Query 016399
Match_columns 390
No_of_seqs 197 out of 2051
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 12:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.9 7.6E-10 2.6E-14 89.4 5.5 70 275-344 35-105 (137)
2 3b5d_A Multidrug transporter E 98.7 1.5E-07 5.2E-12 73.2 11.3 69 275-343 35-104 (110)
3 3b5d_A Multidrug transporter E 98.6 3.5E-07 1.2E-11 71.1 9.7 100 22-164 3-103 (110)
4 2i68_A Protein EMRE; transmemb 98.6 8.5E-08 2.9E-12 77.3 6.2 69 90-164 34-103 (137)
5 1pw4_A Glycerol-3-phosphate tr 68.9 71 0.0024 29.3 22.0 15 49-63 118-132 (451)
6 4djk_A Probable glutamate/gamm 34.2 3E+02 0.01 25.9 12.1 15 328-342 450-464 (511)
7 2xq2_A Sodium/glucose cotransp 29.6 3.4E+02 0.012 26.5 10.9 30 309-338 533-562 (593)
8 3rko_J NADH-quinone oxidoreduc 26.7 2.6E+02 0.009 22.8 13.5 31 311-341 127-159 (184)
9 2zxe_G FXYD10, phospholemman-l 24.1 34 0.0012 23.4 1.6 23 326-348 24-46 (74)
10 3l1l_A Arginine/agmatine antip 19.4 5.2E+02 0.018 23.6 14.5 43 303-345 387-429 (445)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.94 E-value=7.6e-10 Score=89.38 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceeeeeh-hhhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhhheeecC
Q 016399 275 AGVVASGIAFAVQIWCIDRGGPVFVAVY-QPVQTLVVAIMASFALGEEFYLGGIIGAVLIVVGLYLVLWGK 344 (390)
Q Consensus 275 ~gi~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~~e~~~~~~~iG~~li~~gv~l~~~~~ 344 (390)
.++++++++|.++.+++++.+++.+..+ ..+.|+++++++++++||++++.+++|+++|++|+++....+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5667799999999999999999999998 899999999999999999999999999999999999887543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.70 E-value=1.5e-07 Score=73.18 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceeeeeh-hhhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhhheeec
Q 016399 275 AGVVASGIAFAVQIWCIDRGGPVFVAVY-QPVQTLVVAIMASFALGEEFYLGGIIGAVLIVVGLYLVLWG 343 (390)
Q Consensus 275 ~gi~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~~e~~~~~~~iG~~li~~gv~l~~~~ 343 (390)
.++++.++++.++.+++|+.+.+.+..+ ..+.|+++.+++++++||++++.+++|+++|++|+++....
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 5566789999999999999999999888 89999999999999999999999999999999999988654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.56 E-value=3.5e-07 Score=71.14 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 016399 22 LHLAMVALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIAFLLLLPFAYFLEKKERPAMTLNFALQFILLALVGITANQG 101 (390)
Q Consensus 22 ~~l~~ll~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 101 (390)
.+++++++.++........|... +.. +.+. ...+++++.+++.
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s~--~~~---------------------------------~~~~--~~~~~~~~~~~~~ 45 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFSE--GFT---------------------------------RLWP--SVGTIICYCASFW 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--Ccc---------------------------------hHHH--HHHHHHHHHHHHH
Confidence 46777777788888777777741 110 1112 2456666888999
Q ss_pred HHHHhcccCCccccccc-ccchhHHHHHHHHHHhhccccccccCccccchhHHHHHhhhhHHhh
Q 016399 102 FYLLGLENTSPTFASAI-QNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITL 164 (390)
Q Consensus 102 ~~~~al~~~~~~~~~il-~~~~pi~~~ila~l~l~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 164 (390)
++.+++++.|.+.+..+ ..+.|+++.+++++++||+++. .+++|+.+.++|++++..
T Consensus 46 ~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~------~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL------PAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHHHhc
Confidence 99999999999999888 7999999999999999999999 699999999999999863
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.56 E-value=8.5e-08 Score=77.33 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHhcccCCccccccc-ccchhHHHHHHHHHHhhccccccccCccccchhHHHHHhhhhHHhh
Q 016399 90 LLALVGITANQGFYLLGLENTSPTFASAI-QNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITL 164 (390)
Q Consensus 90 ~~g~~~~~~~~~~~~~al~~~~~~~~~il-~~~~pi~~~ila~l~l~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 164 (390)
+.+++++++++.++.+++++.+++.+..+ ..+.|+++.++++++++|++++ .+++|+.+.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~------~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL------PAIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHHHhc
Confidence 46667788999999999999999999888 8999999999999999999999 699999999999999874
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=68.92 E-value=71 Score=29.34 Aligned_cols=15 Identities=20% Similarity=0.135 Sum_probs=8.5
Q ss_pred CchHHHHHHHHHHHH
Q 016399 49 SKLVFPVYRNIIAFL 63 (390)
Q Consensus 49 ~~~~~~~~r~~~~~l 63 (390)
+...+...|.+.+..
T Consensus 118 ~~~~l~~~~~l~G~~ 132 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWF 132 (451)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 445566667665543
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=34.18 E-value=3e+02 Score=25.88 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhheee
Q 016399 328 IGAVLIVVGLYLVLW 342 (390)
Q Consensus 328 iG~~li~~gv~l~~~ 342 (390)
++..+++.++..+.+
T Consensus 450 ~~~~~~~~~i~~~~~ 464 (511)
T 4djk_A 450 VVSFLVVLALPFILY 464 (511)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=29.57 E-value=3.4e+02 Score=26.52 Aligned_cols=30 Identities=7% Similarity=-0.107 Sum_probs=20.2
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHhh
Q 016399 309 VVAIMASFALGEEFYLGGIIGAVLIVVGLY 338 (390)
Q Consensus 309 ~~~l~~~~~~~e~~~~~~~iG~~li~~gv~ 338 (390)
..++.-+++|.++....-.+++.+++.|++
T Consensus 533 ~~~~~~~~~f~~~~~~~i~l~v~~~~~~~~ 562 (593)
T 2xq2_A 533 IVLAVLYTLFWVNADAEITLIIFGVMAGVI 562 (593)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 344444556677777777777888888776
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=26.68 E-value=2.6e+02 Score=22.85 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHH--HHhhhee
Q 016399 311 AIMASFALGEEFYLGGIIGAVLIV--VGLYLVL 341 (390)
Q Consensus 311 ~l~~~~~~~e~~~~~~~iG~~li~--~gv~l~~ 341 (390)
--+|..++++-.-+-+..+..+.+ +|.+...
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLa 159 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVG 159 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778899988888999888764 3444444
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=24.09 E-value=34 Score=23.44 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhheeecCcchh
Q 016399 326 GIIGAVLIVVGLYLVLWGKSEEK 348 (390)
Q Consensus 326 ~~iG~~li~~gv~l~~~~~~~~~ 348 (390)
.++++++.++|++++..+|-|-+
T Consensus 24 LifA~vLfi~GI~iilS~kcrCk 46 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCRCK 46 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC----
T ss_pred chhHHHHHHHHHHHHHcCccccC
Confidence 45677778888887775554433
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=19.42 E-value=5.2e+02 Score=23.57 Aligned_cols=43 Identities=9% Similarity=-0.090 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhhheeecCc
Q 016399 303 QPVQTLVVAIMASFALGEEFYLGGIIGAVLIVVGLYLVLWGKS 345 (390)
Q Consensus 303 ~~~~pv~~~l~~~~~~~e~~~~~~~iG~~li~~gv~l~~~~~~ 345 (390)
...-++++.++..+..-.......+.|.+++++|+.++.+.++
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~ 429 (445)
T 3l1l_A 387 YLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYN 429 (445)
T ss_dssp THHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445544443332212223455678888888877765443
Done!