHHHHHHHHhc
Q 016396 75 TETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD-CYDIDIALDNMMGSE-----FATKVAEYLSAT 138 (390)
Q Consensus 75 ~e~~i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~-~~DiDia~~~~~~~~-----f~~~l~~~l~~~ 138 (390)
+-..+.+.|.+.++....+..+-++||+=| |++ ++|+||++....+.. +...+.+.|...
T Consensus 178 ea~~ia~~i~~~l~~~~~~~~v~i~GSyRR----gket~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~ 243 (381)
T 1jms_A 178 EAEAVSMLVKEAVVTFLPDALVTMTGGFRR----GKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQ 243 (381)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECHHHHT----TCSCBSSEEEEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEcccccc----CCCCcCCeEEEEeCCCccccchhhHHHHHHHHHHhC
Confidence 334667788888888766677777777666 664 799999998654431 333555556554
No 16
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=55.47 E-value=19 Score=27.98 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCceEEEEcchhhhhhhCCCC-CCeEEEEcC
Q 016396 80 FSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDC-YDIDIALDN 121 (390)
Q Consensus 80 ~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~-~DiDia~~~ 121 (390)
++.+.+.+++......+|+-|-+.|.-. .+- .||||++..
T Consensus 4 l~~i~~~l~~~~~~~~v~LFGS~ArG~~--~~~~SDiDllV~~ 44 (96)
T 1ylq_A 4 MKEIKEITKKDVQDAEIYLYGSVVEGDY--SIGLSDIDVAIVS 44 (96)
T ss_dssp HHHHHHHHHHHCTTCEEEEESHHHHCCS--SSCCCSEEEEEEC
T ss_pred HHHHHHHHHHHcCCcEEEEEEEEEeCCC--CCCCCceEEEEEe
Confidence 4455666665322368999999999752 344 799998854
No 17
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=52.68 E-value=1e+02 Score=31.23 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=37.9
Q ss_pred cceecChhhHHHHHHHHHHHHh----cCCCceEEEEcchhhhhhhCCCCCCeEEEEc
Q 016396 68 DKIELTDTETKIFSCLLNTLRH----FNLETVLRVAGGWVRDKLLGKDCYDIDIALD 120 (390)
Q Consensus 68 ~~i~l~~~e~~i~~~l~~~l~~----~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~ 120 (390)
..+.+|++|..+...+.+.++. .-.+.++++.|-++-.+ |.+..|+|+++.
T Consensus 143 ~~i~PT~eE~~~R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL--~lp~SDIDlvl~ 197 (464)
T 3pq1_A 143 KEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTF--GKLGCDLDMFLD 197 (464)
T ss_dssp HHHBCCHHHHHHHHHHHHHHHHHHTTTSTTCEEEEEGGGTSSC--CBTTCCEEEEEE
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccCC--CCCCCCeEEEEe
Confidence 5678899998776666555544 33468999999998554 567899999974
No 18
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=51.06 E-value=23 Score=34.69 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=41.5
Q ss_pred ceecChhhHHHHHHHHHHHHhcCCCceEEEEcchhhhhhhCCC-CCCeEEEEcCCChH---HHHHHHHHHHHhc
Q 016396 69 KIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD-CYDIDIALDNMMGS---EFATKVAEYLSAT 138 (390)
Q Consensus 69 ~i~l~~~e~~i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~-~~DiDia~~~~~~~---~f~~~l~~~l~~~ 138 (390)
.|.+ .+-..+.+.|.+.++....+..+-++||+=| |++ ++|+||++....+. .+...+.+.|...
T Consensus 153 ripr-~ea~~i~~~i~~~l~~~~~~~~v~i~GSyRR----gket~gDvDilit~~~~~~~~~ll~~v~~~L~~~ 221 (360)
T 2ihm_A 153 PVRR-ADAEALQQLIEAAVRQTLPGATVTLTGGFRR----GKLQGHDVDFLITHPEEGQEVGLLPKVMSCLQSQ 221 (360)
T ss_dssp CEEH-HHHHHHHHHHHHHHHTTCTTCEEEECHHHHT----TCSEESEEEEEEECSSTTTTTTHHHHHHHHHHHT
T ss_pred CEEH-HHHHHHHHHHHHHHHhcCCCcEEEEcccccc----CCCccCCeEEEEecCChhhhhhHHHHHHHHHHhC
Confidence 4444 3335667788888888766677777777665 664 79999999765433 1223455555443
No 19
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=48.71 E-value=28 Score=33.67 Aligned_cols=52 Identities=23% Similarity=0.439 Sum_probs=35.5
Q ss_pred cceecChhhHHHHHHHHHHHHhcCCCceEEEEcchhhhhhhCCC-CCCeEEEEcCCCh
Q 016396 68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD-CYDIDIALDNMMG 124 (390)
Q Consensus 68 ~~i~l~~~e~~i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~-~~DiDia~~~~~~ 124 (390)
..|.+ .+-..+.+.|.+.++....+..+-++|++=| |++ ++|+||++....+
T Consensus 145 ~ripr-~ea~~ia~~i~~~l~~~~~~~~v~i~GS~RR----gket~gDiDilit~~~~ 197 (335)
T 2bcq_A 145 ERMPR-EEATEIEQTVQKAAQAFNSGLLCVACGSYRR----GKATCGDVDVLITHPDG 197 (335)
T ss_dssp CCEEH-HHHHHHHHHHHHHHHTTCTTCEEEECHHHHT----TCSEESSEEEEEECTTS
T ss_pred CCEEH-HHHHHHHHHHHHHHHhcCCCcEEEEcccccc----CCCCCCCeEEEEecCCc
Confidence 44555 3334667788888888766667666666554 654 7999999986544
No 20
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=46.06 E-value=38 Score=32.71 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=34.8
Q ss_pred cceecChhhHHHHHHHHHHHHhcCCCceEEEEcchhhhhhhCCC-CCCeEEEEcCC
Q 016396 68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD-CYDIDIALDNM 122 (390)
Q Consensus 68 ~~i~l~~~e~~i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~-~~DiDia~~~~ 122 (390)
..|.+ .+-..+.+.|.+.++....+..+-++|++=| |++ ++|+||++...
T Consensus 148 ~ripr-~ea~~ia~~i~~~l~~~~~~~~v~i~GS~RR----gket~gDiDilit~~ 198 (335)
T 2fmp_A 148 KRIPR-EEMLQMQDIVLNEVKKVDSEYIATVCGSFRR----GAESSGDMDVLLTHP 198 (335)
T ss_dssp SCEEH-HHHHHHHHHHHHHHHHHCTTCEEEECHHHHT----TCSEESSEEEEEECT
T ss_pred CcEEH-HHHHHHHHHHHHHHHhcCCCcEEEecccccc----ccCccCCeEEEEECC
Confidence 34444 3345667788888888766677777776555 665 79999999764
No 21
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=40.48 E-value=33 Score=26.62 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEcchhhhhhhCCCCCCeEEEEcC
Q 016396 77 TKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDN 121 (390)
Q Consensus 77 ~~i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~~ 121 (390)
+.+.+.+...+++++. ..+|+-|-.+|.- ..+-.||||++..
T Consensus 10 ~~l~~~i~~l~~~~~v-~~v~LFGS~arG~--~~~~SDiDl~V~~ 51 (98)
T 1wot_A 10 RARREAVLSLCARHGA-VRVRVFGSVARGE--AREDSDLDLLVAF 51 (98)
T ss_dssp HHHHHHHHHHHHHHTC-SSCEECSHHHHTC--CCTTCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCC-cEEEEEccccCCC--CCCCCCEEEEEEe
Confidence 3444455555556653 5789999999974 2345899999854
No 22
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=37.17 E-value=55 Score=26.18 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=20.7
Q ss_pred ceEEEEcchhhhhhhCCCCCCeEEEEcCC
Q 016396 94 TVLRVAGGWVRDKLLGKDCYDIDIALDNM 122 (390)
Q Consensus 94 ~~~ylVGG~VRD~LLg~~~~DiDia~~~~ 122 (390)
..+|+-|-++|.- ..+-.||||++...
T Consensus 34 ~~v~LFGS~ArG~--~~~~SDIDl~V~~~ 60 (111)
T 2rff_A 34 EEVYIFGSRARGD--YLDTSDIDILFVFK 60 (111)
T ss_dssp EEEEEESHHHHSC--CCTTCCEEEEEEES
T ss_pred cEEEEEeeeecCC--CCCCCCEEEEEEec
Confidence 5799999999964 23458999998653
No 23
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=36.27 E-value=15 Score=33.38 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHhcCCCCCcccchhHHHHhhhccccCcee
Q 016396 341 AYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTY 380 (390)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~~~~~~~l~llAaLlhp~gk~~~ 380 (390)
.|...++.+...+... ...+..++.+||||||+|+..+
T Consensus 28 ~H~~rV~~~a~~ia~~--~~~d~~~l~~AAlLHDig~~k~ 65 (223)
T 3djb_A 28 YHIRRVHKMAISLSEQ--EGGNRFIIEMAALLHDVADEKL 65 (223)
T ss_dssp HHHHHHHHHHHHHHTT--TCSCHHHHHHHHTTHHHHC--C
T ss_pred HHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhhcccccc
Confidence 3444444444444321 1234456668999999998644
No 24
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=36.15 E-value=23 Score=24.23 Aligned_cols=34 Identities=12% Similarity=0.303 Sum_probs=24.6
Q ss_pred cceecChhhHHHHHHHHHHHHhcCCCceEEEEcchhhhhhhC
Q 016396 68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLG 109 (390)
Q Consensus 68 ~~i~l~~~e~~i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg 109 (390)
-.|.||++|...++ +.++..|.. +..++|..+||
T Consensus 18 i~vRlt~eE~~~l~---~~A~~~g~s-----~SeyiR~~~l~ 51 (51)
T 2ba3_A 18 RTLRFSPVEDETIR---KKAEDSGLT-----VSAYIRNAALN 51 (51)
T ss_dssp EEEEECHHHHHHHH---HHHHHHTCC-----HHHHHHHHHHC
T ss_pred EEEEECHHHHHHHH---HHHHHhCCC-----HHHHHHHHHcC
Confidence 36889999998855 444555532 68889988876
No 25
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=35.70 E-value=28 Score=32.04 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHHhcCCCCCcccchhHHHHhhhccccCc
Q 016396 340 TAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNT 378 (390)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~~~~~l~llAaLlhp~gk~ 378 (390)
..|...++.....+... .+.+..++.+||||||+|+.
T Consensus 27 ~~H~~rV~~~a~~ia~~--~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAAD--DDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTT--SCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhhcccc
Confidence 34444445444444321 12344566789999999985
No 26
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=34.35 E-value=20 Score=32.31 Aligned_cols=18 Identities=6% Similarity=0.102 Sum_probs=13.7
Q ss_pred cchhHHHHhhhccccCce
Q 016396 362 QRRLSQYAALFLPFRNTT 379 (390)
Q Consensus 362 ~~~l~llAaLlhp~gk~~ 379 (390)
+..++.+||||||+|+..
T Consensus 48 d~~~l~lAAlLHDigk~~ 65 (225)
T 2qgs_A 48 DTLVIELSSLLHDTVDSK 65 (225)
T ss_dssp CCHHHHHHHHHTTTTCCS
T ss_pred CHHHHHHHHHHHcCCCCC
Confidence 344566899999999853
No 27
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=33.33 E-value=15 Score=33.36 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=13.1
Q ss_pred cchhHHHHhhhccccCcee
Q 016396 362 QRRLSQYAALFLPFRNTTY 380 (390)
Q Consensus 362 ~~~l~llAaLlhp~gk~~~ 380 (390)
+..++.+||||||+|+..+
T Consensus 47 d~~~l~~AalLHDig~~k~ 65 (223)
T 3dto_A 47 DVFVVQIAALFHDLIDDKL 65 (223)
T ss_dssp CHHHHHHHHHHHSTTC---
T ss_pred CHHHHHHHHHHhhcccccc
Confidence 4456668999999998643
No 28
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=33.32 E-value=61 Score=33.45 Aligned_cols=119 Identities=19% Similarity=0.193 Sum_probs=63.6
Q ss_pred ceecChhhHHHHHHHHHHHHhcCCCceEEEEcchhhhhhhCCC-CCCeEEEEcCCChHHHHHHHHHHHHhcCCcCCCceE
Q 016396 69 KIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD-CYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFG 147 (390)
Q Consensus 69 ~i~l~~~e~~i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~-~~DiDia~~~~~~~~f~~~l~~~l~~~g~~~~~~~~ 147 (390)
.|.+ .+-..+.+.+.+.++.......+-++|+.=| |++ ++|+||++....+. .+.+.|...+.. ..
T Consensus 157 r~~~-~e~~~~~~~i~~~l~~~~~~~~~~~~Gs~RR----gke~~gDiD~li~~~~~~----~v~~~l~~~~~~----~~ 223 (575)
T 3b0x_A 157 RRPL-GAVLSLARSLLEAIRALPGVERAELCGSARR----YKDTVGDLDFLVASREGE----RAVEGFVRLPQV----KE 223 (575)
T ss_dssp CEEH-HHHHHHHHHHHHHHHTSTTCCEEEECHHHHT----TCSEESSEEEEEECSSHH----HHHHHHHTSTTE----EE
T ss_pred ceeH-HHHHHHHHHHHHHHHhCCCCcEEEEcccccc----CCCccCCeEEEEeCCCHH----HHHHHHHhCcch----hh
Confidence 4444 3334566778888887654556666665544 664 79999999876554 344555443221 11
Q ss_pred EecCCCCCCceeeEEEEEE-cCEEEEeeecccccccCCCCCccccc-C------CHHHHHhcCCCCcccee
Q 016396 148 VIPSNPDQSKHLETATMKL-YDLWIDFVNLRCEDYSENSRIPTMRF-G------TAEEDAYRRDLTINSLF 210 (390)
Q Consensus 148 vi~~n~~~~~~~~t~~~~~-~~~~iD~~~~R~e~y~~~~r~P~v~~-g------ti~eDl~RRDFTINAla 210 (390)
++...+. .+++++ +|..+||.-.-.+.|..- -.-| | .+..=+..|.+++|.-.
T Consensus 224 ~~~~g~~------k~~~~~~~~~rvDl~~~~~~~~~~a----l~~~TGs~~~n~~lR~~A~~~g~~l~~~g 284 (575)
T 3b0x_A 224 VYAKGKE------RATVFLKNGLQVDLRVVPPESYGAG----LQYLTGSAAHSIRLRALAQEKGLKLSEYG 284 (575)
T ss_dssp EEEECSS------EEEEEETTSCEEEEEEECGGGHHHH----HHHHHCCHHHHHHHHHHHHHTTCEEETTE
T ss_pred HhhcCCC------ceEEEccCCcEEEEEEECHHHHHHH----HHHhhCCHHHHHHHHHHHHHcCCCcchhh
Confidence 2222211 133343 577888876555543210 0011 1 34555566777777443
No 29
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=32.21 E-value=61 Score=30.79 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=35.9
Q ss_pred cceecChhhHHHHH----HHHHHHHhcCCCceEEEEcchhhhhhhCCCCCCeEEEEcC
Q 016396 68 DKIELTDTETKIFS----CLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDN 121 (390)
Q Consensus 68 ~~i~l~~~e~~i~~----~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~~ 121 (390)
..|..|++|.+... .|.+++++.-.+.++++.|-++-.+ +.+..|+|+++..
T Consensus 25 ~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~--~~~~SDiDl~v~~ 80 (349)
T 4fh3_A 25 NEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGL--ALKNSDMDLCVLM 80 (349)
T ss_dssp HHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTC--CBSSCCEEEEEEC
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCC--CCCCCCEEEEEec
Confidence 45677888876544 4444455544568999999988654 3456899998854
No 30
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=31.05 E-value=16 Score=32.52 Aligned_cols=19 Identities=21% Similarity=0.245 Sum_probs=12.8
Q ss_pred cchhHHHHhhhccccCcee
Q 016396 362 QRRLSQYAALFLPFRNTTY 380 (390)
Q Consensus 362 ~~~l~llAaLlhp~gk~~~ 380 (390)
+..++.+||||||+|+..+
T Consensus 47 d~~~v~~AAlLHDig~~~~ 65 (209)
T 3b57_A 47 DLFTIELAALFHDYSDIKL 65 (209)
T ss_dssp CHHHHHHHHHHTTCCC---
T ss_pred CHHHHHHHHHHhccCcccC
Confidence 3445668999999998754
No 31
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=28.62 E-value=19 Score=36.86 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=13.8
Q ss_pred chhHHHHhhhccccCcee
Q 016396 363 RRLSQYAALFLPFRNTTY 380 (390)
Q Consensus 363 ~~l~llAaLlhp~gk~~~ 380 (390)
..++..|||+||+|.+.+
T Consensus 124 ~~~v~~AaLlHDIGH~PF 141 (480)
T 3irh_A 124 RLITLCAALLHDVGHGPY 141 (480)
T ss_dssp HHHHHHHHHHTTTTCCTT
T ss_pred HHHHHHHHHHhccCCCCc
Confidence 345558999999999854
No 32
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=26.11 E-value=26 Score=32.61 Aligned_cols=34 Identities=9% Similarity=-0.043 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCCCCcccchhHH-HHhhhccccCcee
Q 016396 343 LDAAWDLTQLIGSSTFNDDQRRLSQ-YAALFLPFRNTTY 380 (390)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~l~l-lAaLlhp~gk~~~ 380 (390)
++++..+++.+... ..+..|+ +|||+||+|+...
T Consensus 61 l~HaLQTAe~ar~d----g~d~dw~~laaLlHDLGkll~ 95 (250)
T 2ibn_A 61 SFHAFQTAEGIRKA----HPDKDWFHLVGLLHDLGKVLA 95 (250)
T ss_dssp HHHHHHHHHHHHHH----STTCHHHHHHHHHTTGGGHHH
T ss_pred HHHHHHHHHHHHHh----CcChhHHHHHHHHhccHhhhc
Confidence 45556666655421 1121465 8999999999753
No 33
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=25.77 E-value=1.3e+02 Score=28.30 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHhcCCCceEEEEcch-hhhhhhCCCCCCeEEEEcCCChHHH
Q 016396 75 TETKIFSCLLNTLRHFNLETVLRVAGGW-VRDKLLGKDCYDIDIALDNMMGSEF 127 (390)
Q Consensus 75 ~e~~i~~~l~~~l~~~~~~~~~ylVGG~-VRD~LLg~~~~DiDia~~~~~~~~f 127 (390)
.|+.+++.|++.++.-. ..++-+.||. ++.-.-.-.-.|+||++-....+.|
T Consensus 5 ~e~em~~~i~~~a~~d~-rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~~~~ 57 (294)
T 2pbe_A 5 SEQEMMDIFLDFALNDE-RIRLVTLEGSRTNRNIPPDNFQDYDISYFVTDVESF 57 (294)
T ss_dssp CHHHHHHHHHHHHHHCT-TEEEEEEC------------CCCEEEEEEESCHHHH
T ss_pred CHHHHHHHHHHHHcCCc-CEEEEEEecCCCCCCCCCCCcccceEEEEEcCchHh
Confidence 46778899999988753 3555566665 3322333346799998766544444
No 34
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=25.60 E-value=23 Score=30.74 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.5
Q ss_pred hHHHHhhhccccCce
Q 016396 365 LSQYAALFLPFRNTT 379 (390)
Q Consensus 365 l~llAaLlhp~gk~~ 379 (390)
...+|+||||+||..
T Consensus 43 ~~~~agLLHDIGk~~ 57 (188)
T 2o08_A 43 KAELAAIFHDYAKFR 57 (188)
T ss_dssp HHHHHHHHTTTTTTS
T ss_pred HHHHHHHHHHHcCCC
Confidence 355899999999984
No 35
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=25.38 E-value=16 Score=33.08 Aligned_cols=19 Identities=16% Similarity=0.072 Sum_probs=12.9
Q ss_pred cchhHHHHhhhccccCcee
Q 016396 362 QRRLSQYAALFLPFRNTTY 380 (390)
Q Consensus 362 ~~~l~llAaLlhp~gk~~~ 380 (390)
+..++.+||||||+|+..+
T Consensus 52 d~~ll~lAAlLHDigk~k~ 70 (231)
T 2pjq_A 52 NLNLTLAAAWLHDVIDDKL 70 (231)
T ss_dssp CHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHcCCcccC
Confidence 3456668999999998543
No 36
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=24.62 E-value=25 Score=30.61 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=13.1
Q ss_pred hHHHHhhhccccCcee
Q 016396 365 LSQYAALFLPFRNTTY 380 (390)
Q Consensus 365 l~llAaLlhp~gk~~~ 380 (390)
...+|+||||+||...
T Consensus 44 ~~~~AgLLHDiGk~~~ 59 (190)
T 3ccg_A 44 KARIAGLVHDCAKKLP 59 (190)
T ss_dssp HHHHHHHHTTTTTTSC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 3458999999999864
No 37
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=24.04 E-value=26 Score=30.75 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=12.9
Q ss_pred hHHHHhhhccccCcee
Q 016396 365 LSQYAALFLPFRNTTY 380 (390)
Q Consensus 365 l~llAaLlhp~gk~~~ 380 (390)
.+.+|+||||+||...
T Consensus 51 ~~~~AgLLHDIGK~~~ 66 (196)
T 2ogi_A 51 KAGLAALLHDYAKELS 66 (196)
T ss_dssp HHHHHHHHTTTTTTCC
T ss_pred HHHHHHHHHHcCCcCC
Confidence 3558999999999853
No 38
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=23.47 E-value=2e+02 Score=28.92 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=49.9
Q ss_pred cceecChhhHH----HHHHHHHHHHhcCCCceEEEEcchhhhhhhCCCCCCeEEEEcCCCh---HHHHHHHHHHHHhcCC
Q 016396 68 DKIELTDTETK----IFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMG---SEFATKVAEYLSATGE 140 (390)
Q Consensus 68 ~~i~l~~~e~~----i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~~~~~---~~f~~~l~~~l~~~g~ 140 (390)
..|..+++|.. ..+.|.+.++.. +.++.++|-+-|+--|.-. +|+||.+--... +++.+.-.+.+...-.
T Consensus 12 ~~i~P~~~E~~~~~~~~~~I~~~L~~~--~~~v~~~GS~AkgT~Lrg~-sDIDIfv~f~~~~~~e~l~~~~l~~~~e~l~ 88 (437)
T 1r89_A 12 ELVIPDEEEVRKGREAEEELRRRLDEL--GVEYVFVGSYARNTWLKGS-LEIDVFLLFPEEFSKEELRERGLEIGKAVLD 88 (437)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHHHHH--TCCEEEEHHHHHTCCCTTC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHSS
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHHhC--CCeEEEeccccCCCcCCCC-CCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44556666653 334555555553 3577888888888776533 588877643211 2222211112222111
Q ss_pred cCCCceEEecCCCCCCceeeEEEEEEcCEEEEeeec
Q 016396 141 TAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNL 176 (390)
Q Consensus 141 ~~~~~~~vi~~n~~~~~~~~t~~~~~~~~~iD~~~~ 176 (390)
.+. +.. +.| ..+++.+.|+.+|++++
T Consensus 89 ----~~~-~~y----a~h-pyV~~~f~g~~vDVVP~ 114 (437)
T 1r89_A 89 ----SYE-IRY----AEH-PYVHGVVKGVEVDVVPC 114 (437)
T ss_dssp ----SEE-EEE----SSS-EEEEEEETTEEEEEEEE
T ss_pred ----Hhh-hhc----cCC-ceEEEEecceEEEEEEE
Confidence 111 111 112 34566678999999986
No 39
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=21.20 E-value=20 Score=35.56 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=14.0
Q ss_pred chhHHHHhhhccccCce
Q 016396 363 RRLSQYAALFLPFRNTT 379 (390)
Q Consensus 363 ~~l~llAaLlhp~gk~~ 379 (390)
+.+.++||||||+||..
T Consensus 103 r~~l~~aALLHDIGKl~ 119 (393)
T 3kq5_A 103 RYALFSAGLLLEVAHAV 119 (393)
T ss_dssp HHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHhccchhe
Confidence 45666899999999994
No 40
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=20.59 E-value=1.3e+02 Score=30.41 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEEcchhhhhhhCC--CCCCeEEEEcCC
Q 016396 78 KIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGK--DCYDIDIALDNM 122 (390)
Q Consensus 78 ~i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~--~~~DiDia~~~~ 122 (390)
.+...|..++++.-.+.++++.|.+|+ .|. +..|+|+++...
T Consensus 43 ~a~~~l~~~v~~~~p~a~v~~FGS~v~---~Gl~lp~SDiDl~~~~~ 86 (468)
T 2b4v_A 43 RAQQQLQGLADKWTPDAKVYCCGSMVT---YGQMERGSDLDLACMFD 86 (468)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEETHHHH---HSSCBTTCCEEEEEECS
T ss_pred HHHHHHHHHHHHHCCCcEEEEeeCchh---cCCCCCCCceeEEEecC
Confidence 344556666666666789999999995 454 578999999754
No 41
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=20.41 E-value=40 Score=33.09 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=13.1
Q ss_pred hhHHHHhhhccccCce
Q 016396 364 RLSQYAALFLPFRNTT 379 (390)
Q Consensus 364 ~l~llAaLlhp~gk~~ 379 (390)
.....||||||+|+..
T Consensus 75 ~~~~~AaLLHDiG~~p 90 (371)
T 2hek_A 75 ELVKLAGLLHDLGHPP 90 (371)
T ss_dssp HHHHHHHHTTTTTCCS
T ss_pred HHHHHHHHHHhcCccc
Confidence 3455799999999976
Done!