Query 016398
Match_columns 390
No_of_seqs 274 out of 974
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:30:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 1.1E-57 2.3E-62 437.9 25.7 273 70-383 47-343 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 9.5E-52 2E-56 384.6 13.8 189 109-305 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 7.5E-48 1.6E-52 355.9 21.6 171 121-308 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 98.9 2.9E-07 6.4E-12 91.7 22.2 237 97-352 1-286 (314)
5 PF14592 Chondroitinas_B: Chon 98.4 7.7E-06 1.7E-10 84.2 14.8 181 96-283 6-233 (425)
6 PLN03003 Probable polygalactur 98.2 5.9E-05 1.3E-09 78.8 15.8 150 106-271 104-269 (456)
7 PLN02218 polygalacturonase ADP 98.0 0.00018 3.8E-09 74.9 16.7 123 146-289 218-344 (431)
8 PF13229 Beta_helix: Right han 98.0 0.00012 2.5E-09 63.1 11.9 133 145-309 2-138 (158)
9 PLN02188 polygalacturonase/gly 97.8 0.00066 1.4E-08 70.1 16.6 104 146-270 181-285 (404)
10 PLN02793 Probable polygalactur 97.8 0.00049 1.1E-08 71.9 15.5 105 146-271 203-308 (443)
11 PLN02155 polygalacturonase 97.8 0.00041 8.8E-09 71.5 14.7 121 146-287 171-296 (394)
12 PLN03010 polygalacturonase 97.8 0.0022 4.7E-08 66.4 19.5 99 185-287 205-307 (409)
13 PF00295 Glyco_hydro_28: Glyco 97.7 0.0005 1.1E-08 68.9 13.1 124 143-287 115-242 (326)
14 TIGR03808 RR_plus_rpt_1 twin-a 97.7 0.0025 5.5E-08 66.3 17.9 115 96-230 56-176 (455)
15 PF01696 Adeno_E1B_55K: Adenov 97.6 0.0055 1.2E-07 62.7 18.9 185 78-310 47-242 (386)
16 TIGR03805 beta_helix_1 paralle 97.6 0.0045 9.8E-08 61.9 17.5 163 123-290 58-247 (314)
17 PF13229 Beta_helix: Right han 97.5 0.0013 2.8E-08 56.5 11.3 131 143-305 23-158 (158)
18 PLN02218 polygalacturonase ADP 97.5 0.0062 1.3E-07 63.5 18.1 135 146-311 195-348 (431)
19 PF12708 Pectate_lyase_3: Pect 97.3 0.0082 1.8E-07 55.1 15.0 39 97-136 21-62 (225)
20 PLN02155 polygalacturonase 97.3 0.01 2.2E-07 61.2 16.3 132 122-284 116-268 (394)
21 TIGR03808 RR_plus_rpt_1 twin-a 97.2 0.0097 2.1E-07 62.0 15.4 159 128-307 121-332 (455)
22 PF05048 NosD: Periplasmic cop 97.2 0.0063 1.4E-07 57.5 13.0 129 144-306 36-166 (236)
23 PF05048 NosD: Periplasmic cop 97.1 0.021 4.6E-07 53.9 15.4 121 127-284 44-167 (236)
24 PF00295 Glyco_hydro_28: Glyco 97.0 0.017 3.7E-07 57.9 14.7 109 122-260 61-184 (326)
25 PLN02197 pectinesterase 97.0 0.011 2.3E-07 63.9 13.5 136 50-214 244-410 (588)
26 PLN02480 Probable pectinestera 97.0 0.022 4.8E-07 57.8 14.9 119 95-231 61-197 (343)
27 PF07602 DUF1565: Protein of u 97.0 0.046 1E-06 53.1 16.4 190 95-309 16-243 (246)
28 PLN03010 polygalacturonase 96.9 0.016 3.4E-07 60.1 13.4 73 146-241 160-237 (409)
29 PLN03003 Probable polygalactur 96.9 0.014 3.1E-07 61.2 13.1 52 185-238 208-268 (456)
30 PLN02793 Probable polygalactur 96.9 0.026 5.6E-07 59.1 14.7 109 122-260 144-269 (443)
31 PLN02188 polygalacturonase/gly 96.6 0.048 1E-06 56.5 14.4 159 122-311 123-313 (404)
32 smart00656 Amb_all Amb_all dom 96.5 0.12 2.7E-06 48.0 15.1 135 127-284 45-188 (190)
33 PLN02432 putative pectinestera 96.2 0.093 2E-06 52.2 13.0 111 96-231 25-153 (293)
34 PLN02682 pectinesterase family 95.9 0.15 3.2E-06 52.4 13.2 118 96-231 84-228 (369)
35 PLN02176 putative pectinestera 95.8 0.24 5.3E-06 50.2 14.1 119 96-231 53-188 (340)
36 COG5434 PGU1 Endopygalactoruna 95.7 0.15 3.2E-06 54.7 12.6 102 145-270 263-375 (542)
37 PF00544 Pec_lyase_C: Pectate 95.5 0.2 4.3E-06 46.9 11.6 118 142-282 74-200 (200)
38 PLN02416 probable pectinestera 95.5 0.18 3.9E-06 54.2 12.6 98 96-213 244-362 (541)
39 PLN03043 Probable pectinestera 95.5 1.9 4.2E-05 46.4 20.4 164 96-283 237-460 (538)
40 PLN02773 pectinesterase 95.4 0.31 6.7E-06 49.1 13.1 99 96-214 19-148 (317)
41 PLN02170 probable pectinestera 95.3 0.26 5.5E-06 52.8 13.0 98 96-213 239-358 (529)
42 PLN02634 probable pectinestera 94.9 0.61 1.3E-05 47.7 13.8 118 96-231 70-214 (359)
43 PLN02301 pectinesterase/pectin 94.9 0.37 8.1E-06 51.9 12.7 98 96-213 250-368 (548)
44 PLN02304 probable pectinestera 94.9 0.57 1.2E-05 48.3 13.5 118 96-231 89-227 (379)
45 PLN02201 probable pectinestera 94.7 0.47 1E-05 50.8 13.0 99 96-214 220-339 (520)
46 PLN02671 pectinesterase 94.6 0.64 1.4E-05 47.6 13.2 117 96-231 73-218 (359)
47 COG3420 NosD Nitrous oxidase a 94.6 0.64 1.4E-05 47.1 12.6 135 121-278 45-200 (408)
48 PLN02497 probable pectinestera 94.5 0.71 1.5E-05 46.8 13.1 120 96-231 46-182 (331)
49 PLN02488 probable pectinestera 94.5 0.59 1.3E-05 49.8 12.8 98 96-213 211-329 (509)
50 PLN02708 Probable pectinestera 94.4 0.56 1.2E-05 50.6 12.8 115 96-230 255-409 (553)
51 PLN02665 pectinesterase family 94.4 5.7 0.00012 40.9 19.5 121 96-230 82-238 (366)
52 COG3420 NosD Nitrous oxidase a 94.3 1.9 4.2E-05 43.8 15.4 93 123-231 100-192 (408)
53 PLN02484 probable pectinestera 94.3 0.54 1.2E-05 51.1 12.6 116 96-230 286-439 (587)
54 PLN02995 Probable pectinestera 94.3 0.61 1.3E-05 50.2 12.8 112 96-230 237-371 (539)
55 PLN02933 Probable pectinestera 94.1 0.77 1.7E-05 49.3 13.0 99 96-214 232-351 (530)
56 PLN02745 Putative pectinestera 94.1 0.77 1.7E-05 50.0 13.2 99 96-214 299-418 (596)
57 PLN02217 probable pectinestera 94.0 0.71 1.5E-05 50.8 12.7 163 96-283 264-484 (670)
58 PLN02990 Probable pectinestera 94.0 0.86 1.9E-05 49.4 13.2 115 96-230 273-426 (572)
59 PLN02916 pectinesterase family 94.0 0.81 1.8E-05 48.8 12.8 99 96-214 201-323 (502)
60 PLN02506 putative pectinestera 94.0 0.71 1.5E-05 49.7 12.4 99 96-214 246-365 (537)
61 PF01095 Pectinesterase: Pecti 93.8 0.7 1.5E-05 46.0 11.4 115 96-232 14-148 (298)
62 PLN02314 pectinesterase 93.8 0.76 1.6E-05 50.0 12.4 114 96-229 292-443 (586)
63 PLN02313 Pectinesterase/pectin 93.8 0.77 1.7E-05 49.9 12.4 115 96-230 289-441 (587)
64 PLN02713 Probable pectinestera 93.5 1 2.2E-05 48.8 12.7 98 96-213 264-385 (566)
65 PLN02468 putative pectinestera 93.3 1 2.2E-05 48.8 12.5 97 96-212 272-389 (565)
66 COG5434 PGU1 Endopygalactoruna 91.0 1.4 3E-05 47.5 9.8 133 104-259 236-395 (542)
67 PRK10531 acyl-CoA thioesterase 90.4 6.9 0.00015 41.0 14.1 52 150-214 204-256 (422)
68 PF14592 Chondroitinas_B: Chon 90.1 2.8 6.1E-05 43.9 10.9 115 185-310 182-324 (425)
69 COG3866 PelB Pectate lyase [Ca 88.0 3.7 8.1E-05 41.2 9.5 121 186-309 115-252 (345)
70 PF12708 Pectate_lyase_3: Pect 87.3 6.6 0.00014 35.7 10.4 48 154-216 94-141 (225)
71 PF08480 Disaggr_assoc: Disagg 84.4 6.1 0.00013 37.0 8.4 88 220-309 2-110 (198)
72 PF03211 Pectate_lyase: Pectat 82.1 11 0.00023 36.1 9.4 55 181-238 90-145 (215)
73 TIGR03804 para_beta_helix para 62.6 14 0.00031 25.5 3.9 40 189-230 1-40 (44)
74 PF07602 DUF1565: Protein of u 50.4 78 0.0017 30.9 8.0 90 125-237 95-193 (246)
75 PRK10123 wcaM putative colanic 47.5 36 0.00079 34.3 5.3 55 148-213 264-318 (464)
76 PF12541 DUF3737: Protein of u 45.9 2.9E+02 0.0062 27.5 11.0 29 251-283 195-223 (277)
77 PF08480 Disaggr_assoc: Disagg 45.8 2.7E+02 0.0058 26.4 12.6 71 195-266 33-112 (198)
78 PF07822 Toxin_13: Neurotoxin 43.5 3.6 7.7E-05 30.1 -1.7 19 43-61 20-38 (55)
79 TIGR03804 para_beta_helix para 42.2 73 0.0016 21.9 4.8 42 145-208 1-42 (44)
80 PF01696 Adeno_E1B_55K: Adenov 38.4 4.9E+02 0.011 27.2 13.5 98 146-260 139-238 (386)
81 PLN02698 Probable pectinestera 32.4 1.6E+02 0.0034 31.7 7.6 51 145-213 264-315 (497)
82 PF12541 DUF3737: Protein of u 27.8 1.4E+02 0.003 29.7 5.8 23 219-241 57-79 (277)
83 KOG1777 Putative Zn-finger pro 25.8 69 0.0015 34.1 3.4 54 110-166 458-515 (625)
84 smart00710 PbH1 Parallel beta- 21.9 1.2E+02 0.0026 17.3 2.7 16 196-211 2-17 (26)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-57 Score=437.90 Aligned_cols=273 Identities=29% Similarity=0.371 Sum_probs=224.5
Q ss_pred CCcCCCCCeEEEecCCCCCCCCCCchhHHHhhhCCCCeEEEEeeceEEEeC------ceEEeccCceEEecCcceEEecC
Q 016398 70 NAVGGRDGEIYIVKSKDDDPVDPIPGSLRYAVIQEEPLWIIFDHDMVINLK------QELVMNSYKTIDGRGFNVQMSNG 143 (390)
Q Consensus 70 ~ttGG~gG~v~~VT~~~d~~~~~~pGsLr~av~~~~P~~IvF~~~g~I~l~------~~L~i~snkTI~G~ga~i~I~~G 143 (390)
+||||.||.+++|++.+| |..++...+|.++|+-+.|+|.+. .+|.+.|||||.|.|++.+|. |
T Consensus 47 GTtGG~~g~~v~v~ta~~---------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~-g 116 (345)
T COG3866 47 GTTGGSGGDIVTVRTAND---------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV-G 116 (345)
T ss_pred CcccCCCCcEEEEeeHHH---------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-e
Confidence 799999999999999999 999999999996666678888887 467778999999999999998 6
Q ss_pred CcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEE-eCCccEEEEeeEEec--------cccCeEE
Q 016398 144 PCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISI-FGSRDIWIDHCTFSH--------CYDGLID 214 (390)
Q Consensus 144 ~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi-~gs~nVWIDHcs~s~--------~~Dglid 214 (390)
.+|+|+.+.|||||||+|++...++ ...|+|+| .+++|||||||+|+. ..||++|
T Consensus 117 ~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~D 180 (345)
T COG3866 117 GGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVD 180 (345)
T ss_pred ceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEE
Confidence 6899999999999999999875321 12699999 679999999999999 6899999
Q ss_pred eeeCCeeEEEEceeeeccCeeeeeccCCCC-CCCCcceEEEEeeEecCCCCCCCCcccCceEEEEcceeeCCcc--eEEe
Q 016398 215 IVYGSTAITISNNYMFHHNEVMLMGHSDDF-SADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEM--YAIG 291 (390)
Q Consensus 215 i~~~s~~ITISnn~f~~H~k~~L~G~sd~~-~~d~~~~vTi~~N~f~~n~~~R~Pr~r~G~~hvvNN~~~~~~~--yaig 291 (390)
|++++++||||||+|++|+|.+|+|.+|+. .+|...+||+||||| +|+.||+||+|||.+||+||||..... ||++
T Consensus 181 ik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~ 259 (345)
T COG3866 181 IKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAIT 259 (345)
T ss_pred eccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEEe
Confidence 999999999999999999999999999984 456789999999999 799999999999999999999996554 5666
Q ss_pred cCCCceEEEEecEEEcCCCCCccceeeeccccCccccccCeEeecCceEEeccEEcCCCCCCC------CCCCCCCceee
Q 016398 292 GSANPTINSQGNVFIASNDESTKEVTKHEIISEDDEWKKWNWRSEGDLMLNGAFFTPSGQETP------ASYMKASSMVA 365 (390)
Q Consensus 292 g~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~~~~~~~~~~w~s~gd~~~nG~~f~~sG~~~~------~~~~~~~~~~~ 365 (390)
.+..++|++|+|||+....+..-.-+++. ..+|+- -+|++|..++.... -.+.+.|+|++
T Consensus 260 iG~~AkiyvE~NyF~~~~~~~~f~dt~~~---------~GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Ytv 325 (345)
T COG3866 260 IGTSAKIYVENNYFENGSEGLGFLDTKGT---------SGYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYTV 325 (345)
T ss_pred eccceEEEEecceeccCCCCceeeecCCc---------cceEEe-----ccCceecccCCcccccCCccCCCCCCccccc
Confidence 55569999999999998654211111111 124431 23556655554332 23466799999
Q ss_pred cCccchHHHhccCcCCCC
Q 016398 366 RPATSLLTASSPSAGALS 383 (390)
Q Consensus 366 ~pas~~~~~vt~~AGa~~ 383 (390)
+|++++.+.|+.+||+.+
T Consensus 326 d~~~dVks~Vt~yAGaGk 343 (345)
T COG3866 326 DPPEDVKSFVTNYAGAGK 343 (345)
T ss_pred CChHHhhhhhhcccccee
Confidence 999988888999999764
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=9.5e-52 Score=384.63 Aligned_cols=189 Identities=41% Similarity=0.661 Sum_probs=159.9
Q ss_pred EEEeeceEEEeCceEEeccCceEEecCcceEEecCCcEEEe-ccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCC
Q 016398 109 IIFDHDMVINLKQELVMNSYKTIDGRGFNVQMSNGPCISIY-NVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDG 187 (390)
Q Consensus 109 IvF~~~g~I~l~~~L~i~snkTI~G~ga~i~I~~G~gi~i~-~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~ 187 (390)
+||+++|+|+++.+|.|.|||||+|+|++++|. |.|+.+. +++|||||||+|+++. ++..++..+.....++
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~~~~~ 75 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGDSSDG 75 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEEECS-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCccccCC
Confidence 456778899999999999999999999999998 6688886 8999999999999851 1111111222234789
Q ss_pred CeEEEeCCccEEEEeeEEecc--------ccCeEEeeeCCeeEEEEceeeeccCeeeeeccCCCCCCCCcceEEEEeeEe
Q 016398 188 DGISIFGSRDIWIDHCTFSHC--------YDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFF 259 (390)
Q Consensus 188 DaIsi~gs~nVWIDHcs~s~~--------~Dglidi~~~s~~ITISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f 259 (390)
|+|+|++++|||||||+|+|+ .||++|++.++++||||||+|++|+|++|+|++|....+..++||||||||
T Consensus 76 Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f 155 (200)
T PF00544_consen 76 DAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYF 155 (200)
T ss_dssp -SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EE
T ss_pred CeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEE
Confidence 999999999999999999999 999999999999999999999999999999999887777779999999999
Q ss_pred cCCCCCCCCcccCceEEEEcceeeCCcceEEecCCCceEEEEecEE
Q 016398 260 GDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVF 305 (390)
Q Consensus 260 ~~n~~~R~Pr~r~G~~hvvNN~~~~~~~yaigg~~~~~i~~egN~F 305 (390)
.++.+||||+|+|++|+|||||+++..|+++.++++++++|+|||
T Consensus 156 -~~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 156 -ANTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp -EEEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred -CchhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 689999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=7.5e-48 Score=355.91 Aligned_cols=171 Identities=56% Similarity=0.918 Sum_probs=158.1
Q ss_pred ceEEeccCceEEecCcceEEecCCcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEE
Q 016398 121 QELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWI 200 (390)
Q Consensus 121 ~~L~i~snkTI~G~ga~i~I~~G~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWI 200 (390)
.+|.|+|||||+|+|++++|. |.+|+++.++|||||||+|++..+. . ..++|+|++++++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~-----------~----~~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV-----------Y----GSDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC-----------C----CCCCCEEEEeCCCeEEE
Confidence 578899999999999999997 7789998899999999999976432 1 15789999999999999
Q ss_pred EeeEEecc---------ccCeEEeeeCCeeEEEEceeeeccCeeeeeccCCCCCCCCcceEEEEeeEecCCCCCCCCccc
Q 016398 201 DHCTFSHC---------YDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCR 271 (390)
Q Consensus 201 DHcs~s~~---------~Dglidi~~~s~~ITISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~Pr~r 271 (390)
|||+|+|+ .|+++|++.++++||||||+|.+|+|++|+|++|+...+..++||+||||| .++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~-~~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYF-GNLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEE-cCcccCCCccc
Confidence 99999998 899999999999999999999999999999999887666689999999999 47999999999
Q ss_pred CceEEEEcceeeCCcceEEecCCCceEEEEecEEEcC
Q 016398 272 HGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVFIAS 308 (390)
Q Consensus 272 ~G~~hvvNN~~~~~~~yaigg~~~~~i~~egN~F~~~ 308 (390)
+|++|++||||++|..|+++.+.++++++|+|||+..
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999875
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.90 E-value=2.9e-07 Score=91.66 Aligned_cols=237 Identities=16% Similarity=0.235 Sum_probs=132.6
Q ss_pred HHHhhhCCCCe-EEEEeeceEEEeCceEEec-cCceEEecCcceEEec-------CCcEEEeccccEEEEceEEEeeccC
Q 016398 97 LRYAVIQEEPL-WIIFDHDMVINLKQELVMN-SYKTIDGRGFNVQMSN-------GPCISIYNVSNIIIHNIYIHDCVPA 167 (390)
Q Consensus 97 Lr~av~~~~P~-~IvF~~~g~I~l~~~L~i~-snkTI~G~ga~i~I~~-------G~gi~i~~~~NVIIrnL~i~~~~~~ 167 (390)
|.+|+.+-+|- +|++ ..|+-++...|.|. +++||.|.+..-++.+ +.+|.+ .++||.|++|+|++..
T Consensus 1 iQ~Ai~~A~~GDtI~l-~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~-- 76 (314)
T TIGR03805 1 LQEALIAAQPGDTIVL-PEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTK-- 76 (314)
T ss_pred CHhHHhhCCCCCEEEE-CCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCC--
Confidence 35566655554 3444 45677777778887 8899998876422222 334555 5778888888877542
Q ss_pred CCce-eeCCCC------CCCC----CCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeEEEEceeeeccCeee
Q 016398 168 GSAV-VRDSPK------HYGP----RGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVM 236 (390)
Q Consensus 168 ~~~~-i~~~~~------~~g~----~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~~H~k~~ 236 (390)
+.+. ++.+.. ...| ......+||.+..++++-|.+|.++...|--|-+ ..+++++|++|.+.+-..+.
T Consensus 77 ~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv-~~s~~~~v~nN~~~~n~~GI 155 (314)
T TIGR03805 77 GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGI 155 (314)
T ss_pred CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE-CCCCCeEEECCEEccCcceE
Confidence 1111 100000 0000 0013467888888888888888888877744444 46788888888887544444
Q ss_pred eeccCCCCCCCCcceEEEEeeEecCCCCCCC-----C---cccCceEEEEcceeeCCcc----------------eEEec
Q 016398 237 LMGHSDDFSADKNMQVTIAFNFFGDGLVQRM-----P---RCRHGFFHIVNNIYTGWEM----------------YAIGG 292 (390)
Q Consensus 237 L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~-----P---r~r~G~~hvvNN~~~~~~~----------------yaigg 292 (390)
.+-.+. ++.+.+|.+..+.. -. | .+-...+.|.||.+.+... .+|-.
T Consensus 156 ~i~~S~--------~~~v~~N~~~~N~~-Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i 226 (314)
T TIGR03805 156 EIENSQ--------NADVYNNIATNNTG-GILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVV 226 (314)
T ss_pred EEEecC--------CcEEECCEEeccce-eEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEE
Confidence 443332 45667777743321 11 1 1222357778887753211 12222
Q ss_pred CCCceEEEEecEEEcCCCCCccceeeeccc-----cCccccccCeEeecCceEEeccEEcCCCCC
Q 016398 293 SANPTINSQGNVFIASNDESTKEVTKHEII-----SEDDEWKKWNWRSEGDLMLNGAFFTPSGQE 352 (390)
Q Consensus 293 ~~~~~i~~egN~F~~~~~~~~k~vt~r~~~-----~~~~~~~~~~w~s~gd~~~nG~~f~~sG~~ 352 (390)
.....+.+++|.|.......- .++..... +.+..|..+ ..++.+-+|.|...|..
T Consensus 227 ~~~~~v~I~~N~i~~n~~~~i-~~~~~~~~~~~~~~~~~~~~~~----~~~v~i~~N~~~~~g~~ 286 (314)
T TIGR03805 227 MANRDVEIFGNVISNNDTANV-LISSYHSTGLPDQPPDDGFDPY----PRNISIHDNTFSDGGTN 286 (314)
T ss_pred EcccceEEECCEEeCCcceeE-EEEecccccCCCCCcCCCccCC----CcceEEEccEeecCCCC
Confidence 334678899999988765421 12211110 122223322 26777888888877763
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.37 E-value=7.7e-06 Score=84.21 Aligned_cols=181 Identities=16% Similarity=0.181 Sum_probs=78.9
Q ss_pred hHHHhhhC--CCCeEEEEeeceEEEeCceEEec------cCceEEecCc-ceEEecCCcEEEeccccEEEEceEEEeecc
Q 016398 96 SLRYAVIQ--EEPLWIIFDHDMVINLKQELVMN------SYKTIDGRGF-NVQMSNGPCISIYNVSNIIIHNIYIHDCVP 166 (390)
Q Consensus 96 sLr~av~~--~~P~~IvF~~~g~I~l~~~L~i~------snkTI~G~ga-~i~I~~G~gi~i~~~~NVIIrnL~i~~~~~ 166 (390)
+|..|+.+ ++-.+++ .+|+-+ ..+|.+. ..+||..+.+ .+.|.+..+|+| ..+.++|.+|.|++..+
T Consensus 6 ~lq~Ai~~a~pGD~I~L--~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i-~G~yl~v~GL~F~ng~~ 81 (425)
T PF14592_consen 6 ELQSAIDNAKPGDTIVL--ADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRI-SGSYLVVSGLKFKNGYT 81 (425)
T ss_dssp HHHHHHHH--TT-EEEE---SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE--
T ss_pred HHHHHHHhCCCCCEEEE--CCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEE-EeeeEEEeCeEEecCCC
Confidence 49999875 5544444 445544 2345542 4688888754 477775557888 47899999999998754
Q ss_pred CCCceeeCCCCC---CC------------CCC-CCCCCeEEE----eCCccEEEEeeEEecc-ccC-eEEee-------e
Q 016398 167 AGSAVVRDSPKH---YG------------PRG-RSDGDGISI----FGSRDIWIDHCTFSHC-YDG-LIDIV-------Y 217 (390)
Q Consensus 167 ~~~~~i~~~~~~---~g------------~~~-~~~~DaIsi----~gs~nVWIDHcs~s~~-~Dg-lidi~-------~ 217 (390)
.....|..+... ++ +.. ..+.+...+ --++|--||||+|..- ..| +|-+. .
T Consensus 82 ~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~ 161 (425)
T PF14592_consen 82 PTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQS 161 (425)
T ss_dssp -TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS--
T ss_pred CCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCccc
Confidence 322222211100 00 000 112223333 1345556899999973 222 22222 1
Q ss_pred CCeeEEEEceeeec-------cCeeeeeccCCCCCCCCcceEEEEeeEecCCCCCCCCc--ccCceEEEEcceee
Q 016398 218 GSTAITISNNYMFH-------HNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPR--CRHGFFHIVNNIYT 283 (390)
Q Consensus 218 ~s~~ITISnn~f~~-------H~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~Pr--~r~G~~hvvNN~~~ 283 (390)
-..+-+|.+|+|.. ...++.+|.|.....+ -+.++.+|+| ++|.+-.=- ++-+.--+.||.|.
T Consensus 162 ~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlF-e~cdGE~EIISvKS~~N~ir~Ntf~ 233 (425)
T PF14592_consen 162 IANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLF-ERCDGEVEIISVKSSDNTIRNNTFR 233 (425)
T ss_dssp -----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-SSSEEEEEESBT-EEES-EEE
T ss_pred cccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchh-hhcCCceeEEEeecCCceEeccEEE
Confidence 23577999999984 4578888876543222 2678899999 566654321 12333344444444
No 6
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.15 E-value=5.9e-05 Score=78.76 Aligned_cols=150 Identities=21% Similarity=0.279 Sum_probs=91.0
Q ss_pred CeEEEEeeceEEEeCceEEeccCceEEecCcceEE---ecCCcEEEeccccEEEEceEEEeeccC-------CCc-----
Q 016398 106 PLWIIFDHDMVINLKQELVMNSYKTIDGRGFNVQM---SNGPCISIYNVSNIIIHNIYIHDCVPA-------GSA----- 170 (390)
Q Consensus 106 P~~IvF~~~g~I~l~~~L~i~snkTI~G~ga~i~I---~~G~gi~i~~~~NVIIrnL~i~~~~~~-------~~~----- 170 (390)
..||.|..- ..|.|...=||+|||..--- ..-..|++..++||.|++|++++.... ..-
T Consensus 104 ~~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l 177 (456)
T PLN03003 104 DQWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSL 177 (456)
T ss_pred cceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEE
Confidence 347777531 23555544588888753100 001124555566666666665433100 000
Q ss_pred eeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeEEEEceeeeccCeeeeeccCCCCC-CCCc
Q 016398 171 VVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFS-ADKN 249 (390)
Q Consensus 171 ~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~~H~k~~L~G~sd~~~-~d~~ 249 (390)
.|. .|. .....|||.+..++||+|.+|.++.+ |.+|.++.++++|+|+|+.+.. ..+.-+|+-.++. .+..
T Consensus 178 ~I~-ap~-----~spNTDGIDi~~S~nV~I~n~~I~tG-DDCIaiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V 249 (456)
T PLN03003 178 RIN-APE-----SSPNTDGIDVGASSNVVIQDCIIATG-DDCIAINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATV 249 (456)
T ss_pred EEe-CCC-----CCCCCCcEeecCcceEEEEecEEecC-CCeEEeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceE
Confidence 011 110 12467999999999999999999865 6677999999999999999864 3356788644322 2344
Q ss_pred ceEEEEeeEecCCCCCCCCccc
Q 016398 250 MQVTIAFNFFGDGLVQRMPRCR 271 (390)
Q Consensus 250 ~~vTi~~N~f~~n~~~R~Pr~r 271 (390)
.+|++.++.| .+. .+.=|++
T Consensus 250 ~NV~v~n~~~-~~T-~nGvRIK 269 (456)
T PLN03003 250 ENVCVQNCNF-RGT-MNGARIK 269 (456)
T ss_pred EEEEEEeeEE-ECC-CcEEEEE
Confidence 6899999999 453 3444554
No 7
>PLN02218 polygalacturonase ADPG
Probab=98.04 E-value=0.00018 Score=74.91 Aligned_cols=123 Identities=24% Similarity=0.263 Sum_probs=85.7
Q ss_pred EEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeEEEE
Q 016398 146 ISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITIS 225 (390)
Q Consensus 146 i~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~ITIS 225 (390)
|.+..++||.|+||+|.. |. .....|||.+..++||.|.+|.++.+ |.+|.++.++++|+|+
T Consensus 218 i~~~~~~nV~i~~v~I~a--~~---------------~spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I~ 279 (431)
T PLN02218 218 ISIEKCSNVQVSNVVVTA--PA---------------DSPNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQIN 279 (431)
T ss_pred EEEEceeeEEEEEEEEeC--CC---------------CCCCCCcEeecccceEEEEccEEecC-CceEEecCCCceEEEE
Confidence 445578899999998863 21 11467999999999999999999866 6688999999999999
Q ss_pred ceeeeccCeeeeeccCCCC-CCCCcceEEEEeeEecCCCCCCCCccc---CceEEEEcceeeCCcceE
Q 016398 226 NNYMFHHNEVMLMGHSDDF-SADKNMQVTIAFNFFGDGLVQRMPRCR---HGFFHIVNNIYTGWEMYA 289 (390)
Q Consensus 226 nn~f~~H~k~~L~G~sd~~-~~d~~~~vTi~~N~f~~n~~~R~Pr~r---~G~~hvvNN~~~~~~~ya 289 (390)
||.+.. ..+.-+|+-..+ ..+..-+|++.++.| .+. .+.=|++ .|.-.|-|=.|.+..|..
T Consensus 280 n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~-~~t-~nGvRIKT~~Gg~G~v~nI~f~ni~m~~ 344 (431)
T PLN02218 280 DITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKL-SGT-DNGVRIKTYQGGSGTASNIIFQNIQMEN 344 (431)
T ss_pred eEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEE-ecC-CcceEEeecCCCCeEEEEEEEEeEEEEc
Confidence 999963 335668874432 223345899999988 453 3444554 233444444555555443
No 8
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.97 E-value=0.00012 Score=63.12 Aligned_cols=133 Identities=28% Similarity=0.291 Sum_probs=84.0
Q ss_pred cEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeEEE
Q 016398 145 CISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITI 224 (390)
Q Consensus 145 gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~ITI 224 (390)
||.+....++.|++.+|++. ..++|.+.+...+.|+.|+|.+...|+ .+ .+..+++|
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~gi-~~-~~~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYGI-YV-SGGSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTSE-EE-ECCES-EE
T ss_pred EEEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcEE-EE-ecCCCeEE
Confidence 57888889999999999853 578899999999999999999944444 54 35589999
Q ss_pred EceeeeccCeeeeeccCCCCCCCCcceEEEEeeEecCCCCCCCCccc--CceEEEEcceeeCCcceEEecCC--CceEEE
Q 016398 225 SNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCR--HGFFHIVNNIYTGWEMYAIGGSA--NPTINS 300 (390)
Q Consensus 225 Snn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~Pr~r--~G~~hvvNN~~~~~~~yaigg~~--~~~i~~ 300 (390)
++|.|.+......+-.+. .+++.+|.|. ++..-.=.+. ...+.+.||.+.+-..+++.... .+++.+
T Consensus 59 ~~~~~~~~~~~i~~~~~~--------~~~i~~~~i~-~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGSS--------NITIENNRIE-NNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS-C--------S-EEES-EEE-CSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEecC--------CceecCcEEE-cCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 999999877444333222 5788899994 4332122222 34688999999876654443322 458999
Q ss_pred EecEEEcCC
Q 016398 301 QGNVFIASN 309 (390)
Q Consensus 301 egN~F~~~~ 309 (390)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 999998755
No 9
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.84 E-value=0.00066 Score=70.12 Aligned_cols=104 Identities=19% Similarity=0.230 Sum_probs=75.1
Q ss_pred EEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeEEEE
Q 016398 146 ISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITIS 225 (390)
Q Consensus 146 i~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~ITIS 225 (390)
|.+..++||.|++|+|.. |. .....|||.+..++||+|.+|.+..+.| +|.++.++++|+|+
T Consensus 181 i~~~~~~~v~i~~v~I~~--~~---------------~spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I~ 242 (404)
T PLN02188 181 IALVECRNFKGSGLKISA--PS---------------DSPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQVTIT 242 (404)
T ss_pred EEEEccccEEEEEEEEeC--CC---------------CCCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccEEEE
Confidence 445568888888888863 21 1146799999999999999999987766 77888899999999
Q ss_pred ceeeeccCeeeeeccCCCC-CCCCcceEEEEeeEecCCCCCCCCcc
Q 016398 226 NNYMFHHNEVMLMGHSDDF-SADKNMQVTIAFNFFGDGLVQRMPRC 270 (390)
Q Consensus 226 nn~f~~H~k~~L~G~sd~~-~~d~~~~vTi~~N~f~~n~~~R~Pr~ 270 (390)
|+.+.. ..++-+|+-..+ .....-.|++.++.|. ++ .+.=|+
T Consensus 243 n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~-~t-~~Giri 285 (404)
T PLN02188 243 RIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT-GT-TNGIRI 285 (404)
T ss_pred EEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE-CC-CcEEEE
Confidence 999853 345667873322 1223458999999993 43 344444
No 10
>PLN02793 Probable polygalacturonase
Probab=97.82 E-value=0.00049 Score=71.90 Aligned_cols=105 Identities=22% Similarity=0.209 Sum_probs=74.6
Q ss_pred EEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeEEEE
Q 016398 146 ISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITIS 225 (390)
Q Consensus 146 i~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~ITIS 225 (390)
|.+..++||.|++|+|.... .....|||.+..++||+|.+|.+.. .|.+|.++.++++|+|+
T Consensus 203 i~~~~~~nv~i~~l~I~~p~-----------------~spNTDGIdi~~s~nV~I~n~~I~~-gDDcIaik~~s~nI~I~ 264 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPA-----------------TSPNTDGIHISASRGVVIKDSIVRT-GDDCISIVGNSSRIKIR 264 (443)
T ss_pred EEEEccCcEEEEEEEEECCC-----------------CCCCCCcEeeeccceEEEEeCEEeC-CCCeEEecCCcCCEEEE
Confidence 44556788888888886411 1146799999999999999999884 56777888899999999
Q ss_pred ceeeeccCeeeeeccCCCC-CCCCcceEEEEeeEecCCCCCCCCccc
Q 016398 226 NNYMFHHNEVMLMGHSDDF-SADKNMQVTIAFNFFGDGLVQRMPRCR 271 (390)
Q Consensus 226 nn~f~~H~k~~L~G~sd~~-~~d~~~~vTi~~N~f~~n~~~R~Pr~r 271 (390)
|+.+.. ..+.-+|+-..+ +......|++.++.| .+. .+.=|++
T Consensus 265 n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~-~~t-~~GirIK 308 (443)
T PLN02793 265 NIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFL-SNT-DNGVRIK 308 (443)
T ss_pred EeEEeC-CccEEEecccCcCCCCcEEEEEEEccEE-eCC-CceEEEE
Confidence 999864 234668874322 222345899999988 453 3444543
No 11
>PLN02155 polygalacturonase
Probab=97.82 E-value=0.00041 Score=71.45 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=82.6
Q ss_pred EEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeEEEE
Q 016398 146 ISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITIS 225 (390)
Q Consensus 146 i~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~ITIS 225 (390)
|.+..++||.|++|+|.. |+ .....|||.+..++||+|.+|.+..+.| .|.++.++++|+|+
T Consensus 171 i~~~~~~nv~i~~v~I~~--p~---------------~~~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI~I~ 232 (394)
T PLN02155 171 MTLNGCTNVVVRNVKLVA--PG---------------NSPNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNFLIT 232 (394)
T ss_pred EEEECeeeEEEEEEEEEC--CC---------------CCCCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceEEEE
Confidence 445577888888888874 21 1146799999999999999999987766 77888899999999
Q ss_pred ceeeeccCeeeeeccCCCC-CCCCcceEEEEeeEecCCCCCCCCcccC----ceEEEEcceeeCCcc
Q 016398 226 NNYMFHHNEVMLMGHSDDF-SADKNMQVTIAFNFFGDGLVQRMPRCRH----GFFHIVNNIYTGWEM 287 (390)
Q Consensus 226 nn~f~~H~k~~L~G~sd~~-~~d~~~~vTi~~N~f~~n~~~R~Pr~r~----G~~hvvNN~~~~~~~ 287 (390)
++.+.. ..++-+|+-..+ +.....+|++.++.| .+. .+.=|++. +...|-|=.|.+..|
T Consensus 233 n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~-~~t-~~GirIKT~~~~~gG~v~nI~f~ni~m 296 (394)
T PLN02155 233 KLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVF-TGS-QNGVRIKSWARPSTGFVRNVFFQDLVM 296 (394)
T ss_pred EEEEEC-CceEEeccccccCCCCcEEEEEEEeeEE-eCC-CcEEEEEEecCCCCEEEEEEEEEeEEE
Confidence 999974 335678875332 233445899999999 443 34444421 123344444555443
No 12
>PLN03010 polygalacturonase
Probab=97.79 E-value=0.0022 Score=66.42 Aligned_cols=99 Identities=22% Similarity=0.157 Sum_probs=66.5
Q ss_pred CCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeEEEEceeeeccCeeeeeccCCCC-CCCCcceEEEEeeEecCCC
Q 016398 185 SDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDF-SADKNMQVTIAFNFFGDGL 263 (390)
Q Consensus 185 ~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~~H~k~~L~G~sd~~-~~d~~~~vTi~~N~f~~n~ 263 (390)
...|||.+..++||+|.+|.+..+ |.+|.++.++++++|.++.... ..+.-+|+-... +.+..-.|++.++.|. +.
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~-~t 281 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN-QT 281 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe-CC
Confidence 467999999999999999988876 7777998888888888777752 234567764332 2233458899999983 43
Q ss_pred CCCCCccc---CceEEEEcceeeCCcc
Q 016398 264 VQRMPRCR---HGFFHIVNNIYTGWEM 287 (390)
Q Consensus 264 ~~R~Pr~r---~G~~hvvNN~~~~~~~ 287 (390)
.+.=|++ .|.-.|-|=.|.+..+
T Consensus 282 -~~GirIKt~~G~~G~v~nItf~nI~m 307 (409)
T PLN03010 282 -TNGARIKTWQGGQGYARNISFENITL 307 (409)
T ss_pred -CcceEEEEecCCCEEEEEeEEEeEEE
Confidence 3444443 2333444444555443
No 13
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.72 E-value=0.0005 Score=68.86 Aligned_cols=124 Identities=23% Similarity=0.207 Sum_probs=82.5
Q ss_pred CCcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeE
Q 016398 143 GPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAI 222 (390)
Q Consensus 143 G~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~I 222 (390)
...+.+..++||.|++|+|+.... ....|||-+.+++||.|++|.+..+ |..|.++.++.+|
T Consensus 115 ~w~~~~~~~~nv~i~~i~I~~~~~-----------------~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni 176 (326)
T PF00295_consen 115 FWHIHINDCDNVTISNITINNPAN-----------------SPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNI 176 (326)
T ss_dssp SESEEEESEEEEEEESEEEEEGGG-----------------CTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEE
T ss_pred eeEEEEEccCCeEEcceEEEecCC-----------------CCCcceEEEEeeeEEEEEEeecccc-cCcccccccccce
Confidence 345777789999999999986421 1467999999999999999999766 6677888777899
Q ss_pred EEEceeeeccCeeeeeccCCCCC-CCCcceEEEEeeEecCCCCCCCCccc---CceEEEEcceeeCCcc
Q 016398 223 TISNNYMFHHNEVMLMGHSDDFS-ADKNMQVTIAFNFFGDGLVQRMPRCR---HGFFHIVNNIYTGWEM 287 (390)
Q Consensus 223 TISnn~f~~H~k~~L~G~sd~~~-~d~~~~vTi~~N~f~~n~~~R~Pr~r---~G~~hvvNN~~~~~~~ 287 (390)
+|+||.|.. ..++-+|+..... ....-+|++.++.| .+. .|.-|++ .+...|-|=.|++..+
T Consensus 177 ~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i-~~t-~~gi~iKt~~~~~G~v~nI~f~ni~~ 242 (326)
T PF00295_consen 177 LVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTI-INT-DNGIRIKTWPGGGGYVSNITFENITM 242 (326)
T ss_dssp EEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEE-ESE-SEEEEEEEETTTSEEEEEEEEEEEEE
T ss_pred EEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEe-ecc-ceEEEEEEecccceEEeceEEEEEEe
Confidence 999999974 3346677533221 11134789999988 453 3544443 2223333434444443
No 14
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.68 E-value=0.0025 Score=66.26 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=72.9
Q ss_pred hHHHhhhCCC-C-eEEEEeeceEEEeCceEEeccCceEEecCcce--EEecCCcEE-EeccccEEEEceEEEeeccCCCc
Q 016398 96 SLRYAVIQEE-P-LWIIFDHDMVINLKQELVMNSYKTIDGRGFNV--QMSNGPCIS-IYNVSNIIIHNIYIHDCVPAGSA 170 (390)
Q Consensus 96 sLr~av~~~~-P-~~IvF~~~g~I~l~~~L~i~snkTI~G~ga~i--~I~~G~gi~-i~~~~NVIIrnL~i~~~~~~~~~ 170 (390)
.|+.|+.+-. | -.|++... + .+...|.+.+++||.|+.... .|.++.++. -..++||-|++|+|++. +
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~G-~-Y~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs--G--- 128 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPPG-V-YRTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG--G--- 128 (455)
T ss_pred HHHHHHHHhhcCCCEEEECCC-c-eecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC--C---
Confidence 3888876522 2 33555443 2 123678899999999985432 344333332 23799999999999852 1
Q ss_pred eeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccc-cCeEEeeeCCeeEEEEceeee
Q 016398 171 VVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCY-DGLIDIVYGSTAITISNNYMF 230 (390)
Q Consensus 171 ~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~-Dglidi~~~s~~ITISnn~f~ 230 (390)
.......-+|.+.+++++-|.+|.|.... .|. .+ +++. ..|++|.+.
T Consensus 129 ----------~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI-~L-~~~~-~~I~~N~I~ 176 (455)
T TIGR03808 129 ----------IPLPQRRGLIHCQGGRDVRITDCEITGSGGNGI-WL-ETVS-GDISGNTIT 176 (455)
T ss_pred ----------CcccCCCCEEEEccCCceEEEeeEEEcCCcceE-EE-EcCc-ceEecceEe
Confidence 11123455889989999999999999884 665 33 3344 555555554
No 15
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.61 E-value=0.0055 Score=62.67 Aligned_cols=185 Identities=14% Similarity=0.184 Sum_probs=134.2
Q ss_pred eEEEecCCCCCCCCCCchhHHHhhhCCCCeEEEEeeceEEEeCceEEeccCceEEecCcceEEe--cCCcEEE-------
Q 016398 78 EIYIVKSKDDDPVDPIPGSLRYAVIQEEPLWIIFDHDMVINLKQELVMNSYKTIDGRGFNVQMS--NGPCISI------- 148 (390)
Q Consensus 78 ~v~~VT~~~d~~~~~~pGsLr~av~~~~P~~IvF~~~g~I~l~~~L~i~snkTI~G~ga~i~I~--~G~gi~i------- 148 (390)
+.|.+-..+| |-.|+.+-. -|..+.+-+-+++++|.|.+-.+|+|+||-|.|. ++.+|++
T Consensus 47 kt~~~~P~eD---------le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P 115 (386)
T PF01696_consen 47 KTYWMEPGED---------LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGP 115 (386)
T ss_pred EEEEcCCCcC---------HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCC
Confidence 4577777776 887776543 3666777777888999999999999999998874 2334543
Q ss_pred --eccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeEEEEc
Q 016398 149 --YNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISN 226 (390)
Q Consensus 149 --~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISn 226 (390)
.+-.+|.+.|++|..- ..--++-+...+++.|--|+|....-=.|+.. ....|.-
T Consensus 116 ~V~gM~~VtF~ni~F~~~--------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrG 172 (386)
T PF01696_consen 116 GVVGMEGVTFVNIRFEGR--------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRG 172 (386)
T ss_pred eEeeeeeeEEEEEEEecC--------------------CccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEee
Confidence 3567888999988731 12457778889999999999999887777764 4678999
Q ss_pred eeeeccCeeeeeccCCCCCCCCcceEEEEeeEecCCCCCCCCcccCceEEEEcceeeCCcceEEecCCCceEEEEecEEE
Q 016398 227 NYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVFI 306 (390)
Q Consensus 227 n~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~Pr~r~G~~hvvNN~~~~~~~yaigg~~~~~i~~egN~F~ 306 (390)
|+|..-+++.... + +.++++.+|.| +.+.=- -+-.|..++.+|...+-.-..+- ..+-.+.+|.|.
T Consensus 173 C~F~~C~~gi~~~-~-------~~~lsVk~C~F-ekC~ig--i~s~G~~~i~hn~~~ec~Cf~l~---~g~g~i~~N~v~ 238 (386)
T PF01696_consen 173 CTFYGCWKGIVSR-G-------KSKLSVKKCVF-EKCVIG--IVSEGPARIRHNCASECGCFVLM---KGTGSIKHNMVC 238 (386)
T ss_pred eEEEEEEEEeecC-C-------cceEEeeheee-eheEEE--EEecCCeEEecceecccceEEEE---cccEEEeccEEe
Confidence 9998877776332 1 23788899999 444321 23468899999999876543332 224578899999
Q ss_pred cCCC
Q 016398 307 ASND 310 (390)
Q Consensus 307 ~~~~ 310 (390)
.+..
T Consensus 239 ~~~~ 242 (386)
T PF01696_consen 239 GPND 242 (386)
T ss_pred CCCC
Confidence 8776
No 16
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.57 E-value=0.0045 Score=61.87 Aligned_cols=163 Identities=14% Similarity=0.137 Sum_probs=94.6
Q ss_pred EEec-cCceEEecCcceEEecCCcEEEeccccEEEEceEEEeec-----cCCCceee-CCCCC--CCCCC-CCCCCeEEE
Q 016398 123 LVMN-SYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCV-----PAGSAVVR-DSPKH--YGPRG-RSDGDGISI 192 (390)
Q Consensus 123 L~i~-snkTI~G~ga~i~I~~G~gi~i~~~~NVIIrnL~i~~~~-----~~~~~~i~-~~~~~--~g~~~-~~~~DaIsi 192 (390)
+.+. +++||.|.+- .=..+.+|.+++++|++|+++++.... .++.|... .+.+- .+.+- ...++||.+
T Consensus 58 i~v~a~~VtI~~ltI--~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv 135 (314)
T TIGR03805 58 LLVTSDDVTLSDLAV--ENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV 135 (314)
T ss_pred EEEEeCCeEEEeeEE--EcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE
Confidence 4443 6777776531 111245677778888888888875211 00111110 00000 00000 123458999
Q ss_pred eCCccEEEEeeEEeccccCeEEeeeCCeeEEEEceeeeccCeeeeeccCCCCCCCCcceEEEEeeEecCCCCCCC-----
Q 016398 193 FGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRM----- 267 (390)
Q Consensus 193 ~gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~----- 267 (390)
..++++.|-+|.+.....|+ -+ ..|.+++|.+|.|.+-.-+.++-..+....-...++.+++|.|..+ ....
T Consensus 136 ~~s~~~~v~nN~~~~n~~GI-~i-~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n-~~~n~~~~g 212 (314)
T TIGR03805 136 GQSQNIVVRNNVAEENVAGI-EI-ENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN-NTPNFAPAG 212 (314)
T ss_pred CCCCCeEEECCEEccCcceE-EE-EecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC-CCCCCcccC
Confidence 99999999999999888775 33 3578999999999976666666322211111123899999999544 2221
Q ss_pred ------Cccc------CceEEEEcceeeCCcceEE
Q 016398 268 ------PRCR------HGFFHIVNNIYTGWEMYAI 290 (390)
Q Consensus 268 ------Pr~r------~G~~hvvNN~~~~~~~yai 290 (390)
|.-+ .-.+.|+||.+.+-...++
T Consensus 213 n~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i 247 (314)
T TIGR03805 213 SIVASVPAGTGVVVMANRDVEIFGNVISNNDTANV 247 (314)
T ss_pred CceecCCCCcEEEEEcccceEEECCEEeCCcceeE
Confidence 1111 1247999999987655444
No 17
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.52 E-value=0.0013 Score=56.51 Aligned_cols=131 Identities=25% Similarity=0.216 Sum_probs=75.5
Q ss_pred CCcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeE
Q 016398 143 GPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAI 222 (390)
Q Consensus 143 G~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~I 222 (390)
+.+|.+...+++.|++-+|++ ...+|.+.+..++.|+.|.|+.+. ..+.+. .+..+
T Consensus 23 ~~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~-~~~~~ 78 (158)
T PF13229_consen 23 GDGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYVS-GSSNI 78 (158)
T ss_dssp SECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEECC-S-CS-
T ss_pred CeEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEEE-ecCCc
Confidence 446777677777888888873 356788888899999999999888 444543 77899
Q ss_pred EEEceeeeccCe-eeeeccCCCCCCCCcceEEEEeeEecCCCCCCCCccc-Cc--eEEEEcceeeCCcceEEecCCCce-
Q 016398 223 TISNNYMFHHNE-VMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCR-HG--FFHIVNNIYTGWEMYAIGGSANPT- 297 (390)
Q Consensus 223 TISnn~f~~H~k-~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~Pr~r-~G--~~hvvNN~~~~~~~yaigg~~~~~- 297 (390)
+|++|.|.+... ++.+.. ....+++.+|.|. +..+..=.+. .. .+-+.||.+++...+++.......
T Consensus 79 ~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~-~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~ 150 (158)
T PF13229_consen 79 TIENNRIENNGDYGIYISN-------SSSNVTIENNTIH-NNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSN 150 (158)
T ss_dssp EEES-EEECSSS-SCE-TC-------EECS-EEES-EEE-CCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS-
T ss_pred eecCcEEEcCCCccEEEec-------cCCCEEEEeEEEE-eCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCe
Confidence 999999987544 444432 0125788899884 3221111111 22 577788888887778875554444
Q ss_pred EEEEecEE
Q 016398 298 INSQGNVF 305 (390)
Q Consensus 298 i~~egN~F 305 (390)
+.+.+|.|
T Consensus 151 ~~v~~n~~ 158 (158)
T PF13229_consen 151 CTVTNNTF 158 (158)
T ss_dssp -EEES-E-
T ss_pred EEEECCCC
Confidence 88888876
No 18
>PLN02218 polygalacturonase ADPG
Probab=97.51 E-value=0.0062 Score=63.54 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=88.4
Q ss_pred EEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEec-----cccCeEEeeeCCe
Q 016398 146 ISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSH-----CYDGLIDIVYGST 220 (390)
Q Consensus 146 i~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~-----~~Dglidi~~~s~ 220 (390)
|++.+++|+.|++|+|++. ..=.|.+..++||.|++.++.. -.||. |+ ..++
T Consensus 195 i~f~~~~nv~I~gitl~nS---------------------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDGI-di-~ss~ 251 (431)
T PLN02218 195 LTFYNSKSLIVKNLRVRNA---------------------QQIQISIEKCSNVQVSNVVVTAPADSPNTDGI-HI-TNTQ 251 (431)
T ss_pred EEEEccccEEEeCeEEEcC---------------------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCcE-ee-cccc
Confidence 6788999999999999964 2235888899999999999875 35665 85 5789
Q ss_pred eEEEEceeeeccCeeeeeccCCCCCCCCcceEEEEeeEecCCCC------CCCCcc-cCceEEEEcceeeCCcceEE---
Q 016398 221 AITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLV------QRMPRC-RHGFFHIVNNIYTGWEMYAI--- 290 (390)
Q Consensus 221 ~ITISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~------~R~Pr~-r~G~~hvvNN~~~~~~~yai--- 290 (390)
+|+|++|.|...|.+.-+.+.. .+|++.++.++.+.. .+.+.- ..-.++|-|+.+.+-. +++
T Consensus 252 nV~I~n~~I~tGDDcIaIksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIK 323 (431)
T PLN02218 252 NIRVSNSIIGTGDDCISIESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIK 323 (431)
T ss_pred eEEEEccEEecCCceEEecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEEe
Confidence 9999999999888777776532 268888777743211 000000 0013666666665432 222
Q ss_pred ----ecCCCceEEEEecEEEcCCCC
Q 016398 291 ----GGSANPTINSQGNVFIASNDE 311 (390)
Q Consensus 291 ----gg~~~~~i~~egN~F~~~~~~ 311 (390)
+++.-..|.+++...+....+
T Consensus 324 T~~Gg~G~v~nI~f~ni~m~~V~~p 348 (431)
T PLN02218 324 TYQGGSGTASNIIFQNIQMENVKNP 348 (431)
T ss_pred ecCCCCeEEEEEEEEeEEEEccccc
Confidence 112223567777777765543
No 19
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.34 E-value=0.0082 Score=55.06 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=27.8
Q ss_pred HHHhh--h-CCCCeEEEEeeceEEEeCceEEeccCceEEecCc
Q 016398 97 LRYAV--I-QEEPLWIIFDHDMVINLKQELVMNSYKTIDGRGF 136 (390)
Q Consensus 97 Lr~av--~-~~~P~~IvF~~~g~I~l~~~L~i~snkTI~G~ga 136 (390)
|..|+ . ..+..+|.| ..|+-.++++|.+.+++||.|.|.
T Consensus 21 iq~Ai~~~~~~~g~~v~~-P~G~Y~i~~~l~~~s~v~l~G~g~ 62 (225)
T PF12708_consen 21 IQAAIDAAAAAGGGVVYF-PPGTYRISGTLIIPSNVTLRGAGG 62 (225)
T ss_dssp HHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESST
T ss_pred HHHhhhhcccCCCeEEEE-cCcEEEEeCCeEcCCCeEEEccCC
Confidence 88888 3 345566665 567888888899999999999876
No 20
>PLN02155 polygalacturonase
Probab=97.28 E-value=0.01 Score=61.21 Aligned_cols=132 Identities=15% Similarity=0.241 Sum_probs=88.3
Q ss_pred eEEeccCceEEecCcceEEe--cC-------CcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEE
Q 016398 122 ELVMNSYKTIDGRGFNVQMS--NG-------PCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISI 192 (390)
Q Consensus 122 ~L~i~snkTI~G~ga~i~I~--~G-------~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi 192 (390)
.+.|.. =||+|||..---. .+ ..|++..++||.|++|++++. ..=.|.+
T Consensus 116 ~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS---------------------p~w~i~~ 173 (394)
T PLN02155 116 RFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS---------------------QVSHMTL 173 (394)
T ss_pred CCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC---------------------CCeEEEE
Confidence 455554 6899998641100 01 237788999999999999864 1234778
Q ss_pred eCCccEEEEeeEEec-----cccCeEEeeeCCeeEEEEceeeeccCeeeeeccCCCCCCCCcceEEEEeeEecCCC----
Q 016398 193 FGSRDIWIDHCTFSH-----CYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGL---- 263 (390)
Q Consensus 193 ~gs~nVWIDHcs~s~-----~~Dglidi~~~s~~ITISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~---- 263 (390)
.+++||.|+|.++.. -.||. |+ ..+++|+|++|.|...|.+..+++.- -+|++.++.+..+.
T Consensus 174 ~~~~nv~i~~v~I~~p~~~~NtDGi-di-~~s~nV~I~~~~I~~gDDcIaik~gs-------~nI~I~n~~c~~GhGisI 244 (394)
T PLN02155 174 NGCTNVVVRNVKLVAPGNSPNTDGF-HV-QFSTGVTFTGSTVQTGDDCVAIGPGT-------RNFLITKLACGPGHGVSI 244 (394)
T ss_pred ECeeeEEEEEEEEECCCCCCCCCcc-cc-ccceeEEEEeeEEecCCceEEcCCCC-------ceEEEEEEEEECCceEEe
Confidence 899999999999965 34765 75 56899999999999988888887542 16777777664211
Q ss_pred --CCCCC-cccCceEEEEcceeeC
Q 016398 264 --VQRMP-RCRHGFFHIVNNIYTG 284 (390)
Q Consensus 264 --~~R~P-r~r~G~~hvvNN~~~~ 284 (390)
..+.+ .-..-.+.|.|+.+.+
T Consensus 245 GS~g~~~~~~~V~nV~v~n~~~~~ 268 (394)
T PLN02155 245 GSLAKELNEDGVENVTVSSSVFTG 268 (394)
T ss_pred ccccccCCCCcEEEEEEEeeEEeC
Confidence 11111 0011246777887765
No 21
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.23 E-value=0.0097 Score=62.01 Aligned_cols=159 Identities=17% Similarity=0.139 Sum_probs=91.4
Q ss_pred CceEEecCcceEEecCCcEEEeccccEEEEceEEEeec-c-----CCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEE
Q 016398 128 YKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCV-P-----AGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWID 201 (390)
Q Consensus 128 nkTI~G~ga~i~I~~G~gi~i~~~~NVIIrnL~i~~~~-~-----~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWID 201 (390)
.+||+|.|.+..-. -.+|.++.++++.|++.+|++.- - +....|.+.. -.+ ....+|.++.++++.|.
T Consensus 121 GLtIdGsG~dl~~r-dAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~-I~g----~~~~~I~lw~S~g~~V~ 194 (455)
T TIGR03808 121 GLTLDGGGIPLPQR-RGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNT-ITQ----IAVTAIVSFDALGLIVA 194 (455)
T ss_pred eeEEEeCCCcccCC-CCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecce-Eec----cccceEEEeccCCCEEE
Confidence 44666666543222 23688889999999999998751 0 0011111110 011 23345888899999999
Q ss_pred eeEEeccccCeEEeee-----------------------------------CCeeEEEEceeeeccCeeeeeccCCCCCC
Q 016398 202 HCTFSHCYDGLIDIVY-----------------------------------GSTAITISNNYMFHHNEVMLMGHSDDFSA 246 (390)
Q Consensus 202 Hcs~s~~~Dglidi~~-----------------------------------~s~~ITISnn~f~~H~k~~L~G~sd~~~~ 246 (390)
+++++.+.|+.|-+.+ .+.+++|+.|.++++.+--+.+.+.+
T Consensus 195 ~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss--- 271 (455)
T TIGR03808 195 RNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSAS--- 271 (455)
T ss_pred CCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEccc---
Confidence 9999999886554431 35688888888888774444443222
Q ss_pred CCcceEEEEeeEecCCCCCCCCcccC-c-------e-EEEEcceeeCC-cceEEec-CCCceE-EEEecEEEc
Q 016398 247 DKNMQVTIAFNFFGDGLVQRMPRCRH-G-------F-FHIVNNIYTGW-EMYAIGG-SANPTI-NSQGNVFIA 307 (390)
Q Consensus 247 d~~~~vTi~~N~f~~n~~~R~Pr~r~-G-------~-~hvvNN~~~~~-~~yaigg-~~~~~i-~~egN~F~~ 307 (390)
++.|..|.| + ++|+ + . ..+.||.++.. ..|++-- .++.++ .++||...+
T Consensus 272 ----~~~i~~N~~-~-------~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn 332 (455)
T TIGR03808 272 ----NIQITGNSV-S-------DVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRN 332 (455)
T ss_pred ----CcEEECcEe-e-------eeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeec
Confidence 344555555 2 2233 2 1 23566766543 3465532 233333 556777665
No 22
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.21 E-value=0.0063 Score=57.46 Aligned_cols=129 Identities=25% Similarity=0.147 Sum_probs=93.1
Q ss_pred CcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeEE
Q 016398 144 PCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAIT 223 (390)
Q Consensus 144 ~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~IT 223 (390)
.++.+..++++.|++.+|++ ...||.+..++++-|..|.++.+..|. .+ ..+.+.+
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~----------------------~~~GI~~~~s~~~~i~~n~i~~n~~Gi-~l-~~s~~~~ 91 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISN----------------------NRYGIHLMGSSNNTIENNTISNNGYGI-YL-MGSSNNT 91 (236)
T ss_pred CEEEEEEcCCeEEEeeEEEC----------------------CCeEEEEEccCCCEEEeEEEEccCCCE-EE-EcCCCcE
Confidence 35666688899999998874 257799999999999999999999776 43 3445559
Q ss_pred EEceeeeccCeeeeeccCCCCCCCCcceEEEEeeEecCCCCCCCCccc-CceEEEEcceeeCCcceEEe-cCCCceEEEE
Q 016398 224 ISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCR-HGFFHIVNNIYTGWEMYAIG-GSANPTINSQ 301 (390)
Q Consensus 224 ISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~Pr~r-~G~~hvvNN~~~~~~~yaig-g~~~~~i~~e 301 (390)
|++|.|.+...+.++-.+. ..++..|.|. +.. .--.+. .....|.+|.+.+-..|++. ......-.+.
T Consensus 92 I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i~-~~~-~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~ 161 (236)
T PF05048_consen 92 ISNNTISNNGYGIYLYGSS--------NNTISNNTIS-NNG-YGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIY 161 (236)
T ss_pred EECCEecCCCceEEEeeCC--------ceEEECcEEe-CCC-EEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEE
Confidence 9999999766666654433 3678888884 322 222222 24678899999887667776 5555667888
Q ss_pred ecEEE
Q 016398 302 GNVFI 306 (390)
Q Consensus 302 gN~F~ 306 (390)
+|+|.
T Consensus 162 ~N~f~ 166 (236)
T PF05048_consen 162 NNNFN 166 (236)
T ss_pred CCCcc
Confidence 99993
No 23
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.11 E-value=0.021 Score=53.88 Aligned_cols=121 Identities=28% Similarity=0.258 Sum_probs=85.7
Q ss_pred cCceEEecCcceEEec-CCcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEE
Q 016398 127 SYKTIDGRGFNVQMSN-GPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTF 205 (390)
Q Consensus 127 snkTI~G~ga~i~I~~-G~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~ 205 (390)
.+.||.+-. |.+ ..||.+..++++.|++-.|++. ..||.+..+.+..|..+.|
T Consensus 44 ~~~~I~~n~----i~~~~~GI~~~~s~~~~i~~n~i~~n----------------------~~Gi~l~~s~~~~I~~N~i 97 (236)
T PF05048_consen 44 DNNTISNNT----ISNNRYGIHLMGSSNNTIENNTISNN----------------------GYGIYLMGSSNNTISNNTI 97 (236)
T ss_pred CCeEEEeeE----EECCCeEEEEEccCCCEEEeEEEEcc----------------------CCCEEEEcCCCcEEECCEe
Confidence 455555542 222 2368888889999999998842 2889999988889999999
Q ss_pred eccccCeEEeeeCCeeEEEEceeeeccCeeeeeccCCCCCCCCcceEEEEeeEecCCCCCCCCc-cc-CceEEEEcceee
Q 016398 206 SHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPR-CR-HGFFHIVNNIYT 283 (390)
Q Consensus 206 s~~~Dglidi~~~s~~ITISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~Pr-~r-~G~~hvvNN~~~ 283 (390)
+....|. -+ ..+...||++|.|.+...++.+-.+. +.++.+|.|..+ ..---. +. .....+++|.|.
T Consensus 98 ~~n~~GI-~l-~~s~~~~I~~N~i~~~~~GI~l~~s~--------~n~I~~N~i~~n-~~~Gi~~~~~s~~n~I~~N~f~ 166 (236)
T PF05048_consen 98 SNNGYGI-YL-YGSSNNTISNNTISNNGYGIYLSSSS--------NNTITGNTISNN-TDYGIYFLSGSSGNTIYNNNFN 166 (236)
T ss_pred cCCCceE-EE-eeCCceEEECcEEeCCCEEEEEEeCC--------CCEEECeEEeCC-CccceEEeccCCCCEEECCCcc
Confidence 9999965 43 46788999999999777777775442 568889999543 111112 12 345789999994
Q ss_pred C
Q 016398 284 G 284 (390)
Q Consensus 284 ~ 284 (390)
+
T Consensus 167 N 167 (236)
T PF05048_consen 167 N 167 (236)
T ss_pred C
Confidence 3
No 24
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.03 E-value=0.017 Score=57.89 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=75.8
Q ss_pred eEEeccCceEEecCcceE-Ee---------cCCcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEE
Q 016398 122 ELVMNSYKTIDGRGFNVQ-MS---------NGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGIS 191 (390)
Q Consensus 122 ~L~i~snkTI~G~ga~i~-I~---------~G~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIs 191 (390)
.+.+.-.=||+|+|..-. .. .-..|++.+++|+.|++|+|++.. .=.+.
T Consensus 61 ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp---------------------~w~~~ 119 (326)
T PF00295_consen 61 NITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP---------------------FWHIH 119 (326)
T ss_dssp EEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S---------------------SESEE
T ss_pred EEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC---------------------eeEEE
Confidence 345554569999987300 00 012378888999999999999641 12488
Q ss_pred EeCCccEEEEeeEEecc-----ccCeEEeeeCCeeEEEEceeeeccCeeeeeccCCCCCCCCcceEEEEeeEec
Q 016398 192 IFGSRDIWIDHCTFSHC-----YDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFG 260 (390)
Q Consensus 192 i~gs~nVWIDHcs~s~~-----~Dglidi~~~s~~ITISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~ 260 (390)
+..++||.|+|.++... .||. |+ ..+++|+|.+|.|...|.+.-+.+... .|++.+++|.
T Consensus 120 ~~~~~nv~i~~i~I~~~~~~~NtDGi-d~-~~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 120 INDCDNVTISNITINNPANSPNTDGI-DI-DSSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp EESEEEEEEESEEEEEGGGCTS--SE-EE-ESEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EEccCCeEEcceEEEecCCCCCcceE-EE-EeeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 88999999999999753 5776 75 478999999999998887777754321 6888888884
No 25
>PLN02197 pectinesterase
Probab=96.99 E-value=0.011 Score=63.93 Aligned_cols=136 Identities=22% Similarity=0.313 Sum_probs=84.5
Q ss_pred Ccchhh--hhcccccCCccccCCCcCCCCCeE---EEecCCCCCCCCCCch---hHHHhhhC----CCCeEEEEeeceEE
Q 016398 50 DSEWES--NRKALADCAVGFGRNAVGGRDGEI---YIVKSKDDDPVDPIPG---SLRYAVIQ----EEPLWIIFDHDMVI 117 (390)
Q Consensus 50 ~~~w~~--~~~~la~~a~GfG~~ttGG~gG~v---~~VT~~~d~~~~~~pG---sLr~av~~----~~P~~IvF~~~g~I 117 (390)
.|.|-. +|+-|+ +.+.|.++-||.++.+ ++|- .| |.| |+.+||.. ...|+|||=..|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa---~d----GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv- 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVA---KD----GSGQFKTISQAVMACPDKNPGRCIIHIKAGI- 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEc---CC----CCCCcCCHHHHHHhccccCCceEEEEEeCce-
Confidence 588974 455554 3445667777776643 3333 11 344 78888854 3345666556665
Q ss_pred EeCceEEec---cCceEEecCcceEEe---------cCC------cEEEeccccEEEEceEEEeeccCCCceeeCCCCCC
Q 016398 118 NLKQELVMN---SYKTIDGRGFNVQMS---------NGP------CISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHY 179 (390)
Q Consensus 118 ~l~~~L~i~---snkTI~G~ga~i~I~---------~G~------gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~ 179 (390)
.++.+.|. +|+||.|.|..-+|+ +|. .+.+ .+++++.+||.|++-.. +
T Consensus 314 -Y~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag--~---------- 379 (588)
T PLN02197 314 -YNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAG--P---------- 379 (588)
T ss_pred -EEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCC--C----------
Confidence 44566674 699999998753332 121 1334 57999999999997531 0
Q ss_pred CCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEE
Q 016398 180 GPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLID 214 (390)
Q Consensus 180 g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglid 214 (390)
...-|+-++ .++..-+.+|.|.-..|=|.+
T Consensus 380 -----~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~ 410 (588)
T PLN02197 380 -----MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYV 410 (588)
T ss_pred -----CCCceEEEEecCCcEEEEEeEEEecCcceEe
Confidence 123455554 478888999999877666543
No 26
>PLN02480 Probable pectinesterase
Probab=96.98 E-value=0.022 Score=57.79 Aligned_cols=119 Identities=16% Similarity=0.293 Sum_probs=76.4
Q ss_pred hhHHHhhhC----CCCeEEEEeeceEEEeCceEEe---ccCceEEecCcc-eEEec---------CCcEEEeccccEEEE
Q 016398 95 GSLRYAVIQ----EEPLWIIFDHDMVINLKQELVM---NSYKTIDGRGFN-VQMSN---------GPCISIYNVSNIIIH 157 (390)
Q Consensus 95 GsLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~-i~I~~---------G~gi~i~~~~NVIIr 157 (390)
-|+.+||.+ +..+++||=..|+ .++.|.| .+|+||.|.+.. ..|.+ +..|+| .+++++++
T Consensus 61 ~TIQ~AIdaap~~~~~~~~I~Ik~Gv--Y~E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~ 137 (343)
T PLN02480 61 TSVQSAIDAVPVGNSEWIIVHLRKGV--YREKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAF 137 (343)
T ss_pred ccHHHHHhhCccCCCceEEEEEcCcE--EEEEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEE
Confidence 378888854 2235555545554 3466777 478999998854 33432 224667 67999999
Q ss_pred ceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEEeeeCCeeEEEEceeeec
Q 016398 158 NIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFH 231 (390)
Q Consensus 158 nL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~~ 231 (390)
||+|++..+.+. ....+.-|+-+. .++++.+.+|.|.-..|=|.+- ...--+.+|+++.
T Consensus 138 nLTf~Nta~~g~------------~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C~IeG 197 (343)
T PLN02480 138 GISIRNDAPTGM------------AFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY---KGRHYYHSCYIQG 197 (343)
T ss_pred eeEEEecCCCCC------------CCCCCCceEEEEecCCcEEEEeeEEecccceeEeC---CCCEEEEeCEEEe
Confidence 999998643211 011345566664 6899999999999888877652 2244555666654
No 27
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.96 E-value=0.046 Score=53.06 Aligned_cols=190 Identities=20% Similarity=0.210 Sum_probs=107.4
Q ss_pred hhHHHhhhCCCCeEEEEeeceEEEeC----ceEEeccCceEEecCcc-----eEEec--------CCc-------EEEec
Q 016398 95 GSLRYAVIQEEPLWIIFDHDMVINLK----QELVMNSYKTIDGRGFN-----VQMSN--------GPC-------ISIYN 150 (390)
Q Consensus 95 GsLr~av~~~~P~~IvF~~~g~I~l~----~~L~i~snkTI~G~ga~-----i~I~~--------G~g-------i~i~~ 150 (390)
-||..|+.+-.|-.+|.=..|+-.-. -+|.+.+.+||.|..+. +.+.+ |.+ ++|..
T Consensus 16 ~Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~ 95 (246)
T PF07602_consen 16 KTITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIIL 95 (246)
T ss_pred HHHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEe
Confidence 47888887655544333344544432 25888889999885331 22221 211 44555
Q ss_pred cccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEecc-ccCeEEeee-----CCeeEEE
Q 016398 151 VSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHC-YDGLIDIVY-----GSTAITI 224 (390)
Q Consensus 151 ~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~-~Dglidi~~-----~s~~ITI 224 (390)
.++..|++++|++..+ ..+-||.|.++ +.-|..|+|+.+ .+|. .+.. ....++|
T Consensus 96 ~~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI-~v~g~~~~~~i~~~vI 155 (246)
T PF07602_consen 96 ANNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGI-FVTGTSANPGINGNVI 155 (246)
T ss_pred cCCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccE-EEEeeecCCcccceEe
Confidence 7788888888886321 35678999877 888999999997 4554 3222 3356778
Q ss_pred EceeeeccCeeeeeccCCCCCCCCcceEEEEeeEecCCC-----CCCCCcccCc-eEEEEcceeeCCcceEEecCC--Cc
Q 016398 225 SNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGL-----VQRMPRCRHG-FFHIVNNIYTGWEMYAIGGSA--NP 296 (390)
Q Consensus 225 Snn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~-----~~R~Pr~r~G-~~hvvNN~~~~~~~yaigg~~--~~ 296 (390)
+.|.+.....+.-+- ++... ....+-+|++.+|. ....|.+..+ ...+-||.+.+.+.|.+.-.. .-
T Consensus 156 ~GN~~~~~~~Gi~i~--~~~~~---~~n~I~NN~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~ 230 (246)
T PF07602_consen 156 SGNSIYFNKTGISIS--DNAAP---VENKIENNIIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQ 230 (246)
T ss_pred ecceEEecCcCeEEE--cccCC---ccceeeccEEEeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCce
Confidence 888776433322221 11111 01233445553221 1111444331 334667888887777776533 34
Q ss_pred eEEEEecEEEcCC
Q 016398 297 TINSQGNVFIASN 309 (390)
Q Consensus 297 ~i~~egN~F~~~~ 309 (390)
++++.||....-|
T Consensus 231 ~l~a~gN~ld~~p 243 (246)
T PF07602_consen 231 TLYAVGNQLDHNP 243 (246)
T ss_pred eEEEeCCccCCCC
Confidence 7888888765433
No 28
>PLN03010 polygalacturonase
Probab=96.89 E-value=0.016 Score=60.13 Aligned_cols=73 Identities=23% Similarity=0.262 Sum_probs=60.2
Q ss_pred EEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEec-----cccCeEEeeeCCe
Q 016398 146 ISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSH-----CYDGLIDIVYGST 220 (390)
Q Consensus 146 i~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~-----~~Dglidi~~~s~ 220 (390)
|++.+++||.|++|++++. ..=.|.+.++++|.|++..+.. -.||. |+ ..++
T Consensus 160 l~~~~~~nv~v~gitl~ns---------------------p~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGi-Di-~~s~ 216 (409)
T PLN03010 160 LHISKCDNLTINGITSIDS---------------------PKNHISIKTCNYVAISKINILAPETSPNTDGI-DI-SYST 216 (409)
T ss_pred EEEEeecCeEEeeeEEEcC---------------------CceEEEEeccccEEEEEEEEeCCCCCCCCCce-ee-eccc
Confidence 7788999999999999964 1234888899999999999875 45776 75 5789
Q ss_pred eEEEEceeeeccCeeeeeccC
Q 016398 221 AITISNNYMFHHNEVMLMGHS 241 (390)
Q Consensus 221 ~ITISnn~f~~H~k~~L~G~s 241 (390)
+|+|++|.+...|.+.-+.+.
T Consensus 217 nV~I~n~~I~~gDDcIaiksg 237 (409)
T PLN03010 217 NINIFDSTIQTGDDCIAINSG 237 (409)
T ss_pred eEEEEeeEEecCCCeEEecCC
Confidence 999999999999888888653
No 29
>PLN03003 Probable polygalacturonase At3g15720
Probab=96.89 E-value=0.014 Score=61.20 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=39.9
Q ss_pred CCCCeEEEe-CCccEEEEeeEEeccccCeEEeee--------CCeeEEEEceeeeccCeeeee
Q 016398 185 SDGDGISIF-GSRDIWIDHCTFSHCYDGLIDIVY--------GSTAITISNNYMFHHNEVMLM 238 (390)
Q Consensus 185 ~~~DaIsi~-gs~nVWIDHcs~s~~~Dglidi~~--------~s~~ITISnn~f~~H~k~~L~ 238 (390)
.++|+|+|. +++||+|.+|++..++ | |.|.. +..+|+|+||.|.+-..+..|
T Consensus 208 tGDDCIaiksgs~NI~I~n~~c~~GH-G-ISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRI 268 (456)
T PLN03003 208 TGDDCIAINSGTSNIHISGIDCGPGH-G-ISIGSLGKDGETATVENVCVQNCNFRGTMNGARI 268 (456)
T ss_pred cCCCeEEeCCCCccEEEEeeEEECCC-C-eEEeeccCCCCcceEEEEEEEeeEEECCCcEEEE
Confidence 578999997 5789999999997653 3 34321 257999999999987666655
No 30
>PLN02793 Probable polygalacturonase
Probab=96.86 E-value=0.026 Score=59.15 Aligned_cols=109 Identities=16% Similarity=0.237 Sum_probs=77.3
Q ss_pred eEEeccCceEEecCcceE-----Eec-------CCcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCe
Q 016398 122 ELVMNSYKTIDGRGFNVQ-----MSN-------GPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDG 189 (390)
Q Consensus 122 ~L~i~snkTI~G~ga~i~-----I~~-------G~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~Da 189 (390)
.|.|.-.=||+|+|..-- ... -.-|++.+++||.|++|++++. ..=.
T Consensus 144 ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS---------------------p~~~ 202 (443)
T PLN02793 144 HLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS---------------------QQMH 202 (443)
T ss_pred eEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC---------------------CCeE
Confidence 355554457888875310 000 1136788999999999999964 1224
Q ss_pred EEEeCCccEEEEeeEEec-----cccCeEEeeeCCeeEEEEceeeeccCeeeeeccCCCCCCCCcceEEEEeeEec
Q 016398 190 ISIFGSRDIWIDHCTFSH-----CYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFG 260 (390)
Q Consensus 190 Isi~gs~nVWIDHcs~s~-----~~Dglidi~~~s~~ITISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~ 260 (390)
|.+.+++||.|++.++.. -.||. |+ ..+++|+|++|.|...|.+..+.+.. .+|++.++.+.
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGI-di-~~s~nV~I~n~~I~~gDDcIaik~~s-------~nI~I~n~~c~ 269 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGI-HI-SASRGVVIKDSIVRTGDDCISIVGNS-------SRIKIRNIACG 269 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcE-ee-eccceEEEEeCEEeCCCCeEEecCCc-------CCEEEEEeEEe
Confidence 778889999999999975 35775 75 57899999999999988877775432 26777777763
No 31
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.61 E-value=0.048 Score=56.52 Aligned_cols=159 Identities=20% Similarity=0.240 Sum_probs=99.9
Q ss_pred eEEeccCceEEecCcce------EEe-c----CCcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeE
Q 016398 122 ELVMNSYKTIDGRGFNV------QMS-N----GPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGI 190 (390)
Q Consensus 122 ~L~i~snkTI~G~ga~i------~I~-~----G~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaI 190 (390)
.|.|...=||+|||..- ... + -.-|.+..++||.|++|+|++. ..=.|
T Consensus 123 ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS---------------------p~w~i 181 (404)
T PLN02188 123 GLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS---------------------KFFHI 181 (404)
T ss_pred eEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC---------------------CCeEE
Confidence 46666667889988631 000 0 1235778899999999999964 22357
Q ss_pred EEeCCccEEEEeeEEec-----cccCeEEeeeCCeeEEEEceeeeccCeeeeeccCCCCCCCCcceEEEEeeEecCCC--
Q 016398 191 SIFGSRDIWIDHCTFSH-----CYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGL-- 263 (390)
Q Consensus 191 si~gs~nVWIDHcs~s~-----~~Dglidi~~~s~~ITISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~-- 263 (390)
.+..++||.|++.++.. -.||. |+ ..+++|+|.+|.|...|.+.-+++..+ +|++.++....+.
T Consensus 182 ~~~~~~~v~i~~v~I~~~~~spNtDGi-di-~~s~nV~I~n~~I~~GDDcIaiksg~~-------nI~I~n~~c~~ghGi 252 (404)
T PLN02188 182 ALVECRNFKGSGLKISAPSDSPNTDGI-HI-ERSSGVYISDSRIGTGDDCISIGQGNS-------QVTITRIRCGPGHGI 252 (404)
T ss_pred EEEccccEEEEEEEEeCCCCCCCCCcE-ee-eCcccEEEEeeEEeCCCcEEEEccCCc-------cEEEEEEEEcCCCcE
Confidence 88899999999999975 35776 75 578999999999999888888864321 5777666663211
Q ss_pred ----CCCCCc-ccCceEEEEcceeeCCcceEEec---------CCCceEEEEecEEEcCCCC
Q 016398 264 ----VQRMPR-CRHGFFHIVNNIYTGWEMYAIGG---------SANPTINSQGNVFIASNDE 311 (390)
Q Consensus 264 ----~~R~Pr-~r~G~~hvvNN~~~~~~~yaigg---------~~~~~i~~egN~F~~~~~~ 311 (390)
..+.+- -....+.|-|+.+.+-. +++.. +.-..|.+++-.++....+
T Consensus 253 siGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~p 313 (404)
T PLN02188 253 SVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFENIVMNNVTNP 313 (404)
T ss_pred EeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEEeEEecCccce
Confidence 000000 01124677777776532 22211 1113566777776665543
No 32
>smart00656 Amb_all Amb_all domain.
Probab=96.50 E-value=0.12 Score=47.98 Aligned_cols=135 Identities=21% Similarity=0.200 Sum_probs=80.3
Q ss_pred cCceEEecCcceEEecCCcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEE
Q 016398 127 SYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTF 205 (390)
Q Consensus 127 snkTI~G~ga~i~I~~G~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~ 205 (390)
.|++|.+..... ..++-+|.+..++||.|.+..|....+. +.........+.+. ++++|-|-.|.|
T Consensus 45 rnl~i~~~~~~~-~~~~D~i~~~~~~~VwIDHct~s~~~~~------------~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 45 RNLTIHDPKPVY-GSDGDAISIDGSSNVWIDHVSLSGCTVT------------GFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eCCEEECCccCC-CCCCCEEEEeCCCeEEEEccEeEcceec------------cCCCCCCCccEEECcccccEEEECceE
Confidence 577777753321 1135578888999999999999864211 10011122334454 578888888887
Q ss_pred eccccCeEEeeeCC------eeEEEEceeeecc-CeeeeeccCCCCCCCCcceEEEEeeEecCCCCCCCCccc-CceEEE
Q 016398 206 SHCYDGLIDIVYGS------TAITISNNYMFHH-NEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCR-HGFFHI 277 (390)
Q Consensus 206 s~~~Dglidi~~~s------~~ITISnn~f~~H-~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~Pr~r-~G~~hv 277 (390)
....-+++--...+ ..||+.+|+|.+. .+..++.. . ++-+..|+| .+..+-.--++ .+.+.+
T Consensus 112 ~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~--------g-~~hv~NN~~-~n~~~~~~~~~~~~~v~~ 181 (190)
T smart00656 112 HNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRF--------G-YVHVYNNYY-TGWTSYAIGGRMGATILS 181 (190)
T ss_pred ecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccC--------C-EEEEEeeEE-eCcccEeEecCCCcEEEE
Confidence 65444333211111 2799999999863 23333321 1 577889999 44332221222 468999
Q ss_pred EcceeeC
Q 016398 278 VNNIYTG 284 (390)
Q Consensus 278 vNN~~~~ 284 (390)
-||||.+
T Consensus 182 E~N~F~~ 188 (190)
T smart00656 182 EGNYFEA 188 (190)
T ss_pred ECeEEEC
Confidence 9999976
No 33
>PLN02432 putative pectinesterase
Probab=96.17 E-value=0.093 Score=52.21 Aligned_cols=111 Identities=15% Similarity=0.232 Sum_probs=70.2
Q ss_pred hHHHhhhC-----CCCeEEEEeeceEEEeCceEEe---ccCceEEecCcceE-Eec--------CCcEEEeccccEEEEc
Q 016398 96 SLRYAVIQ-----EEPLWIIFDHDMVINLKQELVM---NSYKTIDGRGFNVQ-MSN--------GPCISIYNVSNIIIHN 158 (390)
Q Consensus 96 sLr~av~~-----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~-I~~--------G~gi~i~~~~NVIIrn 158 (390)
|+.+||.. .+|.+|.+ ..| ..++.|.| .+|+||.|.+..-+ |.. .+.+.+ .++|++.+|
T Consensus 25 TIq~Aida~p~~~~~~~~I~I-~~G--~Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~n 100 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWV-KPG--IYREKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRF 100 (293)
T ss_pred CHHHHHhhccccCCceEEEEE-eCc--eeEEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEe
Confidence 67777753 23444444 445 34566777 38999999986533 321 123445 679999999
Q ss_pred eEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEEeeeCCeeEEEEceeeec
Q 016398 159 IYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFH 231 (390)
Q Consensus 159 L~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~~ 231 (390)
|+|++... ..+-|+-+. .++++-+.+|.|.-..|=|.+- ...--+.+|+++.
T Consensus 101 lt~~Nt~g------------------~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~G 153 (293)
T PLN02432 101 LTIQNTFG------------------SSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIEG 153 (293)
T ss_pred eEEEeCCC------------------CCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEEe
Confidence 99997532 123344443 4788889999999877777641 2344556666654
No 34
>PLN02682 pectinesterase family protein
Probab=95.89 E-value=0.15 Score=52.36 Aligned_cols=118 Identities=16% Similarity=0.232 Sum_probs=71.3
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEe---ccCceEEecCcceE-Eec----------C--------CcEEEe
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVM---NSYKTIDGRGFNVQ-MSN----------G--------PCISIY 149 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~-I~~----------G--------~gi~i~ 149 (390)
|+.+||.. +..+++|+=..|+ .++.|.| .+|+||.|.|..-+ |.. | +.+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~--Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGT--YREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 78888753 2223444434453 4566777 38999999987533 321 1 12344
Q ss_pred ccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEEeeeCCeeEEEEcee
Q 016398 150 NVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNY 228 (390)
Q Consensus 150 ~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~ 228 (390)
.+++++.+||+|++..+.. ..| ..+.-|+-+. .++++-+.+|.|.-..|=|.+- ...--+.+|+
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~---------~~g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~ 225 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVP---------PPG---ALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCY 225 (369)
T ss_pred ECCCeEEEeeEEEcccccC---------CCC---CCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeE
Confidence 6789999999999864311 001 1223345443 4788999999999887777652 2344555666
Q ss_pred eec
Q 016398 229 MFH 231 (390)
Q Consensus 229 f~~ 231 (390)
++.
T Consensus 226 IeG 228 (369)
T PLN02682 226 IEG 228 (369)
T ss_pred Ecc
Confidence 654
No 35
>PLN02176 putative pectinesterase
Probab=95.76 E-value=0.24 Score=50.24 Aligned_cols=119 Identities=15% Similarity=0.177 Sum_probs=73.0
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceEEe---cC------CcEEEeccccEEEEce
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQMS---NG------PCISIYNVSNIIIHNI 159 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~I~---~G------~gi~i~~~~NVIIrnL 159 (390)
|+.+||.. ...+++||=..|+- ++.|.|. +|+||.|.|..-+|+ ++ ..+.+ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY--~EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIY--REKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEE--EEEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 67888743 23355565566643 4667773 799999998753332 11 13555 6899999999
Q ss_pred EEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEEeeeCCeeEEEEceeeec
Q 016398 160 YIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFH 231 (390)
Q Consensus 160 ~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~~ 231 (390)
+|++..+..+ .. ....+-|+-+. .++.+-+.+|.|.-..|=|.+- ...--+.+|+++.
T Consensus 130 T~~Nt~~~~~--------~~---~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIeG 188 (340)
T PLN02176 130 TFKNTYNIAS--------NS---SRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVISG 188 (340)
T ss_pred EEEeCCCccC--------CC---CCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEEe
Confidence 9998643100 00 01233455554 4788889999998777766652 2344555565553
No 36
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=95.65 E-value=0.15 Score=54.73 Aligned_cols=102 Identities=21% Similarity=0.264 Sum_probs=70.1
Q ss_pred cEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeee-------
Q 016398 145 CISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVY------- 217 (390)
Q Consensus 145 gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~------- 217 (390)
++..+.++|+.|+||+|..-.+ ...|+|-+..++||-|+-|.|+.+.| +|-++.
T Consensus 263 ~~h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtgDD-~I~iksg~~~~~~ 323 (542)
T COG5434 263 TVHPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTGDD-CIAIKSGAGLDGK 323 (542)
T ss_pred EEeeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecCCc-eEEeecccCCccc
Confidence 4666789999999999974221 26799999999999999999998444 333332
Q ss_pred ----CCeeEEEEceeeeccCeeeeeccCCCCCCCCcceEEEEeeEecCCCCCCCCcc
Q 016398 218 ----GSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRC 270 (390)
Q Consensus 218 ----~s~~ITISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~Pr~ 270 (390)
.+.+|+|++|+|..-..+..+|+.-. .....|++-.|.| .+ ..|-=|+
T Consensus 324 ~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~---ggv~ni~ved~~~-~~-~d~GLRi 375 (542)
T COG5434 324 KGYGPSRNIVIRNCYFSSGHGGLVLGSEMG---GGVQNITVEDCVM-DN-TDRGLRI 375 (542)
T ss_pred ccccccccEEEecceecccccceEeeeecC---CceeEEEEEeeee-cc-Ccceeee
Confidence 34689999999996555555564321 1234677888888 34 3455444
No 37
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.50 E-value=0.2 Score=46.94 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=68.2
Q ss_pred cCCcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEE------
Q 016398 142 NGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLID------ 214 (390)
Q Consensus 142 ~G~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglid------ 214 (390)
++-+|.|.+++||+|.+..|........ .......|.+. ++++|-|-+|-|......++-
T Consensus 74 ~~Dai~i~~~~nVWIDH~sfs~~~~~~~-------------~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~ 140 (200)
T PF00544_consen 74 DGDAISIDNSSNVWIDHCSFSWGNFECN-------------SDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSN 140 (200)
T ss_dssp S--SEEEESTEEEEEES-EEEETTS-GG-------------GSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTC
T ss_pred CCCeEEEEecccEEEeccEEeccccccc-------------cccCCceEEEEeCCceEEEEchhccccccccccCCCCCc
Confidence 4556999999999999999997632100 00123345664 588888888888875433321
Q ss_pred eeeCCeeEEEEceeeecc-CeeeeeccCCCCCCCCcceEEEEeeEecCCCCCCCCccc-CceEEEEccee
Q 016398 215 IVYGSTAITISNNYMFHH-NEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCR-HGFFHIVNNIY 282 (390)
Q Consensus 215 i~~~s~~ITISnn~f~~H-~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~Pr~r-~G~~hvvNN~~ 282 (390)
.......||+.+|+|.++ .+..++... ++-+..|+| .+..+..=.+| .+.+-+-||||
T Consensus 141 ~~~~~~~vT~hhN~f~~~~~R~P~~r~G---------~~Hv~NN~~-~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 141 STDRGLRVTFHHNYFANTNSRNPRVRFG---------YVHVYNNYY-YNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp GGGTTEEEEEES-EEEEEEE-TTEECSC---------EEEEES-EE-EEECSESEEEETTEEEEEES-EE
T ss_pred cccCCceEEEEeEEECchhhCCCccccc---------EEEEEEeee-ECCCCEEEEccCCeEEEEECcCC
Confidence 111236999999999864 344444221 577888988 34344432333 35788888886
No 38
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=95.49 E-value=0.18 Score=54.22 Aligned_cols=98 Identities=14% Similarity=0.268 Sum_probs=63.6
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceEE-ec------C------CcEEEeccccEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQM-SN------G------PCISIYNVSNII 155 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~I-~~------G------~gi~i~~~~NVI 155 (390)
|+.+||.. ...++||+=..|+ .++.+.|. +|+||.|.|...+| .+ | +.+.+ .+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~Gv--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGV--YEENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCce--eEEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 67788853 4456666666675 34566663 79999999976443 32 2 12445 579999
Q ss_pred EEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeE
Q 016398 156 IHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLI 213 (390)
Q Consensus 156 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dgli 213 (390)
.+||.|++-.. + ...-|+-+. .++++-+-+|.|.-..|=|.
T Consensus 321 a~nitf~Ntag--~---------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy 362 (541)
T PLN02416 321 ARDITIENTAG--P---------------EKHQAVALRVNADLVALYRCTINGYQDTLY 362 (541)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEEcCccEEEEcceEecccchhc
Confidence 99999997531 1 122344443 46888899999887666543
No 39
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=95.47 E-value=1.9 Score=46.39 Aligned_cols=164 Identities=13% Similarity=0.271 Sum_probs=100.2
Q ss_pred hHHHhhhC---CC----CeEEEEeeceEEEeCceEEec---cCceEEecCcceE-Ee------cC------CcEEEeccc
Q 016398 96 SLRYAVIQ---EE----PLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQ-MS------NG------PCISIYNVS 152 (390)
Q Consensus 96 sLr~av~~---~~----P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~-I~------~G------~gi~i~~~~ 152 (390)
|+.+||.. .. -|+||+=..|+- ++.|.|. +|+||.|.|..-+ |. +| +.+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 67778753 11 256666666653 4566663 7999999987633 33 22 12344 579
Q ss_pred cEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccc-----------------cCeEE
Q 016398 153 NIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCY-----------------DGLID 214 (390)
Q Consensus 153 NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~-----------------Dglid 214 (390)
++|.+||.|++-.. + ...-|+-++ .++..-+.+|+|.-.. .|.||
T Consensus 314 ~F~a~~it~~Ntag--~---------------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVD 376 (538)
T PLN03043 314 RFVAVDVTFRNTAG--P---------------EKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVD 376 (538)
T ss_pred CEEEEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccc
Confidence 99999999997531 1 123455554 4778889999987543 46778
Q ss_pred eeeCCeeEEEEceeeecc-----Ceeeee--ccCCCCCCCCcceEEEEeeEecCC--C----------CCCCCcccCceE
Q 016398 215 IVYGSTAITISNNYMFHH-----NEVMLM--GHSDDFSADKNMQVTIAFNFFGDG--L----------VQRMPRCRHGFF 275 (390)
Q Consensus 215 i~~~s~~ITISnn~f~~H-----~k~~L~--G~sd~~~~d~~~~vTi~~N~f~~n--~----------~~R~Pr~r~G~~ 275 (390)
++-|.-.+-+++|.|.-- .+.++- |..+ .....-+.|+++.+... + -+| |--.+..+
T Consensus 377 FIFG~a~avfq~c~i~~r~~~~~~~~~iTA~~r~~---~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGR-pW~~ysr~ 452 (538)
T PLN03043 377 FIFGNAAAIFQNCNLYARKPMANQKNAFTAQGRTD---PNQNTGISIINCTIEAAPDLAMDPNSTMNFLGR-PWKPYSRT 452 (538)
T ss_pred eEeecceeeeeccEEEEecCCCCCCceEEecCCCC---CCCCceEEEEecEEecCCcccccccccceeccC-CCCCCceE
Confidence 888888889999998631 122222 2211 11223577888877311 0 123 32236677
Q ss_pred EEEcceee
Q 016398 276 HIVNNIYT 283 (390)
Q Consensus 276 hvvNN~~~ 283 (390)
-+.|.++.
T Consensus 453 v~~~s~i~ 460 (538)
T PLN03043 453 VYMQSYIG 460 (538)
T ss_pred EEEecccC
Confidence 77877774
No 40
>PLN02773 pectinesterase
Probab=95.36 E-value=0.31 Score=49.08 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=60.6
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceE-Eec----------------C------Cc
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQ-MSN----------------G------PC 145 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~-I~~----------------G------~g 145 (390)
|+..||.. ...+++||=..|+ ..+.|.|. +|+||.|++..-+ |.. | +.
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~--Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGV--YRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCce--EEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 67777743 2224444444453 44667773 6899999876422 321 1 12
Q ss_pred EEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEE
Q 016398 146 ISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLID 214 (390)
Q Consensus 146 i~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglid 214 (390)
+.+ .++|++.+||+|++..+. ..+-|+.+. .++.+-+.+|.|.-..|=|.+
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~ 148 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYL 148 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEe
Confidence 334 579999999999986321 123344443 468888999988876665543
No 41
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=95.32 E-value=0.26 Score=52.81 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=63.0
Q ss_pred hHHHhhhC-----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceE-Eec------CC------cEEEeccccE
Q 016398 96 SLRYAVIQ-----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQ-MSN------GP------CISIYNVSNI 154 (390)
Q Consensus 96 sLr~av~~-----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~-I~~------G~------gi~i~~~~NV 154 (390)
|+.+||.. ...|++|+=..|+ .++.+.|. +|+||.|.|..-+ |++ |. .+.+ .++++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v-~~~~F 315 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGT--YHENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAA-MGDGF 315 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCe--eEEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEE-EcCCe
Confidence 78888852 2235666666665 44666673 7999999987633 332 11 2334 68999
Q ss_pred EEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeE
Q 016398 155 IIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLI 213 (390)
Q Consensus 155 IIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dgli 213 (390)
+.+||.|++-.. + ...-|+-+. .++.+.+.+|.|.-..|=|.
T Consensus 316 ~a~nitf~Ntag--~---------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy 358 (529)
T PLN02170 316 IARDITFVNSAG--P---------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLY 358 (529)
T ss_pred EEEeeEEEecCC--C---------------CCCceEEEEecCCcEEEEeeeEeccCCcce
Confidence 999999997531 1 122344443 46788899999987655544
No 42
>PLN02634 probable pectinesterase
Probab=94.90 E-value=0.61 Score=47.72 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=70.6
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEe---ccCceEEecCcceEEe-----------cC--------CcEEEe
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVM---NSYKTIDGRGFNVQMS-----------NG--------PCISIY 149 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~I~-----------~G--------~gi~i~ 149 (390)
|+.+||.. ...+++|+=..|+ ..+.|.| .+|+||.|.|...+|+ +| +.+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGF--YREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCce--EEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 67777743 2224444444454 4566777 3799999998764432 11 12334
Q ss_pred ccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEEeeeCCeeEEEEcee
Q 016398 150 NVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNY 228 (390)
Q Consensus 150 ~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~ 228 (390)
.+++++.+||+|++..+.. ..| ...+-|+-+. .++++-+.+|.|.-..|=|.+- ...--+.+|+
T Consensus 147 ~a~~F~a~niTf~Nta~~~---------~~g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~Cy 211 (359)
T PLN02634 147 YANYFTARNISFKNTAPAP---------MPG---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECY 211 (359)
T ss_pred ECCCeEEEeCeEEeCCccC---------CCC---CCCCceEEEEecCCcEEEEEeEEecccceeeeC---CCCEEEEeeE
Confidence 5789999999999865311 001 1233444443 4678999999998877777642 2244555666
Q ss_pred eec
Q 016398 229 MFH 231 (390)
Q Consensus 229 f~~ 231 (390)
++.
T Consensus 212 IeG 214 (359)
T PLN02634 212 IEG 214 (359)
T ss_pred Ecc
Confidence 653
No 43
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=94.85 E-value=0.37 Score=51.86 Aligned_cols=98 Identities=13% Similarity=0.316 Sum_probs=62.9
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceEEe-------cCCc------EEEeccccEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQMS-------NGPC------ISIYNVSNII 155 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~I~-------~G~g------i~i~~~~NVI 155 (390)
|+.+||.. ...|+|||=..|+ .++.+.|. +|+||.|.|..-+|+ +|.+ +.+ .+++++
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~~~~F~ 326 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGT--YKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAA-VGDGFI 326 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCce--eeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEE-ECCceE
Confidence 67778753 3345666666665 45667774 799999998764432 2211 233 579999
Q ss_pred EEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeE
Q 016398 156 IHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLI 213 (390)
Q Consensus 156 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dgli 213 (390)
.+||.|++-.. + ...-|+-++ .++.+-+.+|.|.-..|=|.
T Consensus 327 a~nitf~Ntag--~---------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy 368 (548)
T PLN02301 327 AQDIWFQNTAG--P---------------EKHQAVALRVSADQAVINRCRIDAYQDTLY 368 (548)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEecCCcEEEEeeeeeeccccce
Confidence 99999997531 1 122444443 46888899999987655443
No 44
>PLN02304 probable pectinesterase
Probab=94.85 E-value=0.57 Score=48.26 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=74.3
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEe---ccCceEEecCcceE-Eec--C----------CcEEEeccccEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVM---NSYKTIDGRGFNVQ-MSN--G----------PCISIYNVSNII 155 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~-I~~--G----------~gi~i~~~~NVI 155 (390)
|+.+||.. ...+++||=..|+ ..+.|.| .+|+||.|+|..-+ |.. . ..+.+ .+++++
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v-~a~~F~ 165 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGI--YYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV-FASNFI 165 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeE--eEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE-ECCCeE
Confidence 78888853 2234545445553 4467777 38999999987533 321 1 12334 579999
Q ss_pred EEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEEeeeCCeeEEEEceeeec
Q 016398 156 IHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFH 231 (390)
Q Consensus 156 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~~ 231 (390)
.+||+|++..+.. .+ | ..+.-|+-+. .++.+-+.+|.|.-..|=|.+- ...--+.+|++..
T Consensus 166 a~nITf~Nta~~~------~~---g---~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIeG 227 (379)
T PLN02304 166 AKNISFMNVAPIP------KP---G---DVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQG 227 (379)
T ss_pred EEeeEEEecCCCC------CC---C---CCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEcc
Confidence 9999999865311 00 1 1233455554 4788999999999888888752 2344566777764
No 45
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=94.70 E-value=0.47 Score=50.77 Aligned_cols=99 Identities=13% Similarity=0.227 Sum_probs=62.1
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceE-Ee------cCC------cEEEeccccEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQ-MS------NGP------CISIYNVSNII 155 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~-I~------~G~------gi~i~~~~NVI 155 (390)
|+.+||.. ...+++||=..|+ .++.+.|. +|+||.|.|..-+ |. +|. .+.+ .+++++
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~~F~ 296 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGV--YLENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAV-SGRGFI 296 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCce--eEEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEE-ECCCeE
Confidence 67778753 2234555545554 34566663 6899999987533 32 121 1334 578999
Q ss_pred EEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEE
Q 016398 156 IHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLID 214 (390)
Q Consensus 156 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglid 214 (390)
.+||.|++-.. + ...-|+-++ .++..-+.+|.|.-..|=|.+
T Consensus 297 a~nitf~Ntag--~---------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~ 339 (520)
T PLN02201 297 ARDITFQNTAG--P---------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYT 339 (520)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEe
Confidence 99999997532 1 123445554 468888999999876665543
No 46
>PLN02671 pectinesterase
Probab=94.63 E-value=0.64 Score=47.55 Aligned_cols=117 Identities=14% Similarity=0.170 Sum_probs=70.0
Q ss_pred hHHHhhhC-----CCCeEEEEeeceEEEeCceEEe---ccCceEEecCc---ceEEec----------C--------CcE
Q 016398 96 SLRYAVIQ-----EEPLWIIFDHDMVINLKQELVM---NSYKTIDGRGF---NVQMSN----------G--------PCI 146 (390)
Q Consensus 96 sLr~av~~-----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga---~i~I~~----------G--------~gi 146 (390)
|+.+||.. ++|.+|.+ ..|+ ..+.|.| .+++||.|.|. ...|.. | +.+
T Consensus 73 TIQ~AIdavP~~~~~~~~I~I-k~Gv--Y~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv 149 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYI-LPGI--YREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASV 149 (359)
T ss_pred CHHHHHHhchhcCCccEEEEE-eCce--EEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEE
Confidence 67777743 23444444 4453 4566777 38999999874 334441 1 113
Q ss_pred EEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeEEEEc
Q 016398 147 SIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISN 226 (390)
Q Consensus 147 ~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISn 226 (390)
.+ .+++++.+||+|++..+..++ .. ....-|+.+ .++++-+.+|.|.-..|=|.+- ...--+.+
T Consensus 150 ~v-~a~~F~a~nitfeNt~~~~~g-------~~----~~QAVALrv-~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~ 213 (359)
T PLN02671 150 TI-ESDYFCATGITFENTVVAEPG-------GQ----GMQAVALRI-SGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQ 213 (359)
T ss_pred EE-ECCceEEEeeEEEcCCCCCCC-------CC----CccEEEEEE-cCccEEEEcceEeccccccEeC---CCcEEEEe
Confidence 34 578999999999986321110 00 123344444 4688999999999888877652 22345566
Q ss_pred eeeec
Q 016398 227 NYMFH 231 (390)
Q Consensus 227 n~f~~ 231 (390)
|+++.
T Consensus 214 CyIeG 218 (359)
T PLN02671 214 CYIQG 218 (359)
T ss_pred cEEEE
Confidence 66654
No 47
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.55 E-value=0.64 Score=47.14 Aligned_cols=135 Identities=18% Similarity=0.284 Sum_probs=67.9
Q ss_pred ceEEeccCceEEecCcceEEec---CCcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEE-eCCc
Q 016398 121 QELVMNSYKTIDGRGFNVQMSN---GPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISI-FGSR 196 (390)
Q Consensus 121 ~~L~i~snkTI~G~ga~i~I~~---G~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi-~gs~ 196 (390)
..++|+.-+|+-|.-- +.+.+ |.-+++ .+-++||++|++|+.-.. ...-+-+|-+ ..++
T Consensus 45 g~~vInr~l~l~ge~g-a~l~g~g~G~~vtv-~aP~~~v~Gl~vr~sg~~---------------lp~m~agI~v~~~at 107 (408)
T COG3420 45 GNFVINRALTLRGENG-AVLDGGGKGSYVTV-AAPDVIVEGLTVRGSGRS---------------LPAMDAGIFVGRTAT 107 (408)
T ss_pred ccEEEccceeeccccc-cEEecCCcccEEEE-eCCCceeeeEEEecCCCC---------------cccccceEEeccCcc
Confidence 4577777777777622 22321 333677 789999999999953111 1112233333 2344
Q ss_pred cEEEEeeEEeccccCeEEeeeCCeeEEEEceeeec-----------------cCeeeeeccCCCCCCCCcceEEEEeeEe
Q 016398 197 DIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFH-----------------HNEVMLMGHSDDFSADKNMQVTIAFNFF 259 (390)
Q Consensus 197 nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~~-----------------H~k~~L~G~sd~~~~d~~~~vTi~~N~f 259 (390)
.--|.||.+-.+.-|.. .+++..+-|--|.+.. -..+.+.|..-++..|...--|=+||-|
T Consensus 108 ~A~Vr~N~l~~n~~Gi~--l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~ 185 (408)
T COG3420 108 GAVVRHNDLIGNSFGIY--LHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVF 185 (408)
T ss_pred cceEEcccccccceEEE--EeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEccccccee
Confidence 55555555555444432 1334444444444331 1223333433344444444445578888
Q ss_pred cCCCCCCCCcccCceEEEE
Q 016398 260 GDGLVQRMPRCRHGFFHIV 278 (390)
Q Consensus 260 ~~n~~~R~Pr~r~G~~hvv 278 (390)
. + .|+-.+||| +|+.
T Consensus 186 ~-g--nr~~~~Ryg-vHyM 200 (408)
T COG3420 186 K-G--NRFRDLRYG-VHYM 200 (408)
T ss_pred c-c--cchhheeee-EEEE
Confidence 4 2 266667776 3443
No 48
>PLN02497 probable pectinesterase
Probab=94.51 E-value=0.71 Score=46.79 Aligned_cols=120 Identities=13% Similarity=0.176 Sum_probs=71.9
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEe---ccCceEEecCcce-EEe--cC------CcEEEeccccEEEEce
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVM---NSYKTIDGRGFNV-QMS--NG------PCISIYNVSNIIIHNI 159 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i-~I~--~G------~gi~i~~~~NVIIrnL 159 (390)
|+.+||.. ...+++|+=..| ..++.|.| .+++||.|+|..- .|. ++ ..+.+ .+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G--~Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAG--LYREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCc--EEEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 67777743 223444444445 34566777 3899999998752 232 11 12445 6899999999
Q ss_pred EEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEEeeeCCeeEEEEceeeec
Q 016398 160 YIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFH 231 (390)
Q Consensus 160 ~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~~ 231 (390)
+|++..+.. . .+. .....-|+-+. .++++-+.+|.|.-..|=|.+- ...--+.+|+++.
T Consensus 123 T~~Nt~~~~-~--------~~~-~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~IeG 182 (331)
T PLN02497 123 TFANSYNFP-S--------KGN-KNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQG 182 (331)
T ss_pred EEEeCCCCc-c--------ccC-CCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEEe
Confidence 999864210 0 000 00123455554 4788889999999888877652 2344555666653
No 49
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=94.45 E-value=0.59 Score=49.81 Aligned_cols=98 Identities=15% Similarity=0.270 Sum_probs=62.2
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceEE-ec------CC------cEEEeccccEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQM-SN------GP------CISIYNVSNII 155 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~I-~~------G~------gi~i~~~~NVI 155 (390)
|+.+||.+ ...+++|+=..|+ .++.|.|. +|+||.|.|..-+| .+ |. .+.+ .+++++
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v-~g~gF~ 287 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGV--YDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVAS-NGDGFI 287 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCe--eEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEE-EcCCeE
Confidence 67788753 2234455445554 44667773 79999999976443 21 21 1233 578999
Q ss_pred EEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeE
Q 016398 156 IHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLI 213 (390)
Q Consensus 156 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dgli 213 (390)
.+||.|++-. ++ ..+-|+-++ .++..-+.+|.|.-..|=|.
T Consensus 288 A~nitf~Nta--g~---------------~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy 329 (509)
T PLN02488 288 GIDMCFRNTA--GP---------------AKGPAVALRVSGDMSVIYRCRIEGYQDALY 329 (509)
T ss_pred EEeeEEEECC--CC---------------CCCceEEEEecCCcEEEEcceeeccCccee
Confidence 9999999753 11 124566665 57888899999987655443
No 50
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=94.42 E-value=0.56 Score=50.64 Aligned_cols=115 Identities=16% Similarity=0.316 Sum_probs=72.2
Q ss_pred hHHHhhhC-----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceE-Eec-------C------CcEEEecccc
Q 016398 96 SLRYAVIQ-----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQ-MSN-------G------PCISIYNVSN 153 (390)
Q Consensus 96 sLr~av~~-----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~-I~~-------G------~gi~i~~~~N 153 (390)
|+.+||.. ..-|.|||=..|+ .++.+.|. .|+||.|.|..-+ |.+ | +.+.+ .+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~Gv--Y~E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGV--YEETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCce--EEeeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCC
Confidence 67788743 1235566556665 34556663 7999999987533 321 2 11334 5789
Q ss_pred EEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEecccc-----------------CeEEe
Q 016398 154 IIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYD-----------------GLIDI 215 (390)
Q Consensus 154 VIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~D-----------------glidi 215 (390)
++.+||+|++-. ++ ...-|+-++ .++.+.+.+|.|.-..| |.||+
T Consensus 332 f~a~~it~~Nta--g~---------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDF 394 (553)
T PLN02708 332 FMARDLTIQNTA--GP---------------DAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDF 394 (553)
T ss_pred eEEEeeEEEcCC--CC---------------CCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCE
Confidence 999999999752 11 123455554 57889999999986555 45555
Q ss_pred eeCCeeEEEEceeee
Q 016398 216 VYGSTAITISNNYMF 230 (390)
Q Consensus 216 ~~~s~~ITISnn~f~ 230 (390)
+-|.-.+-+++|.|.
T Consensus 395 IFG~a~avfq~c~i~ 409 (553)
T PLN02708 395 IFGNSAAVFQDCAIL 409 (553)
T ss_pred EecCceEEEEccEEE
Confidence 555555556666554
No 51
>PLN02665 pectinesterase family protein
Probab=94.41 E-value=5.7 Score=40.86 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=72.4
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceE-EecC-----------CcEEEeccccEEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQ-MSNG-----------PCISIYNVSNIII 156 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~-I~~G-----------~gi~i~~~~NVII 156 (390)
|+.+||.. ...++|||=..|+ .++.|.|. +|+||.|++..-+ |... +.+.+ .+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGE--YNEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcE--EEEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEE
Confidence 78888853 2335566555664 44667773 7999999976532 3311 12444 6899999
Q ss_pred EceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEecccc-----------------CeEEeeeCC
Q 016398 157 HNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYD-----------------GLIDIVYGS 219 (390)
Q Consensus 157 rnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~D-----------------glidi~~~s 219 (390)
+||.|++-.+.+.+ ...| ...-|+.+ .++.+-+.+|.|.-..| |.+|++-|.
T Consensus 159 ~nitf~Nta~~~~~------~~~g----~QAVAl~v-~gDka~f~~C~f~G~QDTL~~~~gr~yf~~CyIeG~VDFIFG~ 227 (366)
T PLN02665 159 ANIIIKNSAPRPDG------KRKG----AQAVAMRI-SGDKAAFYNCRFIGFQDTLCDDKGRHFFKDCYIEGTVDFIFGS 227 (366)
T ss_pred EeeEEEeCCCCcCC------CCCC----cceEEEEE-cCCcEEEEcceeccccceeEeCCCCEEEEeeEEeeccceeccc
Confidence 99999986532110 0001 12334444 36778899998876555 445555555
Q ss_pred eeEEEEceeee
Q 016398 220 TAITISNNYMF 230 (390)
Q Consensus 220 ~~ITISnn~f~ 230 (390)
-..-+.+|.|.
T Consensus 228 g~a~fe~C~i~ 238 (366)
T PLN02665 228 GKSLYLNTELH 238 (366)
T ss_pred cceeeEccEEE
Confidence 55555666554
No 52
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.34 E-value=1.9 Score=43.82 Aligned_cols=93 Identities=16% Similarity=0.117 Sum_probs=66.3
Q ss_pred EEeccCceEEecCcceEEecCCcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEe
Q 016398 123 LVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDH 202 (390)
Q Consensus 123 L~i~snkTI~G~ga~i~I~~G~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDH 202 (390)
|.+....|-++.-.+-.|....||.+.++..+.|..-+|.+... .+....+++|+++.+..+-|=-
T Consensus 100 I~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~--------------~r~~~rGnGI~vyNa~~a~V~~ 165 (408)
T COG3420 100 IFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD--------------LRVAERGNGIYVYNAPGALVVG 165 (408)
T ss_pred EEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc--------------cchhhccCceEEEcCCCcEEEc
Confidence 44445555444322211223567889999999999999986542 1233678999999999999999
Q ss_pred eEEeccccCeEEeeeCCeeEEEEceeeec
Q 016398 203 CTFSHCYDGLIDIVYGSTAITISNNYMFH 231 (390)
Q Consensus 203 cs~s~~~Dglidi~~~s~~ITISnn~f~~ 231 (390)
+.+|...|+... ..|+.-+|+.|.|++
T Consensus 166 ndisy~rDgIy~--~~S~~~~~~gnr~~~ 192 (408)
T COG3420 166 NDISYGRDGIYS--DTSQHNVFKGNRFRD 192 (408)
T ss_pred CccccccceEEE--cccccceecccchhh
Confidence 999999999854 456677788887764
No 53
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=94.33 E-value=0.54 Score=51.10 Aligned_cols=116 Identities=13% Similarity=0.269 Sum_probs=71.4
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceE-EecCC------------cEEEeccccEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQ-MSNGP------------CISIYNVSNII 155 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~-I~~G~------------gi~i~~~~NVI 155 (390)
|+.+||.. ...|+||+=..|+-+-+ .|.|. +|+||.|.|..-+ |+++. .+.+ .+++++
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~F~ 363 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAGFI 363 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCCEE
Confidence 67888853 23356666566654321 36663 7999999987643 43221 1233 579999
Q ss_pred EEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccC-----------------eEEeee
Q 016398 156 IHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDG-----------------LIDIVY 217 (390)
Q Consensus 156 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dg-----------------lidi~~ 217 (390)
.+||.|++-.+ + ...-|+-++ .+++.-+.+|.|.-..|= .||++-
T Consensus 364 a~~itf~Ntag--~---------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 426 (587)
T PLN02484 364 ARDMTFENWAG--P---------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIF 426 (587)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceec
Confidence 99999998531 1 123455554 478888999998765554 445555
Q ss_pred CCeeEEEEceeee
Q 016398 218 GSTAITISNNYMF 230 (390)
Q Consensus 218 ~s~~ITISnn~f~ 230 (390)
|.-..-+++|.|.
T Consensus 427 G~a~avfq~C~i~ 439 (587)
T PLN02484 427 GNAAVVLQNCSIY 439 (587)
T ss_pred ccceeEEeccEEE
Confidence 5555555555553
No 54
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=94.29 E-value=0.61 Score=50.17 Aligned_cols=112 Identities=13% Similarity=0.232 Sum_probs=70.0
Q ss_pred hHHHhhhC-C-----CCeEEEEeeceEEEeCceEEec---cCceEEecCcceE-Eec------CC------cEEEecccc
Q 016398 96 SLRYAVIQ-E-----EPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQ-MSN------GP------CISIYNVSN 153 (390)
Q Consensus 96 sLr~av~~-~-----~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~-I~~------G~------gi~i~~~~N 153 (390)
|+.+||.. + ..|++|+=..|+ .++.+.|. +|+|+.|.|..-+ |.+ |. .+.+ .+++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v-~~~~ 313 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGI--YQENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGI-EGLH 313 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCE--eEEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEE-ECCC
Confidence 78888853 2 225555545554 34556663 7999999987533 432 11 1234 5899
Q ss_pred EEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEEeeeCCeeEEEEceeee
Q 016398 154 IIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMF 230 (390)
Q Consensus 154 VIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~ 230 (390)
++.+||+|++... + ..+-|+-++ .++...+.+|.|.-..|=|.+- +..--+.+|+++
T Consensus 314 F~a~nitf~Ntag--~---------------~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~ 371 (539)
T PLN02995 314 FIAKGITFRNTAG--P---------------AKGQAVALRSSSDLSIFYKCSIEGYQDTLMVH---SQRQFYRECYIY 371 (539)
T ss_pred eEEEeeEEEeCCC--C---------------CCCceEEEEEcCCceeEEcceEecccchhccC---CCceEEEeeEEe
Confidence 9999999997531 1 123555554 4788999999999877766541 223345555554
No 55
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=94.14 E-value=0.77 Score=49.30 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=62.4
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceE-Ee------cCC------cEEEeccccEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQ-MS------NGP------CISIYNVSNII 155 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~-I~------~G~------gi~i~~~~NVI 155 (390)
|+.+||.. ...+++|+=..|+-+ +.+.|. +|+||.|.|..-+ |. +|. .+.+ .+++++
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~a~~F~ 308 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGV-KGKGFI 308 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEE-ECCCEE
Confidence 67778753 223455544555443 556663 7899999987533 32 121 2334 578999
Q ss_pred EEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEE
Q 016398 156 IHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLID 214 (390)
Q Consensus 156 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglid 214 (390)
.+||.|++-.. + ...-|+-++ .++.+-+.+|.|.-..|=|.+
T Consensus 309 a~nitf~Ntag--~---------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~ 351 (530)
T PLN02933 309 AKDISFVNYAG--P---------------AKHQAVALRSGSDHSAFYRCEFDGYQDTLYV 351 (530)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEEeEEEeccccccc
Confidence 99999997531 1 123455554 478888999999876665543
No 56
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=94.13 E-value=0.77 Score=50.02 Aligned_cols=99 Identities=13% Similarity=0.195 Sum_probs=62.7
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceEEe-c------CC------cEEEeccccEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQMS-N------GP------CISIYNVSNII 155 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~I~-~------G~------gi~i~~~~NVI 155 (390)
|+.+||.. ...+++|+=..|+- ++.+.|. +|+||.|.|..-+|+ + |. .+.+ .+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIY--DETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA-LGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCee--EEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE-EcCCEE
Confidence 68888854 22355555555643 3556674 699999998764332 1 21 1334 679999
Q ss_pred EEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEE
Q 016398 156 IHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLID 214 (390)
Q Consensus 156 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglid 214 (390)
.+||.|++... + ...-|+-++ .++.+-+.+|.|.-..|=|.+
T Consensus 376 a~nitf~Ntag--~---------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~ 418 (596)
T PLN02745 376 AKSMGFRNTAG--P---------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYA 418 (596)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEeeEEeeccccccc
Confidence 99999997531 1 123444443 478888999999876665543
No 57
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=93.99 E-value=0.71 Score=50.84 Aligned_cols=163 Identities=17% Similarity=0.222 Sum_probs=98.9
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceEEe-------cCC------cEEEeccccEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQMS-------NGP------CISIYNVSNII 155 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~I~-------~G~------gi~i~~~~NVI 155 (390)
|+.+||.. ...|+||+=..|+ .++.+.|. .|+||.|.|..-+|+ +|. .+.+ .+++++
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v-~g~~F~ 340 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGI--YKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI-VGDHFI 340 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCc--eEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEE-ECCCeE
Confidence 68888854 2235555545553 44567774 589999998764433 121 1334 578999
Q ss_pred EEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEecc-----------------ccCeEEeee
Q 016398 156 IHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHC-----------------YDGLIDIVY 217 (390)
Q Consensus 156 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~-----------------~Dglidi~~ 217 (390)
.|||.|++-.. + ...-|+-++ .++..-+.+|.|.-. ..|.||++-
T Consensus 341 a~nitf~Ntag--~---------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 403 (670)
T PLN02217 341 AKNIGFENTAG--A---------------IKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLF 403 (670)
T ss_pred EEeeEEEeCCC--C---------------CCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEe
Confidence 99999997531 0 223455554 478888889988653 257788888
Q ss_pred CCeeEEEEceeeecc-----Ceeeee--ccCCCCCCCCcceEEEEeeEecCCCC-------------CCCCcccCceEEE
Q 016398 218 GSTAITISNNYMFHH-----NEVMLM--GHSDDFSADKNMQVTIAFNFFGDGLV-------------QRMPRCRHGFFHI 277 (390)
Q Consensus 218 ~s~~ITISnn~f~~H-----~k~~L~--G~sd~~~~d~~~~vTi~~N~f~~n~~-------------~R~Pr~r~G~~hv 277 (390)
|.-..-+++|.|.-- .++.+- |..+ .+...-+.|+++.+. ... +| |.-.+..+-+
T Consensus 404 G~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~---~~~~tGfvf~~C~i~-~~~~~~~~~~~~~~yLGR-PW~~ysrvVf 478 (670)
T PLN02217 404 GDAAAVFQNCTLLVRKPLLNQACPITAHGRKD---PRESTGFVLQGCTIV-GEPDYLAVKETSKAYLGR-PWKEYSRTII 478 (670)
T ss_pred cCceEEEEccEEEEccCCCCCceeEecCCCCC---CCCCceEEEEeeEEe-cCccccccccccceeecc-CCCCCceEEE
Confidence 888889999998631 112221 2111 122345778888773 221 12 3223567777
Q ss_pred Ecceee
Q 016398 278 VNNIYT 283 (390)
Q Consensus 278 vNN~~~ 283 (390)
.|.++.
T Consensus 479 ~~t~l~ 484 (670)
T PLN02217 479 MNTFIP 484 (670)
T ss_pred EecccC
Confidence 777764
No 58
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=93.99 E-value=0.86 Score=49.42 Aligned_cols=115 Identities=14% Similarity=0.277 Sum_probs=70.9
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceE-Eec------C-C------cEEEeccccE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQ-MSN------G-P------CISIYNVSNI 154 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~-I~~------G-~------gi~i~~~~NV 154 (390)
|+.+||.. ...+++|+=..|+ .++.+.|. +|+||.|.|..-+ |.+ | . .+.+ .++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~Gv--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v-~~~~F 349 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGV--YNEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAI-NGDHF 349 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCce--eEEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEE-EcCCE
Confidence 78888853 2234555545553 34566673 7999999987533 331 2 1 1234 57899
Q ss_pred EEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccC-----------------eEEee
Q 016398 155 IIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDG-----------------LIDIV 216 (390)
Q Consensus 155 IIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dg-----------------lidi~ 216 (390)
+.+||.|++-.. + ...-|+-++ .++..-+.+|.|.-..|= .+|++
T Consensus 350 ~a~nitf~Ntag--~---------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFI 412 (572)
T PLN02990 350 TAKNIGFENTAG--P---------------EGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFI 412 (572)
T ss_pred EEEeeEEEeCCC--C---------------CCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceE
Confidence 999999997531 0 233455554 578888999999865554 44555
Q ss_pred eCCeeEEEEceeee
Q 016398 217 YGSTAITISNNYMF 230 (390)
Q Consensus 217 ~~s~~ITISnn~f~ 230 (390)
-|.-..-+++|.|.
T Consensus 413 FG~a~avf~~C~i~ 426 (572)
T PLN02990 413 FGDAKVVLQNCNIV 426 (572)
T ss_pred ccCceEEEEccEEE
Confidence 45545555555553
No 59
>PLN02916 pectinesterase family protein
Probab=93.97 E-value=0.81 Score=48.79 Aligned_cols=99 Identities=13% Similarity=0.234 Sum_probs=62.1
Q ss_pred hHHHhhhC-------CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceE-Ee------cCC------cEEEeccc
Q 016398 96 SLRYAVIQ-------EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQ-MS------NGP------CISIYNVS 152 (390)
Q Consensus 96 sLr~av~~-------~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~-I~------~G~------gi~i~~~~ 152 (390)
|+.+||.. ...|++|+=..|+ .++.+.|. +|+||.|.|..-+ |. +|. .+.+ .++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~ 277 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGV--YNEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SGD 277 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCce--eeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-ECC
Confidence 67778743 1335666555564 34566673 6999999987633 32 121 1334 578
Q ss_pred cEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEE
Q 016398 153 NIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLID 214 (390)
Q Consensus 153 NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglid 214 (390)
+++.+||+|++-.. + ...-|+-+. .++..-+.+|.|.-..|=|.+
T Consensus 278 ~F~A~nitf~Ntag--~---------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~ 323 (502)
T PLN02916 278 GFWARDITFENTAG--P---------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFV 323 (502)
T ss_pred CEEEEeeEEEeCCC--C---------------CCCceEEEEEcCCcEEEEeeeEeccCceeEe
Confidence 99999999997531 1 122344443 468888999999876665543
No 60
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=93.96 E-value=0.71 Score=49.67 Aligned_cols=99 Identities=15% Similarity=0.275 Sum_probs=62.2
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceE-Eec------CC------cEEEeccccEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQ-MSN------GP------CISIYNVSNII 155 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~-I~~------G~------gi~i~~~~NVI 155 (390)
|+.+||.. ...|+|||=..|+ .++.+.|. +|+||.|.|..-+ |.+ |. .+.+ .+++++
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~Gv--Y~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 322 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGV--YKENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGFI 322 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCe--eeEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCeE
Confidence 67778753 2345566555664 34556663 7999999987533 331 21 1233 678999
Q ss_pred EEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEE
Q 016398 156 IHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLID 214 (390)
Q Consensus 156 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglid 214 (390)
.+||.|++-.. + ...-|+-+. .++++-+.+|.|.-..|=|.+
T Consensus 323 a~nit~~Ntag--~---------------~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~ 365 (537)
T PLN02506 323 ARDITFRNTAG--P---------------QNHQAVALRVDSDQSAFYRCSMEGYQDTLYA 365 (537)
T ss_pred EEeeEEEeCCC--C---------------CCCceEEEEecCCcEEEEcceeeccccccee
Confidence 99999997531 1 122344443 478899999999876665543
No 61
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=93.80 E-value=0.7 Score=46.03 Aligned_cols=115 Identities=15% Similarity=0.243 Sum_probs=64.8
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceE-EecC------------CcEEEeccccEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQ-MSNG------------PCISIYNVSNII 155 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~-I~~G------------~gi~i~~~~NVI 155 (390)
|+.+||.. ...+++||=..|+- ++.|.|. +++||.|.+..-+ |.+. +.+.+ .+++++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTY--REKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEE--E--EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeE--ccccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-ccccee
Confidence 67788763 23455566566643 4667775 6999999987533 3311 12455 589999
Q ss_pred EEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeEEEEceeeecc
Q 016398 156 IHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHH 232 (390)
Q Consensus 156 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~~H 232 (390)
++||.|++.. ++ .....-||.+. ++++.+.+|.|.-..|=|.. .....-+.+|++..+
T Consensus 91 ~~nit~~Nt~--g~-------------~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~---~~~r~y~~~c~IeG~ 148 (298)
T PF01095_consen 91 AENITFENTA--GP-------------SGGQAVALRVS-GDRAAFYNCRFLGYQDTLYA---NGGRQYFKNCYIEGN 148 (298)
T ss_dssp EEEEEEEEHC--SG-------------SG----SEEET--TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEES
T ss_pred eeeeEEecCC--CC-------------cccceeeeeec-CCcEEEEEeEEccccceeee---ccceeEEEeeEEEec
Confidence 9999999853 11 01234567664 58889999999988887754 223566677877743
No 62
>PLN02314 pectinesterase
Probab=93.79 E-value=0.76 Score=49.96 Aligned_cols=114 Identities=17% Similarity=0.322 Sum_probs=71.4
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceEE-e------cCC------cEEEeccccEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQM-S------NGP------CISIYNVSNII 155 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~I-~------~G~------gi~i~~~~NVI 155 (390)
|+.+||.. ...|+||+=..|+ ..+.+.|. +|+|+.|.|..-+| . +|. .+.+ .+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGT--YVENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCce--EEEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCeE
Confidence 68888853 2346666656665 34556663 68999999875333 2 121 1334 678999
Q ss_pred EEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccC-----------------eEEeee
Q 016398 156 IHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDG-----------------LIDIVY 217 (390)
Q Consensus 156 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dg-----------------lidi~~ 217 (390)
.+||.|++-.. + ...-|+-++ +++..-+.+|.|.-..|= .||++-
T Consensus 369 a~~itf~Ntag--~---------------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIF 431 (586)
T PLN02314 369 AKDMGFINTAG--A---------------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIF 431 (586)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceec
Confidence 99999997531 1 223455554 578888999999876554 445555
Q ss_pred CCeeEEEEceee
Q 016398 218 GSTAITISNNYM 229 (390)
Q Consensus 218 ~s~~ITISnn~f 229 (390)
|.-.+-+++|.|
T Consensus 432 G~a~avf~~c~i 443 (586)
T PLN02314 432 GNAAVVFQNCNI 443 (586)
T ss_pred cCceeeeeccEE
Confidence 555555555555
No 63
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=93.78 E-value=0.77 Score=49.92 Aligned_cols=115 Identities=14% Similarity=0.238 Sum_probs=73.5
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceEEe-------cCC------cEEEeccccEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQMS-------NGP------CISIYNVSNII 155 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~I~-------~G~------gi~i~~~~NVI 155 (390)
|+.+||.. ...|+|||=..|+ .++.+.|. +|+||.|.|..-+|+ +|. .+.+ .+++++
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~Gv--Y~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v-~~~~F~ 365 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGV--YRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA-VGERFL 365 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCce--eEEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE-ECCCeE
Confidence 67778753 2335555555564 34566664 699999998764332 121 1333 578999
Q ss_pred EEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccc-----------------cCeEEeee
Q 016398 156 IHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCY-----------------DGLIDIVY 217 (390)
Q Consensus 156 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~-----------------Dglidi~~ 217 (390)
.+||.|++-.. + ...-|+-++ +++..-+-+|.|.-.. .|.+|++-
T Consensus 366 a~~itf~Ntag--~---------------~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIF 428 (587)
T PLN02313 366 ARDITFQNTAG--P---------------SKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIF 428 (587)
T ss_pred EEeeEEEeCCC--C---------------CCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceec
Confidence 99999997531 1 123444444 4788889999987643 45666666
Q ss_pred CCeeEEEEceeee
Q 016398 218 GSTAITISNNYMF 230 (390)
Q Consensus 218 ~s~~ITISnn~f~ 230 (390)
|.-.+-+++|.|.
T Consensus 429 G~a~avfq~c~i~ 441 (587)
T PLN02313 429 GNAAAVLQDCDIN 441 (587)
T ss_pred cceeEEEEccEEE
Confidence 6667777777775
No 64
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=93.51 E-value=1 Score=48.81 Aligned_cols=98 Identities=17% Similarity=0.293 Sum_probs=61.6
Q ss_pred hHHHhhhC-C------CCeEEEEeeceEEEeCceEEec---cCceEEecCcceE-Ee------cCC------cEEEeccc
Q 016398 96 SLRYAVIQ-E------EPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQ-MS------NGP------CISIYNVS 152 (390)
Q Consensus 96 sLr~av~~-~------~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~-I~------~G~------gi~i~~~~ 152 (390)
|+.+||.. + .-+++|+=..|+- ++.|.|. +|+||.|.|..-+ |. +|. .+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVY--EEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEE--EEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 67778753 1 1245555555653 4566663 7899999987533 32 221 2445 579
Q ss_pred cEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeE
Q 016398 153 NIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLI 213 (390)
Q Consensus 153 NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dgli 213 (390)
+++.+||.|++-.. + ...-|+-++ .++..-+.+|.|.-..|=|.
T Consensus 341 ~F~a~nitf~Ntag--~---------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy 385 (566)
T PLN02713 341 NFVAVNITFRNTAG--P---------------AKHQAVALRSGADLSTFYSCSFEAYQDTLY 385 (566)
T ss_pred CeEEEeeEEEeCCC--C---------------CCCceEEEEecCCcEEEEeeeeccCCcceE
Confidence 99999999997531 1 123455544 57788899998887655443
No 65
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=93.35 E-value=1 Score=48.76 Aligned_cols=97 Identities=13% Similarity=0.206 Sum_probs=60.5
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCceEEec---cCceEEecCcceEE-e------cCC------cEEEeccccEE
Q 016398 96 SLRYAVIQ----EEPLWIIFDHDMVINLKQELVMN---SYKTIDGRGFNVQM-S------NGP------CISIYNVSNII 155 (390)
Q Consensus 96 sLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~I-~------~G~------gi~i~~~~NVI 155 (390)
|..+||.. ..-++|||=..|+ .++.+.|. +|+||.|.|..-+| . +|. .+.+ .+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~Gv--Y~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGV--YFENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCc--eEEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeE
Confidence 67777743 2234555545554 34566663 68999999875333 2 121 1334 578999
Q ss_pred EEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCe
Q 016398 156 IHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGL 212 (390)
Q Consensus 156 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dgl 212 (390)
.+||.|++-.. + ...-|+-+. .++.+-+.+|.|.-..|=|
T Consensus 349 a~~itf~Ntag--~---------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTL 389 (565)
T PLN02468 349 ARDMGFRNTAG--P---------------IKHQAVALMSSADLSVFYRCTMDAFQDTL 389 (565)
T ss_pred EEEEEEEeCCC--C---------------CCCceEEEEEcCCcEEEEEeEEEeccchh
Confidence 99999997531 1 123455554 5788899999998655544
No 66
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=90.96 E-value=1.4 Score=47.48 Aligned_cols=133 Identities=19% Similarity=0.198 Sum_probs=85.0
Q ss_pred CCCeEEEEeeceEEEeCc------e---E-Eec-cCceEEecCcce-EEecCCcEEEeccccEEEEceEEEeeccCCCce
Q 016398 104 EEPLWIIFDHDMVINLKQ------E---L-VMN-SYKTIDGRGFNV-QMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAV 171 (390)
Q Consensus 104 ~~P~~IvF~~~g~I~l~~------~---L-~i~-snkTI~G~ga~i-~I~~G~gi~i~~~~NVIIrnL~i~~~~~~~~~~ 171 (390)
..|+.|.|...-.+.+.. + + .+. +++||.+..-+. +..+-.||.+..++||.|.+.+|.-
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt-------- 307 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT-------- 307 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec--------
Confidence 578999998766655531 1 1 122 566666553211 1112236888899999999999962
Q ss_pred eeCCCCCCCCCCCCCCCeEEEe------------CCccEEEEeeEEeccccCeEEeee---CCeeEEEEceeeeccCeee
Q 016398 172 VRDSPKHYGPRGRSDGDGISIF------------GSRDIWIDHCTFSHCYDGLIDIVY---GSTAITISNNYMFHHNEVM 236 (390)
Q Consensus 172 i~~~~~~~g~~~~~~~DaIsi~------------gs~nVWIDHcs~s~~~Dglidi~~---~s~~ITISnn~f~~H~k~~ 236 (390)
..|+|.+. -+++|||-||.|+.++-+++.-.+ +..+|++-+|.|.+-+.+.
T Consensus 308 --------------gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GL 373 (542)
T COG5434 308 --------------GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGL 373 (542)
T ss_pred --------------CCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCccee
Confidence 23333332 157899999999988888766433 5689999999999977777
Q ss_pred eeccCCCCCCCCcceEEEEeeEe
Q 016398 237 LMGHSDDFSADKNMQVTIAFNFF 259 (390)
Q Consensus 237 L~G~sd~~~~d~~~~vTi~~N~f 259 (390)
-|...+... ...-+|+|.-|.-
T Consensus 374 Rikt~~~~g-G~v~nI~~~~~~~ 395 (542)
T COG5434 374 RIKTNDGRG-GGVRNIVFEDNKM 395 (542)
T ss_pred eeeeecccc-eeEEEEEEecccc
Confidence 776544322 1123555544444
No 67
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=90.41 E-value=6.9 Score=40.99 Aligned_cols=52 Identities=8% Similarity=0.168 Sum_probs=35.5
Q ss_pred ccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeEE
Q 016398 150 NVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLID 214 (390)
Q Consensus 150 ~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dglid 214 (390)
.+++++.+||+|++....+. .....-|+-+. .++.+.+.+|.|.-..|=|..
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~-------------~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSV-------------DAGNHPAVALRTDGDKVQIENVNILGRQDTFFV 256 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCC-------------CCCcceeEEEEEcCCcEEEEeeEEecccceeee
Confidence 57999999999998642110 01223445544 478899999999887777765
No 68
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=90.10 E-value=2.8 Score=43.85 Aligned_cols=115 Identities=23% Similarity=0.286 Sum_probs=55.3
Q ss_pred CCCCeEEEeC------CccEEEEeeEEeccc--cCeEEeeeCCeeEEEEceeeeccCeeeeeccCCCCCCCCcceEEEEe
Q 016398 185 SDGDGISIFG------SRDIWIDHCTFSHCY--DGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAF 256 (390)
Q Consensus 185 ~~~DaIsi~g------s~nVWIDHcs~s~~~--Dglidi~~~s~~ITISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~ 256 (390)
.++.+|.|-. .++..|.|+-|..|. -|.|+++ |..-||++|.|.+..-.+-+=|.. ..|+..
T Consensus 182 NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~g 251 (425)
T PF14592_consen 182 NGGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEG 251 (425)
T ss_dssp S---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES
T ss_pred CCceeEEEecccccccccceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEec
Confidence 4566777632 367788888888764 4577764 567789999998766554443332 458888
Q ss_pred eEecCCCCCC--CCccc-CceEE-EEcceeeCCcc----------eEEecC------CCceEEEEecEEEcCCC
Q 016398 257 NFFGDGLVQR--MPRCR-HGFFH-IVNNIYTGWEM----------YAIGGS------ANPTINSQGNVFIASND 310 (390)
Q Consensus 257 N~f~~n~~~R--~Pr~r-~G~~h-vvNN~~~~~~~----------yaigg~------~~~~i~~egN~F~~~~~ 310 (390)
|+|- +...+ .+-+| .|.-| |+|||+++-.. +++-.+ .-..+.+++|-|++...
T Consensus 252 N~Fi-Gng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~ 324 (425)
T PF14592_consen 252 NVFI-GNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKS 324 (425)
T ss_dssp -EEE-E-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SE
T ss_pred cEEe-cCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCC
Confidence 9983 22222 34445 34444 68999975432 221111 11257889999988763
No 69
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=87.96 E-value=3.7 Score=41.19 Aligned_cols=121 Identities=19% Similarity=0.160 Sum_probs=73.1
Q ss_pred CCCeEEEeCCccEEEEeeEEeccc-----cCeEEeeeCCeeEEEEceeeeccCeeeeeccCCCCCC--CCcceEEEEeeE
Q 016398 186 DGDGISIFGSRDIWIDHCTFSHCY-----DGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSA--DKNMQVTIAFNF 258 (390)
Q Consensus 186 ~~DaIsi~gs~nVWIDHcs~s~~~-----Dglidi~~~s~~ITISnn~f~~H~k~~L~G~sd~~~~--d~~~~vTi~~N~ 258 (390)
-+-++.|..+.||+|-..+|.... +..|.+..++.+|=|-+|-|..|....=--+.|.... ...--||+-+|+
T Consensus 115 ~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~ 194 (345)
T COG3866 115 VGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNK 194 (345)
T ss_pred EeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeee
Confidence 356788989999999999999876 4456776788999999999987654311111222111 112479999999
Q ss_pred ecCCCCCCCCccc--------Cc--eEEEEcceeeCCcceEEecCCCceEEEEecEEEcCC
Q 016398 259 FGDGLVQRMPRCR--------HG--FFHIVNNIYTGWEMYAIGGSANPTINSQGNVFIASN 309 (390)
Q Consensus 259 f~~n~~~R~Pr~r--------~G--~~hvvNN~~~~~~~yaigg~~~~~i~~egN~F~~~~ 309 (390)
|.++-. .-.|. .| .+-+-+|+|.|--...-..+ -..+-+-+|||+.-+
T Consensus 195 fhdh~K--ssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriR-fG~vHvyNNYy~~~~ 252 (345)
T COG3866 195 FHDHDK--SSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIR-FGMVHVYNNYYEGNP 252 (345)
T ss_pred eecCCe--eeeeccCCcccccCCceeEEEeccccccccccCCceE-eeEEEEeccccccCc
Confidence 953322 11221 22 25567888876432110000 124667788888333
No 70
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=87.28 E-value=6.6 Score=35.72 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=31.6
Q ss_pred EEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEee
Q 016398 154 IIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIV 216 (390)
Q Consensus 154 VIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~ 216 (390)
+-|+||.|...... .....++|.+..+++++|++|++..+....+.+.
T Consensus 94 ~~i~nl~i~~~~~~---------------~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~ 141 (225)
T PF12708_consen 94 IQIRNLTIDGNGID---------------PNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFN 141 (225)
T ss_dssp EEEEEEEEEETCGC---------------E-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEE
T ss_pred EEEEeeEEEccccc---------------CCCCceEEEEEeCCeEEEEeEEEEccCccEEEEE
Confidence 44999998753211 0012578888889999999999998755444543
No 71
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=84.36 E-value=6.1 Score=37.00 Aligned_cols=88 Identities=25% Similarity=0.326 Sum_probs=57.5
Q ss_pred eeEEEEceeeecc--CeeeeeccCCCCCCCCcceEEEEeeEecCCCCCCCCccc--Cc-------eEEEEcceeeCCcce
Q 016398 220 TAITISNNYMFHH--NEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCR--HG-------FFHIVNNIYTGWEMY 288 (390)
Q Consensus 220 ~~ITISnn~f~~H--~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~Pr~r--~G-------~~hvvNN~~~~~~~y 288 (390)
++|.|=||.+.+- ...-|+|...+++.+....|-+|||.|. . ...+|... .| ..-+.||+|+..-..
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY-~-tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFY-D-TGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEee-c-CCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 4788889988864 3455678766666666568999999995 3 34566543 23 347899999764333
Q ss_pred EE------e----cCCCceEEEEecEEEcCC
Q 016398 289 AI------G----GSANPTINSQGNVFIASN 309 (390)
Q Consensus 289 ai------g----g~~~~~i~~egN~F~~~~ 309 (390)
|+ + .+.+-+..+.+|.+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 32 2 112346677788887655
No 72
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=82.06 E-value=11 Score=36.14 Aligned_cols=55 Identities=18% Similarity=0.068 Sum_probs=37.9
Q ss_pred CCCCCCCCeEEEeCCc-cEEEEeeEEeccccCeEEeeeCCeeEEEEceeeeccCeeeee
Q 016398 181 PRGRSDGDGISIFGSR-DIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLM 238 (390)
Q Consensus 181 ~~~~~~~DaIsi~gs~-nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~~H~k~~L~ 238 (390)
||..-..||+++.+.. .+.|.-..+..+.|..|-. .+.-.++|++-+.. +.+-|+
T Consensus 90 wwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~-Ng~Gtv~I~nF~a~--d~GKl~ 145 (215)
T PF03211_consen 90 WWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQH-NGGGTVTIKNFYAE--DFGKLY 145 (215)
T ss_dssp EESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEE--EEEEEE
T ss_pred EecccceeeeEEcCCCceEEEeCCcccCCCccEEEe-cCceeEEEEeEEEc--CCCEEE
Confidence 3444678899998877 8888888888888888774 45567888884443 334444
No 73
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=62.61 E-value=14 Score=25.52 Aligned_cols=40 Identities=28% Similarity=0.217 Sum_probs=25.0
Q ss_pred eEEEeCCccEEEEeeEEeccccCeEEeeeCCeeEEEEceeee
Q 016398 189 GISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMF 230 (390)
Q Consensus 189 aIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~ 230 (390)
||.+..+++..|..+.++...||. .+ ..+.+.+|..|.|.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI-~~-~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGI-YL-TDSSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEE-EE-EeCCCCEeECCEEE
Confidence 456666666667777777777743 33 34556666666665
No 74
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=50.44 E-value=78 Score=30.90 Aligned_cols=90 Identities=20% Similarity=0.191 Sum_probs=52.6
Q ss_pred eccCceEEecCcce-EEecCCcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeC------Ccc
Q 016398 125 MNSYKTIDGRGFNV-QMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFG------SRD 197 (390)
Q Consensus 125 i~snkTI~G~ga~i-~I~~G~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~g------s~n 197 (390)
..++.+|.|.+-.- .+..|.+|.|+.+ +..|+|-+|+++. .++|.+.+ ..+
T Consensus 95 ~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~ 152 (246)
T PF07602_consen 95 LANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGING 152 (246)
T ss_pred ecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccc
Confidence 34666666653110 1123667999655 8999999998753 24454433 245
Q ss_pred EEEEeeEEeccccCeEEeee--CCeeEEEEceeeeccCeeee
Q 016398 198 IWIDHCTFSHCYDGLIDIVY--GSTAITISNNYMFHHNEVML 237 (390)
Q Consensus 198 VWIDHcs~s~~~Dglidi~~--~s~~ITISnn~f~~H~k~~L 237 (390)
+.|.-+++.....|. ++.. ....-+|.||+|.+-..++.
T Consensus 153 ~vI~GN~~~~~~~Gi-~i~~~~~~~~n~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 153 NVISGNSIYFNKTGI-SISDNAAPVENKIENNIIENNNIGIV 193 (246)
T ss_pred eEeecceEEecCcCe-EEEcccCCccceeeccEEEeCCcCeE
Confidence 556666777665554 2221 12224789999997655544
No 75
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=47.51 E-value=36 Score=34.26 Aligned_cols=55 Identities=27% Similarity=0.392 Sum_probs=35.4
Q ss_pred EeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEeccccCeE
Q 016398 148 IYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLI 213 (390)
Q Consensus 148 i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dgli 213 (390)
+.+.+..||||++-+++.|..+ +..| -|.--+.|+|++|..||...+.++.--+|
T Consensus 264 vengkhfvirnvkaknitpdfs-------kkag----idnatvaiygcdnfvidni~mvnsagmli 318 (464)
T PRK10123 264 VENGKHFVIRNIKAKNITPDFS-------KKAG----IDNATVAIYGCDNFVIDNIEMINSAGMLI 318 (464)
T ss_pred ecCCcEEEEEeeeccccCCCch-------hhcC----CCcceEEEEcccceEEeccccccccccEE
Confidence 3456777888888777765321 1112 34455677899999999888776654443
No 76
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=45.91 E-value=2.9e+02 Score=27.55 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=19.9
Q ss_pred eEEEEeeEecCCCCCCCCcccCceEEEEcceee
Q 016398 251 QVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYT 283 (390)
Q Consensus 251 ~vTi~~N~f~~n~~~R~Pr~r~G~~hvvNN~~~ 283 (390)
++|+.++.. .+ -.|.|---.+.+.|.-+.
T Consensus 195 NltliNC~I-~g---~QpLCY~~~L~l~nC~~~ 223 (277)
T PF12541_consen 195 NLTLINCTI-EG---TQPLCYCDNLVLENCTMI 223 (277)
T ss_pred CeEEEEeEE-ec---cCccEeecceEEeCcEee
Confidence 689999988 34 357765455667777665
No 77
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=45.80 E-value=2.7e+02 Score=26.35 Aligned_cols=71 Identities=23% Similarity=0.226 Sum_probs=44.4
Q ss_pred CccEEEEeeEEeccc-cCeEEee-----eCCeeEEEEceeeec--cCeeeeeccCCCCCCC-CcceEEEEeeEecCCCCC
Q 016398 195 SRDIWIDHCTFSHCY-DGLIDIV-----YGSTAITISNNYMFH--HNEVMLMGHSDDFSAD-KNMQVTIAFNFFGDGLVQ 265 (390)
Q Consensus 195 s~nVWIDHcs~s~~~-Dglidi~-----~~s~~ITISnn~f~~--H~k~~L~G~sd~~~~d-~~~~vTi~~N~f~~n~~~ 265 (390)
+++|+|.|+.|..+. ...++.. .|-.+..|-||.|.. |-.+..+......+.. .....++..|.+ .|+.+
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII-~NT~~ 111 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNII-VNTRK 111 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceE-eeeee
Confidence 579999999999853 4444322 344578999999985 3333333322223332 355667778888 57776
Q ss_pred C
Q 016398 266 R 266 (390)
Q Consensus 266 R 266 (390)
|
T Consensus 112 r 112 (198)
T PF08480_consen 112 R 112 (198)
T ss_pred c
Confidence 6
No 78
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=43.53 E-value=3.6 Score=30.06 Aligned_cols=19 Identities=42% Similarity=0.992 Sum_probs=13.0
Q ss_pred ccccccCCcchhhhhcccc
Q 016398 43 IDDCWRCDSEWESNRKALA 61 (390)
Q Consensus 43 id~~~r~~~~w~~~~~~la 61 (390)
-|+|.||+-.|+..|-.-|
T Consensus 20 yd~ci~cqgkwagkrgkca 38 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCA 38 (55)
T ss_dssp HHHH--TTGGGTT-HHHHH
T ss_pred hhHHheecceeccccCcch
Confidence 6999999999998775543
No 79
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=42.18 E-value=73 Score=21.86 Aligned_cols=42 Identities=21% Similarity=0.132 Sum_probs=31.1
Q ss_pred cEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEeCCccEEEEeeEEecc
Q 016398 145 CISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHC 208 (390)
Q Consensus 145 gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~ 208 (390)
||.+..+++..|++=+|.+ ..|||.+..+++.-|..+.++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~----------------------~~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN----------------------NSYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeC----------------------CCCEEEEEeCCCCEeECCEEEcC
Confidence 4666667777777777763 34699999998888888888753
No 80
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=38.38 E-value=4.9e+02 Score=27.23 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=54.9
Q ss_pred EEEeccccEEEEceEEEeeccCCCceeeCCCCCC--CCCCCCCCCeEEEeCCccEEEEeeEEeccccCeEEeeeCCeeEE
Q 016398 146 ISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHY--GPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAIT 223 (390)
Q Consensus 146 i~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~--g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dglidi~~~s~~IT 223 (390)
+.+....+++||+-.|-+..- .-++...+.. |=.--.-.-||.-.+...+=|-||.|..|.=|.+. ....+
T Consensus 139 ~~f~~~t~~~~hgC~F~gf~g---~cl~~~~~~~VrGC~F~~C~~gi~~~~~~~lsVk~C~FekC~igi~s----~G~~~ 211 (386)
T PF01696_consen 139 VVFHANTNTLFHGCSFFGFHG---TCLESWAGGEVRGCTFYGCWKGIVSRGKSKLSVKKCVFEKCVIGIVS----EGPAR 211 (386)
T ss_pred eEEEecceEEEEeeEEecCcc---eeEEEcCCcEEeeeEEEEEEEEeecCCcceEEeeheeeeheEEEEEe----cCCeE
Confidence 444467788888888876531 1111110000 00000112233334456777888888888777743 23678
Q ss_pred EEceeeeccCeeeeeccCCCCCCCCcceEEEEeeEec
Q 016398 224 ISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFG 260 (390)
Q Consensus 224 ISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~ 260 (390)
|++|-|.+-.-..|++. .-++.||.|-
T Consensus 212 i~hn~~~ec~Cf~l~~g----------~g~i~~N~v~ 238 (386)
T PF01696_consen 212 IRHNCASECGCFVLMKG----------TGSIKHNMVC 238 (386)
T ss_pred EecceecccceEEEEcc----------cEEEeccEEe
Confidence 88888887665555554 2477888884
No 81
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=32.36 E-value=1.6e+02 Score=31.73 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=33.5
Q ss_pred cEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEEe-CCccEEEEeeEEeccccCeE
Q 016398 145 CISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF-GSRDIWIDHCTFSHCYDGLI 213 (390)
Q Consensus 145 gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dgli 213 (390)
.+.+ .+++++.+||.|++-.. + .+.-|+-+. .++++-+.+|.|.-..|=|.
T Consensus 264 T~~v-~~~~F~a~nitf~Ntag--~---------------~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy 315 (497)
T PLN02698 264 TFTI-TGDGFIARDIGFKNAAG--P---------------KGEQAIALSITSDHSVLYRCSIAGYQDTLY 315 (497)
T ss_pred eEEE-ECCCeEEEeeEEEECCC--C---------------CCCceEEEEecCCcEEEEcceeecccchhe
Confidence 4556 67899999999997531 1 122344443 47788888888886555443
No 82
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=27.79 E-value=1.4e+02 Score=29.66 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=13.4
Q ss_pred CeeEEEEceeeeccCeeeeeccC
Q 016398 219 STAITISNNYMFHHNEVMLMGHS 241 (390)
Q Consensus 219 s~~ITISnn~f~~H~k~~L~G~s 241 (390)
+++++|.+|+|..-.+..||-+.
T Consensus 57 ~~~~~i~~~~f~~~aRa~iWYs~ 79 (277)
T PF12541_consen 57 SDNIKIENCYFTEMARAAIWYSN 79 (277)
T ss_pred ECCeEEEeeEEeecceeeeeEeC
Confidence 34556666666665566666543
No 83
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=25.78 E-value=69 Score=34.07 Aligned_cols=54 Identities=31% Similarity=0.436 Sum_probs=38.4
Q ss_pred EEeeceE---EEeCceEEeccCceEEecCcceEEec-CCcEEEeccccEEEEceEEEeecc
Q 016398 110 IFDHDMV---INLKQELVMNSYKTIDGRGFNVQMSN-GPCISIYNVSNIIIHNIYIHDCVP 166 (390)
Q Consensus 110 vF~~~g~---I~l~~~L~i~snkTI~G~ga~i~I~~-G~gi~i~~~~NVIIrnL~i~~~~~ 166 (390)
+||-.|. |+-.+.=.+..||--+|++..|.|.+ |.||.- +|-|+||--|++..|
T Consensus 458 IFDNaMagVwIKTds~PtlrRNKI~dgRdgGicifngGkGlle---~neif~Nalit~S~p 515 (625)
T KOG1777|consen 458 IFDNAMAGVWIKTDSNPTLRRNKIYDGRDGGICIFNGGKGLLE---HNEIFRNALITDSAP 515 (625)
T ss_pred chhhhhcceEEecCCCcceeecceecCCCCcEEEecCCceeee---chhhhhccccccCCh
Confidence 5666663 55555556678999999998888885 556654 678999987765443
No 84
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=21.94 E-value=1.2e+02 Score=17.26 Aligned_cols=16 Identities=13% Similarity=0.140 Sum_probs=8.7
Q ss_pred ccEEEEeeEEeccccC
Q 016398 196 RDIWIDHCTFSHCYDG 211 (390)
Q Consensus 196 ~nVWIDHcs~s~~~Dg 211 (390)
.+++|.+|.|......
T Consensus 2 ~~~~i~~n~i~~~~~~ 17 (26)
T smart00710 2 SNVTIENNTIRNNGGD 17 (26)
T ss_pred CCEEEECCEEEeCCCC
Confidence 3455666666555443
Done!