Query 016397
Match_columns 390
No_of_seqs 216 out of 2425
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:29:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02612 phytoene desaturase 100.0 1.4E-47 2.9E-52 379.4 37.7 386 3-388 179-564 (567)
2 PLN02487 zeta-carotene desatur 100.0 2.3E-43 5E-48 345.2 35.5 367 7-379 163-560 (569)
3 TIGR02732 zeta_caro_desat caro 100.0 8.8E-43 1.9E-47 339.0 35.7 356 8-369 88-474 (474)
4 TIGR02731 phytoene_desat phyto 100.0 3.6E-41 7.9E-46 328.4 36.4 361 6-369 88-453 (453)
5 TIGR03467 HpnE squalene-associ 100.0 8.8E-37 1.9E-41 295.1 34.4 341 8-369 77-418 (419)
6 PRK07233 hypothetical protein; 100.0 2.6E-32 5.7E-37 265.1 32.4 336 22-374 90-433 (434)
7 PLN02576 protoporphyrinogen ox 100.0 1.1E-30 2.3E-35 257.8 25.5 331 21-374 106-489 (496)
8 COG1232 HemY Protoporphyrinoge 100.0 3.8E-31 8.3E-36 249.0 21.1 310 36-369 106-443 (444)
9 TIGR00562 proto_IX_ox protopor 100.0 1.6E-30 3.4E-35 254.5 25.2 324 21-372 100-460 (462)
10 PRK12416 protoporphyrinogen ox 100.0 2.8E-30 6.2E-35 252.5 26.1 320 24-372 111-461 (463)
11 PRK07208 hypothetical protein; 100.0 4.5E-28 9.7E-33 238.1 28.9 332 21-372 96-461 (479)
12 PRK11883 protoporphyrinogen ox 100.0 2.9E-28 6.3E-33 237.9 25.0 311 31-370 112-450 (451)
13 COG3349 Uncharacterized conser 100.0 1.5E-27 3.3E-32 223.5 19.4 365 4-377 88-468 (485)
14 PLN02268 probable polyamine ox 99.9 2.2E-25 4.7E-30 216.4 18.3 282 63-372 130-434 (435)
15 TIGR02733 desat_CrtD C-3',4' d 99.9 3.8E-24 8.3E-29 210.7 25.9 292 64-371 167-491 (492)
16 PLN02676 polyamine oxidase 99.9 3.6E-24 7.9E-29 208.7 21.0 293 63-374 155-475 (487)
17 PLN02568 polyamine oxidase 99.9 3.9E-24 8.5E-29 210.0 20.7 300 66-374 160-537 (539)
18 PLN02529 lysine-specific histo 99.9 7E-23 1.5E-27 205.1 23.1 294 63-375 285-601 (738)
19 TIGR02734 crtI_fam phytoene de 99.9 2.1E-22 4.5E-27 199.0 25.8 290 64-373 159-493 (502)
20 COG1231 Monoamine oxidase [Ami 99.9 1.6E-23 3.5E-28 193.0 16.4 232 125-373 203-448 (450)
21 TIGR02730 carot_isom carotene 99.9 7.2E-22 1.6E-26 194.4 28.3 290 66-372 169-492 (493)
22 PLN03000 amine oxidase 99.9 1.4E-22 3.1E-27 203.5 21.8 239 122-378 372-629 (881)
23 PLN02976 amine oxidase 99.9 2E-22 4.4E-27 207.6 20.9 259 96-373 904-1187(1713)
24 PF01593 Amino_oxidase: Flavin 99.9 8.9E-24 1.9E-28 204.9 10.1 292 63-369 139-450 (450)
25 PLN02328 lysine-specific histo 99.9 5.8E-22 1.3E-26 199.3 22.4 238 122-377 428-684 (808)
26 KOG1276 Protoporphyrinogen oxi 99.9 1.4E-20 3.1E-25 170.7 16.9 290 62-369 151-490 (491)
27 KOG4254 Phytoene desaturase [C 99.8 1.1E-17 2.5E-22 152.6 23.2 237 122-373 255-547 (561)
28 KOG0029 Amine oxidase [Seconda 99.8 3.1E-17 6.7E-22 158.7 20.9 234 124-374 212-461 (501)
29 KOG0685 Flavin-containing amin 99.7 8.9E-17 1.9E-21 148.5 15.9 295 64-375 145-494 (498)
30 COG3380 Predicted NAD/FAD-depe 99.7 1.7E-17 3.7E-22 142.2 5.5 222 128-372 105-331 (331)
31 COG1233 Phytoene dehydrogenase 99.7 1.9E-15 4.1E-20 147.9 19.6 284 64-370 164-481 (487)
32 COG2907 Predicted NAD/FAD-bind 99.4 2.8E-12 6E-17 114.1 15.2 153 61-223 145-304 (447)
33 PTZ00363 rab-GDP dissociation 99.4 2.2E-11 4.8E-16 117.0 17.5 160 22-186 118-286 (443)
34 PRK13977 myosin-cross-reactive 98.8 8.2E-08 1.8E-12 93.8 13.8 141 37-188 138-291 (576)
35 PF00996 GDI: GDP dissociation 98.7 8.9E-07 1.9E-11 84.5 17.5 157 22-185 118-284 (438)
36 TIGR00031 UDP-GALP_mutase UDP- 98.4 2.4E-06 5.2E-11 80.5 11.8 116 67-193 129-250 (377)
37 PF01266 DAO: FAD dependent ox 98.1 1.8E-05 3.9E-10 74.5 10.1 65 123-190 136-203 (358)
38 PF07156 Prenylcys_lyase: Pren 98.1 8.4E-06 1.8E-10 76.5 6.6 118 64-192 67-189 (368)
39 TIGR02352 thiamin_ThiO glycine 97.9 0.00043 9.3E-09 64.8 16.0 67 123-191 126-194 (337)
40 KOG1439 RAB proteins geranylge 97.9 8.2E-05 1.8E-09 68.5 9.6 159 22-185 118-284 (440)
41 TIGR01373 soxB sarcosine oxida 97.7 0.0049 1.1E-07 59.5 19.1 55 134-189 185-239 (407)
42 PRK10015 oxidoreductase; Provi 97.6 0.011 2.3E-07 57.5 20.5 52 136-189 112-163 (429)
43 PRK00711 D-amino acid dehydrog 97.6 0.0031 6.8E-08 61.0 16.9 66 123-190 190-257 (416)
44 PF03486 HI0933_like: HI0933-l 97.5 0.0018 3.8E-08 62.1 12.7 67 123-190 100-166 (409)
45 PF06100 Strep_67kDa_ant: Stre 97.5 0.0015 3.3E-08 62.6 11.9 139 37-188 121-272 (500)
46 PRK06847 hypothetical protein; 97.4 0.0051 1.1E-07 58.6 15.1 55 133-189 108-162 (375)
47 PRK08773 2-octaprenyl-3-methyl 97.4 0.0059 1.3E-07 58.6 15.3 60 133-194 114-174 (392)
48 COG0644 FixC Dehydrogenases (f 97.4 0.016 3.5E-07 55.6 18.0 60 134-194 97-157 (396)
49 TIGR03197 MnmC_Cterm tRNA U-34 97.3 0.0092 2E-07 57.0 15.6 65 123-190 124-190 (381)
50 TIGR01984 UbiH 2-polyprenyl-6- 97.3 0.016 3.5E-07 55.3 16.9 62 132-195 105-168 (382)
51 COG2081 Predicted flavoprotein 97.3 0.00051 1.1E-08 63.8 6.1 67 124-193 103-170 (408)
52 PRK07045 putative monooxygenas 97.3 0.017 3.6E-07 55.4 16.9 61 133-193 107-169 (388)
53 TIGR01988 Ubi-OHases Ubiquinon 97.2 0.019 4.1E-07 54.8 16.8 61 133-195 107-169 (385)
54 PRK07333 2-octaprenyl-6-methox 97.2 0.022 4.7E-07 54.8 17.1 61 133-195 112-173 (403)
55 TIGR03329 Phn_aa_oxid putative 97.2 0.024 5.2E-07 55.6 17.3 53 133-189 184-236 (460)
56 PRK07494 2-octaprenyl-6-methox 97.2 0.013 2.7E-07 56.2 14.6 61 133-195 112-173 (388)
57 TIGR02032 GG-red-SF geranylger 97.1 0.048 1E-06 49.7 17.5 55 133-189 92-147 (295)
58 PRK08020 ubiF 2-octaprenyl-3-m 97.1 0.041 8.9E-07 52.7 17.1 61 133-195 113-175 (391)
59 PRK10157 putative oxidoreducta 97.0 0.016 3.5E-07 56.3 13.5 52 136-189 112-163 (428)
60 COG2509 Uncharacterized FAD-de 97.0 0.0023 4.9E-08 60.4 7.0 55 133-188 174-228 (486)
61 PRK12409 D-amino acid dehydrog 96.9 0.059 1.3E-06 52.0 16.9 56 133-190 198-258 (410)
62 PRK05714 2-octaprenyl-3-methyl 96.9 0.085 1.8E-06 50.8 17.9 62 133-196 113-175 (405)
63 PRK07190 hypothetical protein; 96.9 0.2 4.3E-06 49.6 20.1 60 134-195 111-171 (487)
64 PRK09126 hypothetical protein; 96.8 0.046 9.9E-07 52.4 15.4 60 134-195 112-173 (392)
65 COG0654 UbiH 2-polyprenyl-6-me 96.8 0.063 1.4E-06 51.4 16.1 63 132-196 104-169 (387)
66 COG0579 Predicted dehydrogenas 96.8 0.0042 9.1E-08 59.3 7.7 59 132-191 153-212 (429)
67 PRK08244 hypothetical protein; 96.8 0.14 3.1E-06 50.7 18.5 60 134-195 102-165 (493)
68 TIGR01790 carotene-cycl lycope 96.7 0.46 9.9E-06 45.4 21.4 57 132-190 85-141 (388)
69 PLN02463 lycopene beta cyclase 96.7 0.22 4.8E-06 48.6 19.1 54 133-189 115-168 (447)
70 PRK06834 hypothetical protein; 96.7 0.18 3.9E-06 49.9 18.7 61 133-195 101-162 (488)
71 PRK07588 hypothetical protein; 96.6 0.059 1.3E-06 51.7 14.4 57 134-193 105-162 (391)
72 PRK07608 ubiquinone biosynthes 96.6 0.11 2.3E-06 49.7 16.2 60 133-195 112-173 (388)
73 PRK06185 hypothetical protein; 96.6 0.18 3.8E-06 48.6 17.7 62 133-195 109-175 (407)
74 KOG2820 FAD-dependent oxidored 96.6 0.15 3.3E-06 46.5 15.5 62 135-197 156-218 (399)
75 PF13738 Pyr_redox_3: Pyridine 96.6 0.004 8.7E-08 53.6 5.5 55 133-189 83-137 (203)
76 PF05834 Lycopene_cycl: Lycope 96.6 0.47 1E-05 45.2 20.0 199 132-373 87-289 (374)
77 PRK06184 hypothetical protein; 96.6 0.23 5.1E-06 49.3 18.5 60 134-195 111-174 (502)
78 PRK01747 mnmC bifunctional tRN 96.5 0.11 2.4E-06 53.5 16.4 65 123-190 397-463 (662)
79 TIGR03378 glycerol3P_GlpB glyc 96.5 0.0088 1.9E-07 57.1 7.2 63 132-195 263-327 (419)
80 PRK08850 2-octaprenyl-6-methox 96.4 0.24 5.2E-06 47.7 17.4 60 134-195 113-174 (405)
81 TIGR02485 CobZ_N-term precorri 96.4 0.011 2.3E-07 57.6 7.9 63 125-188 117-181 (432)
82 PRK07364 2-octaprenyl-6-methox 96.4 0.17 3.7E-06 48.8 16.1 61 133-195 122-187 (415)
83 PRK05732 2-octaprenyl-6-methox 96.4 0.27 5.8E-06 47.1 17.3 54 134-189 114-168 (395)
84 PLN02464 glycerol-3-phosphate 96.3 0.52 1.1E-05 48.2 19.5 58 132-189 232-295 (627)
85 PLN02697 lycopene epsilon cycl 96.3 1.4 3.1E-05 43.9 21.7 56 133-190 193-248 (529)
86 PRK06183 mhpA 3-(3-hydroxyphen 96.2 0.58 1.3E-05 47.0 19.2 58 136-195 117-180 (538)
87 TIGR03862 flavo_PP4765 unchara 96.2 0.014 3E-07 55.2 7.0 64 123-190 77-141 (376)
88 COG0665 DadA Glycine/D-amino a 96.2 0.43 9.3E-06 45.5 17.4 64 124-190 146-212 (387)
89 PRK08243 4-hydroxybenzoate 3-m 96.1 0.7 1.5E-05 44.3 18.7 62 133-196 104-170 (392)
90 PRK08849 2-octaprenyl-3-methyl 96.1 0.51 1.1E-05 45.1 17.2 60 134-195 112-173 (384)
91 PF01494 FAD_binding_3: FAD bi 96.1 0.12 2.7E-06 48.2 12.9 63 133-196 112-179 (356)
92 TIGR01989 COQ6 Ubiquinone bios 96.0 0.34 7.3E-06 47.2 16.1 62 133-195 118-189 (437)
93 PRK06996 hypothetical protein; 96.0 0.38 8.2E-06 46.2 16.2 61 133-195 116-181 (398)
94 PRK08013 oxidoreductase; Provi 96.0 0.59 1.3E-05 44.9 17.5 61 133-195 112-174 (400)
95 KOG4405 GDP dissociation inhib 96.0 0.094 2E-06 49.0 10.9 156 22-185 176-340 (547)
96 PRK06617 2-octaprenyl-6-methox 95.9 0.69 1.5E-05 44.0 17.4 60 133-195 105-166 (374)
97 COG5044 MRS6 RAB proteins gera 95.8 0.098 2.1E-06 48.3 10.0 154 21-185 118-279 (434)
98 PTZ00383 malate:quinone oxidor 95.6 0.041 9E-07 54.2 7.7 58 132-191 211-274 (497)
99 PF00890 FAD_binding_2: FAD bi 95.5 0.037 8E-07 53.5 7.1 57 132-189 141-202 (417)
100 PF00070 Pyr_redox: Pyridine n 95.5 0.039 8.4E-07 39.7 5.3 41 132-174 40-80 (80)
101 PRK06126 hypothetical protein; 95.4 2.1 4.6E-05 43.0 19.6 59 135-195 129-194 (545)
102 PRK08132 FAD-dependent oxidore 95.4 2.1 4.6E-05 43.1 19.5 59 136-196 129-192 (547)
103 PRK08294 phenol 2-monooxygenas 95.4 3.6 7.8E-05 42.2 21.2 61 134-195 143-216 (634)
104 TIGR01320 mal_quin_oxido malat 95.3 0.058 1.3E-06 53.2 7.5 67 123-190 167-240 (483)
105 PRK11728 hydroxyglutarate oxid 95.2 0.053 1.2E-06 52.0 7.0 65 123-190 138-204 (393)
106 PRK05868 hypothetical protein; 95.2 2.3 4.9E-05 40.5 17.9 49 145-195 117-166 (372)
107 PRK07121 hypothetical protein; 95.2 0.061 1.3E-06 53.3 7.4 57 132-188 177-237 (492)
108 PRK12835 3-ketosteroid-delta-1 95.1 0.065 1.4E-06 54.2 7.4 57 132-188 213-273 (584)
109 PRK05257 malate:quinone oxidor 95.0 0.082 1.8E-06 52.3 7.8 58 132-190 183-246 (494)
110 PRK05329 anaerobic glycerol-3- 95.0 0.084 1.8E-06 50.9 7.6 56 133-189 260-317 (422)
111 PRK06116 glutathione reductase 95.0 0.081 1.8E-06 51.8 7.6 56 132-188 208-263 (450)
112 TIGR01813 flavo_cyto_c flavocy 94.9 0.07 1.5E-06 52.0 7.0 57 132-188 130-190 (439)
113 PRK12845 3-ketosteroid-delta-1 94.9 0.069 1.5E-06 53.7 7.1 60 126-188 213-276 (564)
114 PRK08274 tricarballylate dehyd 94.9 0.09 2E-06 51.7 7.7 56 132-188 131-190 (466)
115 PRK05675 sdhA succinate dehydr 94.9 0.099 2.1E-06 52.7 8.1 58 132-189 126-188 (570)
116 TIGR00275 flavoprotein, HI0933 94.8 0.077 1.7E-06 51.0 6.9 63 125-190 98-160 (400)
117 TIGR01377 soxA_mon sarcosine o 94.8 0.099 2.1E-06 49.8 7.5 54 133-189 146-199 (380)
118 PRK04176 ribulose-1,5-biphosph 94.7 0.12 2.6E-06 46.4 7.3 58 132-189 104-172 (257)
119 PRK11101 glpA sn-glycerol-3-ph 94.7 0.094 2E-06 52.6 7.4 57 133-190 150-211 (546)
120 PF13454 NAD_binding_9: FAD-NA 94.7 0.11 2.3E-06 42.8 6.4 41 146-188 114-155 (156)
121 TIGR03377 glycerol3P_GlpA glyc 94.5 0.11 2.4E-06 51.8 7.3 58 132-190 128-190 (516)
122 PRK11445 putative oxidoreducta 94.4 4.5 9.6E-05 38.1 19.9 44 144-189 110-156 (351)
123 PRK09078 sdhA succinate dehydr 94.4 0.14 3E-06 52.0 7.9 58 132-189 149-211 (598)
124 TIGR01816 sdhA_forward succina 94.4 0.15 3.2E-06 51.5 8.0 57 132-189 119-180 (565)
125 PRK06134 putative FAD-binding 94.4 0.11 2.3E-06 52.7 7.0 57 132-189 217-277 (581)
126 COG1252 Ndh NADH dehydrogenase 94.3 0.093 2E-06 49.9 6.0 52 131-188 208-260 (405)
127 KOG1336 Monodehydroascorbate/f 94.3 0.099 2.1E-06 49.9 5.9 63 132-194 255-317 (478)
128 PRK13339 malate:quinone oxidor 94.2 0.17 3.6E-06 50.0 7.5 58 132-190 184-247 (497)
129 PRK06481 fumarate reductase fl 94.1 0.15 3.3E-06 50.7 7.3 54 133-187 191-248 (506)
130 PF06039 Mqo: Malate:quinone o 94.1 0.19 4.2E-06 48.1 7.5 61 132-193 181-247 (488)
131 PRK08958 sdhA succinate dehydr 94.1 0.19 4.1E-06 50.9 8.0 58 132-189 143-205 (588)
132 PRK11259 solA N-methyltryptoph 94.1 0.14 3E-06 48.7 6.8 54 134-190 151-204 (376)
133 PRK12843 putative FAD-binding 94.0 0.15 3.2E-06 51.7 7.0 56 132-188 221-280 (578)
134 PRK06175 L-aspartate oxidase; 94.0 0.22 4.7E-06 48.5 8.0 56 132-188 128-187 (433)
135 COG4716 Myosin-crossreactive a 94.0 0.33 7.2E-06 45.1 8.4 118 61-185 158-287 (587)
136 PRK12839 hypothetical protein; 93.9 0.18 3.9E-06 50.9 7.5 57 132-188 214-274 (572)
137 TIGR01811 sdhA_Bsu succinate d 93.9 0.22 4.8E-06 50.6 8.1 57 132-188 129-194 (603)
138 COG0578 GlpA Glycerol-3-phosph 93.8 2.6 5.5E-05 41.7 14.8 67 122-190 153-225 (532)
139 PLN00093 geranylgeranyl diphos 93.8 7.3 0.00016 38.2 20.4 37 336-372 308-347 (450)
140 PRK12844 3-ketosteroid-delta-1 93.8 0.17 3.7E-06 50.9 7.0 56 132-188 208-267 (557)
141 PRK14989 nitrite reductase sub 93.7 0.21 4.5E-06 52.7 7.8 54 135-188 190-243 (847)
142 PRK04965 NADH:flavorubredoxin 93.6 0.19 4.1E-06 47.9 6.8 53 134-188 185-237 (377)
143 PTZ00139 Succinate dehydrogena 93.6 0.27 5.9E-06 50.1 8.1 57 132-188 166-227 (617)
144 PF01134 GIDA: Glucose inhibit 93.6 0.24 5.2E-06 47.0 7.2 53 134-188 97-150 (392)
145 TIGR01423 trypano_reduc trypan 93.5 0.25 5.5E-06 48.8 7.6 56 132-188 231-286 (486)
146 TIGR00292 thiazole biosynthesi 93.5 0.36 7.8E-06 43.3 7.8 57 133-189 101-169 (254)
147 PRK05249 soluble pyridine nucl 93.3 0.23 4.9E-06 48.8 6.9 56 132-189 216-271 (461)
148 TIGR02023 BchP-ChlP geranylger 93.3 7.9 0.00017 37.0 19.8 36 337-372 264-302 (388)
149 TIGR01421 gluta_reduc_1 glutat 93.2 0.31 6.7E-06 47.7 7.7 56 133-189 208-264 (450)
150 PRK07057 sdhA succinate dehydr 93.2 0.37 8E-06 48.9 8.4 58 132-189 148-210 (591)
151 TIGR01424 gluta_reduc_2 glutat 93.2 0.26 5.6E-06 48.2 7.0 54 133-188 208-261 (446)
152 PRK07573 sdhA succinate dehydr 93.2 0.39 8.6E-06 49.1 8.5 52 136-188 174-230 (640)
153 PRK12842 putative succinate de 93.1 0.24 5.3E-06 50.1 7.0 56 132-188 214-273 (574)
154 TIGR02360 pbenz_hydroxyl 4-hyd 93.1 7.7 0.00017 37.1 17.0 63 133-196 104-170 (390)
155 PRK08275 putative oxidoreducta 93.1 0.27 5.9E-06 49.5 7.2 58 132-189 137-199 (554)
156 PRK06263 sdhA succinate dehydr 93.1 0.3 6.4E-06 49.1 7.5 58 132-189 134-196 (543)
157 PRK08205 sdhA succinate dehydr 93.1 0.34 7.3E-06 49.1 7.9 58 132-189 140-205 (583)
158 PLN02507 glutathione reductase 93.0 0.28 6.1E-06 48.7 7.1 55 132-188 244-298 (499)
159 TIGR01812 sdhA_frdA_Gneg succi 92.9 0.39 8.4E-06 48.6 8.0 57 132-189 129-190 (566)
160 PRK07843 3-ketosteroid-delta-1 92.9 0.29 6.2E-06 49.3 7.0 56 132-188 208-267 (557)
161 TIGR02028 ChlP geranylgeranyl 92.8 9.6 0.00021 36.6 20.0 36 337-372 270-308 (398)
162 PRK06416 dihydrolipoamide dehy 92.7 0.3 6.5E-06 47.9 6.9 55 133-189 214-271 (462)
163 PRK05945 sdhA succinate dehydr 92.6 0.47 1E-05 48.0 8.1 57 132-189 135-196 (575)
164 PLN00128 Succinate dehydrogena 92.5 0.44 9.5E-06 48.7 7.8 58 132-189 187-249 (635)
165 PRK07845 flavoprotein disulfid 92.5 0.35 7.6E-06 47.6 6.9 54 133-188 219-272 (466)
166 PRK06452 sdhA succinate dehydr 92.4 0.3 6.5E-06 49.3 6.4 58 132-190 136-198 (566)
167 PRK09754 phenylpropionate diox 92.4 0.42 9.1E-06 45.9 7.3 52 134-188 188-239 (396)
168 TIGR03364 HpnW_proposed FAD de 92.4 0.32 7E-06 46.0 6.4 51 133-190 146-197 (365)
169 TIGR01292 TRX_reduct thioredox 92.3 0.41 9E-06 43.7 6.8 54 133-189 58-111 (300)
170 PRK07804 L-aspartate oxidase; 92.2 0.38 8.3E-06 48.2 6.9 58 132-189 144-209 (541)
171 TIGR02374 nitri_red_nirB nitri 92.2 0.42 9.1E-06 50.2 7.4 52 135-188 185-236 (785)
172 PRK05976 dihydrolipoamide dehy 92.1 0.59 1.3E-05 46.1 8.0 57 133-189 222-280 (472)
173 PRK12266 glpD glycerol-3-phosp 92.1 0.44 9.6E-06 47.4 7.1 57 132-190 155-216 (508)
174 TIGR01350 lipoamide_DH dihydro 91.9 0.47 1E-05 46.5 7.1 54 133-188 212-267 (461)
175 TIGR03140 AhpF alkyl hydropero 91.9 0.46 9.9E-06 47.4 7.0 55 133-189 268-322 (515)
176 PTZ00318 NADH dehydrogenase-li 91.9 0.35 7.6E-06 46.9 6.1 50 133-188 229-278 (424)
177 COG1249 Lpd Pyruvate/2-oxoglut 91.8 0.51 1.1E-05 46.0 7.0 55 132-188 214-270 (454)
178 PRK09897 hypothetical protein; 91.8 0.43 9.4E-06 47.5 6.6 53 134-188 109-164 (534)
179 KOG1346 Programmed cell death 91.7 0.45 9.8E-06 44.8 6.0 67 127-195 384-454 (659)
180 PLN02927 antheraxanthin epoxid 91.6 13 0.00029 38.1 17.0 40 148-189 208-247 (668)
181 PRK15317 alkyl hydroperoxide r 91.6 0.54 1.2E-05 46.9 7.1 56 132-189 266-321 (517)
182 PF04820 Trp_halogenase: Trypt 91.5 0.62 1.3E-05 45.6 7.3 56 133-189 155-210 (454)
183 PRK08163 salicylate hydroxylas 91.5 0.61 1.3E-05 44.7 7.2 55 133-189 110-165 (396)
184 PRK08626 fumarate reductase fl 91.4 0.63 1.4E-05 47.8 7.5 57 132-189 158-219 (657)
185 PRK07395 L-aspartate oxidase; 91.4 0.48 1E-05 47.6 6.6 57 132-188 134-195 (553)
186 PRK07512 L-aspartate oxidase; 91.4 0.36 7.7E-06 48.1 5.6 57 132-189 136-196 (513)
187 PRK13369 glycerol-3-phosphate 91.3 0.65 1.4E-05 46.2 7.3 56 133-190 156-215 (502)
188 PRK08401 L-aspartate oxidase; 91.1 0.63 1.4E-05 45.8 7.0 55 132-189 120-174 (466)
189 TIGR00551 nadB L-aspartate oxi 90.9 0.64 1.4E-05 46.0 6.9 58 132-190 128-189 (488)
190 PRK12837 3-ketosteroid-delta-1 90.9 0.69 1.5E-05 46.1 7.1 56 132-188 173-233 (513)
191 KOG1335 Dihydrolipoamide dehyd 90.8 0.82 1.8E-05 42.7 6.8 61 127-188 247-312 (506)
192 PRK12834 putative FAD-binding 90.7 0.69 1.5E-05 46.5 7.0 56 132-188 148-225 (549)
193 TIGR03385 CoA_CoA_reduc CoA-di 90.7 0.75 1.6E-05 44.7 7.1 53 133-189 180-232 (427)
194 PTZ00058 glutathione reductase 90.6 0.97 2.1E-05 45.5 7.8 55 133-188 279-334 (561)
195 PRK07251 pyridine nucleotide-d 90.4 0.9 2E-05 44.3 7.3 53 133-188 199-251 (438)
196 TIGR03169 Nterm_to_SelD pyridi 90.3 0.67 1.5E-05 43.9 6.2 50 133-188 192-241 (364)
197 PTZ00052 thioredoxin reductase 90.2 0.87 1.9E-05 45.2 7.1 55 133-189 223-277 (499)
198 PRK06327 dihydrolipoamide dehy 90.2 0.83 1.8E-05 45.1 6.9 54 133-188 225-282 (475)
199 TIGR03219 salicylate_mono sali 90.0 0.61 1.3E-05 45.0 5.7 57 134-194 107-164 (414)
200 PRK06370 mercuric reductase; V 90.0 1.1 2.3E-05 44.1 7.5 53 134-188 214-269 (463)
201 TIGR00136 gidA glucose-inhibit 89.8 0.96 2.1E-05 45.5 6.9 56 134-190 98-154 (617)
202 PRK08010 pyridine nucleotide-d 89.8 1.1 2.3E-05 43.8 7.2 53 133-188 200-252 (441)
203 PRK07818 dihydrolipoamide dehy 89.7 1 2.2E-05 44.3 7.2 54 133-188 214-271 (466)
204 PRK07236 hypothetical protein; 89.7 0.74 1.6E-05 44.0 6.0 53 133-189 101-153 (386)
205 PRK14727 putative mercuric red 89.6 0.92 2E-05 44.8 6.7 54 133-189 229-282 (479)
206 PLN02172 flavin-containing mon 89.5 0.8 1.7E-05 44.9 6.1 58 132-191 111-174 (461)
207 KOG2844 Dimethylglycine dehydr 89.4 0.6 1.3E-05 46.7 5.0 92 95-190 148-243 (856)
208 PRK09564 coenzyme A disulfide 89.3 1.3 2.8E-05 43.2 7.5 54 132-188 191-244 (444)
209 PRK06854 adenylylsulfate reduc 89.2 1 2.3E-05 45.8 6.9 57 132-189 132-194 (608)
210 PRK08071 L-aspartate oxidase; 89.0 0.86 1.9E-05 45.4 6.0 55 132-188 130-188 (510)
211 PRK06115 dihydrolipoamide dehy 89.0 1.4 3E-05 43.4 7.5 55 133-189 216-275 (466)
212 PTZ00306 NADH-dependent fumara 88.9 1.2 2.5E-05 49.1 7.4 56 133-188 545-618 (1167)
213 PLN02546 glutathione reductase 88.8 1.5 3.2E-05 44.2 7.5 56 133-189 294-349 (558)
214 PF00732 GMC_oxred_N: GMC oxid 88.8 0.65 1.4E-05 42.5 4.7 58 138-195 199-263 (296)
215 PRK10262 thioredoxin reductase 88.8 1.1 2.3E-05 41.7 6.2 54 134-188 187-246 (321)
216 PLN02985 squalene monooxygenas 88.7 14 0.00029 37.0 14.2 61 133-195 148-214 (514)
217 PRK14694 putative mercuric red 88.6 1.2 2.7E-05 43.8 6.8 54 132-188 218-271 (468)
218 TIGR01438 TGR thioredoxin and 88.6 1.3 2.8E-05 43.8 6.9 55 132-188 220-277 (484)
219 TIGR02053 MerA mercuric reduct 88.5 1.6 3.4E-05 42.9 7.5 54 133-188 208-264 (463)
220 PRK06069 sdhA succinate dehydr 88.4 1.7 3.7E-05 44.0 7.8 57 132-189 137-199 (577)
221 TIGR01316 gltA glutamate synth 88.3 1.8 3.8E-05 42.4 7.6 34 138-171 315-348 (449)
222 PRK13512 coenzyme A disulfide 88.0 1.4 3E-05 43.0 6.7 51 132-188 189-239 (438)
223 TIGR02374 nitri_red_nirB nitri 87.8 0.78 1.7E-05 48.3 5.1 47 139-189 61-107 (785)
224 PRK07846 mycothione reductase; 87.3 1.8 3.8E-05 42.4 6.9 44 144-189 218-261 (451)
225 TIGR01810 betA choline dehydro 87.1 0.91 2E-05 45.5 4.9 50 144-194 206-259 (532)
226 PRK05192 tRNA uridine 5-carbox 87.1 1.7 3.8E-05 43.8 6.7 55 134-190 102-157 (618)
227 PRK07803 sdhA succinate dehydr 87.0 1.6 3.4E-05 44.7 6.6 56 132-188 138-211 (626)
228 PRK13748 putative mercuric red 87.0 1.7 3.7E-05 43.8 6.9 54 132-188 310-363 (561)
229 TIGR02462 pyranose_ox pyranose 86.8 1.6 3.5E-05 43.5 6.4 50 145-194 226-283 (544)
230 COG1251 NirB NAD(P)H-nitrite r 86.7 0.74 1.6E-05 46.6 3.9 50 137-188 192-241 (793)
231 PRK09754 phenylpropionate diox 86.6 1.8 3.8E-05 41.6 6.4 45 141-189 67-111 (396)
232 PRK06753 hypothetical protein; 86.5 1.6 3.6E-05 41.3 6.1 58 134-195 100-158 (373)
233 PLN02815 L-aspartate oxidase 86.4 1.6 3.4E-05 44.3 6.2 57 132-188 155-220 (594)
234 PRK08641 sdhA succinate dehydr 86.4 1.8 3.9E-05 43.9 6.6 58 132-189 133-199 (589)
235 PRK06912 acoL dihydrolipoamide 86.3 2.5 5.4E-05 41.5 7.4 53 133-188 212-266 (458)
236 PRK09077 L-aspartate oxidase; 85.6 2.7 5.8E-05 42.2 7.3 58 132-189 138-206 (536)
237 TIGR03452 mycothione_red mycot 85.3 3 6.5E-05 40.9 7.4 53 134-189 212-264 (452)
238 PRK09231 fumarate reductase fl 85.1 3.2 6.9E-05 42.1 7.7 56 132-188 133-194 (582)
239 TIGR01176 fum_red_Fp fumarate 85.1 3.6 7.8E-05 41.7 8.0 57 132-189 132-194 (580)
240 COG3075 GlpB Anaerobic glycero 84.4 1.7 3.7E-05 39.8 4.7 61 133-194 259-321 (421)
241 TIGR01318 gltD_gamma_fam gluta 84.3 3.7 8E-05 40.4 7.5 38 334-373 429-466 (467)
242 TIGR03169 Nterm_to_SelD pyridi 84.3 1.5 3.2E-05 41.5 4.7 51 134-189 56-106 (364)
243 TIGR02061 aprA adenosine phosp 84.2 3.7 8E-05 41.8 7.6 58 132-189 126-190 (614)
244 PF13434 K_oxygenase: L-lysine 84.1 1.6 3.5E-05 40.9 4.7 60 128-188 269-339 (341)
245 PRK14989 nitrite reductase sub 83.4 2.7 5.8E-05 44.6 6.4 47 139-189 66-112 (847)
246 PRK12831 putative oxidoreducta 83.3 3.7 8E-05 40.4 7.1 38 334-373 424-461 (464)
247 PF12831 FAD_oxidored: FAD dep 83.3 0.36 7.8E-06 46.9 0.0 53 143-196 101-156 (428)
248 PRK06475 salicylate hydroxylas 83.3 4.5 9.8E-05 38.8 7.6 61 133-195 108-173 (400)
249 PRK12769 putative oxidoreducta 82.3 4.5 9.8E-05 41.7 7.6 39 333-373 614-652 (654)
250 COG0492 TrxB Thioredoxin reduc 82.2 3.7 8E-05 37.8 6.2 55 132-190 61-115 (305)
251 COG0446 HcaD Uncharacterized N 82.2 4.4 9.5E-05 38.7 7.1 55 133-188 179-235 (415)
252 KOG2404 Fumarate reductase, fl 82.2 2.1 4.5E-05 39.2 4.3 58 133-191 140-207 (477)
253 PRK12810 gltD glutamate syntha 81.9 4.3 9.3E-05 40.0 6.9 38 334-373 428-465 (471)
254 PRK11749 dihydropyrimidine deh 81.7 5.2 0.00011 39.2 7.4 38 334-373 415-452 (457)
255 PRK12769 putative oxidoreducta 81.7 1.9 4.2E-05 44.4 4.6 14 178-191 412-425 (654)
256 TIGR03140 AhpF alkyl hydropero 81.6 4.6 0.0001 40.3 7.1 50 138-188 393-448 (515)
257 COG1251 NirB NAD(P)H-nitrite r 81.6 2.5 5.4E-05 43.0 5.1 53 133-189 60-112 (793)
258 PRK04965 NADH:flavorubredoxin 81.1 4.8 0.0001 38.3 6.8 45 140-189 66-110 (377)
259 TIGR01316 gltA glutamate synth 81.0 2.1 4.6E-05 41.8 4.4 39 332-372 411-449 (449)
260 TIGR01292 TRX_reduct thioredox 80.5 6.4 0.00014 35.7 7.3 53 134-188 178-236 (300)
261 PRK12831 putative oxidoreducta 80.5 2.3 5.1E-05 41.8 4.5 46 134-189 193-239 (464)
262 PRK12809 putative oxidoreducta 79.9 2.3 5E-05 43.7 4.4 43 332-376 596-638 (639)
263 COG2072 TrkA Predicted flavopr 79.8 6.6 0.00014 38.4 7.3 58 134-191 84-145 (443)
264 PRK12810 gltD glutamate syntha 79.8 2.9 6.2E-05 41.2 4.9 43 136-189 197-239 (471)
265 PRK09564 coenzyme A disulfide 79.4 2.9 6.2E-05 40.8 4.8 49 139-189 63-114 (444)
266 PRK07538 hypothetical protein; 79.1 6.4 0.00014 37.9 7.0 60 134-195 104-171 (413)
267 PF00743 FMO-like: Flavin-bind 79.0 3.6 7.9E-05 41.1 5.4 60 133-193 85-153 (531)
268 PF07992 Pyr_redox_2: Pyridine 78.9 3.7 7.9E-05 34.8 4.8 51 137-188 63-120 (201)
269 TIGR01318 gltD_gamma_fam gluta 78.7 3.3 7.2E-05 40.7 4.9 47 134-191 193-239 (467)
270 PLN02661 Putative thiazole syn 78.1 8.9 0.00019 36.0 7.2 54 133-187 173-241 (357)
271 TIGR01372 soxA sarcosine oxida 78.0 7.1 0.00015 42.4 7.6 54 133-188 352-409 (985)
272 PRK04176 ribulose-1,5-biphosph 77.9 2.6 5.6E-05 37.8 3.6 39 336-374 213-256 (257)
273 PRK02106 choline dehydrogenase 77.2 3.3 7.1E-05 41.8 4.6 50 144-194 213-266 (560)
274 COG2509 Uncharacterized FAD-de 77.1 2.4 5.2E-05 40.6 3.3 40 332-373 445-484 (486)
275 PRK06292 dihydrolipoamide dehy 76.8 9 0.0002 37.5 7.4 54 133-188 211-266 (460)
276 TIGR00292 thiazole biosynthesi 76.2 3 6.6E-05 37.3 3.6 38 336-373 212-254 (254)
277 COG0445 GidA Flavin-dependent 75.9 3 6.4E-05 41.1 3.6 58 136-194 104-162 (621)
278 COG0562 Glf UDP-galactopyranos 75.1 4.4 9.4E-05 37.2 4.2 111 64-194 129-245 (374)
279 PRK06467 dihydrolipoamide dehy 75.0 8 0.00017 38.1 6.5 53 133-188 216-272 (471)
280 KOG1336 Monodehydroascorbate/f 74.6 4.9 0.00011 38.8 4.6 49 136-188 131-179 (478)
281 PRK13984 putative oxidoreducta 74.6 4.3 9.4E-05 41.4 4.7 39 332-373 564-602 (604)
282 PTZ00153 lipoamide dehydrogena 74.4 11 0.00024 38.8 7.4 56 134-189 355-426 (659)
283 COG1635 THI4 Ribulose 1,5-bisp 74.3 14 0.00031 32.1 6.8 63 125-189 104-177 (262)
284 COG1635 THI4 Ribulose 1,5-bisp 73.9 3 6.6E-05 36.1 2.7 38 336-373 218-260 (262)
285 TIGR01317 GOGAT_sm_gam glutama 73.8 4.4 9.6E-05 40.1 4.4 40 332-373 440-479 (485)
286 PRK12770 putative glutamate sy 73.3 5.9 0.00013 37.3 5.0 39 332-372 311-349 (352)
287 PRK12778 putative bifunctional 72.9 9.5 0.00021 40.1 6.8 38 334-373 713-750 (752)
288 PRK12779 putative bifunctional 72.8 4.3 9.3E-05 43.6 4.2 41 332-374 588-628 (944)
289 PRK11749 dihydropyrimidine deh 72.6 5 0.00011 39.3 4.5 45 134-189 192-236 (457)
290 PRK12775 putative trifunctiona 71.8 5.7 0.00012 43.1 4.9 41 332-374 716-756 (1006)
291 TIGR03385 CoA_CoA_reduc CoA-di 71.7 10 0.00022 36.7 6.3 45 142-188 54-101 (427)
292 COG0029 NadB Aspartate oxidase 71.7 9.7 0.00021 37.1 5.9 65 124-188 125-194 (518)
293 PRK12809 putative oxidoreducta 71.5 13 0.00028 38.2 7.3 47 142-188 499-565 (639)
294 PRK12770 putative glutamate sy 71.1 12 0.00026 35.2 6.6 51 136-188 214-284 (352)
295 PRK10262 thioredoxin reductase 70.8 3.3 7.1E-05 38.4 2.6 44 332-376 275-318 (321)
296 KOG0042 Glycerol-3-phosphate d 70.1 33 0.00072 34.0 9.0 72 123-194 214-293 (680)
297 PRK12771 putative glutamate sy 70.0 5.9 0.00013 40.0 4.4 40 332-373 405-444 (564)
298 PRK15317 alkyl hydroperoxide r 70.0 15 0.00032 36.8 7.1 52 136-188 390-447 (517)
299 PRK12778 putative bifunctional 69.8 6.4 0.00014 41.4 4.7 46 134-189 483-528 (752)
300 KOG0404 Thioredoxin reductase 69.7 8.7 0.00019 33.4 4.5 70 124-197 62-131 (322)
301 PTZ00367 squalene epoxidase; P 69.6 1.3E+02 0.0029 30.4 15.3 34 336-369 336-372 (567)
302 PRK12814 putative NADPH-depend 68.2 7.2 0.00016 40.2 4.6 40 332-373 462-501 (652)
303 PLN02661 Putative thiazole syn 67.4 6.3 0.00014 37.0 3.6 39 336-374 286-329 (357)
304 PF01946 Thi4: Thi4 family; PD 66.9 22 0.00048 30.9 6.4 64 124-189 90-164 (230)
305 PRK05335 tRNA (uracil-5-)-meth 66.6 21 0.00046 34.5 7.1 35 335-372 329-363 (436)
306 TIGR03862 flavo_PP4765 unchara 66.2 7.8 0.00017 36.8 4.0 39 334-372 334-375 (376)
307 PRK12775 putative trifunctiona 65.7 17 0.00038 39.5 7.0 49 140-188 617-684 (1006)
308 TIGR01789 lycopene_cycl lycope 65.1 12 0.00026 35.5 5.2 47 134-189 91-137 (370)
309 KOG0405 Pyridine nucleotide-di 64.9 15 0.00032 34.3 5.3 64 130-194 228-292 (478)
310 PRK13512 coenzyme A disulfide 64.6 15 0.00032 35.8 5.8 45 143-189 69-116 (438)
311 PRK06116 glutathione reductase 62.9 11 0.00025 36.7 4.7 38 331-370 290-327 (450)
312 PRK09853 putative selenate red 62.8 10 0.00023 40.8 4.6 40 332-373 803-842 (1019)
313 PRK08274 tricarballylate dehyd 62.5 8.7 0.00019 37.7 3.8 41 333-373 415-462 (466)
314 TIGR03143 AhpF_homolog putativ 62.3 11 0.00025 37.9 4.7 53 133-189 61-113 (555)
315 TIGR01421 gluta_reduc_1 glutat 61.9 12 0.00027 36.5 4.7 37 332-370 291-327 (450)
316 TIGR03315 Se_ygfK putative sel 61.8 9.2 0.0002 41.2 4.0 39 332-372 801-839 (1012)
317 PRK13800 putative oxidoreducta 61.6 24 0.00053 37.9 7.2 57 132-189 139-204 (897)
318 PRK12771 putative glutamate sy 60.6 29 0.00064 35.1 7.3 47 142-189 315-379 (564)
319 PRK13984 putative oxidoreducta 60.5 24 0.00051 36.0 6.7 46 143-189 473-537 (604)
320 PTZ00318 NADH dehydrogenase-li 60.1 17 0.00037 35.2 5.3 40 334-373 306-348 (424)
321 PF13434 K_oxygenase: L-lysine 59.7 12 0.00026 35.1 4.0 43 146-188 109-157 (341)
322 PRK08255 salicylyl-CoA 5-hydro 59.5 2.2E+02 0.0048 30.1 13.7 50 132-195 97-147 (765)
323 TIGR03143 AhpF_homolog putativ 59.3 25 0.00055 35.4 6.5 45 332-377 269-313 (555)
324 PLN02785 Protein HOTHEAD 58.5 23 0.00051 36.0 6.1 38 335-372 541-580 (587)
325 TIGR01424 gluta_reduc_2 glutat 58.5 15 0.00032 35.9 4.6 38 331-370 288-325 (446)
326 TIGR01816 sdhA_forward succina 57.0 14 0.00031 37.3 4.4 39 334-372 351-396 (565)
327 PRK09078 sdhA succinate dehydr 56.9 15 0.00033 37.4 4.5 40 333-372 382-428 (598)
328 PRK12839 hypothetical protein; 56.4 13 0.00027 37.8 3.8 42 332-373 521-569 (572)
329 TIGR01372 soxA sarcosine oxida 56.2 14 0.00031 40.1 4.4 38 334-374 436-473 (985)
330 COG0492 TrxB Thioredoxin reduc 55.6 14 0.00029 34.1 3.6 43 331-374 260-302 (305)
331 PF01134 GIDA: Glucose inhibit 55.4 17 0.00038 34.6 4.3 34 336-372 355-388 (392)
332 PRK06134 putative FAD-binding 55.1 13 0.00028 37.8 3.7 44 332-375 524-574 (581)
333 TIGR00136 gidA glucose-inhibit 55.1 36 0.00078 34.6 6.6 38 331-371 351-389 (617)
334 PF03275 GLF: UDP-galactopyran 55.0 0.36 7.8E-06 41.2 -6.3 90 86-194 2-97 (204)
335 PRK12842 putative succinate de 54.8 16 0.00034 37.1 4.2 40 332-371 520-566 (574)
336 TIGR01423 trypano_reduc trypan 54.4 19 0.00041 35.7 4.6 38 331-370 313-350 (486)
337 PRK12835 3-ketosteroid-delta-1 54.4 16 0.00034 37.2 4.1 45 332-376 523-574 (584)
338 PRK07843 3-ketosteroid-delta-1 54.3 14 0.00031 37.2 3.8 39 332-370 510-555 (557)
339 PLN02507 glutathione reductase 54.0 18 0.0004 35.9 4.5 38 331-370 325-362 (499)
340 COG2081 Predicted flavoprotein 54.0 15 0.00032 34.9 3.5 39 334-372 366-407 (408)
341 PRK12844 3-ketosteroid-delta-1 53.8 16 0.00035 36.8 4.1 40 332-371 503-549 (557)
342 COG1249 Lpd Pyruvate/2-oxoglut 53.7 18 0.0004 35.3 4.3 38 331-370 297-334 (454)
343 PRK12845 3-ketosteroid-delta-1 53.5 15 0.00032 37.2 3.8 38 332-369 518-562 (564)
344 PLN00128 Succinate dehydrogena 53.1 20 0.00043 36.9 4.6 38 334-371 421-465 (635)
345 PRK08205 sdhA succinate dehydr 51.6 20 0.00044 36.4 4.5 40 333-372 372-418 (583)
346 PRK14727 putative mercuric red 51.6 18 0.00039 35.7 4.0 38 331-370 308-345 (479)
347 PRK06292 dihydrolipoamide dehy 51.6 20 0.00043 35.1 4.2 38 331-370 293-330 (460)
348 COG3486 IucD Lysine/ornithine 50.7 25 0.00054 33.5 4.4 59 130-189 269-339 (436)
349 PRK05249 soluble pyridine nucl 49.8 22 0.00047 34.9 4.2 38 331-370 297-334 (461)
350 PRK06452 sdhA succinate dehydr 49.8 27 0.00058 35.4 4.9 41 332-372 355-403 (566)
351 PRK07121 hypothetical protein; 49.7 20 0.00043 35.6 3.9 39 333-371 446-490 (492)
352 TIGR02485 CobZ_N-term precorri 49.6 21 0.00045 34.7 4.0 39 333-371 384-429 (432)
353 PRK06370 mercuric reductase; V 49.4 25 0.00054 34.5 4.6 38 331-370 296-333 (463)
354 PRK14694 putative mercuric red 49.3 22 0.00048 34.9 4.2 38 331-370 297-334 (468)
355 PRK06263 sdhA succinate dehydr 49.2 24 0.00053 35.4 4.6 41 332-372 357-403 (543)
356 PRK13748 putative mercuric red 49.1 21 0.00046 36.0 4.1 38 331-370 390-427 (561)
357 PRK07818 dihydrolipoamide dehy 49.0 24 0.00051 34.7 4.3 38 331-370 298-335 (466)
358 PRK06467 dihydrolipoamide dehy 48.7 22 0.00049 35.0 4.1 38 331-370 299-336 (471)
359 TIGR01812 sdhA_frdA_Gneg succi 48.2 23 0.0005 35.8 4.2 39 334-372 357-402 (566)
360 PTZ00139 Succinate dehydrogena 47.9 23 0.00049 36.3 4.1 39 333-371 399-444 (617)
361 PRK09077 L-aspartate oxidase; 47.7 24 0.00053 35.4 4.3 41 332-372 362-409 (536)
362 PRK12834 putative FAD-binding 47.3 20 0.00044 36.1 3.6 39 332-370 500-548 (549)
363 TIGR00137 gid_trmFO tRNA:m(5)U 47.1 51 0.0011 32.0 6.1 32 335-369 328-359 (433)
364 PRK09231 fumarate reductase fl 46.3 27 0.00059 35.4 4.4 41 332-372 367-414 (582)
365 PRK05945 sdhA succinate dehydr 46.1 29 0.00062 35.3 4.5 40 333-372 367-413 (575)
366 PRK08641 sdhA succinate dehydr 45.8 29 0.00063 35.3 4.5 40 332-371 364-409 (589)
367 TIGR02053 MerA mercuric reduct 45.8 28 0.00061 34.1 4.3 38 331-370 291-328 (463)
368 PLN02852 ferredoxin-NADP+ redu 45.6 23 0.0005 35.1 3.6 41 333-374 383-423 (491)
369 COG2303 BetA Choline dehydroge 45.6 30 0.00066 34.8 4.5 52 142-194 213-270 (542)
370 PRK06327 dihydrolipoamide dehy 45.5 28 0.00061 34.3 4.3 38 331-370 309-346 (475)
371 PRK07845 flavoprotein disulfid 45.4 29 0.00063 34.1 4.3 38 331-370 299-336 (466)
372 PRK08275 putative oxidoreducta 45.3 26 0.00057 35.3 4.1 41 331-372 364-404 (554)
373 PRK08958 sdhA succinate dehydr 44.8 30 0.00065 35.2 4.4 39 334-372 378-423 (588)
374 PRK06416 dihydrolipoamide dehy 44.6 29 0.00063 34.0 4.2 38 331-370 296-333 (462)
375 TIGR00551 nadB L-aspartate oxi 44.5 32 0.0007 34.0 4.5 41 331-371 341-388 (488)
376 PRK05675 sdhA succinate dehydr 44.2 33 0.00072 34.7 4.6 39 334-372 360-405 (570)
377 COG3486 IucD Lysine/ornithine 44.0 31 0.00068 32.9 4.0 41 147-187 112-154 (436)
378 PLN02546 glutathione reductase 43.9 30 0.00065 34.9 4.2 38 331-370 375-412 (558)
379 PRK12837 3-ketosteroid-delta-1 43.8 20 0.00043 35.8 2.9 38 333-370 466-510 (513)
380 PRK06069 sdhA succinate dehydr 43.3 27 0.00059 35.4 3.9 39 334-372 369-414 (577)
381 COG1206 Gid NAD(FAD)-utilizing 43.2 19 0.00042 33.3 2.4 72 287-368 293-367 (439)
382 PRK07803 sdhA succinate dehydr 43.0 29 0.00064 35.6 4.1 39 333-371 402-446 (626)
383 TIGR01438 TGR thioredoxin and 42.9 38 0.00082 33.5 4.7 39 331-370 305-343 (484)
384 TIGR01176 fum_red_Fp fumarate 42.8 33 0.00071 34.9 4.3 42 331-372 365-413 (580)
385 PRK06481 fumarate reductase fl 42.8 27 0.00058 34.8 3.7 39 333-371 458-502 (506)
386 PRK06115 dihydrolipoamide dehy 42.7 31 0.00067 33.9 4.1 38 331-370 300-337 (466)
387 TIGR01350 lipoamide_DH dihydro 42.7 33 0.00072 33.5 4.3 37 332-370 295-331 (461)
388 COG3573 Predicted oxidoreducta 42.4 65 0.0014 30.0 5.6 54 133-187 150-225 (552)
389 KOG1346 Programmed cell death 42.3 33 0.00072 32.8 3.8 40 145-188 270-309 (659)
390 TIGR03452 mycothione_red mycot 42.2 34 0.00074 33.5 4.3 38 331-370 290-327 (452)
391 KOG2415 Electron transfer flav 42.2 32 0.00068 33.0 3.7 55 133-187 184-253 (621)
392 PRK08071 L-aspartate oxidase; 42.1 37 0.00081 33.8 4.5 40 332-371 341-387 (510)
393 PRK12843 putative FAD-binding 42.0 31 0.00068 35.0 4.0 40 332-371 525-571 (578)
394 PRK12779 putative bifunctional 41.4 85 0.0019 34.0 7.3 46 143-188 495-560 (944)
395 PRK07846 mycothione reductase; 41.0 39 0.00084 33.1 4.4 38 331-370 287-324 (451)
396 TIGR01317 GOGAT_sm_gam glutama 40.9 74 0.0016 31.5 6.4 44 145-188 349-412 (485)
397 KOG1399 Flavin-containing mono 40.8 62 0.0014 31.6 5.7 57 133-190 91-153 (448)
398 PRK07512 L-aspartate oxidase; 39.7 44 0.00096 33.3 4.6 41 332-372 350-397 (513)
399 PRK07057 sdhA succinate dehydr 39.1 35 0.00077 34.7 3.9 38 334-371 381-425 (591)
400 PRK05192 tRNA uridine 5-carbox 39.1 77 0.0017 32.3 6.2 66 285-365 317-385 (618)
401 PRK06175 L-aspartate oxidase; 38.9 39 0.00085 32.9 4.1 41 332-372 340-387 (433)
402 PRK09853 putative selenate red 38.6 94 0.002 33.8 7.0 52 135-189 711-778 (1019)
403 PRK05329 anaerobic glycerol-3- 38.4 40 0.00086 32.7 4.0 40 333-372 377-420 (422)
404 PRK06912 acoL dihydrolipoamide 38.4 39 0.00084 33.1 4.0 37 332-370 293-329 (458)
405 KOG1298 Squalene monooxygenase 38.0 1.9E+02 0.004 27.8 7.9 46 132-179 147-195 (509)
406 KOG2614 Kynurenine 3-monooxyge 37.8 1.8E+02 0.004 27.9 8.0 40 147-188 116-161 (420)
407 PF03486 HI0933_like: HI0933-l 37.8 27 0.00058 33.8 2.7 33 334-366 373-408 (409)
408 COG1252 Ndh NADH dehydrogenase 37.6 59 0.0013 31.3 4.9 39 335-373 290-332 (405)
409 TIGR01811 sdhA_Bsu succinate d 36.9 44 0.00095 34.1 4.2 41 331-371 378-424 (603)
410 PF02772 S-AdoMet_synt_M: S-ad 36.3 18 0.0004 28.1 1.0 52 133-189 28-80 (120)
411 PRK06444 prephenate dehydrogen 35.5 54 0.0012 28.1 3.9 41 132-197 10-50 (197)
412 KOG4716 Thioredoxin reductase 35.0 58 0.0013 30.4 4.1 63 126-189 232-299 (503)
413 COG0445 GidA Flavin-dependent 35.0 71 0.0015 31.9 5.0 72 285-370 317-394 (621)
414 PTZ00052 thioredoxin reductase 34.7 54 0.0012 32.6 4.4 37 333-370 304-340 (499)
415 PRK06854 adenylylsulfate reduc 34.0 64 0.0014 33.0 4.8 43 330-372 389-431 (608)
416 PRK13800 putative oxidoreducta 33.6 50 0.0011 35.6 4.2 41 331-372 369-409 (897)
417 PLN02815 L-aspartate oxidase 33.6 61 0.0013 33.1 4.6 41 331-371 385-432 (594)
418 PRK07573 sdhA succinate dehydr 33.6 57 0.0012 33.6 4.4 37 331-367 414-456 (640)
419 PRK05976 dihydrolipoamide dehy 32.5 60 0.0013 31.9 4.3 38 331-370 305-342 (472)
420 PF07156 Prenylcys_lyase: Pren 32.5 66 0.0014 30.6 4.3 35 337-373 315-349 (368)
421 PRK08401 L-aspartate oxidase; 32.3 61 0.0013 31.9 4.3 40 332-371 319-365 (466)
422 PRK08010 pyridine nucleotide-d 31.8 64 0.0014 31.3 4.3 38 331-370 279-316 (441)
423 PTZ00058 glutathione reductase 31.7 68 0.0015 32.4 4.5 40 331-370 360-431 (561)
424 KOG2311 NAD/FAD-utilizing prot 30.7 62 0.0013 31.7 3.7 47 147-194 140-190 (679)
425 PRK12814 putative NADPH-depend 30.7 1.5E+02 0.0031 30.8 6.8 44 144-188 373-435 (652)
426 PRK07804 L-aspartate oxidase; 27.8 80 0.0017 31.8 4.3 41 331-371 365-412 (541)
427 COG4529 Uncharacterized protei 27.7 1E+02 0.0022 30.2 4.7 35 335-369 423-459 (474)
428 COG1053 SdhA Succinate dehydro 27.5 75 0.0016 32.1 4.0 59 132-190 138-202 (562)
429 PRK08626 fumarate reductase fl 27.3 1.1E+02 0.0023 31.8 5.1 40 333-372 382-429 (657)
430 COG0029 NadB Aspartate oxidase 27.1 67 0.0015 31.6 3.4 43 330-372 348-397 (518)
431 PTZ00306 NADH-dependent fumara 27.0 77 0.0017 35.3 4.3 40 333-372 857-902 (1167)
432 TIGR00275 flavoprotein, HI0933 26.9 48 0.0011 31.8 2.5 31 335-365 366-399 (400)
433 KOG3851 Sulfide:quinone oxidor 26.0 33 0.00071 31.7 1.0 64 123-193 82-148 (446)
434 COG0446 HcaD Uncharacterized N 25.5 1.1E+02 0.0024 28.9 4.7 41 144-189 65-105 (415)
435 COG0493 GltD NADPH-dependent g 25.0 62 0.0013 31.8 2.8 38 333-372 413-450 (457)
436 PRK11259 solA N-methyltryptoph 24.6 2.1E+02 0.0045 26.8 6.4 74 279-371 285-360 (376)
437 COG3634 AhpF Alkyl hydroperoxi 24.3 1.2E+02 0.0026 28.6 4.2 66 132-197 266-332 (520)
438 TIGR03378 glycerol3P_GlpB glyc 22.3 77 0.0017 30.7 2.8 35 335-369 381-419 (419)
439 COG1148 HdrA Heterodisulfide r 22.1 1.7E+02 0.0038 28.9 5.0 38 332-372 507-544 (622)
440 PF00743 FMO-like: Flavin-bind 21.8 87 0.0019 31.5 3.2 56 134-197 283-339 (531)
441 TIGR02061 aprA adenosine phosp 21.8 1.1E+02 0.0025 31.3 4.1 39 331-370 401-440 (614)
442 PRK07251 pyridine nucleotide-d 21.8 1.3E+02 0.0028 29.2 4.4 38 331-370 278-315 (438)
443 PTZ00153 lipoamide dehydrogena 21.5 1.3E+02 0.0027 31.2 4.4 33 336-370 462-494 (659)
444 PRK07395 L-aspartate oxidase; 21.3 77 0.0017 32.0 2.8 39 331-369 355-400 (553)
445 PLN02172 flavin-containing mon 21.2 95 0.0021 30.5 3.3 27 169-195 267-293 (461)
446 TIGR03315 Se_ygfK putative sel 21.1 2.6E+02 0.0056 30.6 6.7 52 134-189 708-775 (1012)
447 KOG4716 Thioredoxin reductase 21.0 1E+02 0.0022 28.9 3.1 38 332-370 327-364 (503)
448 TIGR01034 metK S-adenosylmethi 20.8 96 0.0021 29.2 3.0 52 133-189 136-187 (377)
449 PRK06567 putative bifunctional 20.8 2.5E+02 0.0055 30.6 6.3 35 136-171 645-679 (1028)
450 KOG0278 Serine/threonine kinas 20.6 1.3E+02 0.0027 26.9 3.4 28 148-177 180-207 (334)
451 PRK12459 S-adenosylmethionine 20.5 93 0.002 29.4 2.8 52 133-189 143-194 (386)
No 1
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1.4e-47 Score=379.42 Aligned_cols=386 Identities=89% Similarity=1.409 Sum_probs=316.3
Q ss_pred cccCCCCCCcccccCCCCCCCChhhHHHHHcCCCCCCHHHHHHhhhhhHHHHhccccccccccCccHHHHHHHcCCChHH
Q 016397 3 FAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRV 82 (390)
Q Consensus 3 ~~~~~~~g~~~~~~~~~~~~~P~~~~~~ll~~~~~ls~~~k~r~~~~~~~~~~~~~~~~~~~d~~s~~e~l~~~g~~~~~ 82 (390)
+.+++.++.+.++..+...|.|++.+.++++.++.+++.+|++++..+++......+.+..+|++|+.||+++.++++.+
T Consensus 179 ~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~ 258 (567)
T PLN02612 179 FAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRKQGVPDRV 258 (567)
T ss_pred EEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHhcCCCHHH
Confidence 44555567777666553367888888899975578999999998765544322222344568899999999999999999
Q ss_pred HHHHHHHHHHhccCCCcccccHHHHHHHHHHHhcccCCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECC
Q 016397 83 TTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND 162 (390)
Q Consensus 83 ~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~ 162 (390)
.+.+|+|++.++++.+++++|+.+++..+..++...++....++.|+..+.|+++|++.|++.|++|++|++|++|..++
T Consensus 259 ~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~ 338 (567)
T PLN02612 259 NDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELND 338 (567)
T ss_pred HHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECC
Confidence 99999999999988999999999999888877665667778888888556899999999999999999999999999876
Q ss_pred CCCEEEEEEcCCeEEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcCCCccEEEEEEEeCccccccCCceeecCCCcc
Q 016397 163 DGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLL 242 (390)
Q Consensus 163 ~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~ 242 (390)
++++.+|++.+|++++||+||+|+|+..+..|+++.+.+.++.+.++++.+.++++++++|+++++...+++++.+.+..
T Consensus 339 ~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~~~~~~~~~ 418 (567)
T PLN02612 339 DGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLL 418 (567)
T ss_pred CCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCCCceeecCCCCc
Confidence 77665688888988999999999999999999887544446677777888889999999999998755566777666555
Q ss_pred hhhhhcccccccccCCCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeCCceeccC
Q 016397 243 SVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTI 322 (390)
Q Consensus 243 ~~~~~~s~~~~~~a~~g~~ll~~~~~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 322 (390)
+++.+++..+++|++++++++.+++.++++|..++++|+++.++++|+++||....++.....++.+.+.++|.+.|...
T Consensus 419 ~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~ 498 (567)
T PLN02612 419 SVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTV 498 (567)
T ss_pred eeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeC
Confidence 55556665556677777788887777778899999999999999999999997632212235677788889999998888
Q ss_pred CCCCCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 016397 323 PNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLAEASM 388 (390)
Q Consensus 323 ~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~~~~~~~~~~~~~~~ 388 (390)
||....+|..++|++||||||||+.++||++|+||+.||++||++|+++++.+++.+..++++++.
T Consensus 499 pg~~~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~~~~~~~~~~~~~~~ 564 (567)
T PLN02612 499 PNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYELLAARGPRKLSEATV 564 (567)
T ss_pred CCCcccCccccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 887767888899999999999999999999999999999999999999999988888888887763
No 2
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=2.3e-43 Score=345.22 Aligned_cols=367 Identities=32% Similarity=0.563 Sum_probs=282.9
Q ss_pred CCCCCcccccCCCCCCCChhhHHHHHcCCCCCCHHHHHHhhhhh--HHHHhc---c---ccccccccCccHHHHHHHcCC
Q 016397 7 NKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGL--LPAIIG---G---QAYVEAQDGLTVQEWMRKQGV 78 (390)
Q Consensus 7 ~~~g~~~~~~~~~~~~~P~~~~~~ll~~~~~ls~~~k~r~~~~~--~~~~~~---~---~~~~~~~d~~s~~e~l~~~g~ 78 (390)
++.|....+....+++.|++.+..++++ +.|++.+|++++..+ .+.+.. . .+.+..++++|+.+|+++++.
T Consensus 163 ~~~g~~~~~~~~~p~~~pl~~~~~~l~~-~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g 241 (569)
T PLN02487 163 NKGGDVGELDFRFPVGAPLHGIKAFLTT-NQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGG 241 (569)
T ss_pred ecCCEEeeeccCCCCCchhhhHHHHHcC-CCCCHHHHHhhcccccccchhhhccCccccccccccccCCcHHHHHHHhCC
Confidence 3444444443222378899888899999 899999999986443 111111 0 123556889999999999976
Q ss_pred ChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhcccCCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEE
Q 016397 79 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKI 158 (390)
Q Consensus 79 ~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I 158 (390)
+++++++||+|++.+.++++++++|+.+++.+|..+.....+..+.|++||+++.|++++++.|+++|++|+++++|++|
T Consensus 242 ~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I 321 (569)
T PLN02487 242 TRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREI 321 (569)
T ss_pred CHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEE
Confidence 67799999999999988999999999999998865543344567899999984469999999999999999999999999
Q ss_pred EECC--CC--CEEEEEE---cCCeEEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcCCCccEEEEEEEeCccccccC
Q 016397 159 ELND--DG--TVKNFLL---TNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY 231 (390)
Q Consensus 159 ~~~~--~g--~v~~V~~---~~g~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~ 231 (390)
..+. +| ++++|++ .+++++.+|+||+|+|++.+++|+|+.+...+..+.+.++.+.++++|+|+|++++....
T Consensus 322 ~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~ 401 (569)
T PLN02487 322 LYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQ 401 (569)
T ss_pred EEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEEEEecccccccc
Confidence 9863 33 3677887 334578999999999999999999986433455778889999999999999998754211
Q ss_pred --------------CceeecCCCcchhhhhccccccc-c-cCCCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 016397 232 --------------DHLLFSRSSLLSVYADMSLTCKE-Y-YNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPD 295 (390)
Q Consensus 232 --------------~~~~~~~~~~~~~~~~~s~~~~~-~-a~~g~~ll~~~~~~~~~~~~~~~ee~~~~~~~~l~~~~p~ 295 (390)
+++++..+....++.+....+++ | .+..++++++++++++++..++++++++.++++|.+++|.
T Consensus 402 ~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~ 481 (569)
T PLN02487 402 DLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPS 481 (569)
T ss_pred cccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcc
Confidence 11111111111111122111122 2 2233578899888888888999999999999999999998
Q ss_pred CccccccCceEEEEEEEEeCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhhhh
Q 016397 296 EISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 375 (390)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~~ 375 (390)
.. +.++.+..+++.++++|...||+...||..+|+++|||+||||+.++||.+||+|++||.+||+.|++..+.+
T Consensus 482 ~~-----~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~~~~ 556 (569)
T PLN02487 482 SR-----GLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAGEEL 556 (569)
T ss_pred cc-----cCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHhhhh
Confidence 64 2357788899999999999999988889999999999999999999999999999999999999999987666
Q ss_pred hhhc
Q 016397 376 AARG 379 (390)
Q Consensus 376 ~~~~ 379 (390)
.+--
T Consensus 557 ~~~~ 560 (569)
T PLN02487 557 AGLR 560 (569)
T ss_pred hhhh
Confidence 5543
No 3
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=8.8e-43 Score=338.98 Aligned_cols=356 Identities=33% Similarity=0.622 Sum_probs=272.5
Q ss_pred CCCCcccccCCCCCCCChhhHHHHHcCCCCCCHHHHHHhhhhhH--HHHhc---cc---cccccccCccHHHHHHHcCCC
Q 016397 8 KPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLL--PAIIG---GQ---AYVEAQDGLTVQEWMRKQGVP 79 (390)
Q Consensus 8 ~~g~~~~~~~~~~~~~P~~~~~~ll~~~~~ls~~~k~r~~~~~~--~~~~~---~~---~~~~~~d~~s~~e~l~~~g~~ 79 (390)
+.|....+....+.+.|++.+..++++ +.+||.+|++++..+. +.... .. +.+..++++|+.+|+++++.+
T Consensus 88 ~~~~~~~~~~~~~~~~P~~~~~~~l~~-~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~ 166 (474)
T TIGR02732 88 KGGDIGELDFRFATGAPFNGLKAFFTT-SQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFAEWFLSHGGS 166 (474)
T ss_pred CCCcccccccCCCCCCchhhhHHHhcC-CCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHHHHHHHcCCC
Confidence 344444443333478899999899998 8999999999876542 21110 01 234467889999999999777
Q ss_pred hHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhcccCCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEE
Q 016397 80 DRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIE 159 (390)
Q Consensus 80 ~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~ 159 (390)
+.++++||+|++.++++.+++++|+.+++.+++.+.....+..+.+++||+++.+.++|.+.|++.|++|+++++|++|.
T Consensus 167 ~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~ 246 (474)
T TIGR02732 167 LGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIK 246 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEE
Confidence 77899999999999988999999999998877766555566788899998766688889999999999999999999999
Q ss_pred ECC--CCC--EEEEEEcCC---eEEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcCCCccEEEEEEEeCccccccC-
Q 016397 160 LND--DGT--VKNFLLTNG---NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY- 231 (390)
Q Consensus 160 ~~~--~g~--v~~V~~~~g---~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~- 231 (390)
.++ +++ +++|++.+| +++.+|+||+|+|++.+.+|+++.....+..+.+.++.+.++.+|+++|++++....
T Consensus 247 ~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~ 326 (474)
T TIGR02732 247 YEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTELQD 326 (474)
T ss_pred EecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEeccccccccc
Confidence 853 232 666677544 568999999999999999999874322345677888999999999999998654211
Q ss_pred -------------CceeecCCCcchhhhhcccccc-cccCCCC-cEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 016397 232 -------------DHLLFSRSSLLSVYADMSLTCK-EYYNPNQ-SMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDE 296 (390)
Q Consensus 232 -------------~~~~~~~~~~~~~~~~~s~~~~-~~a~~g~-~ll~~~~~~~~~~~~~~~ee~~~~~~~~l~~~~p~~ 296 (390)
+++++..+....++.+.+..++ +|++++. .+++++++.+.++.+++++++++.++++|+++||..
T Consensus 327 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~p~~ 406 (474)
T TIGR02732 327 LAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRVDKQVRALFPSS 406 (474)
T ss_pred hhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHHHHHHHHhCccc
Confidence 1111111111111112222223 3444443 457777776667778999999999999999999975
Q ss_pred ccccccCceEEEEEEEEeCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHH
Q 016397 297 ISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 369 (390)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il 369 (390)
. ..++++..+++.++++|.+.||+...+|..+|+++|||+||||+.++||++||+|++||++||+.|+
T Consensus 407 ~-----~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 407 K-----NLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred c-----CCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 4 3467788899999999999999988889999999999999999999999999999999999999874
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=3.6e-41 Score=328.35 Aligned_cols=361 Identities=73% Similarity=1.201 Sum_probs=278.0
Q ss_pred CCCCCCcccccCCCCCCCChhhHHHHHcCCCCCCHHHHHHhhhhhHHHHhccccccccccCccHHHHHHHcCCChHHHHH
Q 016397 6 PNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTE 85 (390)
Q Consensus 6 ~~~~g~~~~~~~~~~~~~P~~~~~~ll~~~~~ls~~~k~r~~~~~~~~~~~~~~~~~~~d~~s~~e~l~~~g~~~~~~~~ 85 (390)
.+++|...++..+. ++.|++.+.++++..+.+++.+|++++..+........+.+..+|++|+.+|+++.++++.+.+.
T Consensus 88 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~ 166 (453)
T TIGR02731 88 PDKPGTFSRFDFPD-IPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQGVPERVNDE 166 (453)
T ss_pred CCCCcceeeccCCC-CCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHcCCCHHHHHH
Confidence 35566777776665 88899988888865467999999998865543321122334567999999999998899999999
Q ss_pred HHHHHHHhccCCCcccccHHHHHHHHHHHhcccCCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCC
Q 016397 86 VFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGT 165 (390)
Q Consensus 86 ~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~ 165 (390)
+++|++.++++.+++++|+.+++..+..++....+....+..|+..+.++++|++.|++.|++|++|++|++|..+++++
T Consensus 167 ~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~ 246 (453)
T TIGR02731 167 VFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGS 246 (453)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCC
Confidence 99999999988999999999999888776644445455566665446899999999999999999999999998766676
Q ss_pred EEEEEEcCCe-----EEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcCCCccEEEEEEEeCccccccCCceeecCCC
Q 016397 166 VKNFLLTNGN-----VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSS 240 (390)
Q Consensus 166 v~~V~~~~g~-----~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~ 240 (390)
+++|++.+|+ ++.||+||+|+|++.+.+|++.......+.+.+.++++.++.+++++++++++. ..++++.+.+
T Consensus 247 v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~-~~~~~~~~~~ 325 (453)
T TIGR02731 247 VKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTT-VDHLLFSRSP 325 (453)
T ss_pred EEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCC-CCceeeeCCC
Confidence 7678886665 789999999999999999997642223566677778888999999999998764 3345555444
Q ss_pred cchhhhhcccccccccCCCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeCCceec
Q 016397 241 LLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYK 320 (390)
Q Consensus 241 ~~~~~~~~s~~~~~~a~~g~~ll~~~~~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~ 320 (390)
......+.+....++.+++++++++.+...+.+..+++||+++.++++|.+++|..... ....+++++...+.|++.|.
T Consensus 326 ~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~-~~~~~~~~~~~~~~p~a~~~ 404 (453)
T TIGR02731 326 LLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKA-DSPAKILKYKVVKTPRSVYK 404 (453)
T ss_pred cceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCC-CCCceEEEEEEEECCCceec
Confidence 33222233322234455556788876665667778999999999999999999852100 01235677777888999887
Q ss_pred cCCCCCCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHH
Q 016397 321 TIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 369 (390)
Q Consensus 321 ~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il 369 (390)
..||....++..++|++||||||+|++.+||++||||++||++||++|+
T Consensus 405 ~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 405 TTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred cCCCChhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 7788666778888999999999999999999999999999999999873
No 5
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=8.8e-37 Score=295.14 Aligned_cols=341 Identities=28% Similarity=0.418 Sum_probs=252.9
Q ss_pred CCCCcccccCCCCCCCChhhHHHHHcCCCCCCHHHHHHhhhhhHHHHhccccccccccCccHHHHHHHcCCChHHHHHHH
Q 016397 8 KPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVF 87 (390)
Q Consensus 8 ~~g~~~~~~~~~~~~~P~~~~~~ll~~~~~ls~~~k~r~~~~~~~~~~~~~~~~~~~d~~s~~e~l~~~g~~~~~~~~~~ 87 (390)
++|....+.... ++.|++....++++ +.+++.+|.++...+...... ....++++|+.+|++++++++++.+.++
T Consensus 77 ~~~~~~~~~~~~-~~~p~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~l~~~~~~~~~~~~~~ 151 (419)
T TIGR03467 77 PGGRLSRLRLSR-LPAPLHLARGLLRA-PGLSWADKLALARALLALRRT---RFRALDDTTVGDWLQAAGQSERLIERLW 151 (419)
T ss_pred CCCCceeecCCC-CCCCHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHhc---CccccCCCCHHHHHHHcCCCHHHHHHHH
Confidence 344443444443 78898877777777 789999999987655433211 1245789999999999878999999999
Q ss_pred HHHHHhccCCCcccccHHHHHHHHHH-HhcccCCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCE
Q 016397 88 IAMSKALNFINPDELSMQCILIALNR-FLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTV 166 (390)
Q Consensus 88 ~p~~~~~~~~~~~~~Sa~~~~~~l~~-~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v 166 (390)
+|++.++++.+++++|+.+++..+.. +.....+..+.+|+||+++.+.++|++.|++.|++|++|++|++|..++++ +
T Consensus 152 ~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~ 230 (419)
T TIGR03467 152 EPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGG-I 230 (419)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCc-c
Confidence 99999999999999999998887754 332223446889998874444566999998899999999999999986554 4
Q ss_pred EEEEEcCCeEEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcCCCccEEEEEEEeCccccccCCceeecCCCcchhhh
Q 016397 167 KNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYA 246 (390)
Q Consensus 167 ~~V~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (390)
+.+...+|+++.||+||+|+|++++.+|+++. ...+.+.+++|.++.++++.|++++|.......+...+...++
T Consensus 231 ~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~----~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~- 305 (419)
T TIGR03467 231 RALVLSGGETLPADAVVLAVPPRHAASLLPGE----DLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLVGGLAQWLF- 305 (419)
T ss_pred eEEEecCCccccCCEEEEcCCHHHHHHhCCCc----hHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeecCCceeEEE-
Confidence 21222467789999999999999999998752 3445678889999999999999998643222222222221111
Q ss_pred hcccccccccCCCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeCCceeccCCCCC
Q 016397 247 DMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCE 326 (390)
Q Consensus 247 ~~s~~~~~~a~~g~~ll~~~~~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 326 (390)
+.+ . .++...++.+++.....+..++++++++.++++|.+++|... ...+.+..+.+|.++.|.+.+|..
T Consensus 306 ~~~----~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~ 375 (419)
T TIGR03467 306 DRG----Q-LAGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVA-----GAKPLWARVIKEKRATFAATPGLN 375 (419)
T ss_pred ECC----c-CCCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccc-----cCCccceEEEEccCCccccCCccc
Confidence 111 0 111224555555555667788999999999999999998642 124556678888888887778876
Q ss_pred CCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHH
Q 016397 327 PCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 369 (390)
Q Consensus 327 ~~~~~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il 369 (390)
..++...++.+|||||||+++++||++||||+.||.+||++|+
T Consensus 376 ~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 376 RLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred ccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 5667677888999999999999888899999999999999986
No 6
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-32 Score=265.13 Aligned_cols=336 Identities=22% Similarity=0.282 Sum_probs=246.4
Q ss_pred CCChhhHHHHHcCCCCCCHHHHHHhhhhhHHHHhccccccccccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCccc
Q 016397 22 PAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDE 101 (390)
Q Consensus 22 ~~P~~~~~~ll~~~~~ls~~~k~r~~~~~~~~~~~~~~~~~~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~ 101 (390)
.+|+..+..++++ +.+++.+|+++...++... ......+++++|+.+|++++ ++++.++.+++|++..+++.++++
T Consensus 90 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 165 (434)
T PRK07233 90 LYPLGTPLELLRF-PHLSLIDKFRLGLLTLLAR--RIKDWRALDKVPAEEWLRRW-SGEGVYEVFWEPLLESKFGDYADD 165 (434)
T ss_pred EecCCCHHHHHcC-CCCCHHHHHHhHHHHHhhh--hcccccccccccHHHHHHHh-cCHHHHHHHHHHHHhcccCCCccc
Confidence 4455545567766 7889999998765444321 11223457889999999998 789999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc-c--CCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEE
Q 016397 102 LSMQCILIALNRFLQE-K--HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVID 178 (390)
Q Consensus 102 ~Sa~~~~~~l~~~~~~-~--~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ 178 (390)
+|+.+++..+...... . ....+.+|+||+ +.|+++|++.+++.|++|+++++|++|+.++ ++++.+. .+|++++
T Consensus 166 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~-~~~~~~~-~~~~~~~ 242 (434)
T PRK07233 166 VSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGF-ATLIDALAEAIEARGGEIRLGTPVTSVVIDG-GGVTGVE-VDGEEED 242 (434)
T ss_pred cCHHHHHHHHhhhhccccccCCceEeccCCCH-HHHHHHHHHHHHhcCceEEeCCCeeEEEEcC-CceEEEE-eCCceEE
Confidence 9999887665433211 1 123577899997 8999999999999999999999999999864 4454343 5677899
Q ss_pred cCEEEEecChhhHhhhcCcchhccHHHHHhhcCCCccEEEEEEEeCccccccCCceee-cC--CCcchhhhhcccccccc
Q 016397 179 GDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLF-SR--SSLLSVYADMSLTCKEY 255 (390)
Q Consensus 179 ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~-~~--~~~~~~~~~~s~~~~~~ 255 (390)
+|+||+|+|+..+.+++++. +....+.++++.|.+..++++++++++.. ..+.. .+ .++..++ ..+..++..
T Consensus 243 ad~vI~a~p~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~s~~~~~~ 317 (434)
T PRK07233 243 FDAVISTAPPPILARLVPDL--PADVLARLRRIDYQGVVCMVLKLRRPLTD--YYWLNINDPGAPFGGVI-EHTNLVPPE 317 (434)
T ss_pred CCEEEECCCHHHHHhhcCCC--cHHHHhhhcccCccceEEEEEEecCCCCC--CceeeecCCCCCcceEE-EecccCCcc
Confidence 99999999999999998653 33455667788899999999999987653 22222 12 2333322 222233333
Q ss_pred cCCCCcEEEEE-e-cCCCCCCCCCHHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeCCceeccCCCCCCCCCCCC
Q 016397 256 YNPNQSMLELV-F-APAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQR 333 (390)
Q Consensus 256 a~~g~~ll~~~-~-~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~ 333 (390)
.+++++++.+. + .....+..++++++++.++++|.+++|.+. ...++...+.+|+++.+.+.||+...++...
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~-----~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~ 392 (434)
T PRK07233 318 RYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFD-----RDDVRAVRISRAPYAQPIYEPGYLDKIPPYD 392 (434)
T ss_pred ccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCC-----hhheeeEEEEEeccccccccCchhhcCCCcc
Confidence 44555554322 2 222334467899999999999999999653 2357778889999998888888766677778
Q ss_pred CCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 016397 334 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 374 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~ 374 (390)
++++|||||||++...++++|++|+.||++||++|++.+..
T Consensus 393 ~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~~ 433 (434)
T PRK07233 393 TPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRRN 433 (434)
T ss_pred cCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhcC
Confidence 88999999999654444469999999999999999987653
No 7
>PLN02576 protoporphyrinogen oxidase
Probab=99.98 E-value=1.1e-30 Score=257.77 Aligned_cols=331 Identities=18% Similarity=0.238 Sum_probs=233.3
Q ss_pred CCCChhhHHHHHcCCCCCCHHHHHHhhhhhHHHHhccccccccccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcc
Q 016397 21 LPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPD 100 (390)
Q Consensus 21 ~~~P~~~~~~ll~~~~~ls~~~k~r~~~~~~~~~~~~~~~~~~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~ 100 (390)
.++|.+.. ++++. +.+++.+|++++...+... +. ....+++|+.||++++ +++++++++++|++.++|+++++
T Consensus 106 ~~~p~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~ 178 (496)
T PLN02576 106 RPLPSNPI-DLPTF-DLLSAPGKIRAGLGAFGWK-RP---PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPS 178 (496)
T ss_pred EEcCCChH-HhcCc-CcCChhHHHHHhHHHhhcc-CC---CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHH
Confidence 35566654 66666 7899999998875443210 11 1225789999999998 99999999999999999999999
Q ss_pred cccHHHHHHHHHH---------------Hhcc---------------cCCceEEeecCCCCccchHHHHHHHHHcC-cEE
Q 016397 101 ELSMQCILIALNR---------------FLQE---------------KHGSKMAFLDGNPPERLCLPIVEHIQSLG-GEV 149 (390)
Q Consensus 101 ~~Sa~~~~~~l~~---------------~~~~---------------~~~~~~~~~~GG~~~~l~~~l~~~l~~~G-~~I 149 (390)
++|+.+++..+.. +... ..+.....++||+ ++|+++|++.+ + ++|
T Consensus 179 ~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~L~~~la~~l---~~~~i 254 (496)
T PLN02576 179 SLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGL-QTLPDALAKRL---GKDKV 254 (496)
T ss_pred HHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchH-HHHHHHHHHhh---CcCcE
Confidence 9999987654322 1100 0122356679998 89999999877 4 689
Q ss_pred EcCceeeEEEECCCCCEEEEEEc--CC-eEEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcCCCccEEEEEEEeCcc
Q 016397 150 RLNSRVQKIELNDDGTVKNFLLT--NG-NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRK 226 (390)
Q Consensus 150 ~l~~~V~~I~~~~~g~v~~V~~~--~g-~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~ 226 (390)
++|++|++|+.++++.+ .|++. +| ++++||+||+|+|++.+..++++. +.+..+.+.+++|.++.+|++.|+++
T Consensus 255 ~l~~~V~~I~~~~~~~~-~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~--~~~~~~~l~~~~~~~~~~v~l~~~~~ 331 (496)
T PLN02576 255 KLNWKVLSLSKNDDGGY-SLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPK--SPAAADALPEFYYPPVAAVTTSYPKE 331 (496)
T ss_pred EcCCEEEEEEECCCCcE-EEEEecCCCceeEEeCEEEECCCHHHHHHHhccc--CHHHHHHhccCCCCceEEEEEEEchH
Confidence 99999999998655423 24443 45 368999999999999999998753 33466778899999999999999987
Q ss_pred cccc-------CCc--eeecC-C--CcchhhhhcccccccccCCCCcEEEEEec--CCCCCCCCCHHHHHHHHHHHHHHh
Q 016397 227 LKNT-------YDH--LLFSR-S--SLLSVYADMSLTCKEYYNPNQSMLELVFA--PAEEWISCSDSEIIDATMKELAKL 292 (390)
Q Consensus 227 ~~~~-------~~~--~~~~~-~--~~~~~~~~~s~~~~~~a~~g~~ll~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~ 292 (390)
+|.. ... .+..+ . +..++.. .+...++..+++..++...+. ..+.+.+++++++++.++++|.++
T Consensus 332 ~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~-~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~ 410 (496)
T PLN02576 332 AVKRERLIDGPLEGFGQLHPRKQGVKTLGTIY-SSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKL 410 (496)
T ss_pred HcccccccCCCCCceEEEccCCCCCceEEEEe-ecCcCCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHH
Confidence 6631 111 11111 1 1122211 222334445555555554443 235677889999999999999999
Q ss_pred CCCCccccccCceEEEEEEEEeCCceeccCCCCCCCCCCCCC---CC--CCeEEecccccCCCCCchhHHHHHHHHHHHH
Q 016397 293 FPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRS---PV--EGFYLAGDYTKQKYLASMEGAVLSGKLCAQA 367 (390)
Q Consensus 293 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~---~~--~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~ 367 (390)
+|... ...+....+++|+++.|.+.+|+....+.++. +. +|||+||||+.+ .++++|+.||.++|++
T Consensus 411 ~g~~~-----~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~ 482 (496)
T PLN02576 411 LLKPG-----APPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGG---VALGKCVESGYEAADL 482 (496)
T ss_pred hCCCC-----CCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCC---ccHHHHHHHHHHHHHH
Confidence 98532 01234456889999999988887432221111 12 699999999986 6999999999999999
Q ss_pred HHHHhhh
Q 016397 368 IVQDYVL 374 (390)
Q Consensus 368 il~~~~~ 374 (390)
|++.+.+
T Consensus 483 i~~~~~~ 489 (496)
T PLN02576 483 VISYLES 489 (496)
T ss_pred HHHHHhh
Confidence 9988653
No 8
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.98 E-value=3.8e-31 Score=248.96 Aligned_cols=310 Identities=20% Similarity=0.272 Sum_probs=229.6
Q ss_pred CCCCHHHHHHhhhhhHHHHhccccccccccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHh
Q 016397 36 EMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL 115 (390)
Q Consensus 36 ~~ls~~~k~r~~~~~~~~~~~~~~~~~~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~ 115 (390)
|.+...++..+++.+..+.. .+.+...++.|+.+|++++ ||+++++++++|+++++|+++++++|+......+....
T Consensus 106 p~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e 182 (444)
T COG1232 106 PLLLLSSEAGLARALQEFIR--PKSWEPKQDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAE 182 (444)
T ss_pred CCccccchhHHHHHHHhhhc--ccCCCCCCCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhh
Confidence 44544344444433333322 2234567899999999999 99999999999999999999999999995554332211
Q ss_pred -----------ccc------CCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEE
Q 016397 116 -----------QEK------HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVID 178 (390)
Q Consensus 116 -----------~~~------~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ 178 (390)
.+. ....+.+++||+ ++|+++|++.++. +|+++++|++|..+.+++ ++.+.+|++++
T Consensus 183 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~-~~l~~al~~~l~~---~i~~~~~V~~i~~~~~~~--~~~~~~g~~~~ 256 (444)
T COG1232 183 RKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGL-QSLIEALAEKLEA---KIRTGTEVTKIDKKGAGK--TIVDVGGEKIT 256 (444)
T ss_pred hhhcchhhhhhhccCcccccccccccccCccH-HHHHHHHHHHhhh---ceeecceeeEEEEcCCcc--EEEEcCCceEE
Confidence 000 012578889998 9999999999975 399999999999964454 35667888899
Q ss_pred cCEEEEecChhhHhhhcCcchhccHHHHHhhcCCCccEEEEEEEeCcc----ccccCCceeecCCC-cchhhhhcccccc
Q 016397 179 GDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRK----LKNTYDHLLFSRSS-LLSVYADMSLTCK 253 (390)
Q Consensus 179 ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~----~~~~~~~~~~~~~~-~~~~~~~~s~~~~ 253 (390)
||.||+|+|++.+.+++++. .....+.++.+.++.+|.+.++++ +..+++.++..+.+ +.++. .+|...|
T Consensus 257 ~D~VI~t~p~~~l~~ll~~~----~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~-~~S~~~p 331 (444)
T COG1232 257 ADGVISTAPLPELARLLGDE----AVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAIT-FHSNKWP 331 (444)
T ss_pred cceEEEcCCHHHHHHHcCCc----chhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEE-EecccCC
Confidence 99999999999999999872 234567788999999999999886 22222223334445 44443 3455556
Q ss_pred cccCCCCcEEEEEec-CC-CCCCCCCHHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeCCceeccCCCCCC----
Q 016397 254 EYYNPNQSMLELVFA-PA-EEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEP---- 327 (390)
Q Consensus 254 ~~a~~g~~ll~~~~~-~~-~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~---- 327 (390)
...|.|++++.+.++ +. +....++|||+++.++++|.++++... +++++.+.||+.++|++.+|+..
T Consensus 332 ~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~-------~~~~~~v~r~~~~~PqY~vG~~~~~~~ 404 (444)
T COG1232 332 HEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGING-------DPVFVEVTRWKYAMPQYEVGHLDRLEP 404 (444)
T ss_pred CCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCc-------chhheeeeeccccCCccchhHHHHHHH
Confidence 656778888887654 33 334567899999999999999998764 23478899999999999999753
Q ss_pred CCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHH
Q 016397 328 CRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 369 (390)
Q Consensus 328 ~~~~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il 369 (390)
.+..+.+-++||+.+|.|..+ .++++|+.+|..||++|+
T Consensus 405 ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 405 IRAALKGAYPGIKSVGRYGEG---VGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred HHHhhccccCCeEEeccCCCC---CCchHHHHHHHHHHHHhh
Confidence 233444334799999988876 489999999999999886
No 9
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.98 E-value=1.6e-30 Score=254.55 Aligned_cols=324 Identities=18% Similarity=0.267 Sum_probs=238.0
Q ss_pred CCCChhhHHHHHcCCCCCCHHHHHHhhhhhHHHHhccccccccccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcc
Q 016397 21 LPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPD 100 (390)
Q Consensus 21 ~~~P~~~~~~ll~~~~~ls~~~k~r~~~~~~~~~~~~~~~~~~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~ 100 (390)
.++|.+.. .++++ ..+++.+|++++...+ .. . ....++|+.||++++ +++++.+++++|+++++|+.+++
T Consensus 100 ~~~p~~~~-~~~~~-~~~~~~~~~~~~~~~~---~~-~---~~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~ 169 (462)
T TIGR00562 100 MPVPTKIA-PFVKT-GLFSLGGKLRAGMDFI---RP-A---SPGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGDPS 169 (462)
T ss_pred ecCCCChH-HHhcC-CCCCchhhHHhhhhhc---cC-C---CCCCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCCHH
Confidence 46776654 67777 7899999998763111 11 1 124469999999998 99999999999999999999999
Q ss_pred cccHHHHHHHHHHH-----------hcc--------------cCCceEEeecCCCCccchHHHHHHHHHcCcEEEcCcee
Q 016397 101 ELSMQCILIALNRF-----------LQE--------------KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 155 (390)
Q Consensus 101 ~~Sa~~~~~~l~~~-----------~~~--------------~~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V 155 (390)
++|+.+++..+... ... ..+..+..+.||+ ++|+++|++.|. .++|++|++|
T Consensus 170 ~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~~l~--~~~i~~~~~V 246 (462)
T TIGR00562 170 KLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGL-ETLPEEIEKRLK--LTKVYKGTKV 246 (462)
T ss_pred HhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhH-HHHHHHHHHHhc--cCeEEcCCeE
Confidence 99999876543211 000 0112255678998 899999998884 2789999999
Q ss_pred eEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcCCCccEEEEEEEeCccccc-cCCc-
Q 016397 156 QKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKN-TYDH- 233 (390)
Q Consensus 156 ~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~-~~~~- 233 (390)
++|..++++ + .|++.+|++++||+||+|+|++.+..|+++. +.+..+++.+++|.++.++.+.|+++.+. ....
T Consensus 247 ~~I~~~~~~-~-~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~--~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~ 322 (462)
T TIGR00562 247 TKLSHRGSN-Y-TLELDNGVTVETDSVVVTAPHKAAAGLLSEL--SNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGF 322 (462)
T ss_pred EEEEecCCc-E-EEEECCCcEEEcCEEEECCCHHHHHHHhccc--CHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCce
Confidence 999986554 4 3777788889999999999999999998763 34567788899999999999999887653 2222
Q ss_pred -eeecCC---CcchhhhhcccccccccCCCCcEEEEEec--CCCCCCCCCHHHHHHHHHHHHHHhCCCCccccccCceEE
Q 016397 234 -LLFSRS---SLLSVYADMSLTCKEYYNPNQSMLELVFA--PAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIV 307 (390)
Q Consensus 234 -~~~~~~---~~~~~~~~~s~~~~~~a~~g~~ll~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~ 307 (390)
++.... +..+++.+ +...+..+|++.+++.+.+. ...++.+++++++++.++++|.++++... ++.
T Consensus 323 g~l~~~~~~~~~~~~i~~-s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~-------~p~ 394 (462)
T TIGR00562 323 GFLISRSSKFAILGCIFT-SKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNINN-------EPE 394 (462)
T ss_pred EEEccCCCCCceEEEEEE-ccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCCCC-------CCc
Confidence 222222 22333222 22334556666667765554 23456678999999999999999997432 367
Q ss_pred EEEEEEeCCceeccCCCCCCCCC----CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 016397 308 KYHVVKTPRSVYKTIPNCEPCRP----LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 308 ~~~~~~~~~a~~~~~~g~~~~~~----~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~ 372 (390)
...+++|+++.|.+.+|+....+ ....+.+|||+||||..+ .++++|+.||.++|++|++.+
T Consensus 395 ~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g---~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 395 MLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG---VGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred EEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC---CcHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999888643222 223345799999999875 699999999999999998765
No 10
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.97 E-value=2.8e-30 Score=252.48 Aligned_cols=320 Identities=14% Similarity=0.153 Sum_probs=229.3
Q ss_pred ChhhHHHHHcCCCCCCHHHHHHhhhhhHHHHhccccccccccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCccccc
Q 016397 24 PLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELS 103 (390)
Q Consensus 24 P~~~~~~ll~~~~~ls~~~k~r~~~~~~~~~~~~~~~~~~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~S 103 (390)
|.++ ..++++ +.+++.+|++.+...+. .. ....+++|+.+|++++ +++++.+++++|++.++|+++++++|
T Consensus 111 p~~~-~~~~~~-~~~~~~~~~~~~~~~~~----~~--~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls 181 (463)
T PRK12416 111 PMSV-ESLFSS-TLVSTKGKIVALKDFIT----KN--KEFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKLNELT 181 (463)
T ss_pred CCCh-HHhhcC-CcCCHHHHHHhhhhhcc----CC--CCCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCccccc
Confidence 3443 367777 78999999987643331 11 1225789999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHH-----------hc------ccCCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCE
Q 016397 104 MQCILIALNRF-----------LQ------EKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTV 166 (390)
Q Consensus 104 a~~~~~~l~~~-----------~~------~~~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v 166 (390)
+...+..+..+ .. ...+..+.+++||| ++|+++|++.|++ ++|++|++|++|+.++++ +
T Consensus 182 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~-~ 257 (463)
T PRK12416 182 MASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGL-STIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR-Y 257 (463)
T ss_pred HHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCH-HHHHHHHHHhccc--ccEEcCCEEEEEEEcCCE-E
Confidence 87655433111 10 01123467889998 8999999998853 689999999999986554 5
Q ss_pred EEEEEcCCeEEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcCCCccEEEEEEEeCccccc-cCC--ceeecCCC-c-
Q 016397 167 KNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKN-TYD--HLLFSRSS-L- 241 (390)
Q Consensus 167 ~~V~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~-~~~--~~~~~~~~-~- 241 (390)
.|++.+|+++.||+||+|+|++.+.+|+++. +....+.++.+.++.++++.|+++.+. ... +++.++.. .
T Consensus 258 -~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~----~l~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~ 332 (463)
T PRK12416 258 -EISFANHESIQADYVVLAAPHDIAETLLQSN----ELNEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLH 332 (463)
T ss_pred -EEEECCCCEEEeCEEEECCCHHHHHhhcCCc----chhHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCe
Confidence 4777788889999999999999999998652 233456788889999999999976542 111 23333222 1
Q ss_pred -chhhhhcccccccccCCCCcEEEEEec----CCCCCCCCCHHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeCC
Q 016397 242 -LSVYADMSLTCKEYYNPNQSMLELVFA----PAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR 316 (390)
Q Consensus 242 -~~~~~~~s~~~~~~a~~g~~ll~~~~~----~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 316 (390)
.++. ..+...+...+++..++.+++. ..+.+.+++++|+.+.++++|+++++... +++.+.+.+|.+
T Consensus 333 ~~~~~-~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~-------~p~~~~v~~W~~ 404 (463)
T PRK12416 333 CDACT-WTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKG-------EPEVVEVTNWKD 404 (463)
T ss_pred EEEEE-eecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCC-------CceEEEEEEccc
Confidence 1221 1121222223333445554442 23446678999999999999999998532 477889999999
Q ss_pred ceeccCCCCCCC----CCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 016397 317 SVYKTIPNCEPC----RPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 317 a~~~~~~g~~~~----~~~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~ 372 (390)
+.|++.+|+... .+....+.+|||+||+++.+ .+|++|+.||+++|++|++.+
T Consensus 405 a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 405 LMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG---VGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred cCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc---ccHHHHHHHHHHHHHHHHHHh
Confidence 998888775321 12233446899999999887 689999999999999998764
No 11
>PRK07208 hypothetical protein; Provisional
Probab=99.97 E-value=4.5e-28 Score=238.09 Aligned_cols=332 Identities=16% Similarity=0.202 Sum_probs=232.4
Q ss_pred CCCChhhHHHHHcCCCCCCHHHHHHhhhhhHHHHhccccccccccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcc
Q 016397 21 LPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPD 100 (390)
Q Consensus 21 ~~~P~~~~~~ll~~~~~ls~~~k~r~~~~~~~~~~~~~~~~~~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~ 100 (390)
.++|++.. +++ ..+++.++++++...+... . ....+++|+.||+.++ +++++++.+++|++.++|+++++
T Consensus 96 ~~~p~~~~-~~l---~~~~~~~~~~~~~~~~~~~---~--~~~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~ 165 (479)
T PRK07208 96 FDYPLKAF-DAL---KNLGLWRTAKCGASYLKAR---L--RPRKEEDSFEDWVINR-FGRRLYSTFFKGYTEKVWGVPCD 165 (479)
T ss_pred ecCCcchh-HHH---HhCCHhHHHHHHHHHHHHh---c--CCCCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhhCCChH
Confidence 45676643 444 2477778877764333211 0 1123689999999998 99999999999999999999999
Q ss_pred cccHHHHHHHH---------HHHhcc----------c---CCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEE
Q 016397 101 ELSMQCILIAL---------NRFLQE----------K---HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKI 158 (390)
Q Consensus 101 ~~Sa~~~~~~l---------~~~~~~----------~---~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I 158 (390)
++|+.+++..+ +..+.. . ....+.+|+||+ +.|+++|++.+++.|++|++|++|++|
T Consensus 166 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~-~~l~~~L~~~l~~~g~~i~~~~~V~~I 244 (479)
T PRK07208 166 EISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGP-GQLWETAAEKLEALGGKVVLNAKVVGL 244 (479)
T ss_pred HCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCc-chHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 99998765322 111111 0 013577899997 899999999999999999999999999
Q ss_pred EECCCCCEEEEEEc--CCe--EEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcCCCccEEEEEEEeCccccccCCce
Q 016397 159 ELNDDGTVKNFLLT--NGN--VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHL 234 (390)
Q Consensus 159 ~~~~~g~v~~V~~~--~g~--~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~ 234 (390)
..++++++..+... +|+ .+.||+||+|+|+..+..++++. .+....+.+.++++.++.++++.++++..... .+
T Consensus 245 ~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~-~~ 322 (479)
T PRK07208 245 HHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPP-PPPEVRAAAAGLRYRDFITVGLLVKELNLFPD-NW 322 (479)
T ss_pred EEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCC-CCHHHHHHHhCCCcceeEEEEEEecCCCCCCC-ce
Confidence 99765544334432 353 58899999999999888887643 23355566778899999999999998754222 22
Q ss_pred eecCC-C-cchhhhhcccccccccCCCCc-EEEEEe--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCccccccCceEEEE
Q 016397 235 LFSRS-S-LLSVYADMSLTCKEYYNPNQS-MLELVF--APAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKY 309 (390)
Q Consensus 235 ~~~~~-~-~~~~~~~~s~~~~~~a~~g~~-ll~~~~--~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~ 309 (390)
++..+ . .......++..++..+|+|.+ .+.+.+ ...+....++++++++.++++|.++.+ .. ..+++..
T Consensus 323 ~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l~~-~~-----~~~~~~~ 396 (479)
T PRK07208 323 IYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARLGL-IR-----PADVEDG 396 (479)
T ss_pred EEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHcCC-CC-----hhheeEE
Confidence 33211 1 111111122233455667663 333322 233444578999999999999999743 21 2468888
Q ss_pred EEEEeCCceeccCCCCCCCCCC---CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 016397 310 HVVKTPRSVYKTIPNCEPCRPL---QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 310 ~~~~~~~a~~~~~~g~~~~~~~---~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~ 372 (390)
.+.+|+.+.|++.+++....+. ..++.+|||+||++....| .++++|+.||.++|++|++..
T Consensus 397 ~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~-~~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 397 FVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY-NNQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred EEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc-CChhHHHHHHHHHHHHHhcCC
Confidence 9999999999988876432211 3356789999999887766 589999999999999988764
No 12
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.96 E-value=2.9e-28 Score=237.91 Aligned_cols=311 Identities=17% Similarity=0.210 Sum_probs=222.9
Q ss_pred HHcCCCCCCHHHHHHhhhhhHHHHhccccccccccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHH
Q 016397 31 ILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIA 110 (390)
Q Consensus 31 ll~~~~~ls~~~k~r~~~~~~~~~~~~~~~~~~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~ 110 (390)
++.. +.++..+|++..... ........+++|+.||+++. ++++.++.+++|++.++|+.+++++|+..++..
T Consensus 112 ~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 183 (451)
T PRK11883 112 FLFA-GLVSPIGKLRAAADL------RPPRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQ 183 (451)
T ss_pred hhcC-CCCCHHHHHHhhCcc------cCCCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCChHHccHHHhHHH
Confidence 3335 678888888765322 11112346789999999987 999999999999999999999999999876544
Q ss_pred HHHHh----------c-----c--cCCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC
Q 016397 111 LNRFL----------Q-----E--KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN 173 (390)
Q Consensus 111 l~~~~----------~-----~--~~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~ 173 (390)
+..+. . . ..+..+.+++||+ +.|+++|++.+... +|+++++|++|..++++ + .|++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~-~-~v~~~~ 258 (451)
T PRK11883 184 LAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGL-QSLIEALEEKLPAG--TIHKGTPVTKIDKSGDG-Y-EIVLSN 258 (451)
T ss_pred HHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHH-HHHHHHHHHhCcCC--eEEeCCEEEEEEEcCCe-E-EEEECC
Confidence 32111 0 0 1133556789998 89999999887432 89999999999986544 5 477788
Q ss_pred CeEEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcCCCccEEEEEEEeCcccc-cc-CCceeec-CC--Ccchhhhhc
Q 016397 174 GNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLK-NT-YDHLLFS-RS--SLLSVYADM 248 (390)
Q Consensus 174 g~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~-~~-~~~~~~~-~~--~~~~~~~~~ 248 (390)
|+++.||+||+|+|++.+.+++.+. +..+.+++++|.++.++++.|+++++ .. ..++++. +. ++.++.. .
T Consensus 259 g~~~~~d~vI~a~p~~~~~~l~~~~----~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 333 (451)
T PRK11883 259 GGEIEADAVIVAVPHPVLPSLFVAP----PAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTW-T 333 (451)
T ss_pred CCEEEcCEEEECCCHHHHHHhccCh----hHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEe-E
Confidence 8889999999999999999987542 34567788999999999999998852 21 1233333 22 2223321 1
Q ss_pred ccccccccCCCCcEEEEEec-CCC-CCCCCCHHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeCCceeccCCCCC
Q 016397 249 SLTCKEYYNPNQSMLELVFA-PAE-EWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCE 326 (390)
Q Consensus 249 s~~~~~~a~~g~~ll~~~~~-~~~-~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 326 (390)
+...+..+|++..++.+.+. +.+ ...+++++++++.++++|+++++... ++....+.+|.++.+.+.+|+.
T Consensus 334 s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~-------~~~~~~~~rw~~a~p~~~~~~~ 406 (451)
T PRK11883 334 SKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITG-------DPEFTIVQRWKEAMPQYGVGHI 406 (451)
T ss_pred cCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCC-------CceEEEEeecCccCCCCCccHH
Confidence 22334445666666665543 222 23567899999999999999987432 3557788999999888878753
Q ss_pred CC----CCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 327 PC----RPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 327 ~~----~~~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.. ++.... ++|||+||+|+.+ .++++|+.||+++|++|++
T Consensus 407 ~~~~~l~~~l~~-~~~l~~aG~~~~g---~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 407 ERVAELRAGLPH-YPGLYVAGASFEG---VGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred HHHHHHHHhhhh-CCCEEEECcccCC---ccHHHHHHHHHHHHHHHHh
Confidence 21 222333 5799999999874 6899999999999999975
No 13
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=223.50 Aligned_cols=365 Identities=35% Similarity=0.517 Sum_probs=287.6
Q ss_pred ccCCCCCCcccccCCCCCCCChhhHHHHHcCCCCCCHHHHHHhhhhhHHHHhccccccccccCccHHHHHHHcCCChHHH
Q 016397 4 AMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVT 83 (390)
Q Consensus 4 ~~~~~~g~~~~~~~~~~~~~P~~~~~~ll~~~~~ls~~~k~r~~~~~~~~~~~~~~~~~~~d~~s~~e~l~~~g~~~~~~ 83 (390)
.....+|...+|+.+. .|.|++....+++. +.+++++|++++..+..+....++.++++|+.|++|||+++|.+...+
T Consensus 88 ~~~~~~g~~~~~~~~~-~p~p~~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~g~~~~~~ 165 (485)
T COG3349 88 GSGTRPGAIGRFARPD-APQPTNGLKAFLRL-PQLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEKGAREGAY 165 (485)
T ss_pred ccCCCCCcccccccCC-CCCcchhhhhhhhc-cccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHhCCCchhH
Confidence 4457889999999997 89999999999999 899999999998765544221134578899999999999999999999
Q ss_pred HHHHHHHHHhccCCCcccccHHHHHHHHHHHhccc-CCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECC
Q 016397 84 TEVFIAMSKALNFINPDELSMQCILIALNRFLQEK-HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND 162 (390)
Q Consensus 84 ~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~-~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~ 162 (390)
+..|.|.+....+.+++.+|+..++..+..++... ++.....++|+..+.+..++.+++++.|.+++...+|+.|..+.
T Consensus 166 k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~ 245 (485)
T COG3349 166 KAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDG 245 (485)
T ss_pred HHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccc
Confidence 99999999776678999999999988877665323 44455677888889999999999999999999999999999864
Q ss_pred ---CCCEEEEEEcCCe---EEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcCCCccEEEEEEEeCccccccC-----
Q 016397 163 ---DGTVKNFLLTNGN---VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY----- 231 (390)
Q Consensus 163 ---~g~v~~V~~~~g~---~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~----- 231 (390)
+++++++... +. ...++.++.+...+.+..++|..|.+....+.+..++..++.+++++++...+...
T Consensus 246 ~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~ 324 (485)
T COG3349 246 ARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQ 324 (485)
T ss_pred cccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccccccccccccccccceeEEEEeecCccccccccchh
Confidence 3345566665 42 34567788888888888889988875667778888888999999999987543211
Q ss_pred ---CceeecCCCcchhhhhcccccccccCCCC-cEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCCccccccCceEE
Q 016397 232 ---DHLLFSRSSLLSVYADMSLTCKEYYNPNQ-SMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIV 307 (390)
Q Consensus 232 ---~~~~~~~~~~~~~~~~~s~~~~~~a~~g~-~ll~~~~~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~ 307 (390)
.+..+.+.+..+++.+....++.++.++. ..+.....+...|...+++++...+.+++...+|...+ .. .
T Consensus 325 ~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~-----a~-~ 398 (485)
T COG3349 325 FGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAE-----AK-L 398 (485)
T ss_pred hhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCchhc-----cc-c
Confidence 11112333444444454444556665553 44555556677788889999999999999999988653 22 5
Q ss_pred EEEEEEeCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhhhhhh
Q 016397 308 KYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAA 377 (390)
Q Consensus 308 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~~~~ 377 (390)
...+++.+.+.+...||...+||...||++|++++|||+...|.++||+|..||++||+.|++.+...+.
T Consensus 399 ~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~~~~ 468 (485)
T COG3349 399 KSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGHHAP 468 (485)
T ss_pred cccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhhhcCc
Confidence 6667778889999999999999999999999999999999888789999999999999999987765444
No 14
>PLN02268 probable polyamine oxidase
Probab=99.93 E-value=2.2e-25 Score=216.41 Aligned_cols=282 Identities=19% Similarity=0.228 Sum_probs=192.3
Q ss_pred cccCccHHHHHHHcC----------CChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhcccCCceEEeecCCCCc
Q 016397 63 AQDGLTVQEWMRKQG----------VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPE 132 (390)
Q Consensus 63 ~~d~~s~~e~l~~~g----------~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~GG~~~ 132 (390)
..+++|+.+|+++.. +++++++.++.| +.+.++++++++|+..+.. ...+ .|. ..++.+|+ +
T Consensus 130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~--~~~~---~g~-~~~~~~G~-~ 201 (435)
T PLN02268 130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ--EELL---EGG-HGLMVRGY-D 201 (435)
T ss_pred cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC--cccc---CCC-ceeecCCH-H
Confidence 467899999986541 344455555566 4566778999999875311 1111 121 23567887 7
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhhh-cC-cchhccHHHHHhhc
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ-LP-ENWKEMAYFKRLEK 210 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~l-l~-~~~~~~~~~~~~~~ 210 (390)
.|+++|++ +.+|++|++|++|..++++ + .|++.+|+++.||+||+|+|+..++.+ +. ....|....+++++
T Consensus 202 ~l~~~l~~-----~~~i~~~~~V~~i~~~~~~-v-~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~ 274 (435)
T PLN02268 202 PVINTLAK-----GLDIRLNHRVTKIVRRYNG-V-KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISD 274 (435)
T ss_pred HHHHHHhc-----cCceeCCCeeEEEEEcCCc-E-EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHh
Confidence 88888864 5579999999999986555 5 378888888999999999999999753 21 11134445677888
Q ss_pred CCCccEEEEEEEeCccccccCC--ceeecCCCcchhhhhcccccccccCCCCcEEEEEec--CCCCCCCCCHHHHHHHHH
Q 016397 211 LVGVPVINIHIWFDRKLKNTYD--HLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFA--PAEEWISCSDSEIIDATM 286 (390)
Q Consensus 211 l~~~~~~~v~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~a~~g~~ll~~~~~--~~~~~~~~~~ee~~~~~~ 286 (390)
+.|.++.++.+.|++++|.... +.+.... ..+. ..+.. ....+..++.+... .+..+.+++++++++.++
T Consensus 275 ~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~--~~~~-~~~~~---~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~ 348 (435)
T PLN02268 275 LGVGIENKIALHFDSVFWPNVEFLGVVAPTS--YGCS-YFLNL---HKATGHPVLVYMPAGRLARDIEKLSDEAAANFAM 348 (435)
T ss_pred CCccceeEEEEEeCCCCCCCCceeeccCCCC--CCce-EEEec---ccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999985321 1111111 0110 00100 01134455554433 234567889999999999
Q ss_pred HHHHHhCCCCccccccCceEEEEEEEEeCC-----ceec-cCCCCC-CCCCCCCCCCCCeEEecccccCCCCCchhHHHH
Q 016397 287 KELAKLFPDEISADQSKAKIVKYHVVKTPR-----SVYK-TIPNCE-PCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVL 359 (390)
Q Consensus 287 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-----a~~~-~~~g~~-~~~~~~~~~~~~l~~aGd~~~~~~~~~~~gA~~ 359 (390)
++|.+++|... +++.+.+++|.. +.|. ..||+. ...+.+++|+++|||||++++..|+++|+||+.
T Consensus 349 ~~L~~~~~~~~-------~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~ 421 (435)
T PLN02268 349 SQLKKMLPDAT-------EPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYS 421 (435)
T ss_pred HHHHHHcCCCC-------CccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHH
Confidence 99999998532 356677788853 3343 345642 233456778899999999999988899999999
Q ss_pred HHHHHHHHHHHHh
Q 016397 360 SGKLCAQAIVQDY 372 (390)
Q Consensus 360 SG~~aA~~il~~~ 372 (390)
||++||++|++.+
T Consensus 422 sG~raA~~v~~~l 434 (435)
T PLN02268 422 TGVMAAEECRMRL 434 (435)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
No 15
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.93 E-value=3.8e-24 Score=210.69 Aligned_cols=292 Identities=21% Similarity=0.230 Sum_probs=194.3
Q ss_pred ccCccHHHHHHHcC-CChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhcccCCceEEeecCCCCccchHHHHHHH
Q 016397 64 QDGLTVQEWMRKQG-VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHI 142 (390)
Q Consensus 64 ~d~~s~~e~l~~~g-~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l 142 (390)
+...|+.+|+++++ +.++.++.+++..+....+.++++.++.+.+..+... .... ...+++||+ +.|+++|++.+
T Consensus 167 ~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--G~~~~~GG~-~~l~~aL~~~~ 242 (492)
T TIGR02733 167 LSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA-QAPH--GLWHLHGSM-QTLSDRLVEAL 242 (492)
T ss_pred hhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc-ccCC--CceeecCcH-HHHHHHHHHHH
Confidence 45699999999864 5677788888876543334567788877654333221 1111 246799997 89999999999
Q ss_pred HHcCcEEEcCceeeEEEECCCCCEEEEEEcCC-----eEEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcCCCcc-E
Q 016397 143 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVP-V 216 (390)
Q Consensus 143 ~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g-----~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~~~-~ 216 (390)
+++|++|+++++|++|..+ ++++++|.+.+| +++.||+||+|+|+..+.+|+++...+..+.+.++++++.+ .
T Consensus 243 ~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~ 321 (492)
T TIGR02733 243 KRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGA 321 (492)
T ss_pred HhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhcCCCCCce
Confidence 9999999999999999985 444556666554 57899999999999999899875333445566677778775 6
Q ss_pred EEEEEEeCccc-c-ccCCc--eeecCCCcchhhhhcccccccccCCCCcEEEEE-ecCCCCCCCC-------CHHHHHHH
Q 016397 217 INIHIWFDRKL-K-NTYDH--LLFSRSSLLSVYADMSLTCKEYYNPNQSMLELV-FAPAEEWISC-------SDSEIIDA 284 (390)
Q Consensus 217 ~~v~l~~~~~~-~-~~~~~--~~~~~~~~~~~~~~~s~~~~~~a~~g~~ll~~~-~~~~~~~~~~-------~~ee~~~~ 284 (390)
+++++.+++.. . ..... ..+.... .++...+..++..+|+|++.+.+. ..+...|..+ .++++.+.
T Consensus 322 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~~~~ 399 (492)
T TIGR02733 322 FVFYLGVKRAALPVDCPPHLQFLSDHQG--SLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQYTQT 399 (492)
T ss_pred EEEEEeecccccCCCCCcceeeccCCCc--eEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHHHHH
Confidence 68999998742 1 11112 2222211 111111113455688888877544 3333333221 24568888
Q ss_pred HHHHHHHhCCCCccccccCceEEEEEEEEeCC----------c-eeccCC--CCC-CCCCCCCCCCCCeEEecccccCCC
Q 016397 285 TMKELAKLFPDEISADQSKAKIVKYHVVKTPR----------S-VYKTIP--NCE-PCRPLQRSPVEGFYLAGDYTKQKY 350 (390)
Q Consensus 285 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~----------a-~~~~~~--g~~-~~~~~~~~~~~~l~~aGd~~~~~~ 350 (390)
+++.|++.+|++.+ .++. ..+.+|. | .|.... .+. ..++..+++++|||+||+++.++
T Consensus 400 il~~le~~~p~l~~------~i~~-~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG- 471 (492)
T TIGR02733 400 IIERLGHYFDLLEE------NWVH-VELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG- 471 (492)
T ss_pred HHHHHHHHCCCccc------cEEE-EEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC-
Confidence 99999999998753 3333 3333343 1 122111 111 12334478999999999999886
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 016397 351 LASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 351 ~~~~~gA~~SG~~aA~~il~~ 371 (390)
+|+.+++.||+.||++|++.
T Consensus 472 -~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 472 -EGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred -CcHHHHHHHHHHHHHHHhhc
Confidence 69999999999999999863
No 16
>PLN02676 polyamine oxidase
Probab=99.92 E-value=3.6e-24 Score=208.75 Aligned_cols=293 Identities=17% Similarity=0.178 Sum_probs=191.5
Q ss_pred cccCccH--HHHHHHcCCChHHHHHHHHHHHH-hccCCCcccccHHHHHHHHHHHhcccCCceEEee--cCCCCccchHH
Q 016397 63 AQDGLTV--QEWMRKQGVPDRVTTEVFIAMSK-ALNFINPDELSMQCILIALNRFLQEKHGSKMAFL--DGNPPERLCLP 137 (390)
Q Consensus 63 ~~d~~s~--~e~l~~~g~~~~~~~~~~~p~~~-~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~--~GG~~~~l~~~ 137 (390)
..+++|+ .+++.+. +.........+-+.. ..++.+++++|+..+... ..+ . ..+....++ +||+ ++|++.
T Consensus 155 ~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~-~~~-~-~~g~~~~~~~~~~G~-~~l~~~ 229 (487)
T PLN02676 155 KAVDISILTAQRLFGQ-VPKTPLEMVIDYYNYDYEFAEPPRVTSLKNTEPN-PTF-V-DFGEDEYFVADPRGY-ESLVYY 229 (487)
T ss_pred CCCCccHHHHHHHHhh-CCCCHHHHHHHHHhccceeccCccccchhhcCcc-ccc-c-cCCCceEEeecCCCH-HHHHHH
Confidence 4567888 5566654 322122222222222 225678889998765320 111 1 112222233 6887 899999
Q ss_pred HHHHHHHc------CcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhh--h-cCcchhccHHHHHh
Q 016397 138 IVEHIQSL------GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--Q-LPENWKEMAYFKRL 208 (390)
Q Consensus 138 l~~~l~~~------G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~--l-l~~~~~~~~~~~~~ 208 (390)
|++.+.++ +.+|++|++|++|..++++ | .|++.+|++++||+||+|+|+.+++. + +.+ ..|....+++
T Consensus 230 La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~g-V-~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P-~LP~~k~~ai 306 (487)
T PLN02676 230 LAEQFLSTKSGKITDPRLKLNKVVREISYSKNG-V-TVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKP-PLPDWKIEAI 306 (487)
T ss_pred HHhhcccccccccCCCceecCCEeeEEEEcCCc-E-EEEECCCCEEEeCEEEEccChHHhccCceEEeC-CCCHHHHHHH
Confidence 99877432 2579999999999997555 6 48888898899999999999999985 3 222 2344556778
Q ss_pred hcCCCccEEEEEEEeCcccccc-CCc--eeecCC--CcchhhhhcccccccccCCCCcEEEEEec--CCCCCCCCCHHHH
Q 016397 209 EKLVGVPVINIHIWFDRKLKNT-YDH--LLFSRS--SLLSVYADMSLTCKEYYNPNQSMLELVFA--PAEEWISCSDSEI 281 (390)
Q Consensus 209 ~~l~~~~~~~v~l~~~~~~~~~-~~~--~~~~~~--~~~~~~~~~s~~~~~~a~~g~~ll~~~~~--~~~~~~~~~~ee~ 281 (390)
+++.+..+.|+.+.|++++|.. ... ..+.+. ....++... .. .+++..++.+.+. .+..+..+++++.
T Consensus 307 ~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~l~~~~~g~~a~~~~~~s~e~~ 381 (487)
T PLN02676 307 YQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHL---EN--EYPGSNVLFVTVTDEESRRIEQQPDSET 381 (487)
T ss_pred HhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhc---cc--CCCCCCEEEEEechHHHHHHHhCCHHHH
Confidence 8999999999999999999953 211 122211 111111000 00 1223344443332 2345667899999
Q ss_pred HHHHHHHHHHhCCCCccccccCceEEEEEEEEeCC-----ceec-cCCCCCC-CCCCCCCCCCCeEEecccccCCCCCch
Q 016397 282 IDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR-----SVYK-TIPNCEP-CRPLQRSPVEGFYLAGDYTKQKYLASM 354 (390)
Q Consensus 282 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-----a~~~-~~~g~~~-~~~~~~~~~~~l~~aGd~~~~~~~~~~ 354 (390)
.+.++++|+++||... ..++.+..+.|.. |.|. +.||... ..+.++.|+++|||||++++..|+++|
T Consensus 382 ~~~vl~~L~~~~g~~~------~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~ 455 (487)
T PLN02676 382 KAEIMEVLRKMFGPNI------PEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYV 455 (487)
T ss_pred HHHHHHHHHHHhCCCC------CCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccch
Confidence 9999999999997422 1355566666643 4554 3456532 345567788999999999999888999
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 016397 355 EGAVLSGKLCAQAIVQDYVL 374 (390)
Q Consensus 355 ~gA~~SG~~aA~~il~~~~~ 374 (390)
+||+.||++||++|++.+..
T Consensus 456 eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 456 HGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999987643
No 17
>PLN02568 polyamine oxidase
Probab=99.92 E-value=3.9e-24 Score=209.98 Aligned_cols=300 Identities=17% Similarity=0.165 Sum_probs=200.6
Q ss_pred CccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhc-------------ccC------CceEEee
Q 016397 66 GLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ-------------EKH------GSKMAFL 126 (390)
Q Consensus 66 ~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~-------------~~~------~~~~~~~ 126 (390)
+.|+.+|++++ +++ .++.+.+|+..++++.++++.+...++..+..+.. ... ......+
T Consensus 160 ~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i 237 (539)
T PLN02568 160 GGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITI 237 (539)
T ss_pred CCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEE
Confidence 45999999987 655 66777788888888777777777666554433210 000 1124467
Q ss_pred cCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhh-------hcCcch
Q 016397 127 DGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL-------QLPENW 199 (390)
Q Consensus 127 ~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~-------ll~~~~ 199 (390)
.||+ +.|+++|++.|. +.+|++|++|++|..++++ + .|++.+|++++||+||+|+|+.++++ .+.+.
T Consensus 238 ~gG~-~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~-v-~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~- 311 (539)
T PLN02568 238 AKGY-LSVIEALASVLP--PGTIQLGRKVTRIEWQDEP-V-KLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPP- 311 (539)
T ss_pred CCcH-HHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCe-E-EEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCC-
Confidence 8997 899999998884 5689999999999996554 5 48888898899999999999999985 23222
Q ss_pred hccHHHHHhhcCCCccEEEEEEEeCcccccc------CCc--eeecCCCc--c--hhhhhcccccccccC--CCCcEEE-
Q 016397 200 KEMAYFKRLEKLVGVPVINIHIWFDRKLKNT------YDH--LLFSRSSL--L--SVYADMSLTCKEYYN--PNQSMLE- 264 (390)
Q Consensus 200 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~------~~~--~~~~~~~~--~--~~~~~~s~~~~~~a~--~g~~ll~- 264 (390)
.|....++++++.++.+.+|++.|++++|.. +.. +++.+.+. . ........ ...+.+ .+..+|.
T Consensus 312 LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vL~~ 390 (539)
T PLN02568 312 LPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRR-TASICPIHKNSSVLLS 390 (539)
T ss_pred CCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhc-cccccccCCCCCEEEE
Confidence 3445678899999999999999999998731 111 11111110 0 00000000 001111 1334444
Q ss_pred EEec-CCCCCCCCCHHHHHHHHHHHHHHhCCCCccc----------------cccCceEEEEEEEEeC-----CceeccC
Q 016397 265 LVFA-PAEEWISCSDSEIIDATMKELAKLFPDEISA----------------DQSKAKIVKYHVVKTP-----RSVYKTI 322 (390)
Q Consensus 265 ~~~~-~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~----------------~~~~~~~~~~~~~~~~-----~a~~~~~ 322 (390)
+..+ .+..+..++++++++.+++.|.++||..... ......++.+.+++|. +|.|.+.
T Consensus 391 ~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~ 470 (539)
T PLN02568 391 WFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYV 470 (539)
T ss_pred EeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCC
Confidence 4333 3456778999999999999999999743100 0011246677777774 2556543
Q ss_pred -CCCCC-CCCCCCCCC-------------CCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 016397 323 -PNCEP-CRPLQRSPV-------------EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 374 (390)
Q Consensus 323 -~g~~~-~~~~~~~~~-------------~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~ 374 (390)
||... .+..++.|+ .+|||||++|+..|+++|+||+.||+++|++|++.++.
T Consensus 471 ~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~~ 537 (539)
T PLN02568 471 AVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYKC 537 (539)
T ss_pred cCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhcc
Confidence 56532 223334444 37999999999999999999999999999999998754
No 18
>PLN02529 lysine-specific histone demethylase 1
Probab=99.91 E-value=7e-23 Score=205.09 Aligned_cols=294 Identities=15% Similarity=0.156 Sum_probs=184.2
Q ss_pred cccCccHHHHHHHcC------CChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhcccCCceEEeecCCCCccchH
Q 016397 63 AQDGLTVQEWMRKQG------VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCL 136 (390)
Q Consensus 63 ~~d~~s~~e~l~~~g------~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~GG~~~~l~~ 136 (390)
..+++|+.+|+++.. ++++. +.+++-.+..+.+..+.++|...+......... ..+.....+.||+ ++|++
T Consensus 285 ~~~d~Sl~~~le~~~~~~~~~~t~~e-~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~-e~~G~~~~i~GG~-~~Li~ 361 (738)
T PLN02529 285 FANDISLGSVLERLRQLYGVARSTEE-RQLLDWHLANLEYANAGCLSDLSAAYWDQDDPY-EMGGDHCFLAGGN-WRLIN 361 (738)
T ss_pred CccCCCHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHhceecCCChHHhhhhHhhhcccc-ccCCceEEECCcH-HHHHH
Confidence 467899999998642 33333 345555443333333333333322221111000 1122456678997 89999
Q ss_pred HHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhhh---cCcchhccHHHHHhhcCCC
Q 016397 137 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ---LPENWKEMAYFKRLEKLVG 213 (390)
Q Consensus 137 ~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~l---l~~~~~~~~~~~~~~~l~~ 213 (390)
+|++. ..|++|++|++|..++++ | .|++ +++++.||+||+|+|+.++++. +.+. .|....++++++.|
T Consensus 362 aLA~~-----L~IrLnt~V~~I~~~~dG-V-tV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~Pp-LP~~K~~AI~rL~y 432 (738)
T PLN02529 362 ALCEG-----VPIFYGKTVDTIKYGNDG-V-EVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPE-LPRRKLAAIDRLGF 432 (738)
T ss_pred HHHhc-----CCEEcCCceeEEEEcCCe-E-EEEE-CCEEEEcCEEEECCCHHHHHhccccCCCC-CCHHHHHHHHcCCC
Confidence 98864 369999999999997655 5 3654 4567999999999999999843 2222 24456778999999
Q ss_pred ccEEEEEEEeCcccccc-CCce--eecCCCcchhhh-hcccccccccCCCCcE-EEEEec-CCCCCCCCCHHHHHHHHHH
Q 016397 214 VPVINIHIWFDRKLKNT-YDHL--LFSRSSLLSVYA-DMSLTCKEYYNPNQSM-LELVFA-PAEEWISCSDSEIIDATMK 287 (390)
Q Consensus 214 ~~~~~v~l~~~~~~~~~-~~~~--~~~~~~~~~~~~-~~s~~~~~~a~~g~~l-l~~~~~-~~~~~~~~~~ee~~~~~~~ 287 (390)
.++.+|++.|++++|.. .+.+ +.......+.+. ..+ . ..+.+..+ +.++.. .+..+..++++++++.+++
T Consensus 433 G~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~---~-~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~ 508 (738)
T PLN02529 433 GLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYG---Y-HTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLS 508 (738)
T ss_pred ceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEec---C-CCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHH
Confidence 99999999999999852 1211 111110001100 000 0 01122344 434333 3455677899999999999
Q ss_pred HHHHhCCCCccccccCceEEEEEEEEeCC-----ceecc-CCCCCC-CCCCCCCC-CCCeEEecccccCCCCCchhHHHH
Q 016397 288 ELAKLFPDEISADQSKAKIVKYHVVKTPR-----SVYKT-IPNCEP-CRPLQRSP-VEGFYLAGDYTKQKYLASMEGAVL 359 (390)
Q Consensus 288 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-----a~~~~-~~g~~~-~~~~~~~~-~~~l~~aGd~~~~~~~~~~~gA~~ 359 (390)
+|.++|+.... ...+++.+.+++|.. +.|.+ .++... ....+..| .++|||||++|+..|+++|+||+.
T Consensus 509 ~L~~ifgp~~~---~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~ 585 (738)
T PLN02529 509 VLRGIYNPKGI---NVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFL 585 (738)
T ss_pred HHHHHhCcccc---ccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHH
Confidence 99999963110 011356667777754 44443 233211 11223344 378999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 016397 360 SGKLCAQAIVQDYVLL 375 (390)
Q Consensus 360 SG~~aA~~il~~~~~~ 375 (390)
||.+||++|++.+...
T Consensus 586 SG~RAA~eIl~~l~~~ 601 (738)
T PLN02529 586 SGLREASRILHVARSQ 601 (738)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999887653
No 19
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.91 E-value=2.1e-22 Score=198.97 Aligned_cols=290 Identities=20% Similarity=0.207 Sum_probs=193.0
Q ss_pred ccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhcccCCceEEeecCCCCccchHHHHHHHH
Q 016397 64 QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQ 143 (390)
Q Consensus 64 ~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~ 143 (390)
....|+.+|++++ +.++.++.++.. ...+++.++++.++.+.+.....+ . ..+.++.||+ +.++++|++.++
T Consensus 159 ~~~~s~~~~~~~~-~~~~~l~~~l~~-~~~~~g~~p~~~~~~~~l~~~~~~---~--~g~~~~~gG~-~~l~~al~~~~~ 230 (502)
T TIGR02734 159 LAWRSLYSKVARF-FSDERLRQAFSF-HALFLGGNPFRTPSIYALISALER---E--WGVWFPRGGT-GALVAAMAKLAE 230 (502)
T ss_pred cCcCCHHHHHHhh-cCCHHHHHHhcc-cceeeccCcccchHHHHHHHHHHh---h--ceEEEcCCCH-HHHHHHHHHHHH
Confidence 4678999999998 888888878763 233456778888876554322221 1 1356899997 899999999999
Q ss_pred HcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhH-hhhcCcchhccHHHHHhhcCCCc-cEEEEEE
Q 016397 144 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL-KLQLPENWKEMAYFKRLEKLVGV-PVINIHI 221 (390)
Q Consensus 144 ~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~-~~ll~~~~~~~~~~~~~~~l~~~-~~~~v~l 221 (390)
++|++|+++++|++|..+ ++++++|++.+|++++||.||+|+++..+ ..|++....+....+.+++++++ +.+++++
T Consensus 231 ~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~l 309 (502)
T TIGR02734 231 DLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYF 309 (502)
T ss_pred HCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEEE
Confidence 999999999999999985 45566788888888999999999998544 46666543222233445556654 6888999
Q ss_pred EeC---ccccc-cCCceeecCC-----------------CcchhhhhcccccccccCCCCcEEEEEe-cCCC-----CCC
Q 016397 222 WFD---RKLKN-TYDHLLFSRS-----------------SLLSVYADMSLTCKEYYNPNQSMLELVF-APAE-----EWI 274 (390)
Q Consensus 222 ~~~---~~~~~-~~~~~~~~~~-----------------~~~~~~~~~s~~~~~~a~~g~~ll~~~~-~~~~-----~~~ 274 (390)
.++ +++.. ...++++..+ +...+ ...|..++..+|+|++.+.+.. .+.+ .|.
T Consensus 310 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v-~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~ 388 (502)
T TIGR02734 310 GLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYL-HRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWS 388 (502)
T ss_pred eeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEE-EcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcH
Confidence 998 34321 1122222111 11000 0123345677898888766433 2321 232
Q ss_pred CCCHHHHHHHHHHHHHHh-CCCCccccccCceEEEEEEEEeCC----------c-eeccCC--CC-CCCCCC-CCCCCCC
Q 016397 275 SCSDSEIIDATMKELAKL-FPDEISADQSKAKIVKYHVVKTPR----------S-VYKTIP--NC-EPCRPL-QRSPVEG 338 (390)
Q Consensus 275 ~~~~ee~~~~~~~~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~----------a-~~~~~~--g~-~~~~~~-~~~~~~~ 338 (390)
. .++++.+.+++.|++. +|++.+ .++.. .+.+|. | .|...+ .+ ...+|. ..++++|
T Consensus 389 ~-~k~~~~~~il~~l~~~~~p~l~~------~i~~~-~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~g 460 (502)
T TIGR02734 389 V-EGPRYRDRILAYLEERAIPGLRD------RIVVE-RTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDN 460 (502)
T ss_pred H-HHHHHHHHHHHHHHHhcCCChhH------heEEE-EEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCC
Confidence 2 3567899999999998 998752 33333 333332 1 122211 11 124453 3678999
Q ss_pred eEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 339 FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 339 l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
||+||+++.++ +|+.+++.||+.||++|+++++
T Consensus 461 Lyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~~~ 493 (502)
T TIGR02734 461 LYLVGAGTHPG--AGVPGVLGSAKATAKLMLGDLA 493 (502)
T ss_pred EEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999876 6999999999999999998743
No 20
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.91 E-value=1.6e-23 Score=192.96 Aligned_cols=232 Identities=19% Similarity=0.175 Sum_probs=170.0
Q ss_pred eecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhhh-cCcchhccH
Q 016397 125 FLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ-LPENWKEMA 203 (390)
Q Consensus 125 ~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~l-l~~~~~~~~ 203 (390)
.+.||| ++|++++++.| |..|+++++|.+|.++++| |+ |++.+.+++.+|.||||+|+.++.++ +.+ ..+.+
T Consensus 203 ~~~GGm-d~la~Afa~ql---~~~I~~~~~V~rI~q~~~g-V~-Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P-~l~~~ 275 (450)
T COG1231 203 QRLGGM-DQLAEAFAKQL---GTRILLNEPVRRIDQDGDG-VT-VTADDVGQYVADYVLVTIPLAILGQIDFAP-LLPAE 275 (450)
T ss_pred ccCccH-HHHHHHHHHHh---hceEEecCceeeEEEcCCe-EE-EEeCCcceEEecEEEEecCHHHHhhcccCC-CCCHH
Confidence 445998 99999999877 6899999999999998666 63 78777457999999999999999888 333 34567
Q ss_pred HHHHhhcCCCccEEEEEEEeCccccc--c-CCceeecCCCcchhhhhcccccccccCCCCcE-EEE-Eec-CCCCCCCCC
Q 016397 204 YFKRLEKLVGVPVINIHIWFDRKLKN--T-YDHLLFSRSSLLSVYADMSLTCKEYYNPNQSM-LEL-VFA-PAEEWISCS 277 (390)
Q Consensus 204 ~~~~~~~l~~~~~~~v~l~~~~~~~~--~-~~~~~~~~~~~~~~~~~~s~~~~~~a~~g~~l-l~~-~~~-~~~~~~~~~ 277 (390)
+.+++..+.|.+..++.+.|+++||+ + +++..+.+.++.-+. ..+ ..+ ..|..+ +.. .+. .+..|..++
T Consensus 276 ~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~-~~s---~~~-~~G~gVl~g~~~~g~~A~~~~~~~ 350 (450)
T COG1231 276 YKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGLGFIS-YPS---APF-ADGPGVLLGSYAFGDDALVIDALP 350 (450)
T ss_pred HHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCCcceEe-cCc---ccc-CCCceEEEeeeeccccceeEecCC
Confidence 78888889999999999999999995 4 556777766522111 111 111 133444 332 223 456788999
Q ss_pred HHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeCC-----ceec-cCCCCC-CCCCCCCCCCCCeEEecccccCCC
Q 016397 278 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR-----SVYK-TIPNCE-PCRPLQRSPVEGFYLAGDYTKQKY 350 (390)
Q Consensus 278 ~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-----a~~~-~~~g~~-~~~~~~~~~~~~l~~aGd~~~~~~ 350 (390)
+++..+.++..+.++||+.... .+......+|.. +.+. +.+|+. ++.+.+..|.++|||||....+.|
T Consensus 351 ~~~r~~~vl~~l~~~~g~~a~~-----~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~ 425 (450)
T COG1231 351 EAERRQKVLARLAKLFGDEAAD-----PFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEF 425 (450)
T ss_pred HHHHHHHHHHhHhhhCChhhcc-----ccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccc
Confidence 9999999999999999964321 122224455543 4222 345653 355677788899999996666678
Q ss_pred CCchhHHHHHHHHHHHHHHHHhh
Q 016397 351 LASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 351 ~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
+++++||++||++||.+|...+.
T Consensus 426 ~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 426 GGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred cchhHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999987654
No 21
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.91 E-value=7.2e-22 Score=194.37 Aligned_cols=290 Identities=19% Similarity=0.280 Sum_probs=193.0
Q ss_pred CccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhcccCCceEEeecCCCCccchHHHHHHHHHc
Q 016397 66 GLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSL 145 (390)
Q Consensus 66 ~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~ 145 (390)
..|+.++++++ +.++.++.++...+......++.+.++......+... .. ..+.++.||+ +.++++|++.++++
T Consensus 169 ~~s~~~~~~~~-~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~---~~-~g~~~~~gG~-~~l~~~L~~~~~~~ 242 (493)
T TIGR02730 169 PQNAGDIARRY-IRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDR---HY-GGINYPKGGV-GQIAESLVKGLEKH 242 (493)
T ss_pred hccHHHHHHHh-cCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhccc---cc-ceEecCCChH-HHHHHHHHHHHHHC
Confidence 48999999998 7888888888765543322345677766554433211 11 2457899997 89999999999999
Q ss_pred CcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh-hhHhhhcCcchhccHHHHHhhcCCCc-cEEEEEEEe
Q 016397 146 GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV-DILKLQLPENWKEMAYFKRLEKLVGV-PVINIHIWF 223 (390)
Q Consensus 146 G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~-~~~~~ll~~~~~~~~~~~~~~~l~~~-~~~~v~l~~ 223 (390)
|++|+++++|++|..+ ++++.+|++.+|++++||.||+++++ .++.+|+++...+..+...+++++++ +.+++++.+
T Consensus 243 G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l 321 (493)
T TIGR02730 243 GGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGV 321 (493)
T ss_pred CCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCceEEEEEEe
Confidence 9999999999999985 46677899988988999999998765 56667887643333333344555555 688999999
Q ss_pred Cccccc---cCCceeecC-------CCcchhhhhcccccccccCCCCcEEEEEec-CCCCCCCC-------CHHHHHHHH
Q 016397 224 DRKLKN---TYDHLLFSR-------SSLLSVYADMSLTCKEYYNPNQSMLELVFA-PAEEWISC-------SDSEIIDAT 285 (390)
Q Consensus 224 ~~~~~~---~~~~~~~~~-------~~~~~~~~~~s~~~~~~a~~g~~ll~~~~~-~~~~~~~~-------~~ee~~~~~ 285 (390)
++...+ ...++++.+ .+...+ ...+..+++.+|+|++++.+... +...|.+. .++++.+.+
T Consensus 322 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v-~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~i 400 (493)
T TIGR02730 322 KADVLPPGTECHHILLEDWTNLEKPQGTIFV-SIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADAERI 400 (493)
T ss_pred cCccCCCCCCccEEecchhhccCCCCCeEEE-EeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHHHHH
Confidence 885421 112222221 111111 01233557778988887765432 22334322 245688899
Q ss_pred HHHHHHhCCCCccccccCceEEEEEEEEeCC----------ceeccCCCC--C-CCC-CCCCCCCCCeEEecccccCCCC
Q 016397 286 MKELAKLFPDEISADQSKAKIVKYHVVKTPR----------SVYKTIPNC--E-PCR-PLQRSPVEGFYLAGDYTKQKYL 351 (390)
Q Consensus 286 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~----------a~~~~~~g~--~-~~~-~~~~~~~~~l~~aGd~~~~~~~ 351 (390)
++.|++++|++.+ .++ +..+.+|. |.|...+.. . ..+ +..+++++|||+||+++.++
T Consensus 401 l~~l~~~~p~l~~------~I~-~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG-- 471 (493)
T TIGR02730 401 IDRLEKIFPGLDS------AID-YKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPG-- 471 (493)
T ss_pred HHHHHHHCCChhh------cEE-EEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCC--
Confidence 9999999998753 233 33333333 222211110 0 112 34678999999999999876
Q ss_pred CchhHHHHHHHHHHHHHHHHh
Q 016397 352 ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 352 ~~~~gA~~SG~~aA~~il~~~ 372 (390)
+|+.+|+.||+.+|++|++++
T Consensus 472 ~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 472 QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred CCHHHHHHHHHHHHHHHHhhc
Confidence 699999999999999999864
No 22
>PLN03000 amine oxidase
Probab=99.90 E-value=1.4e-22 Score=203.54 Aligned_cols=239 Identities=18% Similarity=0.247 Sum_probs=167.1
Q ss_pred eEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhh----hcCc
Q 016397 122 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL----QLPE 197 (390)
Q Consensus 122 ~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~----ll~~ 197 (390)
....+.||+ ++|+++|++.| .|+++++|++|.+++++ | .|++. +++++||+||+|+|+.+++. +.|+
T Consensus 372 ~~~~v~GG~-~~LieaLa~~L-----~I~Ln~~Vt~I~~~~dg-V-~V~~~-~~~~~AD~VIvTVPlgVLk~~~I~F~Pp 442 (881)
T PLN03000 372 DHCFLPGGN-GRLVQALAENV-----PILYEKTVQTIRYGSNG-V-KVIAG-NQVYEGDMVLCTVPLGVLKNGSIKFVPE 442 (881)
T ss_pred ceEEeCCCH-HHHHHHHHhhC-----CcccCCcEEEEEECCCe-E-EEEEC-CcEEEeceEEEcCCHHHHhhCceeeCCC
Confidence 345678998 89999999876 49999999999997555 5 36654 45799999999999999982 2444
Q ss_pred chhccHHHHHhhcCCCccEEEEEEEeCccccccC-C--ceeecCCCcchhhhhcccccccccC-CCCcEEEEE-ec-CCC
Q 016397 198 NWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-D--HLLFSRSSLLSVYADMSLTCKEYYN-PNQSMLELV-FA-PAE 271 (390)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~-~--~~~~~~~~~~~~~~~~s~~~~~~a~-~g~~ll~~~-~~-~~~ 271 (390)
.|....++++++.|+.+.+|++.|++++|... + +.+..+....+.+. ...++.+ .+..++.+. .+ .+.
T Consensus 443 --LP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~----~f~s~sp~~G~pVLvafv~Gd~A~ 516 (881)
T PLN03000 443 --LPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFF----LFYSYAPVAGGPLLIALVAGEAAH 516 (881)
T ss_pred --CCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeE----EEeCCCCCCCCcEEEEEecCchhH
Confidence 35556788999999999999999999999531 2 12222111111110 0111222 344455443 33 345
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeCC-----ceecc-CCCCCC-CCCCCCCCC--CCeEEe
Q 016397 272 EWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR-----SVYKT-IPNCEP-CRPLQRSPV--EGFYLA 342 (390)
Q Consensus 272 ~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-----a~~~~-~~g~~~-~~~~~~~~~--~~l~~a 342 (390)
.+..++++++++.++++|.++|+.... ...+++.+.+++|.. |.|.+ .||... ....+..|+ ++||||
T Consensus 517 ~le~lSdeE~ve~vl~~Lrkifg~~~~---~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFA 593 (881)
T PLN03000 517 KFETMPPTDAVTRVLHILRGIYEPQGI---NVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFA 593 (881)
T ss_pred HhhcCCHHHHHHHHHHHHHHHhCcccc---ccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEe
Confidence 677899999999999999999963100 012456777888853 45543 355432 234455665 489999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHHHHhhhhhhh
Q 016397 343 GDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAAR 378 (390)
Q Consensus 343 Gd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~~~~~ 378 (390)
|++|+..|+++|+||+.||+|||++|+..+...+..
T Consensus 594 GEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~~~~ 629 (881)
T PLN03000 594 GEATTRRYPATMHGAFVTGLREAANMAQSAKARGIR 629 (881)
T ss_pred ehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 999999899999999999999999999988766655
No 23
>PLN02976 amine oxidase
Probab=99.90 E-value=2e-22 Score=207.65 Aligned_cols=259 Identities=19% Similarity=0.197 Sum_probs=174.5
Q ss_pred CCCcccccHHHHHHHHHHHhcccCCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECC---------CCCE
Q 016397 96 FINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND---------DGTV 166 (390)
Q Consensus 96 ~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~---------~g~v 166 (390)
+.+++++|+.++... ..+ ..-.| ....+.||+ ++|+++|++.| .|+||++|++|.++. ++.|
T Consensus 904 aa~L~eVSl~~~~qd-~~y-~~fgG-~~~rIkGGY-qqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGV 974 (1713)
T PLN02976 904 AALLKEVSLPYWNQD-DVY-GGFGG-AHCMIKGGY-SNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKV 974 (1713)
T ss_pred cCCHHHhhhhhhhcc-ccc-ccCCC-ceEEeCCCH-HHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcE
Confidence 567888888754310 001 11112 345678998 89999998765 599999999999841 2335
Q ss_pred EEEEEcCCeEEEcCEEEEecChhhHhh--h-cCcchhccHHHHHhhcCCCccEEEEEEEeCccccccC-Cce--eecCCC
Q 016397 167 KNFLLTNGNVIDGDAYVFATPVDILKL--Q-LPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-DHL--LFSRSS 240 (390)
Q Consensus 167 ~~V~~~~g~~~~ad~VI~a~p~~~~~~--l-l~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~-~~~--~~~~~~ 240 (390)
.|++.+|++++||+||+|+|+.+++. + +.+. .|.....+++++.++.+.+|++.|+++||... ..+ ...+.+
T Consensus 975 -tVtTsDGetftADaVIVTVPLGVLKag~I~FsPP-LPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtd 1052 (1713)
T PLN02976 975 -KVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPP-LPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETD 1052 (1713)
T ss_pred -EEEECCCCEEEeceEEEeCCHHHhhhcccccCCc-ccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCC
Confidence 47888898899999999999999973 3 3222 34445677899999999999999999999531 111 111111
Q ss_pred cchhhhhcccccccccCCCCcE-EEEEec-CCCCCCCCCHHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeCC--
Q 016397 241 LLSVYADMSLTCKEYYNPNQSM-LELVFA-PAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR-- 316 (390)
Q Consensus 241 ~~~~~~~~s~~~~~~a~~g~~l-l~~~~~-~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-- 316 (390)
..+.+. .. .....+.+..+ +.++.+ .+..+..++++++++.+++.|.++||... ...++.+.+++|..
T Consensus 1053 lrG~~~-~~--wnlr~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~-----iPdPv~~vvTrWssDP 1124 (1713)
T PLN02976 1053 LRGQCF-MF--WNVKKTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEAL-----VPDPVASVVTDWGRDP 1124 (1713)
T ss_pred CCceEE-Ee--ccCCCCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCccc-----ccCcceeEEecCCCCC
Confidence 111100 00 00011223344 444444 34456678999999999999999998532 12466777888843
Q ss_pred ---ceecc-CCCCCC-CCCCCCCCCCC-eEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 317 ---SVYKT-IPNCEP-CRPLQRSPVEG-FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 317 ---a~~~~-~~g~~~-~~~~~~~~~~~-l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
|.|.+ .||... .+..+..|+.| |||||++|+..|+++|+||+.||+|||++|+..+.
T Consensus 1125 ySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976 1125 FSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILN 1187 (1713)
T ss_pred CcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 45553 356532 33445667766 99999999999999999999999999999998764
No 24
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.90 E-value=8.9e-24 Score=204.89 Aligned_cols=292 Identities=28% Similarity=0.396 Sum_probs=181.2
Q ss_pred cccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhc-----ccCCceEEeecCCCCccchHH
Q 016397 63 AQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ-----EKHGSKMAFLDGNPPERLCLP 137 (390)
Q Consensus 63 ~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~-----~~~~~~~~~~~GG~~~~l~~~ 137 (390)
....+++.+|+....+.+.....++.++.....+..+...++......+..+.. ......+....|++ ...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~ 214 (450)
T PF01593_consen 139 EDDLESFLEFLDSQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGL----SLA 214 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTT----HHH
T ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccch----hHH
Confidence 345677888887654555444435555554443344555555533332222110 01111233344553 333
Q ss_pred HHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhh--hcCcchhccHHHHHhhcCCCcc
Q 016397 138 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVP 215 (390)
Q Consensus 138 l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~~~~~~~~~~~~l~~~~ 215 (390)
+...+...|++|++|++|++|+.++ +++ .|.+.||++++||+||+|+|+..+.+ +.|.. +....++++++++.+
T Consensus 215 ~~~~~~~~g~~i~l~~~V~~I~~~~-~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l--~~~~~~a~~~~~~~~ 290 (450)
T PF01593_consen 215 LALAAEELGGEIRLNTPVTRIERED-GGV-TVTTEDGETIEADAVISAVPPSVLKNILLLPPL--PEDKRRAIENLPYSS 290 (450)
T ss_dssp HHHHHHHHGGGEESSEEEEEEEEES-SEE-EEEETTSSEEEESEEEE-S-HHHHHTSEEESTS--HHHHHHHHHTEEEEE
T ss_pred HHHHHhhcCceeecCCcceeccccc-ccc-ccccccceEEecceeeecCchhhhhhhhhcccc--cccccccccccccCc
Confidence 4444445588999999999999964 556 48889999999999999999999995 44442 333456778889999
Q ss_pred EEEEEEEeCcccccc---CCceeecCC-CcchhhhhcccccccccCCCCcEEEEEecC-CCCCCCCCHHHHHHHHHHHHH
Q 016397 216 VINIHIWFDRKLKNT---YDHLLFSRS-SLLSVYADMSLTCKEYYNPNQSMLELVFAP-AEEWISCSDSEIIDATMKELA 290 (390)
Q Consensus 216 ~~~v~l~~~~~~~~~---~~~~~~~~~-~~~~~~~~~s~~~~~~a~~g~~ll~~~~~~-~~~~~~~~~ee~~~~~~~~l~ 290 (390)
+.+|++.|++++|.. ..++++.+. ....++.+.+ ..+.. +++..+..++..+ ...+..++++++++.++++|+
T Consensus 291 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~ 368 (450)
T PF01593_consen 291 VSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPS-KFPGR-PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLR 368 (450)
T ss_dssp EEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEEC-CTTSC-TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ceeEEEeeecccccccccccceecccCccccccccccc-cCccc-ccCCcceeeeeccccchhcccchhhhHHHHHHHhh
Confidence 999999999998853 223444443 1111111111 11111 2223344444443 256778899999999999999
Q ss_pred HhCCCCccccccCceEEEEEEEEeCC-----ceecc-CCCCC-CCCCCCCCCC-CCeEEecccccCCCCCchhHHHHHHH
Q 016397 291 KLFPDEISADQSKAKIVKYHVVKTPR-----SVYKT-IPNCE-PCRPLQRSPV-EGFYLAGDYTKQKYLASMEGAVLSGK 362 (390)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~~~~~~~~-----a~~~~-~~g~~-~~~~~~~~~~-~~l~~aGd~~~~~~~~~~~gA~~SG~ 362 (390)
+++|... ..++....+.+|.+ +.|.+ .++.. ..++..++|+ +||||||||++++|++++++|+.||+
T Consensus 369 ~~~~~~~-----~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~ 443 (450)
T PF01593_consen 369 KILPGAS-----IPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGR 443 (450)
T ss_dssp HHHTTGG-----GGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHH
T ss_pred hcccccc-----ccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHH
Confidence 9999521 12455666777765 22222 22221 1345566777 69999999999988789999999999
Q ss_pred HHHHHHH
Q 016397 363 LCAQAIV 369 (390)
Q Consensus 363 ~aA~~il 369 (390)
+||++|+
T Consensus 444 ~aA~~il 450 (450)
T PF01593_consen 444 RAAEEIL 450 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999986
No 25
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.89 E-value=5.8e-22 Score=199.31 Aligned_cols=238 Identities=18% Similarity=0.221 Sum_probs=164.3
Q ss_pred eEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhh----hcCc
Q 016397 122 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL----QLPE 197 (390)
Q Consensus 122 ~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~----ll~~ 197 (390)
....+.||+ ++|+++|++.| .|++|++|++|..++++ | .| +.+|+++.||+||+|+|+.++++ +.|+
T Consensus 428 ~~~~v~GG~-~~Li~aLa~~L-----~I~ln~~V~~I~~~~dg-V-~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~ 498 (808)
T PLN02328 428 DHCFIPGGN-DTFVRELAKDL-----PIFYERTVESIRYGVDG-V-IV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPE 498 (808)
T ss_pred eEEEECCcH-HHHHHHHHhhC-----CcccCCeeEEEEEcCCe-E-EE-EeCCeEEEcCEEEECCCHHHHhhcccccCCC
Confidence 456678997 89999999766 49999999999997655 4 24 45788899999999999999984 2333
Q ss_pred chhccHHHHHhhcCCCccEEEEEEEeCccccccC-C--ceeecCCCcchhhhhccccccccc-CCCCcEEEEEec--CCC
Q 016397 198 NWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-D--HLLFSRSSLLSVYADMSLTCKEYY-NPNQSMLELVFA--PAE 271 (390)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~-~--~~~~~~~~~~~~~~~~s~~~~~~a-~~g~~ll~~~~~--~~~ 271 (390)
.|....++++++.|..+.+|.+.|++++|... + +++..+....+.+. ...++. ..+..++...+. .+.
T Consensus 499 --LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~----lf~s~s~~~G~~vLvafv~G~~A~ 572 (808)
T PLN02328 499 --LPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFF----LFYSYSSVSGGPLLIALVAGDAAV 572 (808)
T ss_pred --CCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEE----EEecCCCCCCCcEEEEEecChhhH
Confidence 34456778999999999999999999999531 1 22222211111110 001111 123455544333 344
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeCC-----ceecc-CCCCCC-CCCCCCCCC--CCeEEe
Q 016397 272 EWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR-----SVYKT-IPNCEP-CRPLQRSPV--EGFYLA 342 (390)
Q Consensus 272 ~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-----a~~~~-~~g~~~-~~~~~~~~~--~~l~~a 342 (390)
.+..++++++++.++++|.++|+.... ...++..+.+++|.. |.|.+ .+|+.. ..+.+..|+ ++||||
T Consensus 573 ~~e~lsdeE~v~~vL~~Lr~ifgp~~~---~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FA 649 (808)
T PLN02328 573 KFETLSPVESVKRVLQILRGIFHPKGI---VVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFA 649 (808)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhCcccc---cccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEE
Confidence 567789999999999999999873110 012456777888864 34432 345422 223344554 589999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHHHHhhhhhh
Q 016397 343 GDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAA 377 (390)
Q Consensus 343 Gd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~~~~ 377 (390)
|++++..|+++|+||+.||.+||++|+..+..-..
T Consensus 650 GEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~~ 684 (808)
T PLN02328 650 GEATNKQYPATMHGAFLSGMREAANILRVARRRSL 684 (808)
T ss_pred EhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999888899999999999999999998765543
No 26
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.86 E-value=1.4e-20 Score=170.68 Aligned_cols=290 Identities=16% Similarity=0.195 Sum_probs=208.8
Q ss_pred ccccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHH----------------Hhcc--------
Q 016397 62 EAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNR----------------FLQE-------- 117 (390)
Q Consensus 62 ~~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~----------------~~~~-------- 117 (390)
.+..|+|+.+|++|+ |++++.+++++|+++++|++|++++|+...+..+.. +..+
T Consensus 151 ~~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~ 229 (491)
T KOG1276|consen 151 DPSADESVESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETA 229 (491)
T ss_pred CCCccccHHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccch
Confidence 346799999999999 999999999999999999999999999988764421 1100
Q ss_pred ------cCCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE--cCCe-EEEcCEEEEecCh
Q 016397 118 ------KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TNGN-VIDGDAYVFATPV 188 (390)
Q Consensus 118 ------~~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~--~~g~-~~~ad~VI~a~p~ 188 (390)
.........+||+ +.++++|.+.|.+..+.|.++-++..+.....|.+ .+.+ .++. .+..++++.|+|.
T Consensus 230 ~~~~~~~e~~~~~sl~gGl-e~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~-~~tl~~~~~~~~~~~~~~~~t~~~ 307 (491)
T KOG1276|consen 230 LSAQAKKEKWTMFSLKGGL-ETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNW-SLTLVDHSGTQRVVVSYDAATLPA 307 (491)
T ss_pred hhhhhcccccchhhhhhhH-hHhHHHHHHHhcccchhhhcccccccccccccCCc-eeEeEcCCCceeeeccccccccch
Confidence 1112334568998 99999999999888889999999999987655543 2444 3443 3445667779999
Q ss_pred hhHhhhcCcchhccHHHHHhhcCCCccEEEEEEEeCcc-cc---ccCCceee--cC--CCcchhhhhcccccccccCCCC
Q 016397 189 DILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRK-LK---NTYDHLLF--SR--SSLLSVYADMSLTCKEYYNPNQ 260 (390)
Q Consensus 189 ~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~-~~---~~~~~~~~--~~--~~~~~~~~~~s~~~~~~a~~g~ 260 (390)
..+..+++.. ......++.++.|.++..|++.|.++ .. .+++.++. .. ...+++++|.. .++...+.+
T Consensus 308 ~k~a~ll~~~--~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~-~Fp~~~~s~- 383 (491)
T KOG1276|consen 308 VKLAKLLRGL--QNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSM-LFPDRSPSP- 383 (491)
T ss_pred HHhhhhcccc--chhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecc-cCCCCCCCc-
Confidence 9999999874 22345667889999999999999875 22 25555555 22 23456544422 344444433
Q ss_pred cEEEEEe--cCCCC--CCCCCHHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeCCceeccCCCCCCCC----CCC
Q 016397 261 SMLELVF--APAEE--WISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCR----PLQ 332 (390)
Q Consensus 261 ~ll~~~~--~~~~~--~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~----~~~ 332 (390)
.++++. +.... ....|.||+++.+.++|.++++... ++....++-|++..|+|..|++... ..+
T Consensus 384 -~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~-------~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l 455 (491)
T KOG1276|consen 384 -KVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISN-------KPVSVNVHLWKNCIPQYTVGHDDVLEAAKSML 455 (491)
T ss_pred -eEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCC-------CcccccceehhhcccceecchHHHHHHHHHHH
Confidence 333332 22222 3456889999999999999998643 3666677789999999999986422 122
Q ss_pred CC-CCCCeEEecccccCCCCCchhHHHHHHHHHHHHHH
Q 016397 333 RS-PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 369 (390)
Q Consensus 333 ~~-~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il 369 (390)
.+ +..+|++||.|..+ .++++++.||+++|.+++
T Consensus 456 ~~~~g~~l~l~G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 456 TDSPGLGLFLGGNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred HhCCCCceEeeccccCC---CChhHHHHhhHHHHHhhc
Confidence 22 23589999999987 699999999999998774
No 27
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.81 E-value=1.1e-17 Score=152.62 Aligned_cols=237 Identities=22% Similarity=0.284 Sum_probs=157.5
Q ss_pred eEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEE-ecChhhHhhhcCcchh
Q 016397 122 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVF-ATPVDILKLQLPENWK 200 (390)
Q Consensus 122 ~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~-a~p~~~~~~ll~~~~~ 200 (390)
.+.||.||| ..+++++++.+++.|++|.+++.|.+|..+ +|++++|.++||+++++..||+ |+|..++.+|+|....
T Consensus 255 ~~~Yp~GG~-Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~L 332 (561)
T KOG4254|consen 255 GWGYPRGGM-GAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEAL 332 (561)
T ss_pred cccCCCCCh-hHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccC
Confidence 567999998 799999999999999999999999999996 5899999999999999999999 5677888899999877
Q ss_pred ccHHHHHhhcCCCc-cEEE----EEEEeCcccccc---CCceee-c--C---------CCcc------hhh--hhccccc
Q 016397 201 EMAYFKRLEKLVGV-PVIN----IHIWFDRKLKNT---YDHLLF-S--R---------SSLL------SVY--ADMSLTC 252 (390)
Q Consensus 201 ~~~~~~~~~~l~~~-~~~~----v~l~~~~~~~~~---~~~~~~-~--~---------~~~~------~~~--~~~s~~~ 252 (390)
|.++ .++++.+. ++.+ .++..+.....+ ....+. . + ++.- .++ .-+|..+
T Consensus 333 Peef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~lD 410 (561)
T KOG4254|consen 333 PEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSLD 410 (561)
T ss_pred Cchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccccC
Confidence 7665 56666554 3432 233322211111 111111 0 0 0000 111 1123466
Q ss_pred ccccCCCCcEEEEEe-cCCCCCCCCC-------HHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeC---------
Q 016397 253 KEYYNPNQSMLELVF-APAEEWISCS-------DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTP--------- 315 (390)
Q Consensus 253 ~~~a~~g~~ll~~~~-~~~~~~~~~~-------~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--------- 315 (390)
+.++|++++++.+.. +....|.... +++..+++++.+++++|++.. .++.+.+- +|
T Consensus 411 ptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfss------sv~~~dvg-TP~t~qr~l~~ 483 (561)
T KOG4254|consen 411 PTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSS------SVESYDVG-TPPTHQRFLGR 483 (561)
T ss_pred CCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccc------eEEEEecC-CCchhhHHhcC
Confidence 778999999887542 2223444332 467889999999999999863 34444332 22
Q ss_pred -Cceecc-CCCCCC---CCCCC-----CCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 316 -RSVYKT-IPNCEP---CRPLQ-----RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 316 -~a~~~~-~~g~~~---~~~~~-----~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
+|.+.. .-+... .+|.. ++|++|||+||+.+.++ +++.++. |+.+|...+.+..
T Consensus 484 ~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~~ 547 (561)
T KOG4254|consen 484 PGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDRK 547 (561)
T ss_pred CCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhhhh
Confidence 232221 112211 23443 88999999999999886 6777664 9999887766543
No 28
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=3.1e-17 Score=158.73 Aligned_cols=234 Identities=25% Similarity=0.312 Sum_probs=164.6
Q ss_pred EeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhh--hcCcchhc
Q 016397 124 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKE 201 (390)
Q Consensus 124 ~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~~~ 201 (390)
....+|+ ..++..|+. |.+|+++++|.+|.+.+++.+ .+++.++..+.+|+||+|+|..+++. +.-.+..|
T Consensus 212 ~~~~~G~-~~v~~~la~-----~l~I~~~~~v~~i~~~~~~~~-~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp 284 (501)
T KOG0029|consen 212 LLMKGGY-EPVVNSLAE-----GLDIHLNKRVRKIKYGDDGAV-KVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP 284 (501)
T ss_pred hHhhCCc-cHHHhhcCC-----CcceeeceeeEEEEEecCCce-EEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence 3457786 677777775 789999999999999766643 35666676699999999999999987 32122245
Q ss_pred cHHHHHhhcCCCccEEEEEEEeCccccc-cCCceeecC-C-Ccch--hhhhcccccccccCCCCcEEEEEec-CCCCCCC
Q 016397 202 MAYFKRLEKLVGVPVINIHIWFDRKLKN-TYDHLLFSR-S-SLLS--VYADMSLTCKEYYNPNQSMLELVFA-PAEEWIS 275 (390)
Q Consensus 202 ~~~~~~~~~l~~~~~~~v~l~~~~~~~~-~~~~~~~~~-~-~~~~--~~~~~s~~~~~~a~~g~~ll~~~~~-~~~~~~~ 275 (390)
....++|+++....+.+|.+.|++.+|. ..+.+.... . ...+ .|.++. +. + ....++..... .+..+..
T Consensus 285 ~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~---~~-~-~~~~l~~~~~~~~a~~~~~ 359 (501)
T KOG0029|consen 285 RWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSVLRGLFTFYDCK---PV-A-GHPVLMSVVVGEAAERVET 359 (501)
T ss_pred HHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccccccchhhhhhcC---cc-C-CCCeEEEEehhhhhHHHhc
Confidence 5677889999999999999999999994 222222221 1 1112 222222 11 1 11234444333 3456778
Q ss_pred CCHHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeCC-----ceeccC-CCCCC-CCCCCCCCCCC-eEEeccccc
Q 016397 276 CSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR-----SVYKTI-PNCEP-CRPLQRSPVEG-FYLAGDYTK 347 (390)
Q Consensus 276 ~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-----a~~~~~-~g~~~-~~~~~~~~~~~-l~~aGd~~~ 347 (390)
++++++++.++..|+++|+... ...++++.+.+|.. +.|.+. ++... ..+.++.|+.| +||||++|.
T Consensus 360 ~~~~~~~~~~~~~l~k~f~~~~-----~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~ 434 (501)
T KOG0029|consen 360 LSDSEIVKKAMKLLRKVFGSEE-----VPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATS 434 (501)
T ss_pred CCHHHHHHHHHHHHHHHhccCc-----CCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhc
Confidence 9999999999999999999322 22467777777743 444332 22211 12455677877 999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhh
Q 016397 348 QKYLASMEGAVLSGKLCAQAIVQDYVL 374 (390)
Q Consensus 348 ~~~~~~~~gA~~SG~~aA~~il~~~~~ 374 (390)
..|+++|+||+.||.++|..|+..+..
T Consensus 435 ~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 435 RKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred ccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999999999999999885
No 29
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.73 E-value=8.9e-17 Score=148.54 Aligned_cols=295 Identities=21% Similarity=0.268 Sum_probs=183.1
Q ss_pred ccCccHHHHHHHcCC------------ChHHHHHHHHHHHH---hccCC-CcccccHHHHHHHHHHHhcccCC-ceEEee
Q 016397 64 QDGLTVQEWMRKQGV------------PDRVTTEVFIAMSK---ALNFI-NPDELSMQCILIALNRFLQEKHG-SKMAFL 126 (390)
Q Consensus 64 ~d~~s~~e~l~~~g~------------~~~~~~~~~~p~~~---~~~~~-~~~~~Sa~~~~~~l~~~~~~~~~-~~~~~~ 126 (390)
.+.-|+.+|+.+. + ..++...+++-+.. .+.+. +.+++|...+.. +-. -.| ....+.
T Consensus 145 ~~~~SvG~~ln~~-~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~e----y~~-~~ge~~~~~~ 218 (498)
T KOG0685|consen 145 HDEGSVGEYLNSE-FWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALLE----YTE-CPGEELLIWN 218 (498)
T ss_pred CccccHHHHHHHH-HHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhccc----eee-cCchhhheec
Confidence 4677888888851 1 12334445555543 22222 333444443321 110 112 123344
Q ss_pred cCCCCccchHHHHHHHHH----cC--cEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhh----hcC
Q 016397 127 DGNPPERLCLPIVEHIQS----LG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL----QLP 196 (390)
Q Consensus 127 ~GG~~~~l~~~l~~~l~~----~G--~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~----ll~ 196 (390)
.-|+ ..+.+.|++.+.+ .| .+|+++++|.+|...+++.+ .|++.||+.+.||+||||++..++++ |+.
T Consensus 219 ~kGy-~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~ 296 (498)
T KOG0685|consen 219 KKGY-KRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFV 296 (498)
T ss_pred hhHH-HHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcE-EEEEeCCcEEeccEEEEEeechhhhhhhhhhcC
Confidence 4565 6788888876652 22 45666799999998766777 48999999999999999999999987 544
Q ss_pred cchhccHHHHHhhcCCCccEEEEEEEeCcccccc-CCc--eeecCCCcc---h----hhhhcccccc-cccCCCCcEEE-
Q 016397 197 ENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT-YDH--LLFSRSSLL---S----VYADMSLTCK-EYYNPNQSMLE- 264 (390)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~-~~~--~~~~~~~~~---~----~~~~~s~~~~-~~a~~g~~ll~- 264 (390)
+. .|....++|+++.++.+.+++|.|++|+|+. +.. .++.+.... . .+.+.....+ .++ .++|.
T Consensus 297 P~-LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~---~~vL~g 372 (498)
T KOG0685|consen 297 PP-LPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWA---PNVLLG 372 (498)
T ss_pred CC-CCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcc---hhhhhe
Confidence 33 4666788999999999999999999999963 332 233332211 0 1111110001 111 13444
Q ss_pred EEec-CCCCCCCCCHHHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEe-----CCceeccC-CCCCC--------CC
Q 016397 265 LVFA-PAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKT-----PRSVYKTI-PNCEP--------CR 329 (390)
Q Consensus 265 ~~~~-~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~-----~~a~~~~~-~g~~~--------~~ 329 (390)
.+.+ .+..+.++++||+.+.+...|.+++++..=| .+....-..| -+|.|.|. +|... ..
T Consensus 373 WiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP-----~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~ 447 (498)
T KOG0685|consen 373 WIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIP-----KPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPL 447 (498)
T ss_pred eccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCC-----CchhhhhhcccCCCccCceeeEeeccccccccchhhccC
Confidence 3333 3455778999999999999999998753211 2222223334 23666653 23211 12
Q ss_pred CC-CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhhhh
Q 016397 330 PL-QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 375 (390)
Q Consensus 330 ~~-~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~~ 375 (390)
|. ..+.-+.|.|||++|+..+-.++.||++||+|.|+++++.+...
T Consensus 448 p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~~ 494 (498)
T KOG0685|consen 448 PLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYESS 494 (498)
T ss_pred CccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHhh
Confidence 21 12234589999999988765799999999999999999976543
No 30
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.69 E-value=1.7e-17 Score=142.23 Aligned_cols=222 Identities=18% Similarity=0.168 Sum_probs=149.4
Q ss_pred CCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC-eEEEcCEEEEecChhhHhhhcCcc--hhccHH
Q 016397 128 GNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDILKLQLPEN--WKEMAY 204 (390)
Q Consensus 128 GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g-~~~~ad~VI~a~p~~~~~~ll~~~--~~~~~~ 204 (390)
-|| ..|.+.|+. ..+|+++++|++|...++. + .+.+++| +...+|.||+|+|++.+..||... ..+..+
T Consensus 105 pgm-salak~LAt-----dL~V~~~~rVt~v~~~~~~-W-~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l 176 (331)
T COG3380 105 PGM-SALAKFLAT-----DLTVVLETRVTEVARTDND-W-TLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAAL 176 (331)
T ss_pred cch-HHHHHHHhc-----cchhhhhhhhhhheecCCe-e-EEEecCCCcccccceEEEecCCCcchhhcCcccccchHHH
Confidence 355 456555554 4589999999999997444 4 4888666 456799999999999999998542 245567
Q ss_pred HHHhhcCCCccEEEEEEEeCccccccCCceeecCCCcchhhhhcccccccccCCCCcEEEEEecC--CCCCCCCCHHHHH
Q 016397 205 FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEII 282 (390)
Q Consensus 205 ~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~g~~ll~~~~~~--~~~~~~~~~ee~~ 282 (390)
.+++..+.|.|+..+.+.|..++..++.+...++.++.++-.+.+ .+...|.+. .+.+..++ +....+.++|+.+
T Consensus 177 ~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G~~vdg~~laWla~d~s--K~g~~p~~~-~~vvqasp~wSr~h~~~~~e~~i 253 (331)
T COG3380 177 RAALADVVYAPCWSAVLGYPQPLDRPWPGNFVDGHPLAWLARDAS--KKGHVPDGE-IWVVQASPDWSREHLDHPAEQVI 253 (331)
T ss_pred HHhhccceehhHHHHHhcCCccCCCCCCCcccCCCeeeeeecccc--CCCCCCcCc-eEEEEeCchHHHHhhcCCHHHHH
Confidence 888889999999999999988876555554444455544422222 223333333 22222221 2334567788888
Q ss_pred HHHHHHHHHhCCCCccccccCceEEEEEEEEeCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHH
Q 016397 283 DATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGK 362 (390)
Q Consensus 283 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~ 362 (390)
..+......+.+.-. .++.....++|+++.|....+.... ...+-.+||+||||+++ +-+|+|+.||.
T Consensus 254 ~~l~aA~~~~~~~~~------~~p~~s~~H~WrYA~P~~~~~~~~L---~ad~~~~l~~cGDwc~G---grVEgA~LSGl 321 (331)
T COG3380 254 VALRAAAQELDGDRL------PEPDWSDAHRWRYAIPNDAVAGPPL---DADRELPLYACGDWCAG---GRVEGAVLSGL 321 (331)
T ss_pred HHHHHhhhhccCCCC------CcchHHHhhccccccccccccCCcc---ccCCCCceeeecccccC---cchhHHHhccH
Confidence 777777777776321 1456667899999877633322111 11223589999999998 68999999999
Q ss_pred HHHHHHHHHh
Q 016397 363 LCAQAIVQDY 372 (390)
Q Consensus 363 ~aA~~il~~~ 372 (390)
.+|++|++.+
T Consensus 322 AaA~~i~~~L 331 (331)
T COG3380 322 AAADHILNGL 331 (331)
T ss_pred HHHHHHHhcC
Confidence 9999998754
No 31
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=1.9e-15 Score=147.93 Aligned_cols=284 Identities=18% Similarity=0.203 Sum_probs=164.8
Q ss_pred ccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhcccCCceEEeecCCCCccchHHHHHHHH
Q 016397 64 QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQ 143 (390)
Q Consensus 64 ~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~ 143 (390)
....++.+++..+ |.++.++.++........ .+|.+.++...+ +. .. .......+|+||| +.|+++|++.++
T Consensus 164 ~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a~~~~--~~-~~--~~~~G~~~p~GG~-~al~~aL~~~~~ 235 (487)
T COG1233 164 FSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPALYLL--LS-HL--GLSGGVFYPRGGM-GALVDALAELAR 235 (487)
T ss_pred HhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhHHHHH--HH-Hh--cccCCeeeeeCCH-HHHHHHHHHHHH
Confidence 3567888888888 888888877766543333 566666622222 11 11 1122467999998 899999999999
Q ss_pred HcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcC-CCccEEEEEEE
Q 016397 144 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKL-VGVPVINIHIW 222 (390)
Q Consensus 144 ~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l-~~~~~~~v~l~ 222 (390)
++|++|+++++|++|..+ +|+.+++++.+|+.+++|.||++..+.....+.+.... .+..... +..+.+..++.
T Consensus 236 ~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~al~~~~g 310 (487)
T COG1233 236 EHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADPALLARLLGEARR----PRYRGSYLKSLSALSLYLG 310 (487)
T ss_pred HcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCchhhhhhhhhhhhh----hccccchhhhhHHHHhccC
Confidence 999999999999999995 55544577777767899999999888555555543211 0011111 12234445555
Q ss_pred eCcccc-ccCCceeecCCC---cch-----------hh-hhcccccccccCCCCcEEEEEe--cCCCCCCCCCHHHHHHH
Q 016397 223 FDRKLK-NTYDHLLFSRSS---LLS-----------VY-ADMSLTCKEYYNPNQSMLELVF--APAEEWISCSDSEIIDA 284 (390)
Q Consensus 223 ~~~~~~-~~~~~~~~~~~~---~~~-----------~~-~~~s~~~~~~a~~g~~ll~~~~--~~~~~~~~~~~ee~~~~ 284 (390)
++.... ......++..+. +.. ++ ..+|..+|+++|+|++.+-+.+ .+...+.+..++++.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (487)
T COG1233 311 LKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDYDELKESLADA 390 (487)
T ss_pred CCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecCcCCChHHHHHHHHHH
Confidence 555311 111122221110 000 11 1234467888999876222222 22112222334555555
Q ss_pred HHHHHHHhCCCCccccccCceEEEEEEEEeCC------ceeccC-C------C-CCCCCCCC-CCCCCCeEEecccccCC
Q 016397 285 TMKELAKLFPDEISADQSKAKIVKYHVVKTPR------SVYKTI-P------N-CEPCRPLQ-RSPVEGFYLAGDYTKQK 349 (390)
Q Consensus 285 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~------a~~~~~-~------g-~~~~~~~~-~~~~~~l~~aGd~~~~~ 349 (390)
...++++.|++.+ .++...+. +|. +.+.-. . . ....+|.. +++++|||+||++++++
T Consensus 391 -~~~~~~~~p~~~~------~iv~~~~~-tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG 462 (487)
T COG1233 391 -IDALEELAPGLRD------RIVAREVL-TPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPG 462 (487)
T ss_pred -HHHHhhcCCCccc------ceeEEEEe-ChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCC
Confidence 6678888998752 33333332 222 111100 0 1 11234443 58999999999999987
Q ss_pred CCCchhHHHHHHHHHHHHHHH
Q 016397 350 YLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 350 ~~~~~~gA~~SG~~aA~~il~ 370 (390)
+++.++.-++...+..+..
T Consensus 463 --~Gv~g~~g~~~a~~~~~~~ 481 (487)
T COG1233 463 --GGVPGVPGSAAAVALLIDL 481 (487)
T ss_pred --CCcchhhhhHHHHHhhhcc
Confidence 7888886666655555443
No 32
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.45 E-value=2.8e-12 Score=114.14 Aligned_cols=153 Identities=17% Similarity=0.134 Sum_probs=118.5
Q ss_pred cccccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhcccCC-------ceEEeecCCCCcc
Q 016397 61 VEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG-------SKMAFLDGNPPER 133 (390)
Q Consensus 61 ~~~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~-------~~~~~~~GG~~~~ 133 (390)
.....++|+.+||++++|+..+.++++.|+..++|.++..+++..-+...+ .|.. ++| ..+..+.|| +..
T Consensus 145 ~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~-~f~~-nhGll~l~~rp~wrtV~gg-S~~ 221 (447)
T COG2907 145 NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL-VFTD-NHGLLYLPKRPTWRTVAGG-SRA 221 (447)
T ss_pred hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH-HHHh-ccCceecCCCCceeEcccc-hHH
Confidence 344678999999999999999999999999999998888887776655444 3322 112 234456777 578
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcCCC
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVG 213 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l~~ 213 (390)
.+++|++.+ +++|+++++|.+|..-.+|++ |+..+|++.++|+||+|+.++....||++. .+ +..+.+..+.|
T Consensus 222 yvq~laa~~---~~~i~t~~~V~~l~rlPdGv~--l~~~~G~s~rFD~vViAth~dqAl~mL~e~-sp-~e~qll~a~~Y 294 (447)
T COG2907 222 YVQRLAADI---RGRIETRTPVCRLRRLPDGVV--LVNADGESRRFDAVVIATHPDQALALLDEP-SP-EERQLLGALRY 294 (447)
T ss_pred HHHHHhccc---cceeecCCceeeeeeCCCceE--EecCCCCccccceeeeecChHHHHHhcCCC-CH-HHHHHHHhhhh
Confidence 888888766 579999999999999888854 666679888999999999999999999875 22 44557788899
Q ss_pred ccEEEEEEEe
Q 016397 214 VPVINIHIWF 223 (390)
Q Consensus 214 ~~~~~v~l~~ 223 (390)
+....|....
T Consensus 295 s~n~aVlhtd 304 (447)
T COG2907 295 SANTAVLHTD 304 (447)
T ss_pred hhceeEEeec
Confidence 8766665544
No 33
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.38 E-value=2.2e-11 Score=116.98 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=110.7
Q ss_pred CCChhhHHHHHcCCCCCCHHHHHHhhhhhHHHHhcccc----cccc--ccCccHHHHHHHcCCChHHHHHHHHHHHHhcc
Q 016397 22 PAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQA----YVEA--QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALN 95 (390)
Q Consensus 22 ~~P~~~~~~ll~~~~~ls~~~k~r~~~~~~~~~~~~~~----~~~~--~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~ 95 (390)
+.|.+.. +++++ +.+++.+|.++.+.+.... .... .+.. ++++|+.+|++++++++...+ ++..++....
T Consensus 118 ~vP~s~~-~~~~s-~ll~l~eKr~l~kfl~~v~-~~~~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d-~i~~~ial~~ 193 (443)
T PTZ00363 118 KVPATDM-EALSS-PLMGFFEKNRCKNFLQYVS-NYDENDPETHKGLNLKTMTMAQLYKKFGLEDNTID-FVGHAVALYT 193 (443)
T ss_pred ECCCCHH-HHhhC-CCcchhhHHHHHHHHHHHH-hhccCChhhhcccCcccCCHHHHHHHhCCCHHHHH-HHHHHHHhhc
Confidence 5566665 77778 8999999999887554332 1111 1222 457999999999999887766 4444444332
Q ss_pred CCCcccccHHHHHHHHHHHhc--ccCC-ceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc
Q 016397 96 FINPDELSMQCILIALNRFLQ--EKHG-SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT 172 (390)
Q Consensus 96 ~~~~~~~Sa~~~~~~l~~~~~--~~~~-~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~ 172 (390)
..+..+.++...+..+..++. ...| ..+.||.||+ +.|+++|++.++..|++++++++|++|..++++++.+|+++
T Consensus 194 ~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG~-g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~ 272 (443)
T PTZ00363 194 NDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGL-GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSE 272 (443)
T ss_pred ccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCCH-HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEEC
Confidence 122223344444443333321 1111 2457899997 79999999999999999999999999998766677789998
Q ss_pred CCeEEEcCEEEEec
Q 016397 173 NGNVIDGDAYVFAT 186 (390)
Q Consensus 173 ~g~~~~ad~VI~a~ 186 (390)
+|+++.|+.||+..
T Consensus 273 ~Ge~i~a~~VV~~~ 286 (443)
T PTZ00363 273 GGEVAKCKLVICDP 286 (443)
T ss_pred CCcEEECCEEEECc
Confidence 99999999999953
No 34
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.80 E-value=8.2e-08 Score=93.77 Aligned_cols=141 Identities=19% Similarity=0.255 Sum_probs=97.3
Q ss_pred CCCHHHHHHhhhhhHHHHhccccccccccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhc
Q 016397 37 MLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ 116 (390)
Q Consensus 37 ~ls~~~k~r~~~~~~~~~~~~~~~~~~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~ 116 (390)
.+++..|.++. ++.++.. ..+++|+.|+.||+++..+ +.....+|.++ + +-....||..+..++.+|+.
T Consensus 138 ~~~L~~k~r~~--Ll~l~l~---~e~~Ld~~tI~d~f~~~Ff-~t~Fw~~w~t~----F-aF~~whSA~E~rry~~rf~~ 206 (576)
T PRK13977 138 KFGLSKKDRKE--LLKLLLT---PEEKLDDKTIEDWFSPEFF-ETNFWYYWRTM----F-AFEKWHSALEMRRYMHRFIH 206 (576)
T ss_pred CCCCCHHHHHH--HHHHhcc---CHHHhCCcCHHHHHhhcCc-hhHHHHHHHHH----H-CCchhhHHHHHHHHHHHHHH
Confidence 45555555543 2333322 2467999999999999744 43434444444 3 44578999999999988753
Q ss_pred c----cCCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEEC-CC--CCEEEEEEc-CC--e---EEEcCEEE
Q 016397 117 E----KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELN-DD--GTVKNFLLT-NG--N---VIDGDAYV 183 (390)
Q Consensus 117 ~----~~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~-~~--g~v~~V~~~-~g--~---~~~ad~VI 183 (390)
+ .....+.+.+....+.|+.+|.++|+++|++|+++++|++|..+ ++ ++|++|.+. +| + ....|.||
T Consensus 207 ~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVi 286 (576)
T PRK13977 207 HIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVF 286 (576)
T ss_pred hhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEE
Confidence 2 22334555555555899999999999999999999999999985 23 567788775 33 2 23579999
Q ss_pred EecCh
Q 016397 184 FATPV 188 (390)
Q Consensus 184 ~a~p~ 188 (390)
+|+..
T Consensus 287 vTnGs 291 (576)
T PRK13977 287 VTNGS 291 (576)
T ss_pred EeCCc
Confidence 98764
No 35
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.71 E-value=8.9e-07 Score=84.48 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=102.4
Q ss_pred CCChhhHHHHHcCCCCCCHHHHHHhhhhhHHHHhcccc----ccc--cccCccHHHHHHHcCCChHHHHHHHHHHHHhcc
Q 016397 22 PAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQA----YVE--AQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALN 95 (390)
Q Consensus 22 ~~P~~~~~~ll~~~~~ls~~~k~r~~~~~~~~~~~~~~----~~~--~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~ 95 (390)
+.|-+- .+++++ +.|++.+|-++.+++.... .... .++ ...++|+.|+++++++++...+ ++-..+ +++
T Consensus 118 kVP~sr-~dvf~s-~~lsl~eKR~lmkFl~~v~-~~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~-~i~hai-aL~ 192 (438)
T PF00996_consen 118 KVPCSR-EDVFKS-KLLSLFEKRRLMKFLKFVA-NYEEDDPSTHKGLDPEKKTFQELLKKFGLSENLID-FIGHAI-ALS 192 (438)
T ss_dssp E--SSH-HHHHC--TTS-HHHHHHHHHHHHHHH-HGCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHH-HHHHHT-S-S
T ss_pred eCCCCH-HHhhcC-CCccHHHHHHHHHHHHHHh-hcccCCcchhhccccccccHHHHHHhcCCCHHHHH-HHHHhh-hhc
Confidence 344443 589988 8999999998887665442 2221 122 2447899999999999887766 432221 222
Q ss_pred CCCc-ccccHHHHHHHHHHHhc--ccC-CceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE
Q 016397 96 FINP-DELSMQCILIALNRFLQ--EKH-GSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL 171 (390)
Q Consensus 96 ~~~~-~~~Sa~~~~~~l~~~~~--~~~-~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~ 171 (390)
..+. .+-++...+..++.++. .+. ...+.||..|. +.|++.+++...=.||...||++|.+|..+++|++.+|..
T Consensus 193 ~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~-GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s 271 (438)
T PF00996_consen 193 LDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYPLYGL-GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS 271 (438)
T ss_dssp SSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-T-THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE
T ss_pred cCcccccccHHHHHHHHHHHHHHHhccCCCCEEEEccCC-ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec
Confidence 1221 13356677777776653 122 24688998886 6899999988777899999999999999977788877765
Q ss_pred cCCeEEEcCEEEEe
Q 016397 172 TNGNVIDGDAYVFA 185 (390)
Q Consensus 172 ~~g~~~~ad~VI~a 185 (390)
+|+++.|+.||..
T Consensus 272 -~ge~v~~k~vI~d 284 (438)
T PF00996_consen 272 -EGEVVKAKKVIGD 284 (438)
T ss_dssp -TTEEEEESEEEEE
T ss_pred -CCEEEEcCEEEEC
Confidence 7899999999964
No 36
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.43 E-value=2.4e-06 Score=80.52 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=81.3
Q ss_pred ccHHHHH---HHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhc-cc--CCceEEeecCCCCccchHHHHH
Q 016397 67 LTVQEWM---RKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ-EK--HGSKMAFLDGNPPERLCLPIVE 140 (390)
Q Consensus 67 ~s~~e~l---~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~-~~--~~~~~~~~~GG~~~~l~~~l~~ 140 (390)
.++.+|. .+. +++.+++.|+.|+....|+.+++++++.|+..+=.++.. .. ...-.++|++|+ +.++++|.+
T Consensus 129 ~~~~e~~d~~~~~-~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gy-t~~~~~ml~ 206 (377)
T TIGR00031 129 EELQEIADPDIQL-LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGY-TKLFEKMLD 206 (377)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccH-HHHHHHHHh
Confidence 4566665 787 999999999999999999999999999987521111100 00 012357899997 788888874
Q ss_pred HHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhh
Q 016397 141 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 193 (390)
Q Consensus 141 ~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~ 193 (390)
..+.+|+||+.+..++.. +++ +.+.++ .+. +.||.|.|.+.+-.
T Consensus 207 ---~~~i~v~l~~~~~~~~~~-~~~---~~~~~~-~~~-~~vi~Tg~id~~f~ 250 (377)
T TIGR00031 207 ---HPLIDVKLNCHINLLKDK-DSQ---LHFANK-AIR-KPVIYTGLIDQLFG 250 (377)
T ss_pred ---cCCCEEEeCCccceeecc-ccc---eeeccc-ccc-CcEEEecCchHHHh
Confidence 346799999988888753 342 334333 333 88999999876543
No 37
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.10 E-value=1.8e-05 Score=74.52 Aligned_cols=65 Identities=28% Similarity=0.447 Sum_probs=51.0
Q ss_pred EEeecCC---CCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 123 MAFLDGN---PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 123 ~~~~~GG---~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
+.++.+| . ..+.+.|.+.+++.|++|+.+++|++|..+ ++.+++|.+.+|+ +.||.||+|+.+..
T Consensus 136 ~~~~~~g~i~~-~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 136 VFFPEGGVIDP-RRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp EEETTEEEEEH-HHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred hcccccccccc-cchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccc
Confidence 3455555 3 678899999999999999999999999996 4557679999887 99999999987754
No 38
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.05 E-value=8.4e-06 Score=76.50 Aligned_cols=118 Identities=20% Similarity=0.275 Sum_probs=81.0
Q ss_pred ccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhcccCCceEEeecCCCCccchHHHHHHHH
Q 016397 64 QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQ 143 (390)
Q Consensus 64 ~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~ 143 (390)
+-+.|..|||++.|+++.+++.++++.++..|+.+ .++++...+-. +... ...+.-++||- .+|.+.|.+
T Consensus 67 ~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vS---la~a--~~gl~sV~GGN-~qI~~~ll~--- 136 (368)
T PF07156_consen 67 LTKVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVS---LAGA--TGGLWSVEGGN-WQIFEGLLE--- 136 (368)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhhee---eeec--cCCceEecCCH-HHHHHHHHH---
Confidence 34678999999999999999999999999988765 34554433221 1111 12355678884 789888875
Q ss_pred HcCcEEEcCceeeEE-EECCCCC-EEEEEEcC--C-eEEEcCEEEEecChhhHh
Q 016397 144 SLGGEVRLNSRVQKI-ELNDDGT-VKNFLLTN--G-NVIDGDAYVFATPVDILK 192 (390)
Q Consensus 144 ~~G~~I~l~~~V~~I-~~~~~g~-v~~V~~~~--g-~~~~ad~VI~a~p~~~~~ 192 (390)
+.|.++ ++++|++| ...+++. ...|...+ + ..-.+|.||+|+|.+.-.
T Consensus 137 ~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 137 ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 468899 99999999 4444443 22354443 2 233579999999996433
No 39
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.94 E-value=0.00043 Score=64.79 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=51.7
Q ss_pred EEeecCCC--CccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhH
Q 016397 123 MAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 191 (390)
Q Consensus 123 ~~~~~GG~--~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~ 191 (390)
+..+.+|. ...+...|++.+.++|++|+.+++|++|..+ ++.+++|.+.+| ++.||.||+|+.+..-
T Consensus 126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 33455552 2567778888888899999999999999985 455666787667 7999999999987653
No 40
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=8.2e-05 Score=68.47 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=103.3
Q ss_pred CCChhhHHHHHcCCCCCCHHHHHHhhhhhHHHHh---ccccccccccC--ccHHHHHHHcCCChHHHHHHHHHHHHhccC
Q 016397 22 PAPLNGILAILRNNEMLTWPEKVKFAIGLLPAII---GGQAYVEAQDG--LTVQEWMRKQGVPDRVTTEVFIAMSKALNF 96 (390)
Q Consensus 22 ~~P~~~~~~ll~~~~~ls~~~k~r~~~~~~~~~~---~~~~~~~~~d~--~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~ 96 (390)
+.|-+-. +++.+ ++|++.+|-|+.+++..... ...+.++.++. .|+++++.++|+.++.++ +.--.+....-
T Consensus 118 KVP~t~~-Ea~~s-~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~-f~gh~~al~~d 194 (440)
T KOG1439|consen 118 KVPATEA-EALTS-PLMGLFEKRRVMKFLKFVLNYDEEDPKTWQGYDLSKDTMREFLGKFGLLEGTID-FIGHAIALLCD 194 (440)
T ss_pred ECCCCHH-HHhcC-CccchhHHHHHHHHHHHHhhhhhhccccccccccccchHHHHHHHhccccccee-eeeeeeEEEec
Confidence 4554554 78878 89999999988876664421 11123455543 499999999988887766 32111122211
Q ss_pred CCcccccHHHHHHHHHHHhcc---cCCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC
Q 016397 97 INPDELSMQCILIALNRFLQE---KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN 173 (390)
Q Consensus 97 ~~~~~~Sa~~~~~~l~~~~~~---~~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~ 173 (390)
.+.-+..+...+..+..++.+ .......||..|+ +.|++.+++.-.=-||+..||.++.+|..+++|++.+|.. .
T Consensus 195 d~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP~yGl-gEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~-~ 272 (440)
T KOG1439|consen 195 DSYLDQPAKETLERILLYVRSFARYGKSPYLYPLYGL-GELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKS-G 272 (440)
T ss_pred chhccCccHHHHHHHHHHHHHHhhcCCCcceecccCc-chhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEec-C
Confidence 223355665666655444321 1223367899998 6899999876555799999999999999966788755543 2
Q ss_pred CeEEEcCEEEEe
Q 016397 174 GNVIDGDAYVFA 185 (390)
Q Consensus 174 g~~~~ad~VI~a 185 (390)
++...+..||+-
T Consensus 273 ~~v~~~k~vi~d 284 (440)
T KOG1439|consen 273 GEVAKCKKVICD 284 (440)
T ss_pred CceeecceEEec
Confidence 345667777774
No 41
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.69 E-value=0.0049 Score=59.45 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=42.3
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
+...|++.+.+.|+++..+++|++|...+++.+.+|++.+| ++.++.||+++...
T Consensus 185 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 185 VAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 44556677778999999999999998644455656788777 68999998876654
No 42
>PRK10015 oxidoreductase; Provisional
Probab=97.63 E-value=0.011 Score=57.50 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 136 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 136 ~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
..|.+.+++.|++|+.+++|+.|..+ ++++++|.+ ++.+++||.||.|....
T Consensus 112 ~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 112 PWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred HHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 34677777889999999999999875 455655554 45679999999998764
No 43
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.63 E-value=0.0031 Score=60.96 Aligned_cols=66 Identities=21% Similarity=0.324 Sum_probs=49.0
Q ss_pred EEeecCCCC--ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 123 MAFLDGNPP--ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 123 ~~~~~GG~~--~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
+.++.+|.. ..+...|.+.+++.|++|+++++|++|+.++ +.+.+|++.+| ++.||.||+|+....
T Consensus 190 ~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 190 LRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 345554421 3567788888888999999999999999854 44545776554 689999999998754
No 44
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.49 E-value=0.0018 Score=62.13 Aligned_cols=67 Identities=28% Similarity=0.434 Sum_probs=46.7
Q ss_pred EEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 123 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 123 ~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
..||.-.-...+.+.|.+.+++.|++|+++++|++|..++++ +..|.+++++++.||.||+|+....
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDG-VFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTE-EEEEEETTTEEEEESEEEE----SS
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCc-eeEeeccCcccccCCEEEEecCCCC
Confidence 457865435789999999999999999999999999986444 4468886778899999999987544
No 45
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.48 E-value=0.0015 Score=62.63 Aligned_cols=139 Identities=21% Similarity=0.306 Sum_probs=89.0
Q ss_pred CCCHHHHHHhhhhhHHHHhccccccccccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhc
Q 016397 37 MLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ 116 (390)
Q Consensus 37 ~ls~~~k~r~~~~~~~~~~~~~~~~~~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~ 116 (390)
.|+.++++.+.+.++ .. .+.+++.++.||+...-|.. .||. +++.+|+-.+ --||..+-.++.+|+.
T Consensus 121 ~Ls~k~r~eL~kL~l----~~---E~~L~~~~I~d~F~~~FF~S----nFW~-~W~T~FAFqp-WhSa~E~rRyl~Rf~h 187 (500)
T PF06100_consen 121 GLSEKDRMELIKLLL----TP---EEDLGDKRIEDWFSESFFES----NFWY-MWSTMFAFQP-WHSAVEFRRYLHRFIH 187 (500)
T ss_pred CCCHHHHHHHHHHhc----CC---HHHhCcccHHHhcchhhhcC----chhH-hHHHhhccCc-chhHHHHHHHHHHHHH
Confidence 477778877765444 22 35689999999998752332 3553 3334443333 4688899888888875
Q ss_pred ccCC----ceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCC---CEEEEEE-cCCe--EE---EcCEEE
Q 016397 117 EKHG----SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG---TVKNFLL-TNGN--VI---DGDAYV 183 (390)
Q Consensus 117 ~~~~----~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g---~v~~V~~-~~g~--~~---~ad~VI 183 (390)
.-.+ ..+.+.+=...++++.+|.++|+++|+++++|++|+.|..+.++ .++++.+ .+|+ ++ .-|.|+
T Consensus 188 ~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~ 267 (500)
T PF06100_consen 188 EIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVF 267 (500)
T ss_pred hcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEE
Confidence 3222 11222222223889999999999999999999999999985322 2344444 3453 33 347888
Q ss_pred EecCh
Q 016397 184 FATPV 188 (390)
Q Consensus 184 ~a~p~ 188 (390)
+|...
T Consensus 268 vT~GS 272 (500)
T PF06100_consen 268 VTNGS 272 (500)
T ss_pred EECCc
Confidence 87643
No 46
>PRK06847 hypothetical protein; Provisional
Probab=97.42 E-value=0.0051 Score=58.56 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+.+.|.+.+++.|++|+++++|++|+.++++ + .|.+.+|+++++|.||.|....
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDG-V-TVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-E-EEEEcCCCEEEcCEEEECcCCC
Confidence 45667777777789999999999999985443 5 4777888889999999998764
No 47
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.40 E-value=0.0059 Score=58.55 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=47.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQ 194 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~l 194 (390)
.+.+.|.+.+++.|++|+.+++|++|..++++ + .|++.+|+++++|.||.|.... .+.+.
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vV~AdG~~S~vr~~ 174 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADR-V-RLRLDDGRRLEAALAIAADGAASTLREL 174 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-E-EEEECCCCEEEeCEEEEecCCCchHHHh
Confidence 56778888888889999999999999986443 5 3777788889999999998764 33343
No 48
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.38 E-value=0.016 Score=55.62 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=43.9
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQ 194 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~l 194 (390)
+-+-|++..++.|++++.+++|+.+..++++.+. +...++.+++|+.||.|..++ .+.+.
T Consensus 97 fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~a~~vI~AdG~~s~l~~~ 157 (396)
T COG0644 97 FDKWLAERAEEAGAELYPGTRVTGVIREDDGVVV-GVRAGDDEVRAKVVIDADGVNSALARK 157 (396)
T ss_pred hhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEE-EEEcCCEEEEcCEEEECCCcchHHHHH
Confidence 3345777777889999999999999997666543 334444689999999998763 44433
No 49
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.33 E-value=0.0092 Score=57.02 Aligned_cols=65 Identities=23% Similarity=0.389 Sum_probs=49.2
Q ss_pred EEeecCCC--CccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 123 MAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 123 ~~~~~GG~--~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
+.++.+|. ...+...|.+.+++ |++|+.+++|++|+.++ +.+ .|++.+|+.+.||.||+|+.+..
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~-~~~-~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG-EGW-QLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC-CeE-EEEeCCCCEEEcCEEEEcCCccc
Confidence 34555552 14567777777777 99999999999999854 434 48888887789999999988764
No 50
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.29 E-value=0.016 Score=55.27 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=48.1
Q ss_pred ccchHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhhc
Q 016397 132 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 132 ~~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
..+.+.|.+.+.+ .|++++.+++|++|..++++ + .|++.+|++++||.||.|...+ .+.+.+
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAADGANSKVRELL 168 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEecCCChHHHHHc
Confidence 3577788888777 48999999999999986554 5 3777788889999999998875 344444
No 51
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.29 E-value=0.00051 Score=63.77 Aligned_cols=67 Identities=22% Similarity=0.390 Sum_probs=55.5
Q ss_pred Eeec-CCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhh
Q 016397 124 AFLD-GNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 193 (390)
Q Consensus 124 ~~~~-GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~ 193 (390)
.||. .. ++.|+++|.+++++.|++|+++++|.+|..++++ . .|.+.+|++++||.+|+|+.--...+
T Consensus 103 ~Fp~sdk-A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~-f-~l~t~~g~~i~~d~lilAtGG~S~P~ 170 (408)
T COG2081 103 MFPDSDK-ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG-F-RLDTSSGETVKCDSLILATGGKSWPK 170 (408)
T ss_pred ecCCccc-hHHHHHHHHHHHHHcCcEEEecceEEeEEecCce-E-EEEcCCCCEEEccEEEEecCCcCCCC
Confidence 4776 55 4899999999999999999999999999996433 4 48888898899999999987544443
No 52
>PRK07045 putative monooxygenase; Reviewed
Probab=97.28 E-value=0.017 Score=55.38 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=46.7
Q ss_pred cchHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhh
Q 016397 133 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKL 193 (390)
Q Consensus 133 ~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ 193 (390)
.|.+.|.+.+.+ .|++|+++++|+.|+.++++.++.|++.+|+++++|.||.|.... .+.+
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHH
Confidence 355566666643 578999999999999876665446888888899999999998764 4455
No 53
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.24 E-value=0.019 Score=54.79 Aligned_cols=61 Identities=18% Similarity=0.185 Sum_probs=47.0
Q ss_pred cchHHHHHHHHHcC-cEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhhc
Q 016397 133 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 133 ~l~~~l~~~l~~~G-~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
.+.+.|.+.+.+.| ++|+.+++|++|..+++ .+ .|++.+|+++++|.||.|.... .+.+.+
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~~-~v~~~~g~~~~~~~vi~adG~~S~vr~~l 169 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSD-HV-ELTLDDGQQLRARLLVGADGANSKVRQLA 169 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-ee-EEEECCCCEEEeeEEEEeCCCCCHHHHHc
Confidence 56777888887777 99999999999998544 45 4778889889999999987653 333433
No 54
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.22 E-value=0.022 Score=54.81 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhhc
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
.+.+.|.+.+.+.|++|+.+++|++|..+++ .+ .|++.+|+++++|.||.|.... .+.+.+
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vI~AdG~~S~vr~~~ 173 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDE-GV-TVTLSDGSVLEARLLVAADGARSKLRELA 173 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-EE-EEEECCCCEEEeCEEEEcCCCChHHHHHc
Confidence 5677888888888999999999999998544 35 4777888889999999998763 344443
No 55
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.20 E-value=0.024 Score=55.63 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.++..|++.+++.|++|+.+++|++|+. +++ + .|++.+| +++||.||+|+...
T Consensus 184 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~-~-~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 184 LLVRGLRRVALELGVEIHENTPMTGLEE-GQP-A-VVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEee-CCc-e-EEEeCCc-EEECCEEEEccccc
Confidence 5677888888889999999999999986 333 4 4777767 68999999998764
No 56
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.15 E-value=0.013 Score=56.17 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=45.8
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhhc
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
.+.+.|.+.+.+.++..+++++|++|..++++ + .|++.+|+++++|.||.|.... .+.+.+
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPREDE-V-TVTLADGTTLSARLVVGADGRNSPVREAA 173 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCCe-E-EEEECCCCEEEEeEEEEecCCCchhHHhc
Confidence 56777888777766555999999999886554 5 3788888889999999988764 334433
No 57
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.11 E-value=0.048 Score=49.73 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC-CeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~-g~~~~ad~VI~a~p~~ 189 (390)
.+.+.|.+.+++.|++++++++|+++..++++ + .+.+.+ +.++++|.||.|....
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~-~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-V-VVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-E-EEEEcCccEEEEeCEEEECCCcc
Confidence 45567788788889999999999999885443 4 244443 4679999999998874
No 58
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.06 E-value=0.041 Score=52.71 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=45.9
Q ss_pred cchHHHHHHHHHc-CcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhhc
Q 016397 133 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 133 ~l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
.+-+.|.+.+.+. |++|+.+++|++|..++++ + .|++.+|++++||.||.|.... .+.+.+
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S~vR~~~ 175 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDG-W-ELTLADGEEIQAKLVIGADGANSQVRQMA 175 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-E-EEEECCCCEEEeCEEEEeCCCCchhHHHc
Confidence 4556677776665 8999999999999875444 4 4777788889999999998764 444444
No 59
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.98 E-value=0.016 Score=56.28 Aligned_cols=52 Identities=23% Similarity=0.401 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 136 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 136 ~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
+.|.+.+++.|++|+.+++|++|..+ ++++.++. .+|++++||.||.|...+
T Consensus 112 ~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 112 AWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred HHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 44667777789999999999999875 45554444 466789999999998764
No 60
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.96 E-value=0.0023 Score=60.37 Aligned_cols=55 Identities=38% Similarity=0.578 Sum_probs=47.3
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
.+++.|.+.|+++|++|+++|+|+.|... ++.+.+|.+++|+++.+|+||+|+.-
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCc
Confidence 34677788899999999999999999995 55566788999999999999999864
No 61
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.91 E-value=0.059 Score=51.98 Aligned_cols=56 Identities=18% Similarity=0.270 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC-----eEEEcCEEEEecChhh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDI 190 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g-----~~~~ad~VI~a~p~~~ 190 (390)
.+...|.+.+++.|++|+.+++|++|..++ +.++ +.+.++ .+++||.||+|+.+..
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDG-GGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEE-EEEEcCCCCccceEecCEEEECCCcCh
Confidence 456677788888999999999999999753 4343 444332 2689999999998754
No 62
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.91 E-value=0.085 Score=50.80 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=48.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh-hhHhhhcC
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV-DILKLQLP 196 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~-~~~~~ll~ 196 (390)
.+.+.|.+.+++.|++|+.+++|++|+.++++ + .|++.+|++++||.||.|... ..+.+++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 45567777787789999999999999986555 5 377888888999999998876 45555543
No 63
>PRK07190 hypothetical protein; Provisional
Probab=96.85 E-value=0.2 Score=49.57 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=45.7
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhhc
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
+-+.|.+.+++.|++|+.+++|++|..++++ ++ +.+.+|++++|+.||.|.... .+.+.+
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v~-v~~~~g~~v~a~~vVgADG~~S~vR~~l 171 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-CL-TTLSNGERIQSRYVIGADGSRSFVRNHF 171 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-eE-EEECCCcEEEeCEEEECCCCCHHHHHHc
Confidence 4445566777889999999999999987555 43 566778889999999998874 344443
No 64
>PRK09126 hypothetical protein; Provisional
Probab=96.84 E-value=0.046 Score=52.37 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=44.1
Q ss_pred chHHHHHHHH-HcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhhc
Q 016397 134 LCLPIVEHIQ-SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 134 l~~~l~~~l~-~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
+-+.|.+.+. ..|++|+.+++|++++.++++ + .|++++|++++||.||.|.... .+.+.+
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-A-QVTLANGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-E-EEEEcCCCEEEeCEEEEeCCCCchhhHhc
Confidence 4455555554 368999999999999885443 5 4778888889999999998863 444443
No 65
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.82 E-value=0.063 Score=51.41 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=50.2
Q ss_pred ccchHHHHHHHHHcC-cEEEcCceeeEEEECCCCCEEEEEEc-CCeEEEcCEEEEecChh-hHhhhcC
Q 016397 132 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVD-ILKLQLP 196 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G-~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~~~~ad~VI~a~p~~-~~~~ll~ 196 (390)
..|.+.|.+.+.+.+ ++|+.+++|+.+..++++ ++ |++. ||++++||.||-|-..+ .+.+.+.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG-VT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc-eE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 357788888888777 799999999999997544 65 7777 99999999999998764 4455554
No 66
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.81 E-value=0.0042 Score=59.33 Aligned_cols=59 Identities=29% Similarity=0.322 Sum_probs=49.2
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeE-EEcCEEEEecChhhH
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV-IDGDAYVFATPVDIL 191 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~-~~ad~VI~a~p~~~~ 191 (390)
..+..+|++.+.++|++|++|++|+.|+..+|| ++.+.+.+|++ ++|+.||.+....+.
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH
Confidence 457788899999999999999999999997775 43477888866 999999999887543
No 67
>PRK08244 hypothetical protein; Provisional
Probab=96.75 E-value=0.14 Score=50.66 Aligned_cols=60 Identities=25% Similarity=0.320 Sum_probs=42.9
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc--CC-eEEEcCEEEEecChh-hHhhhc
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG-NVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~--~g-~~~~ad~VI~a~p~~-~~~~ll 195 (390)
+-+.|.+.+++.|++|+.+++|++|..++++ ++ |++. +| +++++|.||-|.... .+.+.+
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l 165 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDG-VE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQA 165 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe-EE-EEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence 4455666677789999999999999986554 42 4443 45 478999999988763 444544
No 68
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.75 E-value=0.46 Score=45.41 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=43.6
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
..+.+.|.+.+.+.|++++ +++|+.+..++++.+ .|++.+|++++||.||.|++...
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~-~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALS-TVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCcee-EEEeCCCCEEEeCEEEECCCCch
Confidence 3566778888877888885 668999987533434 47777887899999999998865
No 69
>PLN02463 lycopene beta cyclase
Probab=96.74 E-value=0.22 Score=48.57 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+-+.|.+.+.+.|++++ +++|++|..++++ + .|++++|++++||.||.|....
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~-~-~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESK-S-LVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe-E-EEEECCCCEEEcCEEEECcCCC
Confidence 455677777777899986 6799999986443 4 4888889889999999998764
No 70
>PRK06834 hypothetical protein; Provisional
Probab=96.71 E-value=0.18 Score=49.89 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=46.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhhc
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
.+-+.|.+.+++.|++|+.+++|++|..++++ + .|++.+|+++++|.||.|.... .+.+.+
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~g~~i~a~~vVgADG~~S~vR~~l 162 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSDGRTLRAQYLVGCDGGRSLVRKAA 162 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCCCcHhhc
Confidence 35566777777889999999999999986554 5 3777778889999999988764 344443
No 71
>PRK07588 hypothetical protein; Provisional
Probab=96.64 E-value=0.059 Score=51.65 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=42.3
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKL 193 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ 193 (390)
|.+.|.+.+. .|++|+++++|++|+.++++ ++ |++++|+++++|.||-|.... .+.+
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~-v~-v~~~~g~~~~~d~vIgADG~~S~vR~ 162 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHRDG-VR-VTFERGTPRDFDLVIGADGLHSHVRR 162 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECCCe-EE-EEECCCCEEEeCEEEECCCCCccchh
Confidence 4455555553 36899999999999986444 53 788899889999999988763 3344
No 72
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.64 E-value=0.11 Score=49.73 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=46.1
Q ss_pred cchHHHHHHHHHcC-cEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhhc
Q 016397 133 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 133 ~l~~~l~~~l~~~G-~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
.+.+.|.+.+++.| ++++ +++|++|..++++ + .|++.+|++++||.||.|.... .+.+.+
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDA-A-TLTLADGQVLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe-E-EEEECCCCEEEeeEEEEeCCCCchHHHhc
Confidence 56778888888777 8888 9999999875444 5 4788888789999999988764 444443
No 73
>PRK06185 hypothetical protein; Provisional
Probab=96.62 E-value=0.18 Score=48.61 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=44.0
Q ss_pred cchHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEE--cCCe-EEEcCEEEEecChh-hHhhhc
Q 016397 133 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL--TNGN-VIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 133 ~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~--~~g~-~~~ad~VI~a~p~~-~~~~ll 195 (390)
.+.+.|.+.+.+ .|++|+.+++|+++..++ +.+++|.+ .+|+ +++||.||.|.... .+.+.+
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~ 175 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA 175 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence 456677776655 478999999999999864 44544544 3564 78999999998764 444544
No 74
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=96.61 E-value=0.15 Score=46.55 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=48.4
Q ss_pred hHHHHHHHHHcCcEEEcCceeeEEEEC-CCCCEEEEEEcCCeEEEcCEEEEecChhhHhhhcCc
Q 016397 135 CLPIVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 197 (390)
Q Consensus 135 ~~~l~~~l~~~G~~I~l~~~V~~I~~~-~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~ll~~ 197 (390)
..++...++.+|+.++-+..|+.+... +++...+|.|.+|..+.|+.+|+|+.++.. ++|+.
T Consensus 156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~~ 218 (399)
T KOG2820|consen 156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLPT 218 (399)
T ss_pred HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcCc
Confidence 456677778899999999999999853 233344688999988999999999998765 45554
No 75
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.58 E-value=0.004 Score=53.61 Aligned_cols=55 Identities=27% Similarity=0.366 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+.+-|.+.+++.+.+|+++++|++|..++++ + .|++.++++++||+||+|+...
T Consensus 83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w-~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 83 EVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-W-TVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHHTTGGEETS--EEEEEEETTT-E-EEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHHhhcCcccccCCEEEEEEEeccE-E-EEEEEecceeeeeeEEEeeecc
Confidence 46677777777888899999999999997666 4 4899888789999999999853
No 76
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.58 E-value=0.47 Score=45.16 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=103.1
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhhhcCcchhccHHHHHhhcC
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKL 211 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~~l 211 (390)
..+-+.+.+.+. .++.+++++.|++|..++++ + .|++++|++++|+.||-|.++... ... . .
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~-~-~v~~~~g~~i~a~~VvDa~g~~~~----~~~--~---------~ 148 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEETGDG-V-LVVLADGRTIRARVVVDARGPSSP----KAR--P---------L 148 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEecCce-E-EEEECCCCEEEeeEEEECCCcccc----ccc--c---------c
Confidence 356677777776 56789999999999986543 3 378889989999999999885432 110 0 0
Q ss_pred CCccEEEEEEEeCccccccCCceeecC--CCc-chhhhhcccccccccCCCCcEEEEEecCCCCCCCCCHHHHHHHHHHH
Q 016397 212 VGVPVINIHIWFDRKLKNTYDHLLFSR--SSL-LSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKE 288 (390)
Q Consensus 212 ~~~~~~~v~l~~~~~~~~~~~~~~~~~--~~~-~~~~~~~s~~~~~~a~~g~~ll~~~~~~~~~~~~~~~ee~~~~~~~~ 288 (390)
.+....-+.+.++++..+.....+.+- ... .+. .+...-| ..++.-+++.++.... ..++.+++.+.+.+.
T Consensus 149 ~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~--~F~Y~lP--~~~~~alvE~T~fs~~--~~~~~~~~~~~l~~~ 222 (374)
T PF05834_consen 149 GLQHFYGWEVETDEPVFDPDTATLMDFRVPQSADGP--SFLYVLP--FSEDRALVEETSFSPR--PALPEEELKARLRRY 222 (374)
T ss_pred ccceeEEEEEeccCCCCCCCceEEEEecccCCCCCc--eEEEEEE--cCCCeEEEEEEEEcCC--CCCCHHHHHHHHHHH
Confidence 011222234455555321111111110 000 000 0000001 1233456666543221 236788888888888
Q ss_pred HHHhCCCCccccccCceEEEEEEEEeCCc-eeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHH
Q 016397 289 LAKLFPDEISADQSKAKIVKYHVVKTPRS-VYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQA 367 (390)
Q Consensus 289 l~~~~p~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~ 367 (390)
+++ .+.. .+.+.+...+ .|....+. . ....+++...|+....-+| +...++....+.|++
T Consensus 223 l~~-~g~~-----------~~~i~~~E~G~IPm~~~~~---~---~~~~~~v~~iG~agG~v~P-sTGYs~~~~~~~a~~ 283 (374)
T PF05834_consen 223 LER-LGID-----------DYEILEEERGVIPMTTGGF---P---PRFGQRVIRIGTAGGMVKP-STGYSFARIQRQADA 283 (374)
T ss_pred HHH-cCCC-----------ceeEEEeecceeecccCCC---c---cccCCCeeeEEccccCCCC-cccHHHHHHHHHHHH
Confidence 888 4432 1223333233 23311111 0 1112357777755444444 345667777777776
Q ss_pred HHHHhh
Q 016397 368 IVQDYV 373 (390)
Q Consensus 368 il~~~~ 373 (390)
|.+.+.
T Consensus 284 ia~~l~ 289 (374)
T PF05834_consen 284 IADALA 289 (374)
T ss_pred HHHHHh
Confidence 666554
No 77
>PRK06184 hypothetical protein; Provisional
Probab=96.56 E-value=0.23 Score=49.29 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=44.8
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE---cCCeEEEcCEEEEecChhh-Hhhhc
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGNVIDGDAYVFATPVDI-LKLQL 195 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~~~~ad~VI~a~p~~~-~~~ll 195 (390)
+-+.|.+.+.+.|++|+++++|++|+.++++ ++ +++ .++++++||.||.|..... +.+.+
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~l 174 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADG-VT-ARVAGPAGEETVRARYLVGADGGRSFVRKAL 174 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-EE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhC
Confidence 4456777777789999999999999986555 53 555 4567899999999987753 44444
No 78
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.54 E-value=0.11 Score=53.54 Aligned_cols=65 Identities=17% Similarity=0.309 Sum_probs=48.6
Q ss_pred EEeecCCC--CccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 123 MAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 123 ~~~~~GG~--~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
+.++.+|+ ...+.+.|.+.+++ |++|+.+++|++|..++ +.++ |.+.+|..+++|.||+|+....
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~-~~~~-v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERED-DGWQ-LDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC-CEEE-EEECCCcEEECCEEEECCCCCc
Confidence 44566653 13566777777777 89999999999999854 4453 7777777778999999988754
No 79
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.45 E-value=0.0088 Score=57.11 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=50.9
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC--eEEEcCEEEEecChhhHhhhc
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDILKLQL 195 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~~~~~~ll 195 (390)
.+|.++|.+.++++|++|..+++|+++..+ +++++.|.+.++ ..++||+||+|+.......|+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~ 327 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLV 327 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHHH
Confidence 478899999999999999999999999985 455766776665 479999999998776444443
No 80
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.44 E-value=0.24 Score=47.70 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=45.1
Q ss_pred chHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhhc
Q 016397 134 LCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 134 l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
+-+.|.+.+.+ .|++|+++++|++|..++++ + .|++.+|++++||.||.|...+ .+.+.+
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~lvIgADG~~S~vR~~~ 174 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESE-A-WLTLDNGQALTAKLVVGADGANSWLRRQM 174 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-E-EEEECCCCEEEeCEEEEeCCCCChhHHHc
Confidence 44566666655 36899999999999886444 5 4788889899999999998863 444444
No 81
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.41 E-value=0.011 Score=57.59 Aligned_cols=63 Identities=29% Similarity=0.336 Sum_probs=49.9
Q ss_pred eecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECC-CCCEEEEEEcC-CeEEEcCEEEEecCh
Q 016397 125 FLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTN-GNVIDGDAYVFATPV 188 (390)
Q Consensus 125 ~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~-~g~v~~V~~~~-g~~~~ad~VI~a~p~ 188 (390)
++.++. ..+.+.|.+.+++.|++|+++++|++|..++ ++++++|...+ +..+.++.||+|+..
T Consensus 117 ~~~~~g-~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 117 FLRGGG-KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred eecCCH-HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 454442 6799999999999999999999999999853 56676776543 357899999999873
No 82
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.39 E-value=0.17 Score=48.80 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHc-CcEEEcCceeeEEEECCCCCEEEEEEcC-C--eEEEcCEEEEecChh-hHhhhc
Q 016397 133 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN-G--NVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 133 ~l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~V~~~~-g--~~~~ad~VI~a~p~~-~~~~ll 195 (390)
.+.+.|.+.+.+. |++|+++++|++|+.++++ + .|++.+ + .+++||.||.|.... .+.+.+
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~-~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~ 187 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-A-TVTLEIEGKQQTLQSKLVVAADGARSPIRQAA 187 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-e-EEEEccCCcceEEeeeEEEEeCCCCchhHHHh
Confidence 4566777766654 6899999999999886444 4 366653 2 368999999998763 343433
No 83
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.38 E-value=0.27 Score=47.08 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=41.2
Q ss_pred chHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 134 LCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 134 l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
+-+.|.+.+.+ .|++|+.+++|++|..++++ + .|++.+|.++++|.||.|....
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGS-V-RVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCC
Confidence 44556666654 47899999999999875444 5 3778788889999999998764
No 84
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.32 E-value=0.52 Score=48.18 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECC-CCCEEEEEEc---CCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLT---NGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~-~g~v~~V~~~---~g~--~~~ad~VI~a~p~~ 189 (390)
..+...|++..++.|++|+.+++|++|..++ ++++++|++. +|+ ++.+|.||+|+.+.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaw 295 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPF 295 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHh
Confidence 3667778888888999999999999998854 4566666652 343 57999999998875
No 85
>PLN02697 lycopene epsilon cyclase
Probab=96.25 E-value=1.4 Score=43.86 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
.|.+.|.+.+.+.|+++ ++++|++|..++++ +..+.+.+|.+++|+.||.|.....
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 34466777777789988 78899999985444 4334556788899999999998865
No 86
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.22 E-value=0.58 Score=46.96 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=41.7
Q ss_pred HHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEEc--CC--eEEEcCEEEEecChh-hHhhhc
Q 016397 136 LPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 136 ~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~~--~g--~~~~ad~VI~a~p~~-~~~~ll 195 (390)
+.|.+.+.+ .|++|+.+++|++|+.++++ + .|++. +| ++++||.||-|.... .+.+.+
T Consensus 117 ~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v-~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~l 180 (538)
T PRK06183 117 AVLRAGLARFPHVRVRFGHEVTALTQDDDG-V-TVTLTDADGQRETVRARYVVGCDGANSFVRRTL 180 (538)
T ss_pred HHHHHHHHhCCCcEEEcCCEEEEEEEcCCe-E-EEEEEcCCCCEEEEEEEEEEecCCCchhHHHHc
Confidence 445555555 48999999999999987655 5 36664 46 478999999988764 444555
No 87
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.20 E-value=0.014 Score=55.23 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=50.1
Q ss_pred EEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC-eEEEcCEEEEecChhh
Q 016397 123 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDI 190 (390)
Q Consensus 123 ~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g-~~~~ad~VI~a~p~~~ 190 (390)
..||.-.-++.+++.|.+.+++.|++|+++++|++|. +++ + .|.+.++ +.++||+||+|+....
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~-~-~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT-L-RFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc-E-EEEECCCceEEecCEEEEcCCCcc
Confidence 4588544468999999999999999999999999992 233 4 4666433 5699999999998644
No 88
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=96.18 E-value=0.43 Score=45.47 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=47.7
Q ss_pred EeecCCCC--ccchHHHHHHHHHcC-cEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 124 AFLDGNPP--ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 124 ~~~~GG~~--~~l~~~l~~~l~~~G-~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
.++.+|.- ..+...|++.++++| ..+..+++|+.+..+ . .+.+|.+.+|+ +.||.||+|+....
T Consensus 146 ~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 146 FDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 34554431 256778888888889 567779999999984 2 34468888776 99999999998754
No 89
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.15 E-value=0.7 Score=44.26 Aligned_cols=62 Identities=13% Similarity=0.224 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEE-CCCCCEEEEEE-cCCe--EEEcCEEEEecChh-hHhhhcC
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIEL-NDDGTVKNFLL-TNGN--VIDGDAYVFATPVD-ILKLQLP 196 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~-~~~g~v~~V~~-~~g~--~~~ad~VI~a~p~~-~~~~ll~ 196 (390)
.+.+.|.+...+.|++++++++|++|.. ++++ + .|++ .+|+ +++||.||-|-..+ .+.+.++
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~-~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~ 170 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDR-P-YVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIP 170 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-e-EEEEEcCCeEEEEEeCEEEECCCCCCchhhhcC
Confidence 4556676666678999999999999986 3333 3 3665 4664 68899999887764 4455553
No 90
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.06 E-value=0.51 Score=45.11 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=44.2
Q ss_pred chHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhhc
Q 016397 134 LCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 134 l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
|-..|.+.+.+ .|++|+.+++|++++.++++ + .|++.+|+++++|.||.|.... .+.+.+
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvIgADG~~S~vR~~~ 173 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLESGAEIEAKWVIGADGANSQVRQLA 173 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECCCCEEEeeEEEEecCCCchhHHhc
Confidence 33455555554 36899999999999986555 5 3888899899999999998774 334433
No 91
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.05 E-value=0.12 Score=48.23 Aligned_cols=63 Identities=30% Similarity=0.371 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEE-EEEc-CC--eEEEcCEEEEecChh-hHhhhcC
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKN-FLLT-NG--NVIDGDAYVFATPVD-ILKLQLP 196 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~-V~~~-~g--~~~~ad~VI~a~p~~-~~~~ll~ 196 (390)
.+-+.|.+.+++.|++|+.+++|+++..++++ ++. +... +| ++++||.||-|-... .+.+.+.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~-~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDG-VTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTE-EEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccc-cccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 35566777778889999999999999987554 421 2222 34 268999999997764 4555544
No 92
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.04 E-value=0.34 Score=47.24 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=45.4
Q ss_pred cchHHHHHHHHHcC---cEEEcCceeeEEEEC-----C-CCCEEEEEEcCCeEEEcCEEEEecChh-hHhhhc
Q 016397 133 RLCLPIVEHIQSLG---GEVRLNSRVQKIELN-----D-DGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 133 ~l~~~l~~~l~~~G---~~I~l~~~V~~I~~~-----~-~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
.|.+.|.+.+.+.+ ++|+++++|++|+.+ + +..+ .|++.+|++++||.||-|-... .+.+.+
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v-~v~~~~g~~i~a~llVgADG~~S~vR~~~ 189 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV-HITLSDGQVLYTKLLIGADGSNSNVRKAA 189 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce-EEEEcCCCEEEeeEEEEecCCCChhHHHc
Confidence 35566777777665 799999999999752 1 2235 4788889999999999997764 444444
No 93
>PRK06996 hypothetical protein; Provisional
Probab=96.02 E-value=0.38 Score=46.22 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=45.7
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC---eEEEcCEEEEecCh--hhHhhhc
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPV--DILKLQL 195 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g---~~~~ad~VI~a~p~--~~~~~ll 195 (390)
.|-+.|.+.+++.|++++.+++|++|+.++++ + .|++.+| ++++||.||-|-.. ....+.+
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v-~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADG-V-TLALGTPQGARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-E-EEEECCCCcceEEeeeEEEECCCCCchHHHHHc
Confidence 46677888888889999999999999886555 4 3666654 58999999999663 4444443
No 94
>PRK08013 oxidoreductase; Provisional
Probab=96.01 E-value=0.59 Score=44.93 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=46.2
Q ss_pred cchHHHHHHHHHc-CcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhhc
Q 016397 133 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 133 ~l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
.|-+.|.+.+++. |++|+++++|++|+.++++ + .|++.+|++++||.||-|-..+ .+.+.+
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~i~a~lvVgADG~~S~vR~~~ 174 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENE-A-FLTLKDGSMLTARLVVGADGANSWLRNKA 174 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-E-EEEEcCCCEEEeeEEEEeCCCCcHHHHHc
Confidence 3556677777664 7899999999999886554 5 3777889899999999998764 444544
No 95
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.094 Score=48.98 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=99.4
Q ss_pred CCChhhHHHHHcCCCCCCHHHHHHhhhhhHHHHhcc-----ccccccccCccHHHHHHHcCCChHHHHHHHHHHHHhccC
Q 016397 22 PAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGG-----QAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNF 96 (390)
Q Consensus 22 ~~P~~~~~~ll~~~~~ls~~~k~r~~~~~~~~~~~~-----~~~~~~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~ 96 (390)
+.|=+- .+++++ ..|+.-+|-.+.+++ .+...+ .....+..+.++.|||+..++++.+ +.++---.+.
T Consensus 176 ~VPcSR-advFns-k~LTivEKr~LMKFl-tfc~~y~tEk~~~~~~~~~e~~F~EyL~~~rltp~l-qs~vl~aIaM--- 248 (547)
T KOG4405|consen 176 QVPCSR-ADVFNS-KSLTIVEKRMLMKFL-TFCQEYLTEKDPDEYVEFRERPFSEYLKTMRLTPKL-QSIVLHAIAM--- 248 (547)
T ss_pred ecCchH-Hhhhcc-cchhHHHHHHHHHHH-HHHHHhhhccCcHHHHHhhcCcHHHHHHhcCCChhh-HHHHHHHHHh---
Confidence 445444 489888 799999995555433 332222 1234456788999999999898855 4344332222
Q ss_pred CCcccccHHHHHHHHHHHhcc--c-CCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCC-CEEEEEEc
Q 016397 97 INPDELSMQCILIALNRFLQE--K-HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLT 172 (390)
Q Consensus 97 ~~~~~~Sa~~~~~~l~~~~~~--~-~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g-~v~~V~~~ 172 (390)
.+.++.++..-+....+|+.. + ....|.||-=|- +.|++.+.+...=-|+-.-|+.+|+.|..+.+. .++.+...
T Consensus 249 ~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGq-GELpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s 327 (547)
T KOG4405|consen 249 LSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQ-GELPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDS 327 (547)
T ss_pred cCcccccHHHHHHHHHHHHHHhhccCCCcceeeccCC-CcchHHHHHHHHHhcceEEeccchhheeecccccchhhhHhh
Confidence 244556766666666666531 2 224578887674 689999988766679989999999999985322 11112223
Q ss_pred CCeEEEcCEEEEe
Q 016397 173 NGNVIDGDAYVFA 185 (390)
Q Consensus 173 ~g~~~~ad~VI~a 185 (390)
.|+.+.+.++|++
T Consensus 328 ~g~ri~~k~~v~s 340 (547)
T KOG4405|consen 328 FGQRINAKNFVVS 340 (547)
T ss_pred hcchhcceeeeec
Confidence 5666777776664
No 96
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.93 E-value=0.69 Score=44.00 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHcC-cEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh-hHhhhc
Q 016397 133 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 133 ~l~~~l~~~l~~~G-~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
.|-+.|.+.+.+.+ .+++.+++|++|..++++ + .|.+.++ +++||.||-|-..+ .+.+.+
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~~-~~~adlvIgADG~~S~vR~~l 166 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDDK-QIKCNLLIICDGANSKVRSHY 166 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcCC-EEeeCEEEEeCCCCchhHHhc
Confidence 46677777777655 789999999999886554 5 3777666 89999999998764 444444
No 97
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.098 Score=48.28 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=93.4
Q ss_pred CCCChhhHHHHHcCCCCCCHHHHHHhhhhhHHHHhccc---ccccccc-CccHHHHHH-HcCCChHHHHHHHHHHHHhcc
Q 016397 21 LPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQ---AYVEAQD-GLTVQEWMR-KQGVPDRVTTEVFIAMSKALN 95 (390)
Q Consensus 21 ~~~P~~~~~~ll~~~~~ls~~~k~r~~~~~~~~~~~~~---~~~~~~d-~~s~~e~l~-~~g~~~~~~~~~~~p~~~~~~ 95 (390)
.+.|-+-. +++.+ ++||+.+|-++.+.+-.. ..+. ..++++. +.++.+++. .+|++.+..+.+.-.++-.+
T Consensus 118 ~kVP~ne~-ei~~s-~~lsL~eKr~vmrFl~~V-~n~~~~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l- 193 (434)
T COG5044 118 YKVPYNEA-EIFTS-PLLSLFEKRRVMRFLKWV-SNYAEQKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL- 193 (434)
T ss_pred EECCccHH-hhhcC-CCcchhhHHHHHHHHHHH-HhHHhhhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc-
Confidence 35555555 88878 999999998887765321 1111 1234433 244555555 46676655553333332222
Q ss_pred CCCcccccHHHHHHHHHHHhcc--cCC-ceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc
Q 016397 96 FINPDELSMQCILIALNRFLQE--KHG-SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT 172 (390)
Q Consensus 96 ~~~~~~~Sa~~~~~~l~~~~~~--~~~-~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~ 172 (390)
+ -+..+...+..+.+++++ ..| ..+.||+-|. ..|++-+++.-.-.|+++.+|+++.+|....+ |.+|..
T Consensus 194 --d-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~YGl-~El~QGFaRssav~GgtymLn~~i~ein~tk~--v~~v~~- 266 (434)
T COG5044 194 --D-LDIPAREALERILRYMRSFGDYGKSPYLYPRYGL-GELSQGFARSSAVYGGTYMLNQAIDEINETKD--VETVDK- 266 (434)
T ss_pred --c-ccCCchHHHHHHHHHHHhhcccCCCcceeeccCc-hhhhHHHHHhhhccCceeecCcchhhhccccc--eeeeec-
Confidence 2 356666776666554432 112 3467887776 68999998766557999999999999987422 323332
Q ss_pred CCeEEEcCEEEEe
Q 016397 173 NGNVIDGDAYVFA 185 (390)
Q Consensus 173 ~g~~~~ad~VI~a 185 (390)
++.++.|..||..
T Consensus 267 ~~~~~ka~KiI~~ 279 (434)
T COG5044 267 GSLTQKAGKIISS 279 (434)
T ss_pred CcceeecCcccCC
Confidence 3456778887764
No 98
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=95.59 E-value=0.041 Score=54.24 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHH----cC--cEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhH
Q 016397 132 ERLCLPIVEHIQS----LG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 191 (390)
Q Consensus 132 ~~l~~~l~~~l~~----~G--~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~ 191 (390)
..+...|++.+++ .| ++|+++++|++|..++++.+ .|++.+| ++.||.||+|+..+..
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~-~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLY-KIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeE-EEEECCC-EEEeCEEEECcChhHH
Confidence 3577888888887 77 67999999999998534433 5788777 6999999999887553
No 99
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.53 E-value=0.037 Score=53.52 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc---CCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~ 189 (390)
..+.+.|.+.+++.|++|+++++|+++..+ +++|++|... +|+ .+.|++||+|+.-.
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~ 202 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGF 202 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----B
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcc
Confidence 568899999999999999999999999995 6788888876 454 57899999998753
No 100
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.45 E-value=0.039 Score=39.67 Aligned_cols=41 Identities=32% Similarity=0.466 Sum_probs=34.8
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG 174 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g 174 (390)
..+.+.+.+.+++.|++|++++.|++|..++++ ++ |+++||
T Consensus 40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~g 80 (80)
T PF00070_consen 40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEETS
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEecC
Confidence 455677788888999999999999999998777 76 888886
No 101
>PRK06126 hypothetical protein; Provisional
Probab=95.44 E-value=2.1 Score=42.99 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=40.2
Q ss_pred hHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEEc---CCe--EEEcCEEEEecChh-hHhhhc
Q 016397 135 CLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 135 ~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~-~~~~ll 195 (390)
-+.|.+.+++ .|++|+++++|++|..++++ ++ +++. +|+ ++++|.||.|.... .+.+.+
T Consensus 129 ~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~l 194 (545)
T PRK06126 129 EPILLEHAAAQPGVTLRYGHRLTDFEQDADG-VT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSL 194 (545)
T ss_pred HHHHHHHHHhCCCceEEeccEEEEEEECCCe-EE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhc
Confidence 3445555554 47899999999999986544 43 4442 353 68999999998764 344444
No 102
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.43 E-value=2.1 Score=43.05 Aligned_cols=59 Identities=25% Similarity=0.370 Sum_probs=40.8
Q ss_pred HHHHHHHHHc-CcEEEcCceeeEEEECCCCCEEEEEE--cCCe-EEEcCEEEEecChh-hHhhhcC
Q 016397 136 LPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL--TNGN-VIDGDAYVFATPVD-ILKLQLP 196 (390)
Q Consensus 136 ~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~V~~--~~g~-~~~ad~VI~a~p~~-~~~~ll~ 196 (390)
+.|.+.+.+. |++|+++++|++++.++++ ++ +++ .+|+ ++++|.||.|.... .+.+++.
T Consensus 129 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-v~-v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 129 GYLVERAQALPNIDLRWKNKVTGLEQHDDG-VT-LTVETPDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEEcCCE-EE-EEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 4456666554 6899999999999986554 42 433 3453 68999999998764 4555543
No 103
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.42 E-value=3.6 Score=42.19 Aligned_cols=61 Identities=11% Similarity=0.201 Sum_probs=42.2
Q ss_pred chHHHHHHHHHcCc--EEEcCceeeEEEECCCC--CEEEEEEc------CC--eEEEcCEEEEecCh-hhHhhhc
Q 016397 134 LCLPIVEHIQSLGG--EVRLNSRVQKIELNDDG--TVKNFLLT------NG--NVIDGDAYVFATPV-DILKLQL 195 (390)
Q Consensus 134 l~~~l~~~l~~~G~--~I~l~~~V~~I~~~~~g--~v~~V~~~------~g--~~~~ad~VI~a~p~-~~~~~ll 195 (390)
+-+.|.+.+.+.|+ +++.+++|++++.++++ .| .|++. +| ++++||.||-|-.. ..+.+.+
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V-~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~l 216 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPV-TVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAI 216 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCE-EEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhc
Confidence 44556777766664 78999999999886432 34 35553 35 57899999998776 4555555
No 104
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=95.27 E-value=0.058 Score=53.17 Aligned_cols=67 Identities=12% Similarity=0.173 Sum_probs=47.6
Q ss_pred EEeecCCC--CccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE---cCC--eEEEcCEEEEecChhh
Q 016397 123 MAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPVDI 190 (390)
Q Consensus 123 ~~~~~GG~--~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g--~~~~ad~VI~a~p~~~ 190 (390)
+..+.+|. ...+..+|.+.+++.|++|+++++|++|..++++.++ |++ .+| .+++||+||+|+....
T Consensus 167 l~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 167 NWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred EEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcch
Confidence 34555541 1467788888888889999999999999985444342 433 234 3689999999888644
No 105
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.20 E-value=0.053 Score=52.00 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=49.1
Q ss_pred EEeecCCC--CccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 123 MAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 123 ~~~~~GG~--~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
+.++.+|. ...+.++|.+.+++.|++|+++++|++|..++ +.+ .|.+.+| ++.+|.||+|+....
T Consensus 138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcch
Confidence 34455442 24677888888888999999999999998754 335 4777666 699999999988753
No 106
>PRK05868 hypothetical protein; Validated
Probab=95.16 E-value=2.3 Score=40.48 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=38.6
Q ss_pred cCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh-hhHhhhc
Q 016397 145 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV-DILKLQL 195 (390)
Q Consensus 145 ~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~-~~~~~ll 195 (390)
.|.+|+++++|++|+.++ +.+ .|++.||+++++|.||-|-.. ..+.+.+
T Consensus 117 ~~v~i~~~~~v~~i~~~~-~~v-~v~~~dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDG-DSV-RVTFERAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred CCcEEEeCCEEEEEEecC-CeE-EEEECCCCeEEeCEEEECCCCCchHHHHh
Confidence 578999999999998754 446 488889988999999998776 4555544
No 107
>PRK07121 hypothetical protein; Validated
Probab=95.15 E-value=0.061 Score=53.28 Aligned_cols=57 Identities=25% Similarity=0.418 Sum_probs=47.0
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC-Ce--EEEc-CEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDG-DAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~-g~--~~~a-d~VI~a~p~ 188 (390)
..+.+.|.+.+++.|++|+++++|++|..+++|++++|...+ |+ .+.+ +.||+|+..
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 578899999999999999999999999986566787877643 32 5778 999999875
No 108
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.09 E-value=0.065 Score=54.20 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC-Ce--EEEcC-EEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGD-AYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~-g~--~~~ad-~VI~a~p~ 188 (390)
..++..|.+.+++.|++|+++++|++|..+++|+|++|...+ |+ .+.|+ .||+|+..
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGG 273 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGG 273 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCc
Confidence 568888888888899999999999999997678888886643 43 46786 69998865
No 109
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=95.03 E-value=0.082 Score=52.26 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=44.4
Q ss_pred ccchHHHHHHHHHcC-cEEEcCceeeEEEECCCCCEEEEEEc---CCe--EEEcCEEEEecChhh
Q 016397 132 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 190 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G-~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~~ 190 (390)
..+.++|.+.+++.| ++|+++++|++|..++++.++ |.+. +|+ +++|++||+++....
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEcCCCceEEEEcCEEEECCCcch
Confidence 367888888888877 699999999999986565442 4432 353 689999999888754
No 110
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.01 E-value=0.084 Score=50.91 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCe--EEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~--~~~ad~VI~a~p~~ 189 (390)
.+.+.|.+.+++.|++|+++++|+++..+ ++.++.+...+|+ .+++|.||+|+...
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 67888999998999999999999999985 4446545555553 58999999998753
No 111
>PRK06116 glutathione reductase; Validated
Probab=94.95 E-value=0.081 Score=51.76 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=45.4
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
..+.+.+.+.+++.|++|+++++|++|..++++.+ .|++.+|+++.+|.||+++..
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCC
Confidence 34567788888899999999999999997545534 377778888999999999864
No 112
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=94.94 E-value=0.07 Score=52.04 Aligned_cols=57 Identities=25% Similarity=0.351 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc--CCe--EEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~--~g~--~~~ad~VI~a~p~ 188 (390)
..+.+.|.+.+++.|++|+++++|++|..++++++++|++. +++ .+.++.||+|+..
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence 35888999999999999999999999998656677677654 343 4678999999874
No 113
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.93 E-value=0.069 Score=53.72 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=47.0
Q ss_pred ecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc-CCe--EEEc-CEEEEecCh
Q 016397 126 LDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDG-DAYVFATPV 188 (390)
Q Consensus 126 ~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~--~~~a-d~VI~a~p~ 188 (390)
..+| +.|+.+|.+.+++.|++|+++++|+++..+ +|+|++|... +|+ .+.+ +.||+|+.-
T Consensus 213 ~~~G--~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~a~kaVILAtGG 276 (564)
T PRK12845 213 AAGG--QALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDHRGREVTVTARRGVVLAAGG 276 (564)
T ss_pred cCCh--HHHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEECCcEEEEEcCCEEEEecCC
Confidence 3455 689999999999999999999999999874 6778888553 343 3556 589998864
No 114
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=94.88 E-value=0.09 Score=51.70 Aligned_cols=56 Identities=27% Similarity=0.353 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc--CC--eEEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~--~g--~~~~ad~VI~a~p~ 188 (390)
..+.+.|.+.+++.|++|+++++|++|..+ ++++++|.+. +| ..+.++.||+|+..
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 578999999999999999999999999985 5677777763 33 36789999999864
No 115
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.88 E-value=0.099 Score=52.74 Aligned_cols=58 Identities=21% Similarity=0.159 Sum_probs=48.1
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE---cCCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 189 (390)
..|...|.+.+.+.|++|..++.++++..+++|+|++|.. .+|+ .+.|++||+|+...
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 188 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGA 188 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCc
Confidence 5788999988888899999999999999865778888865 3564 57899999998763
No 116
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=94.83 E-value=0.077 Score=51.03 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=48.7
Q ss_pred eecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 125 FLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 125 ~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
||.......+.+.|.+.+++.|++|+++++|++|..+ ++.+ .|++ +++++.+|.||+|+....
T Consensus 98 ~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~-~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 98 FPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DNGF-GVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCeE-EEEE-CCcEEEcCEEEECCCCcc
Confidence 5543323678899999999999999999999999875 3434 4666 566799999999998643
No 117
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.79 E-value=0.099 Score=49.78 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=42.6
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+...|.+.+++.|++++.+++|++|..+ ++.+ .|++.+| ++.+|.||+|+...
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcc
Confidence 45667777777889999999999999985 4445 4777666 68999999988764
No 118
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=94.71 E-value=0.12 Score=46.43 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=45.2
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC-----------CeEEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-----------GNVIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~-----------g~~~~ad~VI~a~p~~ 189 (390)
..+...|.+...+.|++|++++.|+.|..++++++.+|.+.. ..+++|+.||.|+..+
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 467788888888899999999999999875554666666531 2468999999998753
No 119
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=94.70 E-value=0.094 Score=52.65 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc---CC--eEEEcCEEEEecChhh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDI 190 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~---~g--~~~~ad~VI~a~p~~~ 190 (390)
++..+++....++|++|+.+++|++|..+ ++++++|++. +| .+++||.||.|+.+..
T Consensus 150 rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 150 RLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 45566667777899999999999999985 4556667653 23 3689999999988753
No 120
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=94.67 E-value=0.11 Score=42.84 Aligned_cols=41 Identities=34% Similarity=0.474 Sum_probs=32.1
Q ss_pred CcEE-EcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 146 GGEV-RLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 146 G~~I-~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
|.+| +...+|+.|...+++ . .|.+.+|..+.+|+||+|+..
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~-~-~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDG-Y-RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCc-E-EEEECCCCEEEeCEEEECCCC
Confidence 4443 357799999997666 3 478889999999999999864
No 121
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.49 E-value=0.11 Score=51.82 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc---CC--eEEEcCEEEEecChhh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDI 190 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~---~g--~~~~ad~VI~a~p~~~ 190 (390)
..+...+++...++|++|+.+++|++|..+ ++++++|++. +| .++.|+.||.|+.+..
T Consensus 128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 128 FRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 356677777788899999999999999985 4556566653 34 3689999999988753
No 122
>PRK11445 putative oxidoreductase; Provisional
Probab=94.44 E-value=4.5 Score=38.11 Aligned_cols=44 Identities=30% Similarity=0.264 Sum_probs=34.2
Q ss_pred HcCcEEEcCceeeEEEECCCCCEEEEEE-cCCe--EEEcCEEEEecChh
Q 016397 144 SLGGEVRLNSRVQKIELNDDGTVKNFLL-TNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 144 ~~G~~I~l~~~V~~I~~~~~g~v~~V~~-~~g~--~~~ad~VI~a~p~~ 189 (390)
+.|++++.++.|++|..++++ + .|++ .+|+ +++||.||.|....
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDG-Y-HVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCE-E-EEEEecCCcEEEEEeCEEEECCCCC
Confidence 568999999999999986555 4 2554 4564 68999999998874
No 123
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.43 E-value=0.14 Score=52.02 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE---cCCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 189 (390)
..|...|.+.+++.|++|.+++.|+++..+++|+|++|.. .+|+ .+.|+.||+|+...
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 5688999988888899999999999999865577888765 3554 67899999998753
No 124
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.43 E-value=0.15 Score=51.48 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE---cCCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 189 (390)
..|...|.+.+++.|++|..+++|+++..+ +|+|++|.. .+|+ .+.|++||+|+...
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~ 180 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLATGGY 180 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeCeEEECCCCc
Confidence 578999999888899999999999999984 678888765 2454 57899999998763
No 125
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=94.40 E-value=0.11 Score=52.66 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc--CCe-EEEc-CEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VIDG-DAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~--~g~-~~~a-d~VI~a~p~~ 189 (390)
..|+..|.+.+++.|++|+++++|++|..+ ++++++|.+. ++. .+.+ +.||+|+...
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~ 277 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGF 277 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCc
Confidence 468889999999999999999999999875 5677777653 332 5788 9999988654
No 126
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.33 E-value=0.093 Score=49.91 Aligned_cols=52 Identities=33% Similarity=0.478 Sum_probs=42.9
Q ss_pred CccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCe-EEEcCEEEEecCh
Q 016397 131 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-VIDGDAYVFATPV 188 (390)
Q Consensus 131 ~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~-~~~ad~VI~a~p~ 188 (390)
...+.+...+.|+++|++|+++++|++|+. ++ |++.+|+ ++.++.||.|+..
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~----v~~~~g~~~I~~~tvvWaaGv 260 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTP--DG----VTLKDGEEEIPADTVVWAAGV 260 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECC--Cc----EEEccCCeeEecCEEEEcCCC
Confidence 356667777888999999999999999986 34 5677777 4999999999865
No 127
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.27 E-value=0.099 Score=49.92 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=52.4
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhhh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 194 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~l 194 (390)
..+.+.+.++++.+|+++++++.|.+++.+++|++..|.+.+|+++.||.||+-+...-..++
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~ 317 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSF 317 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccc
Confidence 345566778888999999999999999998889888899999999999999998776433333
No 128
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=94.15 E-value=0.17 Score=49.96 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=42.6
Q ss_pred ccchHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEE---EcCCe--EEEcCEEEEecChhh
Q 016397 132 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDI 190 (390)
Q Consensus 132 ~~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~---~~~g~--~~~ad~VI~a~p~~~ 190 (390)
..+.++|.+.+.+ .|++|+++++|+.|..++++.++ |+ +.+|+ +++||.||+|+....
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcch
Confidence 3567788887754 58999999999999986344342 44 33452 689999999988765
No 129
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=94.12 E-value=0.15 Score=50.69 Aligned_cols=54 Identities=24% Similarity=0.260 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc--CC--eEEEcCEEEEecC
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATP 187 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~--~g--~~~~ad~VI~a~p 187 (390)
.+.+.|.+.+++.|++|+++++|++|..+ ++++++|.+. +| .++.+|.||+|+.
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 57889999998999999999999999874 5667677653 33 3588999999986
No 130
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.09 E-value=0.19 Score=48.11 Aligned_cols=61 Identities=26% Similarity=0.306 Sum_probs=48.0
Q ss_pred ccchHHHHHHHHHc-CcEEEcCceeeEEEECCCCCEEEEEEc---CC--eEEEcCEEEEecChhhHhh
Q 016397 132 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDILKL 193 (390)
Q Consensus 132 ~~l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~V~~~---~g--~~~~ad~VI~a~p~~~~~~ 193 (390)
+.|.+.|.+.+.+. |.+++++++|+.|.+.+||.+ .|.+. +| .+++|+.|++.....++.-
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~L 247 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAGGGALPL 247 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCchHhHHH
Confidence 57888898888876 899999999999999888854 36553 23 4789999999877665543
No 131
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.08 E-value=0.19 Score=50.94 Aligned_cols=58 Identities=17% Similarity=0.095 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE---cCCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 189 (390)
..|...|.+.+.+.|++|.+++.|+++..+++|+|++|.. .+|+ .+.|+.||+|+...
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 5788999888878899999999999999865678888865 2554 57899999998764
No 132
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.07 E-value=0.14 Score=48.65 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=41.9
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
+...+.+.+.+.|++|+++++|++|..++ +.+ .|++.+| ++.+|.||+|+....
T Consensus 151 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 151 AIKAHLRLAREAGAELLFNEPVTAIEADG-DGV-TVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEeeC-CeE-EEEeCCC-EEEeeEEEEecCcch
Confidence 44555566667899999999999999853 445 4777777 689999999998753
No 133
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=93.99 E-value=0.15 Score=51.67 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=45.3
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC-Ce--EEEc-CEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDG-DAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~-g~--~~~a-d~VI~a~p~ 188 (390)
..|.+.|.+.++++|++|+++++|+++..+ +++|++|.+.+ |+ .+.+ +.||+|+..
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg 280 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGG 280 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCC
Confidence 468899999999999999999999999874 67787887654 33 4676 689998865
No 134
>PRK06175 L-aspartate oxidase; Provisional
Probab=93.99 E-value=0.22 Score=48.51 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEE-EcCCe--EEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFL-LTNGN--VIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~-~~~g~--~~~ad~VI~a~p~ 188 (390)
..+.+.|.+.+++ .|++|+++++|++|..+ ++++.+|. ..+|+ .+.|+.||+|+..
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 4688888888765 48999999999999875 56666754 33454 5789999999875
No 135
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=93.97 E-value=0.33 Score=45.05 Aligned_cols=118 Identities=22% Similarity=0.380 Sum_probs=69.8
Q ss_pred cccccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHhcccCC----ceEEee-cCCCCccch
Q 016397 61 VEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG----SKMAFL-DGNPPERLC 135 (390)
Q Consensus 61 ~~~~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~----~~~~~~-~GG~~~~l~ 135 (390)
.+.+++.|++||+...-|.. +||-.+...+ +-. .=-|+-.+..++.+|+.+-.| +.+.+- -.-+ ++|+
T Consensus 158 EE~L~~~tI~d~Fse~FF~s----NFW~yW~tmF-AFe-kWhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQY-eSlv 230 (587)
T COG4716 158 EEKLDDLTIEDWFSEDFFKS----NFWYYWQTMF-AFE-KWHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQY-ESLV 230 (587)
T ss_pred HHhcCCccHHHhhhHhhhhh----hHHHHHHHHH-hhh-HHHHHHHHHHHHHHHHHHhcCCCcchhhcccccchH-HHHH
Confidence 46799999999999862333 3443332222 111 124555555555555432222 112222 2334 8899
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEECC-CCC-E-EEE-EEcCCeEEE--c-CEEEEe
Q 016397 136 LPIVEHIQSLGGEVRLNSRVQKIELND-DGT-V-KNF-LLTNGNVID--G-DAYVFA 185 (390)
Q Consensus 136 ~~l~~~l~~~G~~I~l~~~V~~I~~~~-~g~-v-~~V-~~~~g~~~~--a-d~VI~a 185 (390)
.+|...|+++|+++.+++.|+.|..+. .|+ + +.+ ...+++.++ - |-|++|
T Consensus 231 lPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvT 287 (587)
T COG4716 231 LPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVT 287 (587)
T ss_pred HHHHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEe
Confidence 999999999999999999999999854 232 1 112 234565543 3 566665
No 136
>PRK12839 hypothetical protein; Provisional
Probab=93.92 E-value=0.18 Score=50.86 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=44.9
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc--CCe-EE-EcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VI-DGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~--~g~-~~-~ad~VI~a~p~ 188 (390)
..|+..|.+.+++.|++|+++++|++|..+++|+|++|... +|+ .+ .++.||+|+..
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGG 274 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGG 274 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCC
Confidence 46888899888889999999999999987656788888653 343 23 45899998864
No 137
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=93.90 E-value=0.22 Score=50.58 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHH----cCcEEEcCceeeEEEECCCCCEEEEEEc---CCe--EEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQS----LGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~----~G~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~ 188 (390)
..+...|.+.+++ .|++|+++++|+++..+++|+|++|.+. +|+ .+.|+.||+|+.-
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 4677777666654 3799999999999998656678888764 353 5789999999865
No 138
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.84 E-value=2.6 Score=41.74 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=49.1
Q ss_pred eEEeecCCC-CccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC---Ce--EEEcCEEEEecChhh
Q 016397 122 KMAFLDGNP-PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDI 190 (390)
Q Consensus 122 ~~~~~~GG~-~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~---g~--~~~ad~VI~a~p~~~ 190 (390)
.+.|+.+-. ..+|.-..+....++|.+|...++|+++..+ ++ +++|++.| |+ +++|+.||.|+.+..
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccH
Confidence 355665432 1355566666667899999999999999995 55 77888765 32 578999999987754
No 139
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=93.79 E-value=7.3 Score=38.15 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=30.9
Q ss_pred CCCeEEecccccCCCC---CchhHHHHHHHHHHHHHHHHh
Q 016397 336 VEGFYLAGDYTKQKYL---ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 336 ~~~l~~aGd~~~~~~~---~~~~gA~~SG~~aA~~il~~~ 372 (390)
.+|+.++||..+.-.| .|+.-|+.||..||+.+.+.+
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~ 347 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGS 347 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 4689999998776555 589999999999999998654
No 140
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.77 E-value=0.17 Score=50.90 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc-CCe--EEEc-CEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDG-DAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~--~~~a-d~VI~a~p~ 188 (390)
..|...|.+.+++.|++|+++++|++|..+ +++|++|... +|+ .+.+ +.||+|+..
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG 267 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGG 267 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCC
Confidence 578999999999999999999999999985 6778887664 343 4678 479998864
No 141
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=93.75 E-value=0.21 Score=52.72 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=43.7
Q ss_pred hHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 135 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 135 ~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
.+.+.+.|+++|++|++++.|++|..++++....|.+.+|+++.+|.||++++.
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~ 243 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGI 243 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCc
Confidence 455778888999999999999999864333344578889999999999999875
No 142
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=93.64 E-value=0.19 Score=47.95 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=42.9
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
+.+.+.+.+++.|++|+++++|++|..++ +.+ .|.+.+|+++.+|.||+++..
T Consensus 185 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 185 VSSRLQHRLTEMGVHLLLKSQLQGLEKTD-SGI-RATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHHHHHHhCCCEEEECCeEEEEEccC-CEE-EEEEcCCcEEECCEEEECcCC
Confidence 44566777888999999999999999753 334 477888989999999999865
No 143
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=93.59 E-value=0.27 Score=50.11 Aligned_cols=57 Identities=11% Similarity=0.148 Sum_probs=46.5
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE---cCCe--EEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~ 188 (390)
..|...|.+.+++.|++|..+++|+++..+++|+|++|.. .+|+ .+.|+.||+|+..
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 4688899988888999999999999998755677888764 3464 5789999999865
No 144
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=93.58 E-value=0.24 Score=46.95 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=41.1
Q ss_pred chHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 134 LCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 134 l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
+...+.+.|++ .+.+| ....|+.|..+ ++++++|.+.+|+.+.+|.||+|+..
T Consensus 97 y~~~~~~~l~~~~nl~i-~~~~V~~l~~e-~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTI-IQGEVTDLIVE-NGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHTSTTEEE-EES-EEEEEEC-TTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHhcCCCeEE-EEcccceEEec-CCeEEEEEeCCCCEEecCEEEEeccc
Confidence 44556677776 44666 47899999985 67899999999999999999999887
No 145
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=93.51 E-value=0.25 Score=48.76 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
..+.+.+.+.|++.|.+|++++.|++|..++++.. .|++.+|+++.+|.||+++..
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~-~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSK-HVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceE-EEEEcCCCEEEcCEEEEeeCC
Confidence 44567788889899999999999999987544433 466777888999999998864
No 146
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=93.45 E-value=0.36 Score=43.25 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=44.6
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCC-CEEEEEEcC-----------CeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTN-----------GNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g-~v~~V~~~~-----------g~~~~ad~VI~a~p~~ 189 (390)
.+.+.|.+.+.+.|++|+.++.|+.|..++++ ++.+|.+.. ..+++|+.||.|+...
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 57788888888899999999999999985442 476776642 2368899999998853
No 147
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.32 E-value=0.23 Score=48.81 Aligned_cols=56 Identities=29% Similarity=0.456 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
..+.+.+.+.+++.|++|+++++|++|..++++ + .+++.+|+++++|.||+++...
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~-~-~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG-V-IVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe-E-EEEECCCCEEEeCEEEEeecCC
Confidence 345677888888899999999999999875443 4 3667778889999999998753
No 148
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=93.26 E-value=7.9 Score=36.96 Aligned_cols=36 Identities=28% Similarity=0.205 Sum_probs=30.5
Q ss_pred CCeEEecccccCCCC---CchhHHHHHHHHHHHHHHHHh
Q 016397 337 EGFYLAGDYTKQKYL---ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 337 ~~l~~aGd~~~~~~~---~~~~gA~~SG~~aA~~il~~~ 372 (390)
+|+.++||..+.-.| .|+.-|+.||..||+.|.+.+
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l 302 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYL 302 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 689999998776555 588999999999999998765
No 149
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=93.25 E-value=0.31 Score=47.70 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=43.8
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC-eEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g-~~~~ad~VI~a~p~~ 189 (390)
.+.+.+.+.|++.|+++++++.|++|..++++.+ .|++.+| +.+.+|.||+++...
T Consensus 208 ~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 208 MISETITEEYEKEGINVHKLSKPVKVEKTVEGKL-VIHFEDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceE-EEEECCCcEEEEcCEEEEeeCCC
Confidence 4566777888889999999999999987544434 3677777 578999999998753
No 150
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.20 E-value=0.37 Score=48.90 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc---CCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~ 189 (390)
..|...|.+.+.+.|++|..++.|+++..+++|++.+|.+. +|+ .+.++.||+|+...
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 210 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGA 210 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCc
Confidence 56888898888888999999999999998656777787652 454 57899999998763
No 151
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=93.15 E-value=0.26 Score=48.18 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.|++.|++++++++|++|..++++ + .|++.+|+++.+|.||+|+..
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~-~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 208 DMRALLARNMEGRGIRIHPQTSLTSITKTDDG-L-KVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-E-EEEEcCCcEeecCEEEEeeCC
Confidence 44556777788899999999999999875444 4 366777888999999999875
No 152
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.15 E-value=0.39 Score=49.15 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc---CCe--EEEcCEEEEecCh
Q 016397 136 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPV 188 (390)
Q Consensus 136 ~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~ 188 (390)
+.|.+.+++.|++|++++.|+++..+ +|+|++|.+. +|+ .+.|+.||+|+.-
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 56666777889999999999999985 5778788764 453 5789999999876
No 153
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=93.14 E-value=0.24 Score=50.08 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC--Ce-EEEcC-EEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN-VIDGD-AYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~--g~-~~~ad-~VI~a~p~ 188 (390)
..|.+.|.+.+++.|++|+++++|++|..+ ++++++|.+.+ ++ .+.++ .||+|+..
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg 273 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGG 273 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCC
Confidence 468889999888999999999999999985 56777777654 32 46775 79998864
No 154
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=93.13 E-value=7.7 Score=37.12 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc-CCe--EEEcCEEEEecChh-hHhhhcC
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGDAYVFATPVD-ILKLQLP 196 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~--~~~ad~VI~a~p~~-~~~~ll~ 196 (390)
.+...|.+.+.+.|++++++++++++...++..+ +|++. +|+ ++++|.||-|-..+ .+.+.++
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~ 170 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRP-YVTFERDGERHRLDCDFIAGCDGFHGVSRASIP 170 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCcc-EEEEEECCeEEEEEeCEEEECCCCchhhHHhcC
Confidence 4556677777778899999999988865222223 46664 775 68999999887764 4555554
No 155
>PRK08275 putative oxidoreductase; Provisional
Probab=93.10 E-value=0.27 Score=49.48 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE---cCCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 189 (390)
..+.+.|.+.+++.|++|..++.|++|..++++++++|.. .+|+ .+.|+.||+|+...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 4688899998888999999999999999854667777764 3554 57899999998764
No 156
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.09 E-value=0.3 Score=49.10 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=45.7
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE---cCCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 189 (390)
..+.+.|.+.+++.|++|.+++.|+++..++++++++|.. .+|+ .+.|+.||+|+...
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 4688889888888899999999999999864444767654 3554 57899999998763
No 157
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.07 E-value=0.34 Score=49.11 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=46.8
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCC---CCEEEEEE---cCCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD---GTVKNFLL---TNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~---g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 189 (390)
..+.+.|.+.+++.|++|..++.|++|..+++ |++++|.. .+|+ .+.|+.||+|+...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 56888999988888999999999999987543 67878765 3454 57899999998764
No 158
>PLN02507 glutathione reductase
Probab=93.03 E-value=0.28 Score=48.68 Aligned_cols=55 Identities=13% Similarity=0.316 Sum_probs=43.6
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
..+.+.+.+.|++.|++|++++.|++|..++++ + .|.+.+|+++.+|.||+++..
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~-~-~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG-I-KVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe-E-EEEECCCcEEEcCEEEEeecC
Confidence 345566677888899999999999999874333 4 367777888999999999875
No 159
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=92.87 E-value=0.39 Score=48.55 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE---cCCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 189 (390)
..+...|.+.+++.|++|..++.|++|..+ +|++++|.. .+|+ .+.|+.||+|+...
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 468888988888889999999999999985 577777654 3564 57899999998764
No 160
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=92.86 E-value=0.29 Score=49.32 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=44.4
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc-CCe--EEEcC-EEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~--~~~ad-~VI~a~p~ 188 (390)
..+...|.+.+++.|++|+++++|++|..+ +++|++|... +|+ .+.++ .||+|+..
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG 267 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVE-DGRVTGVHAAESGEPQLIRARRGVILASGG 267 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEe-CCEEEEEEEEeCCcEEEEEeceeEEEccCC
Confidence 568888989998899999999999999985 5677777664 443 47785 69997764
No 161
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=92.77 E-value=9.6 Score=36.60 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=30.9
Q ss_pred CCeEEecccccCCCC---CchhHHHHHHHHHHHHHHHHh
Q 016397 337 EGFYLAGDYTKQKYL---ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 337 ~~l~~aGd~~~~~~~---~~~~gA~~SG~~aA~~il~~~ 372 (390)
+|+.++||..+.-.| .|+.-|+.||..||+.+.+.+
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~ 308 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEES 308 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 699999998877665 589999999999999998654
No 162
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.75 E-value=0.3 Score=47.95 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC---eEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g---~~~~ad~VI~a~p~~ 189 (390)
.+.+.+.+.+++.|++|+++++|++|..++ +.+ .+.+.+| +++.+|.||+++...
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-~~v-~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 214 EISKLAERALKKRGIKIKTGAKAKKVEQTD-DGV-TVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEE-EEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 456677788888999999999999999753 334 3666555 678999999998753
No 163
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.56 E-value=0.47 Score=48.03 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE---cCCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 189 (390)
..+.+.|.+.+++.|++|..++.|+++..+ +|++++|.. .+|+ .+.|+.||+|+...
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 578899999888889999999999999874 666767653 3554 57899999998764
No 164
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=92.54 E-value=0.44 Score=48.74 Aligned_cols=58 Identities=9% Similarity=0.131 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc---CCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~ 189 (390)
..|.+.|.+.+.+.|++|..++.|+++..+++|++.+|... +|+ .+.|+.||+|+...
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 46888998888888999999999999887546778787652 453 57899999998763
No 165
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.48 E-value=0.35 Score=47.58 Aligned_cols=54 Identities=26% Similarity=0.320 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.|++.|++|+++++|++|..++++ + .|.+.+|+++.+|.||+++..
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~-~-~v~~~~g~~l~~D~vl~a~G~ 272 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERTGDG-V-VVTLTDGRTVEGSHALMAVGS 272 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCE-E-EEEECCCcEEEecEEEEeecC
Confidence 34566777888899999999999999875443 5 366778888999999998765
No 166
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.42 E-value=0.3 Score=49.30 Aligned_cols=58 Identities=14% Similarity=-0.000 Sum_probs=46.9
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc---CCe--EEEcCEEEEecChhh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 190 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~~ 190 (390)
..+.+.|.+.+.+.|++|.+++.|+++..+ +|+|++|... +|+ .+.|+.||+|+....
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 468889988888889999999999999985 6788888764 333 578999999987643
No 167
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=92.42 E-value=0.42 Score=45.91 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=41.4
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
+.+.+.+.+++.|++|+++++|++|.. ++.+ .|++.+|+++.+|.||+++..
T Consensus 188 ~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~-~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 188 VQRYLLQRHQQAGVRILLNNAIEHVVD--GEKV-ELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEEc--CCEE-EEEECCCCEEECCEEEECCCC
Confidence 345566777789999999999999986 2334 477888988999999998875
No 168
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=92.41 E-value=0.32 Score=46.00 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=39.8
Q ss_pred cchHHHHHHHHHc-CcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 133 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 133 ~l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
.+...|++.+.+. |++|+.+++|++|+. + .|++.+|+ ++||.||+|+.+..
T Consensus 146 ~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g~-i~a~~VV~A~G~~s 197 (365)
T TIGR03364 146 EAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRGD-VHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCCc-EEeCEEEECCCCCh
Confidence 4567777777665 999999999999974 2 26676674 78999999998754
No 169
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.30 E-value=0.41 Score=43.66 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+.+.+.+.+++.|+++++ +.|++|+.++ +.+ .|++.+|+++.+|.||+|+...
T Consensus 58 ~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~-~~~-~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 58 ELMEKMKEQAVKFGAEIIY-EEVIKVDLSD-RPF-KVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHHcCCeEEE-EEEEEEEecC-Cee-EEEeCCCCEEEeCEEEECCCCC
Confidence 4667777778888999999 8999999853 334 3777777889999999999863
No 170
>PRK07804 L-aspartate oxidase; Provisional
Probab=92.22 E-value=0.38 Score=48.24 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=46.5
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc-------CC-eEEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-------NG-NVIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~-------~g-~~~~ad~VI~a~p~~ 189 (390)
..+.+.|.+.+++.|++|+.++.|++|..+++|++++|.+. ++ ..+.|+.||+|+...
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 46888999988888999999999999998655677777653 22 367899999998763
No 171
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.19 E-value=0.42 Score=50.25 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=42.8
Q ss_pred hHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 135 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 135 ~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
.+.+.+.++++|++|++++.|++|..+ +.+.+|++.||+++.+|.||+++..
T Consensus 185 ~~~l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 185 GRLLQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred HHHHHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECCCCEEEcCEEEECCCC
Confidence 345677788899999999999999863 3455688889999999999999875
No 172
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=92.07 E-value=0.59 Score=46.07 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=41.8
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC--eEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~~ 189 (390)
.+.+.+.+.|++.|++|++++.|++|..++++.+..+.+.+| +++.+|.||+++...
T Consensus 222 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 222 ELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 455677788888999999999999998521233433445566 368999999998763
No 173
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=92.05 E-value=0.44 Score=47.40 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=42.7
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC---Ce--EEEcCEEEEecChhh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDI 190 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~---g~--~~~ad~VI~a~p~~~ 190 (390)
.++...+++...+.|++|+.+++|++|..+ ++.+ +|++.+ |+ +++|+.||.|+.+..
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRE-NGLW-HVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CCEE-EEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 355566777777889999999999999875 4434 466543 53 689999999998743
No 174
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=91.94 E-value=0.47 Score=46.53 Aligned_cols=54 Identities=19% Similarity=0.328 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC--eEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.+++.|++|+++++|++|..++ +.+. +++.+| +++.+|.||+++..
T Consensus 212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 212 EVSKVVAKALKKKGVKILTNTKVTAVEKND-DQVV-YENKGGETETLTGEKVLVAVGR 267 (461)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEEE-EEEeCCcEEEEEeCEEEEecCC
Confidence 456677788888999999999999998753 4353 666666 47899999999865
No 175
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.93 E-value=0.46 Score=47.41 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+.+.+.+.+++.|.+++++++|++|..++++ + .|++.+|+.+.+|.+|+|+...
T Consensus 268 ~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~-~-~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 268 QLAANLEEHIKQYPIDLMENQRAKKIETEDGL-I-VVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe-E-EEEECCCCEEEeCEEEECCCCC
Confidence 46677788888889999999999999875333 4 4777788889999999999874
No 176
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.89 E-value=0.35 Score=46.91 Aligned_cols=50 Identities=24% Similarity=0.314 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.|+++|++|+++++|++|.. ++ |++++|+++.+|.||++++.
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~~----v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD--KE----VVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC--CE----EEECCCCEEEccEEEEccCC
Confidence 4566777888999999999999999974 22 56778989999999998763
No 177
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=91.83 E-value=0.51 Score=45.96 Aligned_cols=55 Identities=27% Similarity=0.447 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCe--EEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~--~~~ad~VI~a~p~ 188 (390)
..+.+.+.+.|++.|.+|+++++|++++.++++ + .|++.+|+ ++++|.|++|+.-
T Consensus 214 ~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v-~v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 214 PEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-V-LVTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred HHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-E-EEEEecCCCCEEEeeEEEEccCC
Confidence 456677888888877999999999999986554 5 47887775 6889999999864
No 178
>PRK09897 hypothetical protein; Provisional
Probab=91.78 E-value=0.43 Score=47.52 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=38.6
Q ss_pred chHHHHHHHHHcC--cEEEcCceeeEEEECCCCCEEEEEEcC-CeEEEcCEEEEecCh
Q 016397 134 LCLPIVEHIQSLG--GEVRLNSRVQKIELNDDGTVKNFLLTN-GNVIDGDAYVFATPV 188 (390)
Q Consensus 134 l~~~l~~~l~~~G--~~I~l~~~V~~I~~~~~g~v~~V~~~~-g~~~~ad~VI~a~p~ 188 (390)
..+.+.+.+++.| ++|+.+++|+.|..++++ + .|++.+ |..+.+|.||+|+..
T Consensus 109 ~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~-~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 109 QFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-V-MLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-E-EEEECCCCeEEEcCEEEECCCC
Confidence 3444555555666 688899999999986544 4 366655 467899999999875
No 179
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=91.67 E-value=0.45 Score=44.77 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=52.1
Q ss_pred cCCCCccchHHHHH----HHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhhhc
Q 016397 127 DGNPPERLCLPIVE----HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 195 (390)
Q Consensus 127 ~GG~~~~l~~~l~~----~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~ll 195 (390)
++.|...|++-|.+ .+++.|+.++-|+.|.++.....+ + .+.+.||.+++.|.||+|+...--..|.
T Consensus 384 k~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~n-l-~lkL~dG~~l~tD~vVvavG~ePN~ela 454 (659)
T KOG1346|consen 384 KYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKN-L-VLKLSDGSELRTDLVVVAVGEEPNSELA 454 (659)
T ss_pred cCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccc-e-EEEecCCCeeeeeeEEEEecCCCchhhc
Confidence 67776777777754 567789999999999999986544 5 3889999999999999998754333443
No 180
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=91.60 E-value=13 Score=38.13 Aligned_cols=40 Identities=30% Similarity=0.317 Sum_probs=32.7
Q ss_pred EEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 148 EVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 148 ~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.|+.+++|++|+.++ +.++ |++.+|+++++|.||.|-...
T Consensus 208 ~i~~g~~V~~I~~~~-d~Vt-V~~~dG~ti~aDlVVGADG~~ 247 (668)
T PLN02927 208 VIRNESNVVDFEDSG-DKVT-VVLENGQRYEGDLLVGADGIW 247 (668)
T ss_pred EEEcCCEEEEEEEeC-CEEE-EEECCCCEEEcCEEEECCCCC
Confidence 478999999999854 4464 788888889999999998764
No 181
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=91.56 E-value=0.54 Score=46.94 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
..+.+.|.+.+++.|.+++++++|++|..+++. + .|.+.+|+++.+|.||+|+...
T Consensus 266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~-~-~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 266 PKLAAALEEHVKEYDVDIMNLQRASKLEPAAGL-I-EVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCe-E-EEEECCCCEEEcCEEEECCCCC
Confidence 356677888888889999999999999985433 3 3777788889999999999874
No 182
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=91.53 E-value=0.62 Score=45.62 Aligned_cols=56 Identities=25% Similarity=0.391 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+-+-|.+...+.|++++.++ |+.|..+++|.+++|++.+|++++||.||=|+...
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRR 210 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCcc
Confidence 345556666678899998885 78888877887878999999999999999998764
No 183
>PRK08163 salicylate hydroxylase; Provisional
Probab=91.50 E-value=0.61 Score=44.65 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHcC-cEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G-~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.|.+.|.+.+.+.| ++++.+++|++|..++++ + .|++.+|++++||.||.|....
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~AdG~~ 165 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-V-TVFDQQGNRWTGDALIGCDGVK 165 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-e-EEEEcCCCEEecCEEEECCCcC
Confidence 35667777776655 899999999999975444 5 3777788889999999998764
No 184
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=91.43 E-value=0.63 Score=47.82 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc---CCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~ 189 (390)
..|...|.+.+.+.|++|+.+++|++|..+ +|++.+|.+. +|+ .+.|+.||+|+...
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~ 219 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAKATLIATGGY 219 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCcc
Confidence 567788888888899999999999999984 5777777653 464 46799999998753
No 185
>PRK07395 L-aspartate oxidase; Provisional
Probab=91.41 E-value=0.48 Score=47.62 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=45.2
Q ss_pred ccchHHHHHHHHH-cCcEEEcCceeeEEEECC-CCCEEEEEEc-CCe--EEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELND-DGTVKNFLLT-NGN--VIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~-~g~v~~V~~~-~g~--~~~ad~VI~a~p~ 188 (390)
..+.+.|.+.+++ .|++|++++.|+++..++ +|++++|.+. +|+ .+.|+.||+|+..
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 5788999888865 489999999999999853 3677777653 454 4689999999876
No 186
>PRK07512 L-aspartate oxidase; Provisional
Probab=91.41 E-value=0.36 Score=48.13 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHc-CcEEEcCceeeEEEECCCCCEEEEEEcC-Ce--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~V~~~~-g~--~~~ad~VI~a~p~~ 189 (390)
..+.+.|.+.+++. |++|+.+++|++|..+ ++++++|.+.+ ++ .+.|+.||+|+...
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 46889998888765 8999999999999874 56777776643 32 57899999998763
No 187
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.29 E-value=0.65 Score=46.18 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC----eEEEcCEEEEecChhh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPVDI 190 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g----~~~~ad~VI~a~p~~~ 190 (390)
.+...++...+++|++|+.+++|++|..+ ++.+ +|++.++ .++.|+.||.|+.+..
T Consensus 156 rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~~~-~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 156 RLVVLNALDAAERGATILTRTRCVSARRE-GGLW-RVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHCCCEEecCcEEEEEEEc-CCEE-EEEEEeCCCCEEEEEecEEEECCCccH
Confidence 45556667777899999999999999985 3433 4666554 3589999999998743
No 188
>PRK08401 L-aspartate oxidase; Provisional
Probab=91.09 E-value=0.63 Score=45.79 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
..+.+.|.+.+++.|+++..+ .|+.+..+ ++++++|.+ +|+.+.++.||+|+...
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~-~g~~i~a~~VVLATGG~ 174 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIK-NGKAYGVFL-DGELLKFDATVIATGGF 174 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEee-CCEEEEEEE-CCEEEEeCeEEECCCcC
Confidence 578899999998899999876 78888874 566767776 56788999999998763
No 189
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=90.95 E-value=0.64 Score=46.04 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEEcC-C--eEEEcCEEEEecChhh
Q 016397 132 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN-G--NVIDGDAYVFATPVDI 190 (390)
Q Consensus 132 ~~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~~~-g--~~~~ad~VI~a~p~~~ 190 (390)
..+.+.|.+.+++ .|++|+.++.|++|..+ ++.+++|.+.+ + ..+.++.||+|+....
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4688899988887 68999999999999875 56676776644 3 3678999999987643
No 190
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=90.87 E-value=0.69 Score=46.10 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=42.6
Q ss_pred ccchHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEEc-CCe--EEEcC-EEEEecCh
Q 016397 132 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~--~~~ad-~VI~a~p~ 188 (390)
..+..+|.+.+.+ .|++|+++++|+++..+ +++|++|... +|+ .+.|+ .||+|+..
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG 233 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVERGGERRRVRARRGVLLAAGG 233 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEec-CCEEEEEEEEECCcEEEEEeCceEEEeCCC
Confidence 3678888777765 48999999999999985 6778787653 343 57786 79998865
No 191
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=90.82 E-value=0.82 Score=42.71 Aligned_cols=61 Identities=20% Similarity=0.313 Sum_probs=47.5
Q ss_pred cCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC---C--eEEEcCEEEEecCh
Q 016397 127 DGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPV 188 (390)
Q Consensus 127 ~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~---g--~~~~ad~VI~a~p~ 188 (390)
.|+|...+..+..+.|..+|.+++|+++|+.+..++||.+ .|++.| | ++++||.+.+++.-
T Consensus 247 ~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 247 GGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred ccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccC
Confidence 3445556777788888889999999999999999888766 366543 3 47899998888754
No 192
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=90.74 E-value=0.69 Score=46.54 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=42.2
Q ss_pred ccchHHHHHHHHH---c-CcEEEcCceeeEEEECCCCCEEEEEEc---C--------------C-eEEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQS---L-GGEVRLNSRVQKIELNDDGTVKNFLLT---N--------------G-NVIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~---~-G~~I~l~~~V~~I~~~~~g~v~~V~~~---~--------------g-~~~~ad~VI~a~p~ 188 (390)
..+++.|.+.+++ . |++|+++++++++..+ +|+|++|... + + ..+.|+.||+|+.-
T Consensus 148 ~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGG 225 (549)
T PRK12834 148 PGVVEPFERRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGG 225 (549)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCC
Confidence 4577888776652 3 5899999999999985 6788888741 1 1 25789999999864
No 193
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=90.72 E-value=0.75 Score=44.65 Aligned_cols=53 Identities=26% Similarity=0.355 Sum_probs=41.6
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+.+.+.+.+++.|+++++++.|++|..+ +.+ +.+.+|+++.+|.||++++..
T Consensus 180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 180 EMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcCCCEEEeCEEEECCCcc
Confidence 34566777788899999999999999863 333 455678889999999998763
No 194
>PTZ00058 glutathione reductase; Provisional
Probab=90.56 E-value=0.97 Score=45.47 Aligned_cols=55 Identities=11% Similarity=0.173 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC-eEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g-~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.|++.|++|++++.|++|..++++.+. +...++ +++.+|.||+++..
T Consensus 279 ~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 279 TIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCC
Confidence 45667778888899999999999999875443342 444344 57999999999864
No 195
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.37 E-value=0.9 Score=44.26 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.+++.|++++++++|++|..+ ++.+ .+. .+|+++.+|.||+|+..
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v-~v~-~~g~~i~~D~viva~G~ 251 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKND-GDQV-LVV-TEDETYRFDALLYATGR 251 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEE-EEE-ECCeEEEcCEEEEeeCC
Confidence 34455667788899999999999999874 3334 233 45778999999998764
No 196
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=90.33 E-value=0.67 Score=43.86 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.++++|++++++++|++|.. + .|.+.+|+++.+|.||++++.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTLPADAILWATGA 241 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEEecCEEEEccCC
Confidence 3456677788889999999999999863 2 256678889999999999875
No 197
>PTZ00052 thioredoxin reductase; Provisional
Probab=90.23 E-value=0.87 Score=45.21 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+.+.+.+.|++.|+++++++.|++|...+ +.+ .|.+.+|+++.+|.||+++...
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DKI-KVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-CeE-EEEECCCCEEEcCEEEEeeCCC
Confidence 356778888888999999999999998743 334 3677788889999999998753
No 198
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=90.18 E-value=0.83 Score=45.07 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC--C--eEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--G--NVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~--g--~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.+++.|.+|+++++|++|..+++ .+ .|.+.+ | +.+.+|.||+++..
T Consensus 225 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 225 QVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK-GV-SVAYTDADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred HHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC-EE-EEEEEeCCCceeEEEcCEEEEccCC
Confidence 4566777888889999999999999987533 34 355444 3 46899999999865
No 199
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=90.00 E-value=0.61 Score=45.04 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=41.7
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh-Hhhh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQ 194 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~-~~~l 194 (390)
|.+.|.+.+. ++.|+++++|++|..++++ + .|.+.+|+++++|.||.|..... +.+.
T Consensus 107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vVgADG~~S~vR~~ 164 (414)
T TIGR03219 107 FLDALLKHLP--EGIASFGKRATQIEEQAEE-V-QVLFTDGTEYRCDLLIGADGIKSALRDY 164 (414)
T ss_pred HHHHHHHhCC--CceEEcCCEEEEEEecCCc-E-EEEEcCCCEEEeeEEEECCCccHHHHHH
Confidence 4455555442 4679999999999986555 5 47888888899999999987653 3443
No 200
>PRK06370 mercuric reductase; Validated
Probab=89.96 E-value=1.1 Score=44.14 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=39.9
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE--cC-CeEEEcCEEEEecCh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TN-GNVIDGDAYVFATPV 188 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~--~~-g~~~~ad~VI~a~p~ 188 (390)
+.+.+.+.+++.|++|+++++|++|..++++ + .|.+ .+ ++++.+|.||+++..
T Consensus 214 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~-~-~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 214 VAAAVREILEREGIDVRLNAECIRVERDGDG-I-AVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCE-E-EEEEEeCCCceEEEeCEEEECcCC
Confidence 4567777888899999999999999875433 3 2333 22 457899999999875
No 201
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=89.80 E-value=0.96 Score=45.52 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=42.1
Q ss_pred chHHHHHHHHHc-CcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 134 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 134 l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
+...|.+.+++. |+++. ...|+.+..++++.+.+|.+.+|..+.||.||+|+....
T Consensus 98 y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 98 YRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 445666777766 56665 457788876435667789999998899999999998865
No 202
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=89.79 E-value=1.1 Score=43.84 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=40.8
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.|++.|++++++++|++|..+ ++.+ .+.+.+| ++.+|.||+++..
T Consensus 200 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 200 DIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCC-eEEeCEEEEeecC
Confidence 45566777888899999999999999975 3434 3555555 5899999999754
No 203
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.74 E-value=1 Score=44.29 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=41.3
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc--CC--eEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~--~g--~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.|++.|++|+++++|++|..+ ++.+ .+.+. +| +++.+|.||+++..
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCc
Confidence 45677788888899999999999999874 3334 24443 56 36899999999864
No 204
>PRK07236 hypothetical protein; Provisional
Probab=89.69 E-value=0.74 Score=44.00 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=39.2
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+.+.|.+.+ .+.+|+++++|++|+.++++ + .|++.+|+++++|.||.|-...
T Consensus 101 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vIgADG~~ 153 (386)
T PRK07236 101 VLYRALRAAF--PAERYHLGETLVGFEQDGDR-V-TARFADGRRETADLLVGADGGR 153 (386)
T ss_pred HHHHHHHHhC--CCcEEEcCCEEEEEEecCCe-E-EEEECCCCEEEeCEEEECCCCC
Confidence 3444454433 24689999999999986444 5 3788899899999999997653
No 205
>PRK14727 putative mercuric reductase; Provisional
Probab=89.61 E-value=0.92 Score=44.80 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=41.4
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+.+.+.+.+++.|++|+++++|++|..+++ .+ .|.+.++ ++.+|.||+++...
T Consensus 229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-~~-~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 229 LLGETLTACFEKEGIEVLNNTQASLVEHDDN-GF-VLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCC-EE-EEEEcCC-eEEeCEEEEccCCC
Confidence 4556777788889999999999999987533 34 3555555 58999999998763
No 206
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.48 E-value=0.8 Score=44.93 Aligned_cols=58 Identities=19% Similarity=0.083 Sum_probs=41.7
Q ss_pred ccchHHHHHHHHHcCcE--EEcCceeeEEEECCCCCEEEEEEcCC--e--EEEcCEEEEecChhhH
Q 016397 132 ERLCLPIVEHIQSLGGE--VRLNSRVQKIELNDDGTVKNFLLTNG--N--VIDGDAYVFATPVDIL 191 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~--I~l~~~V~~I~~~~~g~v~~V~~~~g--~--~~~ad~VI~a~p~~~~ 191 (390)
..+.+-|.+..+..|.+ |+++++|++|...+ +++ .|++.++ . +..+|+||+|+.....
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w-~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKW-RVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeE-EEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 35667777777777866 99999999999853 444 3666532 2 4578999999987543
No 207
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=89.39 E-value=0.6 Score=46.67 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=62.5
Q ss_pred cCCCcccccHHHHHHHHHHHhc--ccCCceEEeecCCCC--ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEE
Q 016397 95 NFINPDELSMQCILIALNRFLQ--EKHGSKMAFLDGNPP--ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFL 170 (390)
Q Consensus 95 ~~~~~~~~Sa~~~~~~l~~~~~--~~~~~~~~~~~GG~~--~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~ 170 (390)
++.+.+-+|-......+ -+++ .-.| .++.|..|.. ..+..+|+...++.|..|..+++|++|....++ +.+|+
T Consensus 148 ~g~e~~lLsPee~~~~~-pLLn~d~v~g-~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVe 224 (856)
T KOG2844|consen 148 HGVESELLSPEETQELF-PLLNVDDVYG-GLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDK-FGGVE 224 (856)
T ss_pred ccceeeecCHHHHHHhC-cccchhHhee-eeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC-cccee
Confidence 44455566666544321 1111 1112 3556755531 467788888888999999999999999985444 44899
Q ss_pred EcCCeEEEcCEEEEecChhh
Q 016397 171 LTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 171 ~~~g~~~~ad~VI~a~p~~~ 190 (390)
|..| .+++.+||-|+...+
T Consensus 225 T~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 225 TPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred ccCc-ceecceEEechhHHH
Confidence 9888 489999999988765
No 208
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=89.31 E-value=1.3 Score=43.23 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=41.1
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
..+.+.+.+.+++.|++|+++++|++|.. ++.+..+.+. +.++.+|.||++++.
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~-~~~i~~d~vi~a~G~ 244 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTD-KGEYEADVVIVATGV 244 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeC-CCEEEcCEEEECcCC
Confidence 34566777788889999999999999975 2334345554 447999999999875
No 209
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=89.24 E-value=1 Score=45.85 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHHcC-cEEEcCceeeEEEECCCCCEEEEEE---cCCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G-~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 189 (390)
..+.+.|.+.+++.| ++|+.++.|++|..+ ++++++|.. .+|+ .+.|+.||+|+...
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCCch
Confidence 357778877777766 999999999999874 466767643 3453 67899999999853
No 210
>PRK08071 L-aspartate oxidase; Provisional
Probab=89.03 E-value=0.86 Score=45.40 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=42.6
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC--Ce--EEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN--VIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~--g~--~~~ad~VI~a~p~ 188 (390)
..+.+.|.+.++ .|++|+.++.|++|..+ ++++.+|.+.+ |+ .+.|+.||+|+..
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEcCeEEEecCC
Confidence 357788877765 68999999999999874 56677776543 33 5789999999865
No 211
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.02 E-value=1.4 Score=43.35 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc---C--CeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---N--GNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~---~--g~~~~ad~VI~a~p~~ 189 (390)
.+.+.+.+.|++.|++|++++.|++|..++++ + .+++. + ++++.+|.||+++...
T Consensus 216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~-v-~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 216 ETAKTLQKALTKQGMKFKLGSKVTGATAGADG-V-SLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred HHHHHHHHHHHhcCCEEEECcEEEEEEEcCCe-E-EEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 45677788888899999999999999875344 3 23332 2 3578999999998753
No 212
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=88.88 E-value=1.2 Score=49.12 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=43.0
Q ss_pred cchHHHHHHHHH---cCcEEEcCceeeEEEECCC----C----CEEEEEEc-----CCe--EEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQS---LGGEVRLNSRVQKIELNDD----G----TVKNFLLT-----NGN--VIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~---~G~~I~l~~~V~~I~~~~~----g----~v~~V~~~-----~g~--~~~ad~VI~a~p~ 188 (390)
.+...|.+.+++ .|++|+++++|+++..+++ | +|++|... +|+ .+.|+.||+|+.-
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGG 618 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGG 618 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCC
Confidence 467777777765 3899999999999998642 2 68888765 453 5789999999875
No 213
>PLN02546 glutathione reductase
Probab=88.82 E-value=1.5 Score=44.22 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+.+.+.+.|++.|++|++++.|++|..++++.+ .|.+.+++...+|.||+++...
T Consensus 294 ~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 294 EVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccc
Confidence 3445667788889999999999999987545544 3555555444589999998753
No 214
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=88.79 E-value=0.65 Score=42.49 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=39.7
Q ss_pred HHHHHHHcCcEEEcCceeeEEEEC-CCCCEEEEEEcC--Ce----EEEcCEEEEecChhhHhhhc
Q 016397 138 IVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTN--GN----VIDGDAYVFATPVDILKLQL 195 (390)
Q Consensus 138 l~~~l~~~G~~I~l~~~V~~I~~~-~~g~v~~V~~~~--g~----~~~ad~VI~a~p~~~~~~ll 195 (390)
|...+...+.+|++++.|++|..+ +++++++|++.+ +. .+.++.||++..+-...+||
T Consensus 199 L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LL 263 (296)
T PF00732_consen 199 LPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLL 263 (296)
T ss_dssp HHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHH
T ss_pred cchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhh
Confidence 344443448999999999999764 356677887754 33 45689999998875555553
No 215
>PRK10262 thioredoxin reductase; Provisional
Probab=88.76 E-value=1.1 Score=41.69 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=39.8
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC------eEEEcCEEEEecCh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG------NVIDGDAYVFATPV 188 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g------~~~~ad~VI~a~p~ 188 (390)
+.+.+.+.+++.|+++++++.|++|..+ ++.+.+|++.++ +++.+|.||+++..
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 4566677777889999999999999864 333545665432 36889999998764
No 216
>PLN02985 squalene monooxygenase
Probab=88.66 E-value=14 Score=36.98 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHc-CcEEEcCceeeEEEECCCCCEEEEEE--cCCe--EEEcCEEEEecCh-hhHhhhc
Q 016397 133 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL--TNGN--VIDGDAYVFATPV-DILKLQL 195 (390)
Q Consensus 133 ~l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~V~~--~~g~--~~~ad~VI~a~p~-~~~~~ll 195 (390)
.+.+.|.+.+.+. +++++.+ .|+++..+ ++.+.+|++ .+|+ +++||.||.|... ..+.+.+
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l 214 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSL 214 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHh
Confidence 4567777777655 5788865 57777654 454545665 3564 3568999998776 4444444
No 217
>PRK14694 putative mercuric reductase; Provisional
Probab=88.58 E-value=1.2 Score=43.75 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=41.7
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
..+.+.+.+.+++.|++|++++.|++|..+ ++.+ .+.+.++ ++.+|.||+++..
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~ 271 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GREF-ILETNAG-TLRAEQLLVATGR 271 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEECCC-EEEeCEEEEccCC
Confidence 356677888888899999999999999874 3333 3555444 6999999999865
No 218
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=88.57 E-value=1.3 Score=43.83 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=42.0
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC---eEEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g---~~~~ad~VI~a~p~ 188 (390)
..+.+.+.+.|++.|++|++++.|++|...+ +.+ .|++.+| +++.+|.||+++..
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIE-AKV-KVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeE-EEEEecCCcceEEEeCEEEEEecC
Confidence 3456677788888999999999999998753 334 3655555 37899999999875
No 219
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=88.48 E-value=1.6 Score=42.90 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=40.2
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc---CCeEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGNVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.+++.|++|+++++|++|..++++ + .|++. +++++.+|.||+++..
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~-~-~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 208 EISAAVEEALAEEGIEVVTSAQVKAVSVRGGG-K-IITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCE-E-EEEEEeCCCceEEEeCEEEEeECC
Confidence 35566777888899999999999999875333 3 24443 2357999999999864
No 220
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.39 E-value=1.7 Score=44.00 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEE---cCCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 189 (390)
..+.+.|.+.+.+ .|++|..++.|+++..+ ++++++|.. .+|+ .+.|+.||+|+...
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 4688888887765 58999999999999874 566767654 3554 57899999998764
No 221
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=88.25 E-value=1.8 Score=42.43 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=25.9
Q ss_pred HHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE
Q 016397 138 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL 171 (390)
Q Consensus 138 l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~ 171 (390)
..+.+++.|++|++++.+++|..+++|++++|++
T Consensus 315 ~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~ 348 (449)
T TIGR01316 315 EIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKF 348 (449)
T ss_pred HHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEE
Confidence 3456778899999999999998755666666655
No 222
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=88.01 E-value=1.4 Score=42.98 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=41.1
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
..+.+.+.+.|++.|++++++++|++|.. . .|++.+|+++.+|.||++++.
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAING---N---EVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEECCCCEEEeCEEEECcCC
Confidence 34566778888889999999999999963 2 256677888999999999875
No 223
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=87.81 E-value=0.78 Score=48.28 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=38.6
Q ss_pred HHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 139 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 139 ~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+.+++.|++++++++|++|+.+ .+. |++.+|+++.+|++|+|+...
T Consensus 61 ~~~~~~~gv~~~~g~~V~~Id~~--~k~--V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 61 KDWYEKHGITLYTGETVIQIDTD--QKQ--VITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred HHHHHHCCCEEEcCCeEEEEECC--CCE--EEECCCcEeeCCEEEECCCCC
Confidence 45567789999999999999974 333 677788889999999999864
No 224
>PRK07846 mycothione reductase; Reviewed
Probab=87.29 E-value=1.8 Score=42.44 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=35.3
Q ss_pred HcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 144 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 144 ~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
+.|.+++++++|++|..+ ++.+ .|++.+|+++.+|.||+++...
T Consensus 218 ~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 218 SKRWDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRV 261 (451)
T ss_pred hcCeEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCc
Confidence 568999999999999874 3334 3677778889999999998753
No 225
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=87.15 E-value=0.91 Score=45.50 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=37.0
Q ss_pred HcCcEEEcCceeeEEEECCCCCEEEEEEcCC-e---EEEcCEEEEecChhhHhhh
Q 016397 144 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N---VIDGDAYVFATPVDILKLQ 194 (390)
Q Consensus 144 ~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g-~---~~~ad~VI~a~p~~~~~~l 194 (390)
+.+.+|++++.|++|..+ ++++++|++.++ + .+.++.||++...-...+|
T Consensus 206 r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~L 259 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQL 259 (532)
T ss_pred CCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHH
Confidence 456999999999999985 567888887543 2 2478999998876333333
No 226
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=87.06 E-value=1.7 Score=43.78 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=41.8
Q ss_pred chHHHHHHHHHc-CcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 134 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 134 l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
+...|.+.+.+. |++| +.+.|++|..+ ++++.+|.+.+|..+.|+.||+|+....
T Consensus 102 y~kaL~e~L~~~~nV~I-~q~~V~~Li~e-~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 102 YRAAMREILENQPNLDL-FQGEVEDLIVE-NGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHcCCCcEE-EEeEEEEEEec-CCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 345566666654 6777 56789999875 5667789999998999999999998643
No 227
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.05 E-value=1.6 Score=44.74 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=44.2
Q ss_pred ccchHHHHHHHHHc--------C-----cEEEcCceeeEEEECCCCCEEEEEE---cCCe--EEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSL--------G-----GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~--------G-----~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~ 188 (390)
..+.+.|.+.+++. | ++|..++.|+++..+ +|++++|.. .+|+ .+.|+.||+|+..
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 46888888888766 6 899999999999974 576767653 3454 5789999999875
No 228
>PRK13748 putative mercuric reductase; Provisional
Probab=87.02 E-value=1.7 Score=43.83 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=41.9
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
..+.+.+.+.|++.|++|+++++|++|..+ ++.+ .+.+.++ ++.+|.||+++..
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~ 363 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGR 363 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCC
Confidence 345677778888899999999999999874 4434 3555555 6999999999875
No 229
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=86.80 E-value=1.6 Score=43.54 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=36.8
Q ss_pred cC-cEEEcCceeeEEEECCC--CCEEEEEEc---CCe--EEEcCEEEEecChhhHhhh
Q 016397 145 LG-GEVRLNSRVQKIELNDD--GTVKNFLLT---NGN--VIDGDAYVFATPVDILKLQ 194 (390)
Q Consensus 145 ~G-~~I~l~~~V~~I~~~~~--g~v~~V~~~---~g~--~~~ad~VI~a~p~~~~~~l 194 (390)
.+ .+|++++.|++|..+++ ++|++|++. +|+ ++.|+.||+|+..=...+|
T Consensus 226 ~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRL 283 (544)
T TIGR02462 226 SERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQI 283 (544)
T ss_pred CCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHH
Confidence 44 89999999999998754 357777554 353 5789999998876444444
No 230
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=86.72 E-value=0.74 Score=46.63 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=42.8
Q ss_pred HHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 137 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 137 ~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
.|.+.|++.|.++++++.+++|.. ++++.+|..+||..+.||-||+|+..
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GI 241 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGI 241 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEeccc
Confidence 456677889999999999999997 34577899999999999999999864
No 231
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=86.62 E-value=1.8 Score=41.61 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=36.3
Q ss_pred HHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 141 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 141 ~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+.+.|+++++++.|++|..+ + +. |.+.+|+++.+|++|+|+...
T Consensus 67 ~~~~~~i~~~~g~~V~~id~~-~-~~--v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 67 WWQENNVHLHSGVTIKTLGRD-T-RE--LVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred HHHHCCCEEEcCCEEEEEECC-C-CE--EEECCCCEEEcCEEEEccCCC
Confidence 345678999999999999974 3 33 667788889999999999764
No 232
>PRK06753 hypothetical protein; Provisional
Probab=86.50 E-value=1.6 Score=41.29 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=40.9
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh-hhHhhhc
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV-DILKLQL 195 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~-~~~~~ll 195 (390)
|.+.|.+.++ +.+|+++++|++|+.+ ++.+ .|++.+|+++++|.||-|-.. ..+.+.+
T Consensus 100 l~~~L~~~~~--~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~~~vigadG~~S~vR~~~ 158 (373)
T PRK06753 100 LIDIIKSYVK--EDAIFTGKEVTKIENE-TDKV-TIHFADGESEAFDLCIGADGIHSKVRQSV 158 (373)
T ss_pred HHHHHHHhCC--CceEEECCEEEEEEec-CCcE-EEEECCCCEEecCEEEECCCcchHHHHHh
Confidence 3344444332 4689999999999975 4446 478888988999999999876 3444443
No 233
>PLN02815 L-aspartate oxidase
Probab=86.38 E-value=1.6 Score=44.33 Aligned_cols=57 Identities=9% Similarity=0.047 Sum_probs=43.6
Q ss_pred ccchHHHHHHHHHc-CcEEEcCceeeEEEECCCC-C--EEEEEEc---CCe--EEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDG-T--VKNFLLT---NGN--VIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g-~--v~~V~~~---~g~--~~~ad~VI~a~p~ 188 (390)
..+.+.|.+.+++. |++|..++.|+++..+++| . |++|... +|+ .+.|+.||+|+.-
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG 220 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGG 220 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCc
Confidence 46888888888764 7999999999999985444 2 6677652 453 5689999999875
No 234
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.38 E-value=1.8 Score=43.93 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=44.2
Q ss_pred ccchHHHHHHHHHcC----cEEEcCceeeEEEECCCCCEEEEEEcC---Ce--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLG----GEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G----~~I~l~~~V~~I~~~~~g~v~~V~~~~---g~--~~~ad~VI~a~p~~ 189 (390)
..|...|.+.+++.+ ++|..++.|+++..+++|+|++|...+ |+ .+.|+.||+|+...
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 199 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGP 199 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCC
Confidence 468888887776543 678999999999986567888887643 43 46899999998763
No 235
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=86.34 E-value=2.5 Score=41.48 Aligned_cols=53 Identities=8% Similarity=0.145 Sum_probs=39.6
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC--eEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.|++.|++|+++++|++|..+ ++.+ .+.. +| +++.+|.||+|+..
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~v-~~~~-~g~~~~i~~D~vivA~G~ 266 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSY-KKQA-LFEY-EGSIQEVNAEFVLVSVGR 266 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCEE-EEEE-CCceEEEEeCEEEEecCC
Confidence 45567778888899999999999999864 3323 2333 44 36899999999875
No 236
>PRK09077 L-aspartate oxidase; Provisional
Probab=85.58 E-value=2.7 Score=42.18 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=44.4
Q ss_pred ccchHHHHHHHHHc-CcEEEcCceeeEEEECC-----CCCEEEEEEc---CCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-----DGTVKNFLLT---NGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~-----~g~v~~V~~~---~g~--~~~ad~VI~a~p~~ 189 (390)
..+...|.+.+.+. |++|..+++|+++..++ ++++++|... +|+ .+.++.||+|+...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 206 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGA 206 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCC
Confidence 46788888877664 79999999999998743 3678787653 353 57899999998763
No 237
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=85.26 E-value=3 Score=40.87 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=38.7
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
+.+.+.+. .+.|.++++++.|++|..++++ + .|++.+|+++.+|.||+++...
T Consensus 212 ~~~~l~~~-~~~gI~i~~~~~V~~i~~~~~~-v-~v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 212 ISDRFTEI-AKKKWDIRLGRNVTAVEQDGDG-V-TLTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred HHHHHHHH-HhcCCEEEeCCEEEEEEEcCCe-E-EEEEcCCCEEEcCEEEEeeccC
Confidence 33444433 3468999999999999975433 4 3667778889999999998753
No 238
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=85.10 E-value=3.2 Score=42.12 Aligned_cols=56 Identities=20% Similarity=0.168 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHc-CcEEEcCceeeEEEECCCCCEEEEEE---cCCe--EEEcCEEEEecCh
Q 016397 132 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPV 188 (390)
Q Consensus 132 ~~l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~ 188 (390)
..|.+.|.+.+.+. +++|..++.|+++..+ +|++++|.. .+|+ .+.|+.||+|+..
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 46788888777664 7899999999999985 576766643 4563 6789999999875
No 239
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=85.09 E-value=3.6 Score=41.72 Aligned_cols=57 Identities=19% Similarity=0.093 Sum_probs=44.6
Q ss_pred ccchHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEE---cCC--eEEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g--~~~~ad~VI~a~p~~ 189 (390)
..|.+.|.+.+.+ .|++|..++.|+++..+ +|++++|.. .+| ..+.|+.||+|+...
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGGA 194 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCC
Confidence 5788899887765 47899999999999985 677777653 356 367899999998763
No 240
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=84.39 E-value=1.7 Score=39.83 Aligned_cols=61 Identities=25% Similarity=0.263 Sum_probs=49.7
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCe--EEEcCEEEEecChhhHhhh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVDILKLQ 194 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~--~~~ad~VI~a~p~~~~~~l 194 (390)
++-++|.+.+++.||.+..+-+|.+.+.. +|+|+.|.+.++. .+++|.+|+|+....-+.|
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn~~diP~~a~~~VLAsGsffskGL 321 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTRNHADIPLRADFYVLASGSFFSKGL 321 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEecccccCCCChhHeeeeccccccccc
Confidence 78899999999999999999999999985 5678888888774 4689999998765443333
No 241
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=84.34 E-value=3.7 Score=40.43 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=29.4
Q ss_pred CCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 334 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
|..++||.+||-..+. ..+..|+..|+.||..|...++
T Consensus 429 T~~~gVfa~GD~~~~~--~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 429 TTNPKIFAGGDAVRGA--DLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCCCEEEECCcCCCc--cHHHHHHHHHHHHHHHHHHHhc
Confidence 3467899999987642 3567899999999999888765
No 242
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=84.33 E-value=1.5 Score=41.47 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=38.1
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
+...+.+.++..|++++.+ +|++|+.+ ++ . |.+.+|+++.+|++|+|+...
T Consensus 56 ~~~~~~~~~~~~gv~~~~~-~v~~id~~-~~-~--V~~~~g~~~~yD~LviAtG~~ 106 (364)
T TIGR03169 56 IRIDLRRLARQAGARFVIA-EATGIDPD-RR-K--VLLANRPPLSYDVLSLDVGST 106 (364)
T ss_pred hcccHHHHHHhcCCEEEEE-EEEEEecc-cC-E--EEECCCCcccccEEEEccCCC
Confidence 3334455566679998875 79999974 33 2 778888889999999998764
No 243
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=84.20 E-value=3.7 Score=41.82 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCC--CCEEEEEE---cCCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD--GTVKNFLL---TNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~--g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 189 (390)
..+...+.+.+.+.+++|..++.|+++..+++ |++++|.. .+|+ .+.|+.||+|+...
T Consensus 126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 45666666677777789999999999998543 67878764 3454 57899999998764
No 244
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=84.09 E-value=1.6 Score=40.92 Aligned_cols=60 Identities=25% Similarity=0.297 Sum_probs=35.7
Q ss_pred CCCCccchHHHHHHHH------HcCcEEEcCceeeEEEECCCCCEEEEEEcC---C--eEEEcCEEEEecCh
Q 016397 128 GNPPERLCLPIVEHIQ------SLGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPV 188 (390)
Q Consensus 128 GG~~~~l~~~l~~~l~------~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~---g--~~~~ad~VI~a~p~ 188 (390)
||.+..++++|.+.+- +...+|+.+++|++++.+++|.+ .+++.+ | .++++|.||+||..
T Consensus 269 ~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 269 GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEETTT--EEEEEESEEEE---E
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEECCCCCeEEEecCEEEEcCCc
Confidence 4444455555544331 12368999999999999765555 366654 2 46789999999863
No 245
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=83.39 E-value=2.7 Score=44.62 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=38.0
Q ss_pred HHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 139 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 139 ~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+.+++.|++++++++|++|..+ .++ |.+.+|+++.+|++|+|+...
T Consensus 66 ~~~~~~~gI~~~~g~~V~~Id~~--~~~--V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 66 EGFYEKHGIKVLVGERAITINRQ--EKV--IHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred HHHHHhCCCEEEcCCEEEEEeCC--CcE--EEECCCcEEECCEEEECCCCC
Confidence 34556789999999999999873 333 677788889999999999864
No 246
>PRK12831 putative oxidoreductase; Provisional
Probab=83.35 E-value=3.7 Score=40.37 Aligned_cols=38 Identities=29% Similarity=0.311 Sum_probs=30.2
Q ss_pred CCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 334 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
|..+|||.+||-+.+. ..+..|+..|+.||..|...+.
T Consensus 424 Ts~pgVfAaGD~~~g~--~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 424 TSKEGVFAGGDAVTGA--ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred cCCCCEEEeCCCCCCc--hHHHHHHHHHHHHHHHHHHHhc
Confidence 4467899999987642 5778899999999999988774
No 247
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=83.31 E-value=0.36 Score=46.92 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHcCcEEEcCceeeEEEECCCCCEEEEEEcC--C-eEEEcCEEEEecChhhHhhhcC
Q 016397 143 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--G-NVIDGDAYVFATPVDILKLQLP 196 (390)
Q Consensus 143 ~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~--g-~~~~ad~VI~a~p~~~~~~ll~ 196 (390)
.+.|++|++++.|+++..+ ++++++|++.+ | .+++|+.||=|+.-..+..+..
T Consensus 101 ~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG 156 (428)
T PF12831_consen 101 AEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAG 156 (428)
T ss_dssp ---------------------------------------------------------
T ss_pred ccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 5679999999999999995 56677888765 3 5789999999988766666643
No 248
>PRK06475 salicylate hydroxylase; Provisional
Probab=83.31 E-value=4.5 Score=38.81 Aligned_cols=61 Identities=10% Similarity=0.187 Sum_probs=42.8
Q ss_pred cchHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEE---cCCeEEEcCEEEEecChh-hHhhhc
Q 016397 133 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGNVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 133 ~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~~~~ad~VI~a~p~~-~~~~ll 195 (390)
.|.+.|.+.+.+ .|++|+++++|+++..++++ + .|++ .+++++++|.||-|-..+ .+.+.+
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~ 173 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLIACDGVWSMLRAKA 173 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEEECCCccHhHHhhc
Confidence 455667776654 47899999999999985444 4 2554 234578999999998764 445554
No 249
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=82.34 E-value=4.5 Score=41.70 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=31.9
Q ss_pred CCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 333 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
+|..+|||.+||-..+. ..+..|+..|+.||..|.+.++
T Consensus 614 ~Ts~~gVfAaGD~~~g~--~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 614 QTSNPKIFAGGDAVRGA--DLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred ccCCCCEEEcCCcCCCC--cHHHHHHHHHHHHHHHHHHHhC
Confidence 34578999999987642 4678899999999999998875
No 250
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=82.22 E-value=3.7 Score=37.83 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=42.9
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 190 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 190 (390)
..|.+++.+..+..|.++.. ..|.+++..++ .. .|++.+|+ +++++||+|+....
T Consensus 61 ~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~-~F-~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 61 PELMEQMKEQAEKFGVEIVE-DEVEKVELEGG-PF-KVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc-eE-EEEECCCe-EEEeEEEECcCCcc
Confidence 56778888877778888777 88888887533 44 48888886 99999999998753
No 251
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=82.17 E-value=4.4 Score=38.68 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEE--EEEcCCeEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKN--FLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~--V~~~~g~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.+++.|+++++++.|.+|....+. ... +...++..+.+|.++++++.
T Consensus 179 ~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 179 EVAEELAELLEKYGVELLLGTKVVGVEGKGNT-LVVERVVGIDGEEIKADLVIIGPGE 235 (415)
T ss_pred HHHHHHHHHHHHCCcEEEeCCceEEEEcccCc-ceeeEEEEeCCcEEEeeEEEEeecc
Confidence 46777888888999999999999999985332 222 45567788999999999865
No 252
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=82.17 E-value=2.1 Score=39.18 Aligned_cols=58 Identities=26% Similarity=0.246 Sum_probs=43.2
Q ss_pred cchHHHHHHHHH----c--CcEEEcCceeeEEEECCCCCEEEEEEcC--Ce--EEEcCEEEEecChhhH
Q 016397 133 RLCLPIVEHIQS----L--GGEVRLNSRVQKIELNDDGTVKNFLLTN--GN--VIDGDAYVFATPVDIL 191 (390)
Q Consensus 133 ~l~~~l~~~l~~----~--G~~I~l~~~V~~I~~~~~g~v~~V~~~~--g~--~~~ad~VI~a~p~~~~ 191 (390)
.|+.+|...+++ + -.+|.++++|+.|.. .+|+|.+|++.| |+ .+.+|.||+++....+
T Consensus 140 ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 140 EIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 467777766653 1 278999999999996 578888888754 43 5678999998876444
No 253
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=81.88 E-value=4.3 Score=40.01 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=29.3
Q ss_pred CCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 334 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
|..+|||.+||-+.+. ..+..|+..|+.||..|...+.
T Consensus 428 Ts~~gVfa~GD~~~g~--~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 428 TSNPKVFAAGDMRRGQ--SLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred CCCCCEEEccccCCCc--hhHHHHHHHHHHHHHHHHHHHh
Confidence 3467899999887642 3677889999999998888774
No 254
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=81.69 E-value=5.2 Score=39.23 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=27.6
Q ss_pred CCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 334 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
|..+|||.+||-..+ +..+..|+..|+.||..|...+.
T Consensus 415 Ts~~~VfA~GD~~~~--~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 415 TSLPGVFAGGDIVTG--AATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred cCCCCEEEeCCcCCC--chHHHHHHHHHHHHHHHHHHHHh
Confidence 345788888887743 13567788888888888877764
No 255
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=81.66 E-value=1.9 Score=44.36 Aligned_cols=14 Identities=21% Similarity=-0.033 Sum_probs=10.7
Q ss_pred EcCEEEEecChhhH
Q 016397 178 DGDAYVFATPVDIL 191 (390)
Q Consensus 178 ~ad~VI~a~p~~~~ 191 (390)
.+|+||+|+.....
T Consensus 412 ~~DavilAtGa~~~ 425 (654)
T PRK12769 412 DYDAVFVGVGTYRS 425 (654)
T ss_pred cCCEEEEeCCCCCC
Confidence 58999999876543
No 256
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.63 E-value=4.6 Score=40.29 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=36.9
Q ss_pred HHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEEcC---C--eEEEcCEEEEecCh
Q 016397 138 IVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPV 188 (390)
Q Consensus 138 l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~~~---g--~~~~ad~VI~a~p~ 188 (390)
+.+.+++ .|++|++++.|++|..+ ++++++|++.+ | +++.+|.||+++..
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEcC-CCEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 4556655 59999999999999864 45565576643 2 46899999998865
No 257
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=81.62 E-value=2.5 Score=43.02 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=41.3
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.++-.=.++.+++|++++++.+|+.|..+ ++. |.+++|..+.+|.+|+|+...
T Consensus 60 di~l~~~dwy~~~~i~L~~~~~v~~idr~--~k~--V~t~~g~~~~YDkLilATGS~ 112 (793)
T COG1251 60 DISLNRNDWYEENGITLYTGEKVIQIDRA--NKV--VTTDAGRTVSYDKLIIATGSY 112 (793)
T ss_pred HHhccchhhHHHcCcEEEcCCeeEEeccC--cce--EEccCCcEeecceeEEecCcc
Confidence 33333345667899999999999999983 443 778889999999999988653
No 258
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=81.10 E-value=4.8 Score=38.32 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=34.9
Q ss_pred HHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 140 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 140 ~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
+.+++.|.+++++++|++|..+ + +. |++ +|+++.+|++|+|+...
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~~-~-~~--v~~-~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDAE-A-QV--VKS-QGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHHHhCCCEEECCCEEEEEECC-C-CE--EEE-CCeEEeCCEEEECCCCC
Confidence 3345679999999999999974 3 33 554 57789999999999864
No 259
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=80.96 E-value=2.1 Score=41.84 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=32.1
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~ 372 (390)
.+|..+|||.+||-+.+. ..+..|+..|+.||..|...|
T Consensus 411 ~~Ts~~~VfA~GD~~~g~--~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 411 QRTSIPGVFAGGDIILGA--ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CccCCCCEEEecCCCCCc--HHHHHHHHHHHHHHHHHHhhC
Confidence 467789999999998542 577899999999999987754
No 260
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=80.54 E-value=6.4 Score=35.73 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=38.4
Q ss_pred chHHHHHHHHHc-CcEEEcCceeeEEEECCCCCEEEEEEc---CC--eEEEcCEEEEecCh
Q 016397 134 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPV 188 (390)
Q Consensus 134 l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~V~~~---~g--~~~~ad~VI~a~p~ 188 (390)
....+.+.+++. |+++++++.|++|..+ + ++..+++. +| +++.+|.||++++.
T Consensus 178 ~~~~~~~~l~~~~gv~~~~~~~v~~i~~~-~-~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 178 AEKILLDRLRKNPNIEFLWNSTVKEIVGD-N-KVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred cCHHHHHHHHhCCCeEEEeccEEEEEEcc-C-cEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 445667777777 9999999999999863 3 44445543 23 56889999998874
No 261
>PRK12831 putative oxidoreductase; Provisional
Probab=80.50 E-value=2.3 Score=41.76 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=30.2
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC-eEEEcCEEEEecChh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVD 189 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g-~~~~ad~VI~a~p~~ 189 (390)
+.+...+.+++.|++|++++.|.+ . |++.+. +.+.+|+||+|+...
T Consensus 193 ~~~~~~~~~~~~gv~i~~~~~v~~-------~---v~~~~~~~~~~~d~viiAtGa~ 239 (464)
T PRK12831 193 VVKKEIENIKKLGVKIETNVVVGK-------T---VTIDELLEEEGFDAVFIGSGAG 239 (464)
T ss_pred HHHHHHHHHHHcCCEEEcCCEECC-------c---CCHHHHHhccCCCEEEEeCCCC
Confidence 445555677788999999986621 1 223332 335699999999874
No 262
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=79.95 E-value=2.3 Score=43.69 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=35.0
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhhhhh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLA 376 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~~~ 376 (390)
.+|..++||.+||-..+. ..+..|+..|+.||..|...+...+
T Consensus 596 ~~Ts~~gVfA~GD~~~g~--~~vv~Ai~~Gr~AA~~i~~~l~~~~ 638 (639)
T PRK12809 596 TQTHLKKVFAGGDAVHGA--DLVVTAMAAGRQAARDMLTLFDTKA 638 (639)
T ss_pred cccCCCCEEEcCCCCCCc--hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456789999999987652 4678899999999999999886543
No 263
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=79.77 E-value=6.6 Score=38.36 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=44.1
Q ss_pred chHHHHHHHHHcC--cEEEcCceeeEEEECCCCCEEEEEEcCCeE--EEcCEEEEecChhhH
Q 016397 134 LCLPIVEHIQSLG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNV--IDGDAYVFATPVDIL 191 (390)
Q Consensus 134 l~~~l~~~l~~~G--~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~--~~ad~VI~a~p~~~~ 191 (390)
+-+.+..+++..+ -+|+.+++|+.+..++++....|++++|.. ++||.||+|+.....
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~ 145 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSE 145 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCC
Confidence 6677788887766 469999999999987765444588888755 459999999987433
No 264
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=79.75 E-value=2.9 Score=41.21 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 136 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 136 ~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
+...+.+.+.|+++++++.|.. .. .. +.....+|+||+|+...
T Consensus 197 ~~~~~~~~~~gv~~~~~~~v~~-~~---------~~-~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 197 DRRIELMEAEGIEFRTNVEVGK-DI---------TA-EELLAEYDAVFLGTGAY 239 (471)
T ss_pred HHHHHHHHhCCcEEEeCCEECC-cC---------CH-HHHHhhCCEEEEecCCC
Confidence 3444556677888888876532 10 00 11124689999998775
No 265
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=79.43 E-value=2.9 Score=40.77 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE-cCCeEEE--cCEEEEecChh
Q 016397 139 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL-TNGNVID--GDAYVFATPVD 189 (390)
Q Consensus 139 ~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~-~~g~~~~--ad~VI~a~p~~ 189 (390)
.+.+++.|+++++++.|++|+.+ ++.+ .++. .+|+.++ +|++|+|+...
T Consensus 63 ~~~~~~~gv~~~~~~~V~~id~~-~~~v-~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 63 PEEFIKSGIDVKTEHEVVKVDAK-NKTI-TVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred HHHHHHCCCeEEecCEEEEEECC-CCEE-EEEECCCCCEEEecCCEEEECCCCC
Confidence 45566789999999999999985 3333 2332 1255666 99999999864
No 266
>PRK07538 hypothetical protein; Provisional
Probab=79.05 E-value=6.4 Score=37.94 Aligned_cols=60 Identities=28% Similarity=0.431 Sum_probs=40.1
Q ss_pred chHHHHHHHHH-cC-cEEEcCceeeEEEECCCCCEEEEEEcCC-----eEEEcCEEEEecChh-hHhhhc
Q 016397 134 LCLPIVEHIQS-LG-GEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVD-ILKLQL 195 (390)
Q Consensus 134 l~~~l~~~l~~-~G-~~I~l~~~V~~I~~~~~g~v~~V~~~~g-----~~~~ad~VI~a~p~~-~~~~ll 195 (390)
|-+.|.+.+.+ .| .+|+++++|+++..++++.+ +.+.++ ++++||.||-|-..+ .+.+.+
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l 171 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQL 171 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEECCCCCHHHhhhh
Confidence 44556665544 46 46999999999998666633 444332 478999999988764 444443
No 267
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=78.96 E-value=3.6 Score=41.11 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=39.0
Q ss_pred cchHHHHHHHHHcC--cEEEcCceeeEEEECCC----CCEEEEEEcC-Ce--EEEcCEEEEecChhhHhh
Q 016397 133 RLCLPIVEHIQSLG--GEVRLNSRVQKIELNDD----GTVKNFLLTN-GN--VIDGDAYVFATPVDILKL 193 (390)
Q Consensus 133 ~l~~~l~~~l~~~G--~~I~l~~~V~~I~~~~~----g~v~~V~~~~-g~--~~~ad~VI~a~p~~~~~~ 193 (390)
.+.+-|..+.+.-+ ..|++||+|++|+..++ +++ .|++.+ |+ +..+|+||+|+.......
T Consensus 85 ~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W-~V~~~~~g~~~~~~fD~VvvatG~~~~P~ 153 (531)
T PF00743_consen 85 EVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKW-EVTTENDGKEETEEFDAVVVATGHFSKPN 153 (531)
T ss_dssp HHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEE-EEEETTTTEEEEEEECEEEEEE-SSSCES
T ss_pred HHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceE-EEEeecCCeEEEEEeCeEEEcCCCcCCCC
Confidence 45555555555444 46999999999998544 344 466644 43 346899999988755443
No 268
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=78.89 E-value=3.7 Score=34.82 Aligned_cols=51 Identities=29% Similarity=0.395 Sum_probs=36.0
Q ss_pred HHHHHHHHcCcEEEcCceeeEEEECCCCCE----EEE---EEcCCeEEEcCEEEEecCh
Q 016397 137 PIVEHIQSLGGEVRLNSRVQKIELNDDGTV----KNF---LLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 137 ~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v----~~V---~~~~g~~~~ad~VI~a~p~ 188 (390)
.+.+.+...+.+++++++|.+|... ++.+ ..+ ...++.++.+|+||+|+..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPE-SKRVVCPAVTIQVVETGDGREIKYDYLVIATGS 120 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEES-TTEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred ccccccccceEEEeecccccccccc-ccccccCcccceeeccCCceEecCCeeeecCcc
Confidence 4555556678999999999999985 3321 012 2234568999999999984
No 269
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=78.67 E-value=3.3 Score=40.75 Aligned_cols=47 Identities=21% Similarity=0.121 Sum_probs=29.5
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhH
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 191 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~ 191 (390)
+.+...+.+++.|.++++|+.|..- +.+.+ ....+|+||+|+.....
T Consensus 193 ~~~~~~~~~~~~Gv~~~~~~~v~~~----------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 193 VLSRRREIFTAMGIEFHLNCEVGRD----------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred HHHHHHHHHHHCCCEEECCCEeCCc----------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 3344556677789999999877321 11111 12368999999987543
No 270
>PLN02661 Putative thiazole synthesis
Probab=78.08 E-value=8.9 Score=36.01 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=39.8
Q ss_pred cchHHHHHHHH-HcCcEEEcCceeeEEEECCCCCEEEEEEc------CC--------eEEEcCEEEEecC
Q 016397 133 RLCLPIVEHIQ-SLGGEVRLNSRVQKIELNDDGTVKNFLLT------NG--------NVIDGDAYVFATP 187 (390)
Q Consensus 133 ~l~~~l~~~l~-~~G~~I~l~~~V~~I~~~~~g~v~~V~~~------~g--------~~~~ad~VI~a~p 187 (390)
.+...|.+.+. ..|++|+.++.|+.+..+ ++++.+|.+. ++ ..++|++||+|+.
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 44566776554 367999999999999985 5667777741 21 2579999999987
No 271
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=78.02 E-value=7.1 Score=42.37 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc----CCeEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT----NGNVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~----~g~~~~ad~VI~a~p~ 188 (390)
.+...+.+.|++.|++|++++.|++|..+ +.+.+|++. +++++.+|.|+++...
T Consensus 352 ~~~~~l~~~L~~~GV~i~~~~~v~~i~g~--~~v~~V~l~~~~g~~~~i~~D~V~va~G~ 409 (985)
T TIGR01372 352 DVSPEARAEARELGIEVLTGHVVAATEGG--KRVSGVAVARNGGAGQRLEADALAVSGGW 409 (985)
T ss_pred chhHHHHHHHHHcCCEEEcCCeEEEEecC--CcEEEEEEEecCCceEEEECCEEEEcCCc
Confidence 45566777888899999999999999853 345456554 4467899999998764
No 272
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=77.94 E-value=2.6 Score=37.85 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=30.8
Q ss_pred CCCeEEecccccCCC--C---CchhHHHHHHHHHHHHHHHHhhh
Q 016397 336 VEGFYLAGDYTKQKY--L---ASMEGAVLSGKLCAQAIVQDYVL 374 (390)
Q Consensus 336 ~~~l~~aGd~~~~~~--~---~~~~gA~~SG~~aA~~il~~~~~ 374 (390)
+||||+||-....-+ | ..+.+-+.||++||+.|+++++.
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 689999998765432 2 35678889999999999998864
No 273
>PRK02106 choline dehydrogenase; Validated
Probab=77.16 E-value=3.3 Score=41.82 Aligned_cols=50 Identities=4% Similarity=-0.059 Sum_probs=37.1
Q ss_pred HcCcEEEcCceeeEEEECCCCCEEEEEEcCC--e--EEEcCEEEEecChhhHhhh
Q 016397 144 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--N--VIDGDAYVFATPVDILKLQ 194 (390)
Q Consensus 144 ~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g--~--~~~ad~VI~a~p~~~~~~l 194 (390)
+.+.+|++++.|++|..+ ++++++|++.++ . .+.++.||++...-...+|
T Consensus 213 ~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~L 266 (560)
T PRK02106 213 RPNLTIVTHALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGAINSPQL 266 (560)
T ss_pred CCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHH
Confidence 456899999999999996 566888887543 1 3578999998876444444
No 274
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=77.08 E-value=2.4 Score=40.62 Aligned_cols=40 Identities=25% Similarity=0.388 Sum_probs=34.7
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
+.+.++|||.+||..... +++..|..+|..+|+.|+.+++
T Consensus 445 ~~t~i~gLy~aGdGAG~a--rgI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 445 LSTSIKGLYPAGDGAGLA--RGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred ceeeecceEEcccccccc--chhHHHhhhhHHHHHHHHHHhc
Confidence 567789999999987654 7899999999999999998765
No 275
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=76.78 E-value=9 Score=37.52 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCC--eEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.+++. .+|+++++|++|..+++..++ ++..+| +++.+|.||+++..
T Consensus 211 ~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~-~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 211 EVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVE-ELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred HHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEE-EEEcCCceEEEEeCEEEEccCC
Confidence 3455666777777 999999999999874332232 333233 46899999998765
No 276
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=76.16 E-value=3 Score=37.31 Aligned_cols=38 Identities=29% Similarity=0.380 Sum_probs=29.9
Q ss_pred CCCeEEecccccCCC--C---CchhHHHHHHHHHHHHHHHHhh
Q 016397 336 VEGFYLAGDYTKQKY--L---ASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 336 ~~~l~~aGd~~~~~~--~---~~~~gA~~SG~~aA~~il~~~~ 373 (390)
+||||+||-....-+ | ..+.+-+.||++||+.|+++++
T Consensus 212 ~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 212 VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 689999998765432 2 3567888999999999998863
No 277
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=75.93 E-value=3 Score=41.07 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=38.0
Q ss_pred HHHHHHHHHc-CcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhhh
Q 016397 136 LPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 194 (390)
Q Consensus 136 ~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~l 194 (390)
..|.+.|+.. +..| ....|+.+..+++.+|++|.+.+|..+.|++||+|+....--++
T Consensus 104 ~~mk~~le~~~NL~l-~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 104 RAMKNELENQPNLHL-LQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred HHHHHHHhcCCCcee-hHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccccceE
Confidence 3344445432 2333 34456677764333588999999999999999999987554444
No 278
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=75.10 E-value=4.4 Score=37.18 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=75.5
Q ss_pred ccCccHHHHHHHcCCChHHHHHHHHHHHHhccCCCcccccHHHHHHHH------HHHhcccCCceEEeecCCCCccchHH
Q 016397 64 QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIAL------NRFLQEKHGSKMAFLDGNPPERLCLP 137 (390)
Q Consensus 64 ~d~~s~~e~l~~~g~~~~~~~~~~~p~~~~~~~~~~~~~Sa~~~~~~l------~~~~~~~~~~~~~~~~GG~~~~l~~~ 137 (390)
.+-.++.+=..+. +++.+++.|+.++...-||.+|+++.+.....+= .+++... --+.|++|+ ..+.+.
T Consensus 129 ~~~q~~ee~ais~-vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~---yQGlP~~GY-T~~~~k 203 (374)
T COG0562 129 AEPQNLEEQAISL-VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDT---YQGLPKDGY-TAMFEK 203 (374)
T ss_pred cchhhhhhHHHHH-HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcc---cccCccccH-HHHHHH
Confidence 4456777777777 8899999999999999999999999997654311 1112111 125799998 567777
Q ss_pred HHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhhh
Q 016397 138 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 194 (390)
Q Consensus 138 l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~l 194 (390)
|++ ....+|+|||.-..|... . ++ +.+..||.|.|.+.+-.-
T Consensus 204 Ml~---hp~I~V~Lntd~~~~~~~-~---------~~--~~~~~VvytG~iD~~Fdy 245 (374)
T COG0562 204 MLD---HPNIDVRLNTDFFDVKDQ-L---------RA--IPFAPVVYTGPIDAYFDY 245 (374)
T ss_pred Hhc---CCCceEEecCcHHHHhhh-h---------cc--cCCCceEEecchHhhhcc
Confidence 663 346789999876555431 1 11 345589999988766443
No 279
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=75.01 E-value=8 Score=38.11 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC--C--eEEEcCEEEEecCh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--G--NVIDGDAYVFATPV 188 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~--g--~~~~ad~VI~a~p~ 188 (390)
.+.+.+.+.|++. .+|++++.|++|..++++ + .|++.+ | +++.+|.||+++..
T Consensus 216 ~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~-~-~v~~~~~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 216 DIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG-I-YVTMEGKKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred HHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE-E-EEEEEeCCCcceEEEeCEEEEeecc
Confidence 3455666777777 999999999999875443 4 355443 2 36899999999876
No 280
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=74.64 E-value=4.9 Score=38.77 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 136 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 136 ~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
.+.-+..++.|.++++++.|++++.. +. .|.+.+|+++.++.+|+|+..
T Consensus 131 ~r~~e~Yke~gIe~~~~t~v~~~D~~-~K---~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 131 KRTPEFYKEKGIELILGTSVVKADLA-SK---TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred ccChhhHhhcCceEEEcceeEEeecc-cc---EEEeCCCceeecceEEEeecC
Confidence 33344567889999999999999984 33 377889999999999999877
No 281
>PRK13984 putative oxidoreductase; Provisional
Probab=74.62 E-value=4.3 Score=41.39 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=32.6
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
.+|+.+|||.+||-+.. ..+-.|+..|+.||..|...+.
T Consensus 564 ~~Ts~~gVfAaGD~~~~---~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 564 GQTSIPWLFAGGDIVHG---PDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CccCCCCEEEecCcCCc---hHHHHHHHHHHHHHHHHHHHhc
Confidence 56778999999999865 3567799999999999998774
No 282
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=74.40 E-value=11 Score=38.82 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=37.1
Q ss_pred chHHHHHHH-HHcCcEEEcCceeeEEEECCCCCEEEEEEcC-------C--------eEEEcCEEEEecChh
Q 016397 134 LCLPIVEHI-QSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-------G--------NVIDGDAYVFATPVD 189 (390)
Q Consensus 134 l~~~l~~~l-~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~-------g--------~~~~ad~VI~a~p~~ 189 (390)
+.+.+.+.+ ++.|++|++++.|++|..++++....|.+.+ + +++++|.||+|+...
T Consensus 355 is~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 355 VAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 344455544 5689999999999999875433211243321 1 268999999998753
No 283
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=74.26 E-value=14 Score=32.13 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=43.7
Q ss_pred eecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc-----------CCeEEEcCEEEEecChh
Q 016397 125 FLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-----------NGNVIDGDAYVFATPVD 189 (390)
Q Consensus 125 ~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~-----------~g~~~~ad~VI~a~p~~ 189 (390)
|..... .++..|+...-+.|.+|..++.|+.|...++.+|++|.++ |--+++++.||-||..+
T Consensus 104 ~v~ds~--e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 104 YVADSA--EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred EEecHH--HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 444442 4555665555577999999999999988544357787763 22367888888888664
No 284
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=73.91 E-value=3 Score=36.08 Aligned_cols=38 Identities=29% Similarity=0.410 Sum_probs=30.2
Q ss_pred CCCeEEecccccCCC--C---CchhHHHHHHHHHHHHHHHHhh
Q 016397 336 VEGFYLAGDYTKQKY--L---ASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 336 ~~~l~~aGd~~~~~~--~---~~~~gA~~SG~~aA~~il~~~~ 373 (390)
.||||+||-.+..-| | ..+.+-+.||+.||+.|++++.
T Consensus 218 ~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 218 YPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred cCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 689999998764332 2 3578889999999999999875
No 285
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=73.80 E-value=4.4 Score=40.08 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=33.0
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
..|..+|||.+||-+.+. ..+..|+..|+.||..|...+.
T Consensus 440 ~~Ts~~gVfAaGD~~~g~--~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 440 YSTSIPGVFAAGDCRRGQ--SLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred ceECCCCEEEeeccCCCc--HHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999987542 4677899999999999998874
No 286
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=73.29 E-value=5.9 Score=37.27 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~ 372 (390)
.++..++||.+||-+.. +..+..|+..|..||..|.+.+
T Consensus 311 ~~t~~~~vyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 311 HMTSREGVFAAGDVVTG--PSKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred cccCCCCEEEEcccccC--cchHHHHHHHHHHHHHHHHHHH
Confidence 34567899999998763 2578899999999999998776
No 287
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=72.92 E-value=9.5 Score=40.10 Aligned_cols=38 Identities=32% Similarity=0.364 Sum_probs=29.7
Q ss_pred CCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 334 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
|..+|||.+||-..+. ..+..|+.+|+.||..|.+.+.
T Consensus 713 Ts~~gVfA~GD~~~g~--~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 713 SSIPGIYAGGDIVRGG--ATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCEEEeCCccCCc--HHHHHHHHHHHHHHHHHHHHhc
Confidence 4467899999987642 4678899999999999887763
No 288
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=72.79 E-value=4.3 Score=43.65 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=34.7
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 374 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~ 374 (390)
..|..+|||.+||-..+. ..+-.|+..|+.||..|...++-
T Consensus 588 ~~Ts~pgVFAaGD~~~G~--~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 588 QRTSIKGVYSGGDAARGG--STAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred CccCCCCEEEEEcCCCCh--HHHHHHHHHHHHHHHHHHHHhcc
Confidence 456789999999998753 47889999999999999988864
No 289
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=72.63 E-value=5 Score=39.32 Aligned_cols=45 Identities=27% Similarity=0.274 Sum_probs=28.9
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
+.+...+.+++.|+++++++.|.. . +++.++. +.+|+||+|+...
T Consensus 192 ~~~~~~~~l~~~gv~~~~~~~v~~-------~---v~~~~~~-~~~d~vvlAtGa~ 236 (457)
T PRK11749 192 IVDREVERLLKLGVEIRTNTEVGR-------D---ITLDELR-AGYDAVFIGTGAG 236 (457)
T ss_pred HHHHHHHHHHHcCCEEEeCCEECC-------c---cCHHHHH-hhCCEEEEccCCC
Confidence 445555666777888888887621 1 2223332 6789999998864
No 290
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=71.79 E-value=5.7 Score=43.10 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=34.6
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 374 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~ 374 (390)
.+|..+|||.+||-+.+. ..+..|+..|+.||..|...+..
T Consensus 716 ~~Ts~pgVFAaGDv~~G~--~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVTGG--ATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred cCCCCCCEEEecCcCCCc--cHHHHHHHHHHHHHHHHHHHHhc
Confidence 467789999999987652 57889999999999999988753
No 291
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=71.73 E-value=10 Score=36.73 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=32.7
Q ss_pred HHHcCcEEEcCceeeEEEECCCCCEEEEEEc-CCeEEE--cCEEEEecCh
Q 016397 142 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGNVID--GDAYVFATPV 188 (390)
Q Consensus 142 l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~~~~--ad~VI~a~p~ 188 (390)
+.+.|.++++++.|++|..+ ++.+. +... +++++. +|+||+|+..
T Consensus 54 ~~~~gv~~~~~~~V~~id~~-~~~v~-~~~~~~~~~~~~~yd~lIiATG~ 101 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDE-RQTVV-VRNNKTNETYEESYDYLILSPGA 101 (427)
T ss_pred HHhcCCeEEecCEEEEEECC-CCEEE-EEECCCCCEEecCCCEEEECCCC
Confidence 36679999999999999874 44332 3322 245677 9999999986
No 292
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=71.72 E-value=9.7 Score=37.10 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=48.4
Q ss_pred EeecCCCCccchHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEEcCC----eEEEcCEEEEecCh
Q 016397 124 AFLDGNPPERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPV 188 (390)
Q Consensus 124 ~~~~GG~~~~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g----~~~~ad~VI~a~p~ 188 (390)
....|..+..+...|.+.+++ .+.+|.-++.+.+|..+++..+++|.+.+. .++.++.||+|+..
T Consensus 125 lH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 125 LHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred EEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 334555456788889888875 689999999999999865424557777543 46788999998864
No 293
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=71.54 E-value=13 Score=38.24 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=34.9
Q ss_pred HHHcCcEEEcCceeeEEEECCCCCEEEEEE---c------C---------C--eEEEcCEEEEecCh
Q 016397 142 IQSLGGEVRLNSRVQKIELNDDGTVKNFLL---T------N---------G--NVIDGDAYVFATPV 188 (390)
Q Consensus 142 l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~---~------~---------g--~~~~ad~VI~a~p~ 188 (390)
+++.|++|++++.+++|..+++|++++|++ . + | .++.+|.||+|+..
T Consensus 499 a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~ 565 (639)
T PRK12809 499 AREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGF 565 (639)
T ss_pred HHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCC
Confidence 456799999999999998765676765543 1 1 2 26789999999874
No 294
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=71.15 E-value=12 Score=35.15 Aligned_cols=51 Identities=24% Similarity=0.177 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc--------------------CCeEEEcCEEEEecCh
Q 016397 136 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--------------------NGNVIDGDAYVFATPV 188 (390)
Q Consensus 136 ~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~--------------------~g~~~~ad~VI~a~p~ 188 (390)
..+.+.|+++|++|++++.|++|+.+ +++..|++. +++.+.+|.||+++..
T Consensus 214 ~~~~~~l~~~gi~i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~ 284 (352)
T PRK12770 214 KYEIERLIARGVEFLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE 284 (352)
T ss_pred HHHHHHHHHcCCEEeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc
Confidence 45566788899999999999999853 334334421 2347899999998875
No 295
>PRK10262 thioredoxin reductase; Provisional
Probab=70.76 E-value=3.3 Score=38.39 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=34.6
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhhhhh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLA 376 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~~~ 376 (390)
.+|..+|||.|||-+...+ ..+-.|+-.|..||..|...+...+
T Consensus 275 ~~t~~~~VyA~GD~~~~~~-~~~~~A~~~g~~Aa~~~~~~l~~~~ 318 (321)
T PRK10262 275 TQTSIPGVFAAGDVMDHIY-RQAITSAGTGCMAALDAERYLDGLA 318 (321)
T ss_pred cccCCCCEEECeeccCCCc-ceEEEEehhHHHHHHHHHHHHHhcc
Confidence 4678899999999886533 2455589999999999998886544
No 296
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=70.12 E-value=33 Score=34.01 Aligned_cols=72 Identities=24% Similarity=0.277 Sum_probs=45.6
Q ss_pred EEeecCCCC-ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC---Ce--EEEcCEEEEecCh--hhHhhh
Q 016397 123 MAFLDGNPP-ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPV--DILKLQ 194 (390)
Q Consensus 123 ~~~~~GG~~-~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~---g~--~~~ad~VI~a~p~--~~~~~l 194 (390)
+.|..|-.. .++.-.++=-...+|..+.-..+|.++..+++|++.++...| |+ .+.|..||-|+.+ +.+.++
T Consensus 214 ~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 214 MVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKM 293 (680)
T ss_pred EEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhh
Confidence 456655432 233333332233578888778899999998888776666654 54 4678889998765 344444
No 297
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=70.00 E-value=5.9 Score=40.04 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=33.6
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
..+..+|||.+||-..+ +..+..|+..|+.||..|...+.
T Consensus 405 ~~ts~~~Vfa~GD~~~g--~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 405 MMTGRPGVFAGGDMVPG--PRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred ccCCCCCEEeccCcCCC--chHHHHHHHHHHHHHHHHHHHHc
Confidence 45668999999998764 25788999999999999988885
No 298
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=69.96 E-value=15 Score=36.77 Aligned_cols=52 Identities=8% Similarity=0.169 Sum_probs=37.5
Q ss_pred HHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEEEcC---C--eEEEcCEEEEecCh
Q 016397 136 LPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPV 188 (390)
Q Consensus 136 ~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~~~~---g--~~~~ad~VI~a~p~ 188 (390)
..+.+.+.+ .|++|++++.|++|..+ ++++++|++.+ | +++.+|.|++++..
T Consensus 390 ~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~ 447 (517)
T PRK15317 390 QVLQDKLRSLPNVTIITNAQTTEVTGD-GDKVTGLTYKDRTTGEEHHLELEGVFVQIGL 447 (517)
T ss_pred HHHHHHHhcCCCcEEEECcEEEEEEcC-CCcEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence 344555654 58999999999999864 45665666643 3 35889999998765
No 299
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=69.77 E-value=6.4 Score=41.37 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=30.2
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
+.+...+.+++.|++|++++.|. .. |++.+.....+|+||+|+...
T Consensus 483 ~~~~~~~~l~~~gv~~~~~~~v~-------~~---v~~~~l~~~~ydavvlAtGa~ 528 (752)
T PRK12778 483 IVDVEIENLKKLGVKFETDVIVG-------KT---ITIEELEEEGFKGIFIASGAG 528 (752)
T ss_pred HHHHHHHHHHHCCCEEECCCEEC-------Cc---CCHHHHhhcCCCEEEEeCCCC
Confidence 34444566777899999987651 11 334444445689999999874
No 300
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=69.65 E-value=8.7 Score=33.38 Aligned_cols=70 Identities=23% Similarity=0.372 Sum_probs=47.3
Q ss_pred EeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhhhcCc
Q 016397 124 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 197 (390)
Q Consensus 124 ~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~ll~~ 197 (390)
+||.|=.+-.|.+.|.++-++.|-+|... .|.+++.+. .-. .+.+ +.+.+.+|+||+|+.+.+-.--+|.
T Consensus 62 GFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss-kpF-~l~t-d~~~v~~~avI~atGAsAkRl~~pg 131 (322)
T KOG0404|consen 62 GFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS-KPF-KLWT-DARPVTADAVILATGASAKRLHLPG 131 (322)
T ss_pred CCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC-CCe-EEEe-cCCceeeeeEEEecccceeeeecCC
Confidence 46665433578899988887788887654 578888742 224 3555 5557899999999987553322554
No 301
>PTZ00367 squalene epoxidase; Provisional
Probab=69.64 E-value=1.3e+02 Score=30.45 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=28.1
Q ss_pred CCCeEEecccccCCCC---CchhHHHHHHHHHHHHHH
Q 016397 336 VEGFYLAGDYTKQKYL---ASMEGAVLSGKLCAQAIV 369 (390)
Q Consensus 336 ~~~l~~aGd~~~~~~~---~~~~gA~~SG~~aA~~il 369 (390)
.+|+.+.||..+.-+| .|++-|+..+...|+.+.
T Consensus 336 ~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~ 372 (567)
T PTZ00367 336 IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLT 372 (567)
T ss_pred CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHH
Confidence 3689999999887776 588889999888887775
No 302
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=68.18 E-value=7.2 Score=40.18 Aligned_cols=40 Identities=28% Similarity=0.252 Sum_probs=33.3
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
..|..+|||.+||-..+ +..+..|+..|+.||..|...+.
T Consensus 462 ~~Ts~pgVfA~GDv~~g--~~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 462 LQTSVAGVFAGGDCVTG--ADIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred CcCCCCCEEEcCCcCCC--chHHHHHHHHHHHHHHHHHHHHc
Confidence 45678999999998764 24678899999999999998885
No 303
>PLN02661 Putative thiazole synthesis
Probab=67.40 E-value=6.3 Score=37.00 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=31.3
Q ss_pred CCCeEEecccccCCC--C---CchhHHHHHHHHHHHHHHHHhhh
Q 016397 336 VEGFYLAGDYTKQKY--L---ASMEGAVLSGKLCAQAIVQDYVL 374 (390)
Q Consensus 336 ~~~l~~aGd~~~~~~--~---~~~~gA~~SG~~aA~~il~~~~~ 374 (390)
+||||+||-....-+ | ..+.+-+.||++||+.|+++++.
T Consensus 286 ~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 286 VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 689999998765332 2 35788899999999999999973
No 304
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=66.93 E-value=22 Score=30.92 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=43.4
Q ss_pred EeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc-----------CCeEEEcCEEEEecChh
Q 016397 124 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-----------NGNVIDGDAYVFATPVD 189 (390)
Q Consensus 124 ~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~-----------~g~~~~ad~VI~a~p~~ 189 (390)
.|...+. .+...|+...-+.|.+|...+.|+.+...+++++.+|.++ |--+++++.||-|+..+
T Consensus 90 ~~v~d~~--~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 90 YYVADSV--EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp EEES-HH--HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred EEEEcHH--HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 4555553 4556665555568999999999999988654678888774 22378999999999654
No 305
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=66.63 E-value=21 Score=34.52 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=26.2
Q ss_pred CCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 016397 335 PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 335 ~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~ 372 (390)
..+||||||+-+.. .|-+.|..+|..|+..+...+
T Consensus 329 ~~~~l~~AGqi~g~---~Gy~ea~a~G~~Ag~n~~~~~ 363 (436)
T PRK05335 329 KRPNLFFAGQITGV---EGYVESAASGLLAGINAARLA 363 (436)
T ss_pred CCCCEEeeeeecCc---hHHHHHHHHHHHHHHHHHHHh
Confidence 36899999998876 355677788888887665544
No 306
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=66.15 E-value=7.8 Score=36.84 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=30.2
Q ss_pred CCCCCeEEecccccCCCC-C--chhHHHHHHHHHHHHHHHHh
Q 016397 334 SPVEGFYLAGDYTKQKYL-A--SMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~~~-~--~~~gA~~SG~~aA~~il~~~ 372 (390)
.-++||||||+-++-..+ + .+.-|..||+.|++.+.+.+
T Consensus 334 k~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 334 KARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred ccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 347999999998765422 3 37889999999999887654
No 307
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=65.72 E-value=17 Score=39.46 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=37.0
Q ss_pred HHHHHcCcEEEcCceeeEEEECCCCCEEEEEEc-----------------CC--eEEEcCEEEEecCh
Q 016397 140 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-----------------NG--NVIDGDAYVFATPV 188 (390)
Q Consensus 140 ~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~-----------------~g--~~~~ad~VI~a~p~ 188 (390)
+.+++.|++|++++.+.+|..+++|++++|++. +| .++.+|.||+|+..
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~ 684 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGT 684 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCc
Confidence 345678999999999999987667777666542 12 25899999999864
No 308
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=65.06 E-value=12 Score=35.52 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=33.2
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
+-+.+.+.+ +..|+++++|++|. +++ + ++++|++++||.||-|.+.+
T Consensus 91 f~~~l~~~l---~~~i~~~~~V~~v~--~~~-v---~l~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 91 FHEGLLQAF---PEGVILGRKAVGLD--ADG-V---DLAPGTRINARSVIDCRGFK 137 (370)
T ss_pred HHHHHHHhh---cccEEecCEEEEEe--CCE-E---EECCCCEEEeeEEEECCCCC
Confidence 344444433 33488899999994 333 3 44688899999999999875
No 309
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.95 E-value=15 Score=34.30 Aligned_cols=64 Identities=27% Similarity=0.261 Sum_probs=46.2
Q ss_pred CCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh-hhHhhh
Q 016397 130 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV-DILKLQ 194 (390)
Q Consensus 130 ~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~-~~~~~l 194 (390)
+.+.+.+-+.+.++..|.++|.++.|+++....+|-. .+.+..|....+|.++.|+.- +..+.|
T Consensus 228 FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L 292 (478)
T KOG0405|consen 228 FDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGL 292 (478)
T ss_pred hhHHHHHHHHHHhhhcceeecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccc
Confidence 3345566677888888999999999999998777743 245556754558999999864 344443
No 310
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=64.55 E-value=15 Score=35.84 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=31.2
Q ss_pred HHcCcEEEcCceeeEEEECCCCCEEEEEEcC-Ce--EEEcCEEEEecChh
Q 016397 143 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGDAYVFATPVD 189 (390)
Q Consensus 143 ~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~-g~--~~~ad~VI~a~p~~ 189 (390)
+..|.+++++++|++|..+ ++.+ .+...+ ++ ++.+|++|+|+...
T Consensus 69 ~~~~i~v~~~~~V~~Id~~-~~~v-~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDE-RQTV-TVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred HhCCCEEEeCCEEEEEECC-CCEE-EEEECCCCcEEeeecCEEEECCCCC
Confidence 4468999999999999984 4433 233222 22 36889999998764
No 311
>PRK06116 glutathione reductase; Validated
Probab=62.93 E-value=11 Score=36.73 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=30.7
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
..++..+|||.+||-+.. . .....|+..|+.||+.|+.
T Consensus 290 ~~~Ts~~~IyA~GD~~~~-~-~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 290 YQNTNVPGIYAVGDVTGR-V-ELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCCcCCCCEEEEeecCCC-c-CcHHHHHHHHHHHHHHHhC
Confidence 346778999999998754 2 4678999999999999864
No 312
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=62.77 E-value=10 Score=40.78 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=33.0
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
.++..+|||.+||-..+ |..+..|+..|+.||..|++..+
T Consensus 803 lqTs~pgVFAaGD~a~G--p~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 803 GETSLTNVYMIGDVQRG--PSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred cccCCCCEEEEeccccC--chHHHHHHHHHHHHHHHHhhhcC
Confidence 45667999999998753 36888999999999999987554
No 313
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=62.54 E-value=8.7 Score=37.73 Aligned_cols=41 Identities=12% Similarity=0.292 Sum_probs=31.0
Q ss_pred CCCCCCeEEecccccC-----CCC--CchhHHHHHHHHHHHHHHHHhh
Q 016397 333 RSPVEGFYLAGDYTKQ-----KYL--ASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~-----~~~--~~~~gA~~SG~~aA~~il~~~~ 373 (390)
.+|++|||-||+-+.+ .|+ .++..|+.+|+.|++.+.+...
T Consensus 415 g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~ 462 (466)
T PRK08274 415 GRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQ 462 (466)
T ss_pred CCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 3589999999986533 233 3678889999999999877543
No 314
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=62.28 E-value=11 Score=37.91 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=39.0
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+.+.+.+.+++.|++++ +++|++|..++ . ...|.+.+| .+.+|.||+|+...
T Consensus 61 ~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~-~-~~~V~~~~g-~~~a~~lVlATGa~ 113 (555)
T TIGR03143 61 ELMQEMRQQAQDFGVKFL-QAEVLDVDFDG-D-IKTIKTARG-DYKTLAVLIATGAS 113 (555)
T ss_pred HHHHHHHHHHHHcCCEEe-ccEEEEEEecC-C-EEEEEecCC-EEEEeEEEECCCCc
Confidence 466777777777889885 78899998743 2 224666655 58999999999874
No 315
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=61.87 E-value=12 Score=36.51 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=30.5
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.+|..+|||.+||.+... ...+-|+..|+.||+.|+.
T Consensus 291 ~~T~~p~IyAiGD~~~~~--~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGKV--ELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CcCCCCCEEEEEecCCCc--ccHHHHHHHHHHHHHHHhc
Confidence 566789999999988642 4678899999999999863
No 316
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=61.80 E-value=9.2 Score=41.25 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=32.1
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~ 372 (390)
..+..+|||.+||-..+ |..+..|+..|+.||..|++..
T Consensus 801 ~~Ts~pgVFAaGD~a~G--P~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 801 GETNITNVFVIGDANRG--PATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred CccCCCCEEEEeCcCCC--ccHHHHHHHHHHHHHHHHhccc
Confidence 45677999999998653 3688999999999999998643
No 317
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=61.63 E-value=24 Score=37.91 Aligned_cols=57 Identities=9% Similarity=0.055 Sum_probs=40.5
Q ss_pred ccchHHHHHHHHHc----CcEEEcCceeeEEEECCCCCEEEEEE---cCCe--EEEcCEEEEecChh
Q 016397 132 ERLCLPIVEHIQSL----GGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 132 ~~l~~~l~~~l~~~----G~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 189 (390)
..+...|.+.+.+. ++++..++.++++..+ +|+++||.. .+|+ .+.|+.||+|+...
T Consensus 139 ~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 204 (897)
T PRK13800 139 KDVKKALYRVLRQRSMRERIRIENRLMPVRVLTE-GGRAVGAAALNTRTGEFVTVGAKAVILATGPC 204 (897)
T ss_pred hhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEee-CCEEEEEEEEecCCCcEEEEECCEEEECCCcc
Confidence 56778888877654 4566666667788764 677777764 3564 57899999998753
No 318
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=60.56 E-value=29 Score=35.06 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=33.2
Q ss_pred HHHcCcEEEcCceeeEEEECCCCCEEEEEE---------c-------CC--eEEEcCEEEEecChh
Q 016397 142 IQSLGGEVRLNSRVQKIELNDDGTVKNFLL---------T-------NG--NVIDGDAYVFATPVD 189 (390)
Q Consensus 142 l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~---------~-------~g--~~~~ad~VI~a~p~~ 189 (390)
..+.|++|++++.+++|..++++.+ +|++ . +| .++.+|.||+|+...
T Consensus 315 a~~~GVki~~~~~~~~i~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~ 379 (564)
T PRK12771 315 ALREGVEINWLRTPVEIEGDENGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD 379 (564)
T ss_pred HHHcCCEEEecCCcEEEEcCCCCEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC
Confidence 3467999999999999987545533 3322 1 12 368899999998753
No 319
>PRK13984 putative oxidoreductase; Provisional
Probab=60.55 E-value=24 Score=36.04 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=33.3
Q ss_pred HHcCcEEEcCceeeEEEECCCCCEEEEEEc--------CC-----------eEEEcCEEEEecChh
Q 016397 143 QSLGGEVRLNSRVQKIELNDDGTVKNFLLT--------NG-----------NVIDGDAYVFATPVD 189 (390)
Q Consensus 143 ~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~--------~g-----------~~~~ad~VI~a~p~~ 189 (390)
.+.|++|++++.+++|.. +++++++|++. +| .++.+|.||+|+...
T Consensus 473 ~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~ 537 (604)
T PRK13984 473 LEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQA 537 (604)
T ss_pred HHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCC
Confidence 357999999999999875 35666555542 12 368999999998753
No 320
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=60.09 E-value=17 Score=35.22 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=31.9
Q ss_pred CCCCCeEEecccccCC---CCCchhHHHHHHHHHHHHHHHHhh
Q 016397 334 SPVEGFYLAGDYTKQK---YLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~---~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
+..+|||.+||..... +|....-|+.+|..+|+.|.+.+.
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 4679999999988642 344667799999999999988863
No 321
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=59.66 E-value=12 Score=35.12 Aligned_cols=43 Identities=30% Similarity=0.383 Sum_probs=27.9
Q ss_pred CcEEEcCceeeEEEECCCC--CEEEEEEc----CCeEEEcCEEEEecCh
Q 016397 146 GGEVRLNSRVQKIELNDDG--TVKNFLLT----NGNVIDGDAYVFATPV 188 (390)
Q Consensus 146 G~~I~l~~~V~~I~~~~~g--~v~~V~~~----~g~~~~ad~VI~a~p~ 188 (390)
+..++++++|++|...+++ ....|++. +++++.|++||+++..
T Consensus 109 ~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 109 DNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp TTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred CCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 3449999999999986543 12246663 3468899999998763
No 322
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=59.47 E-value=2.2e+02 Score=30.07 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=35.4
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhh-Hhhhc
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 195 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~-~~~ll 195 (390)
..|.+.|.+.+.+.|++|+++++|+++... ..++|.||.|..... +.+.+
T Consensus 97 ~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~--------------~~~~D~VVgADG~~S~vR~~~ 147 (765)
T PRK08255 97 KRLLNILQARCEELGVKLVFETEVPDDQAL--------------AADADLVIASDGLNSRIRTRY 147 (765)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCccCchhhh--------------hcCCCEEEEcCCCCHHHHHHH
Confidence 346777888888889999999988765420 146899999888643 33433
No 323
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=59.27 E-value=25 Score=35.43 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=34.3
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhhhhhh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAA 377 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~~~~ 377 (390)
+++..+|||.+||-+.... ..+..|+..|..||..|...+.....
T Consensus 269 ~~Ts~p~IyAaGDv~~~~~-~~v~~A~~~G~~Aa~~i~~~l~~~~~ 313 (555)
T TIGR03143 269 METNVPGVYAAGDLRPKEL-RQVVTAVADGAIAATSAERYVKELKE 313 (555)
T ss_pred cccCCCCEEEceeccCCCc-chheeHHhhHHHHHHHHHHHHHhhhh
Confidence 4567899999999765322 35678999999999999887765443
No 324
>PLN02785 Protein HOTHEAD
Probab=58.54 E-value=23 Score=35.96 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=29.0
Q ss_pred CCCCeEEecccccCCCCC--chhHHHHHHHHHHHHHHHHh
Q 016397 335 PVEGFYLAGDYTKQKYLA--SMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 335 ~~~~l~~aGd~~~~~~~~--~~~gA~~SG~~aA~~il~~~ 372 (390)
.++||+++=.++-+.-|+ ..--++.-|+++|+.|+++.
T Consensus 541 GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~ 580 (587)
T PLN02785 541 GVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRER 580 (587)
T ss_pred ccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 468999997777665443 34557888999999999874
No 325
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=58.52 E-value=15 Score=35.94 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=31.1
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
..+|..+|||.+||-+... .....|+..|+.||+.|+.
T Consensus 288 ~~~Ts~~~IyA~GD~~~~~--~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 288 YSRTSIPSIYAVGDVTDRI--NLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CCccCCCCEEEeeccCCCc--cchhHHHHHHHHHHHHHhc
Confidence 4567789999999998642 4678899999999998874
No 326
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=57.04 E-value=14 Score=37.27 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=29.6
Q ss_pred CCCCCeEEecccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 016397 334 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~-~~------~~~~gA~~SG~~aA~~il~~~ 372 (390)
++++|||-||+-+.++ |. .++-.|+.+|++|++.+....
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~ 396 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYA 396 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhh
Confidence 6799999999976422 22 157789999999999886643
No 327
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=56.93 E-value=15 Score=37.42 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=30.2
Q ss_pred CCCCCCeEEecccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 016397 333 RSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~~-~~------~~~~gA~~SG~~aA~~il~~~ 372 (390)
.++++|||-||+-..++ |. .++-.|+..|++|++.+.+..
T Consensus 382 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 428 (598)
T PRK09078 382 DAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVI 428 (598)
T ss_pred CCccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 36799999999976422 21 267789999999999887653
No 328
>PRK12839 hypothetical protein; Provisional
Probab=56.42 E-value=13 Score=37.75 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=31.8
Q ss_pred CCCCCCCeEEecccccC----CCC---CchhHHHHHHHHHHHHHHHHhh
Q 016397 332 QRSPVEGFYLAGDYTKQ----KYL---ASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~----~~~---~~~~gA~~SG~~aA~~il~~~~ 373 (390)
..+||+|||-||+.+.. .|| .++..|+.+|+.|++.+.+..+
T Consensus 521 dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~~ 569 (572)
T PRK12839 521 DDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGSTG 569 (572)
T ss_pred CCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhccc
Confidence 34689999999985432 353 2678899999999999876544
No 329
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=56.23 E-value=14 Score=40.06 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=32.6
Q ss_pred CCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 016397 334 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 374 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~ 374 (390)
+..+|||.|||-+.. .++..|+.+|..||..|+.+++.
T Consensus 436 t~v~gVyaaGD~~g~---~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 436 DAVQGCILAGAANGL---FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCCCeEEeeccCCc---cCHHHHHHHHHHHHHHHHHHcCC
Confidence 447899999997754 57888999999999999988875
No 330
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=55.62 E-value=14 Score=34.14 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=35.0
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 374 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~ 374 (390)
..+|.++|||-|||-....+. -+..|+-.|..||..+.+.+..
T Consensus 260 ~~~TsvpGifAaGDv~~~~~r-qi~ta~~~G~~Aa~~a~~~l~~ 302 (305)
T COG0492 260 EMETSVPGIFAAGDVADKNGR-QIATAAGDGAIAALSAERYLES 302 (305)
T ss_pred CcccCCCCEEEeEeeccCccc-EEeehhhhHHHHHHHHHHHhhh
Confidence 478899999999999887542 5777888999999888877654
No 331
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=55.36 E-value=17 Score=34.65 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=25.4
Q ss_pred CCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 016397 336 VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 336 ~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~ 372 (390)
++||||||+-+.. .|-+.|..+|..|+..+...+
T Consensus 355 ~~~lf~AGqi~G~---~Gy~eaaa~G~~ag~na~~~~ 388 (392)
T PF01134_consen 355 IPGLFFAGQINGT---EGYEEAAAQGLIAGINAARRL 388 (392)
T ss_dssp SBTEEE-GGGGTB----SHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceECCCCcch---hHHHHHHHHHHHHHHHHHHHH
Confidence 7899999998877 456777779998887666544
No 332
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=55.12 E-value=13 Score=37.78 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=32.0
Q ss_pred CCCCCCCeEEeccccc----CCCC---CchhHHHHHHHHHHHHHHHHhhhh
Q 016397 332 QRSPVEGFYLAGDYTK----QKYL---ASMEGAVLSGKLCAQAIVQDYVLL 375 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~----~~~~---~~~~gA~~SG~~aA~~il~~~~~~ 375 (390)
..+||+|||-||+.+. ..|+ .++..|+.+|+.|++.+.+...-.
T Consensus 524 ~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~ 574 (581)
T PRK06134 524 AGQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASGYE 574 (581)
T ss_pred CCCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCCcc
Confidence 3468999999997442 2343 257789999999999987655433
No 333
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=55.08 E-value=36 Score=34.60 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=26.9
Q ss_pred CCCCC-CCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHH
Q 016397 331 LQRSP-VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 331 ~~~~~-~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~ 371 (390)
.+.+. ++||||||+-... .|.+.|..+|..|+-.+...
T Consensus 351 ~le~k~~~gLf~AGqi~Gt---~Gy~eAaa~Gl~Ag~naa~~ 389 (617)
T TIGR00136 351 TLETKLIQGLFFAGQINGT---TGYEEAAAQGLMAGINAALK 389 (617)
T ss_pred hheeCCCCCeEEccccCCc---chHHHHHHHHHHHHHHHHHH
Confidence 34443 7899999996654 46788888888887554433
No 334
>PF03275 GLF: UDP-galactopyranose mutase; InterPro: IPR015899 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity; PDB: 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 1V0J_D 3MJ4_G 3HDQ_E ....
Probab=54.99 E-value=0.36 Score=41.20 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=52.6
Q ss_pred HHHHHHHhccCCCcccccHHHHHHHH------HHHhcccCCceEEeecCCCCccchHHHHHHHHHcCcEEEcCceeeEEE
Q 016397 86 VFIAMSKALNFINPDELSMQCILIAL------NRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIE 159 (390)
Q Consensus 86 ~~~p~~~~~~~~~~~~~Sa~~~~~~l------~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~ 159 (390)
|+.++....|+.+|+++++..+..+= .+++.. .--++|++|+ ..+.+.|. ...+.+|+||+....+.
T Consensus 2 ~f~~YT~KQWg~~p~eL~~~v~~RvPvr~~~d~~YF~d---~yQgiP~~GY-T~~fe~mL---~h~~I~v~l~td~~~~~ 74 (204)
T PF03275_consen 2 FFKGYTKKQWGVDPEELDASVIKRVPVRFSYDDRYFND---KYQGIPKDGY-TKMFENML---DHPNIEVRLNTDFFDII 74 (204)
T ss_dssp HTHHHHHHHHTSSGGGSBCCCCSCS-BBSSS--BS--S---SEEEEETTHH-HHHHHHHC----STTEEEECS--GGGCH
T ss_pred ccCccCHHHcCCChHHCCHHHhcCCceeeCCCCccccC---hhhhCchhCH-HHHHHHHh---CCCceEEEcCCCHHHhh
Confidence 66788888899999999984332100 001111 1236899998 67777775 33578999987544333
Q ss_pred ECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhhh
Q 016397 160 LNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 194 (390)
Q Consensus 160 ~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~l 194 (390)
. .+....+|.||.|.|.+.+-.-
T Consensus 75 ~------------~~~~~~~~~viyTG~iDe~F~y 97 (204)
T PF03275_consen 75 E------------FGGEPYADKVIYTGPIDEYFDY 97 (204)
T ss_dssp H------------HHCCCTEEEEEE-S-HHHHTTT
T ss_pred c------------ccccccCCeEEEeCCHHHHhCc
Confidence 2 1112357999999999876543
No 335
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=54.84 E-value=16 Score=37.11 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=30.3
Q ss_pred CCCCCCCeEEecccccC----CCCC---chhHHHHHHHHHHHHHHHH
Q 016397 332 QRSPVEGFYLAGDYTKQ----KYLA---SMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~----~~~~---~~~gA~~SG~~aA~~il~~ 371 (390)
..+|++|||-||+.+.+ .||+ ++..|+.+|+.|++.+.+.
T Consensus 520 ~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 566 (574)
T PRK12842 520 DGTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGV 566 (574)
T ss_pred CCCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhh
Confidence 34689999999976532 2442 4788999999999988654
No 336
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=54.42 E-value=19 Score=35.65 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=31.2
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.++|..+|||.+||-+... ....-|+..|..||+.|+.
T Consensus 313 ~l~Ts~~~IyA~GDv~~~~--~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 313 FSRTNVPNIYAIGDVTDRV--MLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CCcCCCCCEEEeeecCCCc--ccHHHHHHHHHHHHHHHhC
Confidence 4567789999999998642 4678899999999999864
No 337
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=54.38 E-value=16 Score=37.16 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=33.0
Q ss_pred CCCCCCCeEEecccccC----CCCC---chhHHHHHHHHHHHHHHHHhhhhh
Q 016397 332 QRSPVEGFYLAGDYTKQ----KYLA---SMEGAVLSGKLCAQAIVQDYVLLA 376 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~----~~~~---~~~gA~~SG~~aA~~il~~~~~~~ 376 (390)
..+|++|||-||+-..+ .|++ ++..|+.+|+.|++.+.+.....+
T Consensus 523 ~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~~~~ 574 (584)
T PRK12835 523 DDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVAAAA 574 (584)
T ss_pred CCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhhhcC
Confidence 34689999999976532 3442 378899999999999877654333
No 338
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=54.26 E-value=14 Score=37.20 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=29.8
Q ss_pred CCCCCCCeEEecccccC----CCCC---chhHHHHHHHHHHHHHHH
Q 016397 332 QRSPVEGFYLAGDYTKQ----KYLA---SMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~----~~~~---~~~gA~~SG~~aA~~il~ 370 (390)
...||+|||-||+.+.+ .|++ ++..|+.+|+.|++++.+
T Consensus 510 ~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 510 DGSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CCCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 34689999999988642 2443 467899999999998754
No 339
>PLN02507 glutathione reductase
Probab=54.04 E-value=18 Score=35.88 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.++|..+|||.+||-+... .....|...|+.||+.|+.
T Consensus 325 ~~~Ts~p~IyAiGDv~~~~--~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 325 YSRTNIPSIWAIGDVTNRI--NLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CCcCCCCCEEEeeEcCCCC--ccHHHHHHHHHHHHHHHcC
Confidence 4567889999999998642 4678899999999998864
No 340
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=53.97 E-value=15 Score=34.88 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=29.4
Q ss_pred CCCCCeEEecccccCC-CCC--chhHHHHHHHHHHHHHHHHh
Q 016397 334 SPVEGFYLAGDYTKQK-YLA--SMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~-~~~--~~~gA~~SG~~aA~~il~~~ 372 (390)
..+|||||||+-++.. |.+ .+.-|..||+.|++.+.+.+
T Consensus 366 k~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 366 KKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred hcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 4578999999877653 323 36779999999998877653
No 341
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=53.77 E-value=16 Score=36.82 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=30.4
Q ss_pred CCCCCCCeEEecccccC----CCCC---chhHHHHHHHHHHHHHHHH
Q 016397 332 QRSPVEGFYLAGDYTKQ----KYLA---SMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~----~~~~---~~~gA~~SG~~aA~~il~~ 371 (390)
...||+|||.||+-+.+ .|++ ++..|+.+|+.|++.+.+.
T Consensus 503 ~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~ 549 (557)
T PRK12844 503 DGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGA 549 (557)
T ss_pred CCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhc
Confidence 34689999999986532 3442 5788999999999988654
No 342
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=53.70 E-value=18 Score=35.32 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=31.8
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
..+|.++|||-+||.+.+. ...+-|...|+.||+.++.
T Consensus 297 ~~~Tnvp~IyA~GDV~~~~--~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 297 QMTTNVPGIYAIGDVIGGP--MLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred ccccCCCCEEEeeccCCCc--ccHhHHHHHHHHHHHHHhC
Confidence 3455689999999998774 3678899999999999986
No 343
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=53.45 E-value=15 Score=37.16 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=29.4
Q ss_pred CCCCCCCeEEecccccC----CCCC---chhHHHHHHHHHHHHHH
Q 016397 332 QRSPVEGFYLAGDYTKQ----KYLA---SMEGAVLSGKLCAQAIV 369 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~----~~~~---~~~gA~~SG~~aA~~il 369 (390)
..+|++|||-||+.+.+ .|++ ++..|+.+|+.|++.+.
T Consensus 518 dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa 562 (564)
T PRK12845 518 DGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAA 562 (564)
T ss_pred CCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHh
Confidence 34589999999987542 3543 57889999999999875
No 344
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=53.05 E-value=20 Score=36.86 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=29.4
Q ss_pred CCCCCeEEecccccCC-CC------CchhHHHHHHHHHHHHHHHH
Q 016397 334 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~-~~------~~~~gA~~SG~~aA~~il~~ 371 (390)
++++|||-||+-..++ |. .++-.|+..|++|++.+...
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~ 465 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEI 465 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 6799999999976422 22 26788999999999987654
No 345
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=51.62 E-value=20 Score=36.35 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=29.9
Q ss_pred CCCCCCeEEecccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 016397 333 RSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~~-~~------~~~~gA~~SG~~aA~~il~~~ 372 (390)
.++++|||-||+-+.++ |. .++-.|+..|++|++.+.+..
T Consensus 372 ~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 418 (583)
T PRK08205 372 TTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYA 418 (583)
T ss_pred CCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 36799999999976522 21 157889999999999876553
No 346
>PRK14727 putative mercuric reductase; Provisional
Probab=51.60 E-value=18 Score=35.70 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=30.8
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.++|..+|||.+||-+.. |..+.-|+..|+.||..|+.
T Consensus 308 ~~~Ts~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 308 AMETSAPDIYAAGDCSDL--PQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred CeecCCCCEEEeeecCCc--chhhhHHHHHHHHHHHHHcC
Confidence 456778999999998754 25678899999999999864
No 347
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=51.57 E-value=20 Score=35.15 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=31.0
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
..++..+|||.+||-+... .....|+..|+.||..|..
T Consensus 293 ~~~ts~~~IyA~GD~~~~~--~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 293 HTQTSVPGIYAAGDVNGKP--PLLHEAADEGRIAAENAAG 330 (460)
T ss_pred CcccCCCCEEEEEecCCCc--cchhHHHHHHHHHHHHhcC
Confidence 4567789999999998642 4668899999999999875
No 348
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.66 E-value=25 Score=33.50 Aligned_cols=59 Identities=22% Similarity=0.207 Sum_probs=39.8
Q ss_pred CCccchHHHHHHHH-------HcCcEEEcCceeeEEEECCCCCEEEEEEcC---C--eEEEcCEEEEecChh
Q 016397 130 PPERLCLPIVEHIQ-------SLGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPVD 189 (390)
Q Consensus 130 ~~~~l~~~l~~~l~-------~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~---g--~~~~ad~VI~a~p~~ 189 (390)
.+...+++|-+.|- +..++++.++.|.+++..++|++ .+.+.. | ++++.|+||+||.-.
T Consensus 269 I~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~-~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 269 ISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY-RLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE-EEEEeeccCCCceEEEeeEEEEecccc
Confidence 33455555544332 23467889999999999777754 354432 2 478899999999875
No 349
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=49.81 E-value=22 Score=34.86 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=30.4
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.+++..+|||.+||-+.. +.....|+..|..||+.|+.
T Consensus 297 ~~~t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 297 NYQTAVPHIYAVGDVIGF--PSLASASMDQGRIAAQHAVG 334 (461)
T ss_pred CcccCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHHcC
Confidence 356678999999998753 35678899999999999873
No 350
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.81 E-value=27 Score=35.40 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=30.6
Q ss_pred CCCC-CCCeEEecccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 016397 332 QRSP-VEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 332 ~~~~-~~~l~~aGd~~~~~-~~------~~~~gA~~SG~~aA~~il~~~ 372 (390)
.+++ ++|||-||+-..++ |. .++-+|+..|++|++.+....
T Consensus 355 ~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 403 (566)
T PRK06452 355 GRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFL 403 (566)
T ss_pred CCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3465 99999999976532 21 257889999999999887654
No 351
>PRK07121 hypothetical protein; Validated
Probab=49.74 E-value=20 Score=35.57 Aligned_cols=39 Identities=21% Similarity=0.446 Sum_probs=29.6
Q ss_pred CCCCCCeEEecccccC----CCC--CchhHHHHHHHHHHHHHHHH
Q 016397 333 RSPVEGFYLAGDYTKQ----KYL--ASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~----~~~--~~~~gA~~SG~~aA~~il~~ 371 (390)
.+|++|||.||+-..+ .|+ .++-.|+.+|+.|++.+.+.
T Consensus 446 g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 446 GAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 4589999999986432 232 36788999999999988654
No 352
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=49.65 E-value=21 Score=34.68 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=28.9
Q ss_pred CCCCCCeEEecccccC-----CCC--CchhHHHHHHHHHHHHHHHH
Q 016397 333 RSPVEGFYLAGDYTKQ-----KYL--ASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~-----~~~--~~~~gA~~SG~~aA~~il~~ 371 (390)
..|++|||-||+.+.+ .|. .++..|+.+|+.|++.+.+.
T Consensus 384 g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 384 AVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 4589999999986432 232 35788999999999987654
No 353
>PRK06370 mercuric reductase; Validated
Probab=49.39 E-value=25 Score=34.48 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.+++..+|||.+||-+... .....|...|+.||+.|+.
T Consensus 296 ~l~t~~~~IyAiGD~~~~~--~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 296 QLRTTNPGIYAAGDCNGRG--AFTHTAYNDARIVAANLLD 333 (463)
T ss_pred CCcCCCCCEEEeeecCCCc--ccHHHHHHHHHHHHHHHhC
Confidence 4567789999999987642 4667899999999999874
No 354
>PRK14694 putative mercuric reductase; Provisional
Probab=49.26 E-value=22 Score=34.92 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=30.9
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.+++..+|||.+||-+... ..+.-|+..|..||..|+.
T Consensus 297 ~~~Ts~~~IyA~GD~~~~~--~~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 297 HLQTTVSGIYAAGDCTDQP--QFVYVAAAGGSRAAINMTG 334 (468)
T ss_pred CcccCCCCEEEEeecCCCc--ccHHHHHHHHHHHHHHhcC
Confidence 3567789999999998642 5778899999999998863
No 355
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.22 E-value=24 Score=35.43 Aligned_cols=41 Identities=7% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCCCCCCeEEecccccCCCC------CchhHHHHHHHHHHHHHHHHh
Q 016397 332 QRSPVEGFYLAGDYTKQKYL------ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~------~~~~gA~~SG~~aA~~il~~~ 372 (390)
.+++++|||-||+-+.+-|. .++-.|+.+|+.|++.+.+..
T Consensus 357 ~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 357 CETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred CcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 34789999999997543221 256789999999999987654
No 356
>PRK13748 putative mercuric reductase; Provisional
Probab=49.11 E-value=21 Score=35.96 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=30.8
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.++|..+|||.+||-+... ..+..|+..|+.||..|..
T Consensus 390 ~~~Ts~~~IyA~GD~~~~~--~~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 390 GMRTSVPHIYAAGDCTDQP--QFVYVAAAAGTRAAINMTG 427 (561)
T ss_pred CcccCCCCEEEeeecCCCc--cchhHHHHHHHHHHHHHcC
Confidence 3567789999999998642 5678899999999998863
No 357
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=49.00 E-value=24 Score=34.70 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=30.9
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.+++..+|||.+||-+.. +.....|+..|+.||+.|+.
T Consensus 298 ~~~Ts~p~IyAiGD~~~~--~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 298 YMRTNVPHIYAIGDVTAK--LQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred CcccCCCCEEEEeecCCC--cccHhHHHHHHHHHHHHHcC
Confidence 356778999999999764 24678899999999998864
No 358
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=48.70 E-value=22 Score=34.95 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=30.6
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.+++..+|||.+||-+.. |.....|+..|+.||+.|..
T Consensus 299 ~~~t~~p~VyAiGDv~~~--~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 299 QCRTNVPHIFAIGDIVGQ--PMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred CcccCCCCEEEehhhcCC--cccHHHHHHHHHHHHHHHcC
Confidence 356778999999998753 24678899999999998864
No 359
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=48.15 E-value=23 Score=35.83 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=30.1
Q ss_pred CCCCCeEEecccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 016397 334 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~-~~------~~~~gA~~SG~~aA~~il~~~ 372 (390)
++++|||-||+-..++ |. .++-.|+.+|++|++.+....
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~ 402 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYA 402 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 7899999999975422 21 257889999999999887654
No 360
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=47.85 E-value=23 Score=36.32 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=29.6
Q ss_pred CCCCCCeEEecccccCC-CC------CchhHHHHHHHHHHHHHHHH
Q 016397 333 RSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~~-~~------~~~~gA~~SG~~aA~~il~~ 371 (390)
.++++|||-||+-..++ |. .++-.|+..|++|++.+.+.
T Consensus 399 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~ 444 (617)
T PTZ00139 399 DKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEI 444 (617)
T ss_pred CCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 35799999999976422 21 26788999999999988664
No 361
>PRK09077 L-aspartate oxidase; Provisional
Probab=47.74 E-value=24 Score=35.39 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=30.9
Q ss_pred CCCCCCCeEEecccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 016397 332 QRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~-~~------~~~~gA~~SG~~aA~~il~~~ 372 (390)
.+++++|||-||+-..++ |. .++-.|+..|++|++.+....
T Consensus 362 ~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 362 GRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred CccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 457899999999976322 21 367889999999999887653
No 362
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=47.31 E-value=20 Score=36.08 Aligned_cols=39 Identities=26% Similarity=0.565 Sum_probs=28.9
Q ss_pred CCCCCCCeEEeccccc------CCC----CCchhHHHHHHHHHHHHHHH
Q 016397 332 QRSPVEGFYLAGDYTK------QKY----LASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~------~~~----~~~~~gA~~SG~~aA~~il~ 370 (390)
..+|++|||-||+-.. .++ ..++..|+.+|+.|++.+.+
T Consensus 500 dg~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 500 DGTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CCCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 3468999999998863 122 13578899999999998753
No 363
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=47.14 E-value=51 Score=32.02 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=21.4
Q ss_pred CCCCeEEecccccCCCCCchhHHHHHHHHHHHHHH
Q 016397 335 PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 369 (390)
Q Consensus 335 ~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il 369 (390)
..+||||||.-+... |-+.|..+|..|+-...
T Consensus 328 ~~~~lf~AGQi~G~~---GY~Eaaa~Gl~agina~ 359 (433)
T TIGR00137 328 DRQTLFFAGQLTGVE---GYVASTAGGWLAGINAA 359 (433)
T ss_pred CCCCEEECcccccch---HHHHHHHHHHHHHHHHH
Confidence 368999999888763 44555556766654443
No 364
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=46.26 E-value=27 Score=35.45 Aligned_cols=41 Identities=15% Similarity=0.345 Sum_probs=30.4
Q ss_pred CCCCCCCeEEecccccCC-C----C--CchhHHHHHHHHHHHHHHHHh
Q 016397 332 QRSPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~-~----~--~~~~gA~~SG~~aA~~il~~~ 372 (390)
.+++++|||-||+-...+ | . .++-.|+..|++|++.+....
T Consensus 367 ~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 414 (582)
T PRK09231 367 CETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERA 414 (582)
T ss_pred CccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhh
Confidence 457899999999975422 2 1 257779999999999887654
No 365
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=46.08 E-value=29 Score=35.25 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=30.0
Q ss_pred CCCCCCeEEecccccCC-C----C--CchhHHHHHHHHHHHHHHHHh
Q 016397 333 RSPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~~-~----~--~~~~gA~~SG~~aA~~il~~~ 372 (390)
.++++|||-||+-+.++ | . .++-.|+.+|++|++.+....
T Consensus 367 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 413 (575)
T PRK05945 367 DGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYV 413 (575)
T ss_pred CCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 45799999999976522 2 1 257889999999999886543
No 366
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=45.84 E-value=29 Score=35.34 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=29.8
Q ss_pred CCCCCCCeEEecccccCCCC------CchhHHHHHHHHHHHHHHHH
Q 016397 332 QRSPVEGFYLAGDYTKQKYL------ASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~------~~~~gA~~SG~~aA~~il~~ 371 (390)
..++++|||-||+-..+.|. .++-.|+..|++|++.+.+.
T Consensus 364 ~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~ 409 (589)
T PRK08641 364 QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEY 409 (589)
T ss_pred CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 46789999999997533221 25778999999999887654
No 367
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=45.84 E-value=28 Score=34.10 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=30.9
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.++|..+|||.+||-+... ....-|+..|+.||..|+.
T Consensus 291 ~~~Ts~~~VyAiGD~~~~~--~~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 291 TLRTSNPGIYAAGDVTGGL--QLEYVAAKEGVVAAENALG 328 (463)
T ss_pred CccCCCCCEEEeeecCCCc--ccHhHHHHHHHHHHHHhcC
Confidence 4567789999999988652 4568899999999999864
No 368
>PLN02852 ferredoxin-NADP+ reductase
Probab=45.63 E-value=23 Score=35.06 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=33.1
Q ss_pred CCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 016397 333 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 374 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~~ 374 (390)
.|+++|+|.|||-..+.. +-+-.++..|..+|+.|+.++..
T Consensus 383 ~T~ipGvyAaGDi~~Gp~-gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 383 ADTEPGLYVVGWLKRGPT-GIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred ccCCCCEEEeeeEecCCC-CeeeecHhhHHHHHHHHHHHHHc
Confidence 467899999999886432 36788899999999999998754
No 369
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=45.56 E-value=30 Score=34.76 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=34.9
Q ss_pred HHHcCcEEEcCceeeEEEECCCCCEEEEEEcC--C---e-EEEcCEEEEecChhhHhhh
Q 016397 142 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--G---N-VIDGDAYVFATPVDILKLQ 194 (390)
Q Consensus 142 l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~--g---~-~~~ad~VI~a~p~~~~~~l 194 (390)
++..+.+|++++.|++|..+ ++++++|++.. + + .+.++.||++...-...+|
T Consensus 213 ~~~~nl~v~t~a~v~ri~~~-~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~L 270 (542)
T COG2303 213 LKRPNLTLLTGARVRRILLE-GDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKL 270 (542)
T ss_pred hcCCceEEecCCEEEEEEEE-CCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHH
Confidence 33445899999999999996 44565676642 3 2 2457888887765444444
No 370
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=45.50 E-value=28 Score=34.27 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=30.4
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.+++..+|||.+||.+... .....|+..|..||+.|..
T Consensus 309 ~~~Ts~~~VyA~GD~~~~~--~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 309 HCRTNVPNVYAIGDVVRGP--MLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CCccCCCCEEEEEeccCCc--chHHHHHHHHHHHHHHHcC
Confidence 3567789999999987642 4678899999999998864
No 371
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=45.45 E-value=29 Score=34.13 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=31.0
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
..+|..+|||.+||-+.. + .....|...|..||..++.
T Consensus 299 ~~~Ts~~~IyA~GD~~~~-~-~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 299 VSRTSVPGIYAAGDCTGV-L-PLASVAAMQGRIAMYHALG 336 (466)
T ss_pred CcccCCCCEEEEeeccCC-c-cchhHHHHHHHHHHHHHcC
Confidence 456778999999999864 2 4678899999999998874
No 372
>PRK08275 putative oxidoreductase; Provisional
Probab=45.29 E-value=26 Score=35.31 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=31.5
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~ 372 (390)
..+|.++|||-||+-...++ .++..|+..|+.|++.+....
T Consensus 364 ~~~t~i~gl~a~Ge~~~~~~-~~~~~~~~~G~~a~~~~~~~~ 404 (554)
T PRK08275 364 KAETTVPGLYAAGDMASVPH-NYMLGAFTYGWFAGENAAEYV 404 (554)
T ss_pred CCccCCCCEEECcccCCchh-HHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999754332 367789999999998876543
No 373
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.83 E-value=30 Score=35.19 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=29.2
Q ss_pred CCCCCeEEecccccCC-C----C--CchhHHHHHHHHHHHHHHHHh
Q 016397 334 SPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~-~----~--~~~~gA~~SG~~aA~~il~~~ 372 (390)
++++|||-||+-+.++ | . .++-.|+..|++|++.+....
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 423 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESL 423 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999976422 2 1 256889999999999876543
No 374
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=44.56 E-value=29 Score=33.96 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=30.9
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.+++..++||.+||-+.. +.....|+..|+.+|+.|..
T Consensus 296 ~~~t~~~~VyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 296 QLRTNVPNIYAIGDIVGG--PMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CCccCCCCEEEeeecCCC--cchHHHHHHHHHHHHHHHcC
Confidence 345778999999998753 25678899999999999874
No 375
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=44.54 E-value=32 Score=34.03 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=30.7
Q ss_pred CCCCCCCCeEEecccccCC-C----C--CchhHHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~-~----~--~~~~gA~~SG~~aA~~il~~ 371 (390)
..+++++|||-||+...++ | . .++-.|+..|++|++.+...
T Consensus 341 ~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 341 HGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred CCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 3457899999999975322 2 1 25778999999999988754
No 376
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.24 E-value=33 Score=34.75 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=29.1
Q ss_pred CCCCCeEEecccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 016397 334 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~-~~------~~~~gA~~SG~~aA~~il~~~ 372 (390)
++++|||-||+-..++ |. .++-.|+..|++|++.+....
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 405 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKAL 405 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 5799999999975422 21 256889999999998876543
No 377
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.97 E-value=31 Score=32.88 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=28.4
Q ss_pred cEEEcCceeeEEEECCCCCEEE--EEEcCCeEEEcCEEEEecC
Q 016397 147 GEVRLNSRVQKIELNDDGTVKN--FLLTNGNVIDGDAYVFATP 187 (390)
Q Consensus 147 ~~I~l~~~V~~I~~~~~g~v~~--V~~~~g~~~~ad~VI~a~p 187 (390)
-.+++|++|+.|...+...+.. |++.++++++|..+|+++.
T Consensus 112 ~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G 154 (436)
T COG3486 112 PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVG 154 (436)
T ss_pred CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccC
Confidence 5799999999774322111223 5667788899999999764
No 378
>PLN02546 glutathione reductase
Probab=43.88 E-value=30 Score=34.94 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=31.0
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.++|..+|||.+||-+... ....-|+..|..+|+.|+.
T Consensus 375 ~l~Ts~p~IYAaGDv~~~~--~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 375 YSRTSVPSIWAVGDVTDRI--NLTPVALMEGGALAKTLFG 412 (558)
T ss_pred CceeCCCCEEEeeccCCCc--ccHHHHHHHHHHHHHHHcC
Confidence 4567789999999998642 4678899999999998864
No 379
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=43.79 E-value=20 Score=35.78 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=29.1
Q ss_pred CCCCCCeEEeccccc----CCCCC---chhHHHHHHHHHHHHHHH
Q 016397 333 RSPVEGFYLAGDYTK----QKYLA---SMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~----~~~~~---~~~gA~~SG~~aA~~il~ 370 (390)
.+||+|||-||+-+. ..|++ ++..|+.+|+.|++.+..
T Consensus 466 g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 466 GRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred CCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 458999999999753 23542 378899999999998743
No 380
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=43.26 E-value=27 Score=35.41 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=29.0
Q ss_pred CCCCCeEEecccccCC-C----C--CchhHHHHHHHHHHHHHHHHh
Q 016397 334 SPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~-~----~--~~~~gA~~SG~~aA~~il~~~ 372 (390)
++++|||-||+-+.++ | . .++-.|+.+|++|++.+.+..
T Consensus 369 ~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~ 414 (577)
T PRK06069 369 EWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA 414 (577)
T ss_pred CEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 4599999999976522 2 1 247788999999999876543
No 381
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=43.16 E-value=19 Score=33.30 Aligned_cols=72 Identities=22% Similarity=0.324 Sum_probs=37.7
Q ss_pred HHHHHhCCCCccccccCceEEEEEEEEeCCceeccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchhHH---HHHHHH
Q 016397 287 KELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGA---VLSGKL 363 (390)
Q Consensus 287 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~~gA---~~SG~~ 363 (390)
+.+-++.|++. ..+++.+-+. .+.+|...|......-.. ..-+||+|||.-|... +.++.| +..|..
T Consensus 293 krVf~mIPgLe-----NAefvRyGvm--HRNtfinSP~lL~~tl~l-k~~p~l~fAGQitG~E--GYveSaA~Gllag~n 362 (439)
T COG1206 293 KRVFRMIPGLE-----NAEFVRYGVM--HRNTFINSPKLLDPTLQL-KKRPNLFFAGQITGVE--GYVESAASGLLAGIN 362 (439)
T ss_pred hhhhhhcCCcc-----hhhhhhccce--ecccccCChhhhhHHhhc-ccCCCcEEeeeeecch--hhhHHhhhhHHHhhH
Confidence 44567788875 3455544443 234455444321110111 1237999999888765 455543 344555
Q ss_pred HHHHH
Q 016397 364 CAQAI 368 (390)
Q Consensus 364 aA~~i 368 (390)
||+..
T Consensus 363 aa~~~ 367 (439)
T COG1206 363 AARLA 367 (439)
T ss_pred HHHHh
Confidence 55544
No 382
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=43.04 E-value=29 Score=35.58 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=29.4
Q ss_pred CCCCCCeEEecccccCCCC------CchhHHHHHHHHHHHHHHHH
Q 016397 333 RSPVEGFYLAGDYTKQKYL------ASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~~~~------~~~~gA~~SG~~aA~~il~~ 371 (390)
.++++|||.||+-..+-|. .++-.|+..|++|++.+...
T Consensus 402 ~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~ 446 (626)
T PRK07803 402 AATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADY 446 (626)
T ss_pred eeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHH
Confidence 4689999999986543221 26788999999999887654
No 383
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=42.93 E-value=38 Score=33.54 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=30.4
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
..+|..++||.+||-+... +....-|+..|+.+|+.|+.
T Consensus 305 ~~~Ts~p~IyA~GDv~~~~-~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 305 EEQTNVPYIYAVGDILEDK-QELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CcccCCCCEEEEEEecCCC-ccchHHHHHHHHHHHHHHhc
Confidence 3567789999999987532 23567799999999999874
No 384
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=42.78 E-value=33 Score=34.86 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=31.2
Q ss_pred CCCCCCCCeEEecccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 016397 331 LQRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~-~~------~~~~gA~~SG~~aA~~il~~~ 372 (390)
..+|+++|||-||+-...+ |. .++-.|+..|++|++.+....
T Consensus 365 ~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~ 413 (580)
T TIGR01176 365 NCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERA 413 (580)
T ss_pred CcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhh
Confidence 3457899999999875322 31 267789999999999887653
No 385
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=42.76 E-value=27 Score=34.78 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=29.7
Q ss_pred CCCCCCeEEecccccCCC----C--CchhHHHHHHHHHHHHHHHH
Q 016397 333 RSPVEGFYLAGDYTKQKY----L--ASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~~~----~--~~~~gA~~SG~~aA~~il~~ 371 (390)
.+|++|||-||+-+.+-| . .++-.|+.+|+.|++.+.+.
T Consensus 458 g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~ 502 (506)
T PRK06481 458 GSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEF 502 (506)
T ss_pred CCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 468999999999654322 2 25778999999999988664
No 386
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=42.73 E-value=31 Score=33.93 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=30.9
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
..+|..+|||.+||-+.. |....-|...|+.||+.|+.
T Consensus 300 ~~~Ts~~~IyA~GD~~~~--~~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 300 HHRTSVPGVWVIGDVTSG--PMLAHKAEDEAVACIERIAG 337 (466)
T ss_pred CeecCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 356778999999999864 24678899999999998864
No 387
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=42.66 E-value=33 Score=33.55 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=30.1
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
+++..++||.+||.... +.....|+..|+.+|+.|..
T Consensus 295 l~t~~~~IyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 295 MRTNVPGIYAIGDVIGG--PMLAHVASHEGIVAAENIAG 331 (461)
T ss_pred cccCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 45667999999998754 24678899999999999874
No 388
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=42.37 E-value=65 Score=30.03 Aligned_cols=54 Identities=20% Similarity=0.323 Sum_probs=38.4
Q ss_pred cchHHHHHHHHH---cC-cEEEcCceeeEEEECCCCCEEEEEEc--------C---------Ce-EEEcCEEEEecC
Q 016397 133 RLCLPIVEHIQS---LG-GEVRLNSRVQKIELNDDGTVKNFLLT--------N---------GN-VIDGDAYVFATP 187 (390)
Q Consensus 133 ~l~~~l~~~l~~---~G-~~I~l~~~V~~I~~~~~g~v~~V~~~--------~---------g~-~~~ad~VI~a~p 187 (390)
.+.+++.+.+++ .| +++++.++|.++... +|++++|.-. . |+ +++|.+||+|..
T Consensus 150 gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SG 225 (552)
T COG3573 150 GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASG 225 (552)
T ss_pred chhhHHHHHHHHHHhCCceEEEeeeeccceEee-CCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecC
Confidence 577888777765 44 789999999999985 5667766421 1 21 467889999764
No 389
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=42.29 E-value=33 Score=32.84 Aligned_cols=40 Identities=33% Similarity=0.372 Sum_probs=32.9
Q ss_pred cCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 145 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 145 ~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
-|+-+..+..|.+|... ++. |.+.||.+|.+|.+.+|+..
T Consensus 270 GGvAvl~G~kvvkid~~-d~~---V~LnDG~~I~YdkcLIATG~ 309 (659)
T KOG1346|consen 270 GGVAVLRGRKVVKIDEE-DKK---VILNDGTTIGYDKCLIATGV 309 (659)
T ss_pred CceEEEeccceEEeecc-cCe---EEecCCcEeehhheeeecCc
Confidence 35779999999999974 553 78899999999999888764
No 390
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=42.25 E-value=34 Score=33.48 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=30.1
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.++|..+|||.+||-+.. + ....-|...|+.+|+.|..
T Consensus 290 ~~~Ts~~~IyA~GD~~~~-~-~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 290 YGRTSARGVWALGDVSSP-Y-QLKHVANAEARVVKHNLLH 327 (452)
T ss_pred CcccCCCCEEEeecccCc-c-cChhHHHHHHHHHHHHhcC
Confidence 456778999999998764 2 3567789999999999864
No 391
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=42.24 E-value=32 Score=33.03 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC------C---------eEEEcCEEEEecC
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN------G---------NVIDGDAYVFATP 187 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~------g---------~~~~ad~VI~a~p 187 (390)
.++.-|.++.++.|++|.-+..+.+|..++||.|.+|.+.| | -.+.|..-|+|-.
T Consensus 184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEG 253 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEG 253 (621)
T ss_pred HHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecc
Confidence 45566677777899999999999999999999998888754 2 2466777777643
No 392
>PRK08071 L-aspartate oxidase; Provisional
Probab=42.06 E-value=37 Score=33.83 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=29.7
Q ss_pred CCCCCCCeEEecccccCC-C----C--CchhHHHHHHHHHHHHHHHH
Q 016397 332 QRSPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~-~----~--~~~~gA~~SG~~aA~~il~~ 371 (390)
.+++++|||-||+-..++ | . .++-.|+..|++|++.+...
T Consensus 341 ~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 341 GETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred CcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 457899999999976422 2 1 25778899999999988654
No 393
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=42.01 E-value=31 Score=35.00 Aligned_cols=40 Identities=20% Similarity=0.425 Sum_probs=29.6
Q ss_pred CCCCCCCeEEecccccC----CCCC---chhHHHHHHHHHHHHHHHH
Q 016397 332 QRSPVEGFYLAGDYTKQ----KYLA---SMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~----~~~~---~~~gA~~SG~~aA~~il~~ 371 (390)
..++++|||-||+.+.+ .|++ ++..|+.+|+.|++.+.+.
T Consensus 525 dg~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 571 (578)
T PRK12843 525 DGQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKR 571 (578)
T ss_pred CCCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHh
Confidence 34589999999976532 3432 4667999999999988655
No 394
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=41.40 E-value=85 Score=34.03 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=32.4
Q ss_pred HHcCcEEEcCceeeEEEECCC-CCEEEEEEc-----------------CC--eEEEcCEEEEecCh
Q 016397 143 QSLGGEVRLNSRVQKIELNDD-GTVKNFLLT-----------------NG--NVIDGDAYVFATPV 188 (390)
Q Consensus 143 ~~~G~~I~l~~~V~~I~~~~~-g~v~~V~~~-----------------~g--~~~~ad~VI~a~p~ 188 (390)
.+.|++++.++.+++|..+++ +++++|++. +| .++.||.||+|+..
T Consensus 495 ~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~ 560 (944)
T PRK12779 495 LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGN 560 (944)
T ss_pred HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCc
Confidence 357999999999999986533 345444331 23 35899999999864
No 395
>PRK07846 mycothione reductase; Reviewed
Probab=41.01 E-value=39 Score=33.07 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=30.0
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.++|..+|||.+||-+... .....|...|+.+|+.|+.
T Consensus 287 ~~~Ts~p~IyA~GD~~~~~--~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 287 YQRTSAEGVFALGDVSSPY--QLKHVANHEARVVQHNLLH 324 (451)
T ss_pred CcccCCCCEEEEeecCCCc--cChhHHHHHHHHHHHHHcC
Confidence 4567789999999988652 3567788999999998864
No 396
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=40.88 E-value=74 Score=31.51 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=29.3
Q ss_pred cCcE-EEcCceeeEEEECCCCCEEEEEE--------cCC-----------eEEEcCEEEEecCh
Q 016397 145 LGGE-VRLNSRVQKIELNDDGTVKNFLL--------TNG-----------NVIDGDAYVFATPV 188 (390)
Q Consensus 145 ~G~~-I~l~~~V~~I~~~~~g~v~~V~~--------~~g-----------~~~~ad~VI~a~p~ 188 (390)
.|++ +++++.+.+|..+++|++++|++ .+| .++.+|.||+|+..
T Consensus 349 ~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~ 412 (485)
T TIGR01317 349 YGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF 412 (485)
T ss_pred cCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence 4543 46788888887654466666653 123 26899999999864
No 397
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.79 E-value=62 Score=31.63 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHcC--cEEEcCceeeEEEECCCCCEEEEEEcCC----eEEEcCEEEEecChhh
Q 016397 133 RLCLPIVEHIQSLG--GEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPVDI 190 (390)
Q Consensus 133 ~l~~~l~~~l~~~G--~~I~l~~~V~~I~~~~~g~v~~V~~~~g----~~~~ad~VI~a~p~~~ 190 (390)
.+.+-|....+.-+ ..|++++.|.++....+|++ .|.+.++ +...+|.||+++..+.
T Consensus 91 e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 91 EVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW-RVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred HHHHHHHHHHHhcChhhheEecccEEEEeeccCCce-eEEEecCCcceeEEEeeEEEEcccCcC
Confidence 34444444444333 46999999999998543666 4666543 3567899999998774
No 398
>PRK07512 L-aspartate oxidase; Provisional
Probab=39.67 E-value=44 Score=33.34 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=30.0
Q ss_pred CCCCCCCeEEecccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 016397 332 QRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~-~~------~~~~gA~~SG~~aA~~il~~~ 372 (390)
.+++++|||-||+-..++ |. .++-.|+..|++|++.+....
T Consensus 350 ~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~ 397 (513)
T PRK07512 350 GRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTP 397 (513)
T ss_pred CccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999975322 21 146778899999999887653
No 399
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=39.13 E-value=35 Score=34.72 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=29.1
Q ss_pred CCCCCeEEecccccCC-CC------CchhHHHHHHHHHHHHHHHH
Q 016397 334 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~-~~------~~~~gA~~SG~~aA~~il~~ 371 (390)
++++|||-||+-..++ |. .++-.|+..|++|++.+...
T Consensus 381 ~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~ 425 (591)
T PRK07057 381 EPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDH 425 (591)
T ss_pred CeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4799999999976422 21 25788999999999988654
No 400
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=39.09 E-value=77 Score=32.34 Aligned_cols=66 Identities=17% Similarity=0.393 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCCccccccCceEEEEEEEEeCCce-eccC-CCCCCCCCCCCC-CCCCeEEecccccCCCCCchhHHHHHH
Q 016397 285 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV-YKTI-PNCEPCRPLQRS-PVEGFYLAGDYTKQKYLASMEGAVLSG 361 (390)
Q Consensus 285 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~a~-~~~~-~g~~~~~~~~~~-~~~~l~~aGd~~~~~~~~~~~gA~~SG 361 (390)
++.++-+..|++. ...+.|.-++. |.+. |.. ..+.+.+ .++||||||.-..+ .|-|.|..+|
T Consensus 317 ~Q~~~~r~ipGle----------~a~i~r~gy~ieyd~i~p~~--L~~~Le~k~~~~lf~AGQinGt---~GYeEaaaqG 381 (618)
T PRK05192 317 VQLEMLRSIPGLE----------NAEILRPGYAIEYDYVDPRQ--LKPTLETKKIKGLFFAGQINGT---TGYEEAAAQG 381 (618)
T ss_pred HHHHHHhcCcCcc----------ceeEeecccceeecccChhh--cchhheecCCCCeEECcccCCC---hHHHHHHHHH
Confidence 4555666778864 22234333322 2221 222 2333443 36899999987766 3445555566
Q ss_pred HHHH
Q 016397 362 KLCA 365 (390)
Q Consensus 362 ~~aA 365 (390)
..|.
T Consensus 382 l~Ag 385 (618)
T PRK05192 382 LIAG 385 (618)
T ss_pred HHHH
Confidence 5554
No 401
>PRK06175 L-aspartate oxidase; Provisional
Probab=38.93 E-value=39 Score=32.86 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=30.6
Q ss_pred CCCCCCCeEEecccccCC-C----C--CchhHHHHHHHHHHHHHHHHh
Q 016397 332 QRSPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~-~----~--~~~~gA~~SG~~aA~~il~~~ 372 (390)
.+++++|||-||+-+.++ | . .++-.++..|++|++.+....
T Consensus 340 ~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 340 SKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred ccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 347899999999976422 2 2 257788999999999886543
No 402
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=38.58 E-value=94 Score=33.83 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=33.2
Q ss_pred hHHHHHHHHHcCcEEEcCceeeEEEECCCCCEE----------------EEEEcCCeEEEcCEEEEecChh
Q 016397 135 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVK----------------NFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 135 ~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~----------------~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.+.+.+.+ +.|++++.++.+++|.. +|+++ .+.+.++.++.+|.||+|+...
T Consensus 711 ~eEle~Al-eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~ 778 (1019)
T PRK09853 711 REEYEEAL-EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ 778 (1019)
T ss_pred HHHHHHHH-HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc
Confidence 33444433 46899999999988863 23321 1222234578999999998764
No 403
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=38.45 E-value=40 Score=32.71 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=30.0
Q ss_pred CCCCCCeEEecccccCCCC----CchhHHHHHHHHHHHHHHHHh
Q 016397 333 RSPVEGFYLAGDYTKQKYL----ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~~~~----~~~~gA~~SG~~aA~~il~~~ 372 (390)
.+.++|||.+|+-+.+.-+ .+-.-|+.||..||++|.+..
T Consensus 377 ~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 377 GPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred CeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHhh
Confidence 3447999999998876433 233458999999999998654
No 404
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=38.43 E-value=39 Score=33.11 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=29.5
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
+++..+|+|.+||-+.. +....-|+..|+.||..+..
T Consensus 293 ~~ts~~~VyA~GD~~~~--~~la~~A~~~g~~aa~~~~g 329 (458)
T PRK06912 293 MQTNVPHIYACGDVIGG--IQLAHVAFHEGTTAALHASG 329 (458)
T ss_pred eecCCCCEEEEeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 45678999999998753 24677899999999998753
No 405
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=38.01 E-value=1.9e+02 Score=27.78 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=28.8
Q ss_pred ccchHHHHHHHHHc-CcEEEcCceeeEEEECCCCCEEEEEEcC--CeEEEc
Q 016397 132 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN--GNVIDG 179 (390)
Q Consensus 132 ~~l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~V~~~~--g~~~~a 179 (390)
+++++.|.+...+. .+++.- -.|.++.. ++|.+.||++++ |+++++
T Consensus 147 GRFvq~lR~ka~slpNV~~ee-GtV~sLle-e~gvvkGV~yk~k~gee~~~ 195 (509)
T KOG1298|consen 147 GRFVQRLRKKAASLPNVRLEE-GTVKSLLE-EEGVVKGVTYKNKEGEEVEA 195 (509)
T ss_pred cHHHHHHHHHHhcCCCeEEee-eeHHHHHh-ccCeEEeEEEecCCCceEEE
Confidence 37888888776543 344433 35677776 467788888865 444443
No 406
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=37.83 E-value=1.8e+02 Score=27.89 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=26.9
Q ss_pred cEEEcCc------eeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecCh
Q 016397 147 GEVRLNS------RVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 188 (390)
Q Consensus 147 ~~I~l~~------~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 188 (390)
..|+.+. .+..|+......+ |.+.||.++++|.+|=+-.+
T Consensus 116 ~~ikf~~~~~~~~~~~~~~~~~~~~~--v~l~~g~~~~~dlligCDGa 161 (420)
T KOG2614|consen 116 GTIKFHSNLSCTSKDVEIETLGKKLV--VHLSDGTTVKGDLLIGCDGA 161 (420)
T ss_pred Ceeecccccccccccceeeecccccc--eecCCCcEEEeeEEEEcCch
Confidence 4566653 5666666444433 78889999999998865554
No 407
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=37.82 E-value=27 Score=33.75 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=24.3
Q ss_pred CCCCCeEEecccccCCCC-C--chhHHHHHHHHHHH
Q 016397 334 SPVEGFYLAGDYTKQKYL-A--SMEGAVLSGKLCAQ 366 (390)
Q Consensus 334 ~~~~~l~~aGd~~~~~~~-~--~~~gA~~SG~~aA~ 366 (390)
..++||||||+-++-..+ + .+.-|..||+.|++
T Consensus 373 k~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 373 KLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 347999999998765432 2 37889999999986
No 408
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=37.62 E-value=59 Score=31.27 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=32.7
Q ss_pred CCCCeEEecccccCCC----CCchhHHHHHHHHHHHHHHHHhh
Q 016397 335 PVEGFYLAGDYTKQKY----LASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 335 ~~~~l~~aGd~~~~~~----~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
..++||.+||.....+ |..-..|.+.|..+|+.|.+.+.
T Consensus 290 ~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 290 GHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred CCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 4689999999876543 67889999999999999988764
No 409
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=36.88 E-value=44 Score=34.15 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=30.1
Q ss_pred CCCCCCCCeEEecccccCCCC------CchhHHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYL------ASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~------~~~~gA~~SG~~aA~~il~~ 371 (390)
..+|.++|||.||+...+-|. .++..|+..|++|++.+...
T Consensus 378 ~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~ 424 (603)
T TIGR01811 378 DQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPN 424 (603)
T ss_pred CCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999996433231 25778999999999887654
No 410
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=36.30 E-value=18 Score=28.08 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=34.3
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE-cCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL-TNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~-~~g~~~~ad~VI~a~p~~ 189 (390)
.|+..|++.|. ++|.+..+.-+..|....| +|++ .+++.++.+.||+++...
T Consensus 28 ~lAh~L~~~l~----~~R~~~~~~~l~PD~KsQV-tveY~~~~~P~ri~tivvS~QH~ 80 (120)
T PF02772_consen 28 VLAHRLARRLA----EVRKNGELPWLRPDGKSQV-TVEYDENGKPVRIDTIVVSTQHD 80 (120)
T ss_dssp HHHHHHHHHHH----HHHHTSSSTTEEEEEEEEE-EEEEEETTEEEEEEEEEEEEEE-
T ss_pred HHHHHHHHHHH----HHHhcccCcccCCCcceeE-EEeeccCCceeeeeEEEEEecCC
Confidence 35566666665 4556666677777533335 4777 577888889988888663
No 411
>PRK06444 prephenate dehydrogenase; Provisional
Probab=35.47 E-value=54 Score=28.06 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=29.4
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhhhcCc
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 197 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~ll~~ 197 (390)
+.+-..+++.+++.|..+. + -.||.||+|+|...+.+++..
T Consensus 10 G~mG~~~~~~~~~~g~~v~--------------------~-----~~~DlVilavPv~~~~~~i~~ 50 (197)
T PRK06444 10 GRLGRVLCSILDDNGLGVY--------------------I-----KKADHAFLSVPIDAALNYIES 50 (197)
T ss_pred CcHHHHHHHHHHhCCCEEE--------------------E-----CCCCEEEEeCCHHHHHHHHHH
Confidence 4677778888876664442 1 257999999999988777643
No 412
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=35.01 E-value=58 Score=30.38 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=46.9
Q ss_pred ecCCCCccchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcC---Ce--EEEcCEEEEecChh
Q 016397 126 LDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVD 189 (390)
Q Consensus 126 ~~GG~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~---g~--~~~ad~VI~a~p~~ 189 (390)
+--|+.+.+++.+++.++++|.++.-.+.+++|++-++|+. .|...+ ++ +-.+|.|+.|+.-.
T Consensus 232 ~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~ 299 (503)
T KOG4716|consen 232 LLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRK 299 (503)
T ss_pred ecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccc
Confidence 44456688889999999999999999999999988777764 344322 22 34689999998753
No 413
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=35.00 E-value=71 Score=31.91 Aligned_cols=72 Identities=14% Similarity=0.313 Sum_probs=37.5
Q ss_pred HHHHHHHhCCCCccccccCceEEEEEEEEeCCce-eccCCCCCCCCCCCCC-CCCCeEEecccccCCCCCchhHHHHH--
Q 016397 285 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV-YKTIPNCEPCRPLQRS-PVEGFYLAGDYTKQKYLASMEGAVLS-- 360 (390)
Q Consensus 285 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~g~~~~~~~~~~-~~~~l~~aGd~~~~~~~~~~~gA~~S-- 360 (390)
+..++-+..|++. ...+.|.-+|. |.+... ....+.+.+ -++||||||.-=.+ .|-|.|.-.
T Consensus 317 VQ~~~irsipGlE----------na~i~rpgYAIEYD~v~p-~qL~~tLEtK~I~GLf~AGQINGT---tGYEEAAaQGl 382 (621)
T COG0445 317 VQEQIIRSIPGLE----------NAEILRPGYAIEYDYVDP-RQLKPTLETKKIKGLFFAGQINGT---TGYEEAAAQGL 382 (621)
T ss_pred HHHHHHHhCcccc----------cceeeccceeeeecccCh-hhcccchhhceecceEEcccccCC---chhHHHHhhhH
Confidence 5556666778764 23345444432 222211 123444544 37999999975443 344555444
Q ss_pred --HHHHHHHHHH
Q 016397 361 --GKLCAQAIVQ 370 (390)
Q Consensus 361 --G~~aA~~il~ 370 (390)
|..||.++..
T Consensus 383 iAGiNAal~~~~ 394 (621)
T COG0445 383 IAGINAALKVQG 394 (621)
T ss_pred HHHHHHHHHhcC
Confidence 4555555443
No 414
>PTZ00052 thioredoxin reductase; Provisional
Probab=34.69 E-value=54 Score=32.59 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=29.7
Q ss_pred CCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 333 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
+|..++||.+||-+.. .+.....|+..|+.+|+.|+.
T Consensus 304 ~Ts~p~IyAiGDv~~~-~~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 304 CTNIPNIFAVGDVVEG-RPELTPVAIKAGILLARRLFK 340 (499)
T ss_pred cCCCCCEEEEEEecCC-CcccHHHHHHHHHHHHHHHhC
Confidence 5678999999997753 234678899999999998864
No 415
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=33.98 E-value=64 Score=33.03 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=30.1
Q ss_pred CCCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 016397 330 PLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 330 ~~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~ 372 (390)
...+|.++|||-|||-...+......+++..|+.|++.+...+
T Consensus 389 ~~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~ 431 (608)
T PRK06854 389 YNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYI 431 (608)
T ss_pred cccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999998654322345667778888887776554
No 416
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=33.63 E-value=50 Score=35.57 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=31.8
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~ 372 (390)
..+|.++|||-|||-....+ .++-+|+..|.+|++.+....
T Consensus 369 ~~~T~v~GLfAaGE~a~~~~-nsl~~a~v~G~~Ag~~a~~~~ 409 (897)
T PRK13800 369 HARTTVPGLYAAGDLACVPH-NYMIGAFVFGDLAGAHAAGTL 409 (897)
T ss_pred CCcccCCCeEechhccCcch-hhhhhHHHhHHHHHHHHHHHH
Confidence 34678999999999765433 477788999999999887653
No 417
>PLN02815 L-aspartate oxidase
Probab=33.63 E-value=61 Score=33.06 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=30.7
Q ss_pred CCCCCCCCeEEecccccCC-C----C--CchhHHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~-~----~--~~~~gA~~SG~~aA~~il~~ 371 (390)
..+++++|||-||+-..++ | . .++-.|+..|++|++.+...
T Consensus 385 ~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~ 432 (594)
T PLN02815 385 QGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 432 (594)
T ss_pred CCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999976422 2 1 25778899999999988654
No 418
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=33.59 E-value=57 Score=33.60 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=26.9
Q ss_pred CCCCCCCCeEEecccccCCCCC------chhHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLA------SMEGAVLSGKLCAQA 367 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~------~~~gA~~SG~~aA~~ 367 (390)
..+|.++|||-||+-..+.|.+ ++-.|+..|++|++.
T Consensus 414 ~~~T~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag~~ 456 (640)
T PRK07573 414 NLMSTIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPY 456 (640)
T ss_pred CCccccCCEEECccccccCCCcccccchhHHHHHHHHHHHhHH
Confidence 3467899999999965333332 477889999988765
No 419
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=32.50 E-value=60 Score=31.91 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=29.6
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.+++..+|+|.+||.+.. +.....|+..|..||+.|..
T Consensus 305 ~l~ts~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 305 FCQTKERHIYAIGDVIGE--PQLAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred CcccCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 345667899999998753 24678899999999998753
No 420
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=32.50 E-value=66 Score=30.57 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=26.3
Q ss_pred CCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 016397 337 EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 373 (390)
Q Consensus 337 ~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~~ 373 (390)
+|||..+..=... ..||.+..+|+.+|..+..++.
T Consensus 315 ~glyY~n~iE~~a--StME~sai~akNvA~L~~~~~~ 349 (368)
T PF07156_consen 315 DGLYYTNAIESAA--STMETSAIAAKNVALLIYDRWN 349 (368)
T ss_pred CCeeEchhHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 5888887432221 4899999999999998887653
No 421
>PRK08401 L-aspartate oxidase; Provisional
Probab=32.33 E-value=61 Score=31.88 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=29.3
Q ss_pred CCCCCCCeEEeccccc-CCCC------CchhHHHHHHHHHHHHHHHH
Q 016397 332 QRSPVEGFYLAGDYTK-QKYL------ASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~-~~~~------~~~~gA~~SG~~aA~~il~~ 371 (390)
.+++++|||-||+-+. +-|. .++-.++..|++|++.+...
T Consensus 319 ~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 319 YRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred CcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 4578999999999764 2222 14566889999999988653
No 422
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=31.84 E-value=64 Score=31.35 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=29.5
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.++|..+|||.+||-+... ....-|...|+.+++.|+.
T Consensus 279 ~~~Ts~~~IyA~GD~~~~~--~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 279 YLHTTADNIWAMGDVTGGL--QFTYISLDDYRIVRDELLG 316 (441)
T ss_pred CcccCCCCEEEeeecCCCc--cchhHHHHHHHHHHHHHcC
Confidence 4567789999999998752 3567788889888888753
No 423
>PTZ00058 glutathione reductase; Provisional
Probab=31.68 E-value=68 Score=32.45 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=31.2
Q ss_pred CCCCCCCCeEEecccccCC--------------------------------CCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQK--------------------------------YLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~--------------------------------~~~~~~gA~~SG~~aA~~il~ 370 (390)
.++|..+|||.+||-+... ++....-|...|+.||+.|..
T Consensus 360 ~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 360 NQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431 (561)
T ss_pred CCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhC
Confidence 4567889999999998721 124567899999999999864
No 424
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=30.72 E-value=62 Score=31.72 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=31.7
Q ss_pred cEEEcCceeeEEEE-CC-CC--CEEEEEEcCCeEEEcCEEEEecChhhHhhh
Q 016397 147 GEVRLNSRVQKIEL-ND-DG--TVKNFLLTNGNVIDGDAYVFATPVDILKLQ 194 (390)
Q Consensus 147 ~~I~l~~~V~~I~~-~~-~g--~v~~V~~~~g~~~~ad~VI~a~p~~~~~~l 194 (390)
.+|+-+. |+.|.. ++ +| ++.+|.+.||..+.|+.||+|+....-..+
T Consensus 140 L~ire~~-V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL~~~I 190 (679)
T KOG2311|consen 140 LEIREGA-VADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFLRGQI 190 (679)
T ss_pred chhhhhh-hhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccceeeEE
Confidence 4555554 444444 22 22 267899999999999999999986554444
No 425
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=30.70 E-value=1.5e+02 Score=30.76 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=30.1
Q ss_pred HcCcEEEcCceeeEEEECCCCCE--EEEEEc---------------CCe--EEEcCEEEEecCh
Q 016397 144 SLGGEVRLNSRVQKIELNDDGTV--KNFLLT---------------NGN--VIDGDAYVFATPV 188 (390)
Q Consensus 144 ~~G~~I~l~~~V~~I~~~~~g~v--~~V~~~---------------~g~--~~~ad~VI~a~p~ 188 (390)
+.|++|++++.+.+|..+ ++.+ ..+.+. +|+ .+.+|.||+++..
T Consensus 373 ~eGV~i~~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~ 435 (652)
T PRK12814 373 AEGVSLRELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQ 435 (652)
T ss_pred HcCCcEEeccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCC
Confidence 569999999999999864 3332 112121 232 5889999999875
No 426
>PRK07804 L-aspartate oxidase; Provisional
Probab=27.76 E-value=80 Score=31.78 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=29.6
Q ss_pred CCCCCCCCeEEecccccCC-C----C--CchhHHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQD 371 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~-~----~--~~~~gA~~SG~~aA~~il~~ 371 (390)
..+|+++|||-||+-+.++ | . .++..++..|+.|++.+...
T Consensus 365 ~~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~ 412 (541)
T PRK07804 365 YGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAH 412 (541)
T ss_pred CCcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457899999999976422 2 1 24666888899999888654
No 427
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.69 E-value=1e+02 Score=30.19 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=26.6
Q ss_pred CCCCeEEecccccCCCC--CchhHHHHHHHHHHHHHH
Q 016397 335 PVEGFYLAGDYTKQKYL--ASMEGAVLSGKLCAQAIV 369 (390)
Q Consensus 335 ~~~~l~~aGd~~~~~~~--~~~~gA~~SG~~aA~~il 369 (390)
...+++.+|.-+.+.+. -++..-...+..+|..+.
T Consensus 423 ~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 423 RVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred cccCceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence 35799999998876532 367777788888888887
No 428
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=27.50 E-value=75 Score=32.13 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=42.5
Q ss_pred ccchHHHHHHHHH-cCcEEEcCceeeEEEECCCCCEEEEE---EcCCe--EEEcCEEEEecChhh
Q 016397 132 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDI 190 (390)
Q Consensus 132 ~~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~V~---~~~g~--~~~ad~VI~a~p~~~ 190 (390)
..+...|.+.+.+ .+.+|.-+..|+++..++++.+.+|. ..+|+ .+.+++||+|+....
T Consensus 138 ~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 138 HELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 4577788877766 55689999999999986555354544 34564 567899999997654
No 429
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=27.35 E-value=1.1e+02 Score=31.82 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=29.2
Q ss_pred CC-CCCCeEEecccccCC-C----C--CchhHHHHHHHHHHHHHHHHh
Q 016397 333 RS-PVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 333 ~~-~~~~l~~aGd~~~~~-~----~--~~~~gA~~SG~~aA~~il~~~ 372 (390)
++ +++|||-||+-..++ | . .++-.|+..|+.|++.+....
T Consensus 382 ~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~ 429 (657)
T PRK08626 382 ESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFC 429 (657)
T ss_pred CCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 44 599999999976422 2 1 257788999999998876653
No 430
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=27.05 E-value=67 Score=31.56 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCCCCCCCCeEEecccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 016397 330 PLQRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 330 ~~~~~~~~~l~~aGd~~~~~-~~------~~~~gA~~SG~~aA~~il~~~ 372 (390)
..-+|.++|||-+|+-..++ |. .++=.|+..|.+||+.|..+.
T Consensus 348 ~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 348 ANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred CCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 34578899999999988775 22 144557788999999988765
No 431
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=27.00 E-value=77 Score=35.30 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=30.1
Q ss_pred CCCCCCeEEecccccCC----CC--CchhHHHHHHHHHHHHHHHHh
Q 016397 333 RSPVEGFYLAGDYTKQK----YL--ASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~~----~~--~~~~gA~~SG~~aA~~il~~~ 372 (390)
.+|++|||-||+-+.+- |+ .++..|+..|+.|++.+...+
T Consensus 857 ~~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~ 902 (1167)
T PTZ00306 857 RRPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATIL 902 (1167)
T ss_pred CceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 45899999999975432 22 246779999999999887755
No 432
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=26.93 E-value=48 Score=31.81 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=23.6
Q ss_pred CCCCeEEecccccCCCC-C--chhHHHHHHHHHH
Q 016397 335 PVEGFYLAGDYTKQKYL-A--SMEGAVLSGKLCA 365 (390)
Q Consensus 335 ~~~~l~~aGd~~~~~~~-~--~~~gA~~SG~~aA 365 (390)
-++||||||+-++-..+ + .+.-|..||+.|+
T Consensus 366 ~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 366 LVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 46899999998765432 3 3677999999886
No 433
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=26.00 E-value=33 Score=31.70 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=39.5
Q ss_pred EEeecCCCCccchHH---HHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChhhHhh
Q 016397 123 MAFLDGNPPERLCLP---IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 193 (390)
Q Consensus 123 ~~~~~GG~~~~l~~~---l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~ 193 (390)
+....||+ .+|... ++..|. .| ..-...+|+++..+ ++. |.+.+|++|.+|+.|+|+....--.
T Consensus 82 fTLvGgGl-~~l~~srr~~a~liP-~~-a~wi~ekv~~f~P~-~N~---v~t~gg~eIsYdylviA~Giql~y~ 148 (446)
T KOG3851|consen 82 FTLVGGGL-KSLDSSRRKQASLIP-KG-ATWIKEKVKEFNPD-KNT---VVTRGGEEISYDYLVIAMGIQLDYG 148 (446)
T ss_pred eEEeccch-hhhhhccCccccccc-CC-cHHHHHHHHhcCCC-cCe---EEccCCcEEeeeeEeeeeeceeccc
Confidence 55567776 444321 222222 12 22233688888885 442 6778899999999999998765433
No 434
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=25.47 E-value=1.1e+02 Score=28.91 Aligned_cols=41 Identities=34% Similarity=0.454 Sum_probs=33.2
Q ss_pred HcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 144 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 144 ~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
+.+.+++++++|++|... +. . |.+.+| .+.+|..|+|+...
T Consensus 65 ~~~i~~~~~~~v~~id~~-~~-~--v~~~~g-~~~yd~LvlatGa~ 105 (415)
T COG0446 65 ATGIDVRTGTEVTSIDPE-NK-V--VLLDDG-EIEYDYLVLATGAR 105 (415)
T ss_pred hhCCEEeeCCEEEEecCC-CC-E--EEECCC-cccccEEEEcCCCc
Confidence 558999999999999984 33 3 677778 78899999998764
No 435
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=25.03 E-value=62 Score=31.76 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=32.2
Q ss_pred CCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 016397 333 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 333 ~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~ 372 (390)
.|.++++|.+||-..+. ..+--|+..|+.+|+.|...+
T Consensus 413 ~ts~~~vfa~gD~~~g~--~~vv~ai~eGr~aak~i~~~~ 450 (457)
T COG0493 413 QTSIPGVFAGGDAVRGA--ALVVWAIAEGREAAKAIDKEL 450 (457)
T ss_pred cccCCCeeeCceeccch--hhhhhHHhhchHHHHhhhHHH
Confidence 56788999999999864 688999999999999998443
No 436
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=24.56 E-value=2.1e+02 Score=26.82 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhCCCCccccccCceEEEEEEEEeCCceeccCCCCCCCCCCCC-C-CCCCeEEecccccCCCCCchhH
Q 016397 279 SEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQR-S-PVEGFYLAGDYTKQKYLASMEG 356 (390)
Q Consensus 279 ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~-~-~~~~l~~aGd~~~~~~~~~~~g 356 (390)
++..+.+++.+.+++|.+. .+.. .| .+.+..+|+. .|.+. . ..+|+|+|.-+... |+--
T Consensus 285 ~~~~~~l~~~~~~~~P~~~-------~~~~----~~-~g~~~~t~D~---~P~ig~~~~~~gl~~~~G~~g~----G~~~ 345 (376)
T PRK11259 285 AEDGAELRPFLRNYLPGVG-------PCLR----GA-ACTYTNTPDE---HFIIDTLPGHPNVLVASGCSGH----GFKF 345 (376)
T ss_pred HHHHHHHHHHHHHHCCCCC-------cccc----ce-EEecccCCCC---CceeecCCCCCCEEEEecccch----hhhc
Confidence 5678888999999999753 1211 11 1212223322 12211 1 25799998755443 4566
Q ss_pred HHHHHHHHHHHHHHH
Q 016397 357 AVLSGKLCAQAIVQD 371 (390)
Q Consensus 357 A~~SG~~aA~~il~~ 371 (390)
|-..|+..|+.|+..
T Consensus 346 ap~~g~~la~li~~~ 360 (376)
T PRK11259 346 ASVLGEILADLAQDG 360 (376)
T ss_pred cHHHHHHHHHHHhcC
Confidence 666899999988764
No 437
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.32 E-value=1.2e+02 Score=28.59 Aligned_cols=66 Identities=21% Similarity=0.349 Sum_probs=51.1
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEECC-CCCEEEEEEcCCeEEEcCEEEEecChhhHhhhcCc
Q 016397 132 ERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 197 (390)
Q Consensus 132 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~-~g~v~~V~~~~g~~~~ad~VI~a~p~~~~~~ll~~ 197 (390)
..|..+|.+.+++-.++|....++++++... .+....|++.+|....++.||+++.+..-.-.+|.
T Consensus 266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPG 332 (520)
T COG3634 266 PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPG 332 (520)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCc
Confidence 4788899988888889999999999999732 12233589999999999999999988554333554
No 438
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=22.34 E-value=77 Score=30.69 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=26.6
Q ss_pred CCCCeEEecccccCCCC----CchhHHHHHHHHHHHHHH
Q 016397 335 PVEGFYLAGDYTKQKYL----ASMEGAVLSGKLCAQAIV 369 (390)
Q Consensus 335 ~~~~l~~aGd~~~~~~~----~~~~gA~~SG~~aA~~il 369 (390)
.++|||.||.-+.+..| .+-.-|+.||..||++|+
T Consensus 381 ~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 381 TIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred ccccceEechhhcCCChHhcCCCchhHHHHHHHHHHhhC
Confidence 48999999987765322 244568999999999874
No 439
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=22.10 E-value=1.7e+02 Score=28.88 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=27.8
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 372 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~~~ 372 (390)
..+..+|||+||....+ --+..++.+|..||.+...-+
T Consensus 507 v~s~~~GIflAG~aqgP---kdI~~siaqa~aAA~kA~~~l 544 (622)
T COG1148 507 VDSNRDGIFLAGAAQGP---KDIADSIAQAKAAAAKAAQLL 544 (622)
T ss_pred ccccCCcEEEeecccCC---ccHHHHHHHhHHHHHHHHHHh
Confidence 34567899999966555 578888888888887655443
No 440
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=21.82 E-value=87 Score=31.46 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=20.7
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEE-EcCEEEEecChhhHhhhcCc
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVI-DGDAYVFATPVDILKLQLPE 197 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~-~ad~VI~a~p~~~~~~ll~~ 197 (390)
+.+.+...|.. |+|.....|.++.. + +|...||+++ .+|.||++|.-..--..+++
T Consensus 283 ind~l~~~i~~--G~i~vk~~I~~~~~--~----~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~ 339 (531)
T PF00743_consen 283 INDELPNRIRS--GRIKVKPDIKRFTE--N----SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDE 339 (531)
T ss_dssp ------------------EE-EEEE-S--S----EEEETTSEEEEE-SEEEE---EE---TTB-T
T ss_pred ccccccccccc--cccccccccccccc--c----ccccccccccccccccccccccccccccccc
Confidence 44555555542 45655566777652 2 3678899765 69999999987544344443
No 441
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=21.77 E-value=1.1e+02 Score=31.27 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=23.4
Q ss_pred CCCCCCCCeEEecccccCC-CCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQK-YLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~-~~~~~~gA~~SG~~aA~~il~ 370 (390)
..+|.++|||-|||-...+ | +..-.++..|..++..+..
T Consensus 401 ~~~T~i~gLyA~Ge~~~~~~h-~l~~nsl~eg~~ag~~a~~ 440 (614)
T TIGR02061 401 NRMTTVEGLFTCGDGVGASPH-KFSSGSFTEGRIAAKAAVR 440 (614)
T ss_pred CCccccCCEEeceecccCcch-hhHHhHHHHHHHHHHHHHH
Confidence 4467899999999965543 2 1223345555555555443
No 442
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=21.76 E-value=1.3e+02 Score=29.20 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=27.2
Q ss_pred CCCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.+++..+|||.+||-+... ....-|+..|..+++.+..
T Consensus 278 ~~~t~~~~IyaiGD~~~~~--~~~~~a~~~~~~~~~~~~~ 315 (438)
T PRK07251 278 YCQTSVPGVFAVGDVNGGP--QFTYISLDDFRIVFGYLTG 315 (438)
T ss_pred CcccCCCCEEEeeecCCCc--ccHhHHHHHHHHHHHHHcC
Confidence 3567789999999987542 3456677778777777653
No 443
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=21.46 E-value=1.3e+02 Score=31.23 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=27.4
Q ss_pred CCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 336 VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 336 ~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.+|||.+||-+.. +.....|...|+.+|+.|..
T Consensus 462 v~~IYAiGDv~g~--~~La~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 462 YDNIFCIGDANGK--QMLAHTASHQALKVVDWIEG 494 (659)
T ss_pred CCCEEEEEecCCC--ccCHHHHHHHHHHHHHHHcC
Confidence 5899999998753 24678899999999999975
No 444
>PRK07395 L-aspartate oxidase; Provisional
Probab=21.33 E-value=77 Score=31.99 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=27.9
Q ss_pred CCCCCCCCeEEecccccCC-CC------CchhHHHHHHHHHHHHHH
Q 016397 331 LQRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIV 369 (390)
Q Consensus 331 ~~~~~~~~l~~aGd~~~~~-~~------~~~~gA~~SG~~aA~~il 369 (390)
..+++++|||-||+-+.++ |. -++-.++..|++|++.+.
T Consensus 355 ~~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 355 NNQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred CCcccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999976422 21 145667888999988774
No 445
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=21.17 E-value=95 Score=30.54 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=20.1
Q ss_pred EEEcCCeEEEcCEEEEecChhhHhhhc
Q 016397 169 FLLTNGNVIDGDAYVFATPVDILKLQL 195 (390)
Q Consensus 169 V~~~~g~~~~ad~VI~a~p~~~~~~ll 195 (390)
|++.||+++.+|.||+++....-..++
T Consensus 267 V~f~DG~~~~~D~Ii~~TGy~~~~pfL 293 (461)
T PLN02172 267 IVFKNGKVVYADTIVHCTGYKYHFPFL 293 (461)
T ss_pred EEECCCCCccCCEEEECCcCCcccccc
Confidence 677889888999999998764333333
No 446
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=21.09 E-value=2.6e+02 Score=30.63 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=32.1
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEE--------------EEcCCe--EEEcCEEEEecChh
Q 016397 134 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNF--------------LLTNGN--VIDGDAYVFATPVD 189 (390)
Q Consensus 134 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V--------------~~~~g~--~~~ad~VI~a~p~~ 189 (390)
..+.+.+.+ +.|+++++++.+++|. + ++++.. .+.+|+ ++.+|.||+|+...
T Consensus 708 ~~eEl~~al-eeGVe~~~~~~p~~I~-~--g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~ 775 (1012)
T TIGR03315 708 SREELEEAL-EDGVDFKELLSPESFE-D--GTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ 775 (1012)
T ss_pred CHHHHHHHH-HcCCEEEeCCceEEEE-C--CeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc
Confidence 344444444 5689999998888886 1 222110 112343 68999999998763
No 447
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.04 E-value=1e+02 Score=28.91 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=31.2
Q ss_pred CCCCCCCeEEecccccCCCCCchhHHHHHHHHHHHHHHH
Q 016397 332 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 370 (390)
Q Consensus 332 ~~~~~~~l~~aGd~~~~~~~~~~~gA~~SG~~aA~~il~ 370 (390)
.++.++++|-.||-+... |.-.+-|++||+..|+++.+
T Consensus 327 e~t~vp~vyAvGDIl~~k-pELTPvAIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 327 EATNVPYVYAVGDILEDK-PELTPVAIQSGRLLARRLFA 364 (503)
T ss_pred HhcCCCceEEecceecCC-cccchhhhhhchHHHHHHhc
Confidence 456789999999987653 45678999999999999865
No 448
>TIGR01034 metK S-adenosylmethionine synthetase. Tandem isozymes of this S-adenosylmethionine synthetase in E. coli are designated MetK and MetX.
Probab=20.82 E-value=96 Score=29.21 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=35.0
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.|+..|.++|. ++|.+..+.-+..+....| +|++.+|+..+-|.||+++...
T Consensus 136 ~lAh~l~~~l~----~~Rk~g~~~~l~PD~KtQV-tveY~~~~P~rv~tivvS~QH~ 187 (377)
T TIGR01034 136 TLAHKLLKRAA----ELRKSGTLPWLRPDGKSQV-TVQYEDNKPVRVDTIVLSTQHD 187 (377)
T ss_pred HHHHHHHHHHH----HHHhcCCCCeecCCCceEE-EEEEECCceeEEEEEEEecCCC
Confidence 35566666664 5666666777777544445 4777787777889888888653
No 449
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=20.79 E-value=2.5e+02 Score=30.60 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEE
Q 016397 136 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL 171 (390)
Q Consensus 136 ~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~ 171 (390)
+.+.+.+ +.|++++.+....+|..+++|++++|++
T Consensus 645 eEv~~A~-eEGV~f~~~~~P~~i~~d~~g~v~~l~~ 679 (1028)
T PRK06567 645 EELIYAL-ALGVDFKENMQPLRINVDKYGHVESVEF 679 (1028)
T ss_pred HHHHHHH-HcCcEEEecCCcEEEEecCCCeEEEEEE
Confidence 4444444 4699999999999998866777766654
No 450
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=20.56 E-value=1.3e+02 Score=26.87 Aligned_cols=28 Identities=25% Similarity=0.590 Sum_probs=19.6
Q ss_pred EEEcCceeeEEEECCCCCEEEEEEcCCeEE
Q 016397 148 EVRLNSRVQKIELNDDGTVKNFLLTNGNVI 177 (390)
Q Consensus 148 ~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~ 177 (390)
.+.++++|++.+...+|.+ |++++|..+
T Consensus 180 sL~~~s~VtSlEvs~dG~i--lTia~gssV 207 (334)
T KOG0278|consen 180 SLEFNSPVTSLEVSQDGRI--LTIAYGSSV 207 (334)
T ss_pred EEecCCCCcceeeccCCCE--EEEecCcee
Confidence 4677888888887777776 566666543
No 451
>PRK12459 S-adenosylmethionine synthetase; Provisional
Probab=20.46 E-value=93 Score=29.41 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEECCCCCEEEEEEcCCeEEEcCEEEEecChh
Q 016397 133 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 189 (390)
Q Consensus 133 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 189 (390)
.|+..|.+.|. ++|.+..+.-+..+....| +|++.+|+..+-|.||+++...
T Consensus 143 ~lAh~l~~~l~----~~Rk~g~~~~l~PD~KsQV-tv~Y~~~~P~rv~tivvS~QH~ 194 (386)
T PRK12459 143 VLAHRLAKRLD----QARKDGLLPGLLPDGKTQV-TVEYEDGRPVRVDTIVVSAQHD 194 (386)
T ss_pred HHHHHHHHHHH----HHHhcCCCCeecCCCceEE-EEEeeCCceeEEEEEEEeeccC
Confidence 34566666664 4666666677777544445 4777787777889888887654
Done!